Citrus Sinensis ID: 016814

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Secondary Structure (PSIPRED)
cHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHccccHHHHccHHHHHHHHHHHccHHHHHHHcHHHHHHHHccccHHHHHHHHHcHHHHHHHHcHHHHHHcHHHHHHHHHccccHHHHHHHHccHHHHHHcccccHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHccccccHHHHHHHHHHHHHHHHHHcHHHHHHHcHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHcHHHHHHHHcccccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
miawqqsndqdSVRLLAVEGCAAlgkllepqdcvahILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrmdlvPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCvkelssdssQHVRSALASVIMGmapllgkdatIEQLLPIFLSLlkdefpdvRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAsqlgvgffddKLGALCMQWLQDKVYSIRDAAANNLKRLAEefgpewamqhitpqvleminnphyLYRMTILRAISLLapvmgseitcsrllpvvinaskdrvpniKFNVAKVLQSLIpivdqsmvekTIRPClveltedpdvdvRFFATQAIQSIDHVMMSS
Flexible Loop (DISEMBL)
miawqqsndqdsVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCeavgpeptrMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSlipivdqsmvEKTIRPCLVEltedpdvdvRFFATQAiqsidhvmmss
Low Complexity Region (SEG)
MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered region (IsUnstruct)
************VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKEL******HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID******
Disordered Region (DISOPRED)
MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM**
Disordered Region (DISEMBL)
*********QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE**********SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Disordered Region (DISPRO)
MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q38950	587	Serine/threonine-protein	yes	no	0.876	0.570	0.946	0.0
Q38951	587	Serine/threonine-protein	no	no	0.876	0.570	0.933	0.0
Q38845	588	Serine/threonine-protein	no	no	0.861	0.559	0.907	0.0
P36875	395	Protein phosphatase PP2A	N/A	no	0.981	0.949	0.893	0.0
Q32PI5	589	Serine/threonine-protein	yes	no	0.973	0.631	0.577	1e-122
Q54QR9	584	Serine/threonine-protein	yes	no	0.861	0.563	0.591	1e-122
P54612	589	Serine/threonine-protein	yes	no	0.973	0.631	0.577	1e-122
Q76MZ3	589	Serine/threonine-protein	yes	no	0.973	0.631	0.577	1e-122
P30153	589	Serine/threonine-protein	yes	no	0.973	0.631	0.577	1e-122
P54613	602	Serine/threonine-protein	no	no	0.958	0.607	0.572	1e-118

>sp|Q38950|2AAB_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform OS=Arabidopsis thaliana GN=PP2AA2 PE=1 SV=2

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/375 (94%), Positives = 368/375 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38951|2AAG_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A gamma isoform OS=Arabidopsis thaliana GN=PP2AA3 PE=1 SV=2

 Score =  721 bits (1861), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 350/375 (93%), Positives = 365/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAY RLL DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD+KLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           R+AAANNLKRLAEEFGPEWAMQHI PQVLEMINNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 REAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLP VI ASKDRVPNIKFNVAK++QSLIPIVDQ++VE  IRPCLVEL+EDPDVDVR+F
Sbjct: 513 SKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRYF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Involved during developmental process such as seedling and floral developments. Seems to act as a negative regulator of PP2A catalytic activity.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38845|2AAA_ARATH Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Arabidopsis thaliana GN=PP2AA1 PE=1 SV=1

 Score =  699 bits (1805), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/369 (90%), Positives = 358/369 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVA ILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVARILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GP+ TR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCR+LNPELAIQHILPCVKELSSDSS
Sbjct: 273 GPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKD+TIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLASQLG+GFFDDKLGALCMQWLQDKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           R+AAANNLKRLAEEFGPEWAMQH+ PQVL+M+NNPHYL+RM +LRAISL+APVMGSEITC
Sbjct: 453 REAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVDQS+V+KTIR CLV+L+EDPDVDVR+F
Sbjct: 513 SKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYF 572

Query: 368 ATQAIQSID 376
           A QA+ SID
Sbjct: 573 ANQALNSID 581

The A subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Seems to act as a positive regulator of PP2A catalytic activity. Confers resistance to phosphatase inhibitors such as okadaic acid and cantharidin. Involved during developmental process such as seedling and floral developments, root gravitropism, and stomatal opening regulation. Involved in the regulation of auxin efflux, especially during basipetal (tips to base) auxin transport in roots, and appears to contribute to the perception of auxin efflux inhibitors such as 1-N-naphthylphthalamic acid (NPA) and to semicarbazone I (substituted phenylsemicarbazone of 2-acetylarylcarboxylic acids) (SCB-I). Modulates the magnitude of ethylene response in the hypocotyl and stem, and functions as a general positive transducer of early ABA signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P36875|2AAA_PEA Protein phosphatase PP2A regulatory subunit A (Fragment) OS=Pisum sativum PE=2 SV=1

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/376 (89%), Positives = 359/376 (95%), Gaps = 1/376 (0%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDS R LAVEGCAALGKLLEPQDC+AHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 20  DDQDSFRFLAVEGCAALGKLLEPQDCLAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 79

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GP+ T+ +LVPAYVRLLRDN AEVRIAAAGKV+KF RIL+PELAIQHILPCVKELS+DSS
Sbjct: 80  GPDSTKTELVPAYVRLLRDNVAEVRIAAAGKVSKFSRILSPELAIQHILPCVKELSTDSS 139

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 140 QHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 199

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL MQWL+DK YSI
Sbjct: 200 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALIMQWLKDKEYSI 259

Query: 248 RDAAANNLKRL-AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 306
           R+AAANN+KRL AEEFGPEWAMQHI PQVL+MIN+PHYLYRMTIL AISLLAPV+GSEIT
Sbjct: 260 RNAAANNVKRLAAEEFGPEWAMQHIIPQVLDMINDPHYLYRMTILHAISLLAPVLGSEIT 319

Query: 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRF 366
            + LLP+V+NASKDRVPNIKFNVAKVLQSLIPIVD+S+VE TIRPCLVEL+EDPDVDVRF
Sbjct: 320 STNLLPLVVNASKDRVPNIKFNVAKVLQSLIPIVDESVVESTIRPCLVELSEDPDVDVRF 379

Query: 367 FATQAIQSIDHVMMSS 382
           FA+QA+QS D V MSS
Sbjct: 380 FASQALQSSDQVKMSS 395

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Pisum sativum (taxid: 3888)

>sp|Q32PI5|2AAA_BOVIN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Bos taurus GN=PPP2R1A PE=1 SV=1

 Score =  438 bits (1127), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 286/376 (76%), Gaps = 4/376 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELHKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 327

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD+TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISN 387

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKL 567

Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Bos taurus (taxid: 9913)

>sp|Q54QR9|2AAA_DICDI Serine/threonine-protein phosphatase 2A regulatory subunit pppA OS=Dictyostelium discoideum GN=pppA PE=2 SV=1

 Score =  438 bits (1127), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/367 (59%), Positives = 287/367 (78%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           +++QDSVRLL VE CA LG +L  ++ +  ILP I   S DKSWRVRYMVA  L ELCE+
Sbjct: 216 TDEQDSVRLLGVENCALLGSMLTNEENIQFILPTIKASSLDKSWRVRYMVARLLKELCES 275

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
           +G E T+ +L+ A+V+LL+D EAEVR  A+ ++   C +L  E+ I+ ILPCVK+L SDS
Sbjct: 276 MGTEITKTELIGAFVKLLKDTEAEVRTEASLRIADVCSLLTKEMNIKTILPCVKDLVSDS 335

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
           SQHVR+ALA VIM +AP+ GK+ T+  LL +FL LLKD+FPDVRLNIISKLDQV++VIGI
Sbjct: 336 SQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGI 395

Query: 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 246
           ++LSQSLLPAIVELAED  WRVRLAII+YIPLLASQLGV FFD+KLG LCM WL D V+S
Sbjct: 396 EMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFS 455

Query: 247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 306
           IR+AA NNLK+L E FG +WA  +I P+VL + ++P+YLYRMT L +IS L+ V+G ++ 
Sbjct: 456 IREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVI 515

Query: 307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRF 366
            S ++P++     D+VPNI+FNVAK  Q++IP++D ++V+  ++P LV+L ED D DV+F
Sbjct: 516 SSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKF 575

Query: 367 FATQAIQ 373
           +A+QA+Q
Sbjct: 576 YASQALQ 582

Scaffolding molecule which may coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Dictyostelium discoideum (taxid: 44689)

>sp|P54612|2AAA_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Sus scrofa GN=PPP2R1A PE=2 SV=2

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 327

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Sus scrofa (taxid: 9823)

>sp|Q76MZ3|2AAA_MOUSE Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Mus musculus GN=Ppp2r1a PE=1 SV=3

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 327

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Mus musculus (taxid: 10090)

>sp|P30153|2AAA_HUMAN Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform OS=Homo sapiens GN=PPP2R1A PE=1 SV=4

 Score =  437 bits (1123), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 327

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567

Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit. Required for proper chromosome segregation and for centromeric localization of SGOL1 in mitosis.

Homo sapiens (taxid: 9606)

>sp|P54613|2AAB_PIG Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform (Fragment) OS=Sus scrofa GN=PPP2R1B PE=2 SV=1

 Score =  426 bits (1095), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 212/370 (57%), Positives = 279/370 (75%), Gaps = 4/370 (1%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           S++QDSVRLLAVE C ++ +LL   D  A ++P +   ++DKSWRVRYMVA++  EL  A
Sbjct: 227 SDEQDSVRLLAVEACVSIAQLLSQDDLEALVMPTLRQAAEDKSWRVRYMVADKFSELQRA 286

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
           VGP+ T  DL+PA+  LL+D EAEVR AAA KV + C  L  E    + +  ILPC+KEL
Sbjct: 287 VGPKITLNDLIPAFQNLLKDCEAEVRAAAAHKVKELCENLPIEGRETIIMNQILPCIKEL 346

Query: 123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
            SD++QHV+SALASVIMG++ +LGK+ TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct: 347 VSDTNQHVKSALASVIMGLSTILGKENTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 406

Query: 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
           VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct: 407 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 466

Query: 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
            VY+IR+AA NNL +L ++FG EWA   I P+VL M N+P+YL+RMT L  I++L+   G
Sbjct: 467 HVYAIREAATNNLMKLVQKFGTEWAQNTIVPKVLVMANDPNYLHRMTTLFCINVLSEACG 526

Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
            EIT  ++LP+V+  + D+V N++FNVAK LQ + PI+D   +++ ++P L +L +D D+
Sbjct: 527 QEITTKQMLPIVLKMAGDQVANVRFNVAKSLQKIGPILDTDALQEEVKPVLQKLGQDEDM 586

Query: 363 DVRFFATQAI 372
           DV++FA +AI
Sbjct: 587 DVKYFAQEAI 596

The PR65 subunit of protein phosphatase 2A serves as a scaffolding molecule to coordinate the assembly of the catalytic subunit and a variable regulatory B subunit.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
255576493	587	serine/threonine protein phosphatase 2a	0.876	0.570	0.954	0.0
224115920	587	predicted protein [Populus trichocarpa]	0.876	0.570	0.941	0.0
449434642	587	PREDICTED: serine/threonine-protein phos	0.876	0.570	0.949	0.0
297818092	587	hypothetical protein ARALYDRAFT_904748 [	0.876	0.570	0.949	0.0
15230896	587	protein phosphatase 2A subunit A2 [Arabi	0.876	0.570	0.946	0.0
353259711	587	serine/threonine protein phosphatase 2a	0.876	0.570	0.949	0.0
224108518	587	predicted protein [Populus trichocarpa]	0.876	0.570	0.944	0.0
343172122	576	protein phosphatase 2A subunit A2, parti	0.874	0.579	0.938	0.0
683502	587	protein phosphatase 2A 65 kDa regulatory	0.876	0.570	0.944	0.0
297849722	587	hypothetical protein ARALYDRAFT_888699 [	0.876	0.570	0.938	0.0

>gi|255576493|ref|XP_002529138.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis] gi|223531417|gb|EEF33251.1| serine/threonine protein phosphatase 2a regulatory subunit A, putative [Ricinus communis]

 Score =  732 bits (1890), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/375 (95%), Positives = 367/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAM+HI PQVLEM+ NPHYLYRMTILRAISLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMRHIIPQVLEMVTNPHYLYRMTILRAISLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV  ASKDRVPNIKFNVAKVLQSLI IVDQS+VEKTIRPCL EL+EDPDVDVRFF
Sbjct: 513 SKLLPVVATASKDRVPNIKFNVAKVLQSLISIVDQSVVEKTIRPCLAELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115920|ref|XP_002332045.1| predicted protein [Populus trichocarpa] gi|222875342|gb|EEF12473.1| predicted protein [Populus trichocarpa]

 Score =  732 bits (1889), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 353/375 (94%), Positives = 371/375 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQHILPCVK+LS+DSS
Sbjct: 273 GPEPTRSDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEVAIQHILPCVKDLSTDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL+DKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLKDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANN+KRLAEEFGP+WAMQHI PQVL++INNPHYLYRMTIL A+SLL+PVMGSEITC
Sbjct: 453 RDAAANNVKRLAEEFGPDWAMQHIVPQVLDLINNPHYLYRMTILHAVSLLSPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLP+VINASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRPCLVEL+EDPDVDVRFF
Sbjct: 513 SQLLPIVINASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPCLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           ATQA+QS DHVMMS+
Sbjct: 573 ATQALQSSDHVMMST 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434642|ref|XP_004135105.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus] gi|449493464|ref|XP_004159301.1| PREDICTED: serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform-like [Cucumis sativus]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/375 (94%), Positives = 369/375 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVLHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL+PELAIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVL+MINNPHYLYRMT+LRA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLDMINNPHYLYRMTVLRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           ++LLPVVI++SKDRVPNIKFNVAKVLQSLIPIVDQ +VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 TKLLPVVISSSKDRVPNIKFNVAKVLQSLIPIVDQPVVEKTIRPSLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSIDHVMMSS
Sbjct: 573 ANQALQSIDHVMMSS 587

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818092|ref|XP_002876929.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata] gi|297322767|gb|EFH53188.1| hypothetical protein ARALYDRAFT_904748 [Arabidopsis lyrata subsp. lyrata]

 Score =  731 bits (1887), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/375 (94%), Positives = 368/375 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVLEMINNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15230896|ref|NP_189208.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana] gi|83287930|sp|Q38950.2|2AAB_ARATH RecName: Full=Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A beta isoform; Short=AtA beta; Short=PP2A, subunit A, beta isoform gi|7939566|dbj|BAA95767.1| protein phosphotase 2a 65kd regulatory subunit [Arabidopsis thaliana] gi|27311765|gb|AAO00848.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana] gi|30725386|gb|AAP37715.1| At3g25800 [Arabidopsis thaliana] gi|332643548|gb|AEE77069.1| protein phosphatase 2A subunit A2 [Arabidopsis thaliana]

 Score =  731 bits (1886), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 355/375 (94%), Positives = 368/375 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|353259711|gb|AEQ75494.1| serine/threonine protein phosphatase 2a regulatory subunit A [Rosa multiflora]

 Score =  728 bits (1880), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/375 (94%), Positives = 367/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GP+PTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS
Sbjct: 273 GPDPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMA +LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMALVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG+LCMQWLQDKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGSLCMQWLQDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVLEMI+NPHYLYRMTILRAI LLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMIDNPHYLYRMTILRAICLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVD S+VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVVTASKDRVPNIKFNVAKVLQSLIPIVDHSVVEKTIRPTLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           ATQA+Q+IDHVMMSS
Sbjct: 573 ATQALQAIDHVMMSS 587

Source: Rosa multiflora

Species: Rosa multiflora

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224108518|ref|XP_002314877.1| predicted protein [Populus trichocarpa] gi|118484366|gb|ABK94060.1| unknown [Populus trichocarpa] gi|222863917|gb|EEF01048.1| predicted protein [Populus trichocarpa]

 Score =  728 bits (1879), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/375 (94%), Positives = 366/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL+PE AIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPEHAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAM+HI PQVLEM  NPHYLYRMTI+RA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMEHIIPQVLEMSTNPHYLYRMTIIRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+NASKDRV NIKFNVAKVLQSLIPIVDQS+ EKTIRPCLVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVVNASKDRVSNIKFNVAKVLQSLIPIVDQSVAEKTIRPCLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+Q+ID VMMSS
Sbjct: 573 ANQALQTIDSVMMSS 587

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343172122|gb|AEL98765.1| protein phosphatase 2A subunit A2, partial [Silene latifolia]

 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/374 (93%), Positives = 368/374 (98%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAH+LPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 203 DDQDSVRLLAVEGCAALGKLLEPQDCVAHVLPVIVNFSQDKSWRVRYMVANQLYELCEAV 262

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GP+PTR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL+PELAIQHILPCVK+LSSDSS
Sbjct: 263 GPDPTRADLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILSPELAIQHILPCVKDLSSDSS 322

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 323 QHVRSALASVIMGMAPILGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 382

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL SQLGVGFFDDKLGALCMQWLQDKVYSI
Sbjct: 383 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLGSQLGVGFFDDKLGALCMQWLQDKVYSI 442

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANN+KRLAEEFGPEWAMQHI PQVLEM+NNPHYLYRMTIL AISLLAPV+GSEITC
Sbjct: 443 RDAAANNVKRLAEEFGPEWAMQHIVPQVLEMMNNPHYLYRMTILHAISLLAPVLGSEITC 502

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPV++NASKDRVPNIKFNVAKVLQS+IPIVDQ++VEKTIRPCLVEL EDPDVDVRFF
Sbjct: 503 SKLLPVLVNASKDRVPNIKFNVAKVLQSIIPIVDQTVVEKTIRPCLVELGEDPDVDVRFF 562

Query: 368 ATQAIQSIDHVMMS 381
           A QA+QSID+VMMS
Sbjct: 563 ANQALQSIDNVMMS 576

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|683502|emb|CAA57528.1| protein phosphatase 2A 65 kDa regulatory subunit [Arabidopsis thaliana]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/375 (94%), Positives = 367/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQ ILPCVKELSSDSS
Sbjct: 273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQDILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           RDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFF
Sbjct: 513 SKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849722|ref|XP_002892742.1| hypothetical protein ARALYDRAFT_888699 [Arabidopsis lyrata subsp. lyrata] gi|297338584|gb|EFH69001.1| hypothetical protein ARALYDRAFT_888699 [Arabidopsis lyrata subsp. lyrata]

 Score =  726 bits (1875), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 352/375 (93%), Positives = 365/375 (97%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIV FSQDKSWRVRYMVANQLYELCEAV
Sbjct: 213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVTFSQDKSWRVRYMVANQLYELCEAV 272

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           GPEPTR DLVPAY RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS
Sbjct: 273 GPEPTRTDLVPAYARLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
           QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct: 333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
           LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct: 393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query: 248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
           R+AAANNLKRLAEEFGPEWAMQHI PQVLEMINNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct: 453 REAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query: 308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
           S+LLP VI ASKDRVPNIKFNVAK++QSLIPIVDQ++VE  IRPCLVEL+EDPDVDVRFF
Sbjct: 513 SKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRFF 572

Query: 368 ATQAIQSIDHVMMSS 382
           A QA+QSID+VMMSS
Sbjct: 573 ANQALQSIDNVMMSS 587

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2085994	587	PP2AA2 "protein phosphatase 2A	0.981	0.638	0.946	1.9e-186
TAIR|locus:2205354	587	PP2AA3 "AT1G13320" [Arabidopsi	0.981	0.638	0.933	2e-184
TAIR|locus:2031165	588	RCN1 "AT1G25490" [Arabidopsis	0.965	0.627	0.907	6.3e-179
DICTYBASE|DDB_G0283601	584	pppA "protein phosphatase 2A s	0.960	0.628	0.591	9.4e-114
UNIPROTKB|A5D973	589	PPP2R1A "Alpha isoform of regu	0.958	0.621	0.583	4.8e-110
UNIPROTKB|Q32PI5	589	PPP2R1A "Serine/threonine-prot	0.958	0.621	0.583	4.8e-110
UNIPROTKB|P30153	589	PPP2R1A "Serine/threonine-prot	0.958	0.621	0.583	7.8e-110
UNIPROTKB|B3KQV6	410	PPP2R1A "Serine/threonine-prot	0.958	0.892	0.583	7.8e-110
UNIPROTKB|F1PX75	589	PPP2R1A "Uncharacterized prote	0.958	0.621	0.583	1e-109
UNIPROTKB|P54612	589	PPP2R1A "Serine/threonine-prot	0.958	0.621	0.583	1e-109

TAIR|locus:2085994 PP2AA2 "protein phosphatase 2A subunit A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1808 (641.5 bits), Expect = 1.9e-186, P = 1.9e-186
 Identities = 355/375 (94%), Positives = 368/375 (98%)

Query:     8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
             +DQDSVRLLAVEGCAALGKLLEPQDCV HILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct:   213 DDQDSVRLLAVEGCAALGKLLEPQDCVQHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query:    68 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
             GPEPTR +LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE+AIQHILPCVKELSSDSS
Sbjct:   273 GPEPTRTELVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEIAIQHILPCVKELSSDSS 332

Query:   128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
             QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct:   333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query:   188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
             LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV+SI
Sbjct:   393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVHSI 452

Query:   248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
             RDAAANNLKRLAEEFGPEWAMQHI PQVLEM+NNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct:   453 RDAAANNLKRLAEEFGPEWAMQHIVPQVLEMVNNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query:   308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
             S+LLPVV+ ASKDRVPNIKFNVAKVLQSLIPIVDQS+VEKTIRP LVEL+EDPDVDVRFF
Sbjct:   513 SKLLPVVMTASKDRVPNIKFNVAKVLQSLIPIVDQSVVEKTIRPGLVELSEDPDVDVRFF 572

Query:   368 ATQAIQSIDHVMMSS 382
             A QA+QSID+VMMSS
Sbjct:   573 ANQALQSIDNVMMSS 587

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2205354 PP2AA3 "AT1G13320" [Arabidopsis thaliana (taxid:3702)]

 Score = 1789 (634.8 bits), Expect = 2.0e-184, P = 2.0e-184
 Identities = 350/375 (93%), Positives = 365/375 (97%)

Query:     8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
             +DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct:   213 DDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query:    68 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
             GPEPTR DLVPAY RLL DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS
Sbjct:   273 GPEPTRTDLVPAYARLLCDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 332

Query:   128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
             QHVRSALASVIMGMAP+LGKDATIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct:   333 QHVRSALASVIMGMAPVLGKDATIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query:   188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
             LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD+KLGALCMQWLQDKV+SI
Sbjct:   393 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDEKLGALCMQWLQDKVHSI 452

Query:   248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
             R+AAANNLKRLAEEFGPEWAMQHI PQVLEMINNPHYLYRMTILRA+SLLAPVMGSEITC
Sbjct:   453 REAAANNLKRLAEEFGPEWAMQHIVPQVLEMINNPHYLYRMTILRAVSLLAPVMGSEITC 512

Query:   308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
             S+LLP VI ASKDRVPNIKFNVAK++QSLIPIVDQ++VE  IRPCLVEL+EDPDVDVR+F
Sbjct:   513 SKLLPAVITASKDRVPNIKFNVAKMMQSLIPIVDQAVVENMIRPCLVELSEDPDVDVRYF 572

Query:   368 ATQAIQSIDHVMMSS 382
             A QA+QSID+VMMSS
Sbjct:   573 ANQALQSIDNVMMSS 587

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0042325 "regulation of phosphorylation" evidence=ISS

TAIR|locus:2031165 RCN1 "AT1G25490" [Arabidopsis thaliana (taxid:3702)]

 Score = 1737 (616.5 bits), Expect = 6.3e-179, P = 6.3e-179
 Identities = 335/369 (90%), Positives = 358/369 (97%)

Query:     8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
             +DQDSVRLLAVEGCAALGKLLEPQDCVA ILPVIVNFSQDKSWRVRYMVANQLYELCEAV
Sbjct:   213 DDQDSVRLLAVEGCAALGKLLEPQDCVARILPVIVNFSQDKSWRVRYMVANQLYELCEAV 272

Query:    68 GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
             GP+ TR DLVPAYVRLLRDNEAEVRIAAAGKVTKFCR+LNPELAIQHILPCVKELSSDSS
Sbjct:   273 GPDCTRTDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRLLNPELAIQHILPCVKELSSDSS 332

Query:   128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
             QHVRSALASVIMGMAP+LGKD+TIE LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID
Sbjct:   333 QHVRSALASVIMGMAPILGKDSTIEHLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 392

Query:   188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI 247
             LLSQSLLPAIVELAEDRHWRVRLAIIEY+PLLASQLG+GFFDDKLGALCMQWLQDKVYSI
Sbjct:   393 LLSQSLLPAIVELAEDRHWRVRLAIIEYVPLLASQLGIGFFDDKLGALCMQWLQDKVYSI 452

Query:   248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITC 307
             R+AAANNLKRLAEEFGPEWAMQH+ PQVL+M+NNPHYL+RM +LRAISL+APVMGSEITC
Sbjct:   453 REAAANNLKRLAEEFGPEWAMQHLVPQVLDMVNNPHYLHRMMVLRAISLMAPVMGSEITC 512

Query:   308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF 367
             S+ LPVV+ ASKDRVPNIKFNVAK+LQSLIPIVDQS+V+KTIR CLV+L+EDPDVDVR+F
Sbjct:   513 SKFLPVVVEASKDRVPNIKFNVAKLLQSLIPIVDQSVVDKTIRQCLVDLSEDPDVDVRYF 572

Query:   368 ATQAIQSID 376
             A QA+ SID
Sbjct:   573 ANQALNSID 581

GO:0009723 "response to ethylene stimulus" evidence=IMP

GO:0009926 "auxin polar transport" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009738 "abscisic acid mediated signaling pathway" evidence=TAS

GO:0009789 "positive regulation of abscisic acid mediated signaling pathway" evidence=IMP

GO:0010119 "regulation of stomatal movement" evidence=IMP

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009637 "response to blue light" evidence=RCA

GO:0009640 "photomorphogenesis" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=IMP

GO:0000159 "protein phosphatase type 2A complex" evidence=TAS

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=IGI;ISS

DICTYBASE|DDB_G0283601 pppA "protein phosphatase 2A scaffold subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 1122 (400.0 bits), Expect = 9.4e-114, P = 9.4e-114
 Identities = 217/367 (59%), Positives = 287/367 (78%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             +++QDSVRLL VE CA LG +L  ++ +  ILP I   S DKSWRVRYMVA  L ELCE+
Sbjct:   216 TDEQDSVRLLGVENCALLGSMLTNEENIQFILPTIKASSLDKSWRVRYMVARLLKELCES 275

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
             +G E T+ +L+ A+V+LL+D EAEVR  A+ ++   C +L  E+ I+ ILPCVK+L SDS
Sbjct:   276 MGTEITKTELIGAFVKLLKDTEAEVRTEASLRIADVCSLLTKEMNIKTILPCVKDLVSDS 335

Query:   127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
             SQHVR+ALA VIM +AP+ GK+ T+  LL +FL LLKD+FPDVRLNIISKLDQV++VIGI
Sbjct:   336 SQHVRAALAQVIMSLAPIYGKEDTLTHLLELFLHLLKDDFPDVRLNIISKLDQVSKVIGI 395

Query:   187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 246
             ++LSQSLLPAIVELAED  WRVRLAII+YIPLLASQLGV FFD+KLG LCM WL D V+S
Sbjct:   396 EMLSQSLLPAIVELAEDHQWRVRLAIIDYIPLLASQLGVEFFDEKLGNLCMTWLGDPVFS 455

Query:   247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 306
             IR+AA NNLK+L E FG +WA  +I P+VL + ++P+YLYRMT L +IS L+ V+G ++ 
Sbjct:   456 IREAATNNLKKLTEVFGVDWAKNNIIPKVLSLHSHPNYLYRMTTLFSISTLSTVVGGDVI 515

Query:   307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRF 366
              S ++P++     D+VPNI+FNVAK  Q++IP++D ++V+  ++P LV+L ED D DV+F
Sbjct:   516 SSSMVPLLAKMVSDKVPNIRFNVAKTFQTIIPLLDSTIVQSRVKPLLVKLHEDTDKDVKF 575

Query:   367 FATQAIQ 373
             +A+QA+Q
Sbjct:   576 YASQALQ 582

GO:0005813 "centrosome" evidence=TAS

GO:0005829 "cytosol" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0017018 "myosin phosphatase activity" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0031034 "myosin filament assembly" evidence=IDA

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|A5D973 PPP2R1A "Alpha isoform of regulatory subunit A, protein phosphatase 2" [Bos taurus (taxid:9913)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 216/370 (58%), Positives = 284/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:   214 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 273

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:   274 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKEL 333

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD+TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   334 VSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 393

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   394 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 453

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   454 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 513

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   514 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKLTQDQDV 573

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   574 DVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|Q32PI5 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Bos taurus (taxid:9913)]

 Score = 1087 (387.7 bits), Expect = 4.8e-110, P = 4.8e-110
 Identities = 216/370 (58%), Positives = 284/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:   214 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELHKA 273

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:   274 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKEL 333

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD+TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   334 VSDANQHVKSALASVIMGLSPILGKDSTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 393

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   394 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 453

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   454 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 513

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   514 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPVLEKLTQDQDV 573

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   574 DVKYFAQEAL 583

GO:0005737 "cytoplasm" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

UNIPROTKB|P30153 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 216/370 (58%), Positives = 283/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:   214 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 273

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:   274 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 333

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   334 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 393

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   394 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 453

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   454 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 513

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   514 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 573

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   574 DVKYFAQEAL 583

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0008601 "protein phosphatase type 2A regulator activity" evidence=TAS

GO:0006470 "protein dephosphorylation" evidence=TAS

GO:0015630 "microtubule cytoskeleton" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0010033 "response to organic substance" evidence=NAS

GO:0006672 "ceramide metabolic process" evidence=NAS

GO:0006917 "induction of apoptosis" evidence=TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0008380 "RNA splicing" evidence=NAS

GO:0006275 "regulation of DNA replication" evidence=NAS

GO:0045595 "regulation of cell differentiation" evidence=NAS

GO:0030111 "regulation of Wnt receptor signaling pathway" evidence=NAS

GO:0000188 "inactivation of MAPK activity" evidence=NAS

GO:0042518 "negative regulation of tyrosine phosphorylation of Stat3 protein" evidence=NAS

GO:0030155 "regulation of cell adhesion" evidence=NAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0003823 "antigen binding" evidence=IPI

GO:0000159 "protein phosphatase type 2A complex" evidence=IDA;TAS

GO:0019932 "second-messenger-mediated signaling" evidence=NAS

GO:0040008 "regulation of growth" evidence=NAS

GO:0030308 "negative regulation of cell growth" evidence=NAS

GO:0007059 "chromosome segregation" evidence=IDA

GO:0000775 "chromosome, centromeric region" evidence=IDA

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

UNIPROTKB|B3KQV6 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Homo sapiens (taxid:9606)]

 Score = 1085 (387.0 bits), Expect = 7.8e-110, P = 7.8e-110
 Identities = 216/370 (58%), Positives = 283/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:    35 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 94

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:    95 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 154

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   155 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 214

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   215 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 274

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   275 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 334

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   335 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 394

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   395 DVKYFAQEAL 404

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

UNIPROTKB|F1PX75 PPP2R1A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 216/370 (58%), Positives = 283/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:   214 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 273

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:   274 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKEL 333

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   334 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 393

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   394 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 453

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   454 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 513

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   514 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 573

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   574 DVKYFAQEAL 583

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

UNIPROTKB|P54612 PPP2R1A "Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform" [Sus scrofa (taxid:9823)]

 Score = 1084 (386.6 bits), Expect = 1.0e-109, P = 1.0e-109
 Identities = 216/370 (58%), Positives = 283/370 (76%)

Query:     7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct:   214 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 273

Query:    67 VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
             VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  ILPC+KEL
Sbjct:   274 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQILPCIKEL 333

Query:   123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
              SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct:   334 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 393

Query:   183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
             VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct:   394 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 453

Query:   243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
              VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct:   454 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 513

Query:   303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
              +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct:   514 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 573

Query:   363 DVRFFATQAI 372
             DV++FA +A+
Sbjct:   574 DVKYFAQEAL 583

GO:0000775 "chromosome, centromeric region" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0070262 "peptidyl-serine dephosphorylation" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0003823 "antigen binding" evidence=IEA

GO:0000159 "protein phosphatase type 2A complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36179	2AAA_DROME	No assigned EC number	0.5671	0.9397	0.6074	yes	no
P36875	2AAA_PEA	No assigned EC number	0.8936	0.9816	0.9493	N/A	no
Q32PI5	2AAA_BOVIN	No assigned EC number	0.5771	0.9738	0.6315	yes	no
P30153	2AAA_HUMAN	No assigned EC number	0.5771	0.9738	0.6315	yes	no
P54612	2AAA_PIG	No assigned EC number	0.5771	0.9738	0.6315	yes	no
Q38950	2AAB_ARATH	No assigned EC number	0.9466	0.8769	0.5706	yes	no
Q76MZ3	2AAA_MOUSE	No assigned EC number	0.5771	0.9738	0.6315	yes	no
Q9UT08	2AAA_SCHPO	No assigned EC number	0.5013	0.9685	0.6271	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_scaffold_203000013 hypothetical protein (587 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	7e-04

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 38.8 bits (91), Expect = 7e-04
 Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)

Query: 73  RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKELSSDSSQH 129
           +   +PA V LL  ++  V+  AA  ++      N  +        LP + +L     + 
Sbjct: 5   QAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEE 64

Query: 130 VRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNI 173
           V  A       +                +P  ++LL     D++ N 
Sbjct: 65  VVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNA 111

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	100.0
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	99.97
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.95
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.94
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.92
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.9
PRK09687	280	putative lyase; Provisional	99.9
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.89
PRK09687	280	putative lyase; Provisional	99.89
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.87
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.86
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.86
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	99.85
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.84
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.83
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.83
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.82
KOG1242	569	consensus Protein containing adaptin N-terminal re	99.82
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.82
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	99.81
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.8
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.79
KOG0212	675	consensus Uncharacterized conserved protein [Funct	99.78
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.78
KOG1824	1233	consensus TATA-binding protein-interacting protein	99.77
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.77
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.77
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.74
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	99.73
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.72
PTZ00429	746	beta-adaptin; Provisional	99.72
PTZ00429	746	beta-adaptin; Provisional	99.72
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.62
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	99.62
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	99.62
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.61
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.59
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.54
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.53
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.47
COG1413	335	FOG: HEAT repeat [Energy production and conversion	99.47
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.46
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.46
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.45
KOG1243	690	consensus Protein kinase [General function predict	99.44
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.43
TIGR02270	410	conserved hypothetical protein. Members are found	99.41
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	99.41
TIGR02270	410	conserved hypothetical protein. Members are found	99.36
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.34
KOG2259	823	consensus Uncharacterized conserved protein [Funct	99.33
KOG1243	690	consensus Protein kinase [General function predict	99.32
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	99.3
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	99.3
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.29
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.26
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	99.25
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	99.22
COG5096	757	Vesicle coat complex, various subunits [Intracellu	99.18
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	99.17
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	99.15
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.12
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	99.09
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	99.08
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	99.06
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	99.06
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	99.04
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.0
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.98
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	98.96
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.94
COG5096	757	Vesicle coat complex, various subunits [Intracellu	98.94
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.92
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	98.91
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	98.9
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	98.88
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	98.87
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.87
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	98.86
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.83
KOG2137	700	consensus Protein kinase [Signal transduction mech	98.82
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.79
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.79
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	98.77
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.75
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	98.74
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	98.73
KOG0567	289	consensus HEAT repeat-containing protein [General	98.73
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.72
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.69
PF05804	708	KAP: Kinesin-associated protein (KAP)	98.68
KOG0567	289	consensus HEAT repeat-containing protein [General	98.67
KOG2032	533	consensus Uncharacterized conserved protein [Funct	98.67
KOG2956	516	consensus CLIP-associating protein [General functi	98.65
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	98.65
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.65
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.64
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.62
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	98.6
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	98.59
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.58
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	98.53
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	98.52
KOG2025	892	consensus Chromosome condensation complex Condensi	98.51
KOG2025	892	consensus Chromosome condensation complex Condensi	98.51
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	98.51
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.46
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.46
PF05004	309	IFRD: Interferon-related developmental regulator (	98.45
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.43
PF05004	309	IFRD: Interferon-related developmental regulator (	98.42
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.41
KOG2062	929	consensus 26S proteasome regulatory complex, subun	98.41
KOG2956	516	consensus CLIP-associating protein [General functi	98.41
KOG4653	982	consensus Uncharacterized conserved protein [Funct	98.4
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.39
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	98.36
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	98.36
COG5098	1128	Chromosome condensation complex Condensin, subunit	98.35
KOG1949	1005	consensus Uncharacterized conserved protein [Funct	98.34
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	98.33
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.31
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.31
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.29
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	98.27
KOG0413	1529	consensus Uncharacterized conserved protein relate	98.25
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.19
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	98.19
KOG1992	960	consensus Nuclear export receptor CSE1/CAS (import	98.18
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.17
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.14
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.13
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	98.11
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.1
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	98.09
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	98.07
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.07
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	98.06
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	98.04
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.04
KOG1525	1266	consensus Sister chromatid cohesion complex Cohesi	98.03
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	98.03
COG5116	926	RPN2 26S proteasome regulatory complex component [	98.02
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.0
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	97.95
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.92
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.91
KOG0413	1529	consensus Uncharacterized conserved protein relate	97.9
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	97.88
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.84
COG5116	926	RPN2 26S proteasome regulatory complex component [	97.81
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.75
PF13001	501	Ecm29: Proteasome stabiliser; InterPro: IPR024372	97.74
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	97.71
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.71
KOG2933	334	consensus Uncharacterized conserved protein [Funct	97.7
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.68
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	97.66
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	97.61
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.61
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	97.57
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	97.54
KOG0414	1251	consensus Chromosome condensation complex Condensi	97.46
KOG1822	2067	consensus Uncharacterized conserved protein [Funct	97.4
COG5656	970	SXM1 Importin, protein involved in nuclear import	97.4
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	97.37
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.29
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.28
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	97.28
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.26
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	97.23
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	97.21
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	97.19
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	97.12
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	97.1
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	97.09
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.07
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	97.07
PF13251	182	DUF4042: Domain of unknown function (DUF4042)	97.07
COG5098	1128	Chromosome condensation complex Condensin, subunit	97.05
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	97.04
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	96.98
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	96.97
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	96.96
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	96.93
PF12074	339	DUF3554: Domain of unknown function (DUF3554); Int	96.93
PF10274	183	ParcG: Parkin co-regulated protein; InterPro: IPR0	96.88
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	96.85
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	96.85
COG5656	970	SXM1 Importin, protein involved in nuclear import	96.85
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	96.77
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	96.72
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.69
KOG2011	1048	consensus Sister chromatid cohesion complex Cohesi	96.68
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	96.66
KOG0392	1549	consensus SNF2 family DNA-dependent ATPase domain-	96.62
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	96.54
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	96.49
cd08050	343	TAF6 TATA Binding Protein (TBP) Associated Factor	96.48
KOG2081	559	consensus Nuclear transport regulator [Intracellul	96.4
KOG1048	717	consensus Neural adherens junction protein Plakoph	96.4
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	96.4
PF01603	409	B56: Protein phosphatase 2A regulatory B subunit (	96.37
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	96.37
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	96.33
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	96.31
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	96.31
PF12231	372	Rif1_N: Rap1-interacting factor 1 N terminal; Inte	96.28
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	96.28
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	96.26
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	96.15
KOG2229	616	consensus Protein required for actin cytoskeleton	96.1
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	96.01
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.9
KOG2549	576	consensus Transcription initiation factor TFIID, s	95.9
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.88
PF07571	92	DUF1546: Protein of unknown function (DUF1546); In	95.84
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	95.73
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.7
KOG2213	460	consensus Apoptosis inhibitor 5/fibroblast growth	95.7
KOG2549	576	consensus Transcription initiation factor TFIID, s	95.66
KOG2973	353	consensus Uncharacterized conserved protein [Funct	95.62
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.54
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	95.53
PF05536	543	Neurochondrin: Neurochondrin	95.51
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	95.51
PF03378	435	CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: I	95.45
KOG0889	3550	consensus Histone acetyltransferase SAGA, TRRAP/TR	95.44
PF08389	148	Xpo1: Exportin 1-like protein; InterPro: IPR013598	95.38
PF12054	441	DUF3535: Domain of unknown function (DUF3535); Int	95.37
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	95.37
KOG1993	978	consensus Nuclear transport receptor KAP120 (impor	95.33
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	95.2
KOG2081	559	consensus Nuclear transport regulator [Intracellul	95.11
KOG2149	393	consensus Uncharacterized conserved protein [Funct	95.08
KOG2149	393	consensus Uncharacterized conserved protein [Funct	95.06
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.96
KOG1851	1710	consensus Uncharacterized conserved protein [Funct	94.92
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	94.8
PF08713	213	DNA_alkylation: DNA alkylation repair enzyme; Inte	94.79
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	94.79
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.78
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	94.74
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	94.71
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	94.55
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	94.54
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	94.53
PF08161	198	NUC173: NUC173 domain; InterPro: IPR012978 This is	94.5
cd03561	133	VHS VHS domain family; The VHS domain is present i	94.49
KOG2005	878	consensus 26S proteasome regulatory complex, subun	94.49
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	94.47
KOG2022	982	consensus Nuclear transport receptor LGL2 (importi	94.46
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	94.42
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.32
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	94.23
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	94.07
KOG2021	980	consensus Nuclear mRNA export factor receptor LOS1	94.0
PF12830	187	Nipped-B_C: Sister chromatid cohesion C-terminus	93.99
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.89
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	93.86
PF05536	543	Neurochondrin: Neurochondrin	93.79
COG5234	993	CIN1 Beta-tubulin folding cofactor D [Posttranslat	93.72
COG5095	450	TAF6 Transcription initiation factor TFIID, subuni	93.72
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	93.7
KOG0891	2341	consensus DNA-dependent protein kinase [Replicatio	93.61
KOG4524	1014	consensus Uncharacterized conserved protein [Funct	93.57
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	93.56
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	93.54
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	93.5
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	93.46
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.4
PF12765	42	Cohesin_HEAT: HEAT repeat associated with sister c	93.39
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	93.34
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.31
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	93.29
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	93.27
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	93.24
cd03561	133	VHS VHS domain family; The VHS domain is present i	93.21
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	93.09
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	92.98
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	92.85
KOG2005	878	consensus 26S proteasome regulatory complex, subun	92.83
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	92.7
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	92.54
PF08623	169	TIP120: TATA-binding protein interacting (TIP20);	91.96
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	91.92
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	91.76
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	91.63
KOG2153	704	consensus Protein involved in the nuclear export o	91.58
PF04118	307	Dopey_N: Dopey, N-terminal; InterPro: IPR007249 Do	91.56
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	91.43
PF08064	107	UME: UME (NUC010) domain; InterPro: IPR012993 This	91.31
KOG0803	1312	consensus Predicted E3 ubiquitin ligase [Posttrans	91.26
COG5101	1053	CRM1 Importin beta-related nuclear transport recep	90.89
cd03565	141	VHS_Tom1 VHS domain family, Tom1 subfamily; The VH	90.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	90.27
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	89.99
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	89.48
COG2733	415	Predicted membrane protein [Function unknown]	89.28
COG5369	743	Uncharacterized conserved protein [Function unknow	89.09
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	88.55
KOG4646	173	consensus Uncharacterized conserved protein, conta	88.45
KOG1877	819	consensus Putative transmembrane protein cmp44E [G	88.37
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	88.28
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.88
PF14868	559	DUF4487: Domain of unknown function (DUF4487)	87.69
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.62
smart00567	30	EZ_HEAT E-Z type HEAT repeats. Present in subunits	87.57
KOG2199	462	consensus Signal transducing adaptor protein STAM/	87.56
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	87.48
cd00197	115	VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamil	87.45
PF12397	121	U3snoRNP10: U3 small nucleolar RNA-associated prot	87.39
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	87.18
KOG2229	616	consensus Protein required for actin cytoskeleton	87.15
COG5369	743	Uncharacterized conserved protein [Function unknow	86.59
PF12612	193	TFCD_C: Tubulin folding cofactor D C terminal; Int	86.48
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	86.36
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.93
KOG2199	462	consensus Signal transducing adaptor protein STAM/	85.81
KOG1932	1180	consensus TATA binding protein associated factor [	85.79
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	85.15
PF09324	86	DUF1981: Domain of unknown function (DUF1981); Int	85.13
COG5537	740	IRR1 Cohesin [Cell division and chromosome partiti	84.65
KOG3036	293	consensus Protein involved in cell differentiation	84.52
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	84.17
COG5110	881	RPN1 26S proteasome regulatory complex component [	83.76
KOG2153	704	consensus Protein involved in the nuclear export o	83.28
cd07064	208	AlkD_like_1 A new structural DNA glycosylase conta	82.64
smart00802	107	UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1.	82.23
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	82.21
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	81.82
cd06561	197	AlkD_like A new structural DNA glycosylase. This d	81.58
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	81.12
KOG1087	470	consensus Cytosolic sorting protein GGA2/TOM1 [Int	80.36

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=100.00  E-value=2.1e-34  Score=264.78  Aligned_cols=378  Identities=51%  Similarity=0.746  Sum_probs=327.9

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChh-hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ-DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY   80 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l   80 (382)
                      +.+|..|+...||..|...+..+...+..+ .....+.+.+.+..+|++|++|....+....+...++++.......+.+
T Consensus       281 ~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~  360 (759)
T KOG0211|consen  281 LIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPV  360 (759)
T ss_pred             HhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhH
Confidence            456666777777777777777777766655 5566677777777777777777777777777777777766666667777


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhC----HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHH
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  156 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~----~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  156 (382)
                      ...++|+.+++|.+...-...++....    .+...+.++|.+..++.|.+..||.+.+.....+...+|.+...+.+.|
T Consensus       361 ~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp  440 (759)
T KOG0211|consen  361 SNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPKERTISELLP  440 (759)
T ss_pred             HHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCcCcCccccCh
Confidence            777777777777777777777766665    3345567889999999999999999999999999999998888899999


Q ss_pred             HHHHhhcCCChHHHHHHHH---hhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          157 IFLSLLKDEFPDVRLNIIS---KLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       157 ~l~~~l~d~~~~vr~~~~~---~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      .+...++|+++.||.+...   .+..+....|.+...+..+|.+..+..|.+|++|.++.+.++.++...|.+++.+.+.
T Consensus       441 ~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~  520 (759)
T KOG0211|consen  441 LLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLA  520 (759)
T ss_pred             hhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHH
Confidence            9999999999999999994   4445556677788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  313 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~  313 (382)
                      +.+..++.|....+|++|+..+..++..+|.++....++|.++.+..+++|.+|.+.+.++..+++.+|.+.+.+.++|.
T Consensus       521 ~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~  600 (759)
T KOG0211|consen  521 ELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPV  600 (759)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814          314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                      +..+.+|++++||..+++.|..+...+........+.|.+..+..|++.+||..|..|++.+....
T Consensus       601 ~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l~~  666 (759)
T KOG0211|consen  601 FLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIELSR  666 (759)
T ss_pred             HHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988888999999999999999999999999999887543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=99.97  E-value=4.4e-30  Score=236.48  Aligned_cols=379  Identities=19%  Similarity=0.290  Sum_probs=345.9

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAY   80 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l   80 (382)
                      .++|++|.+|.||..+++-++.+++.++.+...+.++|.+.++..|....||.++...+..+...+... ...+.+.+.+
T Consensus       242 ~~~lc~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l  321 (759)
T KOG0211|consen  242 VQSLCQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESL  321 (759)
T ss_pred             HHhhccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHH
Confidence            468999999999999999999999999998889999999999999999999999999999999999887 6667899999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC----hHhHHHhhHH
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG----KDATIEQLLP  156 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~----~~~~~~~l~~  156 (382)
                      ++..+|.+|.+|....+....+.+.++++.......+.+..+++|..+.+|.+.+.-...++....    .....+.++|
T Consensus       322 ~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp  401 (759)
T KOG0211|consen  322 VQAVEDGSWRVSYMVADKFSELSSAVGPSATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILP  401 (759)
T ss_pred             HHHhcChhHHHHHHHhhhhhhHHHHhccccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhH
Confidence            999999999999999999999999988865555678899999999999999999999999988777    3334577889


Q ss_pred             HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH---hhhchhhhHHHHH
Q 016814          157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLG  233 (382)
Q Consensus       157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~  233 (382)
                      .+..++.|.+..||...+..+..+....|.+.....++|.+...++|..+.||..+...+..+-   ...|.....+.++
T Consensus       402 ~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slL  481 (759)
T KOG0211|consen  402 EVQVLVLDNALHVRSALASVITGLSPILPKERTISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLL  481 (759)
T ss_pred             HHHHHHhcccchHHHHHhccccccCccCCcCcCccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhh
Confidence            9999999999999999999998888888888777889999999999999999999996664443   3446777778999


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  313 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~  313 (382)
                      |.+..+-.|..|++|.+..+.+..++...|.+.+.+.+-+.+..++.|..+.+|.+++..+..++..+|.++....++|.
T Consensus       482 p~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~~~~i~k  561 (759)
T KOG0211|consen  482 PAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWLPDHVYSIREAAARNLPALVETFGSEWARLEEIPK  561 (759)
T ss_pred             hhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhHHHhhHH
Confidence            99999999999999999999999999999988888888999999999999999999999999999999988899999999


Q ss_pred             HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ++....++++.+|.+.+.++..++..+|.+.+...++|.+..+..|++++||.++++.+..+.+.+.
T Consensus       562 ~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~  628 (759)
T KOG0211|consen  562 LLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLD  628 (759)
T ss_pred             HHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999999999999999999999999999999999988765

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=9.5e-25  Score=203.29  Aligned_cols=379  Identities=21%  Similarity=0.234  Sum_probs=297.9

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPA   79 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~   79 (382)
                      |.....+..+.||+..++.+..+++...++ .|+++++++.+..+++++..|+.+...|..+...+|....  ...+.+.
T Consensus        85 L~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~l  163 (1075)
T KOG2171|consen   85 LEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRL  163 (1075)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHH
Confidence            455678889999999999999999998777 8999999999999999999999999999999999998543  3468999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhC--HH--HHHHhhhHhh----hhhcCCCchHHHHHHHHHHHhhccccChH--h
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILN--PE--LAIQHILPCV----KELSSDSSQHVRSALASVIMGMAPLLGKD--A  149 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~--~~~~~il~~l----~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~  149 (382)
                      |.+.+.|++..||.+++++++.++....  +.  .....++|.+    .+.+++.+...-..+.+++..++...++-  .
T Consensus       164 f~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~  243 (1075)
T KOG2171|consen  164 FSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRP  243 (1075)
T ss_pred             HHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHH
Confidence            9999999998899999999999999885  22  1223455544    44566667766777888888877655531  1


Q ss_pred             HHHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhch-----hhHhhhHHHHHHHHh----cCCCc------------
Q 016814          150 TIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGI-----DLLSQSLLPAIVELA----EDRHW------------  206 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~-----~~~~~~llp~l~~~~----~d~~~------------  206 (382)
                      ....++.+..+..++.  ++.+|..++..+..+.++.+.     ..+.+.++|.+..+.    .|+.|            
T Consensus       244 ~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~  323 (1075)
T KOG2171|consen  244 HLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEE  323 (1075)
T ss_pred             HHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhcccccccccccc
Confidence            2356666666776664  589999999999888776221     113356666666654    22222            


Q ss_pred             hHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcch
Q 016814          207 RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHY  284 (382)
Q Consensus       207 ~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~  284 (382)
                      .-...+.+++..++.++|++...+.+++.+..++.+++|.-|.+++.+++.+++.++.  ....+.++|.+++.++|+++
T Consensus       324 ~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dphp  403 (1075)
T KOG2171|consen  324 TPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHP  403 (1075)
T ss_pred             CcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCH
Confidence            2456788899999999999999999999999999999999999999999999987654  22456788999999999999


Q ss_pred             HHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHhhhhhHHHHHHhHHH----HHHHh
Q 016814          285 LYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIPIVDQSMVEKTIRP----CLVEL  356 (382)
Q Consensus       285 ~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~----~l~~l  356 (382)
                      +||.+|+.+++++++.+.+.   .+.+.+.|.++..+.|+ ++.|...|+.++-.+.+....+.+..++-+    .+..+
T Consensus       404 rVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L  483 (1075)
T KOG2171|consen  404 RVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLL  483 (1075)
T ss_pred             HHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999875   45567777888877766 457888889898888877766554443333    33345


Q ss_pred             cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          357 TEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       357 ~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ...+.+.||..+..|++.++...+.
T Consensus       484 ~~~~~~~v~e~vvtaIasvA~AA~~  508 (1075)
T KOG2171|consen  484 LQSSKPYVQEQAVTAIASVADAAQE  508 (1075)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHhh
Confidence            6778889999999999999988764

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.1e-23  Score=196.18  Aligned_cols=371  Identities=16%  Similarity=0.223  Sum_probs=290.0

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY   80 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l   80 (382)
                      +-+.++|++|..|+-.+.++....-+   .+..+.+...+... .++..+.||+..++.++.+++...++ .+.++++.+
T Consensus        45 ~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L  123 (1075)
T KOG2171|consen   45 LATSADPQVRQLAAVLLRKLLTKHWSRLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFL  123 (1075)
T ss_pred             HhcCCChHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence            45567899999999888877764211   33445555544444 46888999999999999999998888 789999999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHh------H
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDA------T  150 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~------~  150 (382)
                      ++..+++++..|+.|+..|.++...++..  .+...+.+.+.+.+.|++..||..++++++.++..++  +..      .
T Consensus       124 ~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~l  203 (1075)
T KOG2171|consen  124 FQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDL  203 (1075)
T ss_pred             HHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            99999999999999999999999888765  4566889999999999998899999999999998885  221      1


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCC--CchHHHHHHHHhHHHHhhhch-
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGV-  225 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~-  225 (382)
                      .+.++..+.+.+.+.+...-..++.++..+....++  ......++....+..+++  +..+|..+++.+..+++.... 
T Consensus       204 lP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~  283 (1075)
T KOG2171|consen  204 LPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAM  283 (1075)
T ss_pred             hHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHH
Confidence            234444555566777777788888888888766543  111245555556666554  567999999999888775321 


Q ss_pred             ----hhhHHHHHHHHHHHhcc----chh------------HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchH
Q 016814          226 ----GFFDDKLGALCMQWLQD----KVY------------SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  285 (382)
Q Consensus       226 ----~~~~~~l~~~l~~~l~d----~~~------------~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  285 (382)
                          ..+.+.+++.+..++.|    ++|            .....|.+++..++..+|++.....+++.+..++.+++|.
T Consensus       284 ~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~  363 (1075)
T KOG2171|consen  284 CKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWK  363 (1075)
T ss_pred             hhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHH
Confidence                11445677777666532    111            2566789999999999999888888999999999999999


Q ss_pred             HHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCC
Q 016814          286 YRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDP  360 (382)
Q Consensus       286 ~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~  360 (382)
                      .|.+++.+++.+++.++..  ...++++|.++++++|++|.||.+|+.++|++...+.+.   .+.+.+.|.|.....|+
T Consensus       364 ~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~  443 (1075)
T KOG2171|consen  364 ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDST  443 (1075)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhccc
Confidence            9999999999999998854  467899999999999999999999999999999999875   45678888888887775


Q ss_pred             -CccHHhHHHHHHHHHH
Q 016814          361 -DVDVRFFATQAIQSID  376 (382)
Q Consensus       361 -~~~vr~~a~~al~~~~  376 (382)
                       +++|..+|+.|+-.+.
T Consensus       444 ~~~rV~ahAa~al~nf~  460 (1075)
T KOG2171|consen  444 QNVRVQAHAAAALVNFS  460 (1075)
T ss_pred             CchHHHHHHHHHHHHHH
Confidence             4588888888887654

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=2.8e-23  Score=182.36  Aligned_cols=374  Identities=14%  Similarity=0.171  Sum_probs=282.4

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-------cccchH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLV   77 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ll   77 (382)
                      -+.|.++.+|....-.+..++..-+ -..|++++|.+.+++..++....+.+..+|.++++......       -..-++
T Consensus        98 ~lgd~~~lIr~tvGivITTI~s~~~-~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mi  176 (885)
T KOG2023|consen   98 GLGDASPLIRATVGIVITTIASTGG-LQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMI  176 (885)
T ss_pred             hccCchHHHHhhhhheeeeeecccc-cccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhH
Confidence            4678889999887777777766443 35589999999999999999999999999999998654311       123489


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ  153 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  153 (382)
                      |.++++.+++++.+|..|+.++..++...+..  ...+.++..+..+.+|.++.||...|.++..+.+.-.+..  ....
T Consensus       177 pkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~  256 (885)
T KOG2023|consen  177 PKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDN  256 (885)
T ss_pred             HHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHH
Confidence            99999999999999999999999987655544  4456788999999999999999999999999886655432  2356


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-h---hHhhhHHHHHHHH----------hc-----------------
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-D---LLSQSLLPAIVEL----------AE-----------------  202 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-~---~~~~~llp~l~~~----------~~-----------------  202 (382)
                      ++.++.....|.+++|...+++....+++.--. +   .+...++|.+.+-          ++                 
T Consensus       257 IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkP  336 (885)
T KOG2023|consen  257 IVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKP  336 (885)
T ss_pred             HHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccc
Confidence            777788888999999999999988887654211 1   1224555655432          11                 


Q ss_pred             -------------------C----------CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHH
Q 016814          203 -------------------D----------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN  253 (382)
Q Consensus       203 -------------------d----------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~  253 (382)
                                         +          .+|..|+..+..+..++..+|.+.. +.++|.+...|..++|.||++++-
T Consensus       337 Rfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL-~~l~PlLk~~L~~~~W~vrEagvL  415 (885)
T KOG2023|consen  337 RFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELL-PILLPLLKEHLSSEEWKVREAGVL  415 (885)
T ss_pred             hhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHH-HHHHHHHHHHcCcchhhhhhhhHH
Confidence                               0          1389999999999999887777654 578888888888899999999999


Q ss_pred             HHHHHHHHhCh--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHH
Q 016814          254 NLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFN  328 (382)
Q Consensus       254 ~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~  328 (382)
                      ++|.+++.+-.  -.....++|.+++.+.|+.+-||...++.+++.++..-.   +.+...++..+++.+-|.+..|+.+
T Consensus       416 AlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~llD~NK~VQEA  495 (885)
T KOG2023|consen  416 ALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRLLDSNKKVQEA  495 (885)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHHhcccHHHHHH
Confidence            99999986532  224456899999999999999999999999998876543   2466677777888888999999999


Q ss_pred             HHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHHHHHhcc
Q 016814          329 VAKVLQSLIPIVDQS--MVEKTIRPCLVELTED-PDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       329 a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      |+.+++.+-+.-+.+  .+...++..+.....- +..++ .-...|++.+++..|+
T Consensus       496 AcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KNL-lILYDAIgtlAdsvg~  550 (885)
T KOG2023|consen  496 ACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKNL-LILYDAIGTLADSVGH  550 (885)
T ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcce-ehHHHHHHHHHHHHHH
Confidence            999999888777654  2334455544443322 22232 2456777888777764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=9.1e-23  Score=179.15  Aligned_cols=347  Identities=20%  Similarity=0.217  Sum_probs=267.1

Q ss_pred             hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---
Q 016814           33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---  109 (382)
Q Consensus        33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---  109 (382)
                      ..+++-.-+...+.|.++.+|...--.+..++..-+-. .+.+++|.+.+++.+++....+.|+.+|.++++.....   
T Consensus        87 ~~~yiKs~~l~~lgd~~~lIr~tvGivITTI~s~~~~~-~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds  165 (885)
T KOG2023|consen   87 VLDYIKSECLHGLGDASPLIRATVGIVITTIASTGGLQ-HWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDS  165 (885)
T ss_pred             HHHHHHHHHHhhccCchHHHHhhhhheeeeeecccccc-cchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhh
Confidence            34445555556677888888877666666655433333 35789999999999999999999999999998754322   


Q ss_pred             ----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          110 ----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       110 ----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                          ...+.++|.+.++.+++++.+|..++.++..+.-.-....  ..+.++..+..+.+|++++||+.++.++.-+.+.
T Consensus       166 ~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llev  245 (885)
T KOG2023|consen  166 DVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEV  245 (885)
T ss_pred             hcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHh
Confidence                2346789999999999999999999999998875443222  3478888888999999999999999999888766


Q ss_pred             hchhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhh---hHHHHHHHHHHH----------hc------
Q 016814          184 IGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF---FDDKLGALCMQW----------LQ------  241 (382)
Q Consensus       184 ~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~---~~~~l~~~l~~~----------l~------  241 (382)
                      ....-.  ...++..+.+..+|.+..|-..+++....+++.- .++.   +.++++|++...          ++      
T Consensus       246 r~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~  325 (885)
T KOG2023|consen  246 RPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDE  325 (885)
T ss_pred             cHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccc
Confidence            432111  1345566666678999999999999888887643 2222   235677776532          22      


Q ss_pred             ------------------------------c----------chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC
Q 016814          242 ------------------------------D----------KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  281 (382)
Q Consensus       242 ------------------------------d----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~  281 (382)
                                                    |          .+|..|++++.++.-++..+|.+ ....++|.+.+.+.+
T Consensus       326 ~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~e-lL~~l~PlLk~~L~~  404 (885)
T KOG2023|consen  326 SVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDE-LLPILLPLLKEHLSS  404 (885)
T ss_pred             cCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHH-HHHHHHHHHHHHcCc
Confidence                                          1          13899999999999999988766 456799999999999


Q ss_pred             cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHh
Q 016814          282 PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVEL  356 (382)
Q Consensus       282 ~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l  356 (382)
                      ..|.+|++++.+++.+++.+-.-  ++...++|+++.++.|+.+-||..++.+|+..+..+-.+   .+...++..+.+.
T Consensus       405 ~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~  484 (885)
T KOG2023|consen  405 EEWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRR  484 (885)
T ss_pred             chhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHH
Confidence            99999999999999999987643  567889999999999999999999999999998876543   3444455555556


Q ss_pred             cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          357 TEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       357 ~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +-|.+.+|+.+|+.|++.+-+-.|+
T Consensus       485 llD~NK~VQEAAcsAfAtleE~A~~  509 (885)
T KOG2023|consen  485 LLDSNKKVQEAACSAFATLEEEAGE  509 (885)
T ss_pred             HhcccHHHHHHHHHHHHHHHHhccc
Confidence            7799999999999999988766554

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.90  E-value=1.4e-21  Score=190.90  Aligned_cols=275  Identities=22%  Similarity=0.272  Sum_probs=219.7

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  116 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il  116 (382)
                      -++.+.+.++|+++.||..+++.|+.+..        ...+|.+.+.++|+++.||.+|+.+|..+.+.....       
T Consensus       622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~-------  686 (897)
T PRK13800        622 SVAELAPYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPA-------  686 (897)
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCch-------
Confidence            34566778899999999999999998652        446889999999999999999999999886544332       


Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814          117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  196 (382)
Q Consensus       117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~  196 (382)
                      +.+...++|+++.||..++.+|+.+..  +.       .+.+...+.|+++.||..++.+|+.+..           .+.
T Consensus       687 ~~L~~~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~  746 (897)
T PRK13800        687 PALRDHLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VES  746 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHH
Confidence            456677888999999999999998752  11       1345678899999999999999988632           123


Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHH
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  276 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  276 (382)
                      +..++.|+++.||..++..|+.+...-      ..-.+.+..+++|+++.||..|+.+|+.+..    +   ..+.+.+.
T Consensus       747 l~~~l~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~----~---~~~~~~l~  813 (897)
T PRK13800        747 VAGAATDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC----P---PDDVAAAT  813 (897)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC----c---chhHHHHH
Confidence            566789999999999999998875421      1235677888999999999999999988742    1   22445678


Q ss_pred             hhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814          277 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  356 (382)
Q Consensus       277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  356 (382)
                      ..+.|++|.+|..|+.+++.+..        +..++.|...++|+++.||..++.+|+.+.   +    .....+.|...
T Consensus       814 ~aL~d~d~~VR~~Aa~aL~~l~~--------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~a  878 (897)
T PRK13800        814 AALRASAWQVRQGAARALAGAAA--------DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTA  878 (897)
T ss_pred             HHhcCCChHHHHHHHHHHHhccc--------cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHH
Confidence            88999999999999999987652        345588899999999999999999999961   1    23567788889


Q ss_pred             cCCCCccHHhHHHHHHHH
Q 016814          357 TEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       357 ~~d~~~~vr~~a~~al~~  374 (382)
                      ++|.+.+||..|.+||..
T Consensus       879 l~D~d~~Vr~~A~~aL~~  896 (897)
T PRK13800        879 LTDSDADVRAYARRALAH  896 (897)
T ss_pred             HhCCCHHHHHHHHHHHhh
Confidence            999999999999999864

>PRK09687 putative lyase; Provisional

Probab=99.90  E-value=1.2e-21  Score=164.58  Aligned_cols=254  Identities=20%  Similarity=0.191  Sum_probs=198.8

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  155 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  155 (382)
                      -.+.+.+.+.|++..||..++.+|+.+..        ..+++.+..+++|+++.+|..++.+|+.+...-.   .....+
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~---~~~~a~   92 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKR---CQDNVF   92 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc---chHHHH
Confidence            36677777889999999999999887643        3456778888889999999999999998863111   123566


Q ss_pred             HHHHHh-hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814          156 PIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  234 (382)
Q Consensus       156 ~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  234 (382)
                      |.+..+ .+|+++.||..++.+++.+.....  ......++.+...+.|++|+||..++..|+.+.        .+..++
T Consensus        93 ~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~--------~~~ai~  162 (280)
T PRK09687         93 NILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIN--------DEAAIP  162 (280)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccC--------CHHHHH
Confidence            777766 788899999999999988753211  112456666777788999999999999997653        245778


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHH
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  314 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  314 (382)
                      .+..+++|+++.||..|+.+||.+.  .+.    ....+.+...+.|+++.+|..|+.+++.+..        ...+|.+
T Consensus       163 ~L~~~L~d~~~~VR~~A~~aLg~~~--~~~----~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~--------~~av~~L  228 (280)
T PRK09687        163 LLINLLKDPNGDVRNWAAFALNSNK--YDN----PDIREAFVAMLQDKNEEIRIEAIIGLALRKD--------KRVLSVL  228 (280)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHhcCC--CCC----HHHHHHHHHHhcCCChHHHHHHHHHHHccCC--------hhHHHHH
Confidence            8889999999999999999999882  222    3477888888999999999999999988542        3688899


Q ss_pred             HhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC-CCCccHHhHHHHHHHH
Q 016814          315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQS  374 (382)
Q Consensus       315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~  374 (382)
                      ++.+.++.  +|..++.+|+.+..        ...+|.|..+++ ++|..|+..|.+++..
T Consensus       229 i~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        229 IKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            99998855  78899999998864        468899999886 8899999999988864

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.89  E-value=3e-21  Score=188.52  Aligned_cols=270  Identities=20%  Similarity=0.191  Sum_probs=215.3

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ...++|+++.||+.|++.|+.+..        +..++.+.+.+.|+++.||..++..|+.+.+..+.       .+.+..
T Consensus       627 ~~~L~D~d~~VR~~Av~~L~~~~~--------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~-------~~~L~~  691 (897)
T PRK13800        627 APYLADPDPGVRRTAVAVLTETTP--------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP-------APALRD  691 (897)
T ss_pred             HHHhcCCCHHHHHHHHHHHhhhcc--------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc-------hHHHHH
Confidence            456789999999999999988642        44677788889999999999999999988653322       345667


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  162 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  162 (382)
                      .+.|+++.||.++++.|+.+..  +.       .+.+...++|+++.||..++.+|+.+..           .+.+..++
T Consensus       692 ~L~~~d~~VR~~A~~aL~~~~~--~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~-----------~~~l~~~l  751 (897)
T PRK13800        692 HLGSPDPVVRAAALDVLRALRA--GD-------AALFAAALGDPDHRVRIEAVRALVSVDD-----------VESVAGAA  751 (897)
T ss_pred             HhcCCCHHHHHHHHHHHHhhcc--CC-------HHHHHHHhcCCCHHHHHHHHHHHhcccC-----------cHHHHHHh
Confidence            7888999999999999988642  11       1345678899999999999999998632           13456789


Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhcc
Q 016814          163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  242 (382)
Q Consensus       163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  242 (382)
                      +|+++.||..++.+|+.+...-      ...+|.+..+++|+++.||..++..|+.+..   +    +.+.+.+...+.|
T Consensus       752 ~D~~~~VR~~aa~aL~~~~~~~------~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~---~----~~~~~~l~~aL~d  818 (897)
T PRK13800        752 TDENREVRIAVAKGLATLGAGG------APAGDAVRALTGDPDPLVRAAALAALAELGC---P----PDDVAAATAALRA  818 (897)
T ss_pred             cCCCHHHHHHHHHHHHHhcccc------chhHHHHHHHhcCCCHHHHHHHHHHHHhcCC---c----chhHHHHHHHhcC
Confidence            9999999999999999885421      1236778889999999999999999988743   1    2234557788999


Q ss_pred             chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCC
Q 016814          243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV  322 (382)
Q Consensus       243 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~  322 (382)
                      ++|.||..|+.+|+.+.    .    ...++.+...++|+++.||..|+.+|+.+.   +    .....+.+...++|++
T Consensus       819 ~d~~VR~~Aa~aL~~l~----~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~---~----~~~a~~~L~~al~D~d  883 (897)
T PRK13800        819 SAWQVRQGAARALAGAA----A----DVAVPALVEALTDPHLDVRKAAVLALTRWP---G----DPAARDALTTALTDSD  883 (897)
T ss_pred             CChHHHHHHHHHHHhcc----c----cchHHHHHHHhcCCCHHHHHHHHHHHhccC---C----CHHHHHHHHHHHhCCC
Confidence            99999999999998754    2    336688889999999999999999998861   1    2345677788999999


Q ss_pred             ccHHHHHHHHHHH
Q 016814          323 PNIKFNVAKVLQS  335 (382)
Q Consensus       323 ~~vR~~a~~~l~~  335 (382)
                      +.||..|.++|..
T Consensus       884 ~~Vr~~A~~aL~~  896 (897)
T PRK13800        884 ADVRAYARRALAH  896 (897)
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999863

>PRK09687 putative lyase; Provisional

Probab=99.89  E-value=5.1e-21  Score=160.83  Aligned_cols=255  Identities=15%  Similarity=0.078  Sum_probs=204.1

Q ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 016814           36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  115 (382)
Q Consensus        36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  115 (382)
                      .-.+.+.+.+.|++..||..++..|+.+..        ..+++.+.++++|+++.+|..++.+|+.+...-..   ....
T Consensus        23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~--------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~---~~~a   91 (280)
T PRK09687         23 LNDDELFRLLDDHNSLKRISSIRVLQLRGG--------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC---QDNV   91 (280)
T ss_pred             ccHHHHHHHHhCCCHHHHHHHHHHHHhcCc--------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc---hHHH
Confidence            344556677799999999999999987652        45788889999999999999999999998542111   1246


Q ss_pred             hHhhhhh-cCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814          116 LPCVKEL-SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  194 (382)
Q Consensus       116 l~~l~~~-~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll  194 (382)
                      +|.+..+ .+|+++.||..++.+|+.++..-.  .....+++.+...+.|+++.||..++.+|+.+..        +..+
T Consensus        92 ~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~--~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~--------~~ai  161 (280)
T PRK09687         92 FNILNNLALEDKSACVRASAINATGHRCKKNP--LYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND--------EAAI  161 (280)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhccccccc--ccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC--------HHHH
Confidence            6888776 799999999999999999864221  1124566777788899999999999999987642        5677


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814          195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  274 (382)
Q Consensus       195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  274 (382)
                      +.|..+++|++|.||..++..|+.+.  .+    .+...+.+...+.|+++.||..|+..|+.+.    .    ...+|.
T Consensus       162 ~~L~~~L~d~~~~VR~~A~~aLg~~~--~~----~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~----~----~~av~~  227 (280)
T PRK09687        162 PLLINLLKDPNGDVRNWAAFALNSNK--YD----NPDIREAFVAMLQDKNEEIRIEAIIGLALRK----D----KRVLSV  227 (280)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcCC--CC----CHHHHHHHHHHhcCCChHHHHHHHHHHHccC----C----hhHHHH
Confidence            88999999999999999999999882  11    2357788889999999999999999998853    2    358899


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHH
Q 016814          275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQS  335 (382)
Q Consensus       275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~  335 (382)
                      +++.+.+++  +|..++.+++.++.        +..+|.+.++++ +++..|+..+.+++.+
T Consensus       228 Li~~L~~~~--~~~~a~~ALg~ig~--------~~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        228 LIKELKKGT--VGDLIIEAAGELGD--------KTLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHcCCc--hHHHHHHHHHhcCC--------HhHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            999999877  56678888888764        368889999886 7788899999998864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.5e-19  Score=159.20  Aligned_cols=373  Identities=19%  Similarity=0.239  Sum_probs=290.4

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHH-HHHHHHHHHHHHHHHhCCcccc---cchHHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWR-VRYMVANQLYELCEAVGPEPTR---MDLVPAY   80 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~-vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l   80 (382)
                      -++...|..+..|+++++.+|..--|...|+.+++.+..-..+..+. +|+..++.+|.+|+.+.++...   +.++..+
T Consensus        98 tL~~~ep~~~s~Aaq~va~IA~~ElP~n~wp~li~~lv~nv~~~~~~~~k~~slealGyice~i~pevl~~~sN~iLtaI  177 (859)
T KOG1241|consen   98 TLGSPEPRRPSSAAQCVAAIACIELPQNQWPELIVTLVSNVGEEQASMVKESSLEALGYICEDIDPEVLEQQSNDILTAI  177 (859)
T ss_pred             HcCCCCCCccchHHHHHHHHHHhhCchhhCHHHHHHHHHhcccccchHHHHHHHHHHHHHHccCCHHHHHHHHhHHHHHH
Confidence            35567788899999999999998777788999999888887766554 9999999999999999886432   3577777


Q ss_pred             HHhcCC--CcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhHH
Q 016814           81 VRLLRD--NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATI  151 (382)
Q Consensus        81 ~~~l~d--~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~  151 (382)
                      +.....  ++..||-+|..+|..-.+.    +..+.-.+.++..+.+.-+.++..+|.++..++..+....-.   ....
T Consensus       178 v~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~  257 (859)
T KOG1241|consen  178 VQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYME  257 (859)
T ss_pred             HhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776543  5688999999999775543    445555678899999999999999999999999998854321   1122


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh-------hch------h--------hHhhhHHHHHHHHhc-------C
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-------IGI------D--------LLSQSLLPAIVELAE-------D  203 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~-------~~~------~--------~~~~~llp~l~~~~~-------d  203 (382)
                      +.++++....+++.+++|...+++....+++.       ++.      .        .-.+.++|.+.+++.       +
T Consensus       258 ~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~  337 (859)
T KOG1241|consen  258 QALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDD  337 (859)
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCccc
Confidence            45777777778888999999999888866542       110      0        112478899888873       4


Q ss_pred             CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN  280 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~  280 (382)
                      ++|..-.++-.+|..+++..|.+... .++|.+.+-++.++|+-|++|+.++|.+...-.+.   .+..+.+|.+.....
T Consensus       338 DdWnp~kAAg~CL~l~A~~~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~  416 (859)
T KOG1241|consen  338 DDWNPAKAAGVCLMLFAQCVGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMS  416 (859)
T ss_pred             ccCcHHHHHHHHHHHHHHHhcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhc
Confidence            57999999999999999988877654 89999999999999999999999999998744332   245678899999999


Q ss_pred             CcchHHHHHHHHHHHHhccccC----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH-----------HHH
Q 016814          281 NPHYLYRMTILRAISLLAPVMG----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-----------SMV  345 (382)
Q Consensus       281 ~~~~~~r~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~-----------~~~  345 (382)
                      |+.-.+|.++.++++++++.+.    .......+++.++..++| .|.+-.++++++..++++...           ..+
T Consensus       417 D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~  495 (859)
T KOG1241|consen  417 DPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPF  495 (859)
T ss_pred             CchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchh
Confidence            9999999999999999987765    335667788888999998 588999999999999865421           123


Q ss_pred             HHhHHHHHHHhcC--C-CCccHHhHHHHHHHHHHHHh
Q 016814          346 EKTIRPCLVELTE--D-PDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       346 ~~~i~~~l~~l~~--d-~~~~vr~~a~~al~~~~~~~  379 (382)
                      ...++..|.+..+  | .+.+.|..|.+||..+....
T Consensus       496 y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~s  532 (859)
T KOG1241|consen  496 YEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNS  532 (859)
T ss_pred             HHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcC
Confidence            3455555555443  3 56789999999999887653

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=1.7e-18  Score=152.62  Aligned_cols=371  Identities=18%  Similarity=0.193  Sum_probs=279.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhh-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL   84 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l   84 (382)
                      -++.+..+|....-.-+.++.++...+ ....++..+.+-+.-++..+|.+...++..+........ ..++++.+.+++
T Consensus        65 ~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~~~~~~~~~~~~tps~~~q~~~~~~l~~~~~~~~~~~-~~~~l~~l~~ll  143 (569)
T KOG1242|consen   65 NSLHNDNLRNNVVVLEGTLAFHLQIVDPRPISIIEILLEELDTPSKSVQRAVSTCLPPLVVLSKGLS-GEYVLELLLELL  143 (569)
T ss_pred             ccchhHHHhhhhHHHHHHHHHhccccCcchhHHHHHHHHhcCCCcHHHHHHHHHHhhhHHHHhhccC-HHHHHHHHHHHh
Confidence            334466777777777777777765432 223355556666677888999999999888776554433 245788888888


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhhhcCCCchHHHH-HHHHHHHhhccccChH--hHHHhhHHHHHH
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRS-ALASVIMGMAPLLGKD--ATIEQLLPIFLS  160 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~~~d~~~~vr~-~a~~~l~~l~~~~~~~--~~~~~l~~~l~~  160 (382)
                      +.....-|..+...+..+....+.+. ....++..+.+..+|.+...+. .+.-+.......+|+.  ...-.++|.+..
T Consensus       144 ~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~  223 (569)
T KOG1242|consen  144 TSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILT  223 (569)
T ss_pred             ccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHH
Confidence            87777778888888888777655442 2346778888888998876554 4555555555666632  223455666666


Q ss_pred             hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHH
Q 016814          161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQ  238 (382)
Q Consensus       161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~  238 (382)
                      -+.|..+.||.++..+...+...++...+ +.++|.+..-+.+..|+.+..+++.++.++...+.  +...+.++|.+..
T Consensus       224 ~~~d~~~~Vr~Aa~~a~kai~~~~~~~aV-K~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lse  302 (569)
T KOG1242|consen  224 NFGDKINKVREAAVEAAKAIMRCLSAYAV-KLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSE  302 (569)
T ss_pred             HhhccchhhhHHHHHHHHHHHHhcCcchh-hHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHH
Confidence            77889999999999999999888877666 66777666666666999999999999988876654  3456889999999


Q ss_pred             HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHh--ccccChhhhhhhhHHHHHh
Q 016814          239 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGSEITCSRLLPVVIN  316 (382)
Q Consensus       239 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~~~~~~~~l~~l~~  316 (382)
                      .+.|..++||+++..++..+........ ...++|.+.+.+.|++..+.++ +..++.-  +....+ +....++|.+.+
T Consensus       303 vl~DT~~evr~a~~~~l~~~~svidN~d-I~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~-psLalmvpiL~R  379 (569)
T KOG1242|consen  303 VLWDTKPEVRKAGIETLLKFGSVIDNPD-IQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDA-PSLALMVPILKR  379 (569)
T ss_pred             HHccCCHHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecc-hhHHHHHHHHHH
Confidence            9999999999999999999999887655 3558999999999998544333 3333321  222222 467789999999


Q ss_pred             hccCCCccHHHHHHHHHHHHhhhh-hHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          317 ASKDRVPNIKFNVAKVLQSLIPIV-DQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       317 ~l~d~~~~vR~~a~~~l~~i~~~~-~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      .+.+++...+..++..++.++.-. ++.   .+...++|.+.+...|+.++||..+++|++.+.+-+|.
T Consensus       380 ~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  380 GLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             HHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999877 332   46789999999999999999999999999988887764

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.86  E-value=5.4e-18  Score=151.21  Aligned_cols=364  Identities=16%  Similarity=0.177  Sum_probs=287.1

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhh----hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPA   79 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~   79 (382)
                      +.|+.++.|+..++.+..+...++..+    .+..++.-+.-.+++++...- -+..+++.++..++.  ..+...+...
T Consensus       725 lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylpqi~st  803 (1172)
T KOG0213|consen  725 LKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLPQICST  803 (1172)
T ss_pred             hccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchHHHHHH
Confidence            468889999999999999998887633    233344444444443333332 567889999999987  5666788999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHh
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQ  153 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~  153 (382)
                      ++..++++++.||+.|++.++.++..   ++.+....++=-.+.+.+....++|--+.+.++..+.+..|-..   -...
T Consensus       804 iL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~d  883 (1172)
T KOG0213|consen  804 ILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKD  883 (1172)
T ss_pred             HHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhh
Confidence            99999999999999999999988764   45555555666677888999999999999999999988876322   2478


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  229 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~----~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  229 (382)
                      ++|.+...+++....|..+++..++.++..-    +...| -.+--.+.++++..+..+|+++...++.+++.+|+....
T Consensus       884 llPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREW-MRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPqdVL  962 (1172)
T KOG0213|consen  884 LLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREW-MRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQDVL  962 (1172)
T ss_pred             hcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHHHHH
Confidence            9999999999999999999999999998653    33333 345556777788888999999999999999999985432


Q ss_pred             -------------------------------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHH
Q 016814          230 -------------------------------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVL  276 (382)
Q Consensus       230 -------------------------------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~  276 (382)
                                                     -.++|.+++--.-++..|+...++++..+.+..|.  ..+.-.+.|.+.
T Consensus       963 atLlnnLkvqeRq~RvcTtvaIaIVaE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYiyav~Plle 1042 (1172)
T KOG0213|consen  963 ATLLNNLKVQERQNRVCTTVAIAIVAETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLE 1042 (1172)
T ss_pred             HHHHhcchHHHHHhchhhhhhhhhhhhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHH
Confidence                                           13567777666778889999999999999988876  345667899999


Q ss_pred             hhhcCcchHHHHHHHHHHHHhccc---cChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHH
Q 016814          277 EMINNPHYLYRMTILRAISLLAPV---MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL  353 (382)
Q Consensus       277 ~~l~~~~~~~r~~a~~~l~~l~~~---~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l  353 (382)
                      ..+.|.+...|+.|..++..++-+   +|.+....+++..++...-+++|.+-.+..+++..+...+|+..+.++++..|
T Consensus      1043 DAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1043 DALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGL 1122 (1172)
T ss_pred             HhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhc
Confidence            999999999999999999998644   45566778899999998899999999999999999999999877666665544


Q ss_pred             HHhcCCCCccHHhHHHHHHHHH
Q 016814          354 VELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       354 ~~l~~d~~~~vr~~a~~al~~~  375 (382)
                          -.|...||..-.+.+..+
T Consensus      1123 ----FHParkVR~~yw~vyn~m 1140 (1172)
T KOG0213|consen 1123 ----FHPARKVRKRYWTVYNSM 1140 (1172)
T ss_pred             ----cCcHHHHHHHHHHHHHhH
Confidence                357788888777666554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=99.85  E-value=4.4e-18  Score=151.77  Aligned_cols=358  Identities=20%  Similarity=0.270  Sum_probs=262.1

Q ss_pred             cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHh
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRL   83 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~   83 (382)
                      .+.++.||...+++++.+++.++-    +.++|++...+.+. +|+-|...+++..+++..+|....  ...++..+...
T Consensus       486 dn~deYVRnttarafavvasalgi----p~llpfLkavc~SkkSwqaRhTgIkivqqIail~Gcsvlphl~~lv~ii~~g  561 (1172)
T KOG0213|consen  486 DNKDEYVRNTTARAFAVVASALGI----PALLPFLKAVCGSKKSWQARHTGIKIVQQIAILSGCSVLPHLKPLVKIIEHG  561 (1172)
T ss_pred             ccccHHHHHHHHHHHHHHHHHhCc----HHHHHHHHHHhccccchhhhchhhHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence            456788898888888888888764    67999999999876 999999999999999999987653  23478888889


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHH---HH-------------------------------------------------
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPE---LA-------------------------------------------------  111 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~-------------------------------------------------  111 (382)
                      +.|.+..||..++.++..+++..++-   .+                                                 
T Consensus       562 l~De~qkVR~itAlalsalaeaa~Pygie~fDsVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil  641 (1172)
T KOG0213|consen  562 LKDEQQKVRTITALALSALAEAATPYGIEQFDSVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLIL  641 (1172)
T ss_pred             hcccchhhhhHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHH
Confidence            99999999999999999988865431   00                                                 


Q ss_pred             -----------HHhhhHhhhhhc---------------------------------------------------------
Q 016814          112 -----------IQHILPCVKELS---------------------------------------------------------  123 (382)
Q Consensus       112 -----------~~~il~~l~~~~---------------------------------------------------------  123 (382)
                                 +..++..+.+++                                                         
T Consensus       642 ~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~KvG~~~~v~R~  721 (1172)
T KOG0213|consen  642 IREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAAKVGSDPIVSRV  721 (1172)
T ss_pred             HHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHHHhCchHHHHHH
Confidence                       000111111111                                                         


Q ss_pred             ----CCCchHHHHHHHHHHHhhccccChH--------------------------------------------hHHHhhH
Q 016814          124 ----SDSSQHVRSALASVIMGMAPLLGKD--------------------------------------------ATIEQLL  155 (382)
Q Consensus       124 ----~d~~~~vr~~a~~~l~~l~~~~~~~--------------------------------------------~~~~~l~  155 (382)
                          +|+++.-|...+.++..+...+|..                                            ...+.+.
T Consensus       722 v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~  801 (1172)
T KOG0213|consen  722 VLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQIC  801 (1172)
T ss_pred             hhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHH
Confidence                4455555555555544443333210                                            0112333


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhh---hchhhH------------------------------------------h
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQV---IGIDLL------------------------------------------S  190 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~---~~~~~~------------------------------------------~  190 (382)
                      .-+...++++++.||..++..++.++..   .+.+..                                          .
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi  881 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI  881 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh
Confidence            3333456899999999988877665432   111100                                          1


Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHH---HHHHhccchhHHHHHHHHHHHHHHHHhChHHH
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  267 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~---l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  267 (382)
                      ..++|.+...+++.+.+|..+++..++.++..-+...-....+.+   +..+|+..+.++|.+|...+|.+++..|+.  
T Consensus       882 ~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~IakaIGPq--  959 (1172)
T KOG0213|consen  882 KDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKAIGPQ--  959 (1172)
T ss_pred             hhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHhcCHH--
Confidence            356777777788888899999999999988643221112233333   455677888999999999999999999985  


Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HH
Q 016814          268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MV  345 (382)
Q Consensus       268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~  345 (382)
                        +++..+++.|+....+.|....-+++..++.||+-    .++|.+..--.-++.+|+...++++..+.+.+|..  ++
T Consensus       960 --dVLatLlnnLkvqeRq~RvcTtvaIaIVaE~c~pF----tVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY 1033 (1172)
T KOG0213|consen  960 --DVLATLLNNLKVQERQNRVCTTVAIAIVAETCGPF----TVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY 1033 (1172)
T ss_pred             --HHHHHHHhcchHHHHHhchhhhhhhhhhhhhcCch----hhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH
Confidence              47778888888888888888888888889999874    57888888888889999999999999999998864  46


Q ss_pred             HHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          346 EKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      .-.+.|.|.-.+.|.|...|..|..++..++
T Consensus      1034 iyav~PlleDAlmDrD~vhRqta~~~I~Hl~ 1064 (1172)
T KOG0213|consen 1034 IYAVTPLLEDALMDRDLVHRQTAMNVIKHLA 1064 (1172)
T ss_pred             HHHhhHHHHHhhccccHHHHHHHHHHHHHHh
Confidence            6788999999999999999999999888764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.84  E-value=6.9e-18  Score=147.73  Aligned_cols=357  Identities=20%  Similarity=0.297  Sum_probs=261.5

Q ss_pred             cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCcccc--cchHHHHHHh
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPEPTR--MDLVPAYVRL   83 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~~~~--~~ll~~l~~~   83 (382)
                      .++++.||....++.+.+++.++-    +.++|++..++.+. +|+-|...+++..+++..+|.....  ..++..+..+
T Consensus       291 ~~~deYVRnvt~ra~~vva~algv----~~llpfl~a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~~l~~ci~~~  366 (975)
T COG5181         291 TSKDEYVRNVTGRAVGVVADALGV----EELLPFLEALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLGPLLKCISKL  366 (975)
T ss_pred             ccccHHHHHHHHHHHHHHHHhhCc----HHHHHHHHHHhcCccchhhhchhhHHHHHHHHHhCccHHhhhhhHHHHHHHH
Confidence            467889999999999999998874    67899999998755 9999999999999999999986542  3578888899


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHH---HHHH-------------------------hhhHhh----------------
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPE---LAIQ-------------------------HILPCV----------------  119 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~-------------------------~il~~l----------------  119 (382)
                      +.|.+..||..++.++..+++..++-   .+..                         .++|.+                
T Consensus       367 l~D~~~~vRi~tA~alS~lae~~~Pygie~fd~vl~pLw~g~~~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv  446 (975)
T COG5181         367 LKDRSRFVRIDTANALSYLAELVGPYGIEQFDEVLCPLWEGASQHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIV  446 (975)
T ss_pred             hhccceeeeehhHhHHHHHHHhcCCcchHHHHHHHHHHHHHHHhcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHH
Confidence            99999999999999999988876532   1000                         000100                


Q ss_pred             --------------------------------------------------------------------------------
Q 016814          120 --------------------------------------------------------------------------------  119 (382)
Q Consensus       120 --------------------------------------------------------------------------------  119 (382)
                                                                                                      
T Consensus       447 ~ref~spdeemkk~~l~v~~~C~~v~~~tp~~lr~~v~pefF~~fw~rr~A~dr~~~k~v~~ttvilAk~~g~~~v~~ki  526 (975)
T COG5181         447 FREFKSPDEEMKKDLLVVERICDKVGTDTPWKLRDQVSPEFFSPFWRRRSAGDRRSYKQVVLTTVILAKMGGDPRVSRKI  526 (975)
T ss_pred             HHHhCCchhhcchhHHHHHHHHhccCCCCHHHHHHhhcHHhhchHHHhhhcccccccceeehhHHHHHHHcCChHHHHHH
Confidence                                                                                            


Q ss_pred             hhhcCCCchHHHHHHHHHHHhhccccCh--------------------------------------------HhHHHhhH
Q 016814          120 KELSSDSSQHVRSALASVIMGMAPLLGK--------------------------------------------DATIEQLL  155 (382)
Q Consensus       120 ~~~~~d~~~~vr~~a~~~l~~l~~~~~~--------------------------------------------~~~~~~l~  155 (382)
                      .+..+|+...-|...+.+...+...+|.                                            +.....++
T Consensus       527 l~~~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~iv  606 (975)
T COG5181         527 LEYYSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIV  606 (975)
T ss_pred             HhhccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHH
Confidence            0111333333343333333332222210                                            00123444


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhh---chhh------------------------------------------Hh
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQVI---GIDL------------------------------------------LS  190 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~---~~~~------------------------------------------~~  190 (382)
                      .-+.++++++.+.||..++...+.+...+   |...                                          -.
T Consensus       607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi  686 (975)
T COG5181         607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPI  686 (975)
T ss_pred             HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCch
Confidence            44556678889999998887666554332   1110                                          01


Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      ..++|.+...+.+++.+|....+..++.++..-+    ...+.. +.--+...|+..+.++|.+|...+|.+.+..|++ 
T Consensus       687 ~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR-IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPq-  764 (975)
T COG5181         687 SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR-ICFELVDSLKSWNKEIRRNATETFGCISRAIGPQ-  764 (975)
T ss_pred             hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH-HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHH-
Confidence            3567777777788888898999999988876433    232322 2223456678889999999999999999999995 


Q ss_pred             HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--H
Q 016814          267 AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--M  344 (382)
Q Consensus       267 ~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~  344 (382)
                         +++..+++.++....+.|....-+++..++.+|+-    .++|.+..--..++.+|+...++++..+.+..|+.  +
T Consensus       765 ---dvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpf----sVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~d  837 (975)
T COG5181         765 ---DVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPF----SVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLD  837 (975)
T ss_pred             ---HHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCch----hhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHH
Confidence               37778888888888889999999999999999974    57888888888899999999999999999999875  4


Q ss_pred             HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          345 VEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       345 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      +.-.+.|.|.-.+.|.|+..|..|...+..++
T Consensus       838 Yvy~itPlleDAltDrD~vhRqta~nvI~Hl~  869 (975)
T COG5181         838 YVYSITPLLEDALTDRDPVHRQTAMNVIRHLV  869 (975)
T ss_pred             HHHHhhHHHHhhhcccchHHHHHHHHHHHHHh
Confidence            56789999999999999999999988887654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.83  E-value=9.3e-18  Score=157.33  Aligned_cols=362  Identities=18%  Similarity=0.250  Sum_probs=255.3

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      +=++++++.+|..|+++++.+..    .+..+.+.|.+.+++.|+++.||+.|+.++..+....++..... +++.+.++
T Consensus        86 kdl~~~n~~~~~lAL~~l~~i~~----~~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~~-~~~~l~~l  160 (526)
T PF01602_consen   86 KDLNSPNPYIRGLALRTLSNIRT----PEMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVEDE-LIPKLKQL  160 (526)
T ss_dssp             HHHCSSSHHHHHHHHHHHHHH-S----HHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHGG-HHHHHHHH
T ss_pred             HhhcCCCHHHHHHHHhhhhhhcc----cchhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHHH-HHHHHhhh
Confidence            34678999999999999999873    45567789999999999999999999999999998755543223 79999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS  160 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~  160 (382)
                      +.|+++.|+.+|+.++..+  ...++   ...+.+.+.+...+.+.+++.+..+++.+..++..-........+++.+..
T Consensus       161 L~d~~~~V~~~a~~~l~~i--~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~  238 (526)
T PF01602_consen  161 LSDKDPSVVSAALSLLSEI--KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN  238 (526)
T ss_dssp             TTHSSHHHHHHHHHHHHHH--HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH
T ss_pred             ccCCcchhHHHHHHHHHHH--ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH
Confidence            9999999999999999988  23333   234556666666678899999999999888887543322111456666666


Q ss_pred             hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh--------------
Q 016814          161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--------------  226 (382)
Q Consensus       161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--------------  226 (382)
                      ++.+.++.|.-.++..+..+...   ......+++.+..++.++++.+|..+++.+..++....+.              
T Consensus       239 ~l~s~~~~V~~e~~~~i~~l~~~---~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~~~~~~~~~l~~~  315 (526)
T PF01602_consen  239 LLQSSSPSVVYEAIRLIIKLSPS---PELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVFNQSLILFFLLYD  315 (526)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSS---HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHGTHHHHHHHHHCS
T ss_pred             HhhccccHHHHHHHHHHHHhhcc---hHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhhhhhhhhheecCC
Confidence            66666677777666666654332   1233566666777777777777777777666664332110              


Q ss_pred             -------------------hhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh--HHHH----------------
Q 016814          227 -------------------FFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP--EWAM----------------  268 (382)
Q Consensus       227 -------------------~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~--~~~~----------------  268 (382)
                                         .-...+++.+.+.+.+. +..+|..++..++.++..+.+  +++.                
T Consensus       316 ~d~~Ir~~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~~~~~~~~~  395 (526)
T PF01602_consen  316 DDPSIRKKALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLEISGDYVSN  395 (526)
T ss_dssp             SSHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHHCTGGGCHC
T ss_pred             CChhHHHHHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhhhccccccc
Confidence                               00134566666666444 667888888888888876543  1111                


Q ss_pred             -----------------hhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHH
Q 016814          269 -----------------QHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVA  330 (382)
Q Consensus       269 -----------------~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~  330 (382)
                                       ...+..+.+.+.+ ++...+..+++.+|..++..........++..+...+.+.++.+|...+
T Consensus       396 ~~~~~i~~ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~il  475 (526)
T PF01602_consen  396 EIINVIRDLLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQIL  475 (526)
T ss_dssp             HHHHHHHHHHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             hHHHHHHHHhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHH
Confidence                             2234445555554 3467889999999998887765114567777778888888888999999


Q ss_pred             HHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCccHHhHHHHHHHHH
Q 016814          331 KVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQSI  375 (382)
Q Consensus       331 ~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~~~  375 (382)
                      .++.++....+.....+.+.+.+.++..  +.+.+||..|..-+.-+
T Consensus       476 t~~~Kl~~~~~~~~~~~~i~~~~~~~~~~~s~~~evr~Ra~~y~~ll  522 (526)
T PF01602_consen  476 TALAKLFKRNPENEVQNEILQFLLSLATEDSSDPEVRDRAREYLRLL  522 (526)
T ss_dssp             HHHHHHHHHSCSTTHHHHHHHHHHCHHHHS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhCCchhhHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            9999999877654445688888888887  88999999998877654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=4.7e-18  Score=147.25  Aligned_cols=374  Identities=17%  Similarity=0.161  Sum_probs=288.5

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhh----hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc--cccch
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQD----CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--TRMDL   76 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~l   76 (382)
                      .+-++|+--+-|++|+.-+..+.+.+....    +...+-.+..++....+..-|+.+.-++...+-.+|.+.  +...+
T Consensus         6 ~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~i   85 (675)
T KOG0212|consen    6 ARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKI   85 (675)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHh
Confidence            345678888899999999999998764422    222233355566677777888899999999988888754  44568


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-C---hHhH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G---KDAT  150 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~---~~~~  150 (382)
                      +|.++.+++|++..||..|++.+.++++....+  .+.+.+...+.++..|++..||.++- .+..+.+.+ .   ....
T Consensus        86 v~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~ae-LLdRLikdIVte~~~tFs  164 (675)
T KOG0212|consen   86 VPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAE-LLDRLIKDIVTESASTFS  164 (675)
T ss_pred             hHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHH-HHHHHHHHhccccccccC
Confidence            999999999999999999999999999987665  44577888999999999999987663 344333222 1   1234


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--hh
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VG  226 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~  226 (382)
                      .+.++|.+.+.+.+.++..|...+.++..+-..-+.+.  +.+.+++.+.++++|++..||.-.-..++.+...+.  |.
T Consensus       165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~  244 (675)
T KOG0212|consen  165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS  244 (675)
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence            58899999999999999999999999988765544432  236788999999999999999888887777766553  22


Q ss_pred             h-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccC
Q 016814          227 F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMG  302 (382)
Q Consensus       227 ~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~  302 (382)
                      . -.+.+.+.+..-+..+++.++..|+..+..|++..|...  +...++..++..+.++.. ..+..+...-+.+...++
T Consensus       245 s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s  324 (675)
T KOG0212|consen  245 SMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVS  324 (675)
T ss_pred             ccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHh
Confidence            2 235688888888999999999999999999999887754  345566667777777665 467766655555544443


Q ss_pred             hh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          303 SE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       303 ~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      .+     .-...++..+.+.+.+...+.|.++++++..+....+++.+  .+.+.+.|.+.++|++.+|-..+...++.+
T Consensus       325 ~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i  404 (675)
T KOG0212|consen  325 SERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASI  404 (675)
T ss_pred             hhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHH
Confidence            32     23357888899999999999999999999999999888753  478999999999999999988888877776


Q ss_pred             HH
Q 016814          376 DH  377 (382)
Q Consensus       376 ~~  377 (382)
                      +.
T Consensus       405 ~~  406 (675)
T KOG0212|consen  405 CS  406 (675)
T ss_pred             hc
Confidence            64

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.82  E-value=1.2e-18  Score=162.74  Aligned_cols=294  Identities=21%  Similarity=0.233  Sum_probs=231.1

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC------cccccchHHHHHHh
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP------EPTRMDLVPAYVRL   83 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~   83 (382)
                      ..+-|..|++.+..++.+...+...+.++|++..+..|+...||..|+..|.++.....+      ..+..+++|.+..+
T Consensus       436 ~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l  515 (1431)
T KOG1240|consen  436 TIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHL  515 (1431)
T ss_pred             cchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhh
Confidence            456788999999999999998888999999999999999999999999999888876654      23446799999999


Q ss_pred             cCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh-----hcCCCchHHHHHHHHHHHhhcccc---ChHhHHHhh
Q 016814           84 LRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE-----LSSDSSQHVRSALASVIMGMAPLL---GKDATIEQL  154 (382)
Q Consensus        84 l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~-----~~~d~~~~vr~~a~~~l~~l~~~~---~~~~~~~~l  154 (382)
                      +.| ....||.+-+.+|+.+++....-      +..-.+     ..+|++.+          ...+..   +.+.....+
T Consensus       516 ~~d~~~~~vRiayAsnla~LA~tA~rF------le~~q~~~~~g~~n~~nse----------t~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  516 LNDSSAQIVRIAYASNLAQLAKTAYRF------LELTQELRQAGMLNDPNSE----------TAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             hccCccceehhhHHhhHHHHHHHHHHH------HHHHHHHHhcccccCcccc----------cccccccchHHHHHHHHH
Confidence            999 55779999999999998754222      111111     23444443          011111   111223444


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  234 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  234 (382)
                      -..+..++.|+.+.||.+.++++..++.+.|.+.-.+.+++++..+++|++|+.|.+..+.+..++-.+|..-..+.++|
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~seyllP  659 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEYLLP  659 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHHHHH
Confidence            56667889999999999999999999999999887788999999999999999999999999999988999888899999


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  313 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~  313 (382)
                      .+.+.+.|.++.|-..|+.++..+++.--- +....+++.....++-+|+.-+|.+++..+..+++.++.-...-++.|.
T Consensus       660 Ll~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~advyc~l~P~  739 (1431)
T KOG1240|consen  660 LLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSAADVYCKLMPL  739 (1431)
T ss_pred             HHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhhhhheEEeehh
Confidence            999999999999999999999999874211 2234456667777888999889999999999999888866555566666


Q ss_pred             HHhhcc
Q 016814          314 VINASK  319 (382)
Q Consensus       314 l~~~l~  319 (382)
                      +-.++.
T Consensus       740 irpfl~  745 (1431)
T KOG1240|consen  740 IRPFLE  745 (1431)
T ss_pred             hHHhhh
Confidence            555554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=2.8e-17  Score=145.08  Aligned_cols=348  Identities=18%  Similarity=0.159  Sum_probs=267.3

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhh-hhhhhhhhhhhccCCCHHH-HHHHHHHHHHHHHHhCC--cccccchHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDC-VAHILPVIVNFSQDKSWRV-RYMVANQLYELCEAVGP--EPTRMDLVP   78 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~~~d~~~~v-R~~a~~~l~~l~~~~~~--~~~~~~ll~   78 (382)
                      .++++...-.-|..++..+..+....+.+.. ...++.-+.+...|+.... |+.+..+.......+|.  +.+.-.++|
T Consensus       140 ~~ll~~~~~~~~~~aa~~~ag~v~g~~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp  219 (569)
T KOG1242|consen  140 LELLTSTKIAERAGAAYGLAGLVNGLGIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILP  219 (569)
T ss_pred             HHHhccccHHHHhhhhHHHHHHHcCcHHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHH
Confidence            3445555667788888888877777665433 3346667777788876655 44677777777888885  344445788


Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHH
Q 016814           79 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP  156 (382)
Q Consensus        79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~  156 (382)
                      .++..+.|..+.||.++..+...+...++...++ .++|.+..-+.+..|.-+.+++..++.++.+.+.+.  ..+.++|
T Consensus       220 ~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~lp~iiP  298 (569)
T KOG1242|consen  220 SILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-LLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCLPDLIP  298 (569)
T ss_pred             HHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-HhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHHhHhhH
Confidence            8888899999999999999999999988877554 456666665555599999999999999998887654  4589999


Q ss_pred             HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhH-HHHhhhchhhhHHHHHHH
Q 016814          157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP-LLASQLGVGFFDDKLGAL  235 (382)
Q Consensus       157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~-~l~~~~~~~~~~~~l~~~  235 (382)
                      .+.+.+.|..++||+++..++.+++..+....+ +.++|.+.+.+.|++-.+..+.-.... .++..+.+ .-...++|+
T Consensus       299 ~lsevl~DT~~evr~a~~~~l~~~~svidN~dI-~~~ip~Lld~l~dp~~~~~e~~~~L~~ttFV~~V~~-psLalmvpi  376 (569)
T KOG1242|consen  299 VLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDI-QKIIPTLLDALADPSCYTPECLDSLGATTFVAEVDA-PSLALMVPI  376 (569)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHhhccHHH-HHHHHHHHHHhcCcccchHHHHHhhcceeeeeeecc-hhHHHHHHH
Confidence            999999999999999999999999998887776 899999999999998555433322221 11122222 224578999


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHhCh----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814          236 CMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLL  311 (382)
Q Consensus       236 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l  311 (382)
                      +.+.+.+.+...+..++..++.+++....    ..|...++|.+...+.|+.+.+|..++.+++.+.+..|...+ ....
T Consensus       377 L~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~~~f-~d~~  455 (569)
T KOG1242|consen  377 LKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGEVSF-DDLI  455 (569)
T ss_pred             HHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHhhcc-cccc
Confidence            99999999999999999999999998733    236677888888888899999999999999999999998755 8888


Q ss_pred             HHHHhhccCCCc-cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH
Q 016814          312 PVVINASKDRVP-NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE  355 (382)
Q Consensus       312 ~~l~~~l~d~~~-~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  355 (382)
                      |.+...+.+... .=|..+++.+..+...++.+... .++|.+..
T Consensus       456 p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~~~-~~~~~~~a  499 (569)
T KOG1242|consen  456 PELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEKVE-DILPEILA  499 (569)
T ss_pred             cHHHHhhccchhhhhhHHHhhhHHHHHhcccchHHH-HHHHHHHH
Confidence            988888766544 46888999999998888766543 34444443

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.82  E-value=4.6e-17  Score=163.84  Aligned_cols=337  Identities=13%  Similarity=0.116  Sum_probs=263.8

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---H
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---L  110 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~  110 (382)
                      ..+.+..++...+..++..++..|..++..-.+   .......+|.+++++.+++..+|..++..++.++......   .
T Consensus       405 aik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aI  484 (2102)
T PLN03200        405 AKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAI  484 (2102)
T ss_pred             chhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344555666667789999999999998853111   1122347999999999999999999999999987633221   3


Q ss_pred             HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hH-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814          111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-AT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~  187 (382)
                      .....+|.+.+++.+++..+|..++++++.++..-.. . .. ....+|.+.+++++.++.++..++.++..+.....  
T Consensus       485 ieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d--  562 (2102)
T PLN03200        485 TAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD--  562 (2102)
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc--
Confidence            3457899999999999999999999999999863211 1 12 24678899999999999999999999999876533  


Q ss_pred             hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814          188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                         +..++.+..++..++..++..+++.++.+......+...      ..-+|.+..++.+++..+++.|+..+..++..
T Consensus       563 ---~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~  639 (2102)
T PLN03200        563 ---AATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSS  639 (2102)
T ss_pred             ---hhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence               234466778888888888899999998886644433211      24689999999999999999999999999863


Q ss_pred             hCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814          262 FGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQ  334 (382)
Q Consensus       262 ~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  334 (382)
                      -..   .......+|.++.++.+.+..++..+++++..+......+.    .....+|.+++++++++..++..++.+|.
T Consensus       640 ~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALa  719 (2102)
T PLN03200        640 RQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALA  719 (2102)
T ss_pred             ChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHH
Confidence            322   12445688999999999999999999999999986443331    23458999999999999999999999999


Q ss_pred             HHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          335 SLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       335 ~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      .+...-...  ......++.|.+++.+.++++|.+|+.|+..+...
T Consensus       720 nLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~  765 (2102)
T PLN03200        720 NLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKH  765 (2102)
T ss_pred             HHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhC
Confidence            999866433  34467789999999999999999999999888754

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=2.4e-16  Score=141.28  Aligned_cols=373  Identities=16%  Similarity=0.196  Sum_probs=279.2

Q ss_pred             cCCchHHHHHHHHHHHHHHhccCh---------h------------hhhhhhhhhhhhhc-------cCCCHHHHHHHHH
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEP---------Q------------DCVAHILPVIVNFS-------QDKSWRVRYMVAN   58 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~---------~------------~~~~~ll~~l~~~~-------~d~~~~vR~~a~~   58 (382)
                      ..+++.|...+++....++..--.         +            .-.+.++|.+.+++       .|.+|..-+++-.
T Consensus       269 ks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~  348 (859)
T KOG1241|consen  269 KSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGV  348 (859)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHH
Confidence            367789999999999877753211         1            11236788877765       2457999999999


Q ss_pred             HHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHH
Q 016814           59 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA  135 (382)
Q Consensus        59 ~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~  135 (382)
                      +|.-+++..+++.. ..++|++.+-+++++|+-|.++.-++|.+...-.+.   .+.+..+|.+..++.|++-.||.+++
T Consensus       349 CL~l~A~~~~D~Iv-~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaA  427 (859)
T KOG1241|consen  349 CLMLFAQCVGDDIV-PHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAA  427 (859)
T ss_pred             HHHHHHHHhcccch-hhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHH
Confidence            99999998888775 589999999999999999999999999987755443   45567889999999999999999999


Q ss_pred             HHHHhhccccC----hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-----------hhHhhhHHHHHHHH
Q 016814          136 SVIMGMAPLLG----KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------DLLSQSLLPAIVEL  200 (382)
Q Consensus       136 ~~l~~l~~~~~----~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-----------~~~~~~llp~l~~~  200 (382)
                      ++++.++..+.    ++...+.+++.+.+.++| .|.|-.++++++..+++....           +.+.+.++..|.+.
T Consensus       428 wtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~  506 (859)
T KOG1241|consen  428 WTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV  506 (859)
T ss_pred             HHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence            99999998775    334456677778888888 889999999999888754321           11223333333333


Q ss_pred             hc--C-CCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhc-------c--chhHHHHHHHHHHHHHHHHh
Q 016814          201 AE--D-RHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQ-------D--KVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       201 ~~--d-~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~-------d--~~~~vr~~a~~~l~~~~~~~  262 (382)
                      ..  | .....|.++.+.|..+.+......+.      ..++.-+.+.++       |  .-.++....+..|+.+...+
T Consensus       507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~  586 (859)
T KOG1241|consen  507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKV  586 (859)
T ss_pred             ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence            22  2 34679999999999999866554332      111221222221       1  22356666778888888888


Q ss_pred             ChH--HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHH
Q 016814          263 GPE--WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       263 ~~~--~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i  336 (382)
                      +.+  ...++++..++..++. ++..+.+.|..+++.++..+|..  .|.+.+.|++...+ +-..+.|-.+++..++.+
T Consensus       587 ~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl  666 (859)
T KOG1241|consen  587 GSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDL  666 (859)
T ss_pred             cccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence            773  3567788888888887 44678889999999999999976  47889999999988 555677999999999999


Q ss_pred             hhhhhHHH--HHHhHHHHHHHhcCCC--CccHHhHHHHHHHHHHHHhcc
Q 016814          337 IPIVDQSM--VEKTIRPCLVELTEDP--DVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       337 ~~~~~~~~--~~~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +..++.+.  +...++..|.+.++.+  +.+|+-....+++.|+-..|.
T Consensus       667 ~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~  715 (859)
T KOG1241|consen  667 ARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGA  715 (859)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHH
Confidence            99888763  5677888888877664  567888899999999888775

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.80  E-value=1.3e-16  Score=160.60  Aligned_cols=369  Identities=13%  Similarity=0.124  Sum_probs=281.9

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLV   77 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll   77 (382)
                      .|++..+..++..++..+..++..-..   .......+|.+.+++.+.+..+|+.++..++.++..-..   .......+
T Consensus       411 ~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaI  490 (2102)
T PLN03200        411 GLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGI  490 (2102)
T ss_pred             hhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence            455556789999999999999875322   112333678889999988999999999999999852221   11224689


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-H-HH-HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-E-LA-IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~-~~-~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      |.+.+++.+++..+|+.|++++++++..-.. . .+ ....+|.+.+++++.++.++..++.+|..+...-..     ..
T Consensus       491 P~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-----~~  565 (2102)
T PLN03200        491 PPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-----AT  565 (2102)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-----hH
Confidence            9999999999999999999999999863211 1 22 236889999999999999999999999999764332     23


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH------hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---h
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---V  225 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~  225 (382)
                      ++.+..++..+++.++..++..++.+......+..      ....+|.+.+++++++..++..++..+..++..-.   .
T Consensus       566 I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~  645 (2102)
T PLN03200        566 ISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCE  645 (2102)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHH
Confidence            35567778777889999999988888665444322      13478999999999999999999999999875322   1


Q ss_pred             hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      .......+|.+..++.+.+.++++.++.+|+.+......+.    .....+|.+.+++++++..+++.++.++..+...-
T Consensus       646 avv~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~  725 (2102)
T PLN03200        646 SLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP  725 (2102)
T ss_pred             HHHHcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc
Confidence            23345678889999999999999999999999996333221    23458899999999999999999999999998654


Q ss_pred             Chh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH-H-----HHhHHHHHHHhcCCCCccHHhH--HHHH
Q 016814          302 GSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM-V-----EKTIRPCLVELTEDPDVDVRFF--ATQA  371 (382)
Q Consensus       302 ~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~-~-----~~~i~~~l~~l~~d~~~~vr~~--a~~a  371 (382)
                      ...  ......+|.+..++++.++.+|..|+.+|..+......++ +     ....+..|..+++..|.+.-..  |..+
T Consensus       726 e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~  805 (2102)
T PLN03200        726 EVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEA  805 (2102)
T ss_pred             hHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHH
Confidence            322  3446779999999999999999999999999998776543 2     2455666667776666665444  7777


Q ss_pred             HHHHHH
Q 016814          372 IQSIDH  377 (382)
Q Consensus       372 l~~~~~  377 (382)
                      +..++.
T Consensus       806 l~~l~~  811 (2102)
T PLN03200        806 LALLAR  811 (2102)
T ss_pred             HHHHHh
Confidence            777765

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.79  E-value=4.1e-18  Score=159.18  Aligned_cols=305  Identities=19%  Similarity=0.213  Sum_probs=221.6

Q ss_pred             hhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------H
Q 016814           37 ILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------E  109 (382)
Q Consensus        37 ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~------~  109 (382)
                      +++++..++.. +....|..|++.|..++.....+.....++|.++.++.|+...||..|+.+|..+.....+      .
T Consensus       423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~dan  502 (1431)
T KOG1240|consen  423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDAN  502 (1431)
T ss_pred             eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccch
Confidence            44444444432 3445677788888888887777776677888888888888888888888887777654421      2


Q ss_pred             HHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH-----hhcCCChHHHHHHHHhhHHhhhh
Q 016814          110 LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      .+.+.++|.+..++.| ....||.+.+.+|+.++....      .++..-..     +.++++.+-       ...-...
T Consensus       503 iF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~------rFle~~q~~~~~g~~n~~nset-------~~~~~~~  569 (1431)
T KOG1240|consen  503 IFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY------RFLELTQELRQAGMLNDPNSET-------APEQNYN  569 (1431)
T ss_pred             hhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH------HHHHHHHHHHhcccccCccccc-------ccccccc
Confidence            4566778888888888 566788888888888775322      11111111     234433320       0000000


Q ss_pred             hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          184 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       184 ~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      -+...+.+.+-..+..++.|+.+-||+++++.+..++..+|.+.-.+.+++++..+|+|.+|..|.+-.+.+.-++-..|
T Consensus       570 ~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG  649 (1431)
T KOG1240|consen  570 TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG  649 (1431)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEe
Confidence            01112224445556778899999999999999999999999998889999999999999999999999999988888888


Q ss_pred             hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          264 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       264 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      .....+.++|.+.+.+.|+...|-..|+.++..|++.-- .+....+++..+..++..+|.-+|..++..+..+...++.
T Consensus       650 ~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~  729 (1431)
T KOG1240|consen  650 WRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA  729 (1431)
T ss_pred             eeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence            877778899999999999999999999999999986422 3346677888888899999999999999999999988876


Q ss_pred             HHHHHhHHHHHH
Q 016814          343 SMVEKTIRPCLV  354 (382)
Q Consensus       343 ~~~~~~i~~~l~  354 (382)
                      .+..-.+.|.+.
T Consensus       730 advyc~l~P~ir  741 (1431)
T KOG1240|consen  730 ADVYCKLMPLIR  741 (1431)
T ss_pred             hhheEEeehhhH
Confidence            543333333333

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.7e-16  Score=137.65  Aligned_cols=364  Identities=16%  Similarity=0.198  Sum_probs=266.9

Q ss_pred             hHHHHHHHHHHHHHHhccChhh--hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCC
Q 016814           11 DSVRLLAVEGCAALGKLLEPQD--CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRD   86 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d   86 (382)
                      ..-|+.++..+.+.+-.++.+.  ....++|-+..++.|++.++|..||+.+.++++....+..  .+.+...+.++..|
T Consensus        57 ~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaD  136 (675)
T KOG0212|consen   57 ANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCKLSAD  136 (675)
T ss_pred             cccccchHHHHHHHHHHhccccHHHHHHhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHHHhcC
Confidence            3344444444444444444432  4566778888899999999999999999999998776543  45688888889999


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHH
Q 016814           87 NEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLS  160 (382)
Q Consensus        87 ~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~  160 (382)
                      ++..||.+ ++.+..+.+.+..+    ...+.++|.+.+-+.+.++.+|...++++..+-..-+-+.  ..+.+++.+.+
T Consensus       137 sd~~V~~~-aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~  215 (675)
T KOG0212|consen  137 SDQNVRGG-AELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFN  215 (675)
T ss_pred             CccccccH-HHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHH
Confidence            99999876 46777776654332    3356899999999999999999999999999876655544  34889999999


Q ss_pred             hhcCCChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHH
Q 016814          161 LLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGAL  235 (382)
Q Consensus       161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~  235 (382)
                      +++|++++||..+-..++.+...+..+.-   ...+++.+..-+.++++.++..++.++..+.+..|.....  ..++..
T Consensus       216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~  295 (675)
T KOG0212|consen  216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA  295 (675)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence            99999999999888888887665532211   1456777777778899999999999999999877766533  456666


Q ss_pred             HHHHhccchh-HHHHHHHHHHHHHHHHhChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhh
Q 016814          236 CMQWLQDKVY-SIRDAAANNLKRLAEEFGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITC  307 (382)
Q Consensus       236 l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~  307 (382)
                      +..++.|.+. .++..+...-+.+.+.++.+..     ...++..+...+.+.....|.+++.++..+-...+.+  .+.
T Consensus       296 iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~  375 (675)
T KOG0212|consen  296 ILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHN  375 (675)
T ss_pred             cccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhc
Confidence            6677777666 5777777666666665544321     2357888889999999999999999999998888876  466


Q ss_pred             hhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ..+++.+++-+.|++..|-..++..+..++..-....+ .+++..|.++......-++..+.-.+.++.
T Consensus       376 ~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~-~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC  443 (675)
T KOG0212|consen  376 DSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL-RKFLLSLLEMFKEDTKLLEVRGNLIIRQLC  443 (675)
T ss_pred             cHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH-HHHHHHHHHHHhhhhHHHHhhhhHHHHHHH
Confidence            78999999999999999999999999999875443222 333444444433333333334444444433

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.78  E-value=3.3e-15  Score=136.92  Aligned_cols=381  Identities=17%  Similarity=0.214  Sum_probs=259.9

Q ss_pred             CcchhccCCchHHHHHHHHHHHHHHhccChhhh---------------------------------------------hh
Q 016814            1 MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDC---------------------------------------------VA   35 (382)
Q Consensus         1 ~~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~---------------------------------------------~~   35 (382)
                      |+-+++.|.+++|...|+++++-++...+.+..                                             -+
T Consensus        51 ~lLklL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~  130 (1233)
T KOG1824|consen   51 MLLKLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCK  130 (1233)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHH
Confidence            466889999999999999999987766543211                                             12


Q ss_pred             hhhhhhhhhc--cCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 016814           36 HILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  111 (382)
Q Consensus        36 ~ll~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~  111 (382)
                      .+.|.+.+.+  +.+...++..++..++.+...+|.-  ++...++..+...+..+-..||+.++-+++.++..++.+.+
T Consensus       131 ~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly  210 (1233)
T KOG1824|consen  131 RITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLY  210 (1233)
T ss_pred             HHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            2333333333  2344458888888888888888762  23445777777777888889999999999999999998877


Q ss_pred             HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhh---cCCChHHHHHHHHhhHHhhhhhch
Q 016814          112 IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL---KDEFPDVRLNIISKLDQVNQVIGI  186 (382)
Q Consensus       112 ~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l---~d~~~~vr~~~~~~l~~~~~~~~~  186 (382)
                      ...+-..+..+-+......-+..+++++.++...|...  ..+.+.|.+.+++   +..+.+.|+.++++++.+....+.
T Consensus       211 ~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~  290 (1233)
T KOG1824|consen  211 VELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPK  290 (1233)
T ss_pred             HHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChh
Confidence            65555555556666666666778899999988777543  3478889999988   677899999999999999877654


Q ss_pred             hhH--hhhHHHHHHHHh----------------------------------cCCCchHHHHHHHHhHHHHhhhch--hhh
Q 016814          187 DLL--SQSLLPAIVELA----------------------------------EDRHWRVRLAIIEYIPLLASQLGV--GFF  228 (382)
Q Consensus       187 ~~~--~~~llp~l~~~~----------------------------------~d~~~~vr~~~~~~l~~l~~~~~~--~~~  228 (382)
                      +-.  .+.++..+.+.+                                  .|-+|.||+++++++..+.....+  ..+
T Consensus       291 ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~  370 (1233)
T KOG1824|consen  291 EILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDF  370 (1233)
T ss_pred             hhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            321  123333333322                                  123699999999999877643321  123


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--------------------------------------------
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--------------------------------------------  264 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------------------------------------------  264 (382)
                      .+.+-|.+...+++.+..|+...+++.-.+....+.                                            
T Consensus       371 ~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~k  450 (1233)
T KOG1824|consen  371 YQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVK  450 (1233)
T ss_pred             HHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhcccc
Confidence            345556666666666666665555555444433210                                            


Q ss_pred             --------------------HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhh---hhhhHHHHHhhcc
Q 016814          265 --------------------EWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASK  319 (382)
Q Consensus       265 --------------------~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~---~~~~l~~l~~~l~  319 (382)
                                          ......++|.+...+.|.+  ...+..++.++.......+++.|   ...+.|.+.....
T Consensus       451 t~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~  530 (1233)
T KOG1824|consen  451 TRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVG  530 (1233)
T ss_pred             chhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhc
Confidence                                0011235555666666654  56777777777777767777644   4566788888889


Q ss_pred             CCCccHHHHHHHHHHHHhhhhhH---------HHHHHhHHHHHHH-h-cCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          320 DRVPNIKFNVAKVLQSLIPIVDQ---------SMVEKTIRPCLVE-L-TEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       320 d~~~~vR~~a~~~l~~i~~~~~~---------~~~~~~i~~~l~~-l-~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      |+-+.+-..|+.....+...+.+         ..+...+.....+ + .+|.|.+||..|+.+++.+...+|+
T Consensus       531 d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD  603 (1233)
T KOG1824|consen  531 DPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGD  603 (1233)
T ss_pred             CchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhh
Confidence            99998888888888887765532         2233333333333 3 5789999999999999999988875

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=99.77  E-value=2.8e-15  Score=137.41  Aligned_cols=373  Identities=15%  Similarity=0.165  Sum_probs=257.8

Q ss_pred             cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhc
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLL   84 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l   84 (382)
                      +..-..||+.|+-+++.++...+.+.+...+-.++..+.+..+...-...+++|+.++...|.+..  ...+.|.+.+++
T Consensus       184 ~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~  263 (1233)
T KOG1824|consen  184 QSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYC  263 (1233)
T ss_pred             cChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHh
Confidence            445678999999999999999888766666666677777777777777889999999998887543  346899999988


Q ss_pred             ---CCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhhhc----------------------------------CC
Q 016814           85 ---RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELS----------------------------------SD  125 (382)
Q Consensus        85 ---~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~~----------------------------------~d  125 (382)
                         +..+.+.|+.++++++.|...++.+.  +...++..+.+.+                                  +|
T Consensus       264 ~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD  343 (1233)
T KOG1824|consen  264 NKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDED  343 (1233)
T ss_pred             cccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccc
Confidence               66678999999999999999998872  2222333332222                                  24


Q ss_pred             CchHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--------h--------
Q 016814          126 SSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------D--------  187 (382)
Q Consensus       126 ~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--------~--------  187 (382)
                      -+|.||+++++++..+...-..  ..+.+.+-|.+...+++..++|+...+.++-.+....+.        |        
T Consensus       344 ~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~  423 (1233)
T KOG1824|consen  344 MSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTP  423 (1233)
T ss_pred             hhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCc
Confidence            4699999999999987642211  113355667777777777888887777776665443221        0        


Q ss_pred             ---h-H---hhhHHHHHHHHhcCCCchHHH-------------------------------------------HHHHHhH
Q 016814          188 ---L-L---SQSLLPAIVELAEDRHWRVRL-------------------------------------------AIIEYIP  217 (382)
Q Consensus       188 ---~-~---~~~llp~l~~~~~d~~~~vr~-------------------------------------------~~~~~l~  217 (382)
                         . +   ...++..+..-+++++.+.|.                                           .++..+.
T Consensus       424 s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~  503 (1233)
T KOG1824|consen  424 SDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLY  503 (1233)
T ss_pred             cchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHH
Confidence               0 0   011222222223333333333                                           3333444


Q ss_pred             HHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---------HHHHhhhHHHHHhhhc--Ccc
Q 016814          218 LLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------EWAMQHITPQVLEMIN--NPH  283 (382)
Q Consensus       218 ~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------~~~~~~l~~~l~~~l~--~~~  283 (382)
                      ......+++.|.   +.+.|.+.....|+-+.+-..|+.....+++...+         ..+...++...++.++  |.+
T Consensus       504 ~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~D  583 (1233)
T KOG1824|consen  504 SALISHPPEVFHPHLSALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSD  583 (1233)
T ss_pred             HHHhcCChhhcccchhhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhccccc
Confidence            333444444444   45677777788899999999999998888886532         3345566666667665  566


Q ss_pred             hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh---hhHHHHHHhHHHHHHHhcC
Q 016814          284 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI---VDQSMVEKTIRPCLVELTE  358 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~---~~~~~~~~~i~~~l~~l~~  358 (382)
                      ..||+.|+.+++++.-.+|..  ......+|.+...++.  ...|..|++++..|+..   +.-......++|.+...+.
T Consensus       584 qeVkeraIscmgq~i~~fgD~l~~eL~~~L~il~eRl~n--EiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flr  661 (1233)
T KOG1824|consen  584 QEVKERAISCMGQIIANFGDFLGNELPRTLPILLERLGN--EITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLR  661 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc--hhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHH
Confidence            899999999999998888832  3455667777777754  67999999999999753   2223345778888888777


Q ss_pred             CCCccHHhHHHHHHHHHHHHhcc
Q 016814          359 DPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       359 d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ......|.....++..+...+|.
T Consensus       662 K~~r~lr~~~l~a~~~L~~~~~~  684 (1233)
T KOG1824|consen  662 KNQRALRLATLTALDKLVKNYSD  684 (1233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc
Confidence            77778899999999888887764

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.77  E-value=6.5e-16  Score=144.91  Aligned_cols=352  Identities=17%  Similarity=0.136  Sum_probs=246.1

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      ++..|..++.-+..+.. .|.+  .+...+-+.+++..++...|+.+.-.+..+...-++  ...-+.+.+.+-+.++++
T Consensus        19 ~~~~~~~~l~kli~~~~-~G~~--~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~--~~~l~~n~l~kdl~~~n~   93 (526)
T PF01602_consen   19 DISKKKEALKKLIYLMM-LGYD--ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPE--LLILIINSLQKDLNSPNP   93 (526)
T ss_dssp             HHHHHHHHHHHHHHHHH-TT-----GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHH--HHHHHHHHHHHHHCSSSH
T ss_pred             CHHHHHHHHHHHHHHHH-cCCC--CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchh--HHHHHHHHHHHhhcCCCH
Confidence            66666666655554433 2221  246667777788889999999888887776642111  122367777788889999


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHH
Q 016814           90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDV  169 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  169 (382)
                      .+|..|+.+++.+.   .+ ...+.+.|.+.+++.|+++.||..|+.++..+....+ +.....+++.+.+++.|+++.|
T Consensus        94 ~~~~lAL~~l~~i~---~~-~~~~~l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p-~~~~~~~~~~l~~lL~d~~~~V  168 (526)
T PF01602_consen   94 YIRGLALRTLSNIR---TP-EMAEPLIPDVIKLLSDPSPYVRKKAALALLKIYRKDP-DLVEDELIPKLKQLLSDKDPSV  168 (526)
T ss_dssp             HHHHHHHHHHHHH----SH-HHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCH-CCHHGGHHHHHHHHTTHSSHHH
T ss_pred             HHHHHHHhhhhhhc---cc-chhhHHHHHHHHHhcCCchHHHHHHHHHHHHHhccCH-HHHHHHHHHHHhhhccCCcchh
Confidence            99999999999875   23 3446788999999999999999999999999886533 2222227899999999999999


Q ss_pred             HHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHH
Q 016814          170 RLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI  247 (382)
Q Consensus       170 r~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  247 (382)
                      +.+++..+..+ +.-+..  .+...+.+.+.+++.+.++..+..+++.+..++..-........+++.+...+.+.++.|
T Consensus       169 ~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~~l~s~~~~V  247 (526)
T PF01602_consen  169 VSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLNLLQSSSPSV  247 (526)
T ss_dssp             HHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHHHhhccccHH
Confidence            99999988888 211111  233556666666668888888888888888765422222111467888888888889999


Q ss_pred             HHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHH
Q 016814          248 RDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF  327 (382)
Q Consensus       248 r~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~  327 (382)
                      ...++.++..+..   .......+++.+..++.++++.+|..++..+..++...... .. .....+..+..+++..+|.
T Consensus       248 ~~e~~~~i~~l~~---~~~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~-v~-~~~~~~~~l~~~~d~~Ir~  322 (526)
T PF01602_consen  248 VYEAIRLIIKLSP---SPELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPA-VF-NQSLILFFLLYDDDPSIRK  322 (526)
T ss_dssp             HHHHHHHHHHHSS---SHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHH-HG-THHHHHHHHHCSSSHHHHH
T ss_pred             HHHHHHHHHHhhc---chHHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchh-hh-hhhhhhheecCCCChhHHH
Confidence            8888888775543   22255678888999999888999999999999988766332 22 3333344445577888999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCC-CccHHhHHHHHHHHHHHHhcc
Q 016814          328 NVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP-DVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       328 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~~~~~~  381 (382)
                      .+++.+..+...-    ....+++.|.+.+.+. +.++|..+.++++.++....+
T Consensus       323 ~~l~lL~~l~~~~----n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~  373 (526)
T PF01602_consen  323 KALDLLYKLANES----NVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP  373 (526)
T ss_dssp             HHHHHHHHH--HH----HHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred             HHHHHHhhccccc----chhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence            9999988887533    3355777777776444 777999999999988876543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=9e-16  Score=134.91  Aligned_cols=364  Identities=14%  Similarity=0.144  Sum_probs=267.2

Q ss_pred             CchHHHHHHHHHHHHHHhccC--h--hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHH
Q 016814            9 DQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAY   80 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l   80 (382)
                      ++++.+..+...+..+.....  +  +.....++|.+.+++. +.++.++..++-+|.+++....+   -......+|.|
T Consensus        78 ~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~f  157 (514)
T KOG0166|consen   78 DDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIF  157 (514)
T ss_pred             CCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHH
Confidence            345557777777777666433  2  3345568888888775 77899999999999999974433   22234589999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCch-HHHHHHHHHHHhhccccChH---hHHHh
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLLGKD---ATIEQ  153 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~~~~---~~~~~  153 (382)
                      +.++.+++..||+.|.++|++++...+   .......+++.+..++..... ...+.+.+++..++..-.+.   .....
T Consensus       158 i~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~  237 (514)
T KOG0166|consen  158 IQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAP  237 (514)
T ss_pred             HHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHH
Confidence            999999999999999999999976432   334445677777777766655 67788899999999765321   24578


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hh
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GF  227 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~  227 (382)
                      ++|.+..++.+.+++|...+++++..+.......   .+...+.|.+..++...+..++..+++.++.++..-+.   ..
T Consensus       238 iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~v  317 (514)
T KOG0166|consen  238 ILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVV  317 (514)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHH
Confidence            9999999999999999999999999887643321   11235789999999999999999999999997653321   22


Q ss_pred             hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH-----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          228 FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE-----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       228 ~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~-----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      .....+|.+..++. .+...+|+.|+..++.+..  |..     .+...++|.++..+......+|..|+++++.++...
T Consensus       318 i~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItA--G~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g  395 (514)
T KOG0166|consen  318 INSGALPVLSNLLSSSPKESIKKEACWTISNITA--GNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSG  395 (514)
T ss_pred             HhcChHHHHHHHhccCcchhHHHHHHHHHHHhhc--CCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccC
Confidence            33567899999888 6677799999999999986  442     244579999999999999999999999999987665


Q ss_pred             Chhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------HHH-----HHhHHHHHHHhcCCCCccHHh
Q 016814          302 GSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SMV-----EKTIRPCLVELTEDPDVDVRF  366 (382)
Q Consensus       302 ~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------~~~-----~~~i~~~l~~l~~d~~~~vr~  366 (382)
                      .++.    +..-+++.+..+|.-....+-..++.++..+...-..      ..+     ...-+..+..+....+.++..
T Consensus       396 ~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~hen~~Iy~  475 (514)
T KOG0166|consen  396 TPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQSHENEEIYK  475 (514)
T ss_pred             CHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhccccHHHHH
Confidence            5542    3345788888888666666667777777777653221      111     124455555666666667777


Q ss_pred             HHHHHHHH
Q 016814          367 FATQAIQS  374 (382)
Q Consensus       367 ~a~~al~~  374 (382)
                      .|.+.+..
T Consensus       476 ~A~~II~~  483 (514)
T KOG0166|consen  476 KAYKIIDT  483 (514)
T ss_pred             HHHHHHHH
Confidence            66666554

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.74  E-value=3.5e-14  Score=123.87  Aligned_cols=374  Identities=13%  Similarity=0.110  Sum_probs=272.3

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC-HHHHHHHHHHHHHHHHHhCCccccc---chHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGPEPTRM---DLVPA   79 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~   79 (382)
                      +-+..+.|..-..|++.++.+++.--+...|+.++..+.....|+. ..++..++..++.+++...++...+   .++-.
T Consensus       101 ~aL~s~epr~~~~Aaql~aaIA~~Elp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~Pe~li~~sN~il~a  180 (858)
T COG5215         101 RALKSPEPRFCTMAAQLLAAIARMELPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAPEDLIQMSNVILFA  180 (858)
T ss_pred             HHhcCCccHHHHHHHHHHHHHHHhhCccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCHHHHHHHhhHHHHH
Confidence            3456778888899999999999987777788998888777776655 4678899999999998887744322   23333


Q ss_pred             HH-Hhc-CCCcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC---hHhH
Q 016814           80 YV-RLL-RDNEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDAT  150 (382)
Q Consensus        80 l~-~~l-~d~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~  150 (382)
                      +. ... +.++..||.+++.+|..-+..    +..+...+.++....+..+.++.++..++..++..+....-   +...
T Consensus       181 iv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ym  260 (858)
T COG5215         181 IVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYM  260 (858)
T ss_pred             HHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33 333 346788999999999873322    33344567888999999999999999999999998874322   1112


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-ch----h--------------hHhhhHHHHHHHHhc-------CC
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-GI----D--------------LLSQSLLPAIVELAE-------DR  204 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~-~~----~--------------~~~~~llp~l~~~~~-------d~  204 (382)
                      .+.+..+....+++++++|...+++....+++.- ..    .              .-...++|.+++++.       ++
T Consensus       261 E~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~D  340 (858)
T COG5215         261 ENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGD  340 (858)
T ss_pred             HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            2445555666788999999999998887765431 00    0              012458899888873       46


Q ss_pred             CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcC
Q 016814          205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINN  281 (382)
Q Consensus       205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~  281 (382)
                      +|.+..++..++..+++..|.....+ ++..+.+.+..++|.-|++++.++|.+...-..   ..+..+.+|.+.....|
T Consensus       341 dWn~smaA~sCLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D  419 (858)
T COG5215         341 DWNPSMAASSCLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSD  419 (858)
T ss_pred             ccchhhhHHHHHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhccc
Confidence            79999999999999999888877665 888888999999999999999999999863222   23556788888888889


Q ss_pred             cchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---------HHHHh
Q 016814          282 PHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKT  348 (382)
Q Consensus       282 ~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~  348 (382)
                      +.-.++.+++++++.++......    ....-.....+..+.| +|.+..++.+....+..++.+.         .+...
T Consensus       420 ~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~a  498 (858)
T COG5215         420 SCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLA  498 (858)
T ss_pred             ceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHH
Confidence            98889999999999998765432    1122223334455666 5778888888888888877643         12234


Q ss_pred             HHHHHHHh--cCCCCccHHhHHHHHHHHHHHHh
Q 016814          349 IRPCLVEL--TEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       349 i~~~l~~l--~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                      ++..|.+-  ..+.+.+.|..+..+++.+...-
T Consensus       499 i~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~  531 (858)
T COG5215         499 ILNALVKGTELALNESNLRVSLFSALGTLILIC  531 (858)
T ss_pred             HHHHHHHHHHhhccchhHHHHHHHHHHHHHhhc
Confidence            44445442  34778889999999999887643

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=99.73  E-value=2.2e-15  Score=132.30  Aligned_cols=342  Identities=14%  Similarity=0.161  Sum_probs=211.4

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChh----hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh--CCcccccchHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV--GPEPTRMDLVPA   79 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~--~~~~~~~~ll~~   79 (382)
                      .+|+....|+.++.....+...++..    ..+..++.-+....++++..+. ....+++.+.-.+  ....+...++..
T Consensus       530 ~~De~ep~r~m~a~~vsri~~~lg~~~~dErleerl~d~il~Afqeq~~t~~-~il~~f~tv~vsl~~r~kp~l~~ivSt  608 (975)
T COG5181         530 YSDEPEPYRKMNAGLVSRIFSRLGRLGFDERLEERLYDSILNAFQEQDTTVG-LILPCFSTVLVSLEFRGKPHLSMIVST  608 (975)
T ss_pred             ccCCcchhhhhhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhcccccc-EEEecccceeeehhhccCcchHHHHHH
Confidence            56777788888888887777766642    2333344444444443332221 1222333332222  223444568888


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHh---hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHh
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRI---LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQ  153 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~---~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~  153 (382)
                      ++..++++.+.||..|++..+.++..   |+......++=-.+.+-+....++|--..++++..+....+-.   .-...
T Consensus       609 iL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~  688 (975)
T COG5181         609 ILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISG  688 (975)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhh
Confidence            89999999999999999998888764   5555555556566778888889999999999999887766532   23468


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhh----chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVI----GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  229 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~----~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  229 (382)
                      ++|-+...+++....|..+.+..++.++..-    |...| -.+--.+...+++.+..+|+++.+.++-++..+|+....
T Consensus       689 ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEW-MRIcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGPqdvL  767 (975)
T COG5181         689 ILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREW-MRICFELVDSLKSWNKEIRRNATETFGCISRAIGPQDVL  767 (975)
T ss_pred             ccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHH-HHHHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCHHHHH
Confidence            8899999999999999999999999987653    33334 345555667778888899999999999999999986322


Q ss_pred             H-------------------------------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHH
Q 016814          230 D-------------------------------KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVL  276 (382)
Q Consensus       230 ~-------------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~  276 (382)
                      .                               .++|.++.-...++..|+...++++..+.+..|..  .+.-.+.|.+-
T Consensus       768 ~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFeyig~~s~dYvy~itPlle  847 (975)
T COG5181         768 DILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEYIGQASLDYVYSITPLLE  847 (975)
T ss_pred             HHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            1                               12333333333344445555555555554444432  23334555555


Q ss_pred             hhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhH
Q 016814          277 EMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTI  349 (382)
Q Consensus       277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i  349 (382)
                      ..+.|.+...|++|...+..++-++..   +...-+++..++...-+++|.+-.+..+.+..+...+|...+-.++
T Consensus       848 DAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~~~~lg~g~~m~Yv  923 (975)
T COG5181         848 DALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESFATVLGSGAMMKYV  923 (975)
T ss_pred             hhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence            555555555555555555555544321   2334445555555555555555555555555555555544433333

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.72  E-value=4.6e-15  Score=130.49  Aligned_cols=339  Identities=17%  Similarity=0.155  Sum_probs=253.9

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHH---
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE---  109 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~---  109 (382)
                      .+...+.+...+...+..+...+..+...-...    .....++|.+++++. +.++.++..|+++|.+++..-...   
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            455555556666666777777777766544331    223468999999996 667999999999999998744322   


Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHhhhhhc
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQVIG  185 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~~~~~~  185 (382)
                      .+....+|.|..++.+++..|++.++++++.++..-..  + ......++.+..++..... ...+.+.+++..++..-.
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            44567899999999999999999999999999854331  1 2234555666666665554 677788899999887652


Q ss_pred             h-h--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          186 I-D--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       186 ~-~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      + .  .....++|.+..++.+.+..|...++..++++...-.+.   .....++|.+..+|..++..++..|+.++|.++
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIv  307 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIV  307 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhcccee
Confidence            2 1  223789999999999999999999999999998643321   233467899999999999999999999999987


Q ss_pred             HHhChHH-----HHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHH
Q 016814          260 EEFGPEW-----AMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVA  330 (382)
Q Consensus       260 ~~~~~~~-----~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~  330 (382)
                      .  |.+.     .....+|.+..++. ++...+|..|+++++.++-.-...   .+...++|.++..+......+|..|+
T Consensus       308 t--G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAa  385 (514)
T KOG0166|consen  308 T--GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAA  385 (514)
T ss_pred             e--ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHH
Confidence            5  4332     34567888988888 556779999999999987532221   34568899999999999999999999


Q ss_pred             HHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          331 KVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       331 ~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      .+++.+...-.++.    ....+++.+..++.=+|.++-..+..++..+-.+
T Consensus       386 waIsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  386 WAISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKV  437 (514)
T ss_pred             HHHHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHH
Confidence            99999876555442    2356788888888767777777777777766543

>PTZ00429 beta-adaptin; Provisional

Probab=99.72  E-value=1.3e-13  Score=129.71  Aligned_cols=356  Identities=14%  Similarity=0.101  Sum_probs=216.7

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ++=++|++|.+|-.|++.++.+-.    ....+.+.+.+.+++.|+++.||+.|+-++.++-...++......+++.+.+
T Consensus       111 ~KDl~d~Np~IRaLALRtLs~Ir~----~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~  186 (746)
T PTZ00429        111 LQDTTNSSPVVRALAVRTMMCIRV----SSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVE  186 (746)
T ss_pred             HHHcCCCCHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHH
Confidence            344778999999999998877543    4556778888899999999999999999999987655543333457888999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      ++.|+++.|...|+.+|..+....+.. ......+..+...+.+.+++-+...++.+......-.  .....++..+...
T Consensus       187 LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~--~e~~~il~~l~~~  264 (746)
T PTZ00429        187 LLNDNNPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDK--ESAETLLTRVLPR  264 (746)
T ss_pred             HhcCCCccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCc--HHHHHHHHHHHHH
Confidence            999999999999999999987654322 1223344555566667778888888887765443211  1235677888888


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhHh---hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHH--------
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD--------  230 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~---~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~--------  230 (382)
                      ++..++.|.-++++.+..+.....++...   ..+.+.+..+ .+.++.+|..+++.+..+.... +..+.+        
T Consensus       265 Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~-P~lf~~~~~~Ff~~  342 (746)
T PTZ00429        265 MSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIF-PNLLRTNLDSFYVR  342 (746)
T ss_pred             hcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHC-HHHHHHHHHhhhcc
Confidence            88889999999999988876554333221   2233444455 4566788999998887776543 222222        


Q ss_pred             -------------------------HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchH
Q 016814          231 -------------------------KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL  285 (382)
Q Consensus       231 -------------------------~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~  285 (382)
                                               .++.-+.....|.+.+++..++.+++.++..+.  ...+.++..+.+++.++...
T Consensus       343 ~~Dp~yIK~~KLeIL~~Lane~Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~~--~~a~~cV~~Ll~ll~~~~~~  420 (746)
T PTZ00429        343 YSDPPFVKLEKLRLLLKLVTPSVAPEILKELAEYASGVDMVFVVEVVRAIASLAIKVD--SVAPDCANLLLQIVDRRPEL  420 (746)
T ss_pred             cCCcHHHHHHHHHHHHHHcCcccHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHhcCCchh
Confidence                                     122223333344455555555555555554432  12344555555555443322


Q ss_pred             HHHHHHHHHHHhccccChhhhhhhhHHHHHhhc---cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814          286 YRMTILRAISLLAPVMGSEITCSRLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       286 ~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  362 (382)
                      +. .++..+..+.+.+...    .+++.+...+   .=..+..|.+.++.+|+.+..+..   ...++..+..-..+.+.
T Consensus       421 v~-e~i~vik~IlrkyP~~----~il~~L~~~~~~~~i~e~~AKaaiiWILGEy~~~I~~---a~~~L~~~i~~f~~E~~  492 (746)
T PTZ00429        421 LP-QVVTAAKDIVRKYPEL----LMLDTLVTDYGADEVVEEEAKVSLLWMLGEYCDFIEN---GKDIIQRFIDTIMEHEQ  492 (746)
T ss_pred             HH-HHHHHHHHHHHHCccH----HHHHHHHHhhcccccccHHHHHHHHHHHHhhHhhHhh---HHHHHHHHHhhhccCCH
Confidence            22 2344444444443332    1233333221   112345666666666666554432   23344333333344566


Q ss_pred             cHHhHHHHHHHHHH
Q 016814          363 DVRFFATQAIQSID  376 (382)
Q Consensus       363 ~vr~~a~~al~~~~  376 (382)
                      .||.....+...+.
T Consensus       493 ~VqlqlLta~vKlf  506 (746)
T PTZ00429        493 RVQLAILSAAVKMF  506 (746)
T ss_pred             HHHHHHHHHHHHHH
Confidence            67766655555443

>PTZ00429 beta-adaptin; Provisional

Probab=99.72  E-value=6.1e-14  Score=131.90  Aligned_cols=355  Identities=14%  Similarity=0.085  Sum_probs=212.7

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      +.++..+...|+.|++-+...... |. + ...+.+-+.+++..++..+|+.+.-.+..+++.-++..  --.++.+.+-
T Consensus        39 ~~L~s~~~~~kk~alKkvIa~mt~-G~-D-vS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--lLaINtl~KD  113 (746)
T PTZ00429         39 NDLNGTDSYRKKAAVKRIIANMTM-GR-D-VSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--LLAVNTFLQD  113 (746)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHC-CC-C-chHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--HHHHHHHHHH
Confidence            344555666677777655544331 22 2 34566667778888899999999999888765322211  2358888889


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  163 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  163 (382)
                      ++|+++.+|..|+++++.+.    ...+.+.+++.+.+.+.|+++.||..|+.++..+....+.-.....+++.+.+++.
T Consensus       114 l~d~Np~IRaLALRtLs~Ir----~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pelv~~~~~~~~L~~LL~  189 (746)
T PTZ00429        114 TTNSSPVVRALAVRTMMCIR----VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQLFYQQDFKKDLVELLN  189 (746)
T ss_pred             cCCCCHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcccccccchHHHHHHHhc
Confidence            99999999999999888752    24455678899999999999999999999999987654422223467788899999


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814          164 DEFPDVRLNIISKLDQVNQVIGIDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  241 (382)
Q Consensus       164 d~~~~vr~~~~~~l~~~~~~~~~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  241 (382)
                      |.++.|..+++.++..+...-+ +.+  ....+..+...+.+-+..-+..+++.+.....  ..+.....++..+...++
T Consensus       190 D~dp~Vv~nAl~aL~eI~~~~~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P--~~~~e~~~il~~l~~~Lq  266 (746)
T PTZ00429        190 DNNPVVASNAAAIVCEVNDYGS-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRP--SDKESAETLLTRVLPRMS  266 (746)
T ss_pred             CCCccHHHHHHHHHHHHHHhCc-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC--CCcHHHHHHHHHHHHHhc
Confidence            9999999999999998865432 212  12222223333333333333444444422110  001112345555666666


Q ss_pred             cchhHHHHHHHHHHHHHHHHhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          242 DKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      ..+..|.-+|++++-.+.....++..   ...+.+.++.+ .++...+|..++..+..+..... ..+.. -+..+....
T Consensus       267 ~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P-~lf~~-~~~~Ff~~~  343 (746)
T PTZ00429        267 HQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP-NLLRT-NLDSFYVRY  343 (746)
T ss_pred             CCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH-HHHHH-HHHhhhccc
Confidence            66777777777766666543322211   11122223333 33445666666666665554332 22222 233444445


Q ss_pred             cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       319 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +|+.. +|...++.|..++..-    ....++..|.+...|.+.+++..+.++++.++..
T Consensus       344 ~Dp~y-IK~~KLeIL~~Lane~----Nv~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k  398 (746)
T PTZ00429        344 SDPPF-VKLEKLRLLLKLVTPS----VAPEILKELAEYASGVDMVFVVEVVRAIASLAIK  398 (746)
T ss_pred             CCcHH-HHHHHHHHHHHHcCcc----cHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh
Confidence            55543 6666666666654322    2244555555666666666666666666666543

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=2.7e-13  Score=130.29  Aligned_cols=369  Identities=12%  Similarity=0.122  Sum_probs=239.4

Q ss_pred             chHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814           10 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR   85 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~   85 (382)
                      ...-|+.|+-.++.+++..+.  +.....++|.+..+--|++..|+.++....+.+...-..  +.+.++++.-++..+.
T Consensus       970 ~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt 1049 (1702)
T KOG0915|consen  970 TWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLT 1049 (1702)
T ss_pred             hhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhcc
Confidence            445688899999999987654  334566889899998999999999999999988753222  4455678888888889


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHH---HHhhccccC-------hHhHHH
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASV---IMGMAPLLG-------KDATIE  152 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~---l~~l~~~~~-------~~~~~~  152 (382)
                      +..|+||++++-++..+...-+.+.+.+   +++..+....+|-...||.++-++   ++.++-.+.       .....+
T Consensus      1050 ~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~ 1129 (1702)
T KOG0915|consen 1050 SKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALD 1129 (1702)
T ss_pred             chhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHH
Confidence            9999999999999999998877665543   445555566788888899887554   444432222       233567


Q ss_pred             hhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCch-------------------HHH
Q 016814          153 QLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWR-------------------VRL  210 (382)
Q Consensus       153 ~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~-------------------vr~  210 (382)
                      .++|++.. .+....++||+.++..+..+.+..|..-  ....++|.+......-.+.                   .|.
T Consensus      1130 ~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~ 1209 (1702)
T KOG0915|consen 1130 IILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRA 1209 (1702)
T ss_pred             HHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHH
Confidence            78888874 3446789999999999999988877531  2245666665553322111                   222


Q ss_pred             HHHH------HhHHHHhhhchhhhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcC
Q 016814          211 AIIE------YIPLLASQLGVGFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINN  281 (382)
Q Consensus       211 ~~~~------~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~  281 (382)
                      .+++      .+..+...++... ..++.|.+.++++.. .-..|-+++..+..++..+|.|  .+...++..++..++|
T Consensus      1210 s~aksspmmeTi~~ci~~iD~~v-Leelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~d 1288 (1702)
T KOG0915|consen 1210 SAAKSSPMMETINKCINYIDISV-LEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKD 1288 (1702)
T ss_pred             hhhcCCcHHHHHHHHHHhhhHHH-HHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhcccc
Confidence            2222      2233333333333 346777777766543 4556777777777777777764  3666777777777778


Q ss_pred             cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--------------------
Q 016814          282 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--------------------  341 (382)
Q Consensus       282 ~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--------------------  341 (382)
                      .+..+|.+.+.+++.++..-.++.+...+-..+...+.+..+. +..++.++..|+.+..                    
T Consensus      1289 RNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~-~siscatis~Ian~s~e~Lkn~asaILPLiFLa~~e 1367 (1702)
T KOG0915|consen 1289 RNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESL-KSISCATISNIANYSQEMLKNYASAILPLIFLAMHE 1367 (1702)
T ss_pred             ccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCc-cchhHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHhH
Confidence            7777888888888887776666544333333333344333321 1222222222222110                    


Q ss_pred             ----------------------H-H-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          342 ----------------------Q-S-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       342 ----------------------~-~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                                            . + .....+.+......++..|.+|..+++++..++.-+.
T Consensus      1368 e~Ka~q~Lw~dvW~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~s 1430 (1702)
T KOG0915|consen 1368 EEKANQELWNDVWAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLS 1430 (1702)
T ss_pred             HHHHHHHHHHHHHHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHccccc
Confidence                                  0 0 1224455556666788889999999999998876543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=99.62  E-value=7.6e-12  Score=109.57  Aligned_cols=375  Identities=15%  Similarity=0.110  Sum_probs=262.2

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccCh-------------------hhhhhhhhhhhhhhc-------cCCCHHHHHHHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFS-------QDKSWRVRYMVAN   58 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~-------~d~~~~vR~~a~~   58 (382)
                      ..+..+++|...|++....+...--.                   ......++|-+.+++       .+.+|.+-.++..
T Consensus       271 ~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~s  350 (858)
T COG5215         271 FMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASS  350 (858)
T ss_pred             HhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHH
Confidence            45678889999999999777753211                   011234666666655       2458999999999


Q ss_pred             HHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHH
Q 016814           59 QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALA  135 (382)
Q Consensus        59 ~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~  135 (382)
                      +|.-.++..|+....+ ++.++.+-+.+++|.-|+++..++|.+...-...   .+.+..+|.+.....|+.-.|++.++
T Consensus       351 CLqlfaq~~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttA  429 (858)
T COG5215         351 CLQLFAQLKGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTA  429 (858)
T ss_pred             HHHHHHHHhhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHH
Confidence            9999898887766543 8888889999999999999999999986543332   45677889999999999999999999


Q ss_pred             HHHHhhccccChHhHH-HhhHHHHHH---hhcCCChHHHHHHHHhhHHhhhhhchhh-----H----hhhHHHHHHHH--
Q 016814          136 SVIMGMAPLLGKDATI-EQLLPIFLS---LLKDEFPDVRLNIISKLDQVNQVIGIDL-----L----SQSLLPAIVEL--  200 (382)
Q Consensus       136 ~~l~~l~~~~~~~~~~-~~l~~~l~~---~l~d~~~~vr~~~~~~l~~~~~~~~~~~-----~----~~~llp~l~~~--  200 (382)
                      ++++.++.++...... .++.+....   .+.| +|.+-.++.+.+..+...+.+-.     +    ...++..+...  
T Consensus       430 wc~g~iad~va~~i~p~~Hl~~~vsa~liGl~D-~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~  508 (858)
T COG5215         430 WCFGAIADHVAMIISPCGHLVLEVSASLIGLMD-CPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTE  508 (858)
T ss_pred             HHHHHHHHHHHHhcCccccccHHHHHHHhhhhc-cchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHH
Confidence            9999998766532211 223333332   3455 66777777777666665544321     1    12233333222  


Q ss_pred             hcCCCchHHHHHHHHhHHHHhhhchhhh------H-------HHHHHHHHHHhc--c--chhHHHHHHHHHHHHHHHHhC
Q 016814          201 AEDRHWRVRLAIIEYIPLLASQLGVGFF------D-------DKLGALCMQWLQ--D--KVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       201 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~------~-------~~l~~~l~~~l~--d--~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      ..+.....|.++...++.+....+....      .       ++-+....+.+.  |  ...++...-+..+..++...+
T Consensus       509 ~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~  588 (858)
T COG5215         509 LALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRR  588 (858)
T ss_pred             hhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            1355567889999999988765443211      1       111222222222  2  135677778888888888887


Q ss_pred             h--HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          264 P--EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       264 ~--~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .  +...++++..++..+...+ ..+-.-...+++.++..++..  .+.++++|++.+.++.....|-.+++..++.++.
T Consensus       589 ~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlan  668 (858)
T COG5215         589 RDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLAN  668 (858)
T ss_pred             CCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHH
Confidence            7  5566778888888887664 445556778888888777754  5788999999999988888899999999999999


Q ss_pred             hhhHHH--HHHhHHHHHHHhcCC--CCccHHhHHHHHHHHHHHHhcc
Q 016814          339 IVDQSM--VEKTIRPCLVELTED--PDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       339 ~~~~~~--~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      .++.+.  +...++..|.++++.  .+.+++-.....++.++..+|.
T Consensus       669 tl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga  715 (858)
T COG5215         669 TLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGA  715 (858)
T ss_pred             HhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhh
Confidence            998763  557777778787655  4667888889999999888774

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.2e-12  Score=125.91  Aligned_cols=338  Identities=17%  Similarity=0.171  Sum_probs=243.1

Q ss_pred             HHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCcHHHHHHHH
Q 016814           20 GCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRIAAA   96 (382)
Q Consensus        20 ~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~~~VR~~a~   96 (382)
                      -+..+|..++.    +.++--++++.+ +..|.-|+.|+-.++.+++..+.  +.+...++|.+.++=.||+..|+.+..
T Consensus       944 ELc~LASdl~q----PdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~ 1019 (1702)
T KOG0915|consen  944 ELCNLASDLGQ----PDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQAGEKLEPYLKKLIPRLYRYQYDPDKKVQDAMT 1019 (1702)
T ss_pred             HHHHHHhhcCC----hHHHHHHHHHhhhhchhhcccchhhchHHHHHHHHHhhhhHHHHhhHHHhhhccCCcHHHHHHHH
Confidence            34455554443    456666777775 56899999999999999988776  455667999999999999999999998


Q ss_pred             HHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh---hcCCChHHHH
Q 016814           97 GKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL---LKDEFPDVRL  171 (382)
Q Consensus        97 ~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~---l~d~~~~vr~  171 (382)
                      .....+...  ...+.+.++|+.-+..-+.+..|.||+++|-++..+.+.-+.+...+.+..+...+   +.|-.+.||+
T Consensus      1020 sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~ 1099 (1702)
T KOG0915|consen 1020 SIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVRE 1099 (1702)
T ss_pred             HHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888887543  12335567788888888899999999999999999998766555555554444443   4565688888


Q ss_pred             HHHHhhHHhhhhh---c-------hhhHhhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHH
Q 016814          172 NIISKLDQVNQVI---G-------IDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQ  238 (382)
Q Consensus       172 ~~~~~l~~~~~~~---~-------~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~  238 (382)
                      ++-.+...+.+..   +       ...+...++|.+..- .-++-..||+..+..+..++++.|...  +.+.++|.+.+
T Consensus      1100 aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1100 AADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFPKLIPLLLN 1179 (1702)
T ss_pred             HHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhhHHHHHHHH
Confidence            7655544443321   1       123336677777541 235667899999999999999888643  34677888777


Q ss_pred             HhccchhHH-------------------HHHHH------HHHHHHHHHhChHHHHhhhHHHHHhhhcCcc-hHHHHHHHH
Q 016814          239 WLQDKVYSI-------------------RDAAA------NNLKRLAEEFGPEWAMQHITPQVLEMINNPH-YLYRMTILR  292 (382)
Q Consensus       239 ~l~d~~~~v-------------------r~~a~------~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~  292 (382)
                      ....-++.|                   |..++      +.++..+.+.. ....++++|.+.+..+.+- -..|-.++.
T Consensus      1180 ~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD-~~vLeelip~l~el~R~sVgl~Tkvg~A~ 1258 (1702)
T KOG0915|consen 1180 AYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYID-ISVLEELIPRLTELVRGSVGLGTKVGCAS 1258 (1702)
T ss_pred             HccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhccCCCCcchhHHH
Confidence            665443332                   22221      12222222221 2345779999999887653 678889999


Q ss_pred             HHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814          293 AISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       293 ~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  362 (382)
                      ++..++..+|.+  ++..+++-.++.+++|.++.+|...+.+.+.++..-.++.....+-..+..++.+.+.
T Consensus      1259 fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es 1330 (1702)
T KOG0915|consen 1259 FISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDES 1330 (1702)
T ss_pred             HHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCC
Confidence            999999988876  7889999999999999999999999999999998888877766666666666655444

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=6.4e-14  Score=115.96  Aligned_cols=337  Identities=17%  Similarity=0.153  Sum_probs=239.8

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhh---hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc--ccccchH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAH---ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLV   77 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~---ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll   77 (382)
                      +.++++.++.+...|.+.+|.++...+.......   +-+++.+...|.. .+|..++.++.+++..-...  .....-+
T Consensus        91 l~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~v-evqcnaVgCitnLaT~d~nk~kiA~sGaL  169 (550)
T KOG4224|consen   91 LALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGV-EVQCNAVGCITNLATFDSNKVKIARSGAL  169 (550)
T ss_pred             HHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCc-EEEeeehhhhhhhhccccchhhhhhccch
Confidence            3467788889999999999988887665443333   3346777766664 78999999999999752211  1123345


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-hH---hHH
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-KD---ATI  151 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~~---~~~  151 (382)
                      ..+.++.+.++..||..+..+|.++...-.  ...+...-+|.+.++++..++.||.-++.+++.++-.-. ..   ...
T Consensus       170 ~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqae  249 (550)
T KOG4224|consen  170 EPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAE  249 (550)
T ss_pred             hhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcc
Confidence            566668888889999999999988754322  223334678999999999999999999999998874221 11   123


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh-
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-  228 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-  228 (382)
                      +.++|.+.+++.|+++.|+..+..+++.+...-.  .+.....-+|.+.++++++.-..-.+-..++..++-+-+.+.. 
T Consensus       250 p~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI  329 (550)
T KOG4224|consen  250 PKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLI  329 (550)
T ss_pred             cchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccce
Confidence            6799999999999999999999999988765322  1222234589999999888766556666666655543332221 


Q ss_pred             -HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc--ccc
Q 016814          229 -DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVM  301 (382)
Q Consensus       229 -~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~  301 (382)
                       ...++..+..+|.- .+.+++-.|...+..++.....   ..+....+|.+.+++.|....+|.....++..++  +..
T Consensus       330 ~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~  409 (550)
T KOG4224|consen  330 ADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDND  409 (550)
T ss_pred             ecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcccc
Confidence             23355556666654 4566999999999998864322   2345568999999999988766666555565554  444


Q ss_pred             ChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          302 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       302 ~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      .......-++|.++..+.+.+.+||..++.+|..+.+..
T Consensus       410 k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v  448 (550)
T KOG4224|consen  410 KEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDV  448 (550)
T ss_pred             HHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhh
Confidence            444455678999999999999999999999999998754

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.59  E-value=9.4e-12  Score=114.33  Aligned_cols=366  Identities=17%  Similarity=0.183  Sum_probs=247.7

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD   86 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d   86 (382)
                      +...=..+.++|..+.....+....+...+.+...+.++++.||..+++.++.++..-..   -.....+++.+..++.|
T Consensus        51 ~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~  130 (503)
T PF10508_consen   51 NREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD  130 (503)
T ss_pred             ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence            333335777888888888877777888999999999999999999999999887743322   11235689999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh
Q 016814           87 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL  161 (382)
Q Consensus        87 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~  161 (382)
                      ++..|.+.|+++|..+++.-..-  .+.+..++.+..++..++..+|..+...+..++..-....   ....+++.+.+.
T Consensus       131 ~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~e  210 (503)
T PF10508_consen  131 PDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKE  210 (503)
T ss_pred             CcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHH
Confidence            99999999999999998743221  1223347888888888788899889888888876543221   224588888888


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhh-chhhH-hhhHHHHHHHHhcCCC--c---hHH-HHHHHHhHHHHhhhchhhh---HH
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVI-GIDLL-SQSLLPAIVELAEDRH--W---RVR-LAIIEYIPLLASQLGVGFF---DD  230 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~-~~~~~-~~~llp~l~~~~~d~~--~---~vr-~~~~~~l~~l~~~~~~~~~---~~  230 (382)
                      +++++.-++.+++..+..++..- |.+.+ ...+++.+..++.+..  +   .+. ...+..++.++.. ++..+   .+
T Consensus       211 L~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~-~~~~v~~~~p  289 (503)
T PF10508_consen  211 LDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARV-SPQEVLELYP  289 (503)
T ss_pred             hcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhc-ChHHHHHHHH
Confidence            99989999999999999998731 11211 1346666766654322  2   111 2333555555543 33222   25


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH-H-------HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-A-------MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-~-------~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  302 (382)
                      .++..+...+.+.+...+..|+.++|.++....... .       ...++..+.....+....+|..++.++..+.....
T Consensus       290 ~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  290 AFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGT  369 (503)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCC
Confidence            677777788889999999999999999986543322 1       23355555566667777899999999999853322


Q ss_pred             h---h--------hhh---hhhHH-HHHhhccCCCccHHHHHHHHHHHHhhhh-hHHHHH--HhHHHHHHHhcCCCCccH
Q 016814          303 S---E--------ITC---SRLLP-VVINASKDRVPNIKFNVAKVLQSLIPIV-DQSMVE--KTIRPCLVELTEDPDVDV  364 (382)
Q Consensus       303 ~---~--------~~~---~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~~~-~~~~~~--~~i~~~l~~l~~d~~~~v  364 (382)
                      .   +        +|.   ..-.. .+...++.|-+++|.++...+..++.+- |...+.  ..++..+..-..+++++.
T Consensus       370 ~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~  449 (503)
T PF10508_consen  370 DRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEG  449 (503)
T ss_pred             CCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHH
Confidence            2   1        110   11112 6778888888999999999999998653 222211  234444433344556666


Q ss_pred             HhHHHHHHHHHH
Q 016814          365 RFFATQAIQSID  376 (382)
Q Consensus       365 r~~a~~al~~~~  376 (382)
                      +.+=...+..+.
T Consensus       450 ke~K~~ii~~l~  461 (503)
T PF10508_consen  450 KEAKYDIIKALA  461 (503)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.54  E-value=3e-11  Score=111.05  Aligned_cols=338  Identities=17%  Similarity=0.197  Sum_probs=236.4

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHh
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQH  114 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~  114 (382)
                      .+.+..++++.+...-..+++.|..+............+.+.+...+.++++.||..+++.++.++..-...   ...+.
T Consensus        40 ~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~  119 (503)
T PF10508_consen   40 EPVLFDCLNTSNREQVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNE  119 (503)
T ss_pred             HHHHHHHHhhcChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCcc
Confidence            344677777777666788888999888877666556778999999999999999999999998876543221   22357


Q ss_pred             hhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH---
Q 016814          115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---  189 (382)
Q Consensus       115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~---  189 (382)
                      +++.+..++.|++..|...+++++..++..-.. + .+.+.+.+.+.+++..+++.+|..+...+..++.. +++.+   
T Consensus       120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~-S~~~~~~~  198 (503)
T PF10508_consen  120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASH-SPEAAEAV  198 (503)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhc-CHHHHHHH
Confidence            889999999999999999999999999865331 1 12244478888888887889999988888887643 22221   


Q ss_pred             -hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhhhH-HHHHHHHHHHhccchhHHHHH------HHHHHHHHHH
Q 016814          190 -SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKLGALCMQWLQDKVYSIRDA------AANNLKRLAE  260 (382)
Q Consensus       190 -~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~d~~~~vr~~------a~~~l~~~~~  260 (382)
                       ...+++.+...+++++.-++.++++.+..++..- |-+++. ..+++.+...+.+....-|..      .++..+.++.
T Consensus       199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~  278 (503)
T PF10508_consen  199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLAR  278 (503)
T ss_pred             HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHh
Confidence             1347888888889999999999999999998732 222222 235666666665432221222      2345555554


Q ss_pred             HhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh--------hhhhhHHHHHhhccCCCccHHHHH
Q 016814          261 EFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--------TCSRLLPVVINASKDRVPNIKFNV  329 (382)
Q Consensus       261 ~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~--------~~~~~l~~l~~~l~d~~~~vR~~a  329 (382)
                      . ++..+   ...++..+.+.+.+.+...+.+|+.+++.++.......        ....++..+.........++|..+
T Consensus       279 ~-~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~  357 (503)
T PF10508_consen  279 V-SPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRA  357 (503)
T ss_pred             c-ChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHH
Confidence            3 33222   23455566677778889999999999999986543321        224456666666777777899999


Q ss_pred             HHHHHHHhhhhhH---H--------HHH---HhHHH-HHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          330 AKVLQSLIPIVDQ---S--------MVE---KTIRP-CLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       330 ~~~l~~i~~~~~~---~--------~~~---~~i~~-~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +.+++.+......   +        +|.   ..-.. .+..+++.|-+++|.++.+.+..++.
T Consensus       358 l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~  420 (503)
T PF10508_consen  358 LHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAA  420 (503)
T ss_pred             HHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhc
Confidence            9999999643322   1        111   11111 56677888999999999999988764

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.53  E-value=7.9e-11  Score=106.90  Aligned_cols=168  Identities=21%  Similarity=0.244  Sum_probs=129.9

Q ss_pred             chhccCCchHHHHHHHHHHHH-HHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAA-LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~-l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      .+|++...+..+..|+.-|.. +++...    .+.+.|.+.+....++.+||+.+--.|-+.++.-++....  -+..+.
T Consensus        41 ~~lLdSnkd~~KleAmKRIia~iA~G~d----vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLALL--SIntfQ  114 (968)
T KOG1060|consen   41 KQLLDSNKDSLKLEAMKRIIALIAKGKD----VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLALL--SINTFQ  114 (968)
T ss_pred             HHHHhccccHHHHHHHHHHHHHHhcCCc----HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCceee--eHHHHH
Confidence            456666666666666665554 444332    5778888889899999999999999999988865554433  288899


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      +.+.|+++.+|..|+..+..+=    -..+...++-.+.++..|+++.||..|+.++..+-. ++++. .+++...+..+
T Consensus       115 k~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~-k~qL~e~I~~L  188 (968)
T KOG1060|consen  115 KALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQ-KDQLEEVIKKL  188 (968)
T ss_pred             hhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhh-HHHHHHHHHHH
Confidence            9999999999999999988751    222334566677889999999999999999998875 34433 34899999999


Q ss_pred             hcCCChHHHHHHHHhhHHhhh
Q 016814          162 LKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~  182 (382)
                      +.|.++-|-..++.++..++.
T Consensus       189 LaD~splVvgsAv~AF~evCP  209 (968)
T KOG1060|consen  189 LADRSPLVVGSAVMAFEEVCP  209 (968)
T ss_pred             hcCCCCcchhHHHHHHHHhch
Confidence            999999999999888887764

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.47  E-value=3.5e-11  Score=106.01  Aligned_cols=253  Identities=22%  Similarity=0.251  Sum_probs=161.7

Q ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhh
Q 016814           36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHI  115 (382)
Q Consensus        36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~i  115 (382)
                      ...+.+.+.+.|+++.+|..+...++.+..        ...+|.+.+.+.|.++.||..+..+|+.+..        ...
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            345556667777788888888877665542        4567778888888888888888887766532        133


Q ss_pred             hHhhhhhcC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC------------hHHHHHHHHhhHHhhh
Q 016814          116 LPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF------------PDVRLNIISKLDQVNQ  182 (382)
Q Consensus       116 l~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~------------~~vr~~~~~~l~~~~~  182 (382)
                      +|.+.++++ |.++.||..++.+++.+...-.        ++.+.+.++|+.            ..+|..++..++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~a--------~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDERA--------LDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCchhh--------hHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            455555555 7888888888888888776322        222222333322            2577777777776643


Q ss_pred             hhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814          183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       183 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  262 (382)
                              +...+.+...+.+....||..++..++.+....      ..+.+.+...+.|+++.+|..++..++....  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    455666777777777788888888887776432      2456667777888888888888887766542  


Q ss_pred             ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          263 GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       263 ~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                            ....+.+...+.+.++.++..+.......        ....-.+.+...+.|....+|..+..+++.+......
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~  308 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGAL--------DLAEAALPLLLLLIDEANAVRLEAALALGQIGQEKAV  308 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhccc--------CchhhHHHHHHHhhcchhhHHHHHHHHHHhhcccchH
Confidence                  22445556666677776666666555411        1122233445566677777777777777777765543

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=99.47  E-value=4.9e-11  Score=105.08  Aligned_cols=248  Identities=23%  Similarity=0.273  Sum_probs=167.7

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      ...+.+.+.+.|+++.+|..+...++.+..        ...+|.+.+++.|.++.||..++.+++.+..        +.-
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~--------~~av~~l~~~l~d~~~~vr~~a~~aLg~~~~--------~~a  106 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS--------EEAVPLLRELLSDEDPRVRDAAADALGELGD--------PEA  106 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch--------HHHHHHHHHHhcCCCHHHHHHHHHHHHccCC--------hhH
Confidence            356777778888888888888888666543        3567888888888888999999887777752        234


Q ss_pred             HHHHHHhhc-CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCC------------chHHHHHHHHhHHHHh
Q 016814          155 LPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH------------WRVRLAIIEYIPLLAS  221 (382)
Q Consensus       155 ~~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~------------~~vr~~~~~~l~~l~~  221 (382)
                      .|.+.+++. |++..||..++.+++.+...        ..++.+...++++.            |.+|..+...++.+..
T Consensus       107 ~~~li~~l~~d~~~~vR~~aa~aL~~~~~~--------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~~l~~~~~  178 (335)
T COG1413         107 VPPLVELLENDENEGVRAAAARALGKLGDE--------RALDPLLEALQDEDSGSAAAALDAALLDVRAAAAEALGELGD  178 (335)
T ss_pred             HHHHHHHHHcCCcHhHHHHHHHHHHhcCch--------hhhHHHHHHhccchhhhhhhhccchHHHHHHHHHHHHHHcCC
Confidence            455555555 78889999999998888753        22333334444433            4677788777776643


Q ss_pred             hhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          222 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       222 ~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                              +...+.+...+.|++..||..|+.+++.+....      ..+.+.+...+.++++.+|..++..++.+..  
T Consensus       179 --------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~--  242 (335)
T COG1413         179 --------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN------VEAADLLVKALSDESLEVRKAALLALGEIGD--  242 (335)
T ss_pred             --------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCc--
Confidence                    345666777888888889999988888877542      2356677778888889999888888877652  


Q ss_pred             ChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          302 GSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       302 ~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                            ....+.+...+.+....++..+...++.+..        ....+.+.....|..+.+|..+..+++.+.
T Consensus       243 ------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~  303 (335)
T COG1413         243 ------EEAVDALAKALEDEDVILALLAAAALGALDL--------AEAALPLLLLLIDEANAVRLEAALALGQIG  303 (335)
T ss_pred             ------chhHHHHHHHHhccchHHHHHHHHHhcccCc--------hhhHHHHHHHhhcchhhHHHHHHHHHHhhc
Confidence                  2344556677777777777777666652211        122233444455556666666665555543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.46  E-value=1.9e-11  Score=100.72  Aligned_cols=340  Identities=13%  Similarity=0.110  Sum_probs=227.2

Q ss_pred             hhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh---hC
Q 016814           35 AHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI---LN  107 (382)
Q Consensus        35 ~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~---~~  107 (382)
                      ..+.|.+.+++ +.+..-..-.|+=+|.+++.......   .....+|.|++++.+++..||+.+.++|++++..   +.
T Consensus       113 aGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~R  192 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCR  192 (526)
T ss_pred             ccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHH
Confidence            34677777777 34444566778888898886554422   1235799999999999999999999999998643   22


Q ss_pred             HHHHHHhhhHhhhhhcCCCch--HHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814          108 PELAIQHILPCVKELSSDSSQ--HVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       108 ~~~~~~~il~~l~~~~~d~~~--~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~  182 (382)
                      ........+..+..++.+...  .+-+.+.+.|..++..-.+   .....+.+|.+.+++...+++|-..+++++.-+..
T Consensus       193 D~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsD  272 (526)
T COG5064         193 DYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSD  272 (526)
T ss_pred             HHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhcc
Confidence            222233455666666655544  4556777888888864432   23457899999999999999999999999988765


Q ss_pred             hhchhhH----hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--h-hhHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814          183 VIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--G-FFDDKLGALCMQWLQDKVYSIRDAAANNL  255 (382)
Q Consensus       183 ~~~~~~~----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  255 (382)
                      .-. +..    ...+.+.+.+++.+++..+..-+++..+.+...-+.  . ...-..++.+..+|.++...+|+.|+..+
T Consensus       273 g~~-E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTi  351 (526)
T COG5064         273 GPN-EKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTI  351 (526)
T ss_pred             CcH-HHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheee
Confidence            322 111    123456788999999998888888888887643221  1 11234567777889999999999999999


Q ss_pred             HHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhh-----hhhHHHHHhhccCCCccHH
Q 016814          256 KRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITC-----SRLLPVVINASKDRVPNIK  326 (382)
Q Consensus       256 ~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~-----~~~l~~l~~~l~d~~~~vR  326 (382)
                      +.+...-..+   .....++|.++.++....+.+|..|+++++......- .....     +-++..+..+|.-..-.+-
T Consensus       352 SNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkii  431 (526)
T COG5064         352 SNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKII  431 (526)
T ss_pred             cccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhccCccch
Confidence            9886421111   1345689999999999999999999999999764432 21222     2334445555543323355


Q ss_pred             HHHHHHHHHHhhhhhH---------HH----HH-HhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          327 FNVAKVLQSLIPIVDQ---------SM----VE-KTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       327 ~~a~~~l~~i~~~~~~---------~~----~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      ..++.++..+...-..         ..    .. ...+..+..+.+..+..+-..|+..+..+
T Consensus       432 ev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I~~~Q~s~n~~iy~KAYsIIe~f  494 (526)
T COG5064         432 EVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKF  494 (526)
T ss_pred             hhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHHHHhhhccccHHHHHHHHHHHHH
Confidence            5556666666542111         01    11 34556666677777777777666655543

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.46  E-value=1e-11  Score=103.02  Aligned_cols=188  Identities=18%  Similarity=0.244  Sum_probs=132.9

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----hhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      +.+.+.+..--.+.+|..|..++..+..++..-.+    ..+.+   .+.+.+...+.|....|-..|+..+..++..+|
T Consensus         6 ~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~   85 (228)
T PF12348_consen    6 EEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLG   85 (228)
T ss_dssp             GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence            34445554445788999999999999988765511    12222   333566677888888999999999999999988


Q ss_pred             hH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          264 PE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       264 ~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      ..  .+.+.++|.+++.+.+++..+|+.|..++..+.+.++   +...+ ++.+....+++++.+|..++..+..+....
T Consensus        86 ~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~---~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~  162 (228)
T PF12348_consen   86 SHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS---YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW  162 (228)
T ss_dssp             GGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS----H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred             HhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC---cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            74  3677899999999999999999999999999998877   22344 778888999999999999999999998888


Q ss_pred             h--HH-----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          341 D--QS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       341 ~--~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +  ..     .....+.+.+.++++|++++||..|.+++..+....|.
T Consensus       163 ~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  163 GSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             ----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred             cchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence            7  11     22367899999999999999999999999999888764

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.3e-11  Score=102.48  Aligned_cols=342  Identities=16%  Similarity=0.156  Sum_probs=245.0

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc---chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM---DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--  109 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~---~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--  109 (382)
                      .+....++-+++..+..+..++...+|+++-..+.....-   .+-+.+.+++.| ..+||..+..++.+++..-...  
T Consensus        84 res~epvl~llqs~d~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd-~vevqcnaVgCitnLaT~d~nk~k  162 (550)
T KOG4224|consen   84 RESNEPVLALLQSCDKCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTD-GVEVQCNAVGCITNLATFDSNKVK  162 (550)
T ss_pred             hhhhhHHHHHHhCcchhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCC-CcEEEeeehhhhhhhhccccchhh
Confidence            3344445567788889999999999999987776643322   234455666554 6778888888888887652222  


Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-h
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-I  186 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~  186 (382)
                      .....-+..+..+.+.++..||..+..++-.+...-...  .....-+|++.++++..+..||.-+..+++.++-.-. .
T Consensus       163 iA~sGaL~pltrLakskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~R  242 (550)
T KOG4224|consen  163 IARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRAR  242 (550)
T ss_pred             hhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHH
Confidence            122234555666889999999999999998887644322  2235667999999999999999999999887642211 1


Q ss_pred             hh---HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh--chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814          187 DL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       187 ~~---~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                      ..   ..+.++|.+..+..|.+.+++..+...+..++..-  ..+.....-+|.+.++++++.-..-.+...++..+.-.
T Consensus       243 k~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisih  322 (550)
T KOG4224|consen  243 KILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIH  322 (550)
T ss_pred             HHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccc
Confidence            11   11468999999999999999999999999887532  23334445688999999998888777777888776654


Q ss_pred             hChHH--HHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          262 FGPEW--AMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       262 ~~~~~--~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                      -+.+.  ....++..+..++.-. +..++..|...+..++-....+   .+..-.+|.+..++-|..-.+|...-.++..
T Consensus       323 plNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~  402 (550)
T KOG4224|consen  323 PLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQ  402 (550)
T ss_pred             cCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHH
Confidence            44432  1223455566666543 4678899999999987543322   2345678889999999988888887777777


Q ss_pred             Hhhh--hhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          336 LIPI--VDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       336 i~~~--~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ++-.  .........+.|.|..++.|.+.+||-+|+.|+..+.+
T Consensus       403 Lal~d~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  403 LALNDNDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHhccccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhh
Confidence            6543  22334557899999999999999999999999988764

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.44  E-value=3.7e-12  Score=114.64  Aligned_cols=253  Identities=19%  Similarity=0.230  Sum_probs=206.7

Q ss_pred             CCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC
Q 016814          124 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  203 (382)
Q Consensus       124 ~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d  203 (382)
                      .-.+..-|....+.|......++.+.....++|.+...+.-.+  --..++.-+-.+...+....+...++|.+.++++.
T Consensus       264 ~lks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~  341 (690)
T KOG1243|consen  264 RLKSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKS  341 (690)
T ss_pred             ccCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcC
Confidence            3345555666666666666666666666777777776654322  11112222333444455555778899999999999


Q ss_pred             CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcc
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH  283 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~  283 (382)
                      ++-.+|..+++.+..+...+.++.+.++++|.+...+.|.++.+|+.+++++..++..++.......++..+...-.|.+
T Consensus       342 ~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~  421 (690)
T KOG1243|consen  342 PDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEH  421 (690)
T ss_pred             cchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999988777788888888888889


Q ss_pred             hHHHHHHHHHHHHhccccChhhhhhhhH-HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCc
Q 016814          284 YLYRMTILRAISLLAPVMGSEITCSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l-~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~  362 (382)
                      ..+|....-|++.+++.+.+.. ...++ -.+...++|+-..-|.++...+....+.+.......+|+|.+..+.-|++.
T Consensus       422 ~~irtntticlgki~~~l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~  500 (690)
T KOG1243|consen  422 GGIRTNTTICLGKIAPHLAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEK  500 (690)
T ss_pred             Ccccccceeeecccccccchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCccc
Confidence            9999999999999998887764 44444 456678999999999999999999999999989999999999999999999


Q ss_pred             cHHhHHHHHHHHHHHHh
Q 016814          363 DVRFFATQAIQSIDHVM  379 (382)
Q Consensus       363 ~vr~~a~~al~~~~~~~  379 (382)
                      .||..|.+++..+-..+
T Consensus       501 ~vr~~a~~~i~~fl~kl  517 (690)
T KOG1243|consen  501 TVRDTAEKAIRQFLEKL  517 (690)
T ss_pred             chhhHHHHHHHHHHhhh
Confidence            99999999998876554

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.43  E-value=5.5e-12  Score=103.75  Aligned_cols=339  Identities=15%  Similarity=0.098  Sum_probs=225.9

Q ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHH---H
Q 016814           39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE---L  110 (382)
Q Consensus        39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~---~  110 (382)
                      |-+.+.+...|-+....++-.+..+...-....    ....++|.|++++.+. ..-..-.|+++|.+++..-+..   .
T Consensus        74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvV  153 (526)
T COG5064          74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVV  153 (526)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEE
Confidence            544444444555555555555555443222221    1235899999999543 4446778999999987754432   2


Q ss_pred             HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHhH-HHhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhc
Q 016814          111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDAT-IEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIG  185 (382)
Q Consensus       111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~-~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~~~  185 (382)
                      +-...+|.+..++.+++..||+.++++|+.++.-..  ++.. ....+..+..++.+..  -..-+++-+.+..++..-.
T Consensus       154 vd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGkn  233 (526)
T COG5064         154 VDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKN  233 (526)
T ss_pred             EeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCC
Confidence            223578999999999999999999999999985332  1111 1223333334433322  3555567777777776543


Q ss_pred             hh-h--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          186 ID-L--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       186 ~~-~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      +. .  .....+|.+.+++-..++.+-..++..++.++..-.+.   .+.-.+.+.+..+|.+++..|..-|+.++|.++
T Consensus       234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV  313 (526)
T COG5064         234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV  313 (526)
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence            31 2  23567999999999999999999999999987532211   112234566888999999999999999999988


Q ss_pred             HHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814          260 EEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVL  333 (382)
Q Consensus       260 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  333 (382)
                      ..-..+   ...-..++.+..++.++...+|..+++.++.+.-.-...   .....++|.++..+......+|..|+.++
T Consensus       314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~ae~k~kKEACWAi  393 (526)
T COG5064         314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAI  393 (526)
T ss_pred             ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHH
Confidence            533221   122346777888899999999999999999875332221   34467899999999998899999999999


Q ss_pred             HHHhhhhh--HHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          334 QSLIPIVD--QSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       334 ~~i~~~~~--~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ......-.  ++.    ..+.++..|..++.-.+..+-..+..++..+..
T Consensus       394 sNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk  443 (526)
T COG5064         394 SNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILK  443 (526)
T ss_pred             HhhhccccCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHh
Confidence            88765422  221    234555666666665666666666677666543

>TIGR02270 conserved hypothetical protein

Probab=99.41  E-value=8.8e-11  Score=103.74  Aligned_cols=241  Identities=15%  Similarity=0.032  Sum_probs=174.1

Q ss_pred             hHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           76 LVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        76 ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      .++.+...+ .|+++.++..++.++.....        ...+..+...+.|.++.||..++++|+.+..        +..
T Consensus        55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~~--------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~--------~~a  118 (410)
T TIGR02270        55 ATELLVSALAEADEPGRVACAALALLAQED--------ALDLRSVLAVLQAGPEGLCAGIQAALGWLGG--------RQA  118 (410)
T ss_pred             HHHHHHHHHhhCCChhHHHHHHHHHhccCC--------hHHHHHHHHHhcCCCHHHHHHHHHHHhcCCc--------hHH
Confidence            477777777 57778888877766653311        1236778888899999999999999987752        466


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  234 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  234 (382)
                      .+.+..+++++++.||..++.+++...    .+     -.+.+..+++|+++.||..++..++.+..        ....|
T Consensus       119 ~~~L~~~L~~~~p~vR~aal~al~~r~----~~-----~~~~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~  181 (410)
T TIGR02270       119 EPWLEPLLAASEPPGRAIGLAALGAHR----HD-----PGPALEAALTHEDALVRAAALRALGELPR--------RLSES  181 (410)
T ss_pred             HHHHHHHhcCCChHHHHHHHHHHHhhc----cC-----hHHHHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchH
Confidence            678888889999999998887766632    11     23456666789999999999999998753        23455


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHH
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  314 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  314 (382)
                      .+...+.|.++.||..|+..++.+.    .+    ...+.+.....++....+..+...+...    +.    ...++.+
T Consensus       182 ~L~~al~d~~~~VR~aA~~al~~lG----~~----~A~~~l~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L  245 (410)
T TIGR02270       182 TLRLYLRDSDPEVRFAALEAGLLAG----SR----LAWGVCRRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWL  245 (410)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHcC----CH----hHHHHHHHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHH
Confidence            5667799999999999999986653    22    2344555555666655555555555433    22    2677788


Q ss_pred             HhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ...++|+.  +|..++.+++.+..        ...++.|...+.|+.  ++..|.+++..|..
T Consensus       246 ~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~~l~d~~--~aR~A~eA~~~ItG  296 (410)
T TIGR02270       246 RELLQAAA--TRREALRAVGLVGD--------VEAAPWCLEAMREPP--WARLAGEAFSLITG  296 (410)
T ss_pred             HHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHHHhcCcH--HHHHHHHHHHHhhC
Confidence            88888854  99999999998864        456777777777654  89999999988764

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=4.3e-10  Score=102.23  Aligned_cols=285  Identities=16%  Similarity=0.128  Sum_probs=182.2

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      +|+-++|+++.+|..|++++..+--.    .+.+.++-.+.++..|.++.||+.|+.++.++-. ++++.. .+++..+.
T Consensus       113 fQk~L~DpN~LiRasALRvlSsIRvp----~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYs-Ld~e~k-~qL~e~I~  186 (968)
T KOG1060|consen  113 FQKALKDPNQLIRASALRVLSSIRVP----MIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYS-LDPEQK-DQLEEVIK  186 (968)
T ss_pred             HHhhhcCCcHHHHHHHHHHHHhcchh----hHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhc-CChhhH-HHHHHHHH
Confidence            57789999999999999999876432    2345666778889999999999999999998764 444443 47999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-C--------------
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-G--------------  146 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~--------------  146 (382)
                      .++.|.++-|--+|+.++..++..-  -..++.-...+..++.|-+.+=+..++..|...+.+- .              
T Consensus       187 ~LLaD~splVvgsAv~AF~evCPer--ldLIHknyrklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~  264 (968)
T KOG1060|consen  187 KLLADRSPLVVGSAVMAFEEVCPER--LDLIHKNYRKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGR  264 (968)
T ss_pred             HHhcCCCCcchhHHHHHHHHhchhH--HHHhhHHHHHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcc
Confidence            9999999999999888888765421  0122233344555556655555555555555443210 0              


Q ss_pred             -------------h---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHH
Q 016814          147 -------------K---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL  210 (382)
Q Consensus       147 -------------~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~  210 (382)
                                   +   +.-...++.-...++...++.|-.++++.+..++...   .. ..+...+..++.. +..++.
T Consensus       265 ~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~---~~-~~i~kaLvrLLrs-~~~vqy  339 (968)
T KOG1060|consen  265 SCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKN---QV-TKIAKALVRLLRS-NREVQY  339 (968)
T ss_pred             cccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHH---HH-HHHHHHHHHHHhc-CCcchh
Confidence                         0   0011334455555666777778777777776665432   22 3444455554433 345666


Q ss_pred             HHHHHhHHHHhhhch-------h-------------------------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814          211 AIIEYIPLLASQLGV-------G-------------------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  258 (382)
Q Consensus       211 ~~~~~l~~l~~~~~~-------~-------------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  258 (382)
                      ..+..+..++.....       .                         .-...+++-+..+.++.+.++-..+++++|..
T Consensus       340 vvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrC  419 (968)
T KOG1060|consen  340 VVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRC  419 (968)
T ss_pred             hhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            666666665432211       0                         00134666677777877778888888999998


Q ss_pred             HHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       259 ~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      +...+.  +.+..+..+..++++.+..+-..++..+..+.+.-
T Consensus       420 A~~~~s--v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~  460 (968)
T KOG1060|consen  420 ASRIGS--VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKD  460 (968)
T ss_pred             HHhhCc--hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhC
Confidence            887653  23456666666666666666666666666665443

>TIGR02270 conserved hypothetical protein

Probab=99.36  E-value=2.3e-10  Score=101.14  Aligned_cols=208  Identities=15%  Similarity=0.096  Sum_probs=119.2

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  117 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  117 (382)
                      +..+.+.+.|.++.||..+++.|+.+.        .....+.+..++.++++.||.+++.+++....         .-.+
T Consensus        88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~---------~~~~  150 (410)
T TIGR02270        88 LRSVLAVLQAGPEGLCAGIQAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGAHRH---------DPGP  150 (410)
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHhhcc---------ChHH
Confidence            455556666666667777777766433        13455666666677777777666655554211         1124


Q ss_pred             hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHH
Q 016814          118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI  197 (382)
Q Consensus       118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l  197 (382)
                      .+..+++|+++.||..++.+++.+..        ....|.+...+.|.++.||..++.++..+..        ....+.+
T Consensus       151 ~L~~~L~d~d~~Vra~A~raLG~l~~--------~~a~~~L~~al~d~~~~VR~aA~~al~~lG~--------~~A~~~l  214 (410)
T TIGR02270       151 ALEAALTHEDALVRAAALRALGELPR--------RLSESTLRLYLRDSDPEVRFAALEAGLLAGS--------RLAWGVC  214 (410)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHhhcc--------ccchHHHHHHHcCCCHHHHHHHHHHHHHcCC--------HhHHHHH
Confidence            55556667777777777777776653        2334445566677777777777766655432        1122333


Q ss_pred             HHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHh
Q 016814          198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE  277 (382)
Q Consensus       198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~  277 (382)
                      ..+..++.+.++..+...+...    |.    +..++.+..+++|+.  +|..++.+++.+..        ...++.+++
T Consensus       215 ~~~~~~~g~~~~~~l~~~lal~----~~----~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~--------p~av~~L~~  276 (410)
T TIGR02270       215 RRFQVLEGGPHRQRLLVLLAVA----GG----PDAQAWLRELLQAAA--TRREALRAVGLVGD--------VEAAPWCLE  276 (410)
T ss_pred             HHHHhccCccHHHHHHHHHHhC----Cc----hhHHHHHHHHhcChh--hHHHHHHHHHHcCC--------cchHHHHHH
Confidence            3333444444444444433332    21    245556666677654  77777777776542        336667777


Q ss_pred             hhcCcchHHHHHHHHHHHHhc
Q 016814          278 MINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       278 ~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      .+.|+.  +|..|.+++..+.
T Consensus       277 ~l~d~~--~aR~A~eA~~~It  295 (410)
T TIGR02270       277 AMREPP--WARLAGEAFSLIT  295 (410)
T ss_pred             HhcCcH--HHHHHHHHHHHhh
Confidence            776554  6677777777654

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.34  E-value=1.7e-09  Score=96.65  Aligned_cols=250  Identities=15%  Similarity=0.155  Sum_probs=149.4

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--h------
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--K------  147 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~------  147 (382)
                      +..-+..+.+|.++.||..|++++..+.+.+.-.   ..+.....+++.|.+..||.+|++.+..+++..+  .      
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~---~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e  275 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLS---KACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEE  275 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhhccccccc---HHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence            4444666667777777777777777766622221   2344555666777777777777777666665552  1      


Q ss_pred             HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH-------
Q 016814          148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-------  220 (382)
Q Consensus       148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~-------  220 (382)
                      ....+..+.-++..++|-+..||..+++.+|.+-.. +.+.+.+.+-.-+..  .+.-|+......+.+..-.       
T Consensus       276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~v-See~i~QTLdKKlms--~lRRkr~ahkrpk~l~s~GewSsGk~  352 (823)
T KOG2259|consen  276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQV-SEEIIQQTLDKKLMS--RLRRKRTAHKRPKALYSSGEWSSGKE  352 (823)
T ss_pred             hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHh-HHHHHHHHHHHHHhh--hhhhhhhcccchHHHHhcCCcccCcc
Confidence            112355566666677777777777777777766432 221111111111111  1111211111111111100       


Q ss_pred             --hhhchhh--------hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814          221 --SQLGVGF--------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI  290 (382)
Q Consensus       221 --~~~~~~~--------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a  290 (382)
                        ...+.+.        ....-...+...+.|+-.+||.+|+.++..++..-  ..|...-+..+..+++|....+|.-|
T Consensus       353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ss--P~FA~~aldfLvDMfNDE~~~VRL~a  430 (823)
T KOG2259|consen  353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSS--PGFAVRALDFLVDMFNDEIEVVRLKA  430 (823)
T ss_pred             ccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHhccHHHHHHHHH
Confidence              0000111        01112355677788888999999999999988532  23455677888899999989999999


Q ss_pred             HHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814          291 LRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       291 ~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  336 (382)
                      +.++..++..+.   ..+..++.++..+.|.++++|.+.-+.|+..
T Consensus       431 i~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  431 IFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            999998887633   4567788888999999999998877777654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.33  E-value=2.9e-10  Score=101.42  Aligned_cols=312  Identities=18%  Similarity=0.140  Sum_probs=207.0

Q ss_pred             hHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           11 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      ..+|..+......++..-++ ......+..-+..+..|.+.+||..|++++-.+.+.+.-   .+.......+.+.|.+.
T Consensus       172 ~~~~~~~~~~~~~lg~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL---~~~~Y~~A~~~lsD~~e  248 (823)
T KOG2259|consen  172 TGNRLLLYCFHLPLGVSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKL---SKACYSRAVKHLSDDYE  248 (823)
T ss_pred             ccchHHHHHHhhhcccCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccc---cHHHHHHHHHHhcchHH
Confidence            34455555555555443222 122334455467788999999999999999988873321   23467777889999999


Q ss_pred             HHHHHHHHHHHHHHHhhC--H------HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH-H
Q 016814           90 EVRIAAAGKVTKFCRILN--P------ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL-S  160 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~--~------~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~-~  160 (382)
                      .||.+|++.+.-++..++  .      .......+..+...+.|-++.||-.+++++|.+-+... +.    +..-+. +
T Consensus       249 ~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-e~----i~QTLdKK  323 (823)
T KOG2259|consen  249 DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-EI----IQQTLDKK  323 (823)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-HH----HHHHHHHH
Confidence            999999999988887762  1      13445677888889999999999999999999865322 11    111111 1


Q ss_pred             hhcCCChHHHHHHHHhhH-Hhhhh--------hch----hh---HhhhHHH-----HHHHHhcCCCchHHHHHHHHhHHH
Q 016814          161 LLKDEFPDVRLNIISKLD-QVNQV--------IGI----DL---LSQSLLP-----AIVELAEDRHWRVRLAIIEYIPLL  219 (382)
Q Consensus       161 ~l~d~~~~vr~~~~~~l~-~~~~~--------~~~----~~---~~~~llp-----~l~~~~~d~~~~vr~~~~~~l~~l  219 (382)
                      ++++   .-|...+.-=+ .+...        ++.    +.   -...++|     .+..-+.|+..+||.++...+..+
T Consensus       324 lms~---lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L  400 (823)
T KOG2259|consen  324 LMSR---LRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL  400 (823)
T ss_pred             Hhhh---hhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence            2221   11111111111 11100        111    11   1123444     345556888999999999999999


Q ss_pred             HhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814          220 ASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       220 ~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  299 (382)
                      +..-+  .|...-+..+..+++|+...||..|+.++..++....   ..+..++.+.+.+.|.+..+|++.-..++. ++
T Consensus       401 a~ssP--~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~---i~eeql~~il~~L~D~s~dvRe~l~elL~~-~~  474 (823)
T KOG2259|consen  401 ATSSP--GFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA---IREEQLRQILESLEDRSVDVREALRELLKN-AR  474 (823)
T ss_pred             HcCCC--CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe---ecHHHHHHHHHHHHhcCHHHHHHHHHHHHh-cC
Confidence            86432  2345678889999999999999999999999998743   356788999999999999999998888866 33


Q ss_pred             ccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          300 VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       300 ~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      .-..+ .....+..++..++- -|.=|.....+++.|+++.+
T Consensus       475 ~~d~~-~i~m~v~~lL~~L~k-yPqDrd~i~~cm~~iGqnH~  514 (823)
T KOG2259|consen  475 VSDLE-CIDMCVAHLLKNLGK-YPQDRDEILRCMGRIGQNHR  514 (823)
T ss_pred             CCcHH-HHHHHHHHHHHHhhh-CCCCcHHHHHHHHHHhccCh
Confidence            33333 455556666666543 35556777778888876654

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=99.32  E-value=4e-11  Score=108.08  Aligned_cols=253  Identities=15%  Similarity=0.197  Sum_probs=198.2

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE   88 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~   88 (382)
                      ++...|..-.+.+....+.++.+.....++|.+...+.-.+  .-...+..+-.+...+..+.+...++|.+.+++..++
T Consensus       266 ks~~eK~~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~--a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D  343 (690)
T KOG1243|consen  266 KSVEEKQKFFSGLIDRLDNFPEEIIASKVLPILLAALEFGD--AASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD  343 (690)
T ss_pred             CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc--cchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence            45666777777777777778777777788888777664333  1223334444555666666677789999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChH
Q 016814           89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD  168 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  168 (382)
                      ..+|..-++.+..++..++++...+.++|.+...+.|.++.+|...++++..++..++.......++..+..+-.|++..
T Consensus       344 r~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~d~~~~  423 (690)
T KOG1243|consen  344 RQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQPDEHGG  423 (690)
T ss_pred             hHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCccccCc
Confidence            99999999999999999999888888999999999999999999999999999988887766678888888888888899


Q ss_pred             HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814          169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  248 (382)
                      .|.+..-+++++...+.+......+.-.+...++|+...-|.+....+....+.+.......+++|.+..+..|++..||
T Consensus       424 irtntticlgki~~~l~~~~R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr  503 (690)
T KOG1243|consen  424 IRTNTTICLGKIAPHLAASVRKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVR  503 (690)
T ss_pred             ccccceeeecccccccchhhhccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchh
Confidence            99998888888887765544423334445556788888888888888887777777777777888988888899999999


Q ss_pred             HHHHHHHHHHHHHhC
Q 016814          249 DAAANNLKRLAEEFG  263 (382)
Q Consensus       249 ~~a~~~l~~~~~~~~  263 (382)
                      ..|.+++..+.....
T Consensus       504 ~~a~~~i~~fl~kl~  518 (690)
T KOG1243|consen  504 DTAEKAIRQFLEKLE  518 (690)
T ss_pred             hHHHHHHHHHHhhhh
Confidence            999888888876553

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=99.30  E-value=4.1e-10  Score=106.27  Aligned_cols=187  Identities=20%  Similarity=0.270  Sum_probs=157.9

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH-
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW-  266 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~-  266 (382)
                      ..+-|.+..-+.+++|..|..+++.+....+.-+   ...+...+...+-..+.|.+..|-..++..+..++..++..+ 
T Consensus       252 ~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~  331 (815)
T KOG1820|consen  252 SKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFR  331 (815)
T ss_pred             hhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhH
Confidence            4566777777889999999999999988877655   122334455556667889999999999999999999988743 


Q ss_pred             -HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---
Q 016814          267 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---  342 (382)
Q Consensus       267 -~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---  342 (382)
                       +...++|.++..+++....+|+++..++-.++..++.    ..+.+.+..++++.++.+|..+...+......+++   
T Consensus       332 ~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l----~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~  407 (815)
T KOG1820|consen  332 KYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTPL----SKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTV  407 (815)
T ss_pred             HHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhcccH----HHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCc
Confidence             6678999999999999999999999999998875443    46778888999999999999999999999888873   


Q ss_pred             -HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          343 -SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       343 -~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                       ......+.|.+.+..+|.+.+||.+|..+++.+..++|.
T Consensus       408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge  447 (815)
T KOG1820|consen  408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE  447 (815)
T ss_pred             chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence             345688999999999999999999999999999999985

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=99.30  E-value=2.8e-10  Score=94.47  Aligned_cols=188  Identities=21%  Similarity=0.253  Sum_probs=129.9

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HH---HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LA---IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~---~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .+.+.|...-.+.+|..|..++..|..++....+.    .+   ...+++.+...+.|....|-..++.++..++..++.
T Consensus         7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~   86 (228)
T PF12348_consen    7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS   86 (228)
T ss_dssp             GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence            34444544446778888888888888887765111    11   223445666777888888999999999999988876


Q ss_pred             Hh--HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          148 DA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       148 ~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      ..  ..+.++|.+.+.+.|+...+|..+..++..++...+ ..   ..+.+.+....+++++.+|..++..+..+....+
T Consensus        87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~---~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~  163 (228)
T PF12348_consen   87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSP---KILLEILSQGLKSKNPQVREECAEWLAIILEKWG  163 (228)
T ss_dssp             GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT--
T ss_pred             hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcc
Confidence            53  347888999999999999999999999999998876 22   2237888888899999999999999999988877


Q ss_pred             --hhh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH
Q 016814          225 --VGF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  265 (382)
Q Consensus       225 --~~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  265 (382)
                        ...     ..+.+.+.+...+.|++++||+.|-.++..+.+.+|..
T Consensus       164 ~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~  211 (228)
T PF12348_consen  164 SDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPER  211 (228)
T ss_dssp             ---GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HH
T ss_pred             chHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHh
Confidence              121     23578999999999999999999999999999888763

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.29  E-value=1.1e-09  Score=96.36  Aligned_cols=291  Identities=12%  Similarity=0.079  Sum_probs=197.2

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      .++.|++-..++|.-..|...+++++..++...-..+..+..+..+..+++.+....|=+|.+.+..++...+..  ...
T Consensus       263 ~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~k--v~v  340 (898)
T COG5240         263 LQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQK--VSV  340 (898)
T ss_pred             HHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCce--eee
Confidence            457788888888877888888888888877654333345667788889999999999999999999988654422  112


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      .-+-+..+++|++..+-.-+   +..+.+.-..+.+ +.++..+..+..|-+..-+.-++..+..++-.++.+.  ..++
T Consensus       341 cN~evEsLIsd~Nr~IstyA---ITtLLKTGt~e~i-drLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--~s~l  414 (898)
T COG5240         341 CNKEVESLISDENRTISTYA---ITTLLKTGTEETI-DRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--LSYL  414 (898)
T ss_pred             cChhHHHHhhcccccchHHH---HHHHHHcCchhhH-HHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--HHHH
Confidence            23556677777775554444   4444444333333 6666666666666555555666666666666555442  2455


Q ss_pred             HHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814          234 ALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP  312 (382)
Q Consensus       234 ~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  312 (382)
                      ..+...|. ....+.+..++.++....+..+.  ..+..+..+.+++.|..+.  +-++..++.+++..+...--...+-
T Consensus       415 ~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~--skEraLe~LC~fIEDcey~--~I~vrIL~iLG~EgP~a~~P~~yvr  490 (898)
T COG5240         415 DFLGSSLLQEGGLEFKKYMVDAISDAMENDPD--SKERALEVLCTFIEDCEYH--QITVRILGILGREGPRAKTPGKYVR  490 (898)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHHHhhCch--HHHHHHHHHHHHHhhcchh--HHHHHHHHHhcccCCCCCCcchHHH
Confidence            56655444 45678899999999999987643  2466777888888887653  3466667777654432211122223


Q ss_pred             HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      .+.+.+-=+|..||.+|+.+|..++-........+.+...|..+++|.|.+||..|.-++..+-
T Consensus       491 hIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         491 HIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            3333333356889999999999998777665566788888999999999999999998887654

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=2.1e-09  Score=98.13  Aligned_cols=349  Identities=14%  Similarity=0.125  Sum_probs=205.8

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR   85 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~   85 (382)
                      +.|++|.+|..|++..+.+-    -+.+...+..-+.++.+|.++.+|..++-+...+-..-++-.....+++.+..++.
T Consensus        95 ~~d~np~iR~lAlrtm~~l~----v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~  170 (734)
T KOG1061|consen   95 CEDPNPLIRALALRTMGCLR----VDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLS  170 (734)
T ss_pred             CCCCCHHHHHHHhhceeeEe----ehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhc
Confidence            67899999999998876653    34566777777888999999999999999988766433333334568999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-HHHhhHHHHHHh
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSL  161 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~  161 (382)
                      |+++.|-..|+.++..+.+.-...   .....++..+.+.++..+.+-+.....++....   +++. -...+...+...
T Consensus       171 D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~---p~d~~ea~~i~~r~~p~  247 (734)
T KOG1061|consen  171 DSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTEWGQIFILDCLAEYV---PKDSREAEDICERLTPR  247 (734)
T ss_pred             CCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhhhhHHHHHHHHHhcC---CCCchhHHHHHHHhhhh
Confidence            999999999999999987755321   222234444444555555554555544444333   3222 224566666666


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh------------
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF------------  227 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~------------  227 (382)
                      +...++.|-..+.+.+.........  +.+...+-|.+..++..+. .+...+++.+..+....+.-.            
T Consensus       248 Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kyn  326 (734)
T KOG1061|consen  248 LQHANSAVVLSAVKVILQLVKYLKQVNELLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEIKVFFCKYN  326 (734)
T ss_pred             hccCCcceEeehHHHHHHHHHHHHHHHHHHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecC
Confidence            6666777766666666665554443  1222444444444444433 555555555555443332100            


Q ss_pred             --------------------hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-------
Q 016814          228 --------------------FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-------  280 (382)
Q Consensus       228 --------------------~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-------  280 (382)
                                          ..++++.-+.....+-+.+.-..+++++|.++......   +..++.++++++       
T Consensus       327 DPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~---~~cv~~lLell~~~~~yvv  403 (734)
T KOG1061|consen  327 DPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS---NDCVSILLELLETKVDYVV  403 (734)
T ss_pred             CchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh---hhhHHHHHHHHhhccccee
Confidence                                01223333334444555556666677777776544332   223333333322       


Q ss_pred             ------------------------------C-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHH
Q 016814          281 ------------------------------N-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV  329 (382)
Q Consensus       281 ------------------------------~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a  329 (382)
                                                    + .++..|.+.++.++..++.+...   .+++..++....|+...|+..-
T Consensus       404 qE~~vvi~dilRkyP~~~~~vv~~l~~~~~sl~epeak~amiWilg~y~~~i~~a---~elL~~f~en~~dE~~~Vql~L  480 (734)
T KOG1061|consen  404 QEAIVVIRDILRKYPNKYESVVAILCENLDSLQEPEAKAALIWILGEYAERIENA---LELLESFLENFKDETAEVQLEL  480 (734)
T ss_pred             eehhHHHHhhhhcCCCchhhhhhhhcccccccCChHHHHHHHHHHhhhhhccCcH---HHHHHHHHhhcccchHHHHHHH
Confidence                                          1 23556777777777777666643   4677777777888777777776


Q ss_pred             HHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHH
Q 016814          330 AKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFAT  369 (382)
Q Consensus       330 ~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~  369 (382)
                      +.+.-.+.-..+. .....+...|.....| .++++|-.+.
T Consensus       481 Lta~ik~Fl~~p~-~tq~~l~~vL~~~~~d~~~~dlrDr~l  520 (734)
T KOG1061|consen  481 LTAAIKLFLKKPT-ETQELLQGVLPLATADTDNPDLRDRGL  520 (734)
T ss_pred             HHHHHHHHhcCCc-cHHHHHHHHHhhhhccccChhhhhhHH
Confidence            6666555443332 2223333333334444 4557887654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=1.6e-08  Score=92.65  Aligned_cols=347  Identities=16%  Similarity=0.177  Sum_probs=212.5

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      +..|--.|+-+++.+   .++ +....+.|-+.++++..++.+|+-|+.+...+....++-  .+.+++.+.+++.|.+.
T Consensus       120 nq~vVglAL~alg~i---~s~-EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL~ek~h  193 (866)
T KOG1062|consen  120 NQYVVGLALCALGNI---CSP-EMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLLCEKHH  193 (866)
T ss_pred             CeeehHHHHHHhhcc---CCH-HHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHHhhcCC
Confidence            333334444444444   333 456779999999999999999999999999988766553  24578888889999998


Q ss_pred             HHHHHHHHHHHHHHHhhCHH-----HHHHhhhHhhhhhc-----------CCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           90 EVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELS-----------SDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~~-----------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      .|-.+++..+..+++.-+..     .....++..+..+.           .=++|..+...++.|..+.+.-.+  ..+.
T Consensus       194 GVL~~~l~l~~e~c~~~~~~l~~fr~l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~d--aSd~  271 (866)
T KOG1062|consen  194 GVLIAGLHLITELCKISPDALSYFRDLVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDAD--ASDL  271 (866)
T ss_pred             ceeeeHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCcc--HHHH
Confidence            89888888888888753322     12223333333332           124667777777777777653221  1112


Q ss_pred             hHHHHHHhh-----------------------cCCChHHHHHHHHhhHHhhhhh-------ch----------hhHhhhH
Q 016814          154 LLPIFLSLL-----------------------KDEFPDVRLNIISKLDQVNQVI-------GI----------DLLSQSL  193 (382)
Q Consensus       154 l~~~l~~~l-----------------------~d~~~~vr~~~~~~l~~~~~~~-------~~----------~~~~~~l  193 (382)
                      +-.++.+..                       -+++..+|..++..+++|...-       +-          ....+..
T Consensus       272 M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrH  351 (866)
T KOG1062|consen  272 MNDILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRH  351 (866)
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHH
Confidence            222222221                       1356778999999998876431       11          1223566


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHH---
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAM---  268 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~---  268 (382)
                      -..+.++++|++..+|+.+++..-.+...-....    ++.-++.+|...+.+.|...+.-+..+++.+.++  |+.   
T Consensus       352 r~tIleCL~DpD~SIkrralELs~~lvn~~Nv~~----mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtm  427 (866)
T KOG1062|consen  352 RSTILECLKDPDVSIKRRALELSYALVNESNVRV----MVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTM  427 (866)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHhccccHHH----HHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHH
Confidence            7788999999999999999998877765444333    3333444455557777888777777787777653  222   


Q ss_pred             ------------hhhHHHHHhhhcCc-------------------------chHHHHHHHHHHHHhccccCh--------
Q 016814          269 ------------QHITPQVLEMINNP-------------------------HYLYRMTILRAISLLAPVMGS--------  303 (382)
Q Consensus       269 ------------~~l~~~l~~~l~~~-------------------------~~~~r~~a~~~l~~l~~~~~~--------  303 (382)
                                  .++...++.++.+.                         +...-+.+.|+++..+..+-.        
T Consensus       428 l~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~  507 (866)
T KOG1062|consen  428 LKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPI  507 (866)
T ss_pred             HHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCC
Confidence                        22333333333221                         223455677888777632111        


Q ss_pred             hhhhhhhHHHHHhhccCC--CccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHH
Q 016814          304 EITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQ  370 (382)
Q Consensus       304 ~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~  370 (382)
                      ......++..+.+.+..-  ...++.-++.++.++...+...  ...+...+......-+.++++.|.+
T Consensus       508 ~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~--~~ri~~lI~~~~~s~~~elQQRa~E  574 (866)
T KOG1062|consen  508 KVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS--SERIKQLISSYKSSLDTELQQRAVE  574 (866)
T ss_pred             cCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc--HHHHHHHHHHhcccccHHHHHHHHH
Confidence            112234555554444322  2668888999999888776542  3555555666666666667666654

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=99.22  E-value=4.3e-07  Score=82.06  Aligned_cols=340  Identities=18%  Similarity=0.163  Sum_probs=210.7

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----c-CCCHHHHHHHHHHHHHHHHHhCCcc-------ccc-chHH
Q 016814           12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----Q-DKSWRVRYMVANQLYELCEAVGPEP-------TRM-DLVP   78 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~-d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~-~ll~   78 (382)
                      .-.....+++..++.   ...+.+.+.+.+.+.+    + ..+...-..++..+..+.+....+.       +.+ .++|
T Consensus        17 ~~~~~~L~~l~~ls~---~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~   93 (415)
T PF12460_consen   17 SNYERILEALAALST---SPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVP   93 (415)
T ss_pred             hHHHHHHHHHHHHHC---ChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHH
Confidence            445566666666665   3344455555444433    2 3366777888888888877665433       112 2777


Q ss_pred             HHHHhcCC-----C--cHHHHHHHHHHHHHHHHhhCHHHH---HHhhhHhhhh-----hcC-CCc--hHHHHHHHHHHHh
Q 016814           79 AYVRLLRD-----N--EAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKE-----LSS-DSS--QHVRSALASVIMG  140 (382)
Q Consensus        79 ~l~~~l~d-----~--~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~~l~~-----~~~-d~~--~~vr~~a~~~l~~  140 (382)
                      .+.+....     .  ++.+-..+...+..+.+.++.+..   .+.+...+..     -+. +..  +.........+..
T Consensus        94 ~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  173 (415)
T PF12460_consen   94 RLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSA  173 (415)
T ss_pred             HHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHH
Confidence            77765522     2  256777777777777888877643   2333333330     000 111  1112222222223


Q ss_pred             hccccChHhH---HHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh-cCCCchHHHHHHHH
Q 016814          141 MAPLLGKDAT---IEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEY  215 (382)
Q Consensus       141 l~~~~~~~~~---~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~  215 (382)
                      +...+.++..   .+.++.-+.++ .+.+++..|..+++.++.+...+..+...+.++..+.... .......|...++.
T Consensus       174 il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~  253 (415)
T PF12460_consen  174 ILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQSISSSEDSELRPQALEI  253 (415)
T ss_pred             HHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhhhcccCCcchhHHHHHH
Confidence            3323333322   22344444444 4445699999999999999877655543355555555544 44455566666666


Q ss_pred             hHHHHhhh--chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---------------hHHHHhhhHHHHHhh
Q 016814          216 IPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---------------PEWAMQHITPQVLEM  278 (382)
Q Consensus       216 l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---------------~~~~~~~l~~~l~~~  278 (382)
                      +.-+.+.+  ........+...+..++.|  +++...++++++-+....+               ++.+...++|.+.+.
T Consensus       254 ~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~  331 (415)
T PF12460_consen  254 LIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEG  331 (415)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHH
Confidence            65554433  1122234577777788887  7788889999888876421               234567799999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHH
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCL  353 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l  353 (382)
                      +++.+...|...+.+++.+.++.+.+   ...+.++|.+++.+.-+++.+|.++++++..+...-..-  ...+.++|.|
T Consensus       332 ~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~L  411 (415)
T PF12460_consen  332 FKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRL  411 (415)
T ss_pred             HhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            98888779999999999999998876   356789999999999999999999999999988755221  1234566655


Q ss_pred             HHh
Q 016814          354 VEL  356 (382)
Q Consensus       354 ~~l  356 (382)
                      .++
T Consensus       412 L~l  414 (415)
T PF12460_consen  412 LKL  414 (415)
T ss_pred             Hhc
Confidence            543

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=99.18  E-value=1.2e-07  Score=88.46  Aligned_cols=265  Identities=16%  Similarity=0.160  Sum_probs=167.8

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR   85 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~   85 (382)
                      +.+.++..|..|++.+.+... .|. + .+.+.|-+.+.....|.++++..--.+..+++.-+.+..  -.++.+.+-++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~-~G~-d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~l--LavNti~kDl~  102 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMS-LGE-D-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELAL--LAVNTIQKDLQ  102 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHh-cCC-C-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHH--HHHHHHHhhcc
Confidence            345667778888877655433 222 2 455666666666688889999999998888876553322  35888889999


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh-hHHHHHHhhcC
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ-LLPIFLSLLKD  164 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~-l~~~l~~~l~d  164 (382)
                      |+++.+|..|++.++.+    +...+...+++.++++++|+++.||..|+-++..+-+ ++++...+. ....+..++.|
T Consensus       103 d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~~D  177 (757)
T COG5096         103 DPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELVAD  177 (757)
T ss_pred             CCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHhhC
Confidence            99999999999998864    4455667889999999999999999999999998865 344444444 77888889999


Q ss_pred             CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCch--HHHHHHHHhHHHHhhhchhhhH-HHHHHHHHHHhc
Q 016814          165 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR--VRLAIIEYIPLLASQLGVGFFD-DKLGALCMQWLQ  241 (382)
Q Consensus       165 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~--vr~~~~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~  241 (382)
                      ++|.|..+|..++..+..... ..+...+.-.+.++ .=..|.  ....-...+..+.......... ..+...+...+.
T Consensus       178 ~dP~Vi~nAl~sl~~i~~e~a-~~~~~~~~~~i~~l-~~~~~~~~~~~~~~~~le~L~~~~~~~~~s~~~~~~~~~~~~~  255 (757)
T COG5096         178 SDPIVIANALASLAEIDPELA-HGYSLEVILRIPQL-DLLSLSVSTEWLLLIILEVLTERVPTTPDSAEDFEERLSPPLQ  255 (757)
T ss_pred             CCchHHHHHHHHHHHhchhhh-hhHHHHHHHHhhhc-cchhhhhhHHHHHHHHHHHHHccCCCCCCcHHHHHHhccchhh
Confidence            999999999999988865411 11112221111111 001122  1222222333333222211111 122222333345


Q ss_pred             cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc
Q 016814          242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP  282 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~  282 (382)
                      ..+..+-..+++.+-.+........+.....|.+..++..+
T Consensus       256 ~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~  296 (757)
T COG5096         256 HNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP  296 (757)
T ss_pred             hCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC
Confidence            56777777777777777766655444444555555555444

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=99.17  E-value=8.1e-09  Score=91.11  Aligned_cols=293  Identities=13%  Similarity=0.146  Sum_probs=192.0

Q ss_pred             hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh-CCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH
Q 016814           32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV-GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL  110 (382)
Q Consensus        32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~  110 (382)
                      +...++.|++..+++|+-.-|...+++.+-.++..- +++. ....+..+..++..+....|-+|++.|..++...+...
T Consensus       260 q~~~q~rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~-~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv  338 (898)
T COG5240         260 QALLQLRPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQF-VDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKV  338 (898)
T ss_pred             HHHHHHHHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHH-HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCcee
Confidence            456778999999999999999999999988887654 3333 35567777888899989999999999999987665541


Q ss_pred             HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHh
Q 016814          111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  190 (382)
Q Consensus       111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~  190 (382)
                        ...=+-+..++.|.+..+-.-|+..+-.-    |.+...+.++..+..++.|-+..-+.-++.++..++-..+.+.  
T Consensus       339 --~vcN~evEsLIsd~Nr~IstyAITtLLKT----Gt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~--  410 (898)
T COG5240         339 --SVCNKEVESLISDENRTISTYAITTLLKT----GTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKK--  410 (898)
T ss_pred             --eecChhHHHHhhcccccchHHHHHHHHHc----CchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHH--
Confidence              22335677788888877666665555443    3355667888888888888777777777777776665554432  


Q ss_pred             hhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh
Q 016814          191 QSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ  269 (382)
Q Consensus       191 ~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  269 (382)
                      ..++..+...+ +.....-+..++..+..+.+..+..  .+..+..+-..+.|...  -+.++..++-+.+.-+...-..
T Consensus       411 ~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s--kEraLe~LC~fIEDcey--~~I~vrIL~iLG~EgP~a~~P~  486 (898)
T COG5240         411 LSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS--KERALEVLCTFIEDCEY--HQITVRILGILGREGPRAKTPG  486 (898)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH--HHHHHHHHHHHHhhcch--hHHHHHHHHHhcccCCCCCCcc
Confidence            33444444433 3445566777777777666644321  12233333334444322  1223333333333221111122


Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  337 (382)
                      ..+.++.+.+.=.+..+|.+|+.++.+++-+.......+.+...+-++++|...+||..|.-++..+-
T Consensus       487 ~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~  554 (898)
T COG5240         487 KYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQSVENALKRCLNDQDDEVRDRASFLLRNMR  554 (898)
T ss_pred             hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhh
Confidence            34445555555567789999999999988665544455667777888999999999999999888775

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.15  E-value=1.8e-08  Score=92.16  Aligned_cols=327  Identities=16%  Similarity=0.150  Sum_probs=195.0

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  113 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  113 (382)
                      ...+.|-+.++..-.|-..++.+-..+.+.+..-+...  -..++.+..-+.|++|.+|.-|+..++.+    +.+.+.+
T Consensus        47 vSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a--~~avnt~~kD~~d~np~iR~lAlrtm~~l----~v~~i~e  120 (734)
T KOG1061|consen   47 VSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLA--ILAVNTFLKDCEDPNPLIRALALRTMGCL----RVDKITE  120 (734)
T ss_pred             hHhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHH--HhhhhhhhccCCCCCHHHHHHHhhceeeE----eehHHHH
Confidence            45567777777777778888888888888776443322  23578888888999999999998887744    3344556


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHh
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLS  190 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~  190 (382)
                      .+...+.++++|.++.||..++-+...+-..-+.......+++.+..++.|+++.|-.++..++..+.+.-..   -.+.
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~  200 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN  200 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc
Confidence            7888899999999999999999988888754443334468889999999999999999999999988765431   1111


Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHH
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWA  267 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~  267 (382)
                      ..++..+.+.++.-+..-+...   +..++....... -...++..+...+...+..|--.+.+.+-.+.+.+..  +.+
T Consensus       201 ~~~~~~lL~al~ec~EW~qi~I---L~~l~~y~p~d~~ea~~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~  277 (734)
T KOG1061|consen  201 PQLINKLLEALNECTEWGQIFI---LDCLAEYVPKDSREAEDICERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNELL  277 (734)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHH---HHHHHhcCCCCchhHHHHHHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHHHH
Confidence            2222223332222221112333   333333332222 1234666666667777777777777777766665544  233


Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHH
Q 016814          268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK  347 (382)
Q Consensus       268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~  347 (382)
                      ...+-|.+..++..+. .+...++.-+..+...... .+..++ -.|+--.+|+.+ |+..-++.+..++..    ....
T Consensus       278 ~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~-~~~~~~-~~Ff~kynDPiY-vK~eKleil~~la~~----~nl~  349 (734)
T KOG1061|consen  278 FKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPE-ILKVEI-KVFFCKYNDPIY-VKLEKLEILIELAND----ANLA  349 (734)
T ss_pred             HHHhcccceeeecccc-hhhHHHHhhHHHHHHhChH-HHHhHh-HeeeeecCCchh-hHHHHHHHHHHHhhH----hHHH
Confidence            3445555555554444 5555566555555443332 111111 111112233322 444444544444321    2233


Q ss_pred             hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          348 TIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +++..+.....+-|.+.-..+.+|++.++-
T Consensus       350 qvl~El~eYatevD~~fvrkaIraig~~ai  379 (734)
T KOG1061|consen  350 QVLAELKEYATEVDVDFVRKAVRAIGRLAI  379 (734)
T ss_pred             HHHHHHHHhhhhhCHHHHHHHHHHhhhhhh
Confidence            455666666666666655566666665543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.12  E-value=1.3e-06  Score=82.93  Aligned_cols=374  Identities=18%  Similarity=0.150  Sum_probs=218.5

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC-cccccchHHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-EPTRMDLVPAYV   81 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~   81 (382)
                      ..++|.+..||-.|++.++.+...++.+ ..++++.-+.++.. -+++..=..+|-.|+.++..--- ......++|.+.
T Consensus       348 s~l~d~dt~VrWSaAKg~grvt~rlp~~-Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~l~dVvplI~  426 (1133)
T KOG1943|consen  348 SALSDTDTVVRWSAAKGLGRVTSRLPPE-LADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSLLEDVVPLIL  426 (1133)
T ss_pred             HhccCCcchhhHHHHHHHHHHHccCcHH-HHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            3467899999999999999999999853 33333333333332 11234445899999888853211 111235788887


Q ss_pred             HhcC--------CCcHHHHHHHHHHHHHHHHhhCHHHH---HHhhhH-hhhhhcCCCchHHHHHHHHHHHhhccccCh--
Q 016814           82 RLLR--------DNEAEVRIAAAGKVTKFCRILNPELA---IQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGK--  147 (382)
Q Consensus        82 ~~l~--------d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  147 (382)
                      ..+.        .....||.+|+..+=.+++...+...   .+.+.+ .+...+-|.+..+|.+|.-++-+.....|.  
T Consensus       427 kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE~VGR~~n~p  506 (1133)
T KOG1943|consen  427 KALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQENVGRQGNFP  506 (1133)
T ss_pred             HHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHHHhccCCCCC
Confidence            6553        23467999999999999988776633   333434 334467799999999998887765433221  


Q ss_pred             ---H-------------------------hHHHhhHHHHHHhh----cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814          148 ---D-------------------------ATIEQLLPIFLSLL----KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  195 (382)
Q Consensus       148 ---~-------------------------~~~~~l~~~l~~~l----~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp  195 (382)
                         +                         .+....-|++..++    ..-++.+|..++.++..+....+ +......+|
T Consensus       507 ~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~p-k~~a~~~L~  585 (1133)
T KOG1943|consen  507 HGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEP-KYLADYVLP  585 (1133)
T ss_pred             CchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhH-Hhhcccchh
Confidence               0                         01122334444443    34578899999999999655432 222233333


Q ss_pred             HHHHHhcCCCchHHHHHHHHhHHHH-------------------------------------------------hhh---
Q 016814          196 AIVELAEDRHWRVRLAIIEYIPLLA-------------------------------------------------SQL---  223 (382)
Q Consensus       196 ~l~~~~~d~~~~vr~~~~~~l~~l~-------------------------------------------------~~~---  223 (382)
                      .+.......+...|....-..+.+.                                                 +.+   
T Consensus       586 ~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~~~Ie~~s~s  665 (1133)
T KOG1943|consen  586 PLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATLKFIEQLSLS  665 (1133)
T ss_pred             hhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHHHHHHHhhhc
Confidence            3333322222222222221111111                                                 100   


Q ss_pred             ch----hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HH-HHhhhHHHHHhhhcCc-chHHHHHHHHHHHH
Q 016814          224 GV----GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW-AMQHITPQVLEMINNP-HYLYRMTILRAISL  296 (382)
Q Consensus       224 ~~----~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~-~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~  296 (382)
                      ..    +.+......++.+.+.+++ .+|.+|..+++.++..+-. +. ....++...+..+.+. +..+|.....+++.
T Consensus       666 ~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~  744 (1133)
T KOG1943|consen  666 KDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGV  744 (1133)
T ss_pred             cchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHcc
Confidence            01    1111223333444445556 7899999999999876532 21 2223556666666666 57888888888777


Q ss_pred             hccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhH-------HHHHHhHHHHHHHhcCCCCcc----H
Q 016814          297 LAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQ-------SMVEKTIRPCLVELTEDPDVD----V  364 (382)
Q Consensus       297 l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~-------~~~~~~i~~~l~~l~~d~~~~----v  364 (382)
                      +....-.-...+++...++...- |..+.-|...+.++..+....+.       +.+...++.++.....|..-+    |
T Consensus       745 lp~~~i~~~~q~~lc~~~l~~~p~d~~a~aR~~~V~al~~v~~~~~~~~~~~~~~k~~e~LL~~lddYttd~rGDVGswV  824 (1133)
T KOG1943|consen  745 LPSELIHRHLQEKLCKLVLELLPSDAWAEARQQNVKALAHVCKTVTSLLFSESIEKFRETLLNALDDYTTDSRGDVGSWV  824 (1133)
T ss_pred             CcHHhhchHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcccccCccHHHHH
Confidence            65322111234445444444433 33677899999999999888772       233345555555555554333    7


Q ss_pred             HhHHHHHHHHHHHHhc
Q 016814          365 RFFATQAIQSIDHVMM  380 (382)
Q Consensus       365 r~~a~~al~~~~~~~~  380 (382)
                      |..|.+++..+...+.
T Consensus       825 ReaAm~al~~~~~~l~  840 (1133)
T KOG1943|consen  825 REAAMKALSSLLDTLS  840 (1133)
T ss_pred             HHHHHHHHHhhhhhhc
Confidence            9999999988876554

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.09  E-value=1.8e-06  Score=78.58  Aligned_cols=358  Identities=13%  Similarity=0.108  Sum_probs=199.5

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      .|++..-|.+|+.|+-.+-.+--..+. . ...-.|.+.+-+.|+|+.|..+|+..+=.+++.-+....  .+-|.|.++
T Consensus       151 tLL~sskpYvRKkAIl~lykvFLkYPe-A-lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL--~LAP~ffkl  226 (877)
T KOG1059|consen  151 TLLNSSKPYVRKKAILLLYKVFLKYPE-A-LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL--QLAPLFYKL  226 (877)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHhhhH-h-HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc--cccHHHHHH
Confidence            467888899999988777766554432 2 344667788888999999999999998888876655442  467888887


Q ss_pred             cCC--CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-----c-ChHhHHHhhH
Q 016814           84 LRD--NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-----L-GKDATIEQLL  155 (382)
Q Consensus        84 l~d--~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-----~-~~~~~~~~l~  155 (382)
                      +.+  ++|.. ...++.++.+...-+.  .-.+++|.+.+++......  +..-+++..+...     . +.....+..+
T Consensus       227 lttSsNNWmL-IKiiKLF~aLtplEPR--LgKKLieplt~li~sT~Am--SLlYECvNTVVa~s~s~g~~d~~asiqLCv  301 (877)
T KOG1059|consen  227 LVTSSNNWVL-IKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAM--SLLYECVNTVVAVSMSSGMSDHSASIQLCV  301 (877)
T ss_pred             HhccCCCeeh-HHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHH--HHHHHHHHHheeehhccCCCCcHHHHHHHH
Confidence            754  34542 2345555555432221  1235677777776554321  1222233322221     1 1222345666


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----------
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----------  225 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----------  225 (382)
                      .-+..++.|.+++++--.+-+++.+.+..+.  ..+.....+..++.|.+..+|..++..+..+...-.-          
T Consensus       302 qKLr~fiedsDqNLKYlgLlam~KI~ktHp~--~Vqa~kdlIlrcL~DkD~SIRlrALdLl~gmVskkNl~eIVk~LM~~  379 (877)
T KOG1059|consen  302 QKLRIFIEDSDQNLKYLGLLAMSKILKTHPK--AVQAHKDLILRCLDDKDESIRLRALDLLYGMVSKKNLMEIVKTLMKH  379 (877)
T ss_pred             HHHhhhhhcCCccHHHHHHHHHHHHhhhCHH--HHHHhHHHHHHHhccCCchhHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            7778888899999999998888888876542  2255667788888888888888888776655432111          


Q ss_pred             ------hhhHHHHHHHHHHHhccchhHHHHHH---HHHHHHHHHHhCh-----------------HHHHhhhHHHHHhhh
Q 016814          226 ------GFFDDKLGALCMQWLQDKVYSIRDAA---ANNLKRLAEEFGP-----------------EWAMQHITPQVLEMI  279 (382)
Q Consensus       226 ------~~~~~~l~~~l~~~l~d~~~~vr~~a---~~~l~~~~~~~~~-----------------~~~~~~l~~~l~~~l  279 (382)
                            ..+.+.++..+...+.-.+...-..-   +..+..++...|.                 +..+...+..+..++
T Consensus       380 ~~~ae~t~yrdell~~II~iCS~snY~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll  459 (877)
T KOG1059|consen  380 VEKAEGTNYRDELLTRIISICSQSNYQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALL  459 (877)
T ss_pred             HHhccchhHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHH
Confidence                  12223333333332221111110000   1112222211111                 011122222233333


Q ss_pred             cCc-----------chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhh----H-
Q 016814          280 NNP-----------HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVD----Q-  342 (382)
Q Consensus       280 ~~~-----------~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~----~-  342 (382)
                      .|+           -+.+-.+|++++|.+++.....   ..++..+++--.+-- ..+...-++++..+...+-    + 
T Consensus       460 ~~~~~~~s~q~n~~l~eVL~AaaWi~GEyse~ven~---~~~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~  536 (877)
T KOG1059|consen  460 DDPLLAGSAQINSQLCEVLYAAAWILGEYSEFVENP---NDTLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEET  536 (877)
T ss_pred             hchhhccchhhccchhHHHHHHHHHHHHHHHHhhCH---HHHHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            322           2567778889998888665432   223333333222211 2355555555555443321    1 


Q ss_pred             ------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          343 ------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       343 ------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                            ......++..|.++....+-+|+..|..++.-+
T Consensus       537 ~~~e~~~sL~~~i~~~l~qf~~s~d~EvQERA~~~~~li  575 (877)
T KOG1059|consen  537 KDFEGIVSLVNLILSFLEQFSGSSDLEVQERASEVLELI  575 (877)
T ss_pred             cchhHHHHHHHHHHHHhhcccCccchhHHHHHHHHHHHH
Confidence                  123467777788888888999999876666544

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=2.6e-06  Score=80.39  Aligned_cols=129  Identities=18%  Similarity=0.088  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--------CcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHH
Q 016814          249 DAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--------NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVI  315 (382)
Q Consensus       249 ~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--------~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~  315 (382)
                      .+|...+..++++-|++.+.+ +++.+.+.++        ..+++.+..|+..++.+++.+..+     .+...+++.++
T Consensus       390 ~Aa~~~l~~~~~KR~ke~l~k-~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf  468 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGKETLPK-ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF  468 (1010)
T ss_pred             HHHHHHHHHHHHhcchhhhhh-HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence            457777888888777765543 6666666554        345788999999999998776543     23344567888


Q ss_pred             hhccCCCccHHHHHHHHHHHHh-hhhhHHHHHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHH
Q 016814          316 NASKDRVPNIKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       316 ~~l~d~~~~vR~~a~~~l~~i~-~~~~~~~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~  378 (382)
                      ..++++.--.|..|+..++.++ ..+..+.....++....+++. |++-.||..|+-|++.+...
T Consensus       469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~  533 (1010)
T KOG1991|consen  469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISN  533 (1010)
T ss_pred             HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhc
Confidence            8899988889999999999998 567766667777777777554 99999999999999988653

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=99.06  E-value=2.8e-06  Score=83.43  Aligned_cols=361  Identities=13%  Similarity=0.091  Sum_probs=202.9

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      |-..++++...+|..|++++..++..=+.--..+.+...+..-+.|.+..||.+|++.+|...-..+  ....++...+.
T Consensus       821 Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~--e~~~qyY~~i~  898 (1692)
T KOG1020|consen  821 ILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIP--ELIFQYYDQII  898 (1692)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccH--HHHHHHHHHHH
Confidence            3345678889999999999999988544434455566667777889999999999999998764332  22345677788


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccC--h----------
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLG--K----------  147 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~--~----------  147 (382)
                      +...|+...||+.+++.+..++...+.-.....+.-.+..-.+|+...|...+.+.+..+.  +.-+  .          
T Consensus       899 erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~~~~kI~~  978 (1692)
T KOG1020|consen  899 ERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPAKARKISL  978 (1692)
T ss_pred             hhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHHHHHhhHH
Confidence            8889999999999999999998866544333344444445556666667666666666542  0000  0          


Q ss_pred             ------------HhHHHhhHHHH-HHhh---------------------------------------cCCChHHHH-HHH
Q 016814          148 ------------DATIEQLLPIF-LSLL---------------------------------------KDEFPDVRL-NII  174 (382)
Q Consensus       148 ------------~~~~~~l~~~l-~~~l---------------------------------------~d~~~~vr~-~~~  174 (382)
                                  ..+.++++..+ ....                                       +++...+|. +++
T Consensus       979 ~~~vv~~~~d~~~~~~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~~~~~~~~l 1058 (1692)
T KOG1020|consen  979 EVDVVMSQVDLMNDWLEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEESEVRLLAYL 1058 (1692)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccchhHHHHHH
Confidence                        00111111111 1100                                       011111111 122


Q ss_pred             HhhHHhhhhhch---hhHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhh--chhhhHHHHHHHHHHHhccchhHHH
Q 016814          175 SKLDQVNQVIGI---DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL--GVGFFDDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       175 ~~l~~~~~~~~~---~~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~--~~~~~~~~l~~~l~~~l~d~~~~vr  248 (382)
                      ..|..++..-+.   ......+.|.+..-+.. ...++-..++..+......+  .++.|...+-..+.+.+-......-
T Consensus      1059 stL~~FskirP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~i~k~g~a~V 1138 (1692)
T KOG1020|consen 1059 STLFVFSKIRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKRIVKMGMATV 1138 (1692)
T ss_pred             HHHHHHHhcCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHhcchHHH
Confidence            222222211100   01112233333322111 11233333444444333322  2344445555556665555566666


Q ss_pred             HHHHHHHHHHHHHhChHH-HHhhhHHHHHhhh---c----Cc----chHHHHHHHHHHHHhccccC--------hh----
Q 016814          249 DAAANNLKRLAEEFGPEW-AMQHITPQVLEMI---N----NP----HYLYRMTILRAISLLAPVMG--------SE----  304 (382)
Q Consensus       249 ~~a~~~l~~~~~~~~~~~-~~~~l~~~l~~~l---~----~~----~~~~r~~a~~~l~~l~~~~~--------~~----  304 (382)
                      ..++.+++.++....... ....++..+...+   +    +.    +...-...+.+++.+++++.        ..    
T Consensus      1139 ~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~~~~~ 1218 (1692)
T KOG1020|consen 1139 VEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKTFLQE 1218 (1692)
T ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCccchhh
Confidence            777888888887643221 1222222222222   1    11    22344556777888876432        11    


Q ss_pred             --hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccH
Q 016814          305 --ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDV  364 (382)
Q Consensus       305 --~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~v  364 (382)
                        ...+.++..+..+.++....+|..|+.+||.++-....=.+...+.-.+.+.+.|...++
T Consensus      1219 ~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~ci~hp~l~~~~~v~nly~~ila~~n~~~ 1280 (1692)
T KOG1020|consen 1219 GETLKEKVLILLMYFSKDKDGELRRKALINLGFICIQHPSLFTSREVLNLYDEILADDNSDI 1280 (1692)
T ss_pred             hhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCchhhhhHHHHHHHHHHHhhhcccH
Confidence              245667777777788888999999999999998765544556677777777666544443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=4.2e-07  Score=86.21  Aligned_cols=338  Identities=15%  Similarity=0.107  Sum_probs=201.9

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhh-CHHHH
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRIL-NPELA  111 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~-~~~~~  111 (382)
                      .+.++..+.+.++|.+..||+.+++.++.+...++.+. ..+++...+++++-- ++..-..++-+|+.++..- -....
T Consensus       339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L-ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps~  417 (1133)
T KOG1943|consen  339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL-ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPSL  417 (1133)
T ss_pred             HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH-HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchHH
Confidence            34566777788899999999999999999999888543 244555555543321 2344458888898887642 22223


Q ss_pred             HHhhhHhhhhhcC--------CCchHHHHHHHHHHHhhccccChHhHH---HhhHH-HHHHhhcCCChHHHHHHHHhhHH
Q 016814          112 IQHILPCVKELSS--------DSSQHVRSALASVIMGMAPLLGKDATI---EQLLP-IFLSLLKDEFPDVRLNIISKLDQ  179 (382)
Q Consensus       112 ~~~il~~l~~~~~--------d~~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~~-~l~~~l~d~~~~vr~~~~~~l~~  179 (382)
                      ...++|.+.+.+.        .....||.+++..+..++....+....   +.+.+ .+...+=|.+-++|+++..++-.
T Consensus       418 l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAAlqE  497 (1133)
T KOG1943|consen  418 LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAALQE  497 (1133)
T ss_pred             HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHHHHH
Confidence            4567788877553        234589999999999999877655332   22332 23344668899999999888766


Q ss_pred             hhhhh-----chh-------------------------hHhhhHHHHHHHHhc----CCCchHHHHHHHHhHHHHhhhch
Q 016814          180 VNQVI-----GID-------------------------LLSQSLLPAIVELAE----DRHWRVRLAIIEYIPLLASQLGV  225 (382)
Q Consensus       180 ~~~~~-----~~~-------------------------~~~~~llp~l~~~~~----d~~~~vr~~~~~~l~~l~~~~~~  225 (382)
                      ...-.     |.+                         .+....-|.+..++.    +-+..+|..++.++..+.... +
T Consensus       498 ~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~-p  576 (1133)
T KOG1943|consen  498 NVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTE-P  576 (1133)
T ss_pred             HhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhh-H
Confidence            43221     111                         111123334444433    334468999999999976543 4


Q ss_pred             hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-H--------HH---HhhhHHHHHhhhcCcc--hHHHHHHH
Q 016814          226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-E--------WA---MQHITPQVLEMINNPH--YLYRMTIL  291 (382)
Q Consensus       226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~--------~~---~~~l~~~l~~~l~~~~--~~~r~~a~  291 (382)
                      +.+.+..+|.+.......+...|.....+.+.++..+.. +        .-   ..+++|.+....-.+.  .-.|.+.+
T Consensus       577 k~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg~~~lmr~~~~  656 (1133)
T KOG1943|consen  577 KYLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRGQGTLMRQATL  656 (1133)
T ss_pred             HhhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccchHHHHHHHHH
Confidence            444555666666666677888888888888888765422 1        00   0112333333222222  45666777


Q ss_pred             HHHHHhccccC---hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHH-HhHHHHHHHhcCCCCccHH
Q 016814          292 RAISLLAPVMG---SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVDVR  365 (382)
Q Consensus       292 ~~l~~l~~~~~---~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~-~~i~~~l~~l~~d~~~~vr  365 (382)
                      .++..+.-.-.   .+.+.+...-.+.+.+.+++ .+|..+..+++.+...+-  ++... ..+...+..+.+..+..+|
T Consensus       657 ~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~~d~~~~~~li~~~ls~~~~~~~~~~r  735 (1133)
T KOG1943|consen  657 KFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVKADEGEEAPLITRYLSRLTKCSEERIR  735 (1133)
T ss_pred             HHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHhcCchhhhHHHHHHHHHhcCchHHHHH
Confidence            77766643222   12233333444555566666 899999999998876542  11111 2333444444444455566


Q ss_pred             hHHHHHHHH
Q 016814          366 FFATQAIQS  374 (382)
Q Consensus       366 ~~a~~al~~  374 (382)
                      ....-+++.
T Consensus       736 ~g~~lal~~  744 (1133)
T KOG1943|consen  736 RGLILALGV  744 (1133)
T ss_pred             HHHHHHHcc
Confidence            555555443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.04  E-value=5.6e-06  Score=79.72  Aligned_cols=335  Identities=13%  Similarity=0.164  Sum_probs=222.5

Q ss_pred             chHHHHHHHHHHHHHHhccCh-----------hhhhhhhhhhhhhhccCC------CHHHHHHHHHHHH-HHHHHhCCcc
Q 016814           10 QDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDK------SWRVRYMVANQLY-ELCEAVGPEP   71 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~~~d~------~~~vR~~a~~~l~-~l~~~~~~~~   71 (382)
                      .+..|.....+|..++....+           .....-++|.+.......      ....|...+..+. ...+.. ...
T Consensus       530 ~~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~i~~~~~~~t-~~d  608 (1176)
T KOG1248|consen  530 RPELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEIIRVDYFTVT-PTD  608 (1176)
T ss_pred             chHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHHHHHHHhhcc-cHH
Confidence            347787777777777775411           112233566666554322      2344444444444 222221 222


Q ss_pred             cccchHHHHHHhcCCCcHHH----HHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814           72 TRMDLVPAYVRLLRDNEAEV----RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        72 ~~~~ll~~l~~~l~d~~~~V----R~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      ....+...+.+...+.+..+    +...+..+..++...+.+.+.. +....-..-+..+..++..+.+.|..+...-..
T Consensus       609 v~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~vs~-l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s~  687 (1176)
T KOG1248|consen  609 VVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQVSK-LFTVDPEFENSSSTKVQKKAYRLLEELSSSPSG  687 (1176)
T ss_pred             HHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchhHHH-HHHhhHHhhccccHHHHHHHHHHHHHHhcCCch
Confidence            22345555566666654333    3334444444455444444433 333333444556889999999999999876221


Q ss_pred             ----HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh--HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH-
Q 016814          148 ----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA-  220 (382)
Q Consensus       148 ----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~--~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~-  220 (382)
                          +...+.+...+.+-+++.+...|...++++..+.+..+.+.  +....+|.+.-..++.|..-|+.+..+|..++ 
T Consensus       688 ~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~  767 (1176)
T KOG1248|consen  688 EGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKARRNAFALLVFIGA  767 (1176)
T ss_pred             hhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHHhhHHHHHHHHHH
Confidence                12345666777777778888899999999999988887543  23445555544558888888999888888777 


Q ss_pred             -hhh---chhh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814          221 -SQL---GVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTI  290 (382)
Q Consensus       221 -~~~---~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a  290 (382)
                       ...   |.+.   ..+.+++.+...+......++...+-+++.+...++.   +.+...++..+.-++...+..++.+|
T Consensus       768 i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaA  847 (1176)
T KOG1248|consen  768 IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAA  847 (1176)
T ss_pred             HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence             222   3222   3456677777666666666766667777777766543   45677888899999999999999999


Q ss_pred             HHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHH
Q 016814          291 LRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE  346 (382)
Q Consensus       291 ~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~  346 (382)
                      +.++..++..++..   .+.+.++|.++.+.+|....+|...-..+..+...+|.+.+.
T Consensus       848 I~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe  906 (1176)
T KOG1248|consen  848 IGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE  906 (1176)
T ss_pred             HHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence            99999999888865   567789999999999999999999999999999999977543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.00  E-value=2.7e-06  Score=80.15  Aligned_cols=358  Identities=15%  Similarity=0.179  Sum_probs=217.5

Q ss_pred             chHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814           10 QDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR   85 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~   85 (382)
                      +...| .+...+..++.....  .-....+++.+.++++.++..+...++..|.+++-....  ......++|.+.+++.
T Consensus       263 eqLlr-v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~  341 (708)
T PF05804_consen  263 EQLLR-VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLP  341 (708)
T ss_pred             HHHHH-HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhc
Confidence            33444 566777888775433  223455778888888888999999999999888743222  2233568999999999


Q ss_pred             CCcHHHHHHHHHHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHh
Q 016814           86 DNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSL  161 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~  161 (382)
                      .++..++..++..|.++.-.  .....+...++|.+..+++|++  .|..+...+..++..-...  ......+|.+.++
T Consensus       342 s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~  419 (708)
T PF05804_consen  342 SENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQM  419 (708)
T ss_pred             CCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHH
Confidence            99999999999999998532  2223455679999999998764  5567778888877422111  1225667887776


Q ss_pred             hcC-CChHHHHHHHHhhHHhhhhhc-hhhH-hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHH
Q 016814          162 LKD-EFPDVRLNIISKLDQVNQVIG-IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGAL  235 (382)
Q Consensus       162 l~d-~~~~vr~~~~~~l~~~~~~~~-~~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~  235 (382)
                      +.. +.+.+...++..+..++..-. .+.+ ....++.+... ++..+    ..+++.+..++.+-|+  ..|.+.+.++
T Consensus       420 Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D----~lLlKlIRNiS~h~~~~k~~f~~~i~~L  495 (708)
T PF05804_consen  420 LLENSEEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRD----PLLLKLIRNISQHDGPLKELFVDFIGDL  495 (708)
T ss_pred             HHhCCCccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhccc----HHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence            443 455555544333333322110 0111 11233444333 23222    3345566666655443  2233333333


Q ss_pred             HHHHhcc-chhHHHHHHHHHHHHHHHHh----ChHHHH--hhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccC--hh
Q 016814          236 CMQWLQD-KVYSIRDAAANNLKRLAEEF----GPEWAM--QHITPQVLEMINNPH--YLYRMTILRAISLLAPVMG--SE  304 (382)
Q Consensus       236 l~~~l~d-~~~~vr~~a~~~l~~~~~~~----~~~~~~--~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~--~~  304 (382)
                      + ..+.. .++   +..++++|.++..-    +...+.  ..++|.+.+.+..+.  ..+...++.+++.++..-.  .-
T Consensus       496 ~-~~v~~~~~e---e~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~l  571 (708)
T PF05804_consen  496 A-KIVSSGDSE---EFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPL  571 (708)
T ss_pred             H-HHhhcCCcH---HHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHH
Confidence            3 33433 334   34455555554321    112222  368999998886442  3566666777776653222  22


Q ss_pred             hhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          305 ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       305 ~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      .....+++.++.++++..  .+.-...+.++..+..+-....   ....+...+..+.+|++.+||..+-.++..++..
T Consensus       572 L~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~  650 (708)
T PF05804_consen  572 LAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEY  650 (708)
T ss_pred             HHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            234567788888776554  4577777778877776533322   1256778888899999999999999999988764

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.98  E-value=1.4e-06  Score=79.62  Aligned_cols=352  Identities=13%  Similarity=0.150  Sum_probs=209.3

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhc
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL   84 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l   84 (382)
                      +++++..+|-..++.+..+    ...+..+.++|.+.++++..+..||+.|+-++..+-..+..- ...++++..+  +.
T Consensus       108 LQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~~L~pDapeLi~~f--L~  181 (948)
T KOG1058|consen  108 LQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEHLIPDAPELIESF--LL  181 (948)
T ss_pred             ccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhhhcCChHHHHHHH--HH
Confidence            6788999998888877654    445667779999999999999999999999888776653221 1112344444  33


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD  164 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  164 (382)
                      .+.++..+..|.-.|..    .+++...+.+...+.+ +.+-++......++.+...+..-+.  .....+..+..++..
T Consensus       182 ~e~DpsCkRNAFi~L~~----~D~ErAl~Yl~~~idq-i~~~~~~LqlViVE~Irkv~~~~p~--~~~~~i~~i~~lL~s  254 (948)
T KOG1058|consen  182 TEQDPSCKRNAFLMLFT----TDPERALNYLLSNIDQ-IPSFNDSLQLVIVELIRKVCLANPA--EKARYIRCIYNLLSS  254 (948)
T ss_pred             hccCchhHHHHHHHHHh----cCHHHHHHHHHhhHhh-ccCccHHHHHHHHHHHHHHHhcCHH--HhhHHHHHHHHHHhc
Confidence            45566655555555443    3444333222222221 2233445556666666666652221  235667788888888


Q ss_pred             CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc
Q 016814          165 EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK  243 (382)
Q Consensus       165 ~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~  243 (382)
                      +++.|+-.++-++..+...  +..+ ..--..+..++ +.++.+++.-....+..+. ......+. .+.--+...+..+
T Consensus       255 tssaV~fEaa~tlv~lS~~--p~al-k~Aa~~~i~l~~kesdnnvklIvldrl~~l~-~~~~~il~-~l~mDvLrvLss~  329 (948)
T KOG1058|consen  255 TSSAVIFEAAGTLVTLSND--PTAL-KAAASTYIDLLVKESDNNVKLIVLDRLSELK-ALHEKILQ-GLIMDVLRVLSSP  329 (948)
T ss_pred             CCchhhhhhcceEEEccCC--HHHH-HHHHHHHHHHHHhccCcchhhhhHHHHHHHh-hhhHHHHH-HHHHHHHHHcCcc
Confidence            8999998888777666532  1111 11112222222 3445566666666666655 12222333 3433456778899


Q ss_pred             hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh---cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC
Q 016814          244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD  320 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d  320 (382)
                      +-+||..++...-.++.....+.....+-..+...-   .+.+...|+.-+..+...+-.++.  +...++|.++.++.|
T Consensus       330 dldvr~Ktldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~--~aatvV~~ll~fisD  407 (948)
T KOG1058|consen  330 DLDVRSKTLDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE--VAATVVSLLLDFISD  407 (948)
T ss_pred             cccHHHHHHHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH--HHHHHHHHHHHHhcc
Confidence            999999999888777765443332222222222211   234566788888888887766654  678899999999999


Q ss_pred             CCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh-cCCCCccHHhHHHHHHHHHHHHh
Q 016814          321 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL-TEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       321 ~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                      .|+..-...+..+....+.+++  ....++..+... -.=...++-..|++.++......
T Consensus       408 ~N~~aas~vl~FvrE~iek~p~--Lr~~ii~~l~~~~~~irS~ki~rgalwi~GeYce~~  465 (948)
T KOG1058|consen  408 SNEAAASDVLMFVREAIEKFPN--LRASIIEKLLETFPQIRSSKICRGALWILGEYCEGL  465 (948)
T ss_pred             CCHHHHHHHHHHHHHHHHhCch--HHHHHHHHHHHhhhhhcccccchhHHHHHHHHHhhh
Confidence            9987776666666666665542  122233333322 22234555566666666555443

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=1.1e-05  Score=77.73  Aligned_cols=344  Identities=13%  Similarity=0.127  Sum_probs=226.9

Q ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-----------cccccchHHHHHHhcCCCc------HHHHHHHHHH
Q 016814           36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-----------EPTRMDLVPAYVRLLRDNE------AEVRIAAAGK   98 (382)
Q Consensus        36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~l~d~~------~~VR~~a~~~   98 (382)
                      .+-|.+...+.-. +..|...|..|..+.+...+           ..+....+|.+++....+.      ...|...+..
T Consensus       518 ~la~~l~~al~~~-~elr~~Ic~sL~~Lv~~n~~~~~a~e~~e~~s~~AknfL~~lfn~ytq~~~~~~~~l~~~~~~L~~  596 (1176)
T KOG1248|consen  518 DLAPILGAALLKR-PELRETICNSLRMLVEQNKPSSDAAENKEVLSNDAKNFLPRLFNVYTQTVAAGRKILASRSTVLEI  596 (1176)
T ss_pred             HHHHHHHHHHhcc-hHhHHHHHHHHHHHHHcCCCcchHHHHHHHHhhhhhHHHHHHHHHhcCCCccccccHHHHHHHHHH
Confidence            3555555444433 38999999999988876411           1122347888887665432      3455555555


Q ss_pred             HHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHH----HHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHH
Q 016814           99 VTKFCRILNPELAIQHILPCVKELSSDSSQHVR----SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII  174 (382)
Q Consensus        99 l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr----~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~  174 (382)
                      +....-...+..+...+...+.+...|.+..++    ...+..+..++...+.+. ...++.+....-+..+..++..+.
T Consensus       597 i~~~~~~~t~~dv~~~l~~s~~e~as~~~~s~~~~~~~slLdl~~~~a~~~~e~~-vs~l~~v~~~~e~~~~~~vQkK~y  675 (1176)
T KOG1248|consen  597 IRVDYFTVTPTDVVGSLKDSAGELASDLDESVASFKTLSLLDLLIALAPVQTESQ-VSKLFTVDPEFENSSSTKVQKKAY  675 (1176)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhHhccchhhhhhHHHHHHHHHHHhhhccccchh-HHHHHHhhHHhhccccHHHHHHHH
Confidence            552222223333344555666666666654433    333344444444444332 234445555555666889999999


Q ss_pred             HhhHHhhhhhchhhH----hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh--HHHHHHHHHHHhccchhHHH
Q 016814          175 SKLDQVNQVIGIDLL----SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       175 ~~l~~~~~~~~~~~~----~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr  248 (382)
                      ..|..+....+.+.+    ...+...+..-+++.....|...+.++..+.+..+.+..  ....+|-++-.+++.+..-|
T Consensus       676 rlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~Ke~n~~aR  755 (1176)
T KOG1248|consen  676 RLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSLKEVNVKAR  755 (1176)
T ss_pred             HHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccccHHHH
Confidence            999988876322222    234444555555666778899999999999988874332  24455555545589899999


Q ss_pred             HHHHHHHHHHH--HH---hChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc---ChhhhhhhhHHHHHhh
Q 016814          249 DAAANNLKRLA--EE---FGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSEITCSRLLPVVINA  317 (382)
Q Consensus       249 ~~a~~~l~~~~--~~---~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~~~~~~~l~~l~~~  317 (382)
                      +.|..+|-.+.  ..   .|.+.   ..+.+++.+...+......++.+-+-++..+...+   ..+.+...++..+..+
T Consensus       756 ~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~  835 (1176)
T KOG1248|consen  756 RNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLY  835 (1176)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence            99988888887  22   23332   45667788887776666555555455555554332   2345788899999999


Q ss_pred             ccCCCccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          318 SKDRVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       318 l~d~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +...++++|.+|+..+..+...+....   ..+.++|.+..+++|....+|..+-..+..+...+|.
T Consensus       836 L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~  902 (1176)
T KOG1248|consen  836 LASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGA  902 (1176)
T ss_pred             HhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCH
Confidence            999999999999999999998887653   4467899999999999999999999999999888774

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.94  E-value=1.5e-06  Score=79.21  Aligned_cols=221  Identities=16%  Similarity=0.134  Sum_probs=150.7

Q ss_pred             hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH
Q 016814           32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA  111 (382)
Q Consensus        32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~  111 (382)
                      +....+-+-+..+++..-+.+|+-|+-.+..+.-.-++..  ..-+|.+.+-+.|+++.|..+|...+-.+++.-++...
T Consensus       140 dLARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAl--r~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL  217 (877)
T KOG1059|consen  140 DLARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEAL--RPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYL  217 (877)
T ss_pred             hhhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhH--hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccc
Confidence            3445566777778888888899988888888876554432  23588888888999999999988888888877665532


Q ss_pred             HHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHh--hhhhch-
Q 016814          112 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQV--NQVIGI-  186 (382)
Q Consensus       112 ~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~--~~~~~~-  186 (382)
                        .+-|.|.+++. +.+-++-...++.++.+...=++  .-..++|.++++++.... .+--.++..+-..  ....+. 
T Consensus       218 --~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPR--LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~  293 (877)
T KOG1059|consen  218 --QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR--LGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDH  293 (877)
T ss_pred             --cccHHHHHHHhccCCCeehHHHHHHHhhccccCch--hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence              45677777664 34556777777888877753221  235778888888876542 2333333333222  111111 


Q ss_pred             hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       187 ~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                      +...+--+.-+..++.|.++..|.-.+-+++.+++.-....  ..-..++..+|.|.+..+|..|+..+--++.
T Consensus       294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V--qa~kdlIlrcL~DkD~SIRlrALdLl~gmVs  365 (877)
T KOG1059|consen  294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV--QAHKDLILRCLDDKDESIRLRALDLLYGMVS  365 (877)
T ss_pred             HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH--HHhHHHHHHHhccCCchhHHHHHHHHHHHhh
Confidence            12224456777888899999999999999999886443322  2345677889999999999999998877664

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=98.94  E-value=8.8e-06  Score=76.40  Aligned_cols=265  Identities=14%  Similarity=0.106  Sum_probs=131.8

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccc-hHHHHHHhc
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD-LVPAYVRLL   84 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~-ll~~l~~~l   84 (382)
                      ++|++|.+|-.|++.++.+    +...+++.+++.+.++++|+++.||+.|+-++.++-+ ++++.+... ....+..++
T Consensus       101 l~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~-ld~~l~~~~g~~~~l~~l~  175 (757)
T COG5096         101 LQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYR-LDKDLYHELGLIDILKELV  175 (757)
T ss_pred             ccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHh-cCHhhhhcccHHHHHHHHh
Confidence            5677777887777777664    3345666777777777777777888877777776654 333333333 566666677


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHHH--HHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~--~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      .|++|.|..+|+.++..+-........  ....+|.+.-...+. ...++......+.........+  ...+...+.--
T Consensus       176 ~D~dP~Vi~nAl~sl~~i~~e~a~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~le~L~~~~~~~~~s--~~~~~~~~~~~  253 (757)
T COG5096         176 ADSDPIVIANALASLAEIDPELAHGYSLEVILRIPQLDLLSLSVSTEWLLLIILEVLTERVPTTPDS--AEDFEERLSPP  253 (757)
T ss_pred             hCCCchHHHHHHHHHHHhchhhhhhHHHHHHHHhhhccchhhhhhHHHHHHHHHHHHHccCCCCCCc--HHHHHHhccch
Confidence            777777777777777666443111100  011122222111111 1334444444433333222211  11111222222


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH-Hhhhc----------------
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL-ASQLG----------------  224 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l-~~~~~----------------  224 (382)
                      ....++.|-..+++.+..+........+.....|.+..++..+ .......+.....+ .+...                
T Consensus       254 ~~~~n~~vl~~av~~i~~l~~~~~~~~~~~~~~~~l~~Ll~~~-~~~~~~vl~~~~~~~l~~~~k~~~~~~~~f~~~~~~  332 (757)
T COG5096         254 LQHNNAEVLLIAVKVILRLLVFLPSNNLFLISSPPLVTLLAKP-ESLIQYVLRRNIQIDLEVCSKLLDKVKKLFLIEYND  332 (757)
T ss_pred             hhhCcHHHHHHHHHHHHHHhhhhccccHHHhhccHHHHHHcCC-HHHHHHHHHHhhHHHHHhhHHHHHHHhhhhhhhccc
Confidence            2233555555555555555444433333233333343333222 11111111111110 00000                


Q ss_pred             ----------------hhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc
Q 016814          225 ----------------VGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  280 (382)
Q Consensus       225 ----------------~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~  280 (382)
                                      ...-..++++-+.....+  .+.++-..++++|+.+....  +.....++..+++.+.
T Consensus       333 ~i~~~lek~~~~t~l~~~~n~~~~L~e~~~y~~~~~~~~e~v~~~ik~lgd~~sk~--~s~~~~~I~~~lel~~  404 (757)
T COG5096         333 DIYIKLEKLDQLTRLADDQNLSQILLELIYYIAENHIDAEMVSEAIKALGDLASKA--ESSVNDCISELLELLE  404 (757)
T ss_pred             hHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhhhhh--hhhHHHHHHHHHHhcc
Confidence                            000012345555555666  77888888899999988765  3334567777777776

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.92  E-value=9e-09  Score=71.35  Aligned_cols=88  Identities=26%  Similarity=0.351  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc--ccchHHHHHHhcCCCc
Q 016814           13 VRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT--RMDLVPAYVRLLRDNE   88 (382)
Q Consensus        13 vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~--~~~ll~~l~~~l~d~~   88 (382)
                      .|+.++.++..++-.++.  ....+.++|.+..++.|++++||+.++++|.++++..+.+..  ..++++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            477778888877777665  445667888888888999999999999999988887766542  3567888888888888


Q ss_pred             HHHHHHHHHHHHH
Q 016814           89 AEVRIAAAGKVTK  101 (382)
Q Consensus        89 ~~VR~~a~~~l~~  101 (382)
                      +.||.+| +.|-+
T Consensus        82 ~~Vr~~a-~~Ld~   93 (97)
T PF12755_consen   82 ENVRSAA-ELLDR   93 (97)
T ss_pred             hhHHHHH-HHHHH
Confidence            8888876 44443

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=98.91  E-value=9.2e-09  Score=71.29  Aligned_cols=84  Identities=21%  Similarity=0.284  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCc
Q 016814           52 VRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSS  127 (382)
Q Consensus        52 vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~  127 (382)
                      .|+.++-+|..++..++..  .+.+.++|.++.++.|++++||..|+++|.++++..+.+  .+.+.+++.+.+++.|++
T Consensus         2 ~R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    2 YRKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             chhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            4888999999999888875  344679999999999999999999999999999888766  345678888889999999


Q ss_pred             hHHHHHHH
Q 016814          128 QHVRSALA  135 (382)
Q Consensus       128 ~~vr~~a~  135 (382)
                      +.||.++.
T Consensus        82 ~~Vr~~a~   89 (97)
T PF12755_consen   82 ENVRSAAE   89 (97)
T ss_pred             hhHHHHHH
Confidence            99998883

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=98.90  E-value=1.9e-05  Score=71.45  Aligned_cols=333  Identities=16%  Similarity=0.166  Sum_probs=203.2

Q ss_pred             hhhhhhccCCCH---HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-----CCcHHHHHHHHHHHHHHHHhhCHH-
Q 016814           39 PVIVNFSQDKSW---RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-----DNEAEVRIAAAGKVTKFCRILNPE-  109 (382)
Q Consensus        39 ~~l~~~~~d~~~---~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-----d~~~~VR~~a~~~l~~l~~~~~~~-  109 (382)
                      |.+...+.|.+.   .-.+...+.++.++   ........+.+.+.+.+.     ..+...-...+.++..+.+....+ 
T Consensus         2 p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls---~~~~i~~~~~~~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~   78 (415)
T PF12460_consen    2 PALLALLPDSDSSTDSNYERILEALAALS---TSPQILETLSIRLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK   78 (415)
T ss_pred             chHHhhCCCCCCcchhHHHHHHHHHHHHH---CChhHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence            455556655544   34455555555555   333333334444443332     125566677778887776654222 


Q ss_pred             ------HHHH-hhhHhhhhhcC-----CC--chHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc----------CC
Q 016814          110 ------LAIQ-HILPCVKELSS-----DS--SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK----------DE  165 (382)
Q Consensus       110 ------~~~~-~il~~l~~~~~-----d~--~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~----------d~  165 (382)
                            .+.+ .++|.+.+...     +.  ++.+-..+...+..+...++.+... .++..+..+.-          +.
T Consensus        79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~-~~~~~~~~lf~~~~~~~~~~~~~  157 (415)
T PF12460_consen   79 QFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQ-EILDELYSLFLSPKSFSPFQPSS  157 (415)
T ss_pred             ccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHccccccCCCCccc
Confidence                  2222 37777776541     22  3667777777888787777755422 22322222221          11


Q ss_pred             C--hHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814          166 F--PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  239 (382)
Q Consensus       166 ~--~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  239 (382)
                      +  .........-+..+...+.++..   .+.++..+..+ ....++..|..+.+.+..++.++......+.++..+...
T Consensus       158 ~~~~~~~~~~~~l~~~il~~l~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l~~~l~~~~~~  237 (415)
T PF12460_consen  158 STISEQQSRLVILFSAILCSLRKDVSLPDLEELLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDLDEFLDSLLQS  237 (415)
T ss_pred             cccccccccHHHHHHHHHHcCCcccCccCHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhHHHHHHHHHhh
Confidence            1  11222222233333333333211   12355555554 345568999999999999998875554444555555554


Q ss_pred             h-ccchhHHHHHHHHHHHHHHHHh--ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc--------C------
Q 016814          240 L-QDKVYSIRDAAANNLKRLAEEF--GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM--------G------  302 (382)
Q Consensus       240 l-~d~~~~vr~~a~~~l~~~~~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~--------~------  302 (382)
                      . .......|..++..+.-+.+.+  ........++..+.+.+.+  ..+...++.+++.+....        +      
T Consensus       238 ~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklL  315 (415)
T PF12460_consen  238 ISSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLL  315 (415)
T ss_pred             hcccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhH
Confidence            4 4556677777777776666653  1222345577888888887  556777888888775331        1      


Q ss_pred             -hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH---HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          303 -SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV---EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       303 -~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~---~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                       ...++..++|.++...++.+...|...+.+|..+.++++.+.+   ...++|.+.+.++-++.+++..+.+++..+..
T Consensus       316 ykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  316 YKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILE  394 (415)
T ss_pred             HhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence             1235678899999998888878999999999999999887643   36899999998888888999999998887654

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.88  E-value=1.7e-06  Score=79.81  Aligned_cols=95  Identities=22%  Similarity=0.269  Sum_probs=58.4

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhc
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS  123 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~  123 (382)
                      -++..+..+--.|.-+++.++   +++. -..+.|.+.++++.+++.||+.|+.|...+....+.-  .+.+++...+++
T Consensus       115 DL~s~nq~vVglAL~alg~i~---s~Em-ardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l--~e~f~~~~~~lL  188 (866)
T KOG1062|consen  115 DLNSSNQYVVGLALCALGNIC---SPEM-ARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL--VEHFVIAFRKLL  188 (866)
T ss_pred             hccCCCeeehHHHHHHhhccC---CHHH-hHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH--HHHhhHHHHHHH
Confidence            334444444444444444433   2332 2456777777777777777777777777776654432  346677777777


Q ss_pred             CCCchHHHHHHHHHHHhhccc
Q 016814          124 SDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus       124 ~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      .|.+..|-.+.+..+-.+++.
T Consensus       189 ~ek~hGVL~~~l~l~~e~c~~  209 (866)
T KOG1062|consen  189 CEKHHGVLIAGLHLITELCKI  209 (866)
T ss_pred             hhcCCceeeeHHHHHHHHHhc
Confidence            777777777776666666654

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=98.87  E-value=3.2e-07  Score=87.18  Aligned_cols=201  Identities=18%  Similarity=0.223  Sum_probs=164.7

Q ss_pred             cChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 016814           28 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR  104 (382)
Q Consensus        28 ~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~  104 (382)
                      +++.++.+.+-+-+...+.+++|.-|..+++.+..+.+.-+.   ..+...+...+.-...|.+-.|-..++.+|..++.
T Consensus       245 l~~~di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~  324 (815)
T KOG1820|consen  245 LPRVDILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAK  324 (815)
T ss_pred             CchhhhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence            344566667777788888999999999999999998876661   22223355555567789999999999999999999


Q ss_pred             hhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814          105 ILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       105 ~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~  182 (382)
                      .++..  .+...+.|.+.+.+.|....+|..+..++..++...+    ...+.+.+..++++.++..|..+...+.....
T Consensus       325 ~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~  400 (815)
T KOG1820|consen  325 KLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLR  400 (815)
T ss_pred             hcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHh
Confidence            88765  4456788999999999999999999999999987433    46788999999999999999999999998887


Q ss_pred             hhch----hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814          183 VIGI----DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  232 (382)
Q Consensus       183 ~~~~----~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  232 (382)
                      .+++    ......+.|.+....+|.+..||.++.+.+..+...+|.+.+...+
T Consensus       401 ~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L  454 (815)
T KOG1820|consen  401 KLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLL  454 (815)
T ss_pred             hcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            7762    2234788999999999999999999999999999999987765433

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.87  E-value=2.9e-07  Score=84.07  Aligned_cols=232  Identities=17%  Similarity=0.277  Sum_probs=170.4

Q ss_pred             CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CC
Q 016814          126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DR  204 (382)
Q Consensus       126 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~  204 (382)
                      .++.=+....+.|..+...++.......++|.+.+.+.+..  ..-...-.+-.+.+..+...+...++|.+....+ ..
T Consensus       285 kdn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~  362 (700)
T KOG2137|consen  285 KDNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASD  362 (700)
T ss_pred             cCcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCC
Confidence            34455667788888888888888888889988888774421  1111222223344444555666788888888877 55


Q ss_pred             CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-cCcc
Q 016814          205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPH  283 (382)
Q Consensus       205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~~~~  283 (382)
                      +-+++..+++.+..+.+....+.+.+.++|++...++|.+..+++.+++.+..+++.+......+.++|.+.... ...+
T Consensus       363 ~~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~  442 (700)
T KOG2137|consen  363 PKQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTN  442 (700)
T ss_pred             cccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccc
Confidence            667888999999999999999999999999999999999999999999999999999887778888999988764 4556


Q ss_pred             hHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHHHhHHHHHHHhcCCC
Q 016814          284 YLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCLVELTEDP  360 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l~~l~~d~  360 (382)
                      ..++..++.|++.+++.+......++++|.+... +...+.+-....++...+.....  .+...+.++|.+..+...+
T Consensus       443 ~~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~~-~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  443 LYVKVNVLPCLAGLIQRLDKAAVLDELLPILKCI-KTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHh-cCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence            8899999999999998887766666666665544 34457777777776655543322  2445567777776655443

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=98.86  E-value=3.3e-05  Score=76.26  Aligned_cols=339  Identities=16%  Similarity=0.105  Sum_probs=194.8

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  113 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  113 (382)
                      .+..+..+...+..+...+|..|++++..+.+.=+.-.....+...+-..+.|++-.||++|++.+|.++-..+.-  ..
T Consensus       814 fD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~--~~  891 (1692)
T KOG1020|consen  814 FDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL--IF  891 (1692)
T ss_pred             hHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH--HH
Confidence            3445566666778888999999999999998744333334456777777889999999999999999986544322  23


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh----------
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV----------  183 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~----------  183 (382)
                      +.-..+.+-+.|+...||.-+++.+..++...+.=.....+.--+...++|+...+..-+...+..+.=.          
T Consensus       892 qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF~p~~~~~d~~~  971 (1692)
T KOG1020|consen  892 QYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWFTPVPEVNDQPA  971 (1692)
T ss_pred             HHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHhccCCCcccccHH
Confidence            4556677778899999999999999999976653222334444444556777777777777666654211          


Q ss_pred             -----------------hchhhHhhhHHHHHHH----------------------------Hh------------cCCCc
Q 016814          184 -----------------IGIDLLSQSLLPAIVE----------------------------LA------------EDRHW  206 (382)
Q Consensus       184 -----------------~~~~~~~~~llp~l~~----------------------------~~------------~d~~~  206 (382)
                                       ++.+.. +.++-.+..                            ++            .++..
T Consensus       972 ~~~kI~~~~~vv~~~~d~~~~~~-eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~~ 1050 (1692)
T KOG1020|consen  972 KARKISLEVDVVMSQVDLMNDWL-EQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEES 1050 (1692)
T ss_pred             HHHhhHHHHHHHHHHHHHhcChH-HHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhcccc
Confidence                             000111 111111111                            00            00111


Q ss_pred             hHH-HHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc-----hhHHHHHHHHHHHHHHHHhC--hHHHHhhhHHHHHhh
Q 016814          207 RVR-LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-----VYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEM  278 (382)
Q Consensus       207 ~vr-~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-----~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~  278 (382)
                      .+| .+.+..|..++. ..|..+.+..+-.+..+|...     ...+-...+..+..+.....  .+.|...+-..++.+
T Consensus      1051 ~~~~~~~lstL~~Fsk-irP~Llt~khv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~VlPlv~~~sesfL~sLEe~L~~~ 1129 (1692)
T KOG1020|consen 1051 EVRLLAYLSTLFVFSK-IRPQLLTKKHVITLQPYLTSKASTIEEAQFLYYVIQILECVLPLVANPSESFLASLEEDLLKR 1129 (1692)
T ss_pred             hhHHHHHHHHHHHHHh-cCchhccHHHHHHhhhHHhccccchHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH
Confidence            111 122222222222 122222222222333333322     22333344444444443332  244555566666666


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhc-------cCC----CccHHHHHHHHHHHHhhhhhH----
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINAS-------KDR----VPNIKFNVAKVLQSLIPIVDQ----  342 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l-------~d~----~~~vR~~a~~~l~~i~~~~~~----  342 (382)
                      +...+...-..+..|++.++...... .....++..+++.+       .+.    +...=...+.++|.+..++.-    
T Consensus      1130 i~k~g~a~V~~~vsCl~sl~~k~~~~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~ 1209 (1692)
T KOG1020|consen 1130 IVKMGMATVVEAVSCLGSLATKRTDGAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPS 1209 (1692)
T ss_pred             HHhcchHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCcc
Confidence            66666677778888998888753221 12333333333322       122    212334566778888776531    


Q ss_pred             ----------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          343 ----------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       343 ----------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                                ......++-.|.-+..+.+-++|..|..+++.+.
T Consensus      1210 ~~g~~~~~~~~~~~e~v~~lL~~f~k~~~~~lR~~al~~Lg~~c 1253 (1692)
T KOG1020|consen 1210 NDGKTFLQEGETLKEKVLILLMYFSKDKDGELRRKALINLGFIC 1253 (1692)
T ss_pred             CCCccchhhhhhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                      1234677777777788889999999999999775

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.83  E-value=7.6e-07  Score=70.38  Aligned_cols=112  Identities=21%  Similarity=0.182  Sum_probs=88.8

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      +|.||..++.+++.++...+.  ..+..+|.+...+.|+++.||+.++..+..+... +--..+..++..+..++.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            588999999999999998864  4566788899999999999999999999998753 2122234566888889999999


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC
Q 016814           90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  124 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~  124 (382)
                      .||..|...+..+.....++.+.+.+.+.+..+-+
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~  112 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYNNFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhC
Confidence            99999999999998876666666555555555443

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=98.82  E-value=6e-07  Score=82.11  Aligned_cols=232  Identities=15%  Similarity=0.223  Sum_probs=176.1

Q ss_pred             cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc-CCC
Q 016814           88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK-DEF  166 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-d~~  166 (382)
                      ++.-+...++.|..+...++.....++++|.+.+.+.+..  .--...-.+-.|++......+...++|.+...++ ...
T Consensus       286 dn~qKs~Flk~Ls~~ip~fp~rv~~~kiLP~L~~el~n~~--~vp~~LP~v~~i~~~~s~~~~~~~~~p~l~pi~~~~~~  363 (700)
T KOG2137|consen  286 DNSQKSSFLKGLSKLIPTFPARVLFQKILPTLVAELVNTK--MVPIVLPLVLLIAEGLSQNEFGPKMLPALKPIYSASDP  363 (700)
T ss_pred             CcHHHHHHHHHHHHhhccCCHHHHHHhhhhHHHHHhcccc--ccccccchhhhhhhccchhhhhhhhhHHHHHHhccCCc
Confidence            4445666788899999999998888899999998774432  1112223333445555555567788888888877 446


Q ss_pred             hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH-hccchh
Q 016814          167 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVY  245 (382)
Q Consensus       167 ~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~  245 (382)
                      ..++.-.++.+..+.+...++.+.+.++|.+...+++.+..++..+++.++.+++.++.....+.++|.+..+ ++..+.
T Consensus       364 ~~~~l~i~e~mdlL~~Kt~~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~  443 (700)
T KOG2137|consen  364 KQALLFILENMDLLKEKTPPEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNL  443 (700)
T ss_pred             ccchhhHHhhHHHHHhhCChHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccch
Confidence            7788888899999999999999989999999999999999999999999999999999888888999999875 456789


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc--cccChhhhhhhhHHHHHhhccCCC
Q 016814          246 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA--PVMGSEITCSRLLPVVINASKDRV  322 (382)
Q Consensus       246 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~~~l~~l~~~l~d~~  322 (382)
                      .|+..++-+++.+++.+..-...+.+.|.+.. .+..++.+-.....+...+.  ...|.+...++++|.++.+...+.
T Consensus       444 ~vkvn~L~c~~~l~q~lD~~~v~d~~lpi~~~-~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~  521 (700)
T KOG2137|consen  444 YVKVNVLPCLAGLIQRLDKAAVLDELLPILKC-IKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS  521 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence            99999999999999887665555656555544 44455566566666555543  233346678899999888876654

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.79  E-value=2.2e-08  Score=69.36  Aligned_cols=85  Identities=29%  Similarity=0.406  Sum_probs=53.3

Q ss_pred             hhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814           39 PVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  117 (382)
Q Consensus        39 ~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  117 (382)
                      |.+.+.+ +|+++.+|..++..++.+.        ....+|.+.++++|+++.||.+++.+|+.+..        +..++
T Consensus         2 ~~L~~~l~~~~~~~vr~~a~~~L~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------~~~~~   65 (88)
T PF13646_consen    2 PALLQLLQNDPDPQVRAEAARALGELG--------DPEAIPALIELLKDEDPMVRRAAARALGRIGD--------PEAIP   65 (88)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHHHHCCT--------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------HHTHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHcC--------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHH
Confidence            3444444 6777777777777777332        13467777777777777777777777776532        34556


Q ss_pred             hhhhhcCC-CchHHHHHHHHHHH
Q 016814          118 CVKELSSD-SSQHVRSALASVIM  139 (382)
Q Consensus       118 ~l~~~~~d-~~~~vr~~a~~~l~  139 (382)
                      .+.+++.| ++..||..++.+|+
T Consensus        66 ~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   66 ALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCcHHHHHHHHhhcC
Confidence            66665554 34456777776654

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.79  E-value=1.9e-05  Score=69.16  Aligned_cols=256  Identities=16%  Similarity=0.116  Sum_probs=159.7

Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH--HHhhH-HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHh
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLL-PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS  190 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~--~~~l~-~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~  190 (382)
                      .++-.+-.-..|++..+|..++..++..+...+.+..  .+.++ -++..+..+.+.+|.-.+++.+..+.+....+.+.
T Consensus       258 s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~  337 (533)
T KOG2032|consen  258 SVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLE  337 (533)
T ss_pred             HHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchh
Confidence            3444444556789999999999999999987664432  23444 45555666677999999999999888776665554


Q ss_pred             hhHHHH---HHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHH---HHhccchhHHHHHHHHHHHHHHHH
Q 016814          191 QSLLPA---IVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCM---QWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       191 ~~llp~---l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~---~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                      ..+++.   ++++..+.+...|.++...++.++...|   ++.|.+++...+.   --++|+++.|-.+.    +.....
T Consensus       338 ~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~AC----r~~~~~  413 (533)
T KOG2032|consen  338 SYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARAC----RSELRT  413 (533)
T ss_pred             hhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHH----HHHHHh
Confidence            444444   5667889999999999999999987665   3455544443222   23678888774432    223333


Q ss_pred             hChHHHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          262 FGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       262 ~~~~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      +++...++.+.-.+-+.+ |... +.+.-.-.++.++......  ..-........+++..-+.+|..+...-+....+.
T Consensus       414 c~p~l~rke~~~~~q~~l-d~~~~~~q~Fyn~~c~~L~~i~~d--~l~~~~t~~~~~f~sswe~vr~aavl~t~~~vd~l  490 (533)
T KOG2032|consen  414 CYPNLVRKELYHLFQESL-DTDMARFQAFYNQWCIQLNHIHPD--ILMLLLTEDQHIFSSSWEQVREAAVLKTTRSVDSL  490 (533)
T ss_pred             cCchhHHHHHHHHHhhhh-HHhHHHHHHHHHHHHHHHhhhCHH--HHHHHHHhchhheecchHHHHHHHHHHHHHHHHHh
Confidence            344333333333332222 2221 2222222223333322111  11222233344566666789988888877777666


Q ss_pred             hHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          341 DQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       341 ~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ..+.    ....+...+..+-.||-++|+..|.+|++.+.
T Consensus       491 ~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~  530 (533)
T KOG2032|consen  491 VRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLS  530 (533)
T ss_pred             HHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHh
Confidence            5543    23567777777889999999999999998764

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=98.77  E-value=5.1e-08  Score=67.55  Aligned_cols=86  Identities=28%  Similarity=0.405  Sum_probs=60.7

Q ss_pred             HHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814           77 VPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  155 (382)
Q Consensus        77 l~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  155 (382)
                      +|.+++.+ +|+++.||..++.+|+.+.    .    ...+|.+.++++|+++.||..++.+++.+.        .+..+
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----~----~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~--------~~~~~   64 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELG----D----PEAIPALIELLKDEDPMVRRAAARALGRIG--------DPEAI   64 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCT----H----HHHHHHHHHHHTSSSHHHHHHHHHHHHCCH--------HHHTH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcC----C----HhHHHHHHHHHcCCCHHHHHHHHHHHHHhC--------CHHHH
Confidence            45666666 7788888888888887442    2    245777777778888888888888888773        24566


Q ss_pred             HHHHHhhcC-CChHHHHHHHHhhH
Q 016814          156 PIFLSLLKD-EFPDVRLNIISKLD  178 (382)
Q Consensus       156 ~~l~~~l~d-~~~~vr~~~~~~l~  178 (382)
                      +.+.+++.+ ++..||..++.+|+
T Consensus        65 ~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   65 PALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcHHHHHHHHhhcC
Confidence            777776655 34566777777764

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.75  E-value=7.1e-06  Score=74.62  Aligned_cols=287  Identities=14%  Similarity=0.120  Sum_probs=155.8

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE   88 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~   88 (382)
                      .++.+++.|++.|....++++.  ..+.-+..+..+++|.+..||..|++.|..+|+.-+  .....+...+.+++..++
T Consensus        34 g~~k~K~Laaq~I~kffk~FP~--l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaDvL~QlL~tdd  109 (556)
T PF05918_consen   34 GSPKEKRLAAQFIPKFFKHFPD--LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVADVLVQLLQTDD  109 (556)
T ss_dssp             S-HHHHHHHHHHHHHHHCC-GG--GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHHHHHHHTT---
T ss_pred             CCHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHHHHHHHHhccc
Confidence            3578899999999999998864  456778888999999999999999999999997532  233568899999999888


Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh------HhHHHhhHHHHHHhh
Q 016814           89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQLLPIFLSLL  162 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~l~~~l~~~l  162 (382)
                      +..+.++-++|..+.+.-+.. ....++..+..- ...+..+|+.+++.+..-...++.      +...+.++..+.+.+
T Consensus       110 ~~E~~~v~~sL~~ll~~d~k~-tL~~lf~~i~~~-~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL  187 (556)
T PF05918_consen  110 PVELDAVKNSLMSLLKQDPKG-TLTGLFSQIESS-KSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVL  187 (556)
T ss_dssp             HHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHH----HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhcCcHH-HHHHHHHHHHhc-ccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHH
Confidence            888888888888876643332 222333332211 234567999999887543332321      334567778888888


Q ss_pred             cCCChHHHHHHHHhhHHhhhh--hchhhHhhhHHHHHHHHhc-CC-----CchHHHHHHHHhHHHHhh----hchhhhHH
Q 016814          163 KDEFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAE-DR-----HWRVRLAIIEYIPLLASQ----LGVGFFDD  230 (382)
Q Consensus       163 ~d~~~~vr~~~~~~l~~~~~~--~~~~~~~~~llp~l~~~~~-d~-----~~~vr~~~~~~l~~l~~~----~~~~~~~~  230 (382)
                      .|-..+--..++..|..+-.+  ..+..-.+.+++.+.+... |.     +...-..++.++..-...    .....|..
T Consensus       188 ~DVTaeEF~l~m~lL~~lk~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v~Sskfv~  267 (556)
T PF05918_consen  188 QDVTAEEFELFMSLLKSLKIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGVSSSKFVN  267 (556)
T ss_dssp             TT--HHHHHHHHHHHHTSGG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB--HHHHH
T ss_pred             HhccHHHHHHHHHHHHhCccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCCChHHHHH
Confidence            884432222223333222221  1111122566776665431 11     122222333433332222    22233333


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--------c--chHHHHHHHHHHHHhccc
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--------P--HYLYRMTILRAISLLAPV  300 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--------~--~~~~r~~a~~~l~~l~~~  300 (382)
                      .+..-++.-+.+-....|...++.++.++...+... ...++|.+.+.|..        +  +...-++.+.++..++..
T Consensus       268 y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L~~ymP~~~~~~~l~fs~vEcLL~afh~La~k  346 (556)
T PF05918_consen  268 YMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLLKKYMPSKKTEPKLQFSYVECLLYAFHQLARK  346 (556)
T ss_dssp             HHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHHHTTS----------HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHHHhCCCCCCCCcccchHhhHHHHHHHHHhhh
Confidence            333333334444466778888999999998888644 34455555554421        1  245566777777777655


Q ss_pred             cC
Q 016814          301 MG  302 (382)
Q Consensus       301 ~~  302 (382)
                      ..
T Consensus       347 ~p  348 (556)
T PF05918_consen  347 SP  348 (556)
T ss_dssp             -T
T ss_pred             Cc
Confidence            44

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=98.74  E-value=1.8e-06  Score=68.28  Aligned_cols=112  Identities=21%  Similarity=0.210  Sum_probs=82.2

Q ss_pred             ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchh
Q 016814          166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVY  245 (382)
Q Consensus       166 ~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~  245 (382)
                      ++.+|.+++.+++.++..++  .+.+..+|.+...+.|+++.||..++..+..+... +.-.+...++..+...+.|+++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~--~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~-d~ik~k~~l~~~~l~~l~D~~~   77 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP--NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE-DMIKVKGQLFSRILKLLVDENP   77 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc--HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc-CceeehhhhhHHHHHHHcCCCH
Confidence            46788899999988877664  33477888888889999999999999988888753 3333345666667778899999


Q ss_pred             HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC
Q 016814          246 SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN  281 (382)
Q Consensus       246 ~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~  281 (382)
                      +||..|...+..+....+++.+.. .+|.++..+++
T Consensus        78 ~Ir~~A~~~~~e~~~~~~~~~i~~-~~~e~i~~l~~  112 (178)
T PF12717_consen   78 EIRSLARSFFSELLKKRNPNIIYN-NFPELISSLNN  112 (178)
T ss_pred             HHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHhC
Confidence            999999999999888755554444 44444444443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.73  E-value=2.8e-05  Score=71.51  Aligned_cols=355  Identities=14%  Similarity=0.114  Sum_probs=197.2

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccc---hHHHHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD---LVPAYVR   82 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~---ll~~l~~   82 (382)
                      +...+..++-.|+.-+..+.-  ..+.+.+.++.++.-.+...+..+++...-.+.-+-+.-++....++   +...+-+
T Consensus        29 Lek~~~~~KIeamK~ii~~ml--nGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~Rk  106 (948)
T KOG1058|consen   29 LEKGDDEVKIEAMKKIIALML--NGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRK  106 (948)
T ss_pred             HhcCChHHHHHHHHHHHHHHH--cCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHHhh
Confidence            455677788888776654433  34455555666666666777777777666655533333232333333   3344556


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh-
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL-  161 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~-  161 (382)
                      -+++|+.-||-..++.+..+    ......+.++|.+...+++...+||+.|+-++..+-+...  ...++.-.++.++ 
T Consensus       107 DLQHPNEyiRG~TLRFLckL----kE~ELlepl~p~IracleHrhsYVRrNAilaifsIyk~~~--~L~pDapeLi~~fL  180 (948)
T KOG1058|consen  107 DLQHPNEYIRGSTLRFLCKL----KEPELLEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFE--HLIPDAPELIESFL  180 (948)
T ss_pred             hccCchHhhcchhhhhhhhc----CcHHHhhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhh--hhcCChHHHHHHHH
Confidence            77889999998887776654    3334556789999999999999999999988888765421  1222333334443 


Q ss_pred             hcCCChHHHHHHHHhhHHhhhh-----hch---------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814          162 LKDEFPDVRLNIISKLDQVNQV-----IGI---------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  227 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~-----~~~---------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  227 (382)
                      ..+.++..++++.-.+...-..     ++.         +...-.++..+.+.+. .++..+...++++-.+...-++..
T Consensus       181 ~~e~DpsCkRNAFi~L~~~D~ErAl~Yl~~~idqi~~~~~~LqlViVE~Irkv~~-~~p~~~~~~i~~i~~lL~stssaV  259 (948)
T KOG1058|consen  181 LTEQDPSCKRNAFLMLFTTDPERALNYLLSNIDQIPSFNDSLQLVIVELIRKVCL-ANPAEKARYIRCIYNLLSSTSSAV  259 (948)
T ss_pred             HhccCchhHHHHHHHHHhcCHHHHHHHHHhhHhhccCccHHHHHHHHHHHHHHHh-cCHHHhhHHHHHHHHHHhcCCchh
Confidence            4556777777766554432111     100         0111122333333222 344444444444444432222111


Q ss_pred             hH------------HH-H---HHHHHHH-hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH
Q 016814          228 FD------------DK-L---GALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI  290 (382)
Q Consensus       228 ~~------------~~-l---~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a  290 (382)
                      ..            +. +   ...+..+ .+.++-+++.....-+..+..  +.+...+.++--++..+..++..+|.-+
T Consensus       260 ~fEaa~tlv~lS~~p~alk~Aa~~~i~l~~kesdnnvklIvldrl~~l~~--~~~~il~~l~mDvLrvLss~dldvr~Kt  337 (948)
T KOG1058|consen  260 IFEAAGTLVTLSNDPTALKAAASTYIDLLVKESDNNVKLIVLDRLSELKA--LHEKILQGLIMDVLRVLSSPDLDVRSKT  337 (948)
T ss_pred             hhhhcceEEEccCCHHHHHHHHHHHHHHHHhccCcchhhhhHHHHHHHhh--hhHHHHHHHHHHHHHHcCcccccHHHHH
Confidence            00            00 0   0011111 122233333333333333331  1233344455556677888999999999


Q ss_pred             HHHHHHhccccChhhhhhhhHHHHHhh---ccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhH
Q 016814          291 LRAISLLAPVMGSEITCSRLLPVVINA---SKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFF  367 (382)
Q Consensus       291 ~~~l~~l~~~~~~~~~~~~~l~~l~~~---l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~  367 (382)
                      +.....++..-..+.....+-..+.+-   -+|.+-..|..-++++...+..+.  .....++|.+...+.|.++.--..
T Consensus       338 ldi~ldLvssrNvediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp--~~aatvV~~ll~fisD~N~~aas~  415 (948)
T KOG1058|consen  338 LDIALDLVSSRNVEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP--EVAATVVSLLLDFISDSNEAAASD  415 (948)
T ss_pred             HHHHHhhhhhccHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh--HHHHHHHHHHHHHhccCCHHHHHH
Confidence            999988887666553333332233322   234455679999999988877665  456788888888888877654333


Q ss_pred             HHHHHH
Q 016814          368 ATQAIQ  373 (382)
Q Consensus       368 a~~al~  373 (382)
                      ....+.
T Consensus       416 vl~Fvr  421 (948)
T KOG1058|consen  416 VLMFVR  421 (948)
T ss_pred             HHHHHH
Confidence            333333

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.73  E-value=5.9e-06  Score=66.52  Aligned_cols=91  Identities=16%  Similarity=0.248  Sum_probs=73.2

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCC--CccHHHHHHHHHHHHhhhhhHHHHHH
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR--VPNIKFNVAKVLQSLIPIVDQSMVEK  347 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~~~~~~  347 (382)
                      .-+..+.+.+.+++.-.|..++.+++++-.        +.-+|.+.+.|.|.  ++.||--|+++|+.++.        .
T Consensus       187 eaI~al~~~l~~~SalfrhEvAfVfGQl~s--------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--------e  250 (289)
T KOG0567|consen  187 EAINALIDGLADDSALFRHEVAFVFGQLQS--------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--------E  250 (289)
T ss_pred             HHHHHHHHhcccchHHHHHHHHHHHhhccc--------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--------H
Confidence            356677788888899999999999999864        23456666666554  56799999999999874        5


Q ss_pred             hHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          348 TIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ..++.|.+.++|+++-||..+.-|+...-
T Consensus       251 ~~~~vL~e~~~D~~~vv~esc~valdm~e  279 (289)
T KOG0567|consen  251 DCVEVLKEYLGDEERVVRESCEVALDMLE  279 (289)
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence            67888999999999999999998887553

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.72  E-value=1.9e-06  Score=71.37  Aligned_cols=185  Identities=15%  Similarity=0.137  Sum_probs=126.7

Q ss_pred             hhhhcc-CCCHHHHHHHHHHHHHHHHHhCCcc-cc-cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814           41 IVNFSQ-DKSWRVRYMVANQLYELCEAVGPEP-TR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  117 (382)
Q Consensus        41 l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~-~~-~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  117 (382)
                      +..+++ .+++.+++.+.-.+++.+..-.... .. ...++.+..+++++++.+|..|+.++.+++.........+..++
T Consensus        17 Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~   96 (254)
T PF04826_consen   17 LLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIP   96 (254)
T ss_pred             HHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHH
Confidence            344444 6788999999999998764332222 11 24799999999999999999999999988655433333334455


Q ss_pred             hhhhh-cC-CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--chhhHhhhH
Q 016814          118 CVKEL-SS-DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--GIDLLSQSL  193 (382)
Q Consensus       118 ~l~~~-~~-d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~--~~~~~~~~l  193 (382)
                      .+.+. .. ..+..++.++.+.|..+.-.-........-+|.+..++...+..+|..+++.+..++..-  ..+-+....
T Consensus        97 ~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~  176 (254)
T PF04826_consen   97 QVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQV  176 (254)
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccc
Confidence            55543 33 246688999999999997544434444456777788888889999999999888876542  233344456


Q ss_pred             HHHHHHHhcCC-CchHHHHHHHHhHHHHhhhch
Q 016814          194 LPAIVELAEDR-HWRVRLAIIEYIPLLASQLGV  225 (382)
Q Consensus       194 lp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~  225 (382)
                      ++.+..++..+ +..+...++..+..+...+.+
T Consensus       177 ~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~  209 (254)
T PF04826_consen  177 LSSFLSLFNSSESKENLLRVLTFFENINENIKK  209 (254)
T ss_pred             hhHHHHHHccCCccHHHHHHHHHHHHHHHhhCc
Confidence            66777777654 456666777777777665544

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=5.6e-05  Score=69.12  Aligned_cols=294  Identities=15%  Similarity=0.135  Sum_probs=181.7

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      +|.--..|+.+++.++..--.+.+.+++-.++..  .+..+.||+.++-++-.+-+..++-.-..+-...++.+++|.+-
T Consensus       124 n~~fv~LAL~~I~niG~re~~ea~~~DI~KlLvS--~~~~~~vkqkaALclL~L~r~spDl~~~~~W~~riv~LL~D~~~  201 (938)
T KOG1077|consen  124 NPTFVCLALHCIANIGSREMAEAFADDIPKLLVS--GSSMDYVKQKAALCLLRLFRKSPDLVNPGEWAQRIVHLLDDQHM  201 (938)
T ss_pred             CcHHHHHHHHHHHhhccHhHHHHhhhhhHHHHhC--CcchHHHHHHHHHHHHHHHhcCccccChhhHHHHHHHHhCcccc
Confidence            3444456677776666543333333334332222  46667999999999999888765543334567778889999998


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh---hc-------------CCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKE---LS-------------SDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~---~~-------------~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      .|-.++...+..+++..+++.- ..+.+.+.+   .+             .=+.|+....+++.|..+- ...+......
T Consensus       202 gv~ta~~sLi~~lvk~~p~~yk-~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p-~~~D~~~r~~  279 (938)
T KOG1077|consen  202 GVVTAATSLIEALVKKNPESYK-TCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYP-TPEDPSTRAR  279 (938)
T ss_pred             ceeeehHHHHHHHHHcCCHHHh-hhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCC-CCCCchHHHH
Confidence            8988998888888888776621 111111111   11             1256777777777777662 2222223344


Q ss_pred             hHHHHHHhhcCCC-----hHHHH-----HHHHhhHHhhhhhch-hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          154 LLPIFLSLLKDEF-----PDVRL-----NIISKLDQVNQVIGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       154 l~~~l~~~l~d~~-----~~vr~-----~~~~~l~~~~~~~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                      +...+..+++-.+     ..|..     +++-..-.++-.+.+ +.....-...+.+++.+....+|.-+++.+..++..
T Consensus       280 l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss  359 (938)
T KOG1077|consen  280 LNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASS  359 (938)
T ss_pred             HHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc
Confidence            5555555543211     22222     222111222222222 233355566677788899999999999999988865


Q ss_pred             hc-hhhhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814          223 LG-VGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       223 ~~-~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  300 (382)
                      -. .+... +-...+...|+ +++..||..|+..+-.++..-..    +.++..+++.+..-++.+|+-.+.-+..+++.
T Consensus       360 ~~s~davK-~h~d~Ii~sLkterDvSirrravDLLY~mcD~~Na----k~IV~elLqYL~tAd~sireeivlKvAILaEK  434 (938)
T KOG1077|consen  360 EFSIDAVK-KHQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNA----KQIVAELLQYLETADYSIREEIVLKVAILAEK  434 (938)
T ss_pred             cchHHHHH-HHHHHHHHHhccccchHHHHHHHHHHHHHhchhhH----HHHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            32 23333 33677777787 89999999999999888864322    45667777777778888888877777777777


Q ss_pred             cChh--hhhhhhHH
Q 016814          301 MGSE--ITCSRLLP  312 (382)
Q Consensus       301 ~~~~--~~~~~~l~  312 (382)
                      +..+  +|...++.
T Consensus       435 yAtDy~WyVdviLq  448 (938)
T KOG1077|consen  435 YATDYSWYVDVILQ  448 (938)
T ss_pred             hcCCcchhHHHHHH
Confidence            6654  44444443

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=98.68  E-value=2.5e-05  Score=73.85  Aligned_cols=344  Identities=14%  Similarity=0.155  Sum_probs=200.2

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC--CcccccchH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLV   77 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~--~~~~~~~ll   77 (382)
                      |..+++.++..+...++.++..++-....  .-....++|.+.+++..++..++..+++.|.+++..-.  .......++
T Consensus       295 Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlI  374 (708)
T PF05804_consen  295 LVKCLDRENEELLILAVTFLKKLSIFKENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLI  374 (708)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCc
Confidence            34556677788888888888888754322  23355688888999998999999999999999884222  233345689


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh-HH-H
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA-TI-E  152 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~~-~  152 (382)
                      |.+..++.|++  .|..++..|..++..-...  ......+|.+.+++ ..+++.+...++..+..++..-.... .. .
T Consensus       375 PkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g  452 (708)
T PF05804_consen  375 PKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG  452 (708)
T ss_pred             HHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc
Confidence            99999998764  4566777787775421111  11234667777654 44556666555555555553222111 11 1


Q ss_pred             hhHHHHH-HhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhh----c
Q 016814          153 QLLPIFL-SLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQL----G  224 (382)
Q Consensus       153 ~l~~~l~-~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~----~  224 (382)
                      ..++.+. ..++..++-+    ++.+..++..-|+  ..+.+ ++..+...+.. +++.   ..+++++.++..-    +
T Consensus       453 ~gL~~L~~ra~~~~D~lL----lKlIRNiS~h~~~~k~~f~~-~i~~L~~~v~~~~~ee---~~vE~LGiLaNL~~~~ld  524 (708)
T PF05804_consen  453 NGLQSLMKRALKTRDPLL----LKLIRNISQHDGPLKELFVD-FIGDLAKIVSSGDSEE---FVVECLGILANLTIPDLD  524 (708)
T ss_pred             CcHHHHHHHHHhcccHHH----HHHHHHHHhcCchHHHHHHH-HHHHHHHHhhcCCcHH---HHHHHHHHHHhcccCCcC
Confidence            2233333 3344333221    2222333322221  12222 23333333433 3444   4445555544322    1


Q ss_pred             hh-hhH-HHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHH
Q 016814          225 VG-FFD-DKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH--YLYRMTILRAISL  296 (382)
Q Consensus       225 ~~-~~~-~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~  296 (382)
                      -. .+. ..++|.+.+.+...  ...+...++..+|.++..-..  -.....+++.+.++++..+  ...-...+.++.+
T Consensus       525 ~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~  604 (708)
T PF05804_consen  525 WAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQ  604 (708)
T ss_pred             HHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            11 122 25888888888653  346778888888877642111  1124567888888887654  4455566677777


Q ss_pred             hccccCh-hh--hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh-------H---HHHHHhHHHHHHH
Q 016814          297 LAPVMGS-EI--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD-------Q---SMVEKTIRPCLVE  355 (382)
Q Consensus       297 l~~~~~~-~~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~-------~---~~~~~~i~~~l~~  355 (382)
                      +..+-.. +.  ....+...++..++|+|+.+|..|-.+|.-+++.-.       .   ..+..+++..+..
T Consensus       605 ll~h~~tr~~ll~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~e~d~~w~~ri~~~kF~~hN~~WLe~v~~  676 (708)
T PF05804_consen  605 LLFHEETREVLLKETEIPAYLIDLMHDKNAEIRKVCDNALDIIAEYDEEWAERIRREKFRWHNAQWLEMVES  676 (708)
T ss_pred             HHcChHHHHHHHhccchHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            6644221 11  225677789999999999999999999988875422       1   1344677777754

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=98.67  E-value=2.5e-06  Score=68.61  Aligned_cols=220  Identities=17%  Similarity=0.169  Sum_probs=133.3

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCC--CchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      +..+.+...|.+...+...+.++++...        ..-+|.+...+.|  ..|.||..+.++|+.+..        +..
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~--------~~Av~~l~~vl~desq~pmvRhEAaealga~~~--------~~~  101 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD--------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIGD--------PES  101 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc--------chhhHHHHHHhcccccchHHHHHHHHHHHhhcc--------hhh
Confidence            4444444455444445555555554322        2345666665554  346677777777777751        345


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh------H---------hhhHHHHHHHHhcCCCc--hHHHHHHHHhH
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL------L---------SQSLLPAIVELAEDRHW--RVRLAIIEYIP  217 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~------~---------~~~llp~l~~~~~d~~~--~vr~~~~~~l~  217 (382)
                      .+++.++.+|+...||..+.-++.++-..-+.+.      +         ...=++.+...+.|.+.  --|..++-.+.
T Consensus       102 ~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LR  181 (289)
T KOG0567|consen  102 LEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLR  181 (289)
T ss_pred             HHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhh
Confidence            6677777777777777776666666532211111      0         00112223333333221  11222222222


Q ss_pred             HHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc--chHHHHHHHHHHH
Q 016814          218 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP--HYLYRMTILRAIS  295 (382)
Q Consensus       218 ~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~  295 (382)
                      .+    |.    +.-+-.+...+.+++.-.|..++-.+|.+-+.        .-+|.+.+.+.|.  ++-+|.-|+.+++
T Consensus       182 n~----g~----EeaI~al~~~l~~~SalfrhEvAfVfGQl~s~--------~ai~~L~k~L~d~~E~pMVRhEaAeALG  245 (289)
T KOG0567|consen  182 NI----GT----EEAINALIDGLADDSALFRHEVAFVFGQLQSP--------AAIPSLIKVLLDETEHPMVRHEAAEALG  245 (289)
T ss_pred             cc----Cc----HHHHHHHHHhcccchHHHHHHHHHHHhhccch--------hhhHHHHHHHHhhhcchHHHHHHHHHHH
Confidence            21    11    22344566777888888999999998887653        3677777777664  5889999999999


Q ss_pred             HhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814          296 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       296 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  336 (382)
                      .++.        +..++.+..+++|+.+-||.+|.-+|...
T Consensus       246 aIa~--------e~~~~vL~e~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  246 AIAD--------EDCVEVLKEYLGDEERVVRESCEVALDML  278 (289)
T ss_pred             hhcC--------HHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            9873        46677888999999999999999998755

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.67  E-value=1.6e-05  Score=69.63  Aligned_cols=247  Identities=16%  Similarity=0.103  Sum_probs=147.8

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhh---hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH--
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY--   80 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l--   80 (382)
                      ..|++..+|..|++.++..+...+.+.   ....+--++..+..+.+..|-..++++|..+.+.........++++.-  
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr  346 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR  346 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence            468888999999999999999855422   122244456667778889999999999999998888776666665554  


Q ss_pred             -HHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhH---hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           81 -VRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILP---CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        81 -~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~---~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                       ..+..|.++.+|.++...++.+++..+..   .+.+.+..   .+.-.++|+++.|-.++-..+....+.+..    +.
T Consensus       347 lR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~l~r----ke  422 (533)
T KOG2032|consen  347 LRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPNLVR----KE  422 (533)
T ss_pred             HHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCchhHH----HH
Confidence             45778899999999999999999887643   22222222   222346899998755443333333333332    23


Q ss_pred             hHHHHHHhhcCCChHHHHHHH-HhhHHhhhhhchhhHhhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhch----hh
Q 016814          154 LLPIFLSLLKDEFPDVRLNII-SKLDQVNQVIGIDLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGV----GF  227 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~-~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~----~~  227 (382)
                      +..++.+.+ |.... |.... ..++.=...+-++.. ..+......+++ .+| .+|.++...-..+..++.+    ..
T Consensus       423 ~~~~~q~~l-d~~~~-~~q~Fyn~~c~~L~~i~~d~l-~~~~t~~~~~f~-sswe~vr~aavl~t~~~vd~l~~~~c~~~  498 (533)
T KOG2032|consen  423 LYHLFQESL-DTDMA-RFQAFYNQWCIQLNHIHPDIL-MLLLTEDQHIFS-SSWEQVREAAVLKTTRSVDSLVRAACSSA  498 (533)
T ss_pred             HHHHHhhhh-HHhHH-HHHHHHHHHHHHHhhhCHHHH-HHHHHhchhhee-cchHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence            333333333 22221 11111 111000000111100 111111122233 345 7777777666655544432    23


Q ss_pred             hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          228 FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       228 ~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                      ...++...+..+..|+-++++..+.++++.+..
T Consensus       499 d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  499 DGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             hHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            345677788888899999999999998887653

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.65  E-value=2.3e-06  Score=74.24  Aligned_cols=191  Identities=14%  Similarity=0.119  Sum_probs=124.7

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCccc--ccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPT--RMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~--~~~   75 (382)
                      +.++-+++...-|..|+.-|..+...-+-   ++....++-.+.+.+.| .+...|+.+.+.|..+++.-+....  ...
T Consensus       292 l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~  371 (516)
T KOG2956|consen  292 LKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEI  371 (516)
T ss_pred             HHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHH
Confidence            44555666667778888766665553211   23334566677777777 7888899999999998876654322  223


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH---HH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IE  152 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~  152 (382)
                      .+-.+++...|+...|-..|.+.....+....+......+.|.+..    .+...-..+++.+..+.+.+..+..   .+
T Consensus       372 ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~  447 (516)
T KOG2956|consen  372 AICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILT----ADEPRAVAVIKMLTKLFERLSAEELLNLLP  447 (516)
T ss_pred             HHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHHHHHHhhh
Confidence            5666677777877766556666655555555555444455566655    3344445666777777777776542   36


Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  200 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~  200 (382)
                      .+.|.+.+.....+..||+.++-+|-.+...+|.    +.+.|++.++
T Consensus       448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~----~~mePhL~~L  491 (516)
T KOG2956|consen  448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGM----EEMEPHLEQL  491 (516)
T ss_pred             hhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhH----HhhhhHhhhc
Confidence            7778888888888888888888888888887775    3445555544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=98.65  E-value=5.3e-06  Score=68.79  Aligned_cols=205  Identities=12%  Similarity=0.071  Sum_probs=114.4

Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhhHhh--hHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHH-HHh
Q 016814          164 DEFPDVRLNIISKLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCM-QWL  240 (382)
Q Consensus       164 d~~~~vr~~~~~~l~~~~~~~~~~~~~~--~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~-~~l  240 (382)
                      ..+|.+++.+..+++....+-....+..  ..++.+..++.++++.+|..++.++..++.........+..++.+. ...
T Consensus        24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~  103 (254)
T PF04826_consen   24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV  103 (254)
T ss_pred             CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence            3456666666666666543322211111  2466667777777777777777777666543322111112222222 222


Q ss_pred             cc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC--hhhhhhhhHHHHHhh
Q 016814          241 QD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEITCSRLLPVVINA  317 (382)
Q Consensus       241 ~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~--~~~~~~~~l~~l~~~  317 (382)
                      .+ .+.+++.++++.|..+.-.-.........+|.++.++...+..+|..++.++..++.+-.  .+....+.++.++.+
T Consensus       104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~L  183 (254)
T PF04826_consen  104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLSL  183 (254)
T ss_pred             cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHHH
Confidence            22 255667777777776653222222333456666777777777777777777777765433  223445566666666


Q ss_pred             ccCC-CccHHHHHHHHHHHHhhhhhHH------------H------HHHhHHHHHHHhcCCCCccHHhHH
Q 016814          318 SKDR-VPNIKFNVAKVLQSLIPIVDQS------------M------VEKTIRPCLVELTEDPDVDVRFFA  368 (382)
Q Consensus       318 l~d~-~~~vR~~a~~~l~~i~~~~~~~------------~------~~~~i~~~l~~l~~d~~~~vr~~a  368 (382)
                      +... ..++-..++..+..+...+..+            .      -...+-..|..+...+|++||..+
T Consensus       184 f~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~v  253 (254)
T PF04826_consen  184 FNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQV  253 (254)
T ss_pred             HccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhhc
Confidence            6554 4556667777777776554432            0      013566667777888999998753

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.65  E-value=1.7e-07  Score=69.16  Aligned_cols=108  Identities=19%  Similarity=0.193  Sum_probs=79.7

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--  109 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--  109 (382)
                      ..+++.+.+.+.+.++.+|..++.+++.++...+.   ......++|.+.++++|+++.+|..++.+|++++...+..  
T Consensus         6 ~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~   85 (120)
T cd00020           6 AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKL   85 (120)
T ss_pred             cCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHH
Confidence            34677777778888889999999998888864222   2223467888888888888888888888888887654321  


Q ss_pred             -HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814          110 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  142 (382)
Q Consensus       110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~  142 (382)
                       .....+++.+.+.+++.+..+|..++.++..++
T Consensus        86 ~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          86 IVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             223457888888888888888888888887765

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.64  E-value=4e-05  Score=70.89  Aligned_cols=287  Identities=15%  Similarity=0.127  Sum_probs=176.9

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      ..+.|++-.++.+....|-..++.++..+-...+.+.  .-.+..+..+++.+....|-++.+.|..++...+...  ..
T Consensus       244 s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l--~pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~~  319 (865)
T KOG1078|consen  244 SPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSREL--APAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--TV  319 (865)
T ss_pred             hhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhc--chHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--cc
Confidence            4578888888888888888888888777654443331  1245667778889999999999999999886554321  11


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      .-+-+..+++|.+-.+-.-++..+-+-+...+   . +.++..+..+..|=+..-+....+.+..++..++..  ...++
T Consensus       320 cN~elE~lItd~NrsIat~AITtLLKTG~e~s---v-~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k--~~~~m  393 (865)
T KOG1078|consen  320 CNLDLESLITDSNRSIATLAITTLLKTGTESS---V-DRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRK--HTVMM  393 (865)
T ss_pred             cchhHHhhhcccccchhHHHHHHHHHhcchhH---H-HHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHH--HHHHH
Confidence            22335566777665554444444333322222   2 444444444333333333344445555555544433  23466


Q ss_pred             HHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814          234 ALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLP  312 (382)
Q Consensus       234 ~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  312 (382)
                      +.+.++|.+ ...+-+.+.++++..+++.....  .+.-+..+.+++.|..+  +.-+...+..++.-.+....-.+.+-
T Consensus       394 ~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pds--Ke~~L~~LCefIEDce~--~~i~~rILhlLG~EgP~a~~Pskyir  469 (865)
T KOG1078|consen  394 NFLSNMLREEGGFEFKRAIVDAIIDIIEENPDS--KERGLEHLCEFIEDCEF--TQIAVRILHLLGKEGPKAPNPSKYIR  469 (865)
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHhCcch--hhHHHHHHHHHHHhccc--hHHHHHHHHHHhccCCCCCCcchhhH
Confidence            667776654 45677888888888888754332  34466677777776543  34566666666654442211122222


Q ss_pred             HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      .+.+...=++..||.+|..++.+++  .+.......+.-.+..++.|+|.+||..|.-++..+-
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            2333333356889999999999998  3333445678888888999999999999988887664

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=0.00015  Score=60.53  Aligned_cols=319  Identities=13%  Similarity=0.152  Sum_probs=190.6

Q ss_pred             HHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchHHHHHHhcCCCcH
Q 016814           17 AVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        17 a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll~~l~~~l~d~~~   89 (382)
                      .+.++..+-+...+....+.++|.++..+..++..|+..+|+.++-+.+....+..       ..+++|.++.+...++.
T Consensus        63 cVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggedd  142 (524)
T KOG4413|consen   63 CVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDD  142 (524)
T ss_pred             HHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcH
Confidence            66677777776666677788999999999888999999999999999988775432       34689999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhCHH--HHHHhhhHhh--hhhcCCCchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhh
Q 016814           90 EVRIAAAGKVTKFCRILNPE--LAIQHILPCV--KELSSDSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLL  162 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l--~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l  162 (382)
                      .|-++|.+.+..++..-..-  .+.++++..+  ..+..-.+..+|--..+.+..+....+   .+.....++..+..-+
T Consensus       143 eVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaEl  222 (524)
T KOG4413|consen  143 EVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAEL  222 (524)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHh
Confidence            99999999999986532110  1111111111  112222344555555555555544332   2334466777666655


Q ss_pred             cC-CChHHHHHHHHhhHHhhhh-hchhhHh-hhHHHHHHHHhc--CCCchHHHHHHHHhHHHHhhhchhhhH----HHH-
Q 016814          163 KD-EFPDVRLNIISKLDQVNQV-IGIDLLS-QSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD----DKL-  232 (382)
Q Consensus       163 ~d-~~~~vr~~~~~~l~~~~~~-~~~~~~~-~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~----~~l-  232 (382)
                      +. ++.-|+.+++.....+... .|.+.+. +.++..+...+.  |.++--+..++..++   +.+|.+...    +.+ 
T Consensus       223 kGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfg---kffgkeaimdvseeaic  299 (524)
T KOG4413|consen  223 KGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFG---KFFGKEAIMDVSEEAIC  299 (524)
T ss_pred             cCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHH---HHhcchHHhhcCHHHHH
Confidence            55 7788899998888777654 2332221 345566655542  444433333333333   333332211    122 


Q ss_pred             ------HHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-HHHhhhH---HHHHhhhcCcc-hHHHHHHHHHHHHhcccc
Q 016814          233 ------GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHIT---PQVLEMINNPH-YLYRMTILRAISLLAPVM  301 (382)
Q Consensus       233 ------~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~---~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~  301 (382)
                            +.-...+....++....+|+.++|.+.++.... ...+.--   ..+.....|.+ ..-.++++.++..++...
T Consensus       300 ealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel  379 (524)
T KOG4413|consen  300 EALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL  379 (524)
T ss_pred             HHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence                  222234455677888999999999988765432 2221111   12222223333 334456667776665322


Q ss_pred             C--hhh--------------h-----hhhh--HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          302 G--SEI--------------T-----CSRL--LPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       302 ~--~~~--------------~-----~~~~--l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .  ++.              |     ..++  +..++..+..+.+++|.++.+++..++.
T Consensus       380 rlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  380 RLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             cCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            1  110              0     1122  2346677888899999999999998875

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.60  E-value=0.00065  Score=64.85  Aligned_cols=353  Identities=14%  Similarity=0.103  Sum_probs=208.4

Q ss_pred             HHHHHHHHHHHhccChhhhhhhhhhhhhhhc--------cCCCHHHHHHHHHHHHHHHHHhCCc-cccc----chHHHHH
Q 016814           15 LLAVEGCAALGKLLEPQDCVAHILPVIVNFS--------QDKSWRVRYMVANQLYELCEAVGPE-PTRM----DLVPAYV   81 (382)
Q Consensus        15 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~--------~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~----~ll~~l~   81 (382)
                      .+|...+..+++.=++ +..+.+++++.+.+        ..++++-+..|.+.++.+++.+.+. .+++    .+.+.++
T Consensus       390 ~Aa~~~l~~~~~KR~k-e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVf  468 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKRGK-ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVF  468 (1010)
T ss_pred             HHHHHHHHHHHHhcch-hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhh
Confidence            4566666666665444 33444555555543        2457788899999999999888763 3222    3666677


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHH-HhhCHHHHHHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccCh--HhHHHhhHHH
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFC-RILNPELAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPI  157 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~  157 (382)
                      ..++++....|..|++.++.++ ..+........++....+++. |.+-.||..++-++..+......  +...+.+-|.
T Consensus       469 P~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~  548 (1010)
T KOG1991|consen  469 PEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPI  548 (1010)
T ss_pred             HhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHH
Confidence            7789999999999999999998 556666666677777777776 88889999999999998765442  2233344444


Q ss_pred             HHH---hhcCCChHHHHHHHH-hhHHhhhhhchh--hHhhhHHHHHHHHhcC---CCc---hHHHHH---HHHhHHHHhh
Q 016814          158 FLS---LLKDEFPDVRLNIIS-KLDQVNQVIGID--LLSQSLLPAIVELAED---RHW---RVRLAI---IEYIPLLASQ  222 (382)
Q Consensus       158 l~~---~l~d~~~~vr~~~~~-~l~~~~~~~~~~--~~~~~llp~l~~~~~d---~~~---~vr~~~---~~~l~~l~~~  222 (382)
                      +.+   +.++-+-+.-..+++ -++.+.+.+.+-  .+.+++...+.+++.+   .+.   .-..++   ++.+..+...
T Consensus       549 mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s  628 (1010)
T KOG1991|consen  549 MQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLS  628 (1010)
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHH
Confidence            444   444433333333332 234444443321  2225555566666542   111   112233   3344444444


Q ss_pred             hc--hhh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH---hChHHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 016814          223 LG--VGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE---FGPEWAMQHITPQVLEMINNPHYLYRMTILRAI  294 (382)
Q Consensus       223 ~~--~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~---~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l  294 (382)
                      +.  ++.   ..+.++|++...++..-.++-+.+...+..+.-.   .+++  +=.+++.+.+.+.+.....=....-++
T Consensus       629 ~e~~p~vl~~le~~~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~--mW~ll~li~e~~~~~~~dyf~d~~~~l  706 (1010)
T KOG1991|consen  629 LENHPEVLKQLEPIVLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPI--MWGLLELILEVFQDDGIDYFTDMMPAL  706 (1010)
T ss_pred             HhccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHH--HHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            43  222   3356778887888776666666665555444332   2222  224777777777776655445555666


Q ss_pred             HHhccccChh-----hhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh----cC--CCC
Q 016814          295 SLLAPVMGSE-----ITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL----TE--DPD  361 (382)
Q Consensus       295 ~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l----~~--d~~  361 (382)
                      ..+...-..+     .+.+.++..+-+.+.+++  ..=+..|++.+..+...++.  ..++.+|.+.++    +.  +.+
T Consensus       707 ~N~vt~g~~~~~s~~~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~iiL~~kg--~~dq~iplf~~~a~~~l~~~~e~  784 (1010)
T KOG1991|consen  707 HNYVTYGTPSLLSNPDYLQILLEIIKKVLTSENGEDSDCESACKLLEVIILNCKG--LLDQYIPLFLELALSRLTREVET  784 (1010)
T ss_pred             hhheeeCchhhhccchHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHhcC--cHhhHhHHHHHHHHHHHhccccc
Confidence            6554332222     344556666777777643  33566789999999888776  223344544443    22  355


Q ss_pred             ccHHhHHHHHH
Q 016814          362 VDVRFFATQAI  372 (382)
Q Consensus       362 ~~vr~~a~~al  372 (382)
                      ...|..+.+.+
T Consensus       785 s~~~~~~leVv  795 (1010)
T KOG1991|consen  785 SELRVMLLEVV  795 (1010)
T ss_pred             hHHHHHHHHHH
Confidence            56676665544

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=98.59  E-value=5.8e-07  Score=66.26  Aligned_cols=107  Identities=16%  Similarity=0.085  Sum_probs=73.2

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--h
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--I  305 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~  305 (382)
                      .+++.+...+.+.++++|..++.+++.++....   .......++|.+.+.+.++++.+|..++.+++.++...+..  .
T Consensus         7 ~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~   86 (120)
T cd00020           7 GGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLI   86 (120)
T ss_pred             CChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHH
Confidence            356667777777778888888888887775321   12233367778888888877888888888888887654321  1


Q ss_pred             -hhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814          306 -TCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       306 -~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  337 (382)
                       ....+++.+...+.+.+..+|..++.+|..+.
T Consensus        87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence             22346777777777777778877777777654

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=0.00024  Score=59.33  Aligned_cols=320  Identities=15%  Similarity=0.123  Sum_probs=192.3

Q ss_pred             HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhHhhhhhcCCC
Q 016814           54 YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDS  126 (382)
Q Consensus        54 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~~~~il~~l~~~~~d~  126 (382)
                      ...+.++..+-+..........+.|.+...+..++..|+.-+++.++.+.+.++..       .+...++|.+..++..+
T Consensus        61 tlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIgge  140 (524)
T KOG4413|consen   61 TLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE  140 (524)
T ss_pred             hhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC
Confidence            34777888887766665556678999999999999999999999999999988744       23567899999999999


Q ss_pred             chHHHHHHHHHHHhhccccCh-H-hHHHhhHHH--HHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHHHH
Q 016814          127 SQHVRSALASVIMGMAPLLGK-D-ATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIV  198 (382)
Q Consensus       127 ~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~--l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~l~  198 (382)
                      +..|-.++.+.+..++..-.. + .+...+..-  +.++....+.-+|..+...+-.+.+. +++..    ...++..+.
T Consensus       141 ddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSi-SpesaneckkSGLldlLe  219 (524)
T KOG4413|consen  141 DDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSI-SPESANECKKSGLLDLLE  219 (524)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHH
Confidence            999999999999988742110 0 011111111  11222223445555555555554432 22221    123444443


Q ss_pred             -HHhcCCCchHHHHHHHHhHHHHhhh-chhhhH-HHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhChHH-------
Q 016814          199 -ELAEDRHWRVRLAIIEYIPLLASQL-GVGFFD-DKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEW-------  266 (382)
Q Consensus       199 -~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~~~-~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~-------  266 (382)
                       ++-+.++.-|+..+++....++..- |.++.. ..++..+-+.+.  |.++.-+-.+....+++   +|++.       
T Consensus       220 aElkGteDtLVianciElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkf---fgkeaimdvsee  296 (524)
T KOG4413|consen  220 AELKGTEDTLVIANCIELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKF---FGKEAIMDVSEE  296 (524)
T ss_pred             HHhcCCcceeehhhHHHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHH---hcchHHhhcCHH
Confidence             3344577788888888888887644 333332 234444444442  44444444444444444   34332       


Q ss_pred             -HHhh---hHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhh----hHHHHHhhccCCCcc-HHHHHHHHHHHHh
Q 016814          267 -AMQH---ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSR----LLPVVINASKDRVPN-IKFNVAKVLQSLI  337 (382)
Q Consensus       267 -~~~~---l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~----~l~~l~~~l~d~~~~-vR~~a~~~l~~i~  337 (382)
                       ..+.   .+...++++...++....+|+.+++.++.+........+    -...++....|.+.+ -...++.+|..|+
T Consensus       297 aicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIa  376 (524)
T KOG4413|consen  297 AICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIA  376 (524)
T ss_pred             HHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhh
Confidence             2222   233345566666778889999999999877543322211    122334444455554 4566777888776


Q ss_pred             hhhhH--H--------------HHHH-------hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          338 PIVDQ--S--------------MVEK-------TIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       338 ~~~~~--~--------------~~~~-------~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      .....  +              +|..       .=+..+...++.|.+++|.++.+.+-.++.
T Consensus       377 gelrlkpeqitDgkaeerlrclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaa  439 (524)
T KOG4413|consen  377 GELRLKPEQITDGKAEERLRCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAA  439 (524)
T ss_pred             ccccCChhhccccHHHHHHHHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHc
Confidence            53321  1              1110       123345556788899999999999887763

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=4.6e-05  Score=70.49  Aligned_cols=288  Identities=12%  Similarity=0.129  Sum_probs=169.4

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  113 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  113 (382)
                      ...+.+++..++.++...|-..+++.+..+....+.+..  ..+..+.-++..+....|-+|...|..++...+...  .
T Consensus       243 ~s~~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v--~  318 (865)
T KOG1078|consen  243 DSPLFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRELA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAV--T  318 (865)
T ss_pred             hhhHHHHHHHHHhchhHHHHHHHHHHHhhccccCHhhcc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccc--c
Confidence            456888899999999999999999998877654443332  256666778899999999999999999987665431  1


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  193 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l  193 (382)
                      ..=+-+..++.|.+-.+-.-++..+-.-..    +...+.++..+..++.|-+.+-+..++.++..++...+...  ..+
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKTG~----e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~--~~~  392 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKTGT----ESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKH--TVM  392 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHhcc----hhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHH--HHH
Confidence            223456677888887766666655554433    44455666666666555454444444555555544443322  345


Q ss_pred             HHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhH
Q 016814          194 LPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  272 (382)
Q Consensus       194 lp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~  272 (382)
                      ++.+..++. +....-+.+..+++..++.......  ..-+..+...+.|..  -+.-+...++.+.+........+..+
T Consensus       393 m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK--e~~L~~LCefIEDce--~~~i~~rILhlLG~EgP~a~~Pskyi  468 (865)
T KOG1078|consen  393 MNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK--ERGLEHLCEFIEDCE--FTQIAVRILHLLGKEGPKAPNPSKYI  468 (865)
T ss_pred             HHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh--hHHHHHHHHHHHhcc--chHHHHHHHHHHhccCCCCCCcchhh
Confidence            555555554 3445667777777777665332211  112222222333321  22333333333333222111112233


Q ss_pred             HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814          273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  337 (382)
                      ..+.+..-=.+..+|.+|..++.+++  .+.....+.+.-.+.+++.|....||..|-..+..+.
T Consensus       469 r~iyNRviLEn~ivRaaAv~alaKfg--~~~~~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~  531 (865)
T KOG1078|consen  469 RFIYNRVILENAIVRAAAVSALAKFG--AQDVVLLPSILVLLKRCLNDSDDEVRDRATFYLKNLE  531 (865)
T ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHh--cCCCCccccHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence            34444333346678888888887777  3333344556666677778888888888777776665

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=98.52  E-value=0.0001  Score=67.27  Aligned_cols=270  Identities=13%  Similarity=0.118  Sum_probs=146.2

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLP  156 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~  156 (382)
                      ...++...+ .+..++.-|.+.+..+.+.++.-  .+..+..+..+++|.+..||..+++.|..+|..-+  .....+..
T Consensus        25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l--~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~--~~v~kvaD   99 (556)
T PF05918_consen   25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDL--QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNP--EHVSKVAD   99 (556)
T ss_dssp             HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGG--HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T----T-HHHHHH
T ss_pred             HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHH--HHHhHHHH
Confidence            444455555 35778888889999888877543  24567888889999999999999999999987432  34678888


Q ss_pred             HHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh--cCCCchHHHHHHHHhHHHHhhhchh------hh
Q 016814          157 IFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVG------FF  228 (382)
Q Consensus       157 ~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~------~~  228 (382)
                      ++.+++..+++.....+-++|..+...-+...    +-..+.++.  ...+..+|..++..+..-...++.+      ..
T Consensus       100 vL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~t----L~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~  175 (556)
T PF05918_consen  100 VLVQLLQTDDPVELDAVKNSLMSLLKQDPKGT----LTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEM  175 (556)
T ss_dssp             HHHHHTT---HHHHHHHHHHHHHHHHH-HHHH----HHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHH
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHhcCcHHH----HHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHH
Confidence            99999988888888888788877765533322    222333333  2345568888888776544434333      33


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHHHhhhHHHHHhhhc-----C-cchHHHHHHHH----HHH
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWAMQHITPQVLEMIN-----N-PHYLYRMTILR----AIS  295 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~~~~l~~~l~~~l~-----~-~~~~~r~~a~~----~l~  295 (382)
                      ...+...+...|.|-..+-=......|..+ +.++   ...-...+++.+.+...     + .+...-...+.    ++.
T Consensus       176 e~~i~~~ikkvL~DVTaeEF~l~m~lL~~l-k~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp  254 (556)
T PF05918_consen  176 EEFIVDEIKKVLQDVTAEEFELFMSLLKSL-KIYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALP  254 (556)
T ss_dssp             HHHHHHHHHHHCTT--HHHHHHHHHHHHTS-GG---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhC-ccccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhH
Confidence            455677777778773322111122222221 1111   12233456666664431     1 12222223333    333


Q ss_pred             HhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhc
Q 016814          296 LLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELT  357 (382)
Q Consensus       296 ~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~  357 (382)
                      .+........+...+...++..+.+-.+..|...+++++.++...+... ...++|.+..++
T Consensus       255 ~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d-~~~~L~~i~~~L  315 (556)
T PF05918_consen  255 FFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQD-ARQLLPSIFQLL  315 (556)
T ss_dssp             G-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----T-HHHHHHHHHHHH
T ss_pred             HhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHH
Confidence            3444444445666666666666666677899999999999999888655 445555555443

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=9.4e-05  Score=67.80  Aligned_cols=205  Identities=16%  Similarity=0.109  Sum_probs=122.8

Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  227 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  227 (382)
                      ..+.++.++......++..||..+++-+..+....+  .+.+.+.+...+..-+.|..+.||..++.++..+-..-+.+.
T Consensus        82 lV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee  161 (892)
T KOG2025|consen   82 LVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE  161 (892)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc
Confidence            345555555566666778888888888877766322  233336777777777788888888888888877753222221


Q ss_pred             hHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHH-HHHHHHhccccChhh
Q 016814          228 FDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTI-LRAISLLAPVMGSEI  305 (382)
Q Consensus       228 ~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a-~~~l~~l~~~~~~~~  305 (382)
                      .  .+...+..++ +||+++||.+|+.++..=.          .=+|.+.+...|-+..+|..+ ..++..+ .....+ 
T Consensus       162 ~--~v~n~l~~liqnDpS~EVRRaaLsnI~vdn----------sTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls-  227 (892)
T KOG2025|consen  162 C--PVVNLLKDLIQNDPSDEVRRAALSNISVDN----------STLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS-  227 (892)
T ss_pred             c--cHHHHHHHHHhcCCcHHHHHHHHHhhccCc----------ccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh-
Confidence            1  1222333333 5788888888877764322          244666677777665555544 3445444 222222 


Q ss_pred             hhhhhHHHHHhhccCCCccHHHHHHHHHHH-HhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          306 TCSRLLPVVINASKDRVPNIKFNVAKVLQS-LIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~-i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                       ..+-+-.+-.+++|....||.++..++.. +....     ...++..|.++--....+|+..|.+|+-.
T Consensus       228 -i~krv~LlewgLnDRe~sVk~A~~d~il~~Wl~~~-----dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  228 -IDKRVLLLEWGLNDREFSVKGALVDAILSGWLRFS-----DGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             -HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHhhhc-----cccHHHHHHHhccccchHHHHHHHHHHHH
Confidence             22444455667888888888887776654 32221     13455566666555666777777777766

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=98.51  E-value=4.7e-05  Score=69.71  Aligned_cols=172  Identities=17%  Similarity=0.127  Sum_probs=121.9

Q ss_pred             ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814           71 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus        71 ~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      .....++..+++....++..||..+++.+..+....  -++...+.+...+..-+.|..|.||..|+.++..+-..-+++
T Consensus        81 DlV~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de  160 (892)
T KOG2025|consen   81 DLVAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE  160 (892)
T ss_pred             hHHHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC
Confidence            344556777777888889999999999999887732  345566788888888899999999999999999887432222


Q ss_pred             hHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHh-HHHHhhhchh
Q 016814          149 ATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI-PLLASQLGVG  226 (382)
Q Consensus       149 ~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l-~~l~~~~~~~  226 (382)
                      .  -.+...+..++ +|++++||.+++.++..=          +.-+|.+.+-..|-+..+|+.+.+.+ +.+ ....-.
T Consensus       161 e--~~v~n~l~~liqnDpS~EVRRaaLsnI~vd----------nsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~ls  227 (892)
T KOG2025|consen  161 E--CPVVNLLKDLIQNDPSDEVRRAALSNISVD----------NSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLS  227 (892)
T ss_pred             c--ccHHHHHHHHHhcCCcHHHHHHHHHhhccC----------cccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhh
Confidence            1  23445555554 678999999998877542          44567777777888888877766643 333 211111


Q ss_pred             hhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 016814          227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKR  257 (382)
Q Consensus       227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  257 (382)
                        .++-.-.+.+.+.|.+..|+.++...+..
T Consensus       228 --i~krv~LlewgLnDRe~sVk~A~~d~il~  256 (892)
T KOG2025|consen  228 --IDKRVLLLEWGLNDREFSVKGALVDAILS  256 (892)
T ss_pred             --HHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence              13455667788999999999998877654

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.51  E-value=0.00023  Score=65.32  Aligned_cols=310  Identities=12%  Similarity=0.027  Sum_probs=168.8

Q ss_pred             hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHHH
Q 016814           33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPEL  110 (382)
Q Consensus        33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~  110 (382)
                      +.+.+...+.+-+...|+.--..|..++++++..--.+.+    -+-+-+++.  +...-||+.++-++..+-+..++-.
T Consensus       108 l~klvin~iknDL~srn~~fv~LAL~~I~niG~re~~ea~----~~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl~  183 (938)
T KOG1077|consen  108 LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSREMAEAF----ADDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDLV  183 (938)
T ss_pred             HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccHhHHHHh----hhhhHHHHhCCcchHHHHHHHHHHHHHHHhcCcccc
Confidence            3444555555555666777778888888877643222222    222223333  3457799999999999887643221


Q ss_pred             HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh---cC-------------CChHHHHHHH
Q 016814          111 AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL---KD-------------EFPDVRLNII  174 (382)
Q Consensus       111 ~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~d-------------~~~~vr~~~~  174 (382)
                      -...-...+..+++|.+-.|-.++...+..++...+++. ..-+.+.+..+.   ..             ++|=+...++
T Consensus       184 ~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~y-k~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~  262 (938)
T KOG1077|consen  184 NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESY-KTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLL  262 (938)
T ss_pred             ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHH-hhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHH
Confidence            112334567778888888888888888888877665432 222222222221   10             1111111111


Q ss_pred             HhhHHhhhhhchhhHhhhHHHHHHHHh---c----CCCc---hHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHHHhccc
Q 016814          175 SKLDQVNQVIGIDLLSQSLLPAIVELA---E----DRHW---RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDK  243 (382)
Q Consensus       175 ~~l~~~~~~~~~~~~~~~llp~l~~~~---~----d~~~---~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~  243 (382)
                      ..+... ...........+...+..++   +    .++.   .++.+.+-..-.++-+++ .......-+..+.+++.+.
T Consensus       263 rlLq~~-p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~r  341 (938)
T KOG1077|consen  263 RLLQIY-PTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHR  341 (938)
T ss_pred             HHHHhC-CCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcc
Confidence            111111 00000000011222222222   1    1111   111122222222223332 2223344556667778888


Q ss_pred             hhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCC
Q 016814          244 VYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR  321 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~  321 (382)
                      +..+|.-|++++..++..-.. +.... -...++..++ +++..+|..|+..+=.++..-..+    .++..+++++...
T Consensus       342 E~NiRYLaLEsm~~L~ss~~s~davK~-h~d~Ii~sLkterDvSirrravDLLY~mcD~~Nak----~IV~elLqYL~tA  416 (938)
T KOG1077|consen  342 ETNIRYLALESMCKLASSEFSIDAVKK-HQDTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK----QIVAELLQYLETA  416 (938)
T ss_pred             cccchhhhHHHHHHHHhccchHHHHHH-HHHHHHHHhccccchHHHHHHHHHHHHHhchhhHH----HHHHHHHHHHhhc
Confidence            888888888888888764211 22233 2566777777 888999999999998888665544    5666677777777


Q ss_pred             CccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHH
Q 016814          322 VPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCL  353 (382)
Q Consensus       322 ~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l  353 (382)
                      .+.+|.-.+--++-+++.+..+  ++..-++..+
T Consensus       417 d~sireeivlKvAILaEKyAtDy~WyVdviLqLi  450 (938)
T KOG1077|consen  417 DYSIREEIVLKVAILAEKYATDYSWYVDVILQLI  450 (938)
T ss_pred             chHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHH
Confidence            8889988888888888877654  3444444433

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.46  E-value=9.7e-06  Score=70.74  Aligned_cols=290  Identities=16%  Similarity=0.118  Sum_probs=186.0

Q ss_pred             hHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHH-HH---
Q 016814           11 DSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPA-YV---   81 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~-l~---   81 (382)
                      ..+|..+.+++..++.+++- ....-++...+.....|.++.+...+.+++..+...++.+    ..+..+... +.   
T Consensus       269 s~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~~  348 (728)
T KOG4535|consen  269 SPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTMM  348 (728)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHHH
Confidence            57899999999999998864 3334456666777788999999999999999998877632    222222111 11   


Q ss_pred             ------HhcCC-CcHHHHHHHHHHHHHHHHh----hCHHHHHHhhhHhhhhhcCCCc-hHHHHHHHHHHHhhccccChHh
Q 016814           82 ------RLLRD-NEAEVRIAAAGKVTKFCRI----LNPELAIQHILPCVKELSSDSS-QHVRSALASVIMGMAPLLGKDA  149 (382)
Q Consensus        82 ------~~l~d-~~~~VR~~a~~~l~~l~~~----~~~~~~~~~il~~l~~~~~d~~-~~vr~~a~~~l~~l~~~~~~~~  149 (382)
                            ....| ..+....+++.++.++...    ++.+  .....+.+...+.|.. .-||.++.++++.+.-+-+...
T Consensus       349 l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~--~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~lr~  426 (728)
T KOG4535|consen  349 LNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPND--RQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCLRQ  426 (728)
T ss_pred             ccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCc--chhhhHHHHhcccchHHHHHHHHHHhhceeEEeccchhh
Confidence                  11122 2244566666776665432    2222  1245677777777654 4588999998887765544322


Q ss_pred             ---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh-----chhhHhhh----HHHHHHHH---hcCCCchHHHHHHH
Q 016814          150 ---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI-----GIDLLSQS----LLPAIVEL---AEDRHWRVRLAIIE  214 (382)
Q Consensus       150 ---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~-----~~~~~~~~----llp~l~~~---~~d~~~~vr~~~~~  214 (382)
                         +...-...+...+.|..-.+|..++.+++.+...+     +++.+.+.    ++..+...   +...+.+||..+.+
T Consensus       427 d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navr  506 (728)
T KOG4535|consen  427 DVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVR  506 (728)
T ss_pred             hHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHH
Confidence               33455566777788888999999999998876653     12223222    33322222   23456789999999


Q ss_pred             HhHHHHhhhchh---hhH----HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh----HHHHhhhHHHHHhhhcC-c
Q 016814          215 YIPLLASQLGVG---FFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP----EWAMQHITPQVLEMINN-P  282 (382)
Q Consensus       215 ~l~~l~~~~~~~---~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~l~~~l~~~l~~-~  282 (382)
                      .++.+.+.+.+-   -+.    ..+...+-.........||..++.+++.+.++-.-    ..+...++|.+..++.+ .
T Consensus       507 aLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~  586 (728)
T KOG4535|consen  507 ALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCK  586 (728)
T ss_pred             HHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhc
Confidence            999988766521   111    11222222222345678999999999999875321    22456788888888765 5


Q ss_pred             chHHHHHHHHHHHHhccccC
Q 016814          283 HYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       283 ~~~~r~~a~~~l~~l~~~~~  302 (382)
                      |..+|..|+.++..-.+-.+
T Consensus       587 NFKVRi~AA~aL~vp~~re~  606 (728)
T KOG4535|consen  587 NFKVRIRAAAALSVPGKREQ  606 (728)
T ss_pred             cceEeehhhhhhcCCCCccc
Confidence            78999999998877665444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=5.4e-05  Score=69.57  Aligned_cols=158  Identities=20%  Similarity=0.150  Sum_probs=104.6

Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL  193 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l  193 (382)
                      ..-|.+.+++.|.+|..|.....+++.--...|+.   ..+-..+.-.++|.+.+||+++..+++-++-. .     ...
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnn---kair~lLh~aVsD~nDDVrRaAVialGFVl~~-d-----p~~  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGTGNN---KAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-D-----PEQ  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCch---hhHHHhhcccccccchHHHHHHHHHheeeEec-C-----hhh
Confidence            35577888999999999998887766433323322   12223333347899999999999998876422 1     234


Q ss_pred             HHHHHHHh-cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH--HHhh
Q 016814          194 LPAIVELA-EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW--AMQH  270 (382)
Q Consensus       194 lp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~  270 (382)
                      +|...+++ .+.|+.||..++-.++..+..-|..    .-+.++..+..|+..-||+.|+-+++.+.-....+.  -...
T Consensus       590 ~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~  665 (929)
T KOG2062|consen  590 LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNG  665 (929)
T ss_pred             chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHH
Confidence            44444444 5678999999999999888766654    344556667789999999999999998875543211  1123


Q ss_pred             hHHHHHhhhcCcch
Q 016814          271 ITPQVLEMINNPHY  284 (382)
Q Consensus       271 l~~~l~~~l~~~~~  284 (382)
                      +...+.+.+.|++.
T Consensus       666 frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  666 FRKQLEKVINDKHE  679 (929)
T ss_pred             HHHHHHHHhhhhhh
Confidence            44444555555553

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.45  E-value=9.4e-05  Score=63.69  Aligned_cols=179  Identities=21%  Similarity=0.205  Sum_probs=106.7

Q ss_pred             cCCCchHHHHHHHHhHHHHh-hhchhhh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC----hHHHHhhhHH
Q 016814          202 EDRHWRVRLAIIEYIPLLAS-QLGVGFF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG----PEWAMQHITP  273 (382)
Q Consensus       202 ~d~~~~vr~~~~~~l~~l~~-~~~~~~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~----~~~~~~~l~~  273 (382)
                      .+++...|..++..+..+.. ++-++++   ...+++.+.+.++-...+-+..|+++++-++-.+|    .+.+.+.+.|
T Consensus        53 ~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~  132 (309)
T PF05004_consen   53 TEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKP  132 (309)
T ss_pred             HhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHH
Confidence            45556677777766665543 2223332   23566666676766555566667777777776665    1345566777


Q ss_pred             HHHhhhcCcc--hHHHHHHHHHHHHhccccChh-hhhh---hhHHHHHh--hcc-C---------CCccHHHHHHHHHHH
Q 016814          274 QVLEMINNPH--YLYRMTILRAISLLAPVMGSE-ITCS---RLLPVVIN--ASK-D---------RVPNIKFNVAKVLQS  335 (382)
Q Consensus       274 ~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~-~~~~---~~l~~l~~--~l~-d---------~~~~vR~~a~~~l~~  335 (382)
                      .+...+.|..  ...|..++.+++.++-..+.+ .-..   ..+..++.  ..+ |         +++.+..+|+.+.+.
T Consensus       133 ~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~l  212 (309)
T PF05004_consen  133 VLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWAL  212 (309)
T ss_pred             HHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHH
Confidence            7777777654  456677777776655433322 1112   23332211  111 1         124578888888888


Q ss_pred             HhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          336 LIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       336 i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      +...++..   ......+|.|..++..++.+||.+|.++|+.+.....
T Consensus       213 Llt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  213 LLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            87766653   2334567777777777788888888888887766543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=0.001  Score=62.56  Aligned_cols=183  Identities=15%  Similarity=0.161  Sum_probs=131.3

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChh----hhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcc---cc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ----DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP---TR   73 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~---~~   73 (382)
                      |+.|-...++.....|+.-+..+...-..+    .-.+.+.|.+..++++ .+..+-..||++|..+++.++...   +.
T Consensus       173 L~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a~vV~  252 (1051)
T KOG0168|consen  173 LQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSAIVVD  252 (1051)
T ss_pred             HHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhheeec
Confidence            445555556666666554444443322221    1245688999998875 478999999999999999998742   23


Q ss_pred             cchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--H
Q 016814           74 MDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T  150 (382)
Q Consensus        74 ~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~  150 (382)
                      ...+|.+.+-+. =+.-.|-+.++++|..+.+..+.......-+..+..++.=-+..+++.|+.....+|+.+..+.  +
T Consensus       253 ~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~  332 (1051)
T KOG0168|consen  253 EHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHF  332 (1051)
T ss_pred             ccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchH
Confidence            458898876554 4567899999999999998877765444444444444443456788888888888998887654  3


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .-..+|.++.++...+..+-+.++.++.+++...
T Consensus       333 v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f  366 (1051)
T KOG0168|consen  333 VMEALPLLTPLLSYQDKKPIESVCICLTRIADGF  366 (1051)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhc
Confidence            4577899999999999999999999998887654

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=98.42  E-value=0.00034  Score=60.29  Aligned_cols=202  Identities=15%  Similarity=0.140  Sum_probs=140.2

Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhh-hchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----hhhhHHH
Q 016814          160 SLLKDEFPDVRLNIISKLDQVNQV-IGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----VGFFDDK  231 (382)
Q Consensus       160 ~~l~d~~~~vr~~~~~~l~~~~~~-~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----~~~~~~~  231 (382)
                      ..+.+.....|..++..+..+... +-.+.+   ...++..+...++....+-+..+++.++.++-.+|    .+.+.+.
T Consensus        50 d~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~  129 (309)
T PF05004_consen   50 DLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEE  129 (309)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHH
Confidence            334566788999998888776533 222222   25677888888877766777788888998887766    3445567


Q ss_pred             HHHHHHHHhccch--hHHHHHHHHHHHHHHHHhChHH-HHh---hhHHHHHh--hhc-C---------cchHHHHHHHHH
Q 016814          232 LGALCMQWLQDKV--YSIRDAAANNLKRLAEEFGPEW-AMQ---HITPQVLE--MIN-N---------PHYLYRMTILRA  293 (382)
Q Consensus       232 l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~~~~~-~~~---~l~~~l~~--~l~-~---------~~~~~r~~a~~~  293 (382)
                      +.|.+.+.+.|..  ..+|.+++.+++-.+...+.+. -..   ..+..++.  ..+ +         ++..+..+|+.+
T Consensus       130 ~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  130 LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            8899999988864  4678888888888876554421 111   12221111  111 1         135789999999


Q ss_pred             HHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH------HHHHhHHHHHHHhcCCCC
Q 016814          294 ISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIRPCLVELTEDPD  361 (382)
Q Consensus       294 l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~------~~~~~i~~~l~~l~~d~~  361 (382)
                      .+.+...++..   ...+..+|.|...|.+++.+||.+|-++|..+++.....      .....+...+..+..|..
T Consensus       210 W~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~~~~~~~~~~~~~l~~~l~~La~dS~  286 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARDHEEDFLYEDMEELLEQLRELATDSS  286 (309)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHHHhcc
Confidence            99998887763   345678899999999999999999999999998765431      234667778888877753

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=7.4e-05  Score=69.91  Aligned_cols=181  Identities=19%  Similarity=0.165  Sum_probs=130.4

Q ss_pred             hhhhcCCCchHHHHHHHHHHHhhccccChH--hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814          119 VKELSSDSSQHVRSALASVIMGMAPLLGKD--ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  196 (382)
Q Consensus       119 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~  196 (382)
                      ....+.|+.+.+|..++..+..+.+.-.+.  .....++.++.+.++|+++.|--++++.+..+++.++     +.++|.
T Consensus       732 ai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~-----e~il~d  806 (982)
T KOG4653|consen  732 AISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYP-----EDILPD  806 (982)
T ss_pred             HHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcc-----hhhHHH
Confidence            334567888899999999999988633222  2347888999999999999999999998888888765     567777


Q ss_pred             HHHHh----cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC---hHHH
Q 016814          197 IVELA----EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG---PEWA  267 (382)
Q Consensus       197 l~~~~----~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~---~~~~  267 (382)
                      +.+.-    +....+.|..+=+++..++...|+-.  +...++..++....|++.+-|..++..+|.++....   .+++
T Consensus       807 L~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  807 LSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            76632    12213344444477777777777533  235677888888899999999999999999987653   3444


Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814          268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  304 (382)
Q Consensus       268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  304 (382)
                      .+.+...+...-.|....+|.+|+..+..+....|.+
T Consensus       887 ~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~d  923 (982)
T KOG4653|consen  887 HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGED  923 (982)
T ss_pred             HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchh
Confidence            4433333333335778999999999999998877743

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.41  E-value=4.3e-05  Score=70.22  Aligned_cols=261  Identities=14%  Similarity=0.080  Sum_probs=155.5

Q ss_pred             hHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           76 LVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        76 ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      +...+.+.+.+. ++.||..++-.||-.+-.-...    .+...+++.+...+.-.-+++..++|-+.-.....    ..
T Consensus       414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~~----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~~~----ea  485 (929)
T KOG2062|consen  414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSANE----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTANQ----EA  485 (929)
T ss_pred             HHHHHHHHHHhccchhhhhhhhhhccchhcccccH----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcCcH----HH
Confidence            445555555443 4566777666655432221222    34455555554444444455555555544222222    22


Q ss_pred             HHHHHHhhcC-CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          155 LPIFLSLLKD-EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       155 ~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      +.-+.....+ ..+.+.++..-.+.-+.  +|.+   +..-|.+.+++.|+++-.|...+-.+..--..-|...    .+
T Consensus       486 iedm~~Ya~ETQHeki~RGl~vGiaL~~--ygrq---e~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GTgnnk----ai  556 (929)
T KOG2062|consen  486 IEDMLTYAQETQHEKIIRGLAVGIALVV--YGRQ---EDADPLIKELLRDKDPILRYGGMYTLALAYVGTGNNK----AI  556 (929)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHhHHHHH--hhhh---hhhHHHHHHHhcCCchhhhhhhHHHHHHHHhccCchh----hH
Confidence            2222233333 34555555554443332  2222   3456778888899999999988877765433233332    22


Q ss_pred             HHHHH-HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814          234 ALCMQ-WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLL  311 (382)
Q Consensus       234 ~~l~~-~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l  311 (382)
                      ..+.+ ..+|.+..||.+|.-++|.++..-      ....|...++|. +-|+.||..++.+++..+...|..    ..+
T Consensus       557 r~lLh~aVsD~nDDVrRaAVialGFVl~~d------p~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~----eAi  626 (929)
T KOG2062|consen  557 RRLLHVAVSDVNDDVRRAAVIALGFVLFRD------PEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLK----EAI  626 (929)
T ss_pred             HHhhcccccccchHHHHHHHHHheeeEecC------hhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcH----HHH
Confidence            23333 368999999999999999887431      224455556555 456999999999999988777765    233


Q ss_pred             HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhcCCCCcc
Q 016814          312 PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDVD  363 (382)
Q Consensus       312 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~~  363 (382)
                      ..+-.+.+|++.=||+.|+-+++.|.....+..  -...+...+.+...|.+.+
T Consensus       627 ~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dKhEd  680 (929)
T KOG2062|consen  627 NLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDKHED  680 (929)
T ss_pred             HHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhhhhH
Confidence            445556779888899999999999876554321  2345666677777776655

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=98.41  E-value=3.2e-05  Score=67.43  Aligned_cols=193  Identities=13%  Similarity=0.155  Sum_probs=129.9

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH-
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE-  109 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~-  109 (382)
                      +.+...+.+.-.+....-|+.+...|..+...-+-   +.+..+++..+++.+.| .+...|+.|++.|..+++.-... 
T Consensus       286 ~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l  365 (516)
T KOG2956|consen  286 ALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARL  365 (516)
T ss_pred             HHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhh
Confidence            44555556665665667788887766655432111   22345688888899998 67889999999999988765443 


Q ss_pred             -HHHHhhhHhhhhhcCCCchHHHHHHHHH-HHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814          110 -LAIQHILPCVKELSSDSSQHVRSALASV-IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~-l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~  187 (382)
                       ...+..+-.+.+...|..+.|-..|.+. +..++.+.+-.. ...+-|.+..    .+...-..+++.+.++++.+..+
T Consensus       366 ~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~-I~~i~~~Ilt----~D~~~~~~~iKm~Tkl~e~l~~E  440 (516)
T KOG2956|consen  366 FDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC-IVNISPLILT----ADEPRAVAVIKMLTKLFERLSAE  440 (516)
T ss_pred             hchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH-HHHHhhHHhc----CcchHHHHHHHHHHHHHhhcCHH
Confidence             1123445566667777777665555554 444555555332 2344444443    45666667888889999888887


Q ss_pred             hH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814          188 LL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  232 (382)
Q Consensus       188 ~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  232 (382)
                      .+   ...+.|.+.+..++.+..||++++.+|-.+...+|.+.+.+++
T Consensus       441 eL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL  488 (516)
T KOG2956|consen  441 ELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHL  488 (516)
T ss_pred             HHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHh
Confidence            65   3556788888888999999999999999999999976555433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.40  E-value=0.00013  Score=68.38  Aligned_cols=220  Identities=12%  Similarity=0.154  Sum_probs=151.7

Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      ......+.|+.+.+|..++..+..+.+.-.+.  ...+.++......++|++..|--++++.+..+++..+.     .++
T Consensus       730 qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e-----~il  804 (982)
T KOG4653|consen  730 QEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPE-----DIL  804 (982)
T ss_pred             HHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcch-----hhH
Confidence            33344566778888888888888887632222  22366888899999999999999999988888876444     344


Q ss_pred             HHHHH-Hh---ccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC--hhh
Q 016814          234 ALCMQ-WL---QDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG--SEI  305 (382)
Q Consensus       234 ~~l~~-~l---~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~--~~~  305 (382)
                      |-+.. +.   +-+..+-|-..-+++.+++...|.=  .+...++..++....+++...|.+++..++.++....  ...
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd  884 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSD  884 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhH
Confidence            44443 22   2222344444458888888888762  3566889999999999988899999999999876543  233


Q ss_pred             hhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHHHHH------HhHHHHHHHh-cCCCCccHHhHHHHHHHHHHH
Q 016814          306 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE------KTIRPCLVEL-TEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       306 ~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~~~~------~~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +..+++..++.. -.|....+|.+|+..+..+....|.+...      -.....+... -.+++..+|..|..++..+..
T Consensus       885 ~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei~a  964 (982)
T KOG4653|consen  885 FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEIQA  964 (982)
T ss_pred             HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHH
Confidence            444555544443 45888999999999999998877754211      1222223332 345677799999999998887


Q ss_pred             Hhc
Q 016814          378 VMM  380 (382)
Q Consensus       378 ~~~  380 (382)
                      ++.
T Consensus       965 ~l~  967 (982)
T KOG4653|consen  965 ALE  967 (982)
T ss_pred             HHH
Confidence            764

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=6.7e-05  Score=68.62  Aligned_cols=146  Identities=22%  Similarity=0.212  Sum_probs=111.6

Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhh----h
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN----Q  182 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~----~  182 (382)
                      -.-|.+...++-.+..||..|+..+-.+-+..+++.       ..+.=...+.++++|+.+.||..+...+.++.    .
T Consensus       174 L~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe  253 (1005)
T KOG1949|consen  174 LYKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWE  253 (1005)
T ss_pred             HHhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHH
Confidence            345677788899999999999999999888777543       23444567778999999999999887776653    3


Q ss_pred             hhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       183 ~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      .+++.-+.+.+-..+-.+..|....||.+..+.+..++..-......++++|.+...+.|++..||-++.+.+..+-
T Consensus       254 ~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik  330 (1005)
T KOG1949|consen  254 MIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIK  330 (1005)
T ss_pred             HcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHH
Confidence            44544443333334445567888899999999999998655555556789999999999999999999998887763

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=98.36  E-value=0.0006  Score=59.98  Aligned_cols=364  Identities=13%  Similarity=0.085  Sum_probs=199.3

Q ss_pred             CchHHHHHHHHHHHHHHhccChh---hhhhhhhhh--------hhh-hccCCCHHHHHHHHHHHHHHHHHh---------
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPV--------IVN-FSQDKSWRVRYMVANQLYELCEAV---------   67 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~--------l~~-~~~d~~~~vR~~a~~~l~~l~~~~---------   67 (382)
                      -+..||..|+.++..+.+.++..   .+|..++|-        ++. .++|++++.|..+.+.+..+....         
T Consensus         8 ~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~   87 (728)
T KOG4535|consen    8 YQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAED   87 (728)
T ss_pred             HHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhc
Confidence            35678999999999888877653   234444432        222 358999999999999998876532         


Q ss_pred             -CCcccccc-------hH---HHHH-HhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHH
Q 016814           68 -GPEPTRMD-------LV---PAYV-RLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVR  131 (382)
Q Consensus        68 -~~~~~~~~-------ll---~~l~-~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr  131 (382)
                       ++..+...       +.   -.++ -+....++++-..+++++..+....+-+    .+.-+++..++.+++++++.||
T Consensus        88 ~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~  167 (728)
T KOG4535|consen   88 TSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVR  167 (728)
T ss_pred             cCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence             22221110       11   1111 1223344566666667777666554433    2334566666677777777777


Q ss_pred             HHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHH------HHHhhHHhhhh-------hchhhH-------h-
Q 016814          132 SALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLN------IISKLDQVNQV-------IGIDLL-------S-  190 (382)
Q Consensus       132 ~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~------~~~~l~~~~~~-------~~~~~~-------~-  190 (382)
                      .++...++.+..       .....|-+...+.-.... |..      ......++...       .|.+.-       . 
T Consensus       168 vs~l~~~~~~v~-------t~~~~pei~~~~~~~~s~-~n~~~~h~s~~~~~~~l~~~~~~~e~~~~~~~~~~~~~~~i~  239 (728)
T KOG4535|consen  168 VSSLTLLGAIVS-------THAPLPEVQLLLQQPCSS-SNSATPHLSPPDWWKKLPAGPSLEETSVSSPKGSSEPCWLIR  239 (728)
T ss_pred             hHHHHHHHHHHh-------cCCCCHHHHHHhcCCCcc-ccccCCCCCChHHHHhcCCCchhhhhccCCccCCCCCcceee
Confidence            777777766652       234555555544321100 000      01111111110       000000       0 


Q ss_pred             --hhHHHH----------HHHHhcC--CCchHHHHHHHHhHHHHhhhchhh-hHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814          191 --QSLLPA----------IVELAED--RHWRVRLAIIEYIPLLASQLGVGF-FDDKLGALCMQWLQDKVYSIRDAAANNL  255 (382)
Q Consensus       191 --~~llp~----------l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~~~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l  255 (382)
                        ..+.|.          ...+++.  ....+|..+.+.+..++..+|... +.-++...+-..+.+..+.+..-+...+
T Consensus       240 ~~~~i~~~~~~~s~~~~~~~~~~~~~~~ps~~rle~~qvl~~~a~~~~~~~~~~~~l~RvI~~~~~~~~p~~~l~~a~ll  319 (728)
T KOG4535|consen  240 LCISIVVLPKEDSCSGSDAGSAAGSTYEPSPMRLEALQVLTLLARYFSMTQAYLMELGRVICKCMGEADPSIQLHGAKLL  319 (728)
T ss_pred             eeeeeeecCCccccchhhHHhhhcCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCChHHHHHHHHHH
Confidence              001110          1111111  123588899999999998887533 2345777777788899999999999999


Q ss_pred             HHHHHHhChH----HHHhhhHHH-HH----------hhhcCcchHHHHHHHHHHHHhccc--cChhhhhhhhHHHHHhhc
Q 016814          256 KRLAEEFGPE----WAMQHITPQ-VL----------EMINNPHYLYRMTILRAISLLAPV--MGSEITCSRLLPVVINAS  318 (382)
Q Consensus       256 ~~~~~~~~~~----~~~~~l~~~-l~----------~~l~~~~~~~r~~a~~~l~~l~~~--~~~~~~~~~~l~~l~~~l  318 (382)
                      .++....+.+    .....+... +.          ..+.........+++.++..++..  .+-..-.....+.++..+
T Consensus       320 ~~lg~~lv~~~~P~~~k~~~q~~~fw~~~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~lpn~~~T~~~~Fl~GC  399 (728)
T KOG4535|consen  320 EELGTGLIQQYKPDSTKAPDQRAPFWTMMLNGPLPRALYDSEHPTLQASACDALSSILPEAFSNLPNDRQTLCITFLLGC  399 (728)
T ss_pred             HHHHHHHhhhcCCCcccchhhhccHHHHHccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcCCCCcchhhhHHHHhcc
Confidence            9988776532    111111111 11          111122345666777777776532  222222345666666666


Q ss_pred             cCC-CccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          319 KDR-VPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       319 ~d~-~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .|. +.-+|..|+++++...-+.+..   .+.......+...+.|..-++|..++.+++.|.+.+-
T Consensus       400 ~d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~  465 (728)
T KOG4535|consen  400 NDSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALI  465 (728)
T ss_pred             cchHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHH
Confidence            643 4448888888887766554432   2333344444445566666777777777777766653

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=98.36  E-value=0.0027  Score=60.26  Aligned_cols=177  Identities=11%  Similarity=0.078  Sum_probs=123.0

Q ss_pred             hcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHh
Q 016814          201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLE  277 (382)
Q Consensus       201 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~  277 (382)
                      ..|..+-+|..+++.+...++.---..+.+.++..+.++..+.+.++-....+++..+++ +.+++   ..+.+.|.++.
T Consensus       500 ~~~~~~~~ki~a~~~~~~~~~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~-~dpef~as~~skI~P~~i~  578 (1005)
T KOG2274|consen  500 TMDVPPPVKISAVRAFCGYCKVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVK-LDPEFAASMESKICPLTIN  578 (1005)
T ss_pred             ccCCCCchhHHHHHHHHhccCceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhc-cChhhhhhhhcchhHHHHH
Confidence            356777788888888777663222223457788888899899999999888999988887 34433   23457776665


Q ss_pred             hhc--CcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCC----ccHHHHHHHHHHHHhhhhhH---HHHHH
Q 016814          278 MIN--NPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV----PNIKFNVAKVLQSLIPIVDQ---SMVEK  347 (382)
Q Consensus       278 ~l~--~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~----~~vR~~a~~~l~~i~~~~~~---~~~~~  347 (382)
                      .+.  ..++.+-..+-.++..+++.-. ..++.+..+|.++..+.-+.    +.....++..|..+.+.-.+   +.+..
T Consensus       579 lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~  658 (1005)
T KOG2274|consen  579 LFLKYSEDPQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLIC  658 (1005)
T ss_pred             HHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHH
Confidence            542  2234566666666666654321 11367889999999887766    55777888888877765443   34567


Q ss_pred             hHHHHHHHh-cCCCCccHHhHHHHHHHHHHHH
Q 016814          348 TIRPCLVEL-TEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       348 ~i~~~l~~l-~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +..|.+.++ ++..|..+-.++.++++.+..+
T Consensus       659 ~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  659 YAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             HHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence            888888884 5666778888899999887765

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.35  E-value=0.0022  Score=59.14  Aligned_cols=141  Identities=13%  Similarity=0.107  Sum_probs=102.9

Q ss_pred             HHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh
Q 016814          231 KLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI  305 (382)
Q Consensus       231 ~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~  305 (382)
                      .+.|.+.....+    .++.+..+|.-++.++.- ++.++. ..=+|.++..+. ++++.+|..|+-.++.+.-++..  
T Consensus       892 ~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMC-lS~~fc-~ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~--  967 (1128)
T COG5098         892 NFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMC-LSFEFC-SEHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNT--  967 (1128)
T ss_pred             hhhHHHHHHhccccccCCHHHHHHHHHHHHHHHH-HhHHHH-HHHHHHHHHHHhhCCCcceeccceeeccccceehhh--
Confidence            355666666655    678888888888888764 344443 446677777665 88999999999999988766654  


Q ss_pred             hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +....-..+...+.|.+..||..|+-++..+.-.  .+.-...-++.+..++.|+|.++...|...+-.++.
T Consensus       968 ~~de~t~yLyrrL~De~~~V~rtclmti~fLila--gq~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~ 1037 (1128)
T COG5098         968 TADEHTHYLYRRLGDEDADVRRTCLMTIHFLILA--GQLKVKGQLGKMALLLTDEDAEISDMARHFFTQIAK 1037 (1128)
T ss_pred             hhHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHc--cceeeccchhhhHhhccCCcchHHHHHHHHHHHHHh
Confidence            4566777888999999999999999998877532  111123445677778889999888877777766654

>KOG1949 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00038  Score=63.97  Aligned_cols=146  Identities=24%  Similarity=0.223  Sum_probs=113.7

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc----cc
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LAIQHILPCVKELSSDSSQHVRSALASVIMGMA----PL  144 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~----~~  144 (382)
                      +-|.+.+.++-++..||..|+..+..+-...+++       .+.++-...+.+++.|+-+.||+.++.-+..+.    ..
T Consensus       175 ~~p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~  254 (1005)
T KOG1949|consen  175 YKPILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEM  254 (1005)
T ss_pred             HhHHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHH
Confidence            4567778889999999999999998886655544       234445577888999999999999887665543    45


Q ss_pred             cChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814          145 LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  221 (382)
Q Consensus       145 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  221 (382)
                      +++....+.+-.++.++..|.+.+||..+.+.+..+...--.....+.++|.+...+.|++.+||.++...+..+-.
T Consensus       255 iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~  331 (1005)
T KOG1949|consen  255 IPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKA  331 (1005)
T ss_pred             cCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHh
Confidence            56665555555666777888999999999999998876543334448899999999999999999999998877644

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=98.33  E-value=0.00045  Score=64.04  Aligned_cols=146  Identities=14%  Similarity=0.185  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHhccc--hhHHHHHHHHHH---HHHHHHhChHH---HHhhhHHHHHhhhc--------CcchHHHHHHHHH
Q 016814          230 DKLGALCMQWLQDK--VYSIRDAAANNL---KRLAEEFGPEW---AMQHITPQVLEMIN--------NPHYLYRMTILRA  293 (382)
Q Consensus       230 ~~l~~~l~~~l~d~--~~~vr~~a~~~l---~~~~~~~~~~~---~~~~l~~~l~~~l~--------~~~~~~r~~a~~~  293 (382)
                      +..+.++...+.++  +.++|..+++.+   ......++...   +...+.......+.        ..+...|..+.++
T Consensus       318 ~~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~  397 (501)
T PF13001_consen  318 PNILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET  397 (501)
T ss_pred             ccHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence            34556666666666  678899999988   77777766543   22233333333332        2346799999999


Q ss_pred             HHHhccccChhh-hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHH-----HHhHHH-HHHHhcCCCCccHHh
Q 016814          294 ISLLAPVMGSEI-TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV-----EKTIRP-CLVELTEDPDVDVRF  366 (382)
Q Consensus       294 l~~l~~~~~~~~-~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~-----~~~i~~-~l~~l~~d~~~~vr~  366 (382)
                      +|.+++....-. -.-.++..++..+.++.+++|.+.-++|+.+..++....-     ....+. .+.....+....+|.
T Consensus       398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~  477 (501)
T PF13001_consen  398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY  477 (501)
T ss_pred             HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence            999998776542 2245677778888899999999999999999988764211     122222 222244556677888


Q ss_pred             HHHHHHHHH
Q 016814          367 FATQAIQSI  375 (382)
Q Consensus       367 ~a~~al~~~  375 (382)
                      .|.+-...+
T Consensus       478 ~avk~an~~  486 (501)
T PF13001_consen  478 AAVKYANAC  486 (501)
T ss_pred             HHHHHHHHh
Confidence            887766544

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.31  E-value=0.00044  Score=57.95  Aligned_cols=226  Identities=11%  Similarity=0.085  Sum_probs=130.2

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhh----hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-cccccchH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EPTRMDLV   77 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll   77 (382)
                      ..-++++++.+|..|+..++.+...++++..    ...+..++.+-+.|.  ..=..+++++..+.+.-.- ......++
T Consensus         5 g~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~~~~~~~~~~~~~i~   82 (262)
T PF14500_consen    5 GEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALVKMKNFSPESAVKIL   82 (262)
T ss_pred             hhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHHhCcCCChhhHHHHH
Confidence            3457788999999999999999998886433    344556666666433  3333448888877732211 11122344


Q ss_pred             HHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814           78 PAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDATIE  152 (382)
Q Consensus        78 ~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  152 (382)
                      ..+.+..+-+  ....|..+.+.+..+.......  ..-..++..+.+.+ ..++|.--..+.+.+..+...++.....+
T Consensus        83 ~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e  162 (262)
T PF14500_consen   83 RSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEFAE  162 (262)
T ss_pred             HHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchhHH
Confidence            4444433322  3568999999998887765432  11234455555544 35667666667777776666555443445


Q ss_pred             hhHHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          153 QLLPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       153 ~l~~~l~~~l--------~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      .+++.+.-..        +|+..-.|.....++.....  +...+.+..+|.+.+-+.+....++..+++.+...+..+|
T Consensus       163 ~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~--s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  163 DLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLS--STPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhc--CcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHCC
Confidence            5555444331        23222223333333322211  1223446677777777777777777777777777777777


Q ss_pred             hhhhHHHH
Q 016814          225 VGFFDDKL  232 (382)
Q Consensus       225 ~~~~~~~l  232 (382)
                      .....+.+
T Consensus       241 ~~~~~~~~  248 (262)
T PF14500_consen  241 ADSLSPHW  248 (262)
T ss_pred             HHHHHHHH
Confidence            65444433

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.31  E-value=0.0027  Score=58.11  Aligned_cols=134  Identities=18%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             chhHHHHHHHHHHHHHHHHh---ChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHh
Q 016814          243 KVYSIRDAAANNLKRLAEEF---GPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVIN  316 (382)
Q Consensus       243 ~~~~vr~~a~~~l~~~~~~~---~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~  316 (382)
                      .+..++.+|+.++..+....   ....-..++...+.+.+.||...+.-+++.++..+.=.++.   .......+..+..
T Consensus       389 kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s  468 (678)
T KOG1293|consen  389 KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILES  468 (678)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHH
Confidence            45667777777766665432   22222345666777788999999999999999998766653   2445667888999


Q ss_pred             hccCCCccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          317 ASKDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       317 ~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ++.++.+++|..+.++|-.+.-.....    ....-....+..+.+||++.|+..+.+.+..+.
T Consensus       469 ~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~  532 (678)
T KOG1293|consen  469 MLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLT  532 (678)
T ss_pred             HhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhh
Confidence            999999999999999998776443332    122334455566889999999998888887664

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.29  E-value=1.3e-06  Score=54.12  Aligned_cols=52  Identities=21%  Similarity=0.105  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          284 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                      |.+|..|+.+++.++...+..  .+...++|.+...++|+++.||..|+.+|+.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            566777777776665444432  4556666666666666666677777666664

...

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=98.27  E-value=0.00099  Score=55.84  Aligned_cols=227  Identities=15%  Similarity=0.163  Sum_probs=141.2

Q ss_pred             hhhhcCCCchHHHHHHHHHHHhhccccChHh----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hchhhHhhh
Q 016814          119 VKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGIDLLSQS  192 (382)
Q Consensus       119 l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~--~~~~~~~~~  192 (382)
                      +...+.++++.+|..+...|..+...++++.    ..+.++.++.+.+.| ...+.. ++.++..+.+.  .+.+.. ..
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D-~~~~~~-~l~gl~~L~~~~~~~~~~~-~~   80 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDD-HACVQP-ALKGLLALVKMKNFSPESA-VK   80 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhcc-HhhHHH-HHHHHHHHHhCcCCChhhH-HH
Confidence            4456677777778877777777776666432    235666777777754 333333 36666665532  222222 33


Q ss_pred             HHHHHHHHh--cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChHHH
Q 016814          193 LLPAIVELA--EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPEWA  267 (382)
Q Consensus       193 llp~l~~~~--~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~~~  267 (382)
                      ++..+.+-.  +......|..+.+.+..+........  ..+.++..+.+.+. ..|++--..+.+.+..+...+..+.+
T Consensus        81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~~~  160 (262)
T PF14500_consen   81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDISEF  160 (262)
T ss_pred             HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccchh
Confidence            433333322  22234688899998888877654322  22344555555444 56788888888888888888876666


Q ss_pred             HhhhHHHHHhhh--------cCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          268 MQHITPQVLEMI--------NNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       268 ~~~l~~~l~~~l--------~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .+.++..+.-++        +|+..-.|+--...+..   ++. ...+.+..+|.++.-|.++.+.++.-++++|.....
T Consensus       161 ~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~---cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~  237 (262)
T PF14500_consen  161 AEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRN---CLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIE  237 (262)
T ss_pred             HHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHH---HhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            666777666554        23322233333333322   222 234678899999999999999999999999999999


Q ss_pred             hhhHHHHHHhHHH
Q 016814          339 IVDQSMVEKTIRP  351 (382)
Q Consensus       339 ~~~~~~~~~~i~~  351 (382)
                      .+|.+.....+.+
T Consensus       238 ~y~~~~~~~~~~~  250 (262)
T PF14500_consen  238 NYGADSLSPHWST  250 (262)
T ss_pred             HCCHHHHHHHHHH
Confidence            9997755544433

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=98.25  E-value=0.0034  Score=60.00  Aligned_cols=99  Identities=17%  Similarity=0.140  Sum_probs=74.1

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-cccchHHHHHHh
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-TRMDLVPAYVRL   83 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~~~ll~~l~~~   83 (382)
                      +-.|+...||+.|.+.+.....+.......+..+.+++.++.|.-..+|+.++..|+.+...-+.-. ..+.-+-.++..
T Consensus       585 ~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~  664 (1529)
T KOG0413|consen  585 LSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISM  664 (1529)
T ss_pred             hccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHH
Confidence            3447788899999999999988887766667778999999999999999999999998764322211 112234556667


Q ss_pred             cCCCcHHHHHHHHHHHHHHH
Q 016814           84 LRDNEAEVRIAAAGKVTKFC  103 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~  103 (382)
                      ++|.+..|.+.|...+..+.
T Consensus       665 ~~d~es~v~e~a~~~i~k~l  684 (1529)
T KOG0413|consen  665 LNDTESDVTEHARKLIMKVL  684 (1529)
T ss_pred             HhccHHHHHHHHHHHHHHHH
Confidence            78888888888877665543

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.19  E-value=0.0021  Score=60.31  Aligned_cols=253  Identities=15%  Similarity=0.145  Sum_probs=157.9

Q ss_pred             chHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHHHhCCc---c----------
Q 016814           10 QDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPE---P----------   71 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~---~----------   71 (382)
                      .+.-|+.|.+.+..+++++..   ..+..++-..+.++..+  .+|.-+..++..+..++...+..   .          
T Consensus       375 vdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvdv~  454 (960)
T KOG1992|consen  375 VDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVDVV  454 (960)
T ss_pred             cchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeeccccccHH
Confidence            445688899999999998844   22334444455555554  47888888988888888654321   1          


Q ss_pred             --cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-----
Q 016814           72 --TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-----  144 (382)
Q Consensus        72 --~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-----  144 (382)
                        +...++|.+..--..+.|.++..+++-+..+=+..+++... .++|.+...++.++.-|-.-|+.++..+...     
T Consensus       455 ~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm-~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~~  533 (960)
T KOG1992|consen  455 DFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLM-ALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENSN  533 (960)
T ss_pred             HHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHH-HHHHHHHHhccCcchHHHHHHHHHHHhccccccCcc
Confidence              11234444433222456778888888877776677776544 5779999999999999999999999987533     


Q ss_pred             ---cChHhHHHhhHHHHHHhh----c---CCChHHHHHHHHhhHHhhhhh---chhhHhhhHHHHHHHHhcCC-CchHHH
Q 016814          145 ---LGKDATIEQLLPIFLSLL----K---DEFPDVRLNIISKLDQVNQVI---GIDLLSQSLLPAIVELAEDR-HWRVRL  210 (382)
Q Consensus       145 ---~~~~~~~~~l~~~l~~~l----~---d~~~~vr~~~~~~l~~~~~~~---~~~~~~~~llp~l~~~~~d~-~~~vr~  210 (382)
                         ++++...+.+.+.+..++    .   .+++.+-++....+.-.-+..   ++. ....+...+.+..+++ ++.--.
T Consensus       534 ~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~-~l~~Lteiv~~v~KNPs~P~fnH  612 (960)
T KOG1992|consen  534 AKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPE-LLRQLTEIVEEVSKNPSNPQFNH  612 (960)
T ss_pred             ccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhH-HHHHHHHHHHHHhcCCCCchhHH
Confidence               333333344444555544    1   234444444333333221111   111 1122333333344444 455556


Q ss_pred             HHHHHhHHHHhhhchh------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814          211 AIIEYIPLLASQLGVG------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  264 (382)
Q Consensus       211 ~~~~~l~~l~~~~~~~------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  264 (382)
                      -+.+.++.+....+..      .+...++|.+...+..+-.+.---+.+.++.+++..+.
T Consensus       613 YLFEsi~~li~~t~~~~~~~vs~~e~aL~p~fq~Il~eDI~EfiPYvfQlla~lve~~~~  672 (960)
T KOG1992|consen  613 YLFESIGLLIRKTCKANPSAVSSLEEALFPVFQTILSEDIQEFIPYVFQLLAVLVEHSSG  672 (960)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            6777777776655432      36788999999999888888888888999999887765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=98.19  E-value=3e-06  Score=52.52  Aligned_cols=52  Identities=25%  Similarity=0.230  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814           89 AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMG  140 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~  140 (382)
                      |.||.+|+.+|+.++...+..  .+...++|.+..+++|+++.||..++.+|+.
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~   54 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN   54 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence            345555555555443322221  2334455555555555555555555555543

...

>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.0061  Score=57.43  Aligned_cols=364  Identities=16%  Similarity=0.204  Sum_probs=198.9

Q ss_pred             chHHHHHHHHHHHHHHh-ccCh---------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814           10 QDSVRLLAVEGCAALGK-LLEP---------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA   79 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~-~~~~---------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~   79 (382)
                      ++++|.+|+-.+....+ +..+         +...+.+...+..+.-.....+....-++++-+++.--++. +..++|-
T Consensus        52 d~~~r~aaav~fKN~iKr~W~~~~~~~~~i~~~~~e~ikslIv~lMl~s~~~iQ~qlseal~~Ig~~DFP~k-WptLl~d  130 (960)
T KOG1992|consen   52 DPQIRVAAAVYFKNYIKRNWIPAEDSPIKIIEEDREQIKSLIVTLMLSSPFNIQKQLSEALSLIGKRDFPDK-WPTLLPD  130 (960)
T ss_pred             ChhHHHHHHHHHHHHHHhccCcCCCCccccchhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhccccchh-hHHHHHH
Confidence            67889999988888877 3322         22234455555566656667888888888887774322222 5679999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-----HH--HHhhhH----hhhh-------hc----CCCc-----hHHHH
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----LA--IQHILP----CVKE-------LS----SDSS-----QHVRS  132 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----~~--~~~il~----~l~~-------~~----~d~~-----~~vr~  132 (382)
                      +...++..+..+-.+.+..-.++-+....+     .+  ....+.    .+..       +.    +|..     -.|..
T Consensus       131 L~~~ls~~D~~~~~gVL~tahsiFkr~R~efrSdaL~~EIK~vLd~f~~Plt~Lf~~t~~l~~~~~~~~~~l~~lf~vll  210 (960)
T KOG1992|consen  131 LVARLSSGDFNVINGVLVTAHSIFKRYRPEFRSDALWLEIKLVLDRFAEPLTDLFRKTMELIQRHANDAAALNILFGVLL  210 (960)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhhcccchhHHHHHHHHHH
Confidence            999998877777767666666666655433     11  011111    1111       11    2222     01222


Q ss_pred             HHHHHHHhhc-cccCh--HhHHHhhHHHHHHhhcC---------CCh----HHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814          133 ALASVIMGMA-PLLGK--DATIEQLLPIFLSLLKD---------EFP----DVRLNIISKLDQVNQVIGIDLLSQSLLPA  196 (382)
Q Consensus       133 ~a~~~l~~l~-~~~~~--~~~~~~l~~~l~~~l~d---------~~~----~vr~~~~~~l~~~~~~~~~~~~~~~llp~  196 (382)
                      ..++.+..+. +-++.  +...+..++.+.+++.-         +..    .+|...+..+.-....+. +.+ +.++|.
T Consensus       211 l~~klfysLn~QDiPEFFEdnm~~wM~~F~k~l~~~~p~le~~~ee~~~l~~lka~ICEi~~LY~~kYe-Eef-~~fl~~  288 (960)
T KOG1992|consen  211 LICKLFYSLNFQDIPEFFEDNMKTWMGAFHKLLTYDNPLLESDEEEATVLDKLKAQICEIFNLYATKYE-EEF-QPFLPD  288 (960)
T ss_pred             HHHHHHHhhhcccchHHHHhhHHHHHHHHHHHHhccCcccccCcccccHHHHHHHHHHHHHHHHHHhhH-HHH-HhhHHH
Confidence            2233333332 11121  11235566777777652         222    344444444443333322 222 333343


Q ss_pred             HH----HHhcCCCchHHH-----HHHHHhHHHHhhhc-----------------------------hhhhHHHHHHHHHH
Q 016814          197 IV----ELAEDRHWRVRL-----AIIEYIPLLASQLG-----------------------------VGFFDDKLGALCMQ  238 (382)
Q Consensus       197 l~----~~~~d~~~~vr~-----~~~~~l~~l~~~~~-----------------------------~~~~~~~l~~~l~~  238 (382)
                      +.    .++.+-.+..|.     .++..|..+++.-.                             .+.|.+.-+..+.+
T Consensus       289 fv~~~W~LL~~~s~~~kyD~Lvs~Al~FLt~V~~r~~y~~~F~~~~vl~~i~e~VvlpN~~lR~eDeElFED~pleYiRR  368 (960)
T KOG1992|consen  289 FVTATWNLLVSTSPDTKYDYLVSKALQFLTSVSRRPHYAELFEGENVLAQICEKVVLPNLILREEDEELFEDNPLEYIRR  368 (960)
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHhhhhhHhhhcchHHHHHHHHhhcccccccchhhHHHhccCHHHHHHH
Confidence            33    344433333332     33344444332111                             11122222333333


Q ss_pred             Hhccch-hHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhcccc-----C-----
Q 016814          239 WLQDKV-YSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVM-----G-----  302 (382)
Q Consensus       239 ~l~d~~-~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~-----~-----  302 (382)
                      -+.-.+ ..-|.+|+..+..+++.+....   +...+-..+.++-++|  +|.-+..+++.+..++..-     |     
T Consensus       369 DlEGsDvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn  448 (960)
T KOG1992|consen  369 DLEGSDVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYSKNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTN  448 (960)
T ss_pred             hcccCCcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCCCccccccchhhhhhHHHHhhcchhhcceeecc
Confidence            333222 2347778899999998884421   1121222222233344  6999999999998886431     1     


Q ss_pred             -----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          303 -----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       303 -----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                           .+++...++|.+..--..+.|-+|..+++-+-.+...++++ ....++|.+...+..+..-|-..|+.++..+-.
T Consensus       449 ~lvdv~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~-~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~  527 (960)
T KOG1992|consen  449 ELVDVVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKE-HLMALLPRLIRFLEAESRVVHSYAAIAIEKLLT  527 (960)
T ss_pred             ccccHHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChH-HHHHHHHHHHHhccCcchHHHHHHHHHHHhccc
Confidence                 12455666776665444456778888888888777777765 456788888888888888888888888877643

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.17  E-value=3.4e-06  Score=45.00  Aligned_cols=28  Identities=36%  Similarity=0.478  Sum_probs=15.9

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCR  104 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~  104 (382)
                      +|.+.++++|++|.||.+|+.+|+.+++
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            5555556666666666666666655554

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.14  E-value=0.00019  Score=64.52  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=79.2

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  151 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  151 (382)
                      ...+-.+++.+.+++..||..+++.+..+....++  +...+.++..+.+-+-|..+.||..|+.++..+-+.-+++.  
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee--  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE--  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH--
Confidence            34566667777888899999999999999888876  66677888888888889999999999999998876555432  


Q ss_pred             HhhHHHHHHhh-cCCChHHHHHHHHhhHH
Q 016814          152 EQLLPIFLSLL-KDEFPDVRLNIISKLDQ  179 (382)
Q Consensus       152 ~~l~~~l~~~l-~d~~~~vr~~~~~~l~~  179 (382)
                      ..+...+...+ +|++.+||..++..+..
T Consensus       168 n~~~n~l~~~vqnDPS~EVRr~allni~v  196 (885)
T COG5218         168 NRIVNLLKDIVQNDPSDEVRRLALLNISV  196 (885)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHeee
Confidence            23344444443 67889999988776643

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.13  E-value=0.0015  Score=65.64  Aligned_cols=327  Identities=12%  Similarity=0.113  Sum_probs=177.8

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChh-----hhhhhhhhhhhh----hc--cCCCHHHHHHHHHHHHHHHHHhC----
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQ-----DCVAHILPVIVN----FS--QDKSWRVRYMVANQLYELCEAVG----   68 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~~l~~----~~--~d~~~~vR~~a~~~l~~l~~~~~----   68 (382)
                      .|+++++-.||...+-++..+.+.+.|+     .....+..++..    +.  .++...-+...++.+..+...+-    
T Consensus        57 ~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~  136 (1266)
T KOG1525|consen   57 FLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLE  136 (1266)
T ss_pred             HHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeecc
Confidence            4688999999999999999998876552     122223333222    22  23333344555555655541111    


Q ss_pred             -CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814           69 -PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  145 (382)
Q Consensus        69 -~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  145 (382)
                       .+....++...+...+.++.+.--......+..+.....  +......++.-+..--.|....-+..+-..+...+..+
T Consensus       137 d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~  216 (1266)
T KOG1525|consen  137 DCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNL  216 (1266)
T ss_pred             chHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhh
Confidence             122234455666666655554433333333333322111  11122222222222234444444555544444444333


Q ss_pred             ChHhHHHhhHHHHHHhhc-CC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          146 GKDATIEQLLPIFLSLLK-DE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~-d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                      .     +.+-.++...+. +.  ...++.....-+-.+... .++.+ ..++|.|..-+..++..+|..+...++.+...
T Consensus       217 ~-----~~i~~f~~~~~~~~~s~~~~~~~~~he~i~~L~~~-~p~ll-~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~  289 (1266)
T KOG1525|consen  217 E-----DTIANFLNSCLTEYKSRQSSLKIKYHELILELWRI-APQLL-LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD  289 (1266)
T ss_pred             c-----hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHh-hHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc
Confidence            2     233333333322 11  123333333333333322 22333 67889998888999999999999999999876


Q ss_pred             hchhhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814          223 LGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       223 ~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  300 (382)
                      .+...+  .+.+...+...+.|.+.+||...+++.....-....-.-...+...+.....|.+.++|..++-...... .
T Consensus       290 ~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~-~  368 (1266)
T KOG1525|consen  290 KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVM-K  368 (1266)
T ss_pred             chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehh-H
Confidence            554444  3456777778889999999999999988887653221112223334444444544444443321111111 1


Q ss_pred             cChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814          301 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       301 ~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      +... +...++..+...+.|..+.||..|+..|.+++..
T Consensus       369 ~~l~-~~~~ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~  406 (1266)
T KOG1525|consen  369 FKLV-YIPLLLKLVAERLRDKKIKVRKQAMNGLAQLYKN  406 (1266)
T ss_pred             hhhh-hhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            1111 1222666677788899999999999999999985

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=98.11  E-value=0.0069  Score=63.56  Aligned_cols=304  Identities=12%  Similarity=0.108  Sum_probs=176.3

Q ss_pred             HHHHHHHHHHHHhccCh------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-c-----cccchHHHHH
Q 016814           14 RLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-P-----TRMDLVPAYV   81 (382)
Q Consensus        14 R~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~-----~~~~ll~~l~   81 (382)
                      |...++-+..++.+...      ..+|..+-+.+.+...+++..++..++..|.+++..+-+. .     +..+++..|.
T Consensus      1109 r~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe 1188 (1780)
T PLN03076       1109 RVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFV 1188 (1780)
T ss_pred             chhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHH
Confidence            66666667776665433      3445556666666555667889999999999998766542 2     2234666665


Q ss_pred             Hhc-CCCcHHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-cC---h--HhHHH
Q 016814           82 RLL-RDNEAEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LG---K--DATIE  152 (382)
Q Consensus        82 ~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~---~--~~~~~  152 (382)
                      ..+ +..+.+||+..++++.++....+...  -...++..+.....|.++.+-..+...+..+... ++   .  .....
T Consensus      1189 ~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~ 1268 (1780)
T PLN03076       1189 IVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFT 1268 (1780)
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHH
Confidence            544 44568999999999999887655431  0124556666666777777777777777665432 11   1  12334


Q ss_pred             hhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhh-----------------------------------chhhHhhhHHHH
Q 016814          153 QLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI-----------------------------------GIDLLSQSLLPA  196 (382)
Q Consensus       153 ~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~-----------------------------------~~~~~~~~llp~  196 (382)
                      .++..+.++.+.. +.++-..++..+..+...+                                   +.+......+|.
T Consensus      1269 DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pL 1348 (1780)
T PLN03076       1269 DCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPL 1348 (1780)
T ss_pred             HHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence            5666666665433 2333333333333221111                                   001111233455


Q ss_pred             HH---HHhcCCCchHHHHHHHHhHHHHhhhchh----hh----HHHHHHHHHHHhc----------------------cc
Q 016814          197 IV---ELAEDRHWRVRLAIIEYIPLLASQLGVG----FF----DDKLGALCMQWLQ----------------------DK  243 (382)
Q Consensus       197 l~---~~~~d~~~~vr~~~~~~l~~l~~~~~~~----~~----~~~l~~~l~~~l~----------------------d~  243 (382)
                      +.   .++.|+...||..++..|-.+....|..    .+    ...++|++..+-.                      +.
T Consensus      1349 L~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~e~ 1428 (1780)
T PLN03076       1349 LAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGELDQ 1428 (1780)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhh
Confidence            44   4467899999999999988887766643    32    2345565543210                      11


Q ss_pred             hhHHHHHHHHHHHHHHHHhCh-----HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHH
Q 016814          244 VYSIRDAAANNLKRLAEEFGP-----EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVI  315 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~-----~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~  315 (382)
                      +.++.+....++..++..+..     ..+.+.++..+...+..++..+-..+..++..+....|..   ..+.+++..+.
T Consensus      1429 ~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~~F~~~~W~~i~~~~~ 1508 (1780)
T PLN03076       1429 DAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGHLFSDEKWLEVVLSLK 1508 (1780)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHH
Confidence            223455555666555554432     1133444445555566778888888888888887665543   34555555444


Q ss_pred             hh
Q 016814          316 NA  317 (382)
Q Consensus       316 ~~  317 (382)
                      ..
T Consensus      1509 ~l 1510 (1780)
T PLN03076       1509 EA 1510 (1780)
T ss_pred             HH
Confidence            43

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.10  E-value=0.00018  Score=67.92  Aligned_cols=148  Identities=16%  Similarity=0.201  Sum_probs=83.1

Q ss_pred             HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      +.+..++.|.+.+.++......|-....++..+...++.+.+   .+.++|.+.+.+.=++..+|....+.++.+....+
T Consensus       862 QRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~  941 (1030)
T KOG1967|consen  862 QRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE  941 (1030)
T ss_pred             HHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc
Confidence            445556666666665544555555555566555555444322   25666666666666666666666666665544333


Q ss_pred             --hhhhHHHHHHHHHHHhccch---hHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 016814          225 --VGFFDDKLGALCMQWLQDKV---YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAIS  295 (382)
Q Consensus       225 --~~~~~~~l~~~l~~~l~d~~---~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  295 (382)
                        .....+.++|.+..+-.|++   ..||..|+++++.+.+..+..   .|+..++..+...+.|+..-+|..|+.+=+
T Consensus       942 tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~ 1020 (1030)
T KOG1967|consen  942 TLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQ 1020 (1030)
T ss_pred             ccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhh
Confidence              12223456666666555544   566666666666666644432   245556666666666666666666655433

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=98.09  E-value=0.0023  Score=57.91  Aligned_cols=171  Identities=18%  Similarity=0.099  Sum_probs=121.5

Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc-hh
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG-VG  226 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~  226 (382)
                      +.+.++..+......++..||..+++.+..+...+++  +.+.+.++..+.+-+-|..+.||..++.++..+-+.-+ ++
T Consensus        88 ~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          88 LVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            3455556666667778899999999999999988887  56667788888887889999999999999998865433 22


Q ss_pred             hhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChh
Q 016814          227 FFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSE  304 (382)
Q Consensus       227 ~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~  304 (382)
                      .+.   ...+... -.||+.+||..|+..+..          ...-.|.+++...|-+. .-|.....++..++.....+
T Consensus       168 n~~---~n~l~~~vqnDPS~EVRr~allni~v----------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~ls  234 (885)
T COG5218         168 NRI---VNLLKDIVQNDPSDEVRRLALLNISV----------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLS  234 (885)
T ss_pred             HHH---HHHHHHHHhcCcHHHHHHHHHHHeee----------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhcc
Confidence            222   2223332 368999999998876532          12345777788888774 44556778888887665543


Q ss_pred             hhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       305 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                       ..+.++ .+--.+.|....||.++..++..
T Consensus       235 -i~kri~-l~ewgl~dRe~sv~~a~~d~ia~  263 (885)
T COG5218         235 -IDKRIL-LMEWGLLDREFSVKGALVDAIAS  263 (885)
T ss_pred             -ccceeh-hhhhcchhhhhhHHHHHHHHHHH
Confidence             333443 44457888888999999888754

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=98.07  E-value=0.0023  Score=55.31  Aligned_cols=165  Identities=13%  Similarity=0.207  Sum_probs=109.9

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH------
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL------  110 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~------  110 (382)
                      +-.++....+.+++.+|..+++++|-.+- ++.+. ..+.++.+...++..+..||..|++++..+....|.+.      
T Consensus        28 l~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~-a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~  105 (298)
T PF12719_consen   28 LDSLILPAVQSSDPAVRELALKCLGLCCL-LDKEL-AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESD  105 (298)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhc
Confidence            33456678888999999999999997663 34333 34567788877766689999999999999988776441      


Q ss_pred             -----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccCh-HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814          111 -----AIQHILPCVKELSSDSSQHVRSALASVIMGMA--PLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       111 -----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~  182 (382)
                           ....++..+.+.+.+.++.+|..+++.++.+.  ..+.+ ......++-.+.+--..++..+|......+..++.
T Consensus       106 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~  185 (298)
T PF12719_consen  106 NDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS  185 (298)
T ss_pred             cCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence                 12457788888888889999999999999864  34444 33334444333333334456677655555555543


Q ss_pred             hhc--hhhHhhhHHHHHHHHhcC
Q 016814          183 VIG--IDLLSQSLLPAIVELAED  203 (382)
Q Consensus       183 ~~~--~~~~~~~llp~l~~~~~d  203 (382)
                      .-.  .+.+.+.++|.+..+.+.
T Consensus       186 s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  186 SSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhC
Confidence            322  133345566777766543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.07  E-value=0.0084  Score=55.09  Aligned_cols=135  Identities=13%  Similarity=0.140  Sum_probs=99.9

Q ss_pred             CchHHHHHHHHhHHHHhhh---chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhh
Q 016814          205 HWRVRLAIIEYIPLLASQL---GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEM  278 (382)
Q Consensus       205 ~~~vr~~~~~~l~~l~~~~---~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~  278 (382)
                      +...+.+++.++..++..+   ....-...+...+.+++.|++..|...+..++..++=.+|+   .+.....+..+.++
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~s~  469 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILESM  469 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHHHH
Confidence            3445666666665554433   22222345666777888999999999999999999877775   34566788999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChhh---hhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSEI---TCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~~---~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      +.++...+|..+.+++-.+.-++..+.   ...++ ...+..+.+|+.+.|...+.+.+..+...
T Consensus       470 ~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  470 LTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcC
Confidence            999999999999999999886655431   22233 34567788999999999999998887643

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=98.06  E-value=0.0014  Score=56.62  Aligned_cols=166  Identities=17%  Similarity=0.215  Sum_probs=108.7

Q ss_pred             chHHHH-HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----
Q 016814           75 DLVPAY-VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----  149 (382)
Q Consensus        75 ~ll~~l-~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----  149 (382)
                      .++..+ ...+.++++.||+.|++++|-++- ++++.. ...++.+...++..+..||..+++++..+....|.+.    
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~L-ld~~~a-~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~  103 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCL-LDKELA-KEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSE  103 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH-hChHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccch
Confidence            344333 367788899999999999998754 333322 3456777777766689999999999998876666322    


Q ss_pred             -------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh--hch-hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814          150 -------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV--IGI-DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  219 (382)
Q Consensus       150 -------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~--~~~-~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  219 (382)
                             ....+...+.+.+.+.+++++..+++.++++.-.  +.. ..+...++-....-...++.+.|+.+...++.+
T Consensus       104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y  183 (298)
T PF12719_consen  104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVY  183 (298)
T ss_pred             hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHH
Confidence                   2356888999999999999999999999997533  222 222233332222222445667777777777776


Q ss_pred             Hhhhc--hhhhHHHHHHHHHHHhcc
Q 016814          220 ASQLG--VGFFDDKLGALCMQWLQD  242 (382)
Q Consensus       220 ~~~~~--~~~~~~~l~~~l~~~l~d  242 (382)
                      +..-.  ...+.+.++|.+..+...
T Consensus       184 ~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  184 ASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            64332  233445566666655543

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=98.04  E-value=8.7e-05  Score=69.97  Aligned_cols=149  Identities=15%  Similarity=0.171  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--  303 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--  303 (382)
                      ...++|.+.+........+|..-..++..+..+.+.+.   ....++|.+++.+.=++..+|..+..++..+....+.  
T Consensus       865 F~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~  944 (1030)
T KOG1967|consen  865 FCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ  944 (1030)
T ss_pred             HHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence            34567777776665566667777777777777666543   3456777777777777777777777777776544442  


Q ss_pred             hhhhhhhHHHHHhhccCCC---ccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          304 EITCSRLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       304 ~~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ......++|.++..-.|.+   -.||..|++.|+.+.+.....   .+...++.++.+.+.|+..-||..|.++=+.+..
T Consensus       945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen  945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred             hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence            2466777777777766655   467777777777777654432   4667777777777777777777777776555543

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.012  Score=55.24  Aligned_cols=288  Identities=15%  Similarity=0.165  Sum_probs=177.5

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC------Ccc------------
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG------PEP------------   71 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~------~~~------------   71 (382)
                      ..=|+.|++++..+++.....-....+-|++..+-.|- |+..-..+.+.+..+...-.      ...            
T Consensus        37 ~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~  116 (970)
T KOG0946|consen   37 LEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQ  116 (970)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHH
Confidence            35589999999999997765444455556655555553 56666777777766654332      000            


Q ss_pred             --cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH-----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           72 --TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL-----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        72 --~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~-----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                        ..+..+..++..+...+..||..+++.+.++..+-+.+.     ..+.-+..++.++.|....+|..++..+..+.+.
T Consensus       117 fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~  196 (970)
T KOG0946|consen  117 FIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKD  196 (970)
T ss_pred             HHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHcc
Confidence              013467788888888899999999999999999888772     1233456778899999999999999999999876


Q ss_pred             cChH---hHHHhhHHHHHHhhcCC----ChHHHHHHHHhhHHhhhhhchh--hH-hhhHHHHHHHHh-----cCC---Cc
Q 016814          145 LGKD---ATIEQLLPIFLSLLKDE----FPDVRLNIISKLDQVNQVIGID--LL-SQSLLPAIVELA-----EDR---HW  206 (382)
Q Consensus       145 ~~~~---~~~~~l~~~l~~~l~d~----~~~vr~~~~~~l~~~~~~~~~~--~~-~~~llp~l~~~~-----~d~---~~  206 (382)
                      .+.-   ...+.++..+..++..+    ..-|-..|+..+-.+.+.-...  .| ....+|.+..++     .|.   .|
T Consensus       197 n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W  276 (970)
T KOG0946|consen  197 NSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGW  276 (970)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccc
Confidence            5531   12355555555555542    1246666766666665543221  11 134667776554     343   46


Q ss_pred             hH-HHH-HHHHhHHHHhhhchh------------hhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--HHH-
Q 016814          207 RV-RLA-IIEYIPLLASQLGVG------------FFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP--EWA-  267 (382)
Q Consensus       207 ~v-r~~-~~~~l~~l~~~~~~~------------~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--~~~-  267 (382)
                      .. |.. +...+..+-..+.|.            .....++..+-..+.++  ...|+..++..++.++.....  +.| 
T Consensus       277 ~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~  356 (970)
T KOG0946|consen  277 STQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFA  356 (970)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHh
Confidence            43 222 222222222222211            11234555555555544  567899888888888753211  111 


Q ss_pred             ----------HhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhc
Q 016814          268 ----------MQHITPQVLEMINNPH-YLYRMTILRAISLLA  298 (382)
Q Consensus       268 ----------~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~  298 (382)
                                +..++-.++.++.... +..|.+.++++..+.
T Consensus       357 ~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcAv~ycf~s~l  398 (970)
T KOG0946|consen  357 DVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCAVLYCFRSYL  398 (970)
T ss_pred             hccCCCCCCCccchhHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence                      2234445566666555 789999999998764

>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]

Probab=98.03  E-value=0.013  Score=59.28  Aligned_cols=335  Identities=13%  Similarity=0.108  Sum_probs=169.8

Q ss_pred             hhhhhhhhhhh-----hccCCCHHHHHHHHHHHHHHHHHhCCcc-cc----cchHHHHH---HhcCCCc-HH--HHHHHH
Q 016814           33 CVAHILPVIVN-----FSQDKSWRVRYMVANQLYELCEAVGPEP-TR----MDLVPAYV---RLLRDNE-AE--VRIAAA   96 (382)
Q Consensus        33 ~~~~ll~~l~~-----~~~d~~~~vR~~a~~~l~~l~~~~~~~~-~~----~~ll~~l~---~~l~d~~-~~--VR~~a~   96 (382)
                      ....+.|+...     +++++|-.||...+-|+..|.....++. +.    ..+...++   ..+.|.. |.  -+-.-+
T Consensus        42 ~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aPeaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~ll  121 (1266)
T KOG1525|consen   42 DLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAPEAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLL  121 (1266)
T ss_pred             hHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHH
Confidence            34456665554     3467888999999999999998887642 22    12333332   3445543 22  233333


Q ss_pred             HHHHHHHHh--h---CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHH-HHHhhcC---CCh
Q 016814           97 GKVTKFCRI--L---NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI-FLSLLKD---EFP  167 (382)
Q Consensus        97 ~~l~~l~~~--~---~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~-l~~~l~d---~~~  167 (382)
                      +.+..+.-.  +   ..+.....+...+..+..+..+.--......+..+....+  .....++.. +.++++.   ..+
T Consensus       122 etl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~~~~i~~~li~e~d--~v~~e~L~~ll~~lv~~~~~~~~  199 (1266)
T KOG1525|consen  122 ETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFNMLDIAIMLITEED--TVQSELLDVLLENLVKPGRDTIK  199 (1266)
T ss_pred             HHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHhccCCCCccH
Confidence            444333211  1   2234444555666666654444222223333333322211  122333333 3344433   222


Q ss_pred             HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHH
Q 016814          168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSI  247 (382)
Q Consensus       168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~v  247 (382)
                      .-+..+-..+...+..+..+ +.+.+...+.... ...-.++....+.+-.+-. ..++. .-.++|.+..-|...+..+
T Consensus       200 ~a~~la~~li~~~a~~~~~~-i~~f~~~~~~~~~-s~~~~~~~~~he~i~~L~~-~~p~l-l~~vip~l~~eL~se~~~~  275 (1266)
T KOG1525|consen  200 EADKLASDLIERCADNLEDT-IANFLNSCLTEYK-SRQSSLKIKYHELILELWR-IAPQL-LLAVIPQLEFELLSEQEEV  275 (1266)
T ss_pred             HHHHHHHHHHHHhhhhhchh-HHHHHHHHHhhcc-ccccchhhHHHHHHHHHHH-hhHHH-HHHHHHHHHHHHhcchHHH
Confidence            33333333333333322211 1122222222111 0111222333333333222 11222 2357788888888899999


Q ss_pred             HHHHHHHHHHHHHHhChHHH--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhh-hhHHHHHhhccCCCcc
Q 016814          248 RDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS-RLLPVVINASKDRVPN  324 (382)
Q Consensus       248 r~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~-~~l~~l~~~l~d~~~~  324 (382)
                      |..|...+|.+....+....  ...+...++..+.|.+..+|..++.......-+-+ +.... .+.-.+.....|  +.
T Consensus       276 Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~-~~~~~~~~~~~l~~~~~D--~~  352 (1266)
T KOG1525|consen  276 RLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNP-SIAKASTILLALRERDLD--ED  352 (1266)
T ss_pred             HHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCc-hhhhHHHHHHHHHhhcCC--hh
Confidence            99999999999876544333  34577778888899999999999999988653322 11111 111222223344  44


Q ss_pred             HHHHHHHHHHHHh-hhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          325 IKFNVAKVLQSLI-PIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       325 vR~~a~~~l~~i~-~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +|....-++.... ..+.-..... ++..+.+.+.|..+.||..|...+..+..
T Consensus       353 ~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk  405 (1266)
T KOG1525|consen  353 VRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYK  405 (1266)
T ss_pred             hhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            4433222221110 0111112223 67777778899999999999999998877

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=98.03  E-value=8.5e-06  Score=43.43  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=26.3

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHH
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEA   66 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~   66 (382)
                      ++|.+.++++|++|+||.+++.+++.+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            578899999999999999999999999864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=4.4e-05  Score=68.17  Aligned_cols=152  Identities=17%  Similarity=0.119  Sum_probs=85.6

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      |.+|+.|.++..|-..+-.++..-..-+.......++|+   ..+|.+..||.+|+-+||-+|-  .+    ..+++-.+
T Consensus       521 I~ell~d~ds~lRy~G~fs~alAy~GTgn~~vv~~lLh~---avsD~nDDVrRAAViAlGfvc~--~D----~~~lv~tv  591 (926)
T COG5116         521 INELLYDKDSILRYNGVFSLALAYVGTGNLGVVSTLLHY---AVSDGNDDVRRAAVIALGFVCC--DD----RDLLVGTV  591 (926)
T ss_pred             HHHHhcCchHHhhhccHHHHHHHHhcCCcchhHhhhhee---ecccCchHHHHHHHHheeeeEe--cC----cchhhHHH
Confidence            446677777777766665555444434443333434332   3567777777777777776552  11    12345555


Q ss_pred             HhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHH
Q 016814           82 RLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF  158 (382)
Q Consensus        82 ~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l  158 (382)
                      +++.+ .++.||...+-+|+-.+..-+..    ..+..+..+..|++..||++++-+++-+.-...++.  ....+...+
T Consensus       592 elLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f  667 (926)
T COG5116         592 ELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNVKRIIKKF  667 (926)
T ss_pred             HHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhHHHHHHHH
Confidence            54443 45777777777777666554443    234556666777777777777777766553333222  123445555


Q ss_pred             HHhhcCCC
Q 016814          159 LSLLKDEF  166 (382)
Q Consensus       159 ~~~l~d~~  166 (382)
                      .+.+.|..
T Consensus       668 ~~vI~~Kh  675 (926)
T COG5116         668 NRVIVDKH  675 (926)
T ss_pred             HHHHhhhh
Confidence            55555543

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.00  E-value=0.0036  Score=59.04  Aligned_cols=187  Identities=16%  Similarity=0.167  Sum_probs=122.9

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-----ccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCHH-
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-----RMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNPE-  109 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-----~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~~-  109 (382)
                      +-.++..+-...|+.....++..|-++.. ++.+..     .+.++|.++.+++++ +.++...|+++|..+++.++.. 
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~-mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLS-MGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHh-hcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            33334444344455555444444433332 233322     245899999999886 5899999999999999998765 


Q ss_pred             --HHHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 016814          110 --LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  186 (382)
Q Consensus       110 --~~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~  186 (382)
                        .+-...+|.+.+ ++.=+--.|-+.++.++..+...-+.......-+-....++.==+-.+++.++......++.+.+
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~s  327 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRS  327 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence              222357787776 33444557888999999999877776554322222222222111345666777777778888877


Q ss_pred             hhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          187 DLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       187 ~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      |.+  .-..+|.|..++...+.+.-...+-++..++..+.
T Consensus       328 d~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~  367 (1051)
T KOG0168|consen  328 DEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQ  367 (1051)
T ss_pred             ccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcc
Confidence            755  34568999999998888888888889988888764

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=97.95  E-value=0.00049  Score=67.23  Aligned_cols=181  Identities=12%  Similarity=0.077  Sum_probs=118.1

Q ss_pred             HHHhhcCC-ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--hhhhHHHHHH
Q 016814          158 FLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFDDKLGA  234 (382)
Q Consensus       158 l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~~  234 (382)
                      +.+++.|+ ...||..++++++.+........+ ...+..+.+++..++|++|...+..+.+......  -..+...+++
T Consensus       133 f~dfisd~vvapVre~caq~L~~~l~~~~~s~~-~~~~~il~q~~~q~~w~ir~Ggll~iky~~air~d~l~~~~~~vl~  211 (1549)
T KOG0392|consen  133 FGDFISDNVVAPVREACAQALGAYLKHMDESLI-KETLDILLQMLRQPNWEIRHGGLLGIKYNVAIRQDLLFQLLNLVLD  211 (1549)
T ss_pred             hcccccccchhhhHHHHHHHHHHHHHhhhhHhh-HHHHHHHHHHHcCcchhheechHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444443 368999999999999988877666 7778888899999999999988888776655222  1233456788


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhCh---H---HHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHh-ccccChh-
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGP---E---WAMQHITPQVLEMIN--NPHYLYRMTILRAISLL-APVMGSE-  304 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~---~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l-~~~~~~~-  304 (382)
                      .+...+.|.+..||..|++.+..+......   +   .....+...+.++..  ......|.-....+... ...+... 
T Consensus       212 ~~i~~L~ds~ddv~~~aa~~l~~~~s~~v~l~~~~i~~lv~~l~~~l~~lddl~~s~~si~~ll~~l~~~~evl~l~~~~  291 (1549)
T KOG0392|consen  212 FVIEGLEDSDDDVRSVAAQFLVPAPSIQVKLMVQKIAKLVHTLWSFLLELDDLSSSTASIMHLLDELCIENEVLDLFEQQ  291 (1549)
T ss_pred             HHHhhhhhcchHHHHHHHHHhhhhhHHHHhhhHhHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHhhhHHHHHHHHHh
Confidence            888999999999999999998888776521   1   111222222222221  11122333322222221 1111111 


Q ss_pred             hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814          305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       305 ~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      .....+.|.++.++.+....+|.++++.+..+.+.
T Consensus       292 n~~~~Lvp~~~p~l~~~i~sv~~a~l~~l~~lle~  326 (1549)
T KOG0392|consen  292 NLEVGLVPRLWPFLRHTISSVRRAALETLAMLLEA  326 (1549)
T ss_pred             hhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            12246788888889888899999999999888764

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.92  E-value=0.0028  Score=61.07  Aligned_cols=164  Identities=18%  Similarity=0.203  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHhcC----CCchHHHHHHHHhHHHHhhhchh----------------hhHHHHHHHHHHHhccchhHHHHH
Q 016814          191 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLGVG----------------FFDDKLGALCMQWLQDKVYSIRDA  250 (382)
Q Consensus       191 ~~llp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~~~----------------~~~~~l~~~l~~~l~d~~~~vr~~  250 (382)
                      ..++..+..+++.    ++..++..++-.++.+....-..                .+.+.+...+.......+.+.+..
T Consensus       430 ~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  509 (618)
T PF01347_consen  430 EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIV  509 (618)
T ss_dssp             HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHH
Confidence            3444545555443    34567888888888776544222                233445555555555667788889


Q ss_pred             HHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHH
Q 016814          251 AANNLKRLAEEFGPEWAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKF  327 (382)
Q Consensus       251 a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~  327 (382)
                      ++++||.+..        ...++.+...+.+.   ...+|.+|++++..+...+.. ...+.++|.+.+--.  .+++|.
T Consensus       510 ~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~-~v~~~l~~I~~n~~e--~~EvRi  578 (618)
T PF01347_consen  510 YLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPE-KVREILLPIFMNTTE--DPEVRI  578 (618)
T ss_dssp             HHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HH-HHHHHHHHHHH-TTS---HHHHH
T ss_pred             HHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcH-HHHHHHHHHhcCCCC--ChhHHH
Confidence            9999988753        34677777777666   578999999999988654433 345555555554333  367999


Q ss_pred             HHHHHHHHHhhhhhHHHHHHhHHHHHHH-hcCCCCccHHhHHHHHH
Q 016814          328 NVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAI  372 (382)
Q Consensus       328 ~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al  372 (382)
                      +|...|-..-..       ..++..+.. +-.|++.+|+......|
T Consensus       579 aA~~~lm~~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  579 AAYLILMRCNPS-------PSVLQRIAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             HHHHHHHHT----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred             HHHHHHHhcCCC-------HHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence            998766553221       123333333 56789999988877665

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.91  E-value=0.0029  Score=55.99  Aligned_cols=126  Identities=20%  Similarity=0.236  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhcccc-----C----------
Q 016814          244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----G----------  302 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~-----~----------  302 (382)
                      ....|.+|...+..+++..+.+. .+.+...+...+.      ..+|+-+.+|+..++.++...     |          
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v-~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQV-TSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            35578889999999998775432 2222233333332      356999999999999997543     1          


Q ss_pred             hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHH
Q 016814          303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI  372 (382)
Q Consensus       303 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al  372 (382)
                      .+.+.++++|.+. .-.+..|-+|..|++.+..+...+..+ ....++|.+...+.+++.-|+.-|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            1235567777776 333556779999999999999988765 4567999999999999999999888775

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]

Probab=97.90  E-value=0.0043  Score=59.37  Aligned_cols=210  Identities=14%  Similarity=0.092  Sum_probs=129.2

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHH
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKL  232 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l  232 (382)
                      .+..++...+-|+.+.||..++.++..+.+..+.- ....++..+.....|+...++.++...+..-......+.....+
T Consensus       472 ~~~~~~~~rClDkaaavR~~al~s~tk~l~l~~~~-~~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~  550 (1529)
T KOG0413|consen  472 VLYNIVYMRCLDKAAAVRLHALNSLTKILQLQSHR-EAFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDL  550 (1529)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccc-chHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhh
Confidence            45567777788889999999999999887765432 22455555555555555666644444332211111111111111


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhhhhhhhH
Q 016814          233 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEITCSRLL  311 (382)
Q Consensus       233 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l  311 (382)
                      +---.++..|...           .+.. -|...+.+.++-.+...++ |....+|.+++..+......+..+..++..+
T Consensus       551 l~~~~~ii~d~~~-----------~~~~-~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L  618 (1529)
T KOG0413|consen  551 LLDEQQIIQDFKL-----------KLMN-KGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVL  618 (1529)
T ss_pred             cCcchhhhhhcch-----------hhhh-ccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHH
Confidence            1111111122111           1111 1222344556667777776 6667888999998888888888776666767


Q ss_pred             HHHHhhccCCCccHHHHHHHHHHHHhhhhh-HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          312 PVVINASKDRVPNIKFNVAKVLQSLIPIVD-QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       312 ~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~-~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      -.+-..+.|+...||..++.+|+.+...-. --.+...++..+..+++|.+..|...|.+.+..+
T Consensus       619 ~iLq~lCrd~~vsvrk~~~~Sltel~~~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~  683 (1529)
T KOG0413|consen  619 SILQMLCRDRMVSVRKTGADSLTELMLRDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKV  683 (1529)
T ss_pred             HHHHHHhcCcchHHHHHHHHHHHHHHhhCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            777778889888899999999988754211 1135678888888888898888888887754443

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=97.88  E-value=0.033  Score=58.75  Aligned_cols=290  Identities=11%  Similarity=0.069  Sum_probs=173.2

Q ss_pred             HHHHHHHHHHHHHHHhCCc--cccc----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHHHhhhHhh
Q 016814           52 VRYMVANQLYELCEAVGPE--PTRM----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAIQHILPCV  119 (382)
Q Consensus        52 vR~~a~~~l~~l~~~~~~~--~~~~----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-----~~~~~il~~l  119 (382)
                      -|...+..|..++.+--..  ..+.    .+-+.+.+...+++..|+..|+..|.+++..+ ..+     .+.+.++..+
T Consensus      1108 pr~FsLqKLveIa~~Nm~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPf 1187 (1780)
T PLN03076       1108 PRVFSLTKIVEIAHYNMNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPF 1187 (1780)
T ss_pred             CchhHHHHHHHHHHhcccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHH
Confidence            3677777777777544332  2223    35555666555667789999999998887654 222     2334566777


Q ss_pred             hhhc-CCCchHHHHHHHHHHHhhccccChHhHH--HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh-h---c---hhhH
Q 016814          120 KELS-SDSSQHVRSALASVIMGMAPLLGKDATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV-I---G---IDLL  189 (382)
Q Consensus       120 ~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~-~---~---~~~~  189 (382)
                      ...+ ...+..||+..++++..+....+.....  +.++.++.....++++.+-..+.+.+..+... +   .   .+.+
T Consensus      1188 e~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F 1267 (1780)
T PLN03076       1188 VIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTF 1267 (1780)
T ss_pred             HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHH
Confidence            6644 4566799999999999887655432211  56777777777788888877787777766432 1   1   2333


Q ss_pred             hhhHHHHHHHHhcCC-CchHHHHHHHHhHHHHhhh-----------------------------------chhhhHHHHH
Q 016814          190 SQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQL-----------------------------------GVGFFDDKLG  233 (382)
Q Consensus       190 ~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~-----------------------------------~~~~~~~~l~  233 (382)
                       ..++..+.++.+.. +.++-..++..+..++..+                                   +.+......+
T Consensus      1268 -~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~ 1346 (1780)
T PLN03076       1268 -TDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWF 1346 (1780)
T ss_pred             -HHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHH
Confidence             44555555555433 2334344444444332221                                   0011112345


Q ss_pred             HHHH---HHhccchhHHHHHHHHHHHHHHHHhChH----H----HHhhhHHHHHhhhc----------------------
Q 016814          234 ALCM---QWLQDKVYSIRDAAANNLKRLAEEFGPE----W----AMQHITPQVLEMIN----------------------  280 (382)
Q Consensus       234 ~~l~---~~l~d~~~~vr~~a~~~l~~~~~~~~~~----~----~~~~l~~~l~~~l~----------------------  280 (382)
                      |++.   ....|+..+||..|+..+-.+...+|..    +    +...++|.+...-.                      
T Consensus      1347 pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~~~~~ 1426 (1780)
T PLN03076       1347 PLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGDQGEL 1426 (1780)
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccch
Confidence            5554   4467999999999999999988887753    2    33445555433110                      


Q ss_pred             CcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          281 NPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       281 ~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      +.+....++...++..++..+..-     .....++..+..+...++..+-.....+|..+....|.
T Consensus      1427 e~~~Wl~eT~~~AL~~lvdLft~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ng~ 1493 (1780)
T PLN03076       1427 DQDAWLYETCTLALQLVVDLFVKFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSNAGH 1493 (1780)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHhhc
Confidence            001113566666776666554432     23344455555566677787777888888888766554

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=0.0021  Score=53.47  Aligned_cols=136  Identities=12%  Similarity=0.163  Sum_probs=65.0

Q ss_pred             HhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--HhhhHHH
Q 016814          200 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQ  274 (382)
Q Consensus       200 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~  274 (382)
                      .+.+++|.....++..+..++..-. +...   ..++..+.+-+++....|-.+|+.+++.+.+.++....  .+.++..
T Consensus        96 ~L~s~dW~~~vdgLn~irrLs~fh~-e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~  174 (334)
T KOG2933|consen   96 KLSSDDWEDKVDGLNSIRRLSEFHP-ESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQ  174 (334)
T ss_pred             HhchHHHHHHhhhHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666555554222 2222   22333444445555566666666666666655543211  1112222


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      ++..-..++..+|+.|-.++..+.....+.    .+++.+..++...++.+|..++..+......+
T Consensus       175 Ll~ka~~dnrFvreda~kAL~aMV~~vtp~----~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl  236 (334)
T KOG2933|consen  175 LLHKASQDNRFVREDAEKALVAMVNHVTPQ----KLLRKLIPILQHSNPRVRAKAALCFSRCVIRL  236 (334)
T ss_pred             HHhhhcccchHHHHHHHHHHHHHHhccChH----HHHHHHHHHHhhhchhhhhhhhccccccceec
Confidence            222222334556666666666655544443    34444444455555556655555554444433

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0012  Score=59.38  Aligned_cols=247  Identities=11%  Similarity=0.057  Sum_probs=150.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC-CCh
Q 016814           89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFP  167 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~  167 (382)
                      +.+...++-.++-..  ++..  ...+...+++++...+...-+++...++-+.-..+.    ...+.-+.....+ +..
T Consensus       425 ~~l~yG~~LGiGL~~--MgSa--n~eiye~lKe~l~nD~a~~geAa~~gMGl~mLgt~s----~eai~dm~tya~ETqhe  496 (926)
T COG5116         425 PELAYGVCLGIGLIN--MGSA--NREIYEKLKELLKNDRALLGEAAVYGMGLLMLGTWS----VEAIEDMRTYAGETQHE  496 (926)
T ss_pred             HHHHHHHHhhhcchh--cccc--cHHHHHHHHHHHhcchhhhhhhhhhccceeeecCCC----HHHHHHHHHHhcchhhh
Confidence            345555555444332  2221  135667778877766666666666666655432222    2222333333333 345


Q ss_pred             HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH-hccchhH
Q 016814          168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW-LQDKVYS  246 (382)
Q Consensus       168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~-l~d~~~~  246 (382)
                      .+.++..-.+..+.  +|.+..   .-..+.+++.|.++-.|...+-.+..--..-|..    .++..+.+. .+|.+..
T Consensus       497 ~i~Rglgig~aLi~--ygrqe~---add~I~ell~d~ds~lRy~G~fs~alAy~GTgn~----~vv~~lLh~avsD~nDD  567 (926)
T COG5116         497 RIKRGLGIGFALIL--YGRQEM---ADDYINELLYDKDSILRYNGVFSLALAYVGTGNL----GVVSTLLHYAVSDGNDD  567 (926)
T ss_pred             hHHhhhhhhhhHhh--hhhHHH---HHHHHHHHhcCchHHhhhccHHHHHHHHhcCCcc----hhHhhhheeecccCchH
Confidence            56665555544432  233322   2335667778888888888877766543322332    233333333 7899999


Q ss_pred             HHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccH
Q 016814          247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI  325 (382)
Q Consensus       247 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~v  325 (382)
                      ||.+|+-++|.++-.  .    ...++...+.+.+ .+..+|...+-+++..+...|.+    ..+..+-.+..|++.-|
T Consensus       568 VrRAAViAlGfvc~~--D----~~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~----~a~diL~~L~~D~~dfV  637 (926)
T COG5116         568 VRRAAVIALGFVCCD--D----RDLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK----VATDILEALMYDTNDFV  637 (926)
T ss_pred             HHHHHHHheeeeEec--C----cchhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH----HHHHHHHHHhhCcHHHH
Confidence            999999999987732  2    2356666666665 46999999999999988777754    23344556778999999


Q ss_pred             HHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhcCCCCc
Q 016814          326 KFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       326 R~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~~d~~~  362 (382)
                      |++|+-+++.|.....++.  ....|...+.+...|...
T Consensus       638 RQ~AmIa~~mIl~Q~n~~Lnp~v~~I~k~f~~vI~~Khe  676 (926)
T COG5116         638 RQSAMIAVGMILMQCNPELNPNVKRIIKKFNRVIVDKHE  676 (926)
T ss_pred             HHHHHHHHHHHHhhcCcccChhHHHHHHHHHHHHhhhhH
Confidence            9999999999987665542  224555666666666544

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.75  E-value=0.0024  Score=62.35  Aligned_cols=167  Identities=16%  Similarity=0.175  Sum_probs=123.6

Q ss_pred             ChHhHHHhhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHH
Q 016814          146 GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~  220 (382)
                      |+......+.|++.+.++.    .+|+++.+|.-+++++.-. +. .|.+.-+|.+...+. .+++.+|..++-.++-++
T Consensus       912 gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa-~fces~l~llftimeksp~p~IRsN~VvalgDla  989 (1251)
T KOG0414|consen  912 GEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SA-EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLA  989 (1251)
T ss_pred             ChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hH-HHHHHHHHHHHHHHhcCCCceeeecchheccchh
Confidence            4445567888999999854    5699999999999998643 22 344677788877765 899999999999999887


Q ss_pred             hhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814          221 SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       221 ~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  300 (382)
                      -.++. . .+..-+.+...+.|++..||+.|+..+..++-+  ...-.+..++.+-..+.|++.++|..|-.++..++..
T Consensus       990 v~fpn-l-ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k 1065 (1251)
T KOG0414|consen  990 VRFPN-L-IEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSK 1065 (1251)
T ss_pred             hhccc-c-cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhc
Confidence            65543 2 234667778889999999999999999998753  1111234566667778999999999999888888754


Q ss_pred             cChhhhhhhhHHHHHhhccCC
Q 016814          301 MGSEITCSRLLPVVINASKDR  321 (382)
Q Consensus       301 ~~~~~~~~~~l~~l~~~l~d~  321 (382)
                      -.   ..-.++|-++..|.|+
T Consensus      1066 ~n---~iynlLPdil~~Ls~~ 1083 (1251)
T KOG0414|consen 1066 GN---TIYNLLPDILSRLSNG 1083 (1251)
T ss_pred             cc---chhhhchHHHHhhccC
Confidence            32   3345666666666665

>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3

Probab=97.74  E-value=0.022  Score=53.07  Aligned_cols=146  Identities=14%  Similarity=0.223  Sum_probs=94.2

Q ss_pred             hHHHHHHHHhcCC--CchHHHHHHHHh---HHHHhhhchhhhHHHHHHHHH----HHhc--------cchhHHHHHHHHH
Q 016814          192 SLLPAIVELAEDR--HWRVRLAIIEYI---PLLASQLGVGFFDDKLGALCM----QWLQ--------DKVYSIRDAAANN  254 (382)
Q Consensus       192 ~llp~l~~~~~d~--~~~vr~~~~~~l---~~l~~~~~~~~~~~~l~~~l~----~~l~--------d~~~~vr~~a~~~  254 (382)
                      .++..+...+.++  +.+.|..+++.+   .......++.... .+-|.+.    ..+.        ..+...|..+.++
T Consensus       319 ~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~~~~~~~l~-~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~  397 (501)
T PF13001_consen  319 NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFKHISPQILK-LLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYET  397 (501)
T ss_pred             cHHHHHhccccCCccccccchhcchhhhcchHHhhhcCHHHHH-HHHHHHHhcCccccccccccCCCcccHHHHHHHHHH
Confidence            3344444444455  678888888888   7777777665443 3333333    2231        2456799999999


Q ss_pred             HHHHHHHhChHH-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh-----hhhhHH-HHHhhccCCCccHHH
Q 016814          255 LKRLAEEFGPEW-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT-----CSRLLP-VVINASKDRVPNIKF  327 (382)
Q Consensus       255 l~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~-----~~~~l~-~l~~~l~d~~~~vR~  327 (382)
                      +|.+++....-. -.-.++..+++.+.++...+|.+.-++++.++..+....-     ....+. .+.....+....+|.
T Consensus       398 lG~L~~~~p~l~~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~  477 (501)
T PF13001_consen  398 LGLLAKRAPSLFSKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRY  477 (501)
T ss_pred             HHHHHccCcccccccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHH
Confidence            999998765422 1234667777777888899999999999999877664211     122222 222334455667898


Q ss_pred             HHHHHHHHHhh
Q 016814          328 NVAKVLQSLIP  338 (382)
Q Consensus       328 ~a~~~l~~i~~  338 (382)
                      .|++....+..
T Consensus       478 ~avk~an~~fp  488 (501)
T PF13001_consen  478 AAVKYANACFP  488 (501)
T ss_pred             HHHHHHHHhCC
Confidence            88888877664

4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=97.71  E-value=0.016  Score=51.40  Aligned_cols=126  Identities=16%  Similarity=0.181  Sum_probs=88.8

Q ss_pred             CchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHhC---------------
Q 016814          205 HWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ------DKVYSIRDAAANNLKRLAEEFG---------------  263 (382)
Q Consensus       205 ~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~------d~~~~vr~~a~~~l~~~~~~~~---------------  263 (382)
                      ....|.++...+..+++..+.... +.+...+...++      ..+|+-+.+|+..++.++....               
T Consensus       224 ~~TrR~AA~dfl~~L~~~~~~~v~-~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v  302 (370)
T PF08506_consen  224 SDTRRRAACDFLRSLCKKFEKQVT-SILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDV  302 (370)
T ss_dssp             --SHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-H
T ss_pred             cCCcHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccH
Confidence            346788889999999887665432 233344444443      4578999999999999986541               


Q ss_pred             hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814          264 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVL  333 (382)
Q Consensus       264 ~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  333 (382)
                      .+++...++|.+. --.+..+-+|..|++.+..+-..++.+ ....++|.+..++.+++.-|+.-|+.++
T Consensus       303 ~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~~-~l~~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  303 VDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPKE-QLLQIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-HH-HHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCHH-HHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence            1345667788776 223456889999999999998887765 6678999999999999999999888764

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.71  E-value=0.01  Score=56.64  Aligned_cols=161  Identities=16%  Similarity=0.075  Sum_probs=85.2

Q ss_pred             hhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHH----hcCCCchHHHHHHHHhHH
Q 016814          153 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVEL----AEDRHWRVRLAIIEYIPL  218 (382)
Q Consensus       153 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~----~~d~~~~vr~~~~~~l~~  218 (382)
                      .++..+.+++++    .++.+|..+.-+++.+....-.      ....+.++|.+.+.    .++.+...+...++.|+.
T Consensus       393 ~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN  472 (574)
T smart00638      393 EILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGN  472 (574)
T ss_pred             HHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhc
Confidence            444455555543    4678899999888887653211      11123444444433    334455556666777765


Q ss_pred             HHhhhchhhhHHHHHHHHHHHhc---cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHH
Q 016814          219 LASQLGVGFFDDKLGALCMQWLQ---DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRA  293 (382)
Q Consensus       219 l~~~~~~~~~~~~l~~~l~~~l~---d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~  293 (382)
                      +..        +..++.+...+.   +.+..+|.+|+.++..++..... .    +-+.++..+.|  .+..+|.+|+..
T Consensus       473 ~g~--------~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~-~----v~~~l~~i~~n~~e~~EvRiaA~~~  539 (574)
T smart00638      473 AGH--------PSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPR-K----VQEVLLPIYLNRAEPPEVRMAAVLV  539 (574)
T ss_pred             cCC--------hhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCch-H----HHHHHHHHHcCCCCChHHHHHHHHH
Confidence            542        122223333332   34567888888888887764432 2    33344444444  346788888887


Q ss_pred             HHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814          294 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV  332 (382)
Q Consensus       294 l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  332 (382)
                      +...-   +.......+..   ....|++.+|+......
T Consensus       540 lm~t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~  572 (574)
T smart00638      540 LMETK---PSVALLQRIAE---LLNKEPNLQVASFVYSH  572 (574)
T ss_pred             HHhcC---CCHHHHHHHHH---HHhhcCcHHHHHHhHHh
Confidence            75532   11112222222   22346666676654443

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.71  E-value=0.0018  Score=62.35  Aligned_cols=205  Identities=17%  Similarity=0.154  Sum_probs=135.8

Q ss_pred             HHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcC
Q 016814           14 RLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLR   85 (382)
Q Consensus        14 R~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~   85 (382)
                      |..|+..|+.+.+ +++    -...--|.|++.++++.+..+.|...+-.-.+|.. +.+    +.++...-..+++.+.
T Consensus       487 RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILA-vD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  487 RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILA-VDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHh-cCchhHHHHHhccCceeEEEEec
Confidence            7778877777766 333    12234589999999999999999988888777764 222    1111111222333444


Q ss_pred             C-C--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHH---HhhH
Q 016814           86 D-N--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATI---EQLL  155 (382)
Q Consensus        86 d-~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~---~~l~  155 (382)
                      + +  +++-|..|+-.|..+...+...   .....++....+.++|. .|-.|.=++-+|+.+-+.+....+.   ..--
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            4 2  3578999999999998875432   33345677777888884 7899999999999997766543322   3444


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hh---------------HhhhHHH----HHHHHhcCCCchHHHHHH
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DL---------------LSQSLLP----AIVELAEDRHWRVRLAII  213 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~---------------~~~~llp----~l~~~~~d~~~~vr~~~~  213 (382)
                      ..+..++.|+.++||.+++-+|+.+......   +.               ..+.+++    .+..+++|..+-||.+++
T Consensus       645 ekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~  724 (1387)
T KOG1517|consen  645 EKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVV  724 (1387)
T ss_pred             HHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHH
Confidence            6667788999999999999999999875311   00               0122233    445556777777777777


Q ss_pred             HHhHHHH
Q 016814          214 EYIPLLA  220 (382)
Q Consensus       214 ~~l~~l~  220 (382)
                      ..+..++
T Consensus       725 v~ls~~~  731 (1387)
T KOG1517|consen  725 VALSHFV  731 (1387)
T ss_pred             HHHHHHH
Confidence            7776654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.70  E-value=0.0012  Score=54.86  Aligned_cols=171  Identities=16%  Similarity=0.149  Sum_probs=120.3

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      .+...+..+.+.+|.+..-++..+..+.......  .....++..+.+-++.....|-.+++.+++.+.+.++.... +.
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~-~~  167 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID-QE  167 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            5666667778899999999999998887765433  23445666777778888889999999999999887775432 24


Q ss_pred             hHHHHHHhhc---CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---
Q 016814          154 LLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---  227 (382)
Q Consensus       154 l~~~l~~~l~---d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---  227 (382)
                      +-..+..++.   +.+.-||..+-++|..+.....+    ..+++.+...+.+.++++|..++.++......+|...   
T Consensus       168 ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp----~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~  243 (334)
T KOG2933|consen  168 LDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP----QKLLRKLIPILQHSNPRVRAKAALCFSRCVIRLGVLPVLL  243 (334)
T ss_pred             HHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh----HHHHHHHHHHHhhhchhhhhhhhccccccceeccccchhh
Confidence            4444455443   34567999999999999888776    4556666666788899999999999988877666221   


Q ss_pred             -hHHHHHHHHHHHhccchhHHHHHH
Q 016814          228 -FDDKLGALCMQWLQDKVYSIRDAA  251 (382)
Q Consensus       228 -~~~~l~~~l~~~l~d~~~~vr~~a  251 (382)
                       +...+.+.+.+-+.|.-+..|++|
T Consensus       244 ~~~~dl~~a~~~~~~d~Lp~~~~~a  268 (334)
T KOG2933|consen  244 QGSCDLSRAAQEQGSDKLPELREAA  268 (334)
T ss_pred             HhHHHHHHHHHhhhcccccccccch
Confidence             222344555555555555555443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.095  Score=54.41  Aligned_cols=216  Identities=18%  Similarity=0.122  Sum_probs=127.4

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhh-hhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccch---HHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPV-IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDL---VPA   79 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~-l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l---l~~   79 (382)
                      ..+...+|..|-.+.++++.++...+...+...+... +.++.+-.++..|..-.-++|-+-++.|.-...+++   +..
T Consensus       883 ~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~i  962 (2067)
T KOG1822|consen  883 NSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHLNTSVSI  962 (2067)
T ss_pred             hhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhcccHHHH
Confidence            3456678999999999999999988776555555544 445555667788888888999998888864433333   446


Q ss_pred             HHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHH--HHHhhhHhhhh-hcCCC--chHHHHHHHHHHH------hhccccCh
Q 016814           80 YVRLLRDNE-AEVRIAAAGKVTKFCRILNPEL--AIQHILPCVKE-LSSDS--SQHVRSALASVIM------GMAPLLGK  147 (382)
Q Consensus        80 l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~--~~~~il~~l~~-~~~d~--~~~vr~~a~~~l~------~l~~~~~~  147 (382)
                      +..+..|+. |.|+.-++.++.-+....++-.  .....+..+.+ ++.++  ..+|+...-+.+.      .+...+|+
T Consensus       963 llal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgp 1042 (2067)
T KOG1822|consen  963 LLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGP 1042 (2067)
T ss_pred             HHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhccc
Confidence            777778876 5899999999988876554431  11112222222 22222  2344444444444      34333332


Q ss_pred             Hh-------HH----HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHh
Q 016814          148 DA-------TI----EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYI  216 (382)
Q Consensus       148 ~~-------~~----~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l  216 (382)
                      +.       ..    ...+-...-++..+++.+...+++.+-.+.-+-+...-.+.+++.+..++.....-.|.....++
T Consensus      1043 eL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l~s~~~i~r~~~~~cl 1122 (2067)
T KOG1822|consen 1043 ELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLLSSSYLILRRASFSCL 1122 (2067)
T ss_pred             ccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHhcchhhhhhhhHHhhh
Confidence            21       00    11111111123445777888888877776655554433366677777766665555555544444


Q ss_pred             HHH
Q 016814          217 PLL  219 (382)
Q Consensus       217 ~~l  219 (382)
                      .++
T Consensus      1123 rql 1125 (2067)
T KOG1822|consen 1123 RQL 1125 (2067)
T ss_pred             hHH
Confidence            443

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.66  E-value=0.025  Score=55.56  Aligned_cols=231  Identities=14%  Similarity=0.117  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHHHHhhCHH------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhc
Q 016814           90 EVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLK  163 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  163 (382)
                      .+|..-...+..+...+..+      .....++..+..+...+.-.+|..+--+...+..         .++....++.+
T Consensus       170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt---------~Lv~va~~Ls~  240 (1048)
T KOG2011|consen  170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMT---------ALVSVALNLSS  240 (1048)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH
Confidence            37777888888887776652      2334455555555555555677777555444432         12222222221


Q ss_pred             C-------------CChHHHHHHHHhhHH-hhhhhchhhHhhhHHHHHHHH-----hcCCCchHHHHHHHHhHHHHhhhc
Q 016814          164 D-------------EFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVEL-----AEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       164 d-------------~~~~vr~~~~~~l~~-~~~~~~~~~~~~~llp~l~~~-----~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      .             ....-|. -+..+-. ....-+...-...++..+...     ..|-.+.+|..+++.|+..+..++
T Consensus       241 ~~~~tskQleaEr~k~r~~ra-rle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP  319 (1048)
T KOG2011|consen  241 HNDKTSKQLEAERNKSRGNRA-RLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYP  319 (1048)
T ss_pred             hhHHHHHHHHHHhcccccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhcc
Confidence            0             0111111 1111111 111111111113344433332     267889999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh---Ch-HHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhcc
Q 016814          225 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF---GP-EWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       225 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~---~~-~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~  299 (382)
                      ..++....+..+...|.|.+..||...++++..+.+.-   +. +.|.+.+-..++++. .|-+..||...+..+.....
T Consensus       320 ~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~  399 (1048)
T KOG2011|consen  320 EIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSS  399 (1048)
T ss_pred             HHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999998862   22 345666667777776 55667888888777666532


Q ss_pred             --ccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          300 --VMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       300 --~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                        .+..+     =+-.+..+.-|.++.++.+|...+-.
T Consensus       400 ~g~L~d~-----di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  400 SGLLSDK-----DILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             ccccChh-----HHHHHHHHHhccCcchHHHHHHHHHH
Confidence              22222     22345667778889998888877643

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=97.61  E-value=0.01  Score=57.30  Aligned_cols=250  Identities=16%  Similarity=0.145  Sum_probs=121.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchH
Q 016814           51 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH  129 (382)
Q Consensus        51 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~  129 (382)
                      .+.......+..+...+..-.. ..+.....+.... .....|...++++...+.    .    ..+..+.+++......
T Consensus       340 ~~~~~~~~~f~~Lv~~lr~l~~-~~L~~l~~~~~~~~~~~~~r~~~lDal~~aGT----~----~av~~i~~~I~~~~~~  410 (618)
T PF01347_consen  340 PVSKETLSKFSRLVRLLRTLSY-EDLEELYKQLKSKSKKEQARKIFLDALPQAGT----N----PAVKFIKDLIKSKKLT  410 (618)
T ss_dssp             S--TTHHHHHHHHHHHHTTS-H-HHHHHHHHHHTTS---HHHHHHHHHHHHHH-S----H----HHHHHHHHHHHTT-S-
T ss_pred             ccchhHHHHHHHHHHHHhcCCH-HHHHHHHHHHHhhccHHHHHHHHHHHHHHcCC----H----HHHHHHHHHHHcCCCC
Confidence            3444444446666655554332 2233333222222 246677777777766443    2    1123333333322211


Q ss_pred             HHHHHHHHHHhhcccc-ChHhHHHhhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhchh----------------h
Q 016814          130 VRSALASVIMGMAPLL-GKDATIEQLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGID----------------L  188 (382)
Q Consensus       130 vr~~a~~~l~~l~~~~-~~~~~~~~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~~----------------~  188 (382)
                      - ..+...+..+.... .+   ...++..+..+++.    .++.++..++-+++.+....-..                .
T Consensus       411 ~-~ea~~~l~~l~~~~~~P---t~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~  486 (618)
T PF01347_consen  411 D-DEAAQLLASLPFHVRRP---TEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEK  486 (618)
T ss_dssp             H-HHHHHHHHHHHHT--------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GG
T ss_pred             H-HHHHHHHHHHHhhcCCC---CHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHH
Confidence            1 12333333333222 11   12344444444432    46789999999988876542211                2


Q ss_pred             HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc---hhHHHHHHHHHHHHHHHHhChH
Q 016814          189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK---VYSIRDAAANNLKRLAEEFGPE  265 (382)
Q Consensus       189 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~---~~~vr~~a~~~l~~~~~~~~~~  265 (382)
                      +.+.+...+.......+...+..++++|+.+..        +..++.+...+.+.   ...+|.+|+.++..+.... ++
T Consensus       487 ~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~--------~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-~~  557 (618)
T PF01347_consen  487 YVPYLEQELKEAVSRGDEEEKIVYLKALGNLGH--------PESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-PE  557 (618)
T ss_dssp             GTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT---------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--HH
T ss_pred             HHHHHHHHHHHHhhccCHHHHHHHHHHhhccCC--------chhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-cH
Confidence            223344444444455666777888888887642        23455566666655   7889999999999885543 33


Q ss_pred             HHHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhh-ccCCCccHHHHHHHHH
Q 016814          266 WAMQHITPQVLEMINNP--HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINA-SKDRVPNIKFNVAKVL  333 (382)
Q Consensus       266 ~~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l  333 (382)
                      .    +.+.++..+.|.  +..+|.+|...+..--   +.......    +... -.+++.+|+......|
T Consensus       558 ~----v~~~l~~I~~n~~e~~EvRiaA~~~lm~~~---P~~~~l~~----i~~~l~~E~~~QV~sfv~S~L  617 (618)
T PF01347_consen  558 K----VREILLPIFMNTTEDPEVRIAAYLILMRCN---PSPSVLQR----IAQSLWNEPSNQVASFVYSHL  617 (618)
T ss_dssp             H----HHHHHHHHHH-TTS-HHHHHHHHHHHHHT------HHHHHH----HHHHHTT-S-HHHHHHHHHHH
T ss_pred             H----HHHHHHHHhcCCCCChhHHHHHHHHHHhcC---CCHHHHHH----HHHHHhhCchHHHHHHHHHhc
Confidence            3    444444444443  4779999988886521   22222222    2333 3577777877665544

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.61  E-value=0.074  Score=51.07  Aligned_cols=241  Identities=15%  Similarity=0.093  Sum_probs=151.1

Q ss_pred             hHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhh--CHHHHHHhhhH-hhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814           76 LVPAYVRLL-RDNEAEVRIAAAGKVTKFCRIL--NPELAIQHILP-CVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  151 (382)
Q Consensus        76 ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~--~~~~~~~~il~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  151 (382)
                      ++..+...+ ....|..-..+..+++.+.+..  .+... ..++. .+..+..|..+.+|..+++++..+++.-.-..+.
T Consensus       450 l~~~~~~~l~~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~-~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~~~  528 (1005)
T KOG2274|consen  450 LTIMIDNGLVYQESPFLLLRAFLTISKFSSSTVINPQLL-QHFLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLSLQ  528 (1005)
T ss_pred             HHHHHHhhcccccCHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHhhccCCCCchhHHHHHHHHhccCceeccccc
Confidence            343444433 3345665557888888777762  33322 23333 3444567888999999999999998443333455


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHh--cCCCchHHHHHHHHhHHHHh---hhc
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELA--EDRHWRVRLAIIEYIPLLAS---QLG  224 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~--~d~~~~vr~~~~~~l~~l~~---~~~  224 (382)
                      +.++..+.++..+.+.+|-.....+++.+++.=+..  .....+.|.+..+.  ..+++.|-..+-..+..+++   ..|
T Consensus       529 p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g  608 (1005)
T KOG2274|consen  529 PMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYG  608 (1005)
T ss_pred             hHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Confidence            788888899999999999999999998887653322  22245666655443  23344554544445544443   444


Q ss_pred             hhhhHHHHHHHHHHHhccch----hHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHH
Q 016814          225 VGFFDDKLGALCMQWLQDKV----YSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINN-PHYLYRMTILRAISL  296 (382)
Q Consensus       225 ~~~~~~~l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~  296 (382)
                      +.  ...++|.+.+.+.-+.    ......++..+..++++-++   +.+....+|.+.+..-+ .+...-+.+-+|+..
T Consensus       609 ~m--~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra  686 (1005)
T KOG2274|consen  609 PM--QERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRA  686 (1005)
T ss_pred             ch--HHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHH
Confidence            43  3568888888887666    55677788888888886554   23556677777765543 345677788888888


Q ss_pred             hccccCh---------hhhhhhhHHHHHhhcc
Q 016814          297 LAPVMGS---------EITCSRLLPVVINASK  319 (382)
Q Consensus       297 l~~~~~~---------~~~~~~~l~~l~~~l~  319 (382)
                      +...-.+         ..-...++..+-++|+
T Consensus       687 ~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLd  718 (1005)
T KOG2274|consen  687 LISVTLEQLLTWHDEPGHNLWYIMQVLSQLLD  718 (1005)
T ss_pred             HHhcCHHHHHhhccCCCccHHHHHHHHHHHcC
Confidence            7654211         1112356666666664

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=97.57  E-value=0.018  Score=54.90  Aligned_cols=217  Identities=17%  Similarity=0.182  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC--hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-
Q 016814          128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-  204 (382)
Q Consensus       128 ~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~-  204 (382)
                      +..|.....++.....    .    .-+..+.+.+....  +.....++..+........     ..++..+..+++++ 
T Consensus       340 ~~~r~~~~Dal~~~GT----~----~a~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt-----~~~l~~l~~l~~~~~  406 (574)
T smart00638      340 KKARRIFLDAVAQAGT----P----PALKFIKQWIKNKKITPLEAAQLLAVLPHTARYPT-----EEILKALFELAESPE  406 (574)
T ss_pred             HHHHHHHHHHHHhcCC----H----HHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCC-----HHHHHHHHHHhcCcc
Confidence            5566666666665543    1    22333444443322  2222333333333322222     45566666666543 


Q ss_pred             ---CchHHHHHHHHhHHHHhhhch------hhhHHHHHHHHH----HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814          205 ---HWRVRLAIIEYIPLLASQLGV------GFFDDKLGALCM----QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  271 (382)
Q Consensus       205 ---~~~vr~~~~~~l~~l~~~~~~------~~~~~~l~~~l~----~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  271 (382)
                         +..+|..+.-.++.+......      ....+.+.+.+.    ...++.+.+.+..++++||.+..    ......+
T Consensus       407 ~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~----~~~i~~l  482 (574)
T smart00638      407 VQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGH----PSSIKVL  482 (574)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhccCC----hhHHHHH
Confidence               456888888888888764321      111234444444    44445566677888888886543    2222223


Q ss_pred             HHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHH
Q 016814          272 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRP  351 (382)
Q Consensus       272 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~  351 (382)
                      .|.+. .-.+....+|..|+.++..++...... ..+.+++.+.+-  +..+++|.+|...|-..-..       ...+.
T Consensus       483 ~~~l~-~~~~~~~~iR~~Av~Alr~~a~~~p~~-v~~~l~~i~~n~--~e~~EvRiaA~~~lm~t~P~-------~~~l~  551 (574)
T smart00638      483 EPYLE-GAEPLSTFIRLAAILALRNLAKRDPRK-VQEVLLPIYLNR--AEPPEVRMAAVLVLMETKPS-------VALLQ  551 (574)
T ss_pred             HHhcC-CCCCCCHHHHHHHHHHHHHHHHhCchH-HHHHHHHHHcCC--CCChHHHHHHHHHHHhcCCC-------HHHHH
Confidence            33332 112334789999999999887655543 445555555432  34577999998887655321       12223


Q ss_pred             HHH-HhcCCCCccHHhHHHHHH
Q 016814          352 CLV-ELTEDPDVDVRFFATQAI  372 (382)
Q Consensus       352 ~l~-~l~~d~~~~vr~~a~~al  372 (382)
                      .+. .+..|++.+|+......|
T Consensus       552 ~ia~~l~~E~~~QV~sfv~S~l  573 (574)
T smart00638      552 RIAELLNKEPNLQVASFVYSHI  573 (574)
T ss_pred             HHHHHHhhcCcHHHHHHhHHhh
Confidence            333 356688899988776554

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.09  Score=50.37  Aligned_cols=363  Identities=10%  Similarity=0.065  Sum_probs=195.6

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC-----HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814           12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS-----WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD   86 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~-----~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d   86 (382)
                      ..|+...+.+......++ +...+.+...+.+...|.+     |..-++.+-++..+++.+|....  .-+|.+++..-.
T Consensus       439 ~YR~diSD~~~~~Y~ilg-d~ll~~L~~~l~q~~aa~d~~p~s~~~tEaci~~~~sva~~~~~t~~--~~i~rl~~~~as  515 (982)
T KOG2022|consen  439 SYRKDISDLLMSSYSILG-DGLLDFLIDTLEQALAAGDEDPDSLNRTEACIFQFQSVAEYLGETES--TWIPRLFETSAS  515 (982)
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHHHHHHHhhcCcchh--HHHHHHHHhccc
Confidence            567777777777777666 4555666666667666555     77778888899999999988653  347777665532


Q ss_pred             -----CcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHH
Q 016814           87 -----NEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIF  158 (382)
Q Consensus        87 -----~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l  158 (382)
                           .++..-..+...++.++..++.. ...+..+|.+...+..+..  -..+...+..+++....+.  ..+.++...
T Consensus       516 ik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~Lh~sk~--s~q~i~tl~tlC~~C~~~L~py~d~~~a~~  593 (982)
T KOG2022|consen  516 IKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQGLHNSKE--SEQAISTLKTLCETCPESLDPYADQFSAVC  593 (982)
T ss_pred             cccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHHhcCchH--HHHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence                 36778888999999998887665 4456677888887754333  3345555777765444321  224555555


Q ss_pred             HHhhcCC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHh---------cCCCchHHHHHHH---HhHHHHhhhc
Q 016814          159 LSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA---------EDRHWRVRLAIIE---YIPLLASQLG  224 (382)
Q Consensus       159 ~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~---------~d~~~~vr~~~~~---~l~~l~~~~~  224 (382)
                      .+.++..  .+..|....+++|.+.+...++...+.+...+..++         +-+++.-+...+-   .++.+...+.
T Consensus       594 ~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~  673 (982)
T KOG2022|consen  594 YEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLINPILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLI  673 (982)
T ss_pred             HHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccC
Confidence            5555443  478899999999999888776655444433332221         1122222222222   3334433321


Q ss_pred             -h---------------------hhhHHHHHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-
Q 016814          225 -V---------------------GFFDDKLGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-  279 (382)
Q Consensus       225 -~---------------------~~~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-  279 (382)
                       +                     -.+..+++|.+.+.+.  -.+..|-++++....+=....+.. |....+|.+..++ 
T Consensus       674 ~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~~~s~vve~~C~i~~~~v~~~~~s-F~~p~l~~l~~Fi~  752 (982)
T KOG2022|consen  674 NKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWLGLSDVVEASCIIMVKGVRSLLTS-FPEPMLPSLCPFIV  752 (982)
T ss_pred             CCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHhcccccccc-chhhhHHHHHHHHH
Confidence             1                     0123445555555433  123344444444443333333333 3333444444333 


Q ss_pred             ---cCcchHH-HHHHHHHHHHh-ccccChh------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------
Q 016814          280 ---NNPHYLY-RMTILRAISLL-APVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------  342 (382)
Q Consensus       280 ---~~~~~~~-r~~a~~~l~~l-~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------  342 (382)
                         ..+-... -..++..+... .+.+++.      .+.++.+-.+-+.--.+++++-......+..+.+....      
T Consensus       753 r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~~~~q~sl~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~  832 (982)
T KOG2022|consen  753 RFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMANAFQQSLLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSM  832 (982)
T ss_pred             HhccchHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccch
Confidence               2222111 11111111111 1112211      11112111111111133455666666666666654321      


Q ss_pred             HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          343 SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       343 ~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ..+.+.+++.-..+++.|.+-.-.++.+.+..++..-+
T Consensus       833 ~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~  870 (982)
T KOG2022|consen  833 LAFTSLILICAFILLNSPEPTTIRAASQFLTALATYAT  870 (982)
T ss_pred             HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhcc
Confidence            24567777777778888887766777777766655433

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=97.46  E-value=0.0038  Score=61.04  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=112.4

Q ss_pred             hchhhhHHHHHHHHHHHhcc----chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHh
Q 016814          223 LGVGFFDDKLGALCMQWLQD----KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLL  297 (382)
Q Consensus       223 ~~~~~~~~~l~~~l~~~l~d----~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l  297 (382)
                      +|++.....+.|++...++.    .+++++.+|.-+++++.- ++.+ |.+.-+|.++..++ .+++.+|..+.-+++.+
T Consensus       911 ~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~-iSa~-fces~l~llftimeksp~p~IRsN~VvalgDl  988 (1251)
T KOG0414|consen  911 YGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC-ISAE-FCESHLPLLFTIMEKSPSPRIRSNLVVALGDL  988 (1251)
T ss_pred             cChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh-hhHH-HHHHHHHHHHHHHhcCCCceeeecchheccch
Confidence            46566667788999888843    468999999999999975 3333 45557788888886 78899999999999999


Q ss_pred             ccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          298 APVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       298 ~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      +-.++.  ..+-..+.+...+.|+++.||.+|+-.|+.+...  ...-....++.+..++.|++.++|..|-..+..+
T Consensus       989 av~fpn--lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILn--dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~El 1062 (1251)
T KOG0414|consen  989 AVRFPN--LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILN--DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKEL 1062 (1251)
T ss_pred             hhhccc--ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHh--hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            866654  4556677888999999999999999999887642  1122345567777788999999998887554443

>KOG1822 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.22  Score=51.92  Aligned_cols=234  Identities=15%  Similarity=0.170  Sum_probs=153.5

Q ss_pred             hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhhh
Q 016814          106 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       106 ~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .+++.+.......+...+..+++..|-.+..+++.++...+...+...+...+.+-+++ .++..|..-.-+++.+.++.
T Consensus       868 lg~e~v~~~~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyv  947 (2067)
T KOG1822|consen  868 LGPEEVRSSALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYV  947 (2067)
T ss_pred             cCHHHHHHHHHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhc
Confidence            34555555566677778888999999999999999999988777665556555555554 56677777788888888776


Q ss_pred             ch---hhHhhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHH-hccc--hhHHHHHHHHHH
Q 016814          185 GI---DLLSQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQW-LQDK--VYSIRDAAANNL  255 (382)
Q Consensus       185 ~~---~~~~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~-l~d~--~~~vr~~a~~~l  255 (382)
                      |.   ..-...-+..+..+..|++. .|+...+..+..+...-|+-+..  ..-+..+..+ +.++  ..+++.+--.++
T Consensus       948 gs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~ 1027 (2067)
T KOG1822|consen  948 GSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCF 1027 (2067)
T ss_pred             cCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhcccc
Confidence            53   22213334566666677765 99999999999998877765422  2222233333 3333  345666655555


Q ss_pred             H------HHHHHhChHH-----------HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          256 K------RLAEEFGPEW-----------AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       256 ~------~~~~~~~~~~-----------~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      .      .+....|++.           ++...+-.+.-.+.+++.-+..+++.++.++--.-+...-.+.+++.+...+
T Consensus      1028 ~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqqlhlFapr~~n~~~lV~~L~~~l 1107 (2067)
T KOG1822|consen 1028 NGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQLHLFAPRHVNLDSLVLQLCSLL 1107 (2067)
T ss_pred             ccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHhhcchhccHHHHHHHHHHHh
Confidence            5      6666665531           2333333444445666788889999999998654444444567778888877


Q ss_pred             cCCCccHHHHHHHHHHHHhhh
Q 016814          319 KDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       319 ~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      ....--.|......+.++...
T Consensus      1108 ~s~~~i~r~~~~~clrql~~R 1128 (2067)
T KOG1822|consen 1108 SSSYLILRRASFSCLRQLVQR 1128 (2067)
T ss_pred             cchhhhhhhhHHhhhhHHhHH
Confidence            777666777777777666543

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.12  Score=48.65  Aligned_cols=303  Identities=14%  Similarity=0.069  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHHHhccCh-----hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC
Q 016814           13 VRLLAVEGCAALGKLLEP-----QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN   87 (382)
Q Consensus        13 vR~~a~~~l~~l~~~~~~-----~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~   87 (382)
                      -...|.+.+..+....++     ......+.+.+....+++.-..|..+|..++.+...+.......++.....++++++
T Consensus       432 q~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn  511 (970)
T COG5656         432 QAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNN  511 (970)
T ss_pred             HHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcC
Confidence            344577777777663332     234556778888888999999999999999999888877766667788888899998


Q ss_pred             cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHH-Hhhcccc---ChHh---HHHhhHH
Q 016814           88 EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVI-MGMAPLL---GKDA---TIEQLLP  156 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l-~~l~~~~---~~~~---~~~~l~~  156 (382)
                      +-.|+..|+.++.-+.......    .+....+..+..+.++-+-.+-..+...+ +.+.+.+   +++.   ..++++.
T Consensus       512 ~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlk  591 (970)
T COG5656         512 HLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLK  591 (970)
T ss_pred             CcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHH
Confidence            8999999999998887654222    22233344444455554444333333222 2232222   2222   2244444


Q ss_pred             HHHHhhcCC---ChH------HHHHHHHhhHHhhhhhchh-----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH--
Q 016814          157 IFLSLLKDE---FPD------VRLNIISKLDQVNQVIGID-----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA--  220 (382)
Q Consensus       157 ~l~~~l~d~---~~~------vr~~~~~~l~~~~~~~~~~-----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~--  220 (382)
                      +...++.++   +..      ...+.++.+..+.-.+...     .....+.|.+.-.+++.....-..+++.+....  
T Consensus       592 iaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLSlen~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~  671 (970)
T COG5656         592 IAQSLLENSSDTSSVVDDKQMAASGILRTIESMILSLENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFM  671 (970)
T ss_pred             HHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHH
Confidence            555555443   111      1222233333332222211     122456677776777666666666666655432  


Q ss_pred             -hhhchhhhHHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHHhChHH-----HHhhhHHHHHhhhcCcc--hHHHHHHH
Q 016814          221 -SQLGVGFFDDKLGALCMQWLQDKVY-SIRDAAANNLKRLAEEFGPEW-----AMQHITPQVLEMINNPH--YLYRMTIL  291 (382)
Q Consensus       221 -~~~~~~~~~~~l~~~l~~~l~d~~~-~vr~~a~~~l~~~~~~~~~~~-----~~~~l~~~l~~~l~~~~--~~~r~~a~  291 (382)
                       +.+.  .....+...+.+.+.|+.. .--+.+..++..++..-+.+.     +...+.......+.+..  -.-+..++
T Consensus       672 skeI~--pimwgi~Ell~~~l~~~~t~~y~ee~~~al~nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc  749 (970)
T COG5656         672 SKEIE--PIMWGIFELLLNLLIDEITAVYSEEVADALDNFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVC  749 (970)
T ss_pred             HHHhh--hhhhHHHHHHHhcccccchhhhHHHHHHHHHHHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHH
Confidence             1111  1223466666777777664 445667777888876543332     33333444444454443  35677888


Q ss_pred             HHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          292 RAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       292 ~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      ..+..++-+++.+ ...+-+|.+....
T Consensus       750 ~i~e~l~Ln~rd~-Ll~qy~plfi~va  775 (970)
T COG5656         750 RIIESLILNIRDE-LLSQYLPLFISVA  775 (970)
T ss_pred             HHHHHHHHHccch-hHHhhhHHHHHHH
Confidence            8888887777654 3334555555443

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=97.37  E-value=0.0016  Score=50.24  Aligned_cols=137  Identities=11%  Similarity=0.181  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhcc-----chhHHHHHHHHHHHHHHHHh--
Q 016814          191 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD-----KVYSIRDAAANNLKRLAEEF--  262 (382)
Q Consensus       191 ~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~--  262 (382)
                      ..+++.+..+++ +.+|.+|.++++.+|.+.. +++..+.     .......+     .+........     .....  
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k-----~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~   77 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHK-----SIQKSLDSKSSENSNDESTDISL-----PMMGISP   77 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHh-----cccccCCccccccccccchhhHH-----hhccCCC
Confidence            567777777764 3468999999999988764 3332221     11111111     1111111111     11111  


Q ss_pred             -ChHHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          263 -GPEWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       263 -~~~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                       ..+++....+..++..++|++ ...+.+++.++..+.+..|..  .+..+++|.++..+.......|....+-|+.+..
T Consensus        78 ~~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~  157 (160)
T PF11865_consen   78 SSEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS  157 (160)
T ss_pred             chHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence             235566677888888888886 445556777777666555543  6889999999998887777888888777777654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.29  E-value=0.0059  Score=41.92  Aligned_cols=81  Identities=19%  Similarity=0.114  Sum_probs=62.0

Q ss_pred             HHHhcCCCchHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHH
Q 016814          198 VELAEDRHWRVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVL  276 (382)
Q Consensus       198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~  276 (382)
                      ...+.|+...+|..++..+..+...-. .....+.++..+...++|++..|-.+|++.+..++...+.     .++|.++
T Consensus         9 l~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L~   83 (92)
T PF10363_consen    9 LSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPILL   83 (92)
T ss_pred             HHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHHH
Confidence            344578888888888888888887666 4444567888888889999999999999999998887643     4777777


Q ss_pred             hhhcCcc
Q 016814          277 EMINNPH  283 (382)
Q Consensus       277 ~~l~~~~  283 (382)
                      +.+.|.+
T Consensus        84 ~~y~~~~   90 (92)
T PF10363_consen   84 DEYADPS   90 (92)
T ss_pred             HHHhCcc
Confidence            7766543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.28  E-value=0.04  Score=53.68  Aligned_cols=225  Identities=16%  Similarity=0.123  Sum_probs=151.2

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc----ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHH---hhC
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR---ILN  107 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~---~~~  107 (382)
                      ++=+|++++.+-.+-.  |.-|+..|+.... +|+-.+    .-.++|..+++++++-.+.|..-.-.-.++..   .+.
T Consensus       471 PeQLPiVLQVLLSQvH--RlRAL~LL~RFLD-lGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ  547 (1387)
T KOG1517|consen  471 PEQLPIVLQVLLSQVH--RLRALVLLARFLD-LGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQ  547 (1387)
T ss_pred             hHhcchHHHHHHHHHH--HHHHHHHHHHHhc-cchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhH
Confidence            3445555554433333  4445666666554 344211    12489999999999999999887766666543   344


Q ss_pred             HHHHHHhhhHhhhhhcCC---CchHHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHh
Q 016814          108 PELAIQHILPCVKELSSD---SSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQV  180 (382)
Q Consensus       108 ~~~~~~~il~~l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~  180 (382)
                      .+.+++..-.++...+.+   -+++-|..++-.|..++..+..   ......++.+..+.++|. .+-.|..++-+|+.+
T Consensus       548 ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~L  627 (1387)
T KOG1517|consen  548 ADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRL  627 (1387)
T ss_pred             HHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            455555444455555554   2347788888889988876642   234467888888889885 799999999999999


Q ss_pred             hhhhchhhHh---hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh----chh--hh------------HHHHHH----H
Q 016814          181 NQVIGIDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL----GVG--FF------------DDKLGA----L  235 (382)
Q Consensus       181 ~~~~~~~~~~---~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~----~~~--~~------------~~~l~~----~  235 (382)
                      .+.+....+.   ...-..+..++.|+.++||.+++-+|+.+....    .+.  ..            .+.+++    .
T Consensus       628 W~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~  707 (1387)
T KOG1517|consen  628 WEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMS  707 (1387)
T ss_pred             hhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHH
Confidence            8877654442   233455666778999999999999999998753    110  00            122233    4


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814          236 CMQWLQDKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       236 l~~~l~d~~~~vr~~a~~~l~~~~~~~  262 (382)
                      +...++|.++-||...+.++..++...
T Consensus       708 ll~~vsdgsplvr~ev~v~ls~~~~g~  734 (1387)
T KOG1517|consen  708 LLALVSDGSPLVRTEVVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHHhh
Confidence            566788999999999999998887644

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=97.28  E-value=0.17  Score=47.77  Aligned_cols=293  Identities=13%  Similarity=0.183  Sum_probs=169.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCcccc-cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh-hCHHH---H---HHhhhHhh
Q 016814           48 KSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI-LNPEL---A---IQHILPCV  119 (382)
Q Consensus        48 ~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~-~~~~~---~---~~~il~~l  119 (382)
                      .++.+-....++++....-..-.... ...++.+.+.++  ..++|.+|+.++..+... +.|-.   .   .+.....+
T Consensus       205 ~npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dKL~lln~L~q~l~lf  282 (980)
T KOG2021|consen  205 VNPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDKLALLNMLNQTLELF  282 (980)
T ss_pred             CCchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence            37788888888888777655443322 346888888877  688999999999887653 44331   1   11111222


Q ss_pred             hhhcCC--CchHHHHHHHHHHHhhccccC--------------hHh---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHh
Q 016814          120 KELSSD--SSQHVRSALASVIMGMAPLLG--------------KDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQV  180 (382)
Q Consensus       120 ~~~~~d--~~~~vr~~a~~~l~~l~~~~~--------------~~~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~  180 (382)
                      -....|  .++.+-+...+.+..++..+-              ++.   ....++|++.+.++++..+.-......+...
T Consensus       283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy  362 (980)
T KOG2021|consen  283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY  362 (980)
T ss_pred             hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence            222233  556666666666666543221              011   1234678888888887777666655554443


Q ss_pred             hhhhchhh------H--hhh-HHHHHHHHh------cCCC----------chHHHHHHHHhHHHHhhhchhhhHHHHHHH
Q 016814          181 NQVIGIDL------L--SQS-LLPAIVELA------EDRH----------WRVRLAIIEYIPLLASQLGVGFFDDKLGAL  235 (382)
Q Consensus       181 ~~~~~~~~------~--~~~-llp~l~~~~------~d~~----------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~  235 (382)
                      ...+....      .  .+. ++-.+.+++      +|.+          ..+|..+-.....+. .+.++.+...+-..
T Consensus       363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s  441 (980)
T KOG2021|consen  363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS  441 (980)
T ss_pred             HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence            33322111      0  122 223333333      2222          135555444444443 45666666555444


Q ss_pred             HHHH---hccchhHHHHHHHHHHHHHHHHhChHH------------HHhhhHHHHHh--hhcCcchHHHHHHHHHHHHhc
Q 016814          236 CMQW---LQDKVYSIRDAAANNLKRLAEEFGPEW------------AMQHITPQVLE--MINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       236 l~~~---l~d~~~~vr~~a~~~l~~~~~~~~~~~------------~~~~l~~~l~~--~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      +...   .+.++|..-+.|+..+-.+.+.+..+.            .....++.++.  ...+++..+.....+.+.+..
T Consensus       442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~  521 (980)
T KOG2021|consen  442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN  521 (980)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence            4443   346789999999999999988764321            12234444432  345667777777777777766


Q ss_pred             cccChh-hhhhhhHHHHHh--hccCCCccHHHHHHHHHHHHhhhhhHH
Q 016814          299 PVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS  343 (382)
Q Consensus       299 ~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~i~~~~~~~  343 (382)
                      ..+..+ .....++..++.  ++.+.+..||..|...+..+.+.+..+
T Consensus       522 kff~~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLkkq  569 (980)
T KOG2021|consen  522 KFFSTESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLKKQ  569 (980)
T ss_pred             HHHhcchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHHHH
Confidence            666644 233444444442  466778999999999999888776543

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.26  E-value=0.13  Score=46.22  Aligned_cols=290  Identities=13%  Similarity=0.070  Sum_probs=138.8

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChH--hH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKD--AT  150 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~  150 (382)
                      ...++.+++.+++-+...++..+..++..-.   +......+...+...++.. +......++.++..+...-.-.  ..
T Consensus       103 ~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~  182 (429)
T cd00256         103 WEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFV  182 (429)
T ss_pred             hHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHH
Confidence            3444557777889999999999998875321   1123334455555555533 3455666778887776433311  12


Q ss_pred             HHhhHHHHHHhhcCCC--hHHHHHHHHhhHHh--hhhhchhhHhhhHHHHHHHHhcCCC-chHHHHHHHHhHHHHhhhc-
Q 016814          151 IEQLLPIFLSLLKDEF--PDVRLNIISKLDQV--NQVIGIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLASQLG-  224 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~~--~~~~~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~~~~-  224 (382)
                      ....++.+.++++...  .+..-.++-++-.+  ............++|.+.+++++.. .+|-+-++..+..+...-. 
T Consensus       183 ~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~  262 (429)
T cd00256         183 LADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVD  262 (429)
T ss_pred             HccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccc
Confidence            2335556665554322  23333333333222  1110001111357777777765433 3344444445555544211 


Q ss_pred             --------hhhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHH-Hh---C-hHHHHhhhHHHHHhh-hcCcc-hHHH
Q 016814          225 --------VGFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAE-EF---G-PEWAMQHITPQVLEM-INNPH-YLYR  287 (382)
Q Consensus       225 --------~~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~-~~---~-~~~~~~~l~~~l~~~-l~~~~-~~~r  287 (382)
                              ...+...+.+.+..+...  .|+++.+. +..+....+ .+   . -+.|...+...-++. -.+.+ ..=|
T Consensus       263 ~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~ed-l~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~  341 (429)
T cd00256         263 REVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDD-LKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWR  341 (429)
T ss_pred             cchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHH
Confidence                    111111233333333221  23344333 222222222 11   1 122222222111111 00111 1123


Q ss_pred             HHHHHHHHHhccccChhhhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhh--HHHHH-HhHHHHHHHhcCCCCcc
Q 016814          288 MTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVD--QSMVE-KTIRPCLVELTEDPDVD  363 (382)
Q Consensus       288 ~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~--~~~~~-~~i~~~l~~l~~d~~~~  363 (382)
                      +.+-.+-        .+.  -+++-.+...+ ++..+.+-..|+.=+|.+...++  ..... -.....+-++.+++|++
T Consensus       342 EN~~kf~--------~~~--~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~  411 (429)
T cd00256         342 ENADRLN--------EKN--YELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN  411 (429)
T ss_pred             HHHHHHH--------hcc--hHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH
Confidence            3332221        111  23444455555 34456677888888999988763  33332 23455566778889999


Q ss_pred             HHhHHHHHHHHHHH
Q 016814          364 VRFFATQAIQSIDH  377 (382)
Q Consensus       364 vr~~a~~al~~~~~  377 (382)
                      ||..|..|++.+.-
T Consensus       412 Vr~eAL~avQklm~  425 (429)
T cd00256         412 VRYEALLAVQKLMV  425 (429)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998753

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.052  Score=46.59  Aligned_cols=174  Identities=14%  Similarity=0.053  Sum_probs=105.9

Q ss_pred             CCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HH-HHhhhHHHHHhh
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EW-AMQHITPQVLEM  278 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~-~~~~l~~~l~~~  278 (382)
                      .+.+-+..++..|..++..+....  ..-..+..+...+++.+..+|..|+..++..+++-.+  +. +....++.++..
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            345667777777877777664321  1112233344488999999999999999999887544  11 233456666666


Q ss_pred             hcC-cchHHHHHHHHHHHHhccccChh--hh-hhhhHHHHHhhccC--CCccHHHHHHHHHHHHhhhhhH--HHHHH-hH
Q 016814          279 INN-PHYLYRMTILRAISLLAPVMGSE--IT-CSRLLPVVINASKD--RVPNIKFNVAKVLQSLIPIVDQ--SMVEK-TI  349 (382)
Q Consensus       279 l~~-~~~~~r~~a~~~l~~l~~~~~~~--~~-~~~~l~~l~~~l~d--~~~~vR~~a~~~l~~i~~~~~~--~~~~~-~i  349 (382)
                      +.. +.-.+|..|+.+++.+.++..+-  .| ...=...+...+.+  .+...+..++..++.+......  +.... .+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence            653 44678899999999998876542  11 11123456667777  4455677788888877764332  12222 22


Q ss_pred             HHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          350 RPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       350 ~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ...+..+...-+.+++.++..++-....
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            2233334455566777777776655544

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=97.21  E-value=0.06  Score=47.58  Aligned_cols=106  Identities=13%  Similarity=0.056  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHH
Q 016814           13 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEV   91 (382)
Q Consensus        13 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~V   91 (382)
                      -|.....++..+.. .   .....+...+..++ ++.++.....++.+++.-...++. .....++..+.+.++|..+.+
T Consensus         3 ~r~~~~~~L~~l~~-~---~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~v   77 (339)
T PF12074_consen    3 QRVLHASMLSSLPS-S---SLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPV   77 (339)
T ss_pred             HHHHHHHHHHhCCC-c---chHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcH
Confidence            45556666665544 1   13444555555544 578889999999999998888833 334678999999999999999


Q ss_pred             HHHHHHHHHHHHH---hhCHHHHHHhhhHhhhhhc
Q 016814           92 RIAAAGKVTKFCR---ILNPELAIQHILPCVKELS  123 (382)
Q Consensus        92 R~~a~~~l~~l~~---~~~~~~~~~~il~~l~~~~  123 (382)
                      |..-+..++....   .-....+...++|.+.+.+
T Consensus        78 R~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~  112 (339)
T PF12074_consen   78 RRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSL  112 (339)
T ss_pred             HHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHH
Confidence            9999999998865   1111233344555555543

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=97.19  E-value=0.0045  Score=42.52  Aligned_cols=65  Identities=18%  Similarity=0.112  Sum_probs=30.5

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814           79 AYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  143 (382)
Q Consensus        79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~  143 (382)
                      ..+..++|+.+.||..++..|.++++.-. .....+.++..+.+.++|+++.|=-.+++.+..++.
T Consensus         7 ~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~   72 (92)
T PF10363_consen    7 EALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALAD   72 (92)
T ss_pred             HHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence            34444455555555555555555554444 333333444444444444444444444444444443

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=97.12  E-value=0.022  Score=44.31  Aligned_cols=114  Identities=18%  Similarity=0.147  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHh---ccccCh
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLL---APVMGS  303 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l---~~~~~~  303 (382)
                      +.++|.+...+.+.+..-|--|.+.+..+.+..+.+.   ...++++.+...++..+..+..+++.++..+   .+..|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            5788999999998888888899999999988744443   4566777788889999999999999999999   667776


Q ss_pred             h--hhhhhhHHHHHhhccC-----------CCccHHHHHHHHHHHHhhhhhHH
Q 016814          304 E--ITCSRLLPVVINASKD-----------RVPNIKFNVAKVLQSLIPIVDQS  343 (382)
Q Consensus       304 ~--~~~~~~l~~l~~~l~d-----------~~~~vR~~a~~~l~~i~~~~~~~  343 (382)
                      .  ++..+++|.+--+.+.           ...+++...-++|..+-..-|++
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d  169 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD  169 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence            5  6778888877633222           23557777777777766655554

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=97.10  E-value=0.21  Score=45.28  Aligned_cols=256  Identities=11%  Similarity=0.095  Sum_probs=144.6

Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-h-HhHHHhhHHHH
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-K-DATIEQLLPIF  158 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-~-~~~~~~l~~~l  158 (382)
                      .|++|.--..+.+.|..+......+.    +...++..+..++.++++.-|......+..+-..+. . ......+...+
T Consensus       100 ~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~~  179 (409)
T PF01603_consen  100 LEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNIF  179 (409)
T ss_dssp             --TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHHH
T ss_pred             cccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            45678777788888888877655543    455788888999999999999999998888764433 2 22335555666


Q ss_pred             HHhhcC-CChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCch-HHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          159 LSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWR-VRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       159 ~~~l~d-~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~-vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      .+++.+ ....--..+++.++.+......   +.....+...+..+.+.+... ....+..++..+...- +.. ...++
T Consensus       180 ~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd-p~l-~~~~i  257 (409)
T PF01603_consen  180 YRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD-PSL-AEPVI  257 (409)
T ss_dssp             HHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH--GGG-HHHHH
T ss_pred             HHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC-chh-HHHHH
Confidence            666553 3445555666677776665431   111123334444444555443 2455555555555422 221 22344


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH---HhhhHHHHHhhhcCcchHHHHHHHHHHHHh--ccccCh--hhh
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA---MQHITPQVLEMINNPHYLYRMTILRAISLL--APVMGS--EIT  306 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~---~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l--~~~~~~--~~~  306 (382)
                      ..+.+..--.+..-....+.-+..+.+.++++.+   ...++..+...+.+++..|-+.|+..+..=  ...+..  ...
T Consensus       258 ~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~~~i  337 (409)
T PF01603_consen  258 KGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNSRVI  337 (409)
T ss_dssp             HHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTHHHH
T ss_pred             HHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhChHHH
Confidence            4444443333444444556777777777766544   345666677788899999988888655331  111111  123


Q ss_pred             hhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHH
Q 016814          307 CSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQS  343 (382)
Q Consensus       307 ~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~  343 (382)
                      ...++|.+.+. -++.+..||..+..++..+.. ++++
T Consensus       338 ~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~~  374 (409)
T PF01603_consen  338 LPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDPK  374 (409)
T ss_dssp             HHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCHH
Confidence            34444444442 246678899999999998865 4444

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=97.09  E-value=0.2  Score=45.09  Aligned_cols=175  Identities=10%  Similarity=0.005  Sum_probs=86.3

Q ss_pred             CCchHHHHHHHHHHHHHHhccCh--hhhh------hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc---ccch
Q 016814            8 NDQDSVRLLAVEGCAALGKLLEP--QDCV------AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT---RMDL   76 (382)
Q Consensus         8 d~~~~vR~~a~~~l~~l~~~~~~--~~~~------~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~l   76 (382)
                      ...+.+.+..+..+..+....+.  ..+.      +.....+..++..+|+.+...++..+..+...-.....   ...+
T Consensus        65 ~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~  144 (429)
T cd00256          65 IDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLAKMEGSDLDYY  144 (429)
T ss_pred             cCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCccccchhHHHHH
Confidence            34455556666666655554322  1111      11122233366677889999999999988753322111   1124


Q ss_pred             HHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHH--H--HHHHHhhccccChHh
Q 016814           77 VPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSA--L--ASVIMGMAPLLGKDA  149 (382)
Q Consensus        77 l~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~--a--~~~l~~l~~~~~~~~  149 (382)
                      .+.+...+..+ +...+..++.++..+.+.-.-  -......++.+..+++.....++..  +  +-++-.+-.......
T Consensus       145 ~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~  224 (429)
T cd00256         145 FNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVL  224 (429)
T ss_pred             HHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhh
Confidence            44555555543 355666677888777553221  1223345566666654322222222  2  222222222111111


Q ss_pred             HHHhhHHHHHHhhcCCC-hHHHHHHHHhhHHhhh
Q 016814          150 TIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQ  182 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~~~~  182 (382)
                      ....++|.+.+.+++.. +.|-+-++..+..+..
T Consensus       225 ~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         225 KRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             ccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            22568888888887743 4444444455555444

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.07  E-value=0.027  Score=44.20  Aligned_cols=26  Identities=35%  Similarity=0.299  Sum_probs=21.6

Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHH
Q 016814          236 CMQWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       236 l~~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                      +.-++.|++.++|.+|+..+..+.+.
T Consensus        45 lt~il~Dp~~kvR~aA~~~l~~lL~g   70 (182)
T PF13251_consen   45 LTCILKDPSPKVRAAAASALAALLEG   70 (182)
T ss_pred             hHHHHcCCchhHHHHHHHHHHHHHHc
Confidence            34567899999999999999998875

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=97.07  E-value=0.018  Score=50.58  Aligned_cols=139  Identities=19%  Similarity=0.267  Sum_probs=85.6

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-------CchHHHHHHHHhHHHHhh--h
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-------HWRVRLAIIEYIPLLASQ--L  223 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~-------~~~vr~~~~~~l~~l~~~--~  223 (382)
                      ..+..+.+.+.+.+...|..++.++..       |.-.+.++|.+..++.+.       ++..-...++....+...  +
T Consensus       178 ~yf~~It~a~~~~~~~~r~~aL~sL~t-------D~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l  250 (343)
T cd08050         178 LYFEEITEALVGSNEEKRREALQSLRT-------DPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNL  250 (343)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHhcc-------CCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCC
Confidence            344555556666677778777666543       222267778777765332       444444445555554432  2


Q ss_pred             chhhhHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcc--hHHHHH
Q 016814          224 GVGFFDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPH--YLYRMT  289 (382)
Q Consensus       224 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~--~~~r~~  289 (382)
                      .-+.+..+++|.++.++          .++.|.+|..|+..++.++..++...  +...+...+.+.+.|+.  ......
T Consensus       251 ~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YG  330 (343)
T cd08050         251 HLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYG  330 (343)
T ss_pred             chHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhH
Confidence            33445567888877665          34668888888888888888887642  45556666666666554  344667


Q ss_pred             HHHHHHHhc
Q 016814          290 ILRAISLLA  298 (382)
Q Consensus       290 a~~~l~~l~  298 (382)
                      |+..+..++
T Consensus       331 Ai~GL~~lG  339 (343)
T cd08050         331 AIVGLSALG  339 (343)
T ss_pred             HHHHHHHhC
Confidence            777776665

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>PF13251 DUF4042: Domain of unknown function (DUF4042)

Probab=97.07  E-value=0.021  Score=44.78  Aligned_cols=28  Identities=29%  Similarity=0.309  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHhccChh---hhhhhhhhh
Q 016814           13 VRLLAVEGCAALGKLLEPQ---DCVAHILPV   40 (382)
Q Consensus        13 vR~~a~~~l~~l~~~~~~~---~~~~~ll~~   40 (382)
                      ||..|+.++..+++..++.   .+|..++|-
T Consensus         2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~   32 (182)
T PF13251_consen    2 VRQAALQCLQALAKSTDKRSLFGYWPALLPD   32 (182)
T ss_pred             hhHHHHHHHHHHHHhcCCceeHhhHHHHCCC
Confidence            7888888888888876553   335555554

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=97.05  E-value=0.28  Score=46.00  Aligned_cols=106  Identities=15%  Similarity=0.143  Sum_probs=84.8

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      +..+.+++++++...|.+.++.++++...+.++        .-.+.++..+.+-+.|.+|.+|..++..+..+...-.+-
T Consensus       301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~  380 (1128)
T COG5098         301 YEHFDELLDSESFTLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKT  380 (1128)
T ss_pred             HHHHHHHhcccchhHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccc
Confidence            566778899999999999999999998876433        234568888889999999999999999998887543321


Q ss_pred             h-HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814          149 A-TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       149 ~-~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~  182 (382)
                      . ....+.......+.|.+.-||+++++.+..+.-
T Consensus       381 ~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~  415 (1128)
T COG5098         381 VGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM  415 (1128)
T ss_pred             cchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence            1 135677788888999999999999999888654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.04  E-value=0.32  Score=46.33  Aligned_cols=281  Identities=14%  Similarity=0.113  Sum_probs=154.4

Q ss_pred             hHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHhHHHh
Q 016814           76 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        76 ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      -++.+...+.+ +-.+-|..|+.+|..+++....+.....+-|.+..+-.|- ++..-..+...+..+...=+.      
T Consensus        23 TI~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~------   96 (970)
T KOG0946|consen   23 TIEKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS------   96 (970)
T ss_pred             HHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc------
Confidence            45555444433 3466799999999999987766655545544444444442 344444444444444322110      


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHH-hhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQ-VNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---  229 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~-~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---  229 (382)
                            ....|.+. .-...-..+.. +..       .+..+..+...+...+.+||..+++.+..+....|.+.-.   
T Consensus        97 ------~~v~dds~-qsdd~g~~iae~fik-------~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll  162 (970)
T KOG0946|consen   97 ------PEVMDDST-QSDDLGLWIAEQFIK-------NQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALL  162 (970)
T ss_pred             ------hhhcccch-hhhHHHHHHHHHHHc-------CchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHH
Confidence                  01111111 11111111211 111       1456677777888889999999999999999888876432   


Q ss_pred             --HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-H--HHhhhHHHHHhhhcC----cchHHHHHHHHHHHHhccc
Q 016814          230 --DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-W--AMQHITPQVLEMINN----PHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       230 --~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~--~~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~  300 (382)
                        |.-+..++.++.|....||..++-.+..+.+..+.- .  ..+-++..+++.+..    ...-|-+-++..+..+.+.
T Consensus       163 ~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~  242 (970)
T KOG0946|consen  163 VSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKN  242 (970)
T ss_pred             HCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhh
Confidence              444566788899999999999999999998866541 1  123344444444432    2234556666666666554


Q ss_pred             c-Chh-hhh-hhhHHHHHhhc-----cCC----CccHHHHHHHHHHHHhhh-hhH------------HHHHHhHHHHHHH
Q 016814          301 M-GSE-ITC-SRLLPVVINAS-----KDR----VPNIKFNVAKVLQSLIPI-VDQ------------SMVEKTIRPCLVE  355 (382)
Q Consensus       301 ~-~~~-~~~-~~~l~~l~~~l-----~d~----~~~vR~~a~~~l~~i~~~-~~~------------~~~~~~i~~~l~~  355 (382)
                      - +.. .|. ...+|.+.++|     .|.    ...-|...+..+-.+... +.+            -.....++..|..
T Consensus       243 N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~  322 (970)
T KOG0946|consen  243 NISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCT  322 (970)
T ss_pred             CcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHH
Confidence            2 222 232 34566666443     341    223444433333333221 111            1234567777777


Q ss_pred             hcCC--CCccHHhHHHHHHHHHH
Q 016814          356 LTED--PDVDVRFFATQAIQSID  376 (382)
Q Consensus       356 l~~d--~~~~vr~~a~~al~~~~  376 (382)
                      .+-.  -..+|+..+.-+++.+.
T Consensus       323 il~~~~vp~dIltesiitvAevV  345 (970)
T KOG0946|consen  323 ILMHPGVPADILTESIITVAEVV  345 (970)
T ss_pred             HHcCCCCcHhHHHHHHHHHHHHH
Confidence            5433  34567776666555443

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=96.98  E-value=0.21  Score=43.36  Aligned_cols=35  Identities=9%  Similarity=0.173  Sum_probs=22.6

Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc
Q 016814          245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  280 (382)
Q Consensus       245 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~  280 (382)
                      .+.+...+++++.+......+. ..+.+|.+.+.|.
T Consensus       255 e~rkL~lLK~lAEMss~ttaq~-a~q~Lpsi~elLk  289 (460)
T KOG2213|consen  255 EERKLDLLKALAEMSSYTTAQA-ARQMLPSIVELLK  289 (460)
T ss_pred             HHHHHHHHHHHHHhCccchHHH-HHHHHHHHHHHHH
Confidence            4566677788888877664333 3457777776664

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=96.97  E-value=0.04  Score=44.07  Aligned_cols=165  Identities=15%  Similarity=0.163  Sum_probs=94.3

Q ss_pred             hHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcch
Q 016814          207 RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY  284 (382)
Q Consensus       207 ~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~  284 (382)
                      ..-..++..++.+...+|...  ....++..+.++-.+++...|+.+-.+++..++.+|++.+.+ ++|.-.+. .++..
T Consensus        15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~-~lPLnl~~-~~~~~   92 (198)
T PF08161_consen   15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLS-ILPLNLDN-ADDSQ   92 (198)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHH-HCCCCccC-CCcCC
Confidence            344556666666666666532  223445555666677778899999999999999999987665 55533222 22223


Q ss_pred             HHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc------CCCccHHHHHHHHH-HHHhhhhh-----H----HHHHHh
Q 016814          285 LYRMTILRAISLLAPVMGSEITCSRLLPVVINASK------DRVPNIKFNVAKVL-QSLIPIVD-----Q----SMVEKT  348 (382)
Q Consensus       285 ~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~------d~~~~vR~~a~~~l-~~i~~~~~-----~----~~~~~~  348 (382)
                      .-|.-.+-.+..-..+..-.+|.++++|..-.+-+      .....+.....+++ .++..-+.     +    +.| ..
T Consensus        93 ~~raWLLPlLr~~i~~~~L~fF~~~~lPla~~~~~~~~~~~~~~~~~~ak~~~~l~~QlWslLP~FC~~P~D~~~~F-~~  171 (198)
T PF08161_consen   93 PGRAWLLPLLRDHIRNASLSFFVEEFLPLARRLRQKAQKASEAGKSVEAKIYETLVQQLWSLLPGFCNYPTDLAESF-PS  171 (198)
T ss_pred             cccchhHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHhHHhcCCcccHHHHH-HH
Confidence            33444444444444444555788888886544321      12222333333332 22222111     1    223 56


Q ss_pred             HHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          349 IRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       349 i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      +-+.|.+.+.| .+++|...++|+..+
T Consensus       172 ~a~~L~~~L~~-~~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  172 FAKLLGNALYD-QPDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHhc-CcchHHHHHHHHHHH
Confidence            66667777776 488999999998875

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.42  Score=46.58  Aligned_cols=93  Identities=17%  Similarity=0.189  Sum_probs=71.8

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH-
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-  342 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~-  342 (382)
                      .+++.....++++++-.+|..++.++..-...+...     +......|.+...+.+.++-+-..|++++..++...|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            456667778899999999999999987755544321     34556677788889999999999999999999887763 


Q ss_pred             --HHHHHhHHHHHHHhcCCCC
Q 016814          343 --SMVEKTIRPCLVELTEDPD  361 (382)
Q Consensus       343 --~~~~~~i~~~l~~l~~d~~  361 (382)
                        ..+.+.++|.+.+++.|..
T Consensus       882 v~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              3456788899998776644

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=96.93  E-value=0.33  Score=44.92  Aligned_cols=266  Identities=14%  Similarity=0.082  Sum_probs=130.2

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCC
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDN   87 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~   87 (382)
                      -..|..|++-+......++. .....+......++..+ ..+.|.++.+.+...++.-..  ...+..+...+..--.++
T Consensus         4 l~~R~~a~~~l~~~i~~~~~-~~i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~~   82 (464)
T PF11864_consen    4 LSERIKAAEELCESIQKYPL-SSIEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSNDD   82 (464)
T ss_pred             HHHHHHHHHHHHHHHHhCCc-hHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCch
Confidence            35688899888888887765 33455666667777644 567999999999999876554  122223444443333444


Q ss_pred             cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCc---------------------------hHHHHHHHHHHHh
Q 016814           88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS---------------------------QHVRSALASVIMG  140 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~---------------------------~~vr~~a~~~l~~  140 (382)
                      +-.-|-.++.+|..=++.+..  +...+.|.+...+....                           ...-...+..+..
T Consensus        83 d~~~~l~aL~~LT~~Grdi~~--~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~n  160 (464)
T PF11864_consen   83 DFDLRLEALIALTDNGRDIDF--FEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLVN  160 (464)
T ss_pred             hHHHHHHHHHHHHcCCcCchh--cccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHHH
Confidence            555676676666654444322  22334444443332111                           1111122222222


Q ss_pred             hcccc---ChHhHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhh--hchhhHhhhHHHHHHHHhcCCCchHHHHHHH
Q 016814          141 MAPLL---GKDATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQV--IGIDLLSQSLLPAIVELAEDRHWRVRLAIIE  214 (382)
Q Consensus       141 l~~~~---~~~~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~--~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~  214 (382)
                      +.+.-   -.+.....++..+..+++. .++..-..+++.+..+..+  ++.+.+ ..++..|....+..  .....+-+
T Consensus       161 viKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl-~~~i~vLCsi~~~~--~l~~~~w~  237 (464)
T PF11864_consen  161 VIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL-SPCIEVLCSIVNSV--SLCKPSWR  237 (464)
T ss_pred             HHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH-HHHHHHHhhHhccc--ccchhHHH
Confidence            22211   1223345555656666544 3344446777777776553  444444 44555555443322  22333444


Q ss_pred             HhHHHHh-hhchhhhHHHHHHHH--HHHhccchhHHHHHHHHHHHHHHHHhChHHH----H--hhhHHHHHhhhcCcc
Q 016814          215 YIPLLAS-QLGVGFFDDKLGALC--MQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----M--QHITPQVLEMINNPH  283 (382)
Q Consensus       215 ~l~~l~~-~~~~~~~~~~l~~~l--~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----~--~~l~~~l~~~l~~~~  283 (382)
                      .+..+++ +.|...+ ..+..++  ...-..++..+-.+|+..++.+.-..|.+.+    .  ..++|.+...++.++
T Consensus       238 ~m~nL~~S~~g~~~i-~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~  314 (464)
T PF11864_consen  238 TMRNLLKSHLGHSAI-RTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNS  314 (464)
T ss_pred             HHHHHHcCccHHHHH-HHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCC
Confidence            4554443 2222221 1222222  0011123445555777777776654432211    1  125555555555443

>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised

Probab=96.93  E-value=0.06  Score=47.58  Aligned_cols=221  Identities=14%  Similarity=0.069  Sum_probs=117.9

Q ss_pred             HHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHH
Q 016814           53 RYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVR  131 (382)
Q Consensus        53 R~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr  131 (382)
                      |...++.|..+..    ......++..+..++. +.+.....+.+.++..-...++. ...+.++..+.+.++|+.+.+|
T Consensus         4 r~~~~~~L~~l~~----~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~-~~~~~~~~~~~kGl~~kk~~vR   78 (339)
T PF12074_consen    4 RVLHASMLSSLPS----SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSS-ELPKKVVDAFKKGLKDKKPPVR   78 (339)
T ss_pred             HHHHHHHHHhCCC----cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCc-CCCHHHHHHHHHHhcCCCCcHH
Confidence            4455555554432    2234456666666554 45677888888888887766622 2234677889999999999999


Q ss_pred             HHHHHHHHhhccccC---hHhHHHhhHHHHHHh----hcCCChHHHHHHHHhhHHhhh--hhchhhHh------------
Q 016814          132 SALASVIMGMAPLLG---KDATIEQLLPIFLSL----LKDEFPDVRLNIISKLDQVNQ--VIGIDLLS------------  190 (382)
Q Consensus       132 ~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~----l~d~~~~vr~~~~~~l~~~~~--~~~~~~~~------------  190 (382)
                      ...+..++......+   .......++|.+.+.    ...+.+......+.+...+..  ....+...            
T Consensus        79 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~  158 (339)
T PF12074_consen   79 RAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALD  158 (339)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccC
Confidence            999999998765111   111223444444444    444433322111111111111  00000000            


Q ss_pred             --hh--HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh---HHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHH
Q 016814          191 --QS--LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF---DDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       191 --~~--llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~  261 (382)
                        +.  +-+.+..-+  .+...-..+++.+..+.........   ...+-..+..++.++  .++||..|.+.+..+...
T Consensus       159 ~kps~ll~~kvyskl--~~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~  236 (339)
T PF12074_consen  159 PKPSFLLSEKVYSKL--ASEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYAS  236 (339)
T ss_pred             CCcchhcCHHHHhcc--CCHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh
Confidence              00  001111110  1222233444455444443322111   234666677777777  899999999999998876


Q ss_pred             hChHHHHhhhHHHHHhhhcC
Q 016814          262 FGPEWAMQHITPQVLEMINN  281 (382)
Q Consensus       262 ~~~~~~~~~l~~~l~~~l~~  281 (382)
                      .+.. +...++..+.+.+.+
T Consensus       237 ~~~~-l~~~li~~l~~~l~~  255 (339)
T PF12074_consen  237 NPEL-LSKSLISGLWKWLSS  255 (339)
T ss_pred             ChHH-HHHHHHHHHHHHHHh
Confidence            5443 555566666666643

This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.

>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter

Probab=96.88  E-value=0.031  Score=43.56  Aligned_cols=112  Identities=17%  Similarity=0.201  Sum_probs=84.7

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHH---hhhhhH
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL---IPIVDQ  342 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i---~~~~~~  342 (382)
                      ..++|.+.+.+.......|-.|...+..+.+..+.+   ++..++++.+...|+..+++|..+++++|..+   ...+|+
T Consensus        37 ~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~  116 (183)
T PF10274_consen   37 HHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE  116 (183)
T ss_pred             hhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence            468999999999888888888999999988773333   56788888999999999999999999999999   666776


Q ss_pred             H--HHHHhHHHHHHHhcCC-----------CCccHHhHHHHHHHHHHHHhc
Q 016814          343 S--MVEKTIRPCLVELTED-----------PDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       343 ~--~~~~~i~~~l~~l~~d-----------~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .  .+..+++|.+.-+.+.           ...+++.....++..+-..=|
T Consensus       117 aLvPyyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG  167 (183)
T PF10274_consen  117 ALVPYYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGG  167 (183)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcC
Confidence            5  3567888888743322           335566666666665544433

The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=96.85  E-value=0.31  Score=44.53  Aligned_cols=79  Identities=19%  Similarity=0.147  Sum_probs=55.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH---HHhhhHhhhhhc
Q 016814           47 DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA---IQHILPCVKELS  123 (382)
Q Consensus        47 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~---~~~il~~l~~~~  123 (382)
                      |.-.+.|..++++||.++.+++........-+.+...+++++..=|..+.-.+..++........   ...+.+.+.+.+
T Consensus        98 d~v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L  177 (441)
T PF12054_consen   98 DVVIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEIL  177 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHH
Confidence            34467899999999999998866554333334688888988888888888888888876643311   134556666666


Q ss_pred             CC
Q 016814          124 SD  125 (382)
Q Consensus       124 ~d  125 (382)
                      .+
T Consensus       178 ~~  179 (441)
T PF12054_consen  178 EN  179 (441)
T ss_pred             cC
Confidence            53

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=96.85  E-value=0.018  Score=49.24  Aligned_cols=135  Identities=21%  Similarity=0.236  Sum_probs=84.9

Q ss_pred             hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cc-----cchHHHHHHhcC--------CCcHHHHHH
Q 016814           31 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TR-----MDLVPAYVRLLR--------DNEAEVRIA   94 (382)
Q Consensus        31 ~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~-----~~ll~~l~~~l~--------d~~~~VR~~   94 (382)
                      +..++.++|.+..++.|.++.+|..+++++..+.+.++...   ..     +.+.+.+..++.        +++..+-..
T Consensus       114 ~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~  193 (282)
T PF10521_consen  114 SQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQA  193 (282)
T ss_pred             HHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHH
Confidence            45678899999999999999999999999999998777654   22     224445555555        666778888


Q ss_pred             HHHHHHHHHHhhCH-------H----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHh
Q 016814           95 AAGKVTKFCRILNP-------E----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSL  161 (382)
Q Consensus        95 a~~~l~~l~~~~~~-------~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~  161 (382)
                      +..++..++.....       .    .+.+.++..+....+-+.+.++...++.+..+...+|-..  ..+.++|.+.+.
T Consensus       194 ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~  273 (282)
T PF10521_consen  194 AYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQI  273 (282)
T ss_pred             HHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            88888887664311       0    1111122222222222346666677777666666666433  235666666665


Q ss_pred             hcCC
Q 016814          162 LKDE  165 (382)
Q Consensus       162 l~d~  165 (382)
                      +.++
T Consensus       274 l~np  277 (282)
T PF10521_consen  274 LENP  277 (282)
T ss_pred             hcCC
Confidence            5553

>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]

Probab=96.85  E-value=0.45  Score=45.09  Aligned_cols=339  Identities=11%  Similarity=0.022  Sum_probs=182.7

Q ss_pred             HHHHHHHHHHhccChhhhhhhhhhhhhhhc-----cC---CCHHHHHHHHHHHHHHHHHhCCcc-----cccchHHHHHH
Q 016814           16 LAVEGCAALGKLLEPQDCVAHILPVIVNFS-----QD---KSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVR   82 (382)
Q Consensus        16 ~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-----~d---~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~ll~~l~~   82 (382)
                      +|+.++...+. -.++...+.+++++...+     .+   ++.+-.+.+.+.++.+...++..-     ....+++.++.
T Consensus       389 aal~fl~~~~s-Krke~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P  467 (970)
T COG5656         389 AALFFLIISKS-KRKEETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIP  467 (970)
T ss_pred             HHHHHHHHHhc-ccchhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhH
Confidence            34444444333 334444555666665544     22   345667788899888887554421     12236777777


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh-HHHhhHHHHHHh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSL  161 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~-~~~~l~~~l~~~  161 (382)
                      .++++..-.|..+++.+..+-..+....+...+......++++.+-.|+..|+-++.-+........ ....+.+.+.++
T Consensus       468 ~f~s~ygfL~Srace~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekL  547 (970)
T COG5656         468 AFRSNYGFLKSRACEFISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKL  547 (970)
T ss_pred             hhcCcccchHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHH
Confidence            8899999999999999999977777666666677777788888888899999999888765433222 223333444444


Q ss_pred             ---hcCCChHHHHHHHHhh-HHhhhhhc---hhhH---hhhHHHHHHHHhcCC---Cc---hHHHHHHHHhHH---HHhh
Q 016814          162 ---LKDEFPDVRLNIISKL-DQVNQVIG---IDLL---SQSLLPAIVELAEDR---HW---RVRLAIIEYIPL---LASQ  222 (382)
Q Consensus       162 ---l~d~~~~vr~~~~~~l-~~~~~~~~---~~~~---~~~llp~l~~~~~d~---~~---~vr~~~~~~l~~---l~~~  222 (382)
                         .++-+-++-..+.+.+ +.+.+.+.   ++..   .++++.....++..+   +.   +-..++...+..   +.-.
T Consensus       548 LsLSn~feiD~LS~vMe~fVe~fseELspfa~eLa~~Lv~qFlkiaq~l~ens~d~~s~vDDKqmaasGiL~T~~smiLS  627 (970)
T COG5656         548 LSLSNTFEIDPLSMVMESFVEYFSEELSPFAPELAGSLVRQFLKIAQSLLENSSDTSSVVDDKQMAASGILRTIESMILS  627 (970)
T ss_pred             HHhcccccchHHHHHHHHHHHHhHHhhchhHHHHHHHHHHHHHHHHHHHHcCCccccccccHHHHHHHHHHHHHHHHHHh
Confidence               3443333333333333 22222222   2211   122233333333222   11   122233333333   3322


Q ss_pred             hchh--h---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcch-HHHHHHHHHHH
Q 016814          223 LGVG--F---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPHY-LYRMTILRAIS  295 (382)
Q Consensus       223 ~~~~--~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~  295 (382)
                      +...  .   ....+.|.+.-.+++....+-..|+..+....-.... +...-.+...+.+.+.++.. ..-+.+..++.
T Consensus       628 len~p~vLk~le~slypvi~Filkn~i~dfy~Ea~dildg~tf~skeI~pimwgi~Ell~~~l~~~~t~~y~ee~~~al~  707 (970)
T COG5656         628 LENRPLVLKYLEVSLYPVISFILKNEISDFYQEALDILDGYTFMSKEIEPIMWGIFELLLNLLIDEITAVYSEEVADALD  707 (970)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhhhHHHHHhhhhhhHHHHHHHhcccccchhhhHHHHHHHHH
Confidence            3221  1   2345677777677776667777777666555432211 01111233333344445442 34455666777


Q ss_pred             HhccccChh-----hhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814          296 LLAPVMGSE-----ITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  356 (382)
Q Consensus       296 ~l~~~~~~~-----~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  356 (382)
                      .+...-+.+     .+...+.......+..+.-  +=+..+++.+..+.-.++.+. .++.+|.+.+.
T Consensus       708 nfityG~~ef~~~~~y~~i~~eI~~~~l~sE~n~l~D~~~vc~i~e~l~Ln~rd~L-l~qy~plfi~v  774 (970)
T COG5656         708 NFITYGKTEFMDAGIYGSICSEISKLCLCSEENFLEDFIGVCRIIESLILNIRDEL-LSQYLPLFISV  774 (970)
T ss_pred             HHHHhCccccccccchhHHHHHHHHHHHcchhhhHHHHHHHHHHHHHHHHHccchh-HHhhhHHHHHH
Confidence            766433322     2333444555566665544  457788888888888777642 33345555443

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=96.77  E-value=0.069  Score=43.65  Aligned_cols=133  Identities=15%  Similarity=0.132  Sum_probs=83.3

Q ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHH-HHHHHHHHHhhCHHHHHH
Q 016814           36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAA-AGKVTKFCRILNPELAIQ  113 (382)
Q Consensus        36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a-~~~l~~l~~~~~~~~~~~  113 (382)
                      ....++.++.++...+.|..++..+.......+     ...++.+...+.+ ++|.+-... ...++.+....      +
T Consensus        51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~  119 (213)
T PF08713_consen   51 ELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P  119 (213)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence            444556667777777888888877765432211     1245556655554 356655444 34444443211      3


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      ...+.+.+.++|+++.+|..++..+......    ...+.++..+...+.|++..||.++..+|..++..
T Consensus       120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            5667788888888888888887665444432    23467777778888888888888888888877654

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=96.72  E-value=0.36  Score=42.99  Aligned_cols=213  Identities=16%  Similarity=0.089  Sum_probs=119.9

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccCh-hhhhhh-hhhh-hhhhccC-CCHHHHHHHHHHHHHHHHHh-CCcccccchHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEP-QDCVAH-ILPV-IVNFSQD-KSWRVRYMVANQLYELCEAV-GPEPTRMDLVPA   79 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~-ll~~-l~~~~~d-~~~~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~   79 (382)
                      ++.|+ ..||.++.+.+..+...... ....+. +--+ +..+..| ++..-|..|.+.+..+.+.- +.+.....++..
T Consensus        34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvra  112 (371)
T PF14664_consen   34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRA  112 (371)
T ss_pred             HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHH
Confidence            45555 99999999999877664321 111111 1111 2233344 45677999999999998763 234444568888


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh------HhHHHh
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK------DATIEQ  153 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~------~~~~~~  153 (382)
                      ++....+++...|..|++++..++-.-+.=.....-+..+.+.+.|....+-...+.++-.+...-..      +...+.
T Consensus       113 lvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~  192 (371)
T PF14664_consen  113 LVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLES  192 (371)
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHH
Confidence            88888999999999999999988765444333344456666666665555666666666655533221      112244


Q ss_pred             hHHHHHHh----hcCCCh-HHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          154 LLPIFLSL----LKDEFP-DVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       154 l~~~l~~~----l~d~~~-~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      ++..+.+.    .++... +.-..+..++..+.+.++-      +.+  .-+..+...+.-++..+|..++..+-.+.
T Consensus       193 l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ildll~dll  268 (371)
T PF14664_consen  193 LLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILDLLFDLL  268 (371)
T ss_pred             HHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            44444443    222221 2334445555555444321      111  23334444445555555555555554443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.69  E-value=0.28  Score=40.66  Aligned_cols=194  Identities=14%  Similarity=0.096  Sum_probs=107.2

Q ss_pred             hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHH--
Q 016814          122 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE--  199 (382)
Q Consensus       122 ~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~--  199 (382)
                      +-+..++.+.....+++..++.+-.  .....++..+..+.+......+..+...+..+.+.-+ ..+ ..+-+.+..  
T Consensus         9 l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~-r~f-~~L~~~L~~~~   84 (234)
T PF12530_consen    9 LGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAND-RHF-PFLQPLLLLLI   84 (234)
T ss_pred             hcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCc-hHH-HHHHHHHHHHH
Confidence            5556666666777777766665431  2234455555555555555554444444444433211 111 222222222  


Q ss_pred             -------HhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814          200 -------LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHI  271 (382)
Q Consensus       200 -------~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  271 (382)
                             .-++..|+...+.+..+..++...+.  -...+++.+...+ ++.+..++..+++.+..+++.--.+. .+ .
T Consensus        85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~-~s-~  160 (234)
T PF12530_consen   85 LRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDF-YS-A  160 (234)
T ss_pred             hhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccH-HH-H
Confidence                   01345677777777788888776555  3457888888888 78888899999999999985422221 11 2


Q ss_pred             HHHHHhhhcC-cchHHHHHHHHHHHHhccc-cC---hhhhhhhhHHHHHhhccCCCc
Q 016814          272 TPQVLEMINN-PHYLYRMTILRAISLLAPV-MG---SEITCSRLLPVVINASKDRVP  323 (382)
Q Consensus       272 ~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~-~~---~~~~~~~~l~~l~~~l~d~~~  323 (382)
                      ...+...++. ..+.+-...+..+..+... ..   .+.+...++..+.++..+...
T Consensus       161 w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~  217 (234)
T PF12530_consen  161 WKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV  217 (234)
T ss_pred             HHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence            2233333332 3344544444544443322 11   123566778888888776664

>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.68  E-value=0.71  Score=45.97  Aligned_cols=243  Identities=16%  Similarity=0.080  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHHHHhCC-cccc-c----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814           51 RVRYMVANQLYELCEAVGP-EPTR-M----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK  120 (382)
Q Consensus        51 ~vR~~a~~~l~~l~~~~~~-~~~~-~----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~  120 (382)
                      .+|...+..++.+...++. .... .    .++..+..+...+-..+|..|.-+...+...+-.....    ...-..-.
T Consensus       170 ~fr~~~~~fl~~lV~q~q~~s~l~d~~lmd~~is~LtamSdSqvR~fRhTaTl~~mklmt~Lv~va~~Ls~~~~~tskQl  249 (1048)
T KOG2011|consen  170 NFRENFCEFLPTLVSQCQYGSCLFDSFLMDDLISWLTAMSDSQVRAFRHTATLAAMKLMTALVSVALNLSSHNDKTSKQL  249 (1048)
T ss_pred             HHHHHHHHHHHHHHHHhccCCccccchhHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4677788888888776665 2222 2    24444444434444557888776666554432111000    00000000


Q ss_pred             hhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHH-----hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814          121 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLS-----LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  195 (382)
Q Consensus       121 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~-----~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp  195 (382)
                      ++-...+..-|...-..+......-+.....+.++..+.+     .-.|-.+.+|..+++.++.-+..++.-.+...++.
T Consensus       250 eaEr~k~r~~rarle~Ll~~r~etqe~~d~i~~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLK  329 (1048)
T KOG2011|consen  250 EAERNKSRGNRARLESLLMLRKETQEQQDEIESMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLK  329 (1048)
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHH
Confidence            0111111112221111111111111111122333333332     23788999999999999998888877666677888


Q ss_pred             HHHHHhcCCCchHHHHHHHHhHHHHhhh---c-hhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814          196 AIVELAEDRHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQH  270 (382)
Q Consensus       196 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  270 (382)
                      .+--.+.|.+-.||..++..|..+...-   + -+.|...+-..+..+. .|-+..||...+..+-.....   ..+...
T Consensus       330 YiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~---g~L~d~  406 (1048)
T KOG2011|consen  330 YIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSS---GLLSDK  406 (1048)
T ss_pred             HhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcc---cccChh
Confidence            8888889999999999999999988762   1 2333344444455554 666777887776655444221   111111


Q ss_pred             hHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814          271 ITPQVLEMINNPHYLYRMTILRAISL  296 (382)
Q Consensus       271 l~~~l~~~l~~~~~~~r~~a~~~l~~  296 (382)
                      =+-.+..++-|.+.+++.+|...+..
T Consensus       407 di~~Vy~Li~d~~r~~~~aa~~fl~~  432 (1048)
T KOG2011|consen  407 DILIVYSLIYDSNRRVAVAAGEFLYK  432 (1048)
T ss_pred             HHHHHHHHHhccCcchHHHHHHHHHH
Confidence            22234455567777777776655543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=96.66  E-value=0.027  Score=43.46  Aligned_cols=146  Identities=13%  Similarity=0.101  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhccc-cChhh
Q 016814          229 DDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPV-MGSEI  305 (382)
Q Consensus       229 ~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~-~~~~~  305 (382)
                      .+.+++.+...++. .++.+|..+++.+|.+.. +.+-.+.. +....... -.+.+........   ...... ...+.
T Consensus         8 yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilGA-LDP~~~k~-~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~ee~   82 (160)
T PF11865_consen    8 YPELLDILLNILKTEQSQSIRREALRVLGILGA-LDPYKHKS-IQKSLDSKSSENSNDESTDISL---PMMGISPSSEEY   82 (160)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-cCcHHHhc-ccccCCccccccccccchhhHH---hhccCCCchHHH
Confidence            46788999888874 469999999999998764 33221110 00000000 0111111111111   111111 23445


Q ss_pred             hhhhhHHHHHhhccCCCcc-HHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814          306 TCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                      +-..++..+.+.++|+.-. -...+++++..+.+..|..  .+..+++|.+.......+...|....+-++.+....
T Consensus        83 y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~iv  159 (160)
T PF11865_consen   83 YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVSIV  159 (160)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            6667788899999998643 5567888888888766643  577899999999888767789998888888887654

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]

Probab=96.62  E-value=0.037  Score=54.94  Aligned_cols=167  Identities=13%  Similarity=0.103  Sum_probs=106.9

Q ss_pred             HHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhcc---chhHHHHHHHHHHHHHHHH---hChHHH--HhhhHHHHHhh
Q 016814          209 RLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQD---KVYSIRDAAANNLKRLAEE---FGPEWA--MQHITPQVLEM  278 (382)
Q Consensus       209 r~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d---~~~~vr~~a~~~l~~~~~~---~~~~~~--~~~l~~~l~~~  278 (382)
                      |+.+-..|..+++.+|...+.  +.+-..+...+.+   .+.    ..+..+..+-..   +| ..+  .-..+|.+..+
T Consensus       750 rrgael~L~~l~~~fg~sl~~klp~l~~~L~~~L~~~~~~~d----~~~~s~~vf~s~~~~m~-s~l~~~~~~l~~l~~~  824 (1549)
T KOG0392|consen  750 RRGAELFLKILSKMFGGSLAAKLPHLWDFLLKALSGLIDGND----EFLSSFEVFNSLAPLMH-SFLHPLGSLLPRLFFF  824 (1549)
T ss_pred             hhhHHHHHHHHHHHhhHHHHHhcchHHHHHHHhhhccCCCCc----chhhhHHHHHHHHHhhh-hhhhhhhhhhhHHHHh
Confidence            666667788888888876654  2333333333321   111    112222222111   11 111  22567788888


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHH-HHHHHhhhhh--HHHHHHhHHHHHHH
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK-VLQSLIPIVD--QSMVEKTIRPCLVE  355 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~-~l~~i~~~~~--~~~~~~~i~~~l~~  355 (382)
                      ..+.+..+|.+++.+++.+.+....+ ....++..++..+++...-+|...+. .+..+.....  -..+...+.|.+..
T Consensus       825 ~~s~~~a~r~~~ar~i~~~~k~~~~e-~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr  903 (1549)
T KOG0392|consen  825 VRSIHIAVRYAAARCIGTMFKSATRE-TMATVINGFLPLLGDLDKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLR  903 (1549)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhccchhhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhc
Confidence            88999999999999999987654444 45566667777777766656655554 4444433322  22456778888999


Q ss_pred             hcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          356 LTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       356 l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +..|....||.+|.+++..+.++++.
T Consensus       904 ~msd~~d~vR~aat~~fa~lip~~~l  929 (1549)
T KOG0392|consen  904 RMSDQIDSVREAATKVFAKLIPLLPL  929 (1549)
T ss_pred             ccccchHHHHHHHHHHHHHHhccccc
Confidence            99999999999999999999988763

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.54  E-value=0.48  Score=41.37  Aligned_cols=210  Identities=17%  Similarity=0.197  Sum_probs=112.3

Q ss_pred             ChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814          146 GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  225 (382)
Q Consensus       146 ~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  225 (382)
                      .++....+++..+.+++.+...  +...   +..+...-.   . ..+-|.+. ++..+++.+...++..+..++...+.
T Consensus        69 ~~~d~v~yvL~li~dll~~~~~--~~~~---~~~~~~~~~---~-~~~~~fl~-ll~~~D~~i~~~a~~iLt~Ll~~~~~  138 (312)
T PF03224_consen   69 SNDDTVQYVLTLIDDLLSDDPS--RVEL---FLELAKQDD---S-DPYSPFLK-LLDRNDSFIQLKAAFILTSLLSQGPK  138 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-SSS--SHHH---HHHHHH-TT---H---HHHHHH-H-S-SSHHHHHHHHHHHHHHHTSTTT
T ss_pred             CcHHHHHHHHHHHHHHHhcCHH--HHHH---HHHhccccc---c-hhHHHHHH-HhcCCCHHHHHHHHHHHHHHHHcCCc
Confidence            3445566777777777666431  1111   111111111   0 12334444 77788999999999999998876544


Q ss_pred             hhhH--HHHHHHHHHHhc----cchhHHHHHHHHHHHHHHHHhC--hHHHHhhhHHHHHhhh------c-CcchHHHHHH
Q 016814          226 GFFD--DKLGALCMQWLQ----DKVYSIRDAAANNLKRLAEEFG--PEWAMQHITPQVLEMI------N-NPHYLYRMTI  290 (382)
Q Consensus       226 ~~~~--~~l~~~l~~~l~----d~~~~vr~~a~~~l~~~~~~~~--~~~~~~~l~~~l~~~l------~-~~~~~~r~~a  290 (382)
                      ....  ..+++.+.++++    .++.+++..++.+++.+...-.  .-++....++.+...+      . ..+.+....+
T Consensus       139 ~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~  218 (312)
T PF03224_consen  139 RSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQA  218 (312)
T ss_dssp             --HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHH
Confidence            3322  245555555554    4566778888999998875311  1223345666666666      2 2235667777


Q ss_pred             HHHHHHhcccc--ChhhhhhhhHHHHHhhccCCCcc-HHHHHHHHHHHHhhhhh----HHHHHHhHHHHHHHhcCC--CC
Q 016814          291 LRAISLLAPVM--GSEITCSRLLPVVINASKDRVPN-IKFNVAKVLQSLIPIVD----QSMVEKTIRPCLVELTED--PD  361 (382)
Q Consensus       291 ~~~l~~l~~~~--~~~~~~~~~l~~l~~~l~d~~~~-vR~~a~~~l~~i~~~~~----~~~~~~~i~~~l~~l~~d--~~  361 (382)
                      +.++..++-.-  -.......++|.+...+++...+ |-..++.++..+...-.    +......+++.+..+...  .|
T Consensus       219 ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~D  298 (312)
T PF03224_consen  219 LLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSD  298 (312)
T ss_dssp             HHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SS
T ss_pred             HHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCC
Confidence            77777765221  11223345889888888765543 55556666666665433    234556777777777654  45


Q ss_pred             ccHH
Q 016814          362 VDVR  365 (382)
Q Consensus       362 ~~vr  365 (382)
                      +++.
T Consensus       299 edl~  302 (312)
T PF03224_consen  299 EDLT  302 (312)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.84  Score=43.68  Aligned_cols=170  Identities=18%  Similarity=0.223  Sum_probs=107.5

Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhh--ch
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVI--GI  186 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~--~~  186 (382)
                      ...+.++|-+. --.+..-..|+..+..+++....--+......+...+.+++.|. +..||.+++.++..+.+..  .+
T Consensus       484 Wl~~~llpEl~-~~~~~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~  562 (978)
T KOG1993|consen  484 WLQEALLPELA-NDHGNSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSE  562 (978)
T ss_pred             HHHHhhCHHhh-hcccchhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCCh
Confidence            45566777666 22233456889999999998875444555677788888999997 6788999999998887654  34


Q ss_pred             hhHhhhHHHHH----HHHhc-CCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhc--cchhHHHHHHHHHHHH
Q 016814          187 DLLSQSLLPAI----VELAE-DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQ--DKVYSIRDAAANNLKR  257 (382)
Q Consensus       187 ~~~~~~llp~l----~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~--d~~~~vr~~a~~~l~~  257 (382)
                      +.| ..++|.+    .+++. -..-+.|..++..++.+....++..  +..+++..+-.+..  ...+-.|-+.+..+..
T Consensus       563 dsF-lp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~~e~lLr~alL~~L~~  641 (978)
T KOG1993|consen  563 DSF-LPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESEEEPLLRCALLATLRN  641 (978)
T ss_pred             hhh-hhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            444 2222332    22322 2334567888888888887776543  23344444444333  2345578888899999


Q ss_pred             HHHHhChHH--HHhhhHHHHHhhhcCc
Q 016814          258 LAEEFGPEW--AMQHITPQVLEMINNP  282 (382)
Q Consensus       258 ~~~~~~~~~--~~~~l~~~l~~~l~~~  282 (382)
                      ++..+|.+.  +..-++| +++.-.|+
T Consensus       642 lV~alg~qS~~~~~fL~p-VIel~~D~  667 (978)
T KOG1993|consen  642 LVNALGAQSFEFYPFLYP-VIELSTDP  667 (978)
T ss_pred             HHHHhccCCccchHHHHH-HHHHhcCC
Confidence            999998753  3333343 44554554

>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex

Probab=96.48  E-value=0.064  Score=47.23  Aligned_cols=137  Identities=13%  Similarity=0.163  Sum_probs=84.4

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccc-------hhHHHHHHHHHHHHHHHH--hCh
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK-------VYSIRDAAANNLKRLAEE--FGP  264 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~-------~~~vr~~a~~~l~~~~~~--~~~  264 (382)
                      ...+.+.+.+.+...|..++..+..-.   |    ..+++|.+..++.+.       +...-...++.+..+..+  +.-
T Consensus       180 f~~It~a~~~~~~~~r~~aL~sL~tD~---g----l~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~l  252 (343)
T cd08050         180 FEEITEALVGSNEEKRREALQSLRTDP---G----LQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHL  252 (343)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhccCC---C----chhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCch
Confidence            344444555566666777666654422   2    245666666655443       333333444444444432  223


Q ss_pred             HHHHhhhHHHHHhhh----------cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCcc--HHHHHH
Q 016814          265 EWAMQHITPQVLEMI----------NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPN--IKFNVA  330 (382)
Q Consensus       265 ~~~~~~l~~~l~~~l----------~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~--vR~~a~  330 (382)
                      +.+...++|.++.++          .+.+|..|..|+..+..+++.++..  .....++..+.+.+.|+...  ....|+
T Consensus       253 e~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi  332 (343)
T cd08050         253 EPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAI  332 (343)
T ss_pred             HHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHH
Confidence            567777888888765          2356999999999999999888865  35566666777777766433  467777


Q ss_pred             HHHHHHh
Q 016814          331 KVLQSLI  337 (382)
Q Consensus       331 ~~l~~i~  337 (382)
                      ..|..++
T Consensus       333 ~GL~~lG  339 (343)
T cd08050         333 VGLSALG  339 (343)
T ss_pred             HHHHHhC
Confidence            7777664

The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.40  E-value=0.26  Score=44.97  Aligned_cols=126  Identities=13%  Similarity=0.243  Sum_probs=74.6

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC--CcH
Q 016814           12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEA   89 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d--~~~   89 (382)
                      .-|....+.+...+...|.+...+.+...+.+  ..++|+.-++++..+..++..+..+.  +.++|.+++.+.+  ...
T Consensus       367 ~fR~~v~dvl~Dv~~iigs~e~lk~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~e--~~i~pevl~~i~nlp~Q~  442 (559)
T KOG2081|consen  367 EFRLKVGDVLKDVAFIIGSDECLKQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPEE--NTIMPEVLKLICNLPEQA  442 (559)
T ss_pred             HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCccc--cchHHHHHHHHhCCccch
Confidence            45667777777777777666555555544444  56677777777777777777666543  3456666554433  224


Q ss_pred             HHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814           90 EVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAP  143 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~  143 (382)
                      .+|.+++..+|.+.+..... ...+-++..+...+++..  ....++.++..++.
T Consensus       443 ~~~~ts~ll~g~~~ew~~~~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~  495 (559)
T KOG2081|consen  443 PLRYTSILLLGEYSEWVEQHPELLEPVLRYIRQGLQLKR--LASAAALAFHRICS  495 (559)
T ss_pred             hHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHH
Confidence            47777777777777765443 222333344444444444  44555555555554

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=96.40  E-value=0.95  Score=43.21  Aligned_cols=335  Identities=17%  Similarity=0.179  Sum_probs=181.8

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc-----chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E  109 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-----~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~  109 (382)
                      =+|-...++...++.+...+.-.+.-++  ++.+..+.     .=+|.++.++.+.+.+|+..|+.+|.++.-.-..  +
T Consensus       234 ~lpe~i~mL~~q~~~~qsnaaaylQHlc--fgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~N  311 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPSVQSNAAAYLQHLC--FGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSN  311 (717)
T ss_pred             ccHHHHHHHhccChhhhHHHHHHHHHHH--hhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCccc
Confidence            3455666777778888888888887777  34433222     2488999999999999999999999998543221  1


Q ss_pred             --HH-HHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccc--cChHhHHHhhHHHHHHhh-------cCC-------ChHH
Q 016814          110 --LA-IQHILPCVKELSSD-SSQHVRSALASVIMGMAPL--LGKDATIEQLLPIFLSLL-------KDE-------FPDV  169 (382)
Q Consensus       110 --~~-~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~--~~~~~~~~~l~~~l~~~l-------~d~-------~~~v  169 (382)
                        .+ ...=+|.+.+++.. .+.+||+.+...+-.+...  +... ....-++.+...+       .++       ...|
T Consensus       312 Klai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~-ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~~~v  390 (717)
T KOG1048|consen  312 KLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKML-IITSALSTLTDNVIIPHSGWEEEPAPRKAEDSTV  390 (717)
T ss_pred             chhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHH-HHHHHHHHHHHhhcccccccCCCCccccccccee
Confidence              11 11223555555543 5567888888777777654  1111 1112222222211       111       1223


Q ss_pred             HHHHHHhhHHhhhhhch--------hhHhhhHHHHHHHHhcC---CCchH--HHHHHHHhHHHHh---------------
Q 016814          170 RLNIISKLDQVNQVIGI--------DLLSQSLLPAIVELAED---RHWRV--RLAIIEYIPLLAS---------------  221 (382)
Q Consensus       170 r~~~~~~l~~~~~~~~~--------~~~~~~llp~l~~~~~d---~~~~v--r~~~~~~l~~l~~---------------  221 (382)
                      -.++.-+|..+...-..        +..++.++-.+..+...   ++..|  ..++++.++.=..               
T Consensus       391 f~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~  470 (717)
T KOG1048|consen  391 FRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIA  470 (717)
T ss_pred             eehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhccc
Confidence            23333333322211000        01123333333322211   11111  1112222211000               


Q ss_pred             -------------hhch---h----------------------hhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHh
Q 016814          222 -------------QLGV---G----------------------FFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       222 -------------~~~~---~----------------------~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~  262 (382)
                                   .++.   +                      .+.+.++.....++. ..+..+-++++.+|..+.-..
T Consensus       471 ~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~  550 (717)
T KOG1048|consen  471 RLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGL  550 (717)
T ss_pred             ccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccC
Confidence                         0110   0                      123556666555554 456778888888888876533


Q ss_pred             Ch--H-----H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhccCCCc------cHHH
Q 016814          263 GP--E-----W-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASKDRVP------NIKF  327 (382)
Q Consensus       263 ~~--~-----~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~------~vR~  327 (382)
                      +.  +     . -.+..+|.+.+++...+..+-.+++.++..++...... ..-.+.+|.|...|-+..+      ++-.
T Consensus       551 ~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedtv~  630 (717)
T KOG1048|consen  551 WTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDTVR  630 (717)
T ss_pred             CcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHHHH
Confidence            22  1     1 23557889999999999999999999999998665543 4557889999999887765      3556


Q ss_pred             HHHHHHHHHh-hhhhH--HHHHHhHHHHHHHhcCCC-CccHHhHHHHHHHH
Q 016814          328 NVAKVLQSLI-PIVDQ--SMVEKTIRPCLVELTEDP-DVDVRFFATQAIQS  374 (382)
Q Consensus       328 ~a~~~l~~i~-~~~~~--~~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~  374 (382)
                      +++.+|..+. +.+.+  +.+...-++.|..+.... ++.+-.+|...+..
T Consensus       631 ~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~  681 (717)
T KOG1048|consen  631 AVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDV  681 (717)
T ss_pred             HHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHH
Confidence            6666776666 33322  234445556666655443 33444455444443

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=96.40  E-value=0.74  Score=41.99  Aligned_cols=274  Identities=14%  Similarity=0.123  Sum_probs=138.4

Q ss_pred             CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC---HH---HHHHhhhH
Q 016814           47 DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN---PE---LAIQHILP  117 (382)
Q Consensus        47 d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~---~~---~~~~~il~  117 (382)
                      -+|+.+=++.++.+..+.+...+-  ...+.+...+....+++ +|..-....++++.+.+...   ++   .+.+.++|
T Consensus        41 ~ENeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P  120 (435)
T PF03378_consen   41 AENEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFP  120 (435)
T ss_dssp             TC-HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHH
Confidence            446666666666665443333221  11123444444455555 58888999999999988754   23   46678899


Q ss_pred             hhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhch----hhH
Q 016814          118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIGI----DLL  189 (382)
Q Consensus       118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~~----~~~  189 (382)
                      .+...++..-.+.---+...++.+.+..+.+.   ....++|.+..- +=+...++ -+...-+..+.+.-+.    ...
T Consensus       121 ~f~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~  199 (435)
T PF03378_consen  121 PFQEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQ  199 (435)
T ss_dssp             HHHHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhh
Confidence            99887765433222333344444433222111   223444443321 21111122 1222222222222111    112


Q ss_pred             hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH
Q 016814          190 SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE  265 (382)
Q Consensus       190 ~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~  265 (382)
                      .+.++..+.+++.++..+  ..+.+.+..+...++.+.   +.+.++..+.+.++ .+.++.+...+..++.++-..|++
T Consensus       200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            267788888888877655  457788888888887755   34556666666665 455666777777778787777775


Q ss_pred             HHHh-------hhHHHHHhh-----hcC-cchHHHHHHHHHHHHhccccC---h--hhhhhhhHHHHHhhccCCCc
Q 016814          266 WAMQ-------HITPQVLEM-----INN-PHYLYRMTILRAISLLAPVMG---S--EITCSRLLPVVINASKDRVP  323 (382)
Q Consensus       266 ~~~~-------~l~~~l~~~-----l~~-~~~~~r~~a~~~l~~l~~~~~---~--~~~~~~~l~~l~~~l~d~~~  323 (382)
                      .+.+       .++..+.+.     +.. .+..-|..++-.+.++.....   .  ...+..+++.+++.+..+..
T Consensus       278 ~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~erKi~~vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~~p~~  353 (435)
T PF03378_consen  278 FLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIERKICAVGLTKLLCESPAFLSEYSQLWPPLLEALLKLLERPPE  353 (435)
T ss_dssp             HHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHHHHHHHHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHHTTST
T ss_pred             HHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchhhHHHHHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHcCCcc
Confidence            4321       122222221     111 233445555555555432222   1  13566777777777765543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism

Probab=96.37  E-value=0.75  Score=41.75  Aligned_cols=251  Identities=10%  Similarity=0.075  Sum_probs=136.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--HHHHHhhhHh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--ELAIQHILPC  118 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~  118 (382)
                      ..|++|.=-..+-+.+..+.+....+.    .....+..++.++.+++++-|......+..+-..+..  ..+...+-..
T Consensus        99 ~~e~~WpHL~~vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~i~~~  178 (409)
T PF01603_consen   99 FLEPSWPHLQLVYEILLRFIESPPFDPAKKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKSINNI  178 (409)
T ss_dssp             ---TTHHHHHHHHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHHHHHH
T ss_pred             ccccccHhHHHHHHHHHHHHHCccccHHHHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            345677766777777777776555444    3345788888999999999999988888886554422  2233333344


Q ss_pred             hhhhcC-CCchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCC-hHHHHHHHHhhHHhhhhhchhhHhhhH
Q 016814          119 VKELSS-DSSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEF-PDVRLNIISKLDQVNQVIGIDLLSQSL  193 (382)
Q Consensus       119 l~~~~~-d~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~-~~vr~~~~~~l~~~~~~~~~~~~~~~l  193 (382)
                      +.+.+. +....--..+.+.++.+...+.   ++.....+...+..+.+... .........++..+.+.-  ..+...+
T Consensus       179 ~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kd--p~l~~~~  256 (409)
T PF01603_consen  179 FYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKD--PSLAEPV  256 (409)
T ss_dssp             HHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH---GGGHHHH
T ss_pred             HHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhC--chhHHHH
Confidence            444333 2333333455566666655433   12222223333334443332 222333333333333211  1122344


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHHHHHHHHHHHH--HHHhChHHHH
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM  268 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~  268 (382)
                      +..+....--.+..-....+..+..+...+++..+.   ..++..+...+.+++..|-+.|+..+..-  ...+  ....
T Consensus       257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li--~~~~  334 (409)
T PF01603_consen  257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLI--SQNS  334 (409)
T ss_dssp             HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHH--HCTH
T ss_pred             HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHH--HhCh
Confidence            555555544445555567778888888888776665   34566667788899999999988765432  2222  1123


Q ss_pred             hhhHHHHHhhhc-----CcchHHHHHHHHHHHHhcc
Q 016814          269 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       269 ~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~  299 (382)
                      ..++|.+...+.     +-+..+|..+..++..+.+
T Consensus       335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~  370 (409)
T PF01603_consen  335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME  370 (409)
T ss_dssp             HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            456666666543     2345799999999888775

The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.58  Score=40.41  Aligned_cols=177  Identities=13%  Similarity=0.052  Sum_probs=114.9

Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HHHhhHHHHHHh
Q 016814           87 NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TIEQLLPIFLSL  161 (382)
Q Consensus        87 ~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~~~l~~~l~~~  161 (382)
                      .+.+-|..|+.-|..++..++..  .+....++.+...+++++..+|..|+..++...+.-++..   .....++.+...
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~  174 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI  174 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence            45778999999999999887654  3333455666669999999999999999999987665422   223344444443


Q ss_pred             -hcCCChHHHHHHHHhhHHhhhhhch--hhHh-hhHHHHHHHHhcC--CCchHHHHHHHHhHHHHhhhc--hhhhHHHHH
Q 016814          162 -LKDEFPDVRLNIISKLDQVNQVIGI--DLLS-QSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLG--VGFFDDKLG  233 (382)
Q Consensus       162 -l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~-~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~--~~~~~~~l~  233 (382)
                       -.|.+..+|..++-+++.+.....+  +.+. -.=...+...+++  .+.+.+..++..++.+.+.-.  .+......+
T Consensus       175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f  254 (342)
T KOG2160|consen  175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASSLGF  254 (342)
T ss_pred             HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence             4566788899999999888765432  2110 0112344555555  567778888888888775432  222223333


Q ss_pred             HH-HHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          234 AL-CMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       234 ~~-l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      +. +..+...-++++++.++..+-.+...+.
T Consensus       255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~  285 (342)
T KOG2160|consen  255 QRVLENLISSLDFEVNEAALTALLSLLSELS  285 (342)
T ss_pred             hHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence            33 3344555678888888887777766543

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=1.6  Score=45.14  Aligned_cols=149  Identities=9%  Similarity=0.010  Sum_probs=70.6

Q ss_pred             HHHHHHHHHH-hccchhHHHHHHHHHHHHHHHH--hC-hHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh
Q 016814          230 DKLGALCMQW-LQDKVYSIRDAAANNLKRLAEE--FG-PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  305 (382)
Q Consensus       230 ~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~--~~-~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~  305 (382)
                      +.++..+..+ ..+..|++|.++++.+..++-.  ++ .+.-++.+.-.+...+.|.+-.+|+.|+.++..+.++-....
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s~~~~ 1604 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGSKFQF 1604 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcccccc
Confidence            3444444432 2345667777766666666532  22 233345566666666666666677777777766664322221


Q ss_pred             hhhhhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCc-cHHhHHHHHHHHHHHHhc
Q 016814          306 TCSRLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDV-DVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~-~vr~~a~~al~~~~~~~~  380 (382)
                      ...+.-+.-........ ...+=.+...|+.+.-.++  +.....+|.....+.  +.++ .++..+-+++..+.....
T Consensus      1605 ~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafP--y~vP~wip~~L~~Ls~fa~e~~~i~~tvkktvseFrrth~ 1681 (1710)
T KOG1851|consen 1605 VSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFP--YVVPLWIPKPLMNLSSFARESAAIKQTVKKTVSEFRRTHA 1681 (1710)
T ss_pred             chHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhcc--ccchhhhHHHHHHHHhhcCCchHHHHHHHHHHHHHHHHhh
Confidence            11111111111111111 1122334444555444333  223445555555432  3333 366666777666655443

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=96.31  E-value=0.16  Score=38.64  Aligned_cols=51  Identities=10%  Similarity=0.113  Sum_probs=24.6

Q ss_pred             HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      .+|...+..+..++..--++.+ +.+++.+.+.++. +.......+..+..+.
T Consensus         3 ~i~~kl~~~l~~i~~~~~P~~W-p~~l~~l~~~~~~-~~~~~~~~L~iL~~l~   53 (148)
T PF08389_consen    3 FIRNKLAQVLAEIAKRDWPQQW-PDFLEDLLQLLQS-SPQHLELVLRILRILP   53 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTS-TTHHHHHHHHHHT-THHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHChhhC-chHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence            3455555555555544444444 4555555555544 2333334444444443

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=96.31  E-value=0.51  Score=39.17  Aligned_cols=138  Identities=13%  Similarity=0.089  Sum_probs=87.7

Q ss_pred             hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhh
Q 016814           40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCV  119 (382)
Q Consensus        40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l  119 (382)
                      ++.+..+..+++.....++.|..++..-.  .....++..+..+.+.+....+..+...+..+.+.-+.-  ...+-+.+
T Consensus         5 L~~~l~~~~~~~~~~~~L~~L~~l~~~~~--~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~--f~~L~~~L   80 (234)
T PF12530_consen    5 LLYKLGKISDPELQLPLLEALPSLACHKN--VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRH--FPFLQPLL   80 (234)
T ss_pred             HHHHhcCCCChHHHHHHHHHHHHHhccCc--cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchH--HHHHHHHH
Confidence            34446678888888888888888875432  333446666666667666666666666666665533322  01111222


Q ss_pred             hh---------hcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhh
Q 016814          120 KE---------LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       120 ~~---------~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      ..         .-++..+.+..+...++..++...+.  .-..+++.+...+ ++.++.++..+++++..+++.
T Consensus        81 ~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~--~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~  152 (234)
T PF12530_consen   81 LLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD--HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEA  152 (234)
T ss_pred             HHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh--hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence            22         11344566666666777777766554  3457888888888 777888888899998888743

>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length

Probab=96.28  E-value=0.79  Score=41.07  Aligned_cols=139  Identities=14%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             chHHHHHHHHHHHhhcc------ccChHhHHHhhHHHHHHhhcCCC--hHHHHHHHHhhHH--hhhhhchhhHhhhHHHH
Q 016814          127 SQHVRSALASVIMGMAP------LLGKDATIEQLLPIFLSLLKDEF--PDVRLNIISKLDQ--VNQVIGIDLLSQSLLPA  196 (382)
Q Consensus       127 ~~~vr~~a~~~l~~l~~------~~~~~~~~~~l~~~l~~~l~d~~--~~vr~~~~~~l~~--~~~~~~~~~~~~~llp~  196 (382)
                      +..+-..|+++++.+..      .++.+. ...++......+.+++  ..+....+..+..  +...+-.....+.++..
T Consensus        59 ~~~L~~qALkll~~~l~~~~i~~~l~~d~-~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~  137 (372)
T PF12231_consen   59 DSRLVIQALKLLGFFLYHPEIVSTLSDDF-ASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAA  137 (372)
T ss_pred             chHHHHHHHHHHHHHHccHHHHhhCChHH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHH
Confidence            45666777777777653      223222 2234444444444432  3344444443332  11111111222444444


Q ss_pred             HHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          197 IVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       197 l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      +..+-+ =++..+-...+..+..+....+.....  ...+|.+...+-+....+|..|..........++++.
T Consensus       138 l~~i~~~~~s~si~~erL~i~~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~  210 (372)
T PF12231_consen  138 LHNIKNRFPSKSIISERLNIYKRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNK  210 (372)
T ss_pred             HHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhH
Confidence            444432 233445556666666666655543332  3467777777778889999998888877777777643

Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=96.28  E-value=0.64  Score=40.04  Aligned_cols=175  Identities=11%  Similarity=0.108  Sum_probs=124.0

Q ss_pred             HHHHHHhcCC-CchHHHHHHHHhHHHHhhhchhhhHH---HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHH
Q 016814          195 PAIVELAEDR-HWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAM  268 (382)
Q Consensus       195 p~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~~~~~---~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~  268 (382)
                      ..+.+++.-. ...|...+++....+.+.+|++.+.+   -+.|-+..++....-.||-..++.+..+.-.+|..  ...
T Consensus        57 krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l  136 (307)
T PF04118_consen   57 KRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCL  136 (307)
T ss_pred             HHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHH
Confidence            3344444322 23789999999999999999877653   35667777778788899999999988888777762  123


Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh------H
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD------Q  342 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~------~  342 (382)
                      ..++..++..+.|++...-..+...+..+...++.+.|+..+.-.++     .++.+|..|+..+..-.....      .
T Consensus       137 ~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~~~~  211 (307)
T PF04118_consen  137 KGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDELSLS  211 (307)
T ss_pred             HHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCcccccccccc
Confidence            34555556667778888888889999999988888866665544333     468899999998877665544      1


Q ss_pred             H----H----HHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          343 S----M----VEKTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       343 ~----~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                      .    .    -...+..++...++|.+.-|++.+...+-.
T Consensus       212 ~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~  251 (307)
T PF04118_consen  212 SEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS  251 (307)
T ss_pred             hHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence            0    0    125677788888888888888876665543

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=96.26  E-value=0.16  Score=43.53  Aligned_cols=131  Identities=15%  Similarity=0.219  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hH-----HHHHHHHHHHhc--------cchhHHHHHHHHH
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FD-----DKLGALCMQWLQ--------DKVYSIRDAAANN  254 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~-----~~l~~~l~~~l~--------d~~~~vr~~a~~~  254 (382)
                      ..++|.+..++.|.+..+|..++..+..+....+...   +.     +.+.+.+...+.        +++..+-..+..+
T Consensus       118 ~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~  197 (282)
T PF10521_consen  118 PLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPA  197 (282)
T ss_pred             hHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHH
Confidence            5678888888888888888999988888887766544   22     334455555554        5667777778888


Q ss_pred             HHHHHHHhCh-------HHHHhhhHHHHHhhhc----CcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCC
Q 016814          255 LKRLAEEFGP-------EWAMQHITPQVLEMIN----NPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDR  321 (382)
Q Consensus       255 l~~~~~~~~~-------~~~~~~l~~~l~~~l~----~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~  321 (382)
                      +-.++.....       ..+.+.+...++..+.    -++..++...+..+..+...+|..  .+.+.++|.+.+.+.++
T Consensus       198 L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~l~~~l~np  277 (282)
T PF10521_consen  198 LLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPVLSQILENP  277 (282)
T ss_pred             HHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCC
Confidence            7777664211       1111222222333222    124677777777777777777754  35667777777766654

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=96.15  E-value=0.03  Score=38.56  Aligned_cols=68  Identities=25%  Similarity=0.374  Sum_probs=49.0

Q ss_pred             cchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814          242 DKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLPV  313 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~  313 (382)
                      ++.|.+|+.|++.++.++..++..  .....+...+.+.+.|++  ...+..|+..+..+    |.+.+..-++|.
T Consensus        17 ~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~   88 (92)
T PF07571_consen   17 DNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPN   88 (92)
T ss_pred             cchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccC
Confidence            568899999999999999888863  356677777888887664  66777777777766    444444455554

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=96.10  E-value=1  Score=40.73  Aligned_cols=96  Identities=11%  Similarity=0.083  Sum_probs=62.8

Q ss_pred             hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--
Q 016814           32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--  109 (382)
Q Consensus        32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--  109 (382)
                      .+..++..++.....--++..|...+.+|.-+-..  .-.....++..|+.++.-.+...|..+...+...++.+...  
T Consensus        16 ~FP~el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk--~~i~~~~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~k   93 (616)
T KOG2229|consen   16 NFPSELKDLLRTNHTVLPPELREKIVKALILLRNK--NLIVAEDLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHK   93 (616)
T ss_pred             hhhHHHHHHHHhccccCCHHHHHHHHHHHHHHhcc--CcCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcc
Confidence            34556777777776667889999999998755421  12222457888888887777788998888887777755332  


Q ss_pred             --HHHHhhhHhhhhhcCCCchH
Q 016814          110 --LAIQHILPCVKELSSDSSQH  129 (382)
Q Consensus       110 --~~~~~il~~l~~~~~d~~~~  129 (382)
                        .....+-..+..++.++++.
T Consensus        94 n~klnkslq~~~fsml~~~d~~  115 (616)
T KOG2229|consen   94 NDKLNKSLQAFMFSMLDQSDST  115 (616)
T ss_pred             cchHHHHHHHHHHHHHhCCCch
Confidence              12223334556667766664

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=96.01  E-value=0.41  Score=37.26  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHH---hhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh-
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAM---QHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE-  304 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~---~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~-  304 (382)
                      +.+...+..++++++++-|..++..+...++..|.+.+.   ...+..+...++.++ ..++..++.++..+....... 
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            345555666667767777777777777777665554432   234444555555443 556667777766665433321 


Q ss_pred             --------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          305 --------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       305 --------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                              +....+++.+++.+++  ......++.+|..+...+.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~p  146 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHP  146 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCC
Confidence                    1234455555666655  5567777777777776654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.90  E-value=0.91  Score=38.42  Aligned_cols=58  Identities=24%  Similarity=0.303  Sum_probs=41.0

Q ss_pred             CCCccHHHHHHHHHHHHhhhh-hHHHH-HHhHHHHHHHhc-CCCCccHHhHHHHHHHHHHH
Q 016814          320 DRVPNIKFNVAKVLQSLIPIV-DQSMV-EKTIRPCLVELT-EDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       320 d~~~~vR~~a~~~l~~i~~~~-~~~~~-~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~  377 (382)
                      ++.+.+|...++++-.+...- |-+.+ ...+.|.+..+- ..+++++|....+.++.+..
T Consensus       255 epdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  255 EPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVR  315 (353)
T ss_pred             CCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHh
Confidence            556789999999998876543 43333 356777777753 45788899888887776654

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.90  E-value=0.51  Score=43.09  Aligned_cols=139  Identities=15%  Similarity=0.192  Sum_probs=89.2

Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC--------CchHHHHHHHHhHHHHhh--h
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR--------HWRVRLAIIEYIPLLASQ--L  223 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~--------~~~vr~~~~~~l~~l~~~--~  223 (382)
                      .+.-+.+.+...++..|..++++|..       |.-.+.++|.|..++.+.        |-+.-..+++....+...  +
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~T-------DsGL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLET-------DSGLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhcc-------CccHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            33445556666788999988887754       222377888888776432        222222222222222221  1


Q ss_pred             chhhhHHHHHHHHHHHh----------ccchhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCc--chHHHHH
Q 016814          224 GVGFFDDKLGALCMQWL----------QDKVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMT  289 (382)
Q Consensus       224 ~~~~~~~~l~~~l~~~l----------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~  289 (382)
                      .-+.+..+++|.++.++          .|+.|.+|.-|+..+..+++.++...  ....++..+...+.|+  .+.....
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence            12344567888877654          46789999999999999999988643  4556777777777775  3777888


Q ss_pred             HHHHHHHhcc
Q 016814          290 ILRAISLLAP  299 (382)
Q Consensus       290 a~~~l~~l~~  299 (382)
                      ++..+..++.
T Consensus       361 ai~gL~~lg~  370 (576)
T KOG2549|consen  361 AIAGLSELGH  370 (576)
T ss_pred             HHHHHHHhhh
Confidence            8888877764

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.88  E-value=1.1  Score=39.23  Aligned_cols=188  Identities=15%  Similarity=0.084  Sum_probs=112.9

Q ss_pred             ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-------HH--H-HhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814           73 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-------LA--I-QHILPCVKELSSDSSQHVRSALASVIMGMA  142 (382)
Q Consensus        73 ~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-------~~--~-~~il~~l~~~~~d~~~~vr~~a~~~l~~l~  142 (382)
                      ...+++.++..+..=+.+.|+.+...+..+.+.-..+       ..  . ..++..+....++++...  .+-..+...+
T Consensus        74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial--~~g~mlRec~  151 (335)
T PF08569_consen   74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL--NCGDMLRECI  151 (335)
T ss_dssp             HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH--HHHHHHHHHT
T ss_pred             HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc--hHHHHHHHHH
Confidence            3567888888888889999999999999887753111       11  1 345566666555544321  2222222222


Q ss_pred             ccc--ChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh---hhHHHHHHHHhcCCCchHHHHHHH
Q 016814          143 PLL--GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSLLPAIVELAEDRHWRVRLAIIE  214 (382)
Q Consensus       143 ~~~--~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~---~~llp~l~~~~~d~~~~vr~~~~~  214 (382)
                      +.-  ......+..+-.+.+.+..++.++-..+...+..+.....   .+.+.   +.+...+..++.++|+-+|+..++
T Consensus       152 k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslk  231 (335)
T PF08569_consen  152 KHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLK  231 (335)
T ss_dssp             TSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHH
T ss_pred             hhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHH
Confidence            110  0111112333335567777888888888888777543321   11111   445667788889999999999999


Q ss_pred             HhHHHHhhhch-hh-----hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814          215 YIPLLASQLGV-GF-----FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       215 ~l~~l~~~~~~-~~-----~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  262 (382)
                      .|+.+...-.. ..     -.+.-+..++.+|+|++..+|-.|.+.+.-++.+-
T Consensus       232 LL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  232 LLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            99988643221 11     12456778889999999999999999998888653

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6)

Probab=95.84  E-value=0.046  Score=37.63  Aligned_cols=71  Identities=21%  Similarity=0.372  Sum_probs=53.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhh
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVK  120 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~  120 (382)
                      .|++|.+|..|++.++.++..++..  .....+...+.+.+.|++  ...+..|+.+|..+    |++.+..-++|.+.
T Consensus        16 ~~~h~~LRd~AA~lL~~I~~~~~~~~~~L~~Ri~~tl~k~l~d~~~~~~t~YGAi~gL~~l----G~~~vr~~ilP~l~   90 (92)
T PF07571_consen   16 VDNHWALRDFAASLLAQICRKFSSSYPTLQPRITRTLLKALLDPKKPLGTHYGAIVGLSAL----GPEAVRALILPNLK   90 (92)
T ss_pred             CcchHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH----HHHHHHHhhccCcC
Confidence            4678999999999999999999874  344568888888888764  56788888888876    44544445666543

; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=95.73  E-value=1.4  Score=39.24  Aligned_cols=108  Identities=10%  Similarity=0.150  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhh-----cCcchHHHHHHHHHHHHhc-ccc
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMI-----NNPHYLYRMTILRAISLLA-PVM  301 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l-----~~~~~~~r~~a~~~l~~l~-~~~  301 (382)
                      ++++..+..++.+.+......+.-++|.|+..=..  ....++++..+++.+     .|.+.+...+++.++..+. +..
T Consensus       314 p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~  393 (604)
T KOG4500|consen  314 PQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVS  393 (604)
T ss_pred             cHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCC
Confidence            56888899999999999999999999999874221  122334444444443     4667888889999999875 333


Q ss_pred             Chhhhh-hhhHHHHHhhccCCCccHHHHHHHHHHHHh
Q 016814          302 GSEITC-SRLLPVVINASKDRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       302 ~~~~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~  337 (382)
                      +...+. .-+...++..++-..|.|...-+.++..+.
T Consensus       394 nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~  430 (604)
T KOG4500|consen  394 NKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIR  430 (604)
T ss_pred             chhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            333222 335556777788788888877776666554

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.70  E-value=0.32  Score=36.77  Aligned_cols=98  Identities=17%  Similarity=0.234  Sum_probs=72.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~  120 (382)
                      ...+||..=...|..+..     . .....+.+..+.+.+.+.++.|...|+..+..+.+.+|..    .....++..+.
T Consensus        13 l~~~dw~~il~icD~I~~-----~-~~~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKS-----D-ENGAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhc-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            345677665555555542     1 2223457788888888899999999999999999999875    23446777788


Q ss_pred             hhcCC-CchHHHHHHHHHHHhhccccChH
Q 016814          121 ELSSD-SSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       121 ~~~~d-~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      .++.+ .++.|+..+...+..++..+..+
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~~  115 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKND  115 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            88877 77889999999999988777643

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]

Probab=95.70  E-value=1.3  Score=38.76  Aligned_cols=68  Identities=13%  Similarity=0.217  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC
Q 016814           51 RVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  124 (382)
Q Consensus        51 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~  124 (382)
                      ..++.+.+.+++.-+.+++-.  ...+..-+.++.|.+..||..|++.|..+++.    .....+.+.+.++++
T Consensus        39 k~k~lasq~ip~~fk~fp~la--~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~----d~~~rv~d~l~qLLn  106 (460)
T KOG2213|consen   39 KEKRLASQFIPRFFKHFPSLA--DEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG----DALSRVNDVLVQLLN  106 (460)
T ss_pred             HHHHHHHHHHHHHHhhCchhh--hHHHHhhhccccccchhhHHHHHhccchhccC----chhhhhHHHHHHHHH
Confidence            456677777777777665532  23466667788888888888888888887764    233455566666654

>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=95.66  E-value=0.71  Score=42.21  Aligned_cols=139  Identities=16%  Similarity=0.295  Sum_probs=91.8

Q ss_pred             hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC-hHHHH---HHHHhhHHhhhhh------
Q 016814          115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF-PDVRL---NIISKLDQVNQVI------  184 (382)
Q Consensus       115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~-~~vr~---~~~~~l~~~~~~~------  184 (382)
                      ....+.+.+.+.++..|..|...|..=.   |    ...++|.|..++.+.- ..+-.   ..+..+..+...+      
T Consensus       208 Yy~~It~a~~g~~~~~r~eAL~sL~TDs---G----L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np~i  280 (576)
T KOG2549|consen  208 YYKEITEACTGSDEPLRQEALQSLETDS---G----LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNPNI  280 (576)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhccCc---c----HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCCcc
Confidence            3444555666688889999887765422   2    4678888888876532 11111   1222233333222      


Q ss_pred             chhhHhhhHHHHHHHHh----------cCCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccc--hhHHHHH
Q 016814          185 GIDLLSQSLLPAIVELA----------EDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDK--VYSIRDA  250 (382)
Q Consensus       185 ~~~~~~~~llp~l~~~~----------~d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~--~~~vr~~  250 (382)
                      --+.+...++|.+..++          .|.+|.+|--++..+..++..++...  ..+.+...+.+.+.|+  .+.....
T Consensus       281 ~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~~~st~YG  360 (576)
T KOG2549|consen  281 FLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKKPLSTHYG  360 (576)
T ss_pred             chhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCCCchhhhh
Confidence            22456688999998875          47789999999999999999887543  3455667777777775  5677888


Q ss_pred             HHHHHHHHHH
Q 016814          251 AANNLKRLAE  260 (382)
Q Consensus       251 a~~~l~~~~~  260 (382)
                      ++..|..+..
T Consensus       361 ai~gL~~lg~  370 (576)
T KOG2549|consen  361 AIAGLSELGH  370 (576)
T ss_pred             HHHHHHHhhh
Confidence            8888877654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.62  E-value=1.2  Score=37.74  Aligned_cols=100  Identities=16%  Similarity=0.235  Sum_probs=65.9

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhh
Q 016814           41 IVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHIL  116 (382)
Q Consensus        41 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il  116 (382)
                      +.+++.+.+|.||+.|++.+..+... +...   +....++.+.+++++..+  -.-|+.++.++..... .+...+.++
T Consensus         8 lv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll~~~~   84 (353)
T KOG2973|consen    8 LVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLLQDLL   84 (353)
T ss_pred             HHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            45677888999999999887766544 2221   123478888999988776  3345566666655332 122333466


Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHhhcc
Q 016814          117 PCVKELSSDSSQHVRSALASVIMGMAP  143 (382)
Q Consensus       117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~  143 (382)
                      ..+...+.|+.+..-...+..+.++++
T Consensus        85 k~l~~~~~~p~~~lad~~cmlL~NLs~  111 (353)
T KOG2973|consen   85 KVLMDMLTDPQSPLADLICMLLSNLSR  111 (353)
T ss_pred             HHHHHHhcCcccchHHHHHHHHHHhcc
Confidence            666777778777777777788877765

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.54  E-value=5.7  Score=45.01  Aligned_cols=282  Identities=13%  Similarity=0.150  Sum_probs=159.9

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh----C-HH-----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL----N-PE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~----~-~~-----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      ..++.+.+.+..++..++.++..++..+....    + ++     .+...+++.+.+++.|+.|.-|.+.+..++.+...
T Consensus       984 i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~~ 1063 (3550)
T KOG0889|consen  984 TFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIES 1063 (3550)
T ss_pred             HHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehhh
Confidence            37899999999999999999999998875543    2 11     45678889999999999999999999988888877


Q ss_pred             cChHhHH---HhhHHHHHHhhcCCChHHHH----HHHHhhHHh----hhhhchh----hHhhhHHHHHHHHhcCCCchHH
Q 016814          145 LGKDATI---EQLLPIFLSLLKDEFPDVRL----NIISKLDQV----NQVIGID----LLSQSLLPAIVELAEDRHWRVR  209 (382)
Q Consensus       145 ~~~~~~~---~~l~~~l~~~l~d~~~~vr~----~~~~~l~~~----~~~~~~~----~~~~~llp~l~~~~~d~~~~vr  209 (382)
                      ++.....   ..++..+...+.|...++-.    .+-..+..+    ....+.+    .....++..+..-+.+++..||
T Consensus      1064 ~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~VR 1143 (3550)
T KOG0889|consen 1064 MPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDVR 1143 (3550)
T ss_pred             chHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            6632222   23333344444443222221    111122221    1111111    1123445555555678888999


Q ss_pred             HHHHHHhHHHHhhhchhhhH------HHH-HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--Hhhh------HHH
Q 016814          210 LAIIEYIPLLASQLGVGFFD------DKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHI------TPQ  274 (382)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~------~~l-~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l------~~~  274 (382)
                      ..+...+..+++..|.+...      +-+ .|.+...+..-...+.-..+.++...+. .+++.+  ...+      +..
T Consensus      1144 ~~~~~~L~~i~~~s~~~v~~L~~p~K~~ll~p~f~k~lr~~p~~~qig~vd~~~fC~~-l~p~~f~~~~~l~~l~~~~~~ 1222 (3550)
T KOG0889|consen 1144 EFSQKLLRLISELSGKSVVKLLEPFKDVLLSPIFKKPLRALPFTIQIGHLDAITFCLS-LGPCLFDFTEELYRLKRFLIA 1222 (3550)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccccccCCHHHHhhhHHHHHHHHH-cCCcccCchHHHHHHHHHHHH
Confidence            99999999999877654321      111 2222222222223333333444333332 333211  1101      111


Q ss_pred             HHh--------hhcCc-------chHHHHHHHHHHHHhccccC-----hhhhhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814          275 VLE--------MINNP-------HYLYRMTILRAISLLAPVMG-----SEITCSRLLPVVINASKDRVPNIKFNVAKVLQ  334 (382)
Q Consensus       275 l~~--------~l~~~-------~~~~r~~a~~~l~~l~~~~~-----~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  334 (382)
                      +..        ..+..       ....|.++...+........     ..++.++++-.+++.+..+.+++-..+...+.
T Consensus      1223 La~~~~~~~~~i~k~~~~k~~~~l~~Lr~~ci~ll~~~~~~~d~~~~~~~~~r~kii~v~fk~l~~~~~Ei~~~~~~~l~ 1302 (3550)
T KOG0889|consen 1223 LADAEEDELATIQKTSDYKNSSSLVRLRVACIKLLAACMKLSDFRTPQHAELREKIIAVFFKSLYKRSSELIEVALEGLR 1302 (3550)
T ss_pred             hhhhhhhhhhhhhcccccccccccccchhHHHHHHHHHHhcccccchhhhhhhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            100        11111       12357777776665432221     12467889999999999889999988888887


Q ss_pred             HHhhh---hhHHHHHHhHHHHHHHhc
Q 016814          335 SLIPI---VDQSMVEKTIRPCLVELT  357 (382)
Q Consensus       335 ~i~~~---~~~~~~~~~i~~~l~~l~  357 (382)
                      .....   ++.+......-|.+..+.
T Consensus      1303 ~v~~~~~~~~ke~lq~~lrplL~~l~ 1328 (3550)
T KOG0889|consen 1303 KVLAQDVKLPKELLQSHLRPLLMNLS 1328 (3550)
T ss_pred             hhhhccccccHHHHHhhHHHHHHhhh
Confidence            76543   333444444445555443

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.53  E-value=0.68  Score=40.42  Aligned_cols=143  Identities=12%  Similarity=0.102  Sum_probs=77.0

Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH--HhhhHHHHHhhhcC----cchHHHHHHHHHHHHhccccC--hhh
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINN----PHYLYRMTILRAISLLAPVMG--SEI  305 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~--~~~l~~~l~~~l~~----~~~~~r~~a~~~l~~l~~~~~--~~~  305 (382)
                      ..+.+.+..+++.++..|+..++.++...+....  ...+++.+++.+.+    ++......++.+++.+...-.  ...
T Consensus       108 ~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f  187 (312)
T PF03224_consen  108 SPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVF  187 (312)
T ss_dssp             HHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHH
Confidence            3444578888999999999999999976554322  13566777666654    445567888999998874422  223


Q ss_pred             hhhhhHHHHHhhc-----cCCCccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHH
Q 016814          306 TCSRLLPVVINAS-----KDRVPNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTED-PDVDVRFFATQAIQSI  375 (382)
Q Consensus       306 ~~~~~l~~l~~~l-----~d~~~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~  375 (382)
                      .....++.+...+     .+....+...---.+..+.-.+.++    .....++|.+..++.+ +..+|-+-+..++..+
T Consensus       188 ~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl  267 (312)
T PF03224_consen  188 WKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL  267 (312)
T ss_dssp             HTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred             HhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            3456667777777     3333333333333333333333332    2234577777776554 3444555555555544


Q ss_pred             H
Q 016814          376 D  376 (382)
Q Consensus       376 ~  376 (382)
                      .
T Consensus       268 ~  268 (312)
T PF03224_consen  268 L  268 (312)
T ss_dssp             T
T ss_pred             H
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF05536 Neurochondrin: Neurochondrin

Probab=95.51  E-value=2.3  Score=40.23  Aligned_cols=176  Identities=13%  Similarity=0.096  Sum_probs=111.6

Q ss_pred             chHHHHHHHHHHHhhccccChH----hHHHhhHHHHHHhhcCCCh-HHHHHHHHhhHHhhhh-hchhhHh-hhHHHHHHH
Q 016814          127 SQHVRSALASVIMGMAPLLGKD----ATIEQLLPIFLSLLKDEFP-DVRLNIISKLDQVNQV-IGIDLLS-QSLLPAIVE  199 (382)
Q Consensus       127 ~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l~~~l~d~~~-~vr~~~~~~l~~~~~~-~~~~~~~-~~llp~l~~  199 (382)
                      ....+..++..++.++.  .++    ...-.-+|.+.+.+...+. .+...+.+.+..++.. -|.+.+. ...+|.+.+
T Consensus        70 ~~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e  147 (543)
T PF05536_consen   70 PEEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE  147 (543)
T ss_pred             HHHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH
Confidence            34567777888888875  222    1234556888888777666 7888888888877633 1222221 235666666


Q ss_pred             HhcCCCchHHHHHHHHhHHHHhhhchhhhH------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--------H
Q 016814          200 LAEDRHWRVRLAIIEYIPLLASQLGVGFFD------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--------E  265 (382)
Q Consensus       200 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--------~  265 (382)
                      ...+ +......++..+..+....+.+.+.      ..+++.+...........+-.+++.++.+....+.        +
T Consensus       148 i~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~  226 (543)
T PF05536_consen  148 IIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSP  226 (543)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChh
Confidence            6655 5556677777777776666543322      24455555555555566677778888888766521        2


Q ss_pred             HHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccChhh
Q 016814          266 WAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGSEI  305 (382)
Q Consensus       266 ~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~~~  305 (382)
                      .....+...+...+.++ ....|..++.....+.+.+|.++
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w  267 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW  267 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence            24455666666767654 47788889888888888887653

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=95.51  E-value=0.015  Score=33.19  Aligned_cols=25  Identities=36%  Similarity=0.397  Sum_probs=17.1

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHH
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGK   98 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~   98 (382)
                      +.+...+...+.|+++.||++|++.
T Consensus        17 ~~v~~~i~~rl~D~s~~VR~aav~l   41 (42)
T PF12765_consen   17 SDVQSAIIRRLSDSSPSVREAAVDL   41 (42)
T ss_pred             HHHHHHHHHHhcCCChHHHHHHHHH
Confidence            3566667777777777777777654

>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []

Probab=95.45  E-value=2  Score=39.25  Aligned_cols=212  Identities=8%  Similarity=0.073  Sum_probs=102.7

Q ss_pred             chHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhhhhch---h---hHhhhHHHHH
Q 016814          127 SQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAI  197 (382)
Q Consensus       127 ~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~---~---~~~~~llp~l  197 (382)
                      ++.+-++..+.+..+.+.+.+  ....+.+..++....+++ +|.----..++++.+.+....   +   .+.+.++|.+
T Consensus        43 NeylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f  122 (435)
T PF03378_consen   43 NEYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPF  122 (435)
T ss_dssp             -HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHH
Confidence            444444444444444333322  112344555555555553 355555566666666655432   2   3456778888


Q ss_pred             HHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccchhHHH---HHHHHHHHHHHHHhChHH----H
Q 016814          198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDKVYSIR---DAAANNLKRLAEEFGPEW----A  267 (382)
Q Consensus       198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~~~~vr---~~a~~~l~~~~~~~~~~~----~  267 (382)
                      ...+..+-.+.---+.+.++.+.+........   ..++|.+   +...-|+-|   -+....+..+++.-+...    .
T Consensus       123 ~~ILq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~L---l~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~  199 (435)
T PF03378_consen  123 QEILQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPL---LSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQ  199 (435)
T ss_dssp             HHHHHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHH---TSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH---cCcchhccCCCcCcHHHHHHHHHHhCchhhcchhh
Confidence            88777665544455566666666544411111   2233333   333333311   333444555554433321    2


Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhHH
Q 016814          268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQS  343 (382)
Q Consensus       268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~~  343 (382)
                      .+.++..+-.++.++...  ..+.+.+..+...++.+   .+...++..++..+. .+.+..+...+..++.++...|++
T Consensus       200 l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~  277 (435)
T PF03378_consen  200 LEPILGVFQKLIASKAND--HYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPD  277 (435)
T ss_dssp             CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHH
Confidence            234555565666655422  34667777777777765   355666666666554 444555666666666665555543

CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.

>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.44  E-value=3.1  Score=46.89  Aligned_cols=152  Identities=14%  Similarity=0.137  Sum_probs=105.0

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh----ChH------HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF----GPE------WAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~----~~~------~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  299 (382)
                      ..+++.+...+...+.+++.....++..+....    |..      .+...+++.+..+.-++.|..|...+..++.+..
T Consensus       983 ~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~~ 1062 (3550)
T KOG0889|consen  983 STFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLIE 1062 (3550)
T ss_pred             HHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeehh
Confidence            467888999999999999999999988886543    321      2445677788888889999999999999998887


Q ss_pred             ccChhh---hhhhhHHHHHhhccCCCccHHH----HHHHHHHHHhhhhhHH--------HHHHhHHHHHHHhcCCCCccH
Q 016814          300 VMGSEI---TCSRLLPVVINASKDRVPNIKF----NVAKVLQSLIPIVDQS--------MVEKTIRPCLVELTEDPDVDV  364 (382)
Q Consensus       300 ~~~~~~---~~~~~l~~l~~~l~d~~~~vR~----~a~~~l~~i~~~~~~~--------~~~~~i~~~l~~l~~d~~~~v  364 (382)
                      .....+   +...++..+...++|...++..    .+-..+..+...+-.+        .....+...+..-+.+|+..|
T Consensus      1063 ~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~lv~eL~npN~~V 1142 (3550)
T KOG0889|consen 1063 SMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFIDELAEEERAKSAMNVFSPLVLELFNPNSDV 1142 (3550)
T ss_pred             hchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHcCCchHH
Confidence            777442   3455666667777776555444    3333333333322211        223344444444456788899


Q ss_pred             HhHHHHHHHHHHHHhcc
Q 016814          365 RFFATQAIQSIDHVMMS  381 (382)
Q Consensus       365 r~~a~~al~~~~~~~~~  381 (382)
                      |..+.+.+..++...|.
T Consensus      1143 R~~~~~~L~~i~~~s~~ 1159 (3550)
T KOG0889|consen 1143 REFSQKLLRLISELSGK 1159 (3550)
T ss_pred             HHHHHHHHHHHHHHcCC
Confidence            99999999999988764

>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=95.38  E-value=0.33  Score=36.84  Aligned_cols=55  Identities=22%  Similarity=0.073  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV   67 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~   67 (382)
                      +.||...+.++..++...-|+ .|+.+++.+.+..+. ++.......+.|..+.+.+
T Consensus         2 ~~i~~kl~~~l~~i~~~~~P~-~Wp~~l~~l~~~~~~-~~~~~~~~L~iL~~l~eEi   56 (148)
T PF08389_consen    2 PFIRNKLAQVLAEIAKRDWPQ-QWPDFLEDLLQLLQS-SPQHLELVLRILRILPEEI   56 (148)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTT-TSTTHHHHHHHHHHT-THHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHChh-hCchHHHHHHHHhcc-chhHHHHHHHHHHHHHHHH
Confidence            345666666666666654332 356666666666555 3455555555555555433

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....

>PF12054 DUF3535: Domain of unknown function (DUF3535); InterPro: IPR022707 This presumed domain is functionally uncharacterised

Probab=95.37  E-value=2  Score=39.38  Aligned_cols=79  Identities=19%  Similarity=0.116  Sum_probs=58.7

Q ss_pred             cHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH---HHhhHHHHHHhhcC
Q 016814           88 EAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKD  164 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~---~~~l~~~l~~~l~d  164 (382)
                      -..-|..|+++||.++..++.+.....+-+.+..++++++..-|..++..+..++........   .+.+.+.+.+.+++
T Consensus       100 v~r~Ri~aA~ALG~l~~~~~~~~~~~~~~~~L~~~L~S~sa~qR~~aalvl~ewa~~~~~~~~~~~~~~l~~~L~~~L~~  179 (441)
T PF12054_consen  100 VIRARIAAAKALGLLLSYWPESSLQEIFQPLLLPYLNSPSATQRLLAALVLEEWAKACKERNPSPPPQALSPRLLEILEN  179 (441)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhCccccCCccHHHHHHHHHHHHcC
Confidence            356799999999999999876654444445788899999999999999999999876653221   24666777777775


Q ss_pred             CC
Q 016814          165 EF  166 (382)
Q Consensus       165 ~~  166 (382)
                      +.
T Consensus       180 ~~  181 (441)
T PF12054_consen  180 PE  181 (441)
T ss_pred             CC
Confidence            43

This domain is found in eukaryotes. This domain is typically between 439 to 459 amino acids in length. This domain is found associated with PF00271 from PFAM, PF02985 from PFAM, and PF00176 from PFAM. This domain has two completely conserved residues (P and K) that may be functionally important.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=95.37  E-value=0.29  Score=36.97  Aligned_cols=97  Identities=12%  Similarity=0.176  Sum_probs=65.0

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHH
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVI  315 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~  315 (382)
                      +..++|..-...+..+..=  ..|+    ...+..+...+.++++.+...|+..+..+.++||..    .....++..+.
T Consensus        13 l~~~dw~~il~icD~I~~~--~~~~----k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~   86 (144)
T cd03568          13 LTSENWGLILDVCDKVKSD--ENGA----KDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELK   86 (144)
T ss_pred             CCCcCHHHHHHHHHHHhcC--CccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHH
Confidence            3445665544444444321  1122    346667777778888888888888888888888864    23456677777


Q ss_pred             hhccC-CCccHHHHHHHHHHHHhhhhhH
Q 016814          316 NASKD-RVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       316 ~~l~d-~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      +++.+ .++.||..++..+..++..+..
T Consensus        87 kl~~~~~~~~Vk~kil~li~~W~~~f~~  114 (144)
T cd03568          87 KLINDRVHPTVKEKLREVVKQWADEFKN  114 (144)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHhCC
Confidence            77777 5677888888888888877764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.33  E-value=2.9  Score=40.31  Aligned_cols=285  Identities=14%  Similarity=0.120  Sum_probs=149.7

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC--Cccccc---chHHHHHH
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG--PEPTRM---DLVPAYVR   82 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~--~~~~~~---~ll~~l~~   82 (382)
                      ..-.+|+..+-.++.....--+.+..+.+.-.+..+++|. |-.||-++++.+.-+.+.+.  ++.+.+   .+...+.+
T Consensus       499 ~~RiiRRRVa~ilg~Wvsvq~~~e~k~l~Y~a~lnLL~d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfk  578 (978)
T KOG1993|consen  499 NSRIIRRRVAWILGQWVSVQQKLELKPLLYCAFLNLLQDQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFK  578 (978)
T ss_pred             chhHHHHHHHHHHhhhhheechHhHHHHHHHHHHHhcCccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHH
Confidence            3456789999999988876556666666777777888888 67889999999887776443  222211   12223333


Q ss_pred             hcCC-CcHHHHHHHHHHHHHHHHhhCHH-----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhh
Q 016814           83 LLRD-NEAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQL  154 (382)
Q Consensus        83 ~l~d-~~~~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l  154 (382)
                      ++.. ++-+-|...+..++.++...+.-     ...-.++|.+.+-.+ +.+-.|.+...++.++...+|.+.  ..+-+
T Consensus       579 ll~~~~e~Dtk~~VL~~ls~lI~r~~e~I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL  657 (978)
T KOG1993|consen  579 LLKAVEECDTKTSVLNLLSTLIERVSEHIAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFL  657 (978)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHH
Confidence            3332 23445677777777777665433     112245566555544 567789999999999999888643  34666


Q ss_pred             HHHHHHhhcCCChHH---HHHHHHhhHHhhhhhc--hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH
Q 016814          155 LPIFLSLLKDEFPDV---RLNIISKLDQVNQVIG--IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD  229 (382)
Q Consensus       155 ~~~l~~~l~d~~~~v---r~~~~~~l~~~~~~~~--~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~  229 (382)
                      +|.+.....-++|+-   -+....-...+..+..  .+.+ -.+.|.+...+.-..... ..+++.+....-..++.+..
T Consensus       658 ~pVIel~~D~~sP~hv~L~EDgmeLW~~~L~n~~~l~p~l-l~L~p~l~~~iE~ste~L-~t~l~Ii~sYilLd~~~fl~  735 (978)
T KOG1993|consen  658 YPVIELSTDPSSPEHVYLLEDGMELWLTTLMNSQKLTPEL-LLLFPHLLYIIEQSTENL-PTVLMIISSYILLDNTVFLN  735 (978)
T ss_pred             HHHHHHhcCCCCCceeehhhhHHHHHHHHHhcccccCHHH-HHHHHHHHHHHHhhhhhH-HHHHHHHHHHHhhccHHHHH
Confidence            677665554444432   2222222222222211  1122 345666666554333222 22333333322222333222


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh------HHHHhhhHHHHHhhh--cCcchHHHHHHHHHHHHh
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP------EWAMQHITPQVLEMI--NNPHYLYRMTILRAISLL  297 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l--~~~~~~~r~~a~~~l~~l  297 (382)
                      .. ..-+.+.+.+--.+||.....++-++.+.+=.      ..+...++|.++..+  +++.+.+--..+..++.+
T Consensus       736 ~y-~~~i~k~~~~~l~dvr~egl~avLkiveili~t~~il~~~~~~~~L~~lf~~I~~~~~yP~~~~~yl~vvaRi  810 (978)
T KOG1993|consen  736 DY-AFGIFKKLNDLLDDVRNEGLQAVLKIVEILIKTNPILGSLLFSPLLSRLFLSIAENDKYPYVMGEYLLVVARI  810 (978)
T ss_pred             HH-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhhcchhhHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence            22 12222223333344555555554444433211      112234555555433  445555555555555544

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=95.20  E-value=1.3  Score=35.38  Aligned_cols=70  Identities=14%  Similarity=0.081  Sum_probs=55.6

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL  106 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~  106 (382)
                      +..++-+.+++-+++..+|..+++.+..+.+..=-.  ..+.+|.++.+..|+++.+|..|...+..+.+..
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn--P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN--PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC--hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            455666777888999999999999999877522112  2357999999999999999999999999886644

>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=2.7  Score=38.72  Aligned_cols=293  Identities=14%  Similarity=0.129  Sum_probs=157.6

Q ss_pred             chHHHHHHhcCCC---cHHHHHHHHHHHHHHHH--hhCHHHHHH--hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh
Q 016814           75 DLVPAYVRLLRDN---EAEVRIAAAGKVTKFCR--ILNPELAIQ--HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        75 ~ll~~l~~~l~d~---~~~VR~~a~~~l~~l~~--~~~~~~~~~--~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .++..+..+++++   +..+-..+++++++-..  .+.++.+..  .++......+++.  ..-..+..++..+......
T Consensus       153 ~~L~~l~~lLe~~~l~~~~~l~~Vl~~l~SWl~~~~~~~d~v~a~~pLi~l~F~sl~~~--~lhe~At~cic~ll~~~~~  230 (559)
T KOG2081|consen  153 KVLVFLSDLLERSDLKSSDDLEQVLRCLGSWLRLHVFPPDQVLASFPLITLAFRSLSDD--ELHEEATECICALLYCSLD  230 (559)
T ss_pred             HHHHHHHHHHhhcCCChhhHHHHHHHHHhhhhhhccCCHHHHHhhhHHHHHHHHHcccc--hhhHHHHHHHHHHHHHhhh
Confidence            3555555555443   35677778888887766  456664433  3455556666643  3344555555544322210


Q ss_pred             -H--------hH-HHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhh------chhhHhhhHHHHHHHHhcCCCchHHH
Q 016814          148 -D--------AT-IEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVI------GIDLLSQSLLPAIVELAEDRHWRVRL  210 (382)
Q Consensus       148 -~--------~~-~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~------~~~~~~~~llp~l~~~~~d~~~~vr~  210 (382)
                       +        .+ ...++|...+ ....++.+-+.+...-+..+++..      +++.+ -.++..+.-..+.++|+|-.
T Consensus       231 ~~~~~~~~~~l~~~v~~L~~~~~~a~~~~d~d~~~a~~RIFtel~eaf~~~i~~np~~~-l~~vellLl~~~h~~~evie  309 (559)
T KOG2081|consen  231 RSEGLPLAAILFIGVIILETAFHLAMAGEDLDKNEAICRIFTELGEAFVVLISTNPEEF-LRIVELLLLVAGHNDTEVIE  309 (559)
T ss_pred             hhccCchhHHHhccccccchHHHHhhcccCHHHHHHHHHHHHHHHHHHHHHHhhCCCcc-hhHHHHHHHhccCCchhhhh
Confidence             0        00 1223332222 234456666666666666665543      22222 23344444455677776655


Q ss_pred             HHHHHhHHHHhhhc---h----hhhHHH---HHHHHHHHhc------------cchhHHHHHHHHHHHHHHHHhChHHHH
Q 016814          211 AIIEYIPLLASQLG---V----GFFDDK---LGALCMQWLQ------------DKVYSIRDAAANNLKRLAEEFGPEWAM  268 (382)
Q Consensus       211 ~~~~~l~~l~~~~~---~----~~~~~~---l~~~l~~~l~------------d~~~~vr~~a~~~l~~~~~~~~~~~~~  268 (382)
                      .....-..+.+.+-   .    ..|.+.   ++..+..-.+            ++-.+-|......+..++...|.....
T Consensus       310 ~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~~v~dvl~Dv~~iigs~e~l  389 (559)
T KOG2081|consen  310 ASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRLKVGDVLKDVAFIIGSDECL  389 (559)
T ss_pred             hhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHHHHHHHHHHHHHHhCcHHHH
Confidence            54444433333221   1    111222   2222222111            123467888899999999888886554


Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc--CCCccHHHHHHHHHHHHhhhhhHHH-H
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSM-V  345 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~~-~  345 (382)
                      +++.-.+.+  .++.|..-++++..+..++.+..++  .+.++|.+++...  +....+|..++..+|.+.+.+.... .
T Consensus       390 k~~~~~l~e--~~~~We~~EAaLF~l~~~~~~~~~~--e~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~~p~~  465 (559)
T KOG2081|consen  390 KQMYIRLKE--NNASWEEVEAALFILRAVAKNVSPE--ENTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQHPEL  465 (559)
T ss_pred             HHHHHHHcc--CCCchHHHHHHHHHHHHHhccCCcc--ccchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHhCcHH
Confidence            544444444  4667999999999999999888864  3556666665543  2234499999999999887765432 2


Q ss_pred             HHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          346 EKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ..-++..+.....+..  .-..++.++..+.
T Consensus       466 le~v~~~~~~~~~~~~--~as~~a~~~~~i~  494 (559)
T KOG2081|consen  466 LEPVLRYIRQGLQLKR--LASAAALAFHRIC  494 (559)
T ss_pred             HHHHHHHHHHHhhhcc--hhHHHHHHHHHHH
Confidence            2233333333333322  4445555554443

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.08  E-value=0.58  Score=41.06  Aligned_cols=107  Identities=15%  Similarity=0.032  Sum_probs=58.7

Q ss_pred             HHHhcCCCchHHHHHHHHhHHHHhhhchhhh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH---HHhhhH
Q 016814          198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW---AMQHIT  272 (382)
Q Consensus       198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~---~~~~l~  272 (382)
                      ..-+++.|-.+|..+...+..+.........  ...+++-+..+..|.+..||.+..+.+..++....++.   +...++
T Consensus        64 l~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~~~l~~  143 (393)
T KOG2149|consen   64 LSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPMVSLLM  143 (393)
T ss_pred             HhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcchHHHHH
Confidence            3334566666666666666665554211111  12234444445566666666666666666655554433   334455


Q ss_pred             HHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814          273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSE  304 (382)
Q Consensus       273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  304 (382)
                      |++...+.+..+.+|.-+...+..+...+++.
T Consensus       144 ~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  144 PYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            55555556666666666666666666666554

>KOG2149 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.06  E-value=0.8  Score=40.26  Aligned_cols=112  Identities=18%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---H
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---T  150 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~  150 (382)
                      -+.-+...+...+..||+.|+..+..+....+.+  .....+++.+.++.-|.+..||......+..++....++.   .
T Consensus        59 tlkeLl~qlkHhNakvRkdal~glkd~l~s~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~~sp~  138 (393)
T KOG2149|consen   59 TLKELLSQLKHHNAKVRKDALNGLKDLLKSHPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKEDQSPM  138 (393)
T ss_pred             cHHHHHhhhcCchHhhhHHHHHHHHHHHHhChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhhhcch
Confidence            3555556678899999999999999988874333  2345678888889999999999999999998776666544   3


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~  187 (382)
                      ...+.+++...+....+++|..+.+.+..+...+++.
T Consensus       139 ~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~  175 (393)
T KOG2149|consen  139 VSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDT  175 (393)
T ss_pred             HHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChH
Confidence            4667788888888889999999999999988887754

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.96  E-value=0.74  Score=34.51  Aligned_cols=96  Identities=16%  Similarity=0.177  Sum_probs=62.2

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHH
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVI  315 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~  315 (382)
                      +.+++|..-...+..+..  ..-|+    ...+..+...+.++++.+...|+..+..+.++||..+    ....++..+.
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK--EPEGP----QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc--CCccH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            445566554444444432  11121    3355667777788888888888888888888888652    2345666667


Q ss_pred             hhccC------CCccHHHHHHHHHHHHhhhhh
Q 016814          316 NASKD------RVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       316 ~~l~d------~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      +.+.+      .+..||..++..+..+...++
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~  119 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELP  119 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            76643      456799999998888887765

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG1851 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.92  E-value=2.2  Score=44.30  Aligned_cols=150  Identities=14%  Similarity=0.171  Sum_probs=96.0

Q ss_pred             hhHHHHHHH-HhcCCCchHHHHHHHHhHHHHh--hhc-hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          191 QSLLPAIVE-LAEDRHWRVRLAIIEYIPLLAS--QLG-VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       191 ~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~--~~~-~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      ..++..+.. ...+.+|++|.+.+..+....-  .++ .+.-.+.+...+..++.|.+.+||+.|+.++.-+...- ...
T Consensus      1525 ~e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~s-~~~ 1603 (1710)
T KOG1851|consen 1525 PEFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRRDDIRKLLESLLNDDQIEVREEAAKCLSGLLQGS-KFQ 1603 (1710)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHhcc-ccc
Confidence            445555553 3456789999999988876643  223 33334678888999999999999999999999988632 211


Q ss_pred             HHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          267 AMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       267 ~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      +..+......+...  ......+..|...++.++-.++..  .+..+.+..+-....++ ..++.++-+++..+......
T Consensus      1604 ~~~~k~d~~~~~~~s~s~~~i~~HgavlgLgA~VlafPy~vP~wip~~L~~Ls~fa~e~-~~i~~tvkktvseFrrth~D 1682 (1710)
T KOG1851|consen 1604 FVSDKRDTTSNILQSKSKDEIKAHGAVLGLGAIVLAFPYVVPLWIPKPLMNLSSFARES-AAIKQTVKKTVSEFRRTHAD 1682 (1710)
T ss_pred             cchHhhhhhhhhhhhcchHHHHhhhhHHHHHHHHHhccccchhhhHHHHHHHHhhcCCc-hHHHHHHHHHHHHHHHHhhh
Confidence            22222223333222  234667788888998887665532  23334444444444554 66888888888888765543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=94.80  E-value=2.8  Score=37.39  Aligned_cols=331  Identities=12%  Similarity=0.018  Sum_probs=152.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhC------CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHH---
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVG------PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAI---  112 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~------~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~---  112 (382)
                      .+.-.+..||....++++.++..--      ....-...+..+.+..++++.+|-..+.++|++++-.-...  .+.   
T Consensus        50 ~i~~~~~tv~~~qssC~A~~sk~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lg  129 (604)
T KOG4500|consen   50 GIMTASDTVYLFQSSCLADRSKNEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLG  129 (604)
T ss_pred             ceeeccchhhhhhHHHHHHHhhhHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcC
Confidence            3344455788888888877764211      11122346777778888888899999999999987543221  111   


Q ss_pred             --HhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChH-----hHHHhhHHHHHHhh--cCCChHHHHHHHHhhHHhhh
Q 016814          113 --QHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD-----ATIEQLLPIFLSLL--KDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       113 --~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-----~~~~~l~~~l~~~l--~d~~~~vr~~~~~~l~~~~~  182 (382)
                        +.++..+...+...++.-.+-..-..+.+...+ +.+     ...-.++|-+...+  .-.+...-..+.-.+..+.+
T Consensus       130 Gaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls  209 (604)
T KOG4500|consen  130 GAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLS  209 (604)
T ss_pred             CceehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHH
Confidence              124555555554444322211111122221111 111     11123333332222  11222333333333333322


Q ss_pred             hhch----hhHhhhHHHHHHHHh-cCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhcc-chhHHHHHHHHH
Q 016814          183 VIGI----DLLSQSLLPAIVELA-EDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQD-KVYSIRDAAANN  254 (382)
Q Consensus       183 ~~~~----~~~~~~llp~l~~~~-~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~  254 (382)
                      ....    ..+...+.-.+.+++ ..-++..+.-+.+.+...++.--.  ......++..+..+... ++..-+..+...
T Consensus       210 ~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l  289 (604)
T KOG4500|consen  210 FVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNL  289 (604)
T ss_pred             HHHHhhhhhhccchHHHHHHHHHHHhhccchhhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHH
Confidence            2211    111111222222222 122344445555555554432110  01111122222222221 111111122222


Q ss_pred             HHHHHHH-----hChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhc----
Q 016814          255 LKRLAEE-----FGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINAS----  318 (382)
Q Consensus       255 l~~~~~~-----~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l----  318 (382)
                      +...++.     .|.+.+     ..+++..+..++.+.+.....++.-+++.+++.=..-  ...+.++..++.++    
T Consensus       290 ~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~  369 (604)
T KOG4500|consen  290 FKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEK  369 (604)
T ss_pred             HHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            2222211     244331     2347788888888888889999999999998653321  22334444444433    


Q ss_pred             -cCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          319 -KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       319 -~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                       .|.+..+.-+++.+|..+.-...+.  .....+..++...++-..+.|...-.-.+.-
T Consensus       370 ~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM  428 (604)
T KOG4500|consen  370 DVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRM  428 (604)
T ss_pred             CCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHHHHHhcCCcchHHHHHHHHH
Confidence             3556677788889998887654432  2233344445555555555555554444443

>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes

Probab=94.79  E-value=1.8  Score=35.22  Aligned_cols=133  Identities=14%  Similarity=0.182  Sum_probs=75.3

Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC-CCchHHHHH-HHHhHHHHhhhchhhhHH
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED-RHWRVRLAI-IEYIPLLASQLGVGFFDD  230 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d-~~~~vr~~~-~~~l~~l~~~~~~~~~~~  230 (382)
                      ........+..+...+.|..++..+.......+     ...++.+...+.+ ++|.+--.+ ...++.+....      +
T Consensus        51 ~~~~l~~~L~~~~~~E~~~la~~il~~~~~~~~-----~~~~~~~~~~~~~~~~W~~~D~~~~~~~~~~~~~~------~  119 (213)
T PF08713_consen   51 ELYELADELWESGYREERYLALLILDKRRKKLT-----EEDLELLEKWLPDIDNWATCDSLCSKLLGPLLKKH------P  119 (213)
T ss_dssp             HHHHHHHHHHCSSCHHHHHHHHHHHHHCGGG-------HHHHHHHHHCCCCCCCHHHHHHHTHHHHHHHHHHH------G
T ss_pred             HHHHHHHHHcCCchHHHHHHHHHHhHHHhhhhh-----HHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHhh------H
Confidence            344556666667666666666655554333222     2244555554433 355544443 22233332211      3


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  300 (382)
                      .+.+.+...+.+++..+|..++..+-.+...    ...+.++..+...+.|+++.+|.+...++..++..
T Consensus       120 ~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~----~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~  185 (213)
T PF08713_consen  120 EALELLEKWAKSDNEWVRRAAIVMLLRYIRK----EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKK  185 (213)
T ss_dssp             GHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG----CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh----cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHh
Confidence            4666777778887777777777665444433    22345666666777777888888888888777754

The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=94.79  E-value=1.3  Score=37.26  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=81.5

Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc------chHHHHHHHHHHHHhcccc--Chhhhhhh
Q 016814          238 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP------HYLYRMTILRAISLLAPVM--GSEITCSR  309 (382)
Q Consensus       238 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~------~~~~r~~a~~~l~~l~~~~--~~~~~~~~  309 (382)
                      .++...+...|.+|+.++..       +.-..+++|.++.++.+.      +-..-.+.......+.++-  =.+++..+
T Consensus       205 al~dEs~~~~r~aAl~sLr~-------dsGlhQLvPYFi~f~~eqit~Nl~nl~~LtTv~~m~~sLL~N~~iFvdPY~hq  277 (450)
T COG5095         205 ALLDESDEQTRDAALESLRN-------DSGLHQLVPYFIHFFNEQITKNLKNLEKLTTVVMMYSSLLKNKYIFVDPYLHQ  277 (450)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-------CccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCceeecHHHHH
Confidence            33555677888888887643       222356777777766542      3334445555555555442  24568888


Q ss_pred             hHHHHHhhcc------CCC----ccHHHHHHHHHHHHhhhhhHHHH--HHhHHHHHHHhcCC--CCccHHhHHHHHHHHH
Q 016814          310 LLPVVINASK------DRV----PNIKFNVAKVLQSLIPIVDQSMV--EKTIRPCLVELTED--PDVDVRFFATQAIQSI  375 (382)
Q Consensus       310 ~l~~l~~~l~------d~~----~~vR~~a~~~l~~i~~~~~~~~~--~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~  375 (382)
                      ++|.++.++-      +++    ..+|..|+..++.....++..+.  ...+...+.+..-|  ........|.+++..+
T Consensus       278 lmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l  357 (450)
T COG5095         278 LMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSIL  357 (450)
T ss_pred             HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhh
Confidence            8888776542      222    24999999999999998887642  35566666664434  3334556666666554


Q ss_pred             H
Q 016814          376 D  376 (382)
Q Consensus       376 ~  376 (382)
                      .
T Consensus       358 ~  358 (450)
T COG5095         358 S  358 (450)
T ss_pred             c
Confidence            3

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=94.78  E-value=1.1  Score=33.87  Aligned_cols=97  Identities=11%  Similarity=0.123  Sum_probs=69.5

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhh
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKE  121 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~  121 (382)
                      .++||..=...|..+..      ......+.+-.+.+.+++.++.|...|+..|..+.+.+|..    .....++..+..
T Consensus        18 ~~~dw~~ileicD~In~------~~~~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~   91 (142)
T cd03569          18 GEPDLASILEICDMIRS------KDVQPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKD   91 (142)
T ss_pred             CccCHHHHHHHHHHHhC------CCCCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHH
Confidence            45666666666665541      11223457778888888899999999999999999998875    223456666666


Q ss_pred             hcC-CCchHHHHHHHHHHHhhccccChH
Q 016814          122 LSS-DSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       122 ~~~-d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      ++. ..++.|+..++..+..++..++.+
T Consensus        92 l~~~~~~~~Vk~kil~li~~W~~~f~~~  119 (142)
T cd03569          92 LIKTTKNEEVRQKILELIQAWALAFRNK  119 (142)
T ss_pred             HHcccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            665 566789999999999888777644

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=94.74  E-value=1.1  Score=33.72  Aligned_cols=72  Identities=6%  Similarity=0.072  Sum_probs=38.7

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      ..+..+...+.++++.+...|+..+..+.++||..    .....++..+.+.+. ..++.||..++..+..+...++
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            34445555555566666666666666666666543    123445555555554 2334466666666666555444

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=94.71  E-value=3  Score=37.28  Aligned_cols=297  Identities=15%  Similarity=0.131  Sum_probs=144.0

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhh--hhcCC-CchHHHHHHHHHHHhhcccc-ChHhH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVK--ELSSD-SSQHVRSALASVIMGMAPLL-GKDAT  150 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~--~~~~d-~~~~vr~~a~~~l~~l~~~~-~~~~~  150 (382)
                      ..+.+..++-+++.+||.++.+.+..++..... ..+.+.=++.+.  .+-.| ++..=|..|.+.+..+...- |.+..
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~  105 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEI  105 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccC
Confidence            344444333333477888887777666442211 111111122221  22233 23345677777777666542 22333


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH-hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---  226 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~-~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---  226 (382)
                      ...++..+....+++++..|..++..+.+++-. .++-+ .-.-+..+.+.+.|....+-..++..+-.+...-...   
T Consensus       106 ~~~vvralvaiae~~~D~lr~~cletL~El~l~-~P~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl  184 (371)
T PF14664_consen  106 PRGVVRALVAIAEHEDDRLRRICLETLCELALL-NPELVAECGGIRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYL  184 (371)
T ss_pred             CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhh-CHHHHHHcCCHHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhh
Confidence            456666666777777777888887777776532 12211 1112333444444443334344444443333221111   


Q ss_pred             ---hhHHHHHHHHHHH----hccchh-HHHHHHHHHHHHHHHHhCh------HHHHhhhHHHHHhhhcCcchHHHHHHHH
Q 016814          227 ---FFDDKLGALCMQW----LQDKVY-SIRDAAANNLKRLAEEFGP------EWAMQHITPQVLEMINNPHYLYRMTILR  292 (382)
Q Consensus       227 ---~~~~~l~~~l~~~----l~d~~~-~vr~~a~~~l~~~~~~~~~------~~~~~~l~~~l~~~l~~~~~~~r~~a~~  292 (382)
                         .-.+.++..+...    .++... +.-+++..++..+.+.+.+      +.+  .-+..++..+.-++..+|...+.
T Consensus       185 ~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~--~~lksLv~~L~~p~~~ir~~Ild  262 (371)
T PF14664_consen  185 RPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDF--RGLKSLVDSLRLPNPEIRKAILD  262 (371)
T ss_pred             cCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCc--hHHHHHHHHHcCCCHHHHHHHHH
Confidence               1112333333332    222221 4556677788888776643      111  35666777888889899999999


Q ss_pred             HHHHhccccChhhhhh------hhHHHHH---hhcc----CCC---c---cHHHHHHH-HHHHHhhhhhHHHHHHhHHHH
Q 016814          293 AISLLAPVMGSEITCS------RLLPVVI---NASK----DRV---P---NIKFNVAK-VLQSLIPIVDQSMVEKTIRPC  352 (382)
Q Consensus       293 ~l~~l~~~~~~~~~~~------~~l~~l~---~~l~----d~~---~---~vR~~a~~-~l~~i~~~~~~~~~~~~i~~~  352 (382)
                      .+-.+...-.+++...      ...+.-.   ..++    +..   +   .-|..-.. -++.+..    -.+...+++.
T Consensus       263 ll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~----ili~~gL~~~  338 (371)
T PF14664_consen  263 LLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA----ILIEAGLLEA  338 (371)
T ss_pred             HHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH----HHHHcChHHH
Confidence            8888754332221110      0001000   0000    000   0   00111111 0111110    1234678888


Q ss_pred             HHHhcCCC-CccHHhHHHHHHHHHHHHh
Q 016814          353 LVELTEDP-DVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       353 l~~l~~d~-~~~vr~~a~~al~~~~~~~  379 (382)
                      |.++..+. +..++..|.--++.+....
T Consensus       339 L~~li~~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  339 LVELIESSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHHHHH
Confidence            98987775 8888888888887765543

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=94.55  E-value=0.077  Score=30.11  Aligned_cols=29  Identities=28%  Similarity=0.405  Sum_probs=23.1

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFC  103 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~  103 (382)
                      ..+|.+++++.++++.|++.|+.+|++++
T Consensus        12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            46888888888888888888888888765

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=94.54  E-value=2.5  Score=40.05  Aligned_cols=319  Identities=16%  Similarity=0.114  Sum_probs=160.5

Q ss_pred             cCCchHHHHHHHHHHHHHHhccCh-----------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc-
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEP-----------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-   74 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~-----------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~-   74 (382)
                      +.+....|..-..++..++-.+-|           ..+.+.+..++....++.+..+|..+++.+++++..++-....+ 
T Consensus       206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf  285 (993)
T COG5234         206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF  285 (993)
T ss_pred             cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence            455667777766666666655433           12344466667777788899999999999999999887543221 


Q ss_pred             -c---------hHHHHHHhcC--CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC--------CCchHHHHHH
Q 016814           75 -D---------LVPAYVRLLR--DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS--------DSSQHVRSAL  134 (382)
Q Consensus        75 -~---------ll~~l~~~l~--d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~--------d~~~~vr~~a  134 (382)
                       +         .+..+.+-++  +.++-+-..++-.++ ++...+-+.....+.|.+.+.+.        -+...+|.++
T Consensus       286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss  364 (993)
T COG5234         286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS  364 (993)
T ss_pred             HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence             1         2222222221  234445555544444 44444433222224444444332        1233678888


Q ss_pred             HHHHHhhccccChHh---HHHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHH
Q 016814          135 ASVIMGMAPLLGKDA---TIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL  210 (382)
Q Consensus       135 ~~~l~~l~~~~~~~~---~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~  210 (382)
                      +-.+-.+.....+..   ....++-.+.+ .+=|++-.+|.++..++-++.....+...-+.++..+       ||.--.
T Consensus       365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-------N~~sv~  437 (993)
T COG5234         365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-------NYVSVT  437 (993)
T ss_pred             ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-------cceecc
Confidence            777666655422111   12233333333 6778899999988877765543211122223344433       232111


Q ss_pred             HHHHHhHHHHhhhchhh-h---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCc---c
Q 016814          211 AIIEYIPLLASQLGVGF-F---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNP---H  283 (382)
Q Consensus       211 ~~~~~l~~l~~~~~~~~-~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~---~  283 (382)
                      ..-++-+.+...+.+.. +   .+.+-..+.+.+.+-+.+++.....++..+++. +.+  ....+|.+...+.++   +
T Consensus       438 r~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~-~~~--~p~yl~~Il~k~~sdfi~~  514 (993)
T COG5234         438 RISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKY-PKE--LPIYLPPILDKLSSDFIFG  514 (993)
T ss_pred             hhhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcC-ccc--CchhhhHHhhhCchhhhcc
Confidence            13333333333332111 0   112223345555566778888888888888652 222  122444444433322   1


Q ss_pred             hHHHHHHHHHHHHhccccChh------------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814          284 YLYRMTILRAISLLAPVMGSE------------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~------------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      +.+   ....++.+..-++.+            ...-.+.|.+-+...|..+-.|.-+..+++.+...
T Consensus       515 ~~i---l~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g~  579 (993)
T COG5234         515 YTI---LASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIFADDIRVFRAFFSEAFSVIIGA  579 (993)
T ss_pred             hhh---HHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHhcccchHHHHHHHHHHHHHhhh
Confidence            222   112222221111110            11123445556667777777777777777766543

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=94.53  E-value=1.7  Score=33.76  Aligned_cols=111  Identities=17%  Similarity=0.147  Sum_probs=78.0

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH---HHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh--
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---DKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP--  264 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~---~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~--  264 (382)
                      +.+...+.++++++++.-|..++..+...++..|.+.+.   ..++..+...++.+ ...+++.++.++..+....++  
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            666777888889999999999999999998887777663   35666677777654 467899999999999887654  


Q ss_pred             HHHH-------hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh
Q 016814          265 EWAM-------QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS  303 (382)
Q Consensus       265 ~~~~-------~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~  303 (382)
                      +..+       ..+++.+++.+.+  ......++.++..+...++.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt  147 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPT  147 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence            2122       2344445555554  45556777777777665543

>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins []

Probab=94.50  E-value=2  Score=34.44  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=20.8

Q ss_pred             hhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814          308 SRLLPVVINASKDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  336 (382)
                      ..+-..+.+.++|. +++|...+++|..+
T Consensus       170 ~~~a~~L~~~L~~~-~~LR~~Ic~aL~~L  197 (198)
T PF08161_consen  170 PSFAKLLGNALYDQ-PDLRPIICQALRRL  197 (198)
T ss_pred             HHHHHHHHHHHhcC-cchHHHHHHHHHHH
Confidence            55666677777774 78998888888765

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=94.49  E-value=0.73  Score=34.37  Aligned_cols=73  Identities=18%  Similarity=0.179  Sum_probs=46.6

Q ss_pred             hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH---H-HHhHHHHHHHhcCC---CCccHHhHHHHHHHHHHHHhcc
Q 016814          309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM---V-EKTIRPCLVELTED---PDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~---~-~~~i~~~l~~l~~d---~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ..+..+.+.++++++++...|+..|..+....|...   + ...++..+.++...   .+.+||..+...+..++..++.
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            445556666677777777777777777777766532   1 22445556665543   4666777777777777776654

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=94.49  E-value=4.4  Score=38.29  Aligned_cols=284  Identities=12%  Similarity=0.016  Sum_probs=133.8

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP  117 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  117 (382)
                      +..+.+++...+..++..+.-.++.......++.  .-.+-.+...+.+++..+|.+++-.|+-.-..-..+.+    +.
T Consensus       417 L~qldkylys~~~~ikaGaLLgigi~~~gv~ne~--dpalALLsdyv~~~~s~~ri~aIlGLglayaGsq~e~V----~~  490 (878)
T KOG2005|consen  417 LEQLDKYLYSDESYIKAGALLGIGISNSGVFNEC--DPALALLSDYLQSSSSIHRIGAILGLGLAYAGSQREEV----LE  490 (878)
T ss_pred             HHHHHHHhhcCCchhhhccceeeeeecccccccc--CHHHHHHHHhccCCCceeehHHhhhhHHhhcCCchHHH----HH
Confidence            3444455555555666666666664443332322  33566677788888889999988888765333334433    33


Q ss_pred             hhhhhcCCCchH--HHHHHHHHHHhhcc-ccChHhHHHhhHHHHHHhhc--CCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814          118 CVKELSSDSSQH--VRSALASVIMGMAP-LLGKDATIEQLLPIFLSLLK--DEFPDVRLNIISKLDQVNQVIGIDLLSQS  192 (382)
Q Consensus       118 ~l~~~~~d~~~~--vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~~l~--d~~~~vr~~~~~~l~~~~~~~~~~~~~~~  192 (382)
                      .+...+.|.+..  |...+.-+++.+.- ..+.+ .-..++.-+.+--+  -++.-.|- ..-.++  .-++|.....+.
T Consensus       491 lL~Pi~~d~~~~~ev~~~aslsLG~IfvGscn~d-vts~ilqtlmekse~El~d~~~RF-L~LGL~--llflgkqe~~d~  566 (878)
T KOG2005|consen  491 LLSPIMFDTKSPMEVVAFASLSLGMIFVGSCNED-VTSSILQTLMEKSETELEDQWFRF-LALGLA--LLFLGKQESVDA  566 (878)
T ss_pred             HHhHHhcCCCCchhHHHHHHhhcceeEEecCChH-HHHHHHHHHHHhhhhhhhchHHHH-HHHHHH--HHHhcccchHHH
Confidence            455556555554  55555555554432 22222 22222222222111  01111221 111111  122333322222


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhH-HHHHHHHHHHHHHHHhChHHHHh
Q 016814          193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYS-IRDAAANNLKRLAEEFGPEWAMQ  269 (382)
Q Consensus       193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~-vr~~a~~~l~~~~~~~~~~~~~~  269 (382)
                      +...+..+    +...|.. ...+-..+...|.....  +.  ..+.....+.... -.++-...++.-.-.+|.+.-.+
T Consensus       567 ~~e~~~~i----~~~~~~~-~~~lv~~caYaGTGnvl~Iq~--q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~e  639 (878)
T KOG2005|consen  567 VVETIKAI----EGPIRKH-ESILVKSCAYAGTGNVLKIQS--QLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSE  639 (878)
T ss_pred             HHHHHHHh----hhHHHHH-HHHHHHHhhccccCceEEech--hhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhH
Confidence            22222211    1111111 11111222222221110  00  1111222221110 00111222222222244444344


Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      ..+..+-..+.-.++.+|.+.=-+++-++..-+    .-.++..+-++.+|...++-.+++-++|.+...-.+
T Consensus       640 M~lR~f~h~l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGAGTnN  708 (878)
T KOG2005|consen  640 MVLRHFGHLLHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGTNN  708 (878)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccCCcch
Confidence            455566666666778888888888877763222    236778888999999999999999999988764443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=94.47  E-value=2.6  Score=35.54  Aligned_cols=140  Identities=15%  Similarity=0.120  Sum_probs=81.8

Q ss_pred             HHHHHHHHhccch----hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHH-HHHHHHHhccccChhhh
Q 016814          232 LGALCMQWLQDKV----YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMT-ILRAISLLAPVMGSEIT  306 (382)
Q Consensus       232 l~~~l~~~l~d~~----~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~-a~~~l~~l~~~~~~~~~  306 (382)
                      .+|.+...+.+++    ...-...+..++.+++..|.+....     ++..+....++.+.. ....+..+.+.+.++ +
T Consensus       112 ~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~-----il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~-~  185 (262)
T PF14225_consen  112 LLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLAR-----ILSSYAKGRFRDKDDFLSQVVSYLREAFFPD-H  185 (262)
T ss_pred             HHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHH-----HHHHHHhcCCCCHHHHHHHHHHHHHHHhCch-h
Confidence            4566666666555    1333455688888887655443322     222222222222222 223333344445443 4


Q ss_pred             hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ...++-.++.++..+.+.+|..+++.|..+.+..+.+ .....++..+.+++..+-+   ..|.+.+..+...-|
T Consensus       186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~  257 (262)
T PF14225_consen  186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG  257 (262)
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence            4567778889998888999999999999999876532 1334566667777765444   356666666665544

>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=94.46  E-value=5.3  Score=39.06  Aligned_cols=327  Identities=11%  Similarity=0.054  Sum_probs=168.9

Q ss_pred             hHHHHH-HHHHHHHHHhccChhhhhhhhhhhhhhhc-----cCCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHh
Q 016814           11 DSVRLL-AVEGCAALGKLLEPQDCVAHILPVIVNFS-----QDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRL   83 (382)
Q Consensus        11 ~~vR~~-a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-----~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~   83 (382)
                      ..-|.. .+-.+..++.+.+..+  +.-+|.+.+.+     +-.++..-..+...+|.++..+++... .+..+|.+++.
T Consensus       480 s~~~tEaci~~~~sva~~~~~t~--~~~i~rl~~~~asik~S~~n~ql~~Tss~~igs~s~~l~e~P~~ln~sl~~L~~~  557 (982)
T KOG2022|consen  480 SLNRTEACIFQFQSVAEYLGETE--STWIPRLFETSASIKLSAPNPQLLSTSSDLIGSLSNWLGEHPMYLNPSLPLLFQG  557 (982)
T ss_pred             HHHHHHHHHHHHHHHHhhcCcch--hHHHHHHHHhccccccccCChhHHHHHHHHHHHHHHHHhcCCcccCchHHHHHHH
Confidence            334444 5566777888776532  22345544433     234788889999999999999988654 35689999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCC--CchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  159 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d--~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  159 (382)
                      +..++..+  .+...+.++++.+..+  .+...++....+.+..  ..+.+|....+++|.+.+...++...+++..++.
T Consensus       558 Lh~sk~s~--q~i~tl~tlC~~C~~~L~py~d~~~a~~~e~l~~~~~~~S~~~klm~sIGyvls~~~pEe~~kyl~~lin  635 (982)
T KOG2022|consen  558 LHNSKESE--QAISTLKTLCETCPESLDPYADQFSAVCYEVLNKSNAKDSDRLKLMKSIGYVLSRLKPEEIPKYLMKLIN  635 (982)
T ss_pred             hcCchHHH--HHHHHHHHHHHhhhhhCchHHHHHHHHHHHHhcccccCchHHHHHHHHHHHHHHhccHHhHHHHHHHHHH
Confidence            87544433  3556688898887654  3344555555555433  3457889999999999888776554444443333


Q ss_pred             Hhh-------cC--CChHHHHHHHH---hhHHhhhhhc-h---------------------hhHhhhHHHHHHHHhc--C
Q 016814          160 SLL-------KD--EFPDVRLNIIS---KLDQVNQVIG-I---------------------DLLSQSLLPAIVELAE--D  203 (382)
Q Consensus       160 ~~l-------~d--~~~~vr~~~~~---~l~~~~~~~~-~---------------------~~~~~~llp~l~~~~~--d  203 (382)
                      .++       ..  +.++-+...+-   .+..+...+. +                     -.+...++|.+.+.+.  -
T Consensus       636 ~il~qle~~l~~~i~~~e~~l~~~~~l~~iS~LftSL~~~~~~~d~d~~~~~~~~~qq~~il~v~~k~i~~~~kv~s~~~  715 (982)
T KOG2022|consen  636 PILSQLEINLAPGIDDQENHLRIAFQLNTISALFTSLINKKDIIDTDQPEQREEPFQQFPILQVLQKAIPVFEKVLSMWL  715 (982)
T ss_pred             HHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHhccCCCCccccccchhhhccccccCCHHHHHHHHHHHHHHHHHHHh
Confidence            222       11  12222222221   2222322211 0                     0122455666655542  1


Q ss_pred             CCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH--hCh---HHHHhhhHHHH
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE--FGP---EWAMQHITPQV  275 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~--~~~---~~~~~~l~~~l  275 (382)
                      .+..+-..++..+..=....++.   ...+.+.+.+......+....-.-...++......  +++   ..+. ..+...
T Consensus       716 ~~s~vve~~C~i~~~~v~~~~~sF~~p~l~~l~~Fi~r~~~~~~a~tl~l~~~~l~~~~~~~~~~~lv~~~~~-~~~q~s  794 (982)
T KOG2022|consen  716 GLSDVVEASCIIMVKGVRSLLTSFPEPMLPSLCPFIVRFLTSCLAVTLSLIAACLLAKSTVEQCKPLVGQDMA-NAFQQS  794 (982)
T ss_pred             cchhHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhccchHHHHHHHHHHHHHhhhccccccccHHHHHH-HHHHHH
Confidence            12223233332222212222333   22345555555533332211111111111111100  111   0011 111122


Q ss_pred             Hhhhc----CcchHHHHHHHHHHHHhccccCh------hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          276 LEMIN----NPHYLYRMTILRAISLLAPVMGS------EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       276 ~~~l~----~~~~~~r~~a~~~l~~l~~~~~~------~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      +..+.    .+++.+-.....++.++.+..+.      ..+..-++|..+..++.+.+-.-.++++.+..+...-++
T Consensus       795 l~lf~~~~f~n~~Di~~~~~~~v~~ilkk~P~~~~~~~~~~ts~i~~~a~~ll~~pE~~~i~aa~qF~t~~~~~~~s  871 (982)
T KOG2022|consen  795 LLLFEQHPFSNQPDIYLQLIGFVRQILKKIPKFLEPSMLAFTSLILICAFILLNSPEPTTIRAASQFLTALATYATS  871 (982)
T ss_pred             HHHHhccCCCCCchHHHHHHHHHHHHHHhCcCccccchHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHhhccc
Confidence            22222    23455666666677666554331      135566777888899998888777888888887765443

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=94.42  E-value=10  Score=42.18  Aligned_cols=177  Identities=20%  Similarity=0.247  Sum_probs=101.1

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccCh--------hhhhhhhhhhhhhh-ccCCCHHHHHHHHHHHHHHHHHhCCcccc
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEP--------QDCVAHILPVIVNF-SQDKSWRVRYMVANQLYELCEAVGPEPTR   73 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--------~~~~~~ll~~l~~~-~~d~~~~vR~~a~~~l~~l~~~~~~~~~~   73 (382)
                      +..+..+++.+|..++..+..+.+....        -.....++..+..+ ..|.++.+|......+.   +.+......
T Consensus       487 ~~~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ  563 (2341)
T KOG0891|consen  487 DSYLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQ  563 (2341)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcC
Confidence            3456778899999998888877775533        12244444444443 36888888888777766   112111222


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHH-----hhC------------------------------------HH---
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCR-----ILN------------------------------------PE---  109 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~-----~~~------------------------------------~~---  109 (382)
                      ...+-..+..+.|..-.++.++...++.++.     .++                                    +.   
T Consensus       564 ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~~i~  643 (2341)
T KOG0891|consen  564 PDLLRLLFIALHDENFAIQELATVIIGRLSSYNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPVLIS  643 (2341)
T ss_pred             chhHHHHHHHhhhhhhhhHHhHHhhccccccccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHHHHH
Confidence            3344444555555555555555555553332     100                                    00   


Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhcCC-ChHHHHHHHHhhHHhhh
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDE-FPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~-~~~vr~~~~~~l~~~~~  182 (382)
                      .+...++-.+...+.|.+..+-.++..+++.++...|.+.  ..+.+++.+.+.+.|. +..-|.++.+.++.+.+
T Consensus       644 ~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s  719 (2341)
T KOG0891|consen  644 PYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLES  719 (2341)
T ss_pred             hhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhc
Confidence            1112233333445678888889999999999998877332  2245666666666553 34555566666666543

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.32  E-value=0.56  Score=33.79  Aligned_cols=68  Identities=15%  Similarity=0.154  Sum_probs=48.2

Q ss_pred             HHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHH-H--HhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814          231 KLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEW-A--MQHITPQVLEMINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       231 ~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~-~--~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      +++..+..++ .+.++.+...|+.-+|.+++.++... +  .-..-..+++++.+++..+|..|+.+++.+.
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4666677777 44577788889999999998874321 1  1234567788889999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=94.23  E-value=1.7  Score=32.55  Aligned_cols=97  Identities=11%  Similarity=0.166  Sum_probs=69.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~  120 (382)
                      ..++||..=...|..+..     .+ ......+..+.+.+++.++.|...|+..|..+.+.+|...    ....++..+.
T Consensus        14 l~~~dw~~ileicD~In~-----~~-~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~   87 (139)
T cd03567          14 NREEDWEAIQAFCEQINK-----EP-EGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELI   87 (139)
T ss_pred             CCCCCHHHHHHHHHHHHc-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHH
Confidence            346677766666666542     11 1223567778888899999999999999999999998762    2345566666


Q ss_pred             hhcCC------CchHHHHHHHHHHHhhccccCh
Q 016814          121 ELSSD------SSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       121 ~~~~d------~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      +++..      .+..|+..++..+..+...++.
T Consensus        88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (139)
T cd03567          88 KLVSPKYLGSRTSEKVKTKIIELLYSWTLELPH  120 (139)
T ss_pred             HHhccccCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            66643      5678999999999998876653

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=94.07  E-value=1.3  Score=32.99  Aligned_cols=97  Identities=12%  Similarity=0.160  Sum_probs=67.8

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~l~  120 (382)
                      ..++||..=...|..+..     + .......+..+.+-++++++.+...|+..+..+.+.+|...    ....++..+.
T Consensus        13 l~~~dw~~~l~icD~i~~-----~-~~~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~   86 (133)
T smart00288       13 LLEEDWELILEICDLINS-----T-PDGPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELV   86 (133)
T ss_pred             CCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHH
Confidence            346666665555555431     1 22224577888888889999999999999999999988763    2345677777


Q ss_pred             hhcCCCch--HHHHHHHHHHHhhccccCh
Q 016814          121 ELSSDSSQ--HVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       121 ~~~~d~~~--~vr~~a~~~l~~l~~~~~~  147 (382)
                      .++.++..  .||..+...+..+...+..
T Consensus        87 ~l~~~~~~~~~Vk~kil~li~~W~~~f~~  115 (133)
T smart00288       87 KLIKPKYPLPLVKKRILELIQEWADAFKN  115 (133)
T ss_pred             HHHcCCCCcHHHHHHHHHHHHHHHHHHcC
Confidence            77766443  3899999988888876653

Unpublished observations. Domain of unknown function.

>KOG2021 consensus Nuclear mRNA export factor receptor LOS1/Exportin-t (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport; Translation, ribosomal structure and biogenesis]

Probab=94.00  E-value=6.1  Score=38.01  Aligned_cols=286  Identities=10%  Similarity=0.093  Sum_probs=157.0

Q ss_pred             cHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcc-ccChHhHHHhhHHHHHH-----
Q 016814           88 EAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKELSSDSSQHVRSALASVIMGMAP-LLGKDATIEQLLPIFLS-----  160 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~-~~~~~~~~~~l~~~l~~-----  160 (382)
                      ++.+-..++++++++...++-.. ..+.+++.+.+.+.  ...+|.+|+.++-.+.. .+.+... -.++..+..     
T Consensus       206 npgl~~~cLdc~g~fVSWIdInLIaNd~f~nLLy~fl~--ieelR~aac~cilaiVsKkMkP~dK-L~lln~L~q~l~lf  282 (980)
T KOG2021|consen  206 NPGLINSCLDCIGSFVSWIDINLIANDYFLNLLYKFLN--IEELRIAACNCILAIVSKKMKPMDK-LALLNMLNQTLELF  282 (980)
T ss_pred             CchHHHHHHHHHHHHhhhhhhhhhhchhHHHHHHHHHh--HHHHHHHHHHHHHHHHhcCCChhHH-HHHHHHHHHHHHHH
Confidence            78888889999999988877663 34567888888776  67899999999887763 3333221 122333321     


Q ss_pred             --hhcC--CChHHHHHHHHhhHHhh-------hhh----ch---h---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814          161 --LLKD--EFPDVRLNIISKLDQVN-------QVI----GI---D---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  219 (382)
Q Consensus       161 --~l~d--~~~~vr~~~~~~l~~~~-------~~~----~~---~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  219 (382)
                        ...|  .++++-....+-+...+       +.+    .+   +   .....++|.+.+.+.++...+-..+...+...
T Consensus       283 g~~s~dq~~d~df~e~vskLitg~gvel~~i~s~lnseld~~~kqn~l~~ll~~vpyllq~l~~e~ddit~~ifpFlsdy  362 (980)
T KOG2021|consen  283 GYHSADQMDDLDFWESVSKLITGFGVELTIIISQLNSELDTLYKQNVLSILLEIVPYLLQFLNNEFDDITAKIFPFLSDY  362 (980)
T ss_pred             hhhccccccCchHHHHHHHHHhhcceeeehhHhhhhhccCHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHH
Confidence              1222  34444443333332221       111    00   0   11124677788888877776666666655544


Q ss_pred             Hhhhch------h---hhHHHHHHHHHHHhcc------ch----------hHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814          220 ASQLGV------G---FFDDKLGALCMQWLQD------KV----------YSIRDAAANNLKRLAEEFGPEWAMQHITPQ  274 (382)
Q Consensus       220 ~~~~~~------~---~~~~~l~~~l~~~l~d------~~----------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  274 (382)
                      ...+..      .   .....+...+.++.-|      .+          .++|+..-.....+. ...++.+...+-..
T Consensus       363 l~~LKkl~~ls~~qk~~l~~illai~kqicydemy~nddn~tg~EeEa~f~e~RkkLk~fqdti~-~idpsl~l~~Ir~s  441 (980)
T KOG2021|consen  363 LAFLKKLKALSSPQKVPLHKILLAIFKQICYDEMYFNDDNVTGDEEEAFFEEVRKKLKNFQDTIV-VIDPSLFLNNIRQS  441 (980)
T ss_pred             HHHHhhcccccchhhccHHHHHHHHHHHHhccHHhhcccCCCCchHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHH
Confidence            333221      1   1112222333333211      11          246665443333333 34555444434333


Q ss_pred             HHhhh---cCcchHHHHHHHHHHHHhccccChhh------------hhhhhHHHHH--hhccCCCccHHHHHHHHHHHHh
Q 016814          275 VLEMI---NNPHYLYRMTILRAISLLAPVMGSEI------------TCSRLLPVVI--NASKDRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       275 l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~------------~~~~~l~~l~--~~l~d~~~~vR~~a~~~l~~i~  337 (382)
                      +...+   ...+|..-+.|++.+=.+++.+..+.            ....+++.+.  +.+..+++.|..--.+.+..-.
T Consensus       442 lS~al~ns~e~swqevE~Aiylly~lgE~l~~~~~~~nsgd~s~~~vl~~~~~ll~tsqv~~h~h~lVqLlfmE~ivRY~  521 (980)
T KOG2021|consen  442 LSAALMNSKEESWQEVELAIYLLYNLGECLKNNYFGLNSGDISTSQVLFLNELLLMTSQVLAHDHELVQLLFMELIVRYN  521 (980)
T ss_pred             HHHHHhcCCcchHHHHHHHHHHHHHHhhccccccccccCccccHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHH
Confidence            43333   34579999999999988887665431            1223333333  2455666667666666665533


Q ss_pred             hhhhHHHHHHhHHHHHHHhc------CCCCccHHhHHHHHHHHHHHHhc
Q 016814          338 PIVDQSMVEKTIRPCLVELT------EDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       338 ~~~~~~~~~~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .-+.   ..++-.|.+....      +..+..||..|...+.++.+.+.
T Consensus       522 kff~---~esq~ip~vL~aFld~rglhn~ne~Vr~RawYLF~RfVKlLk  567 (980)
T KOG2021|consen  522 KFFS---TESQKIPLVLNAFLDSRGLHNKNENVRLRAWYLFTRFVKLLK  567 (980)
T ss_pred             HHHh---cchhhhHHHHHHHccchhccccccccchHHHHHHHHHHHHHH
Confidence            3232   2244566666643      34678899999999988887654

>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus

Probab=93.99  E-value=2.6  Score=33.62  Aligned_cols=68  Identities=18%  Similarity=0.273  Sum_probs=57.2

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh--hCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI--LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  145 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~--~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  145 (382)
                      +..++.+.+++-+++..||..|++.+..+.+.  ..|.    ..+|.+..+..|+++.+|..|...+..+.+..
T Consensus         7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~   76 (187)
T PF12830_consen    7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH   76 (187)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence            44678888888999999999999999998774  2343    57899999999999999999999988887543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.89  E-value=0.88  Score=35.04  Aligned_cols=131  Identities=16%  Similarity=0.174  Sum_probs=78.7

Q ss_pred             cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc---Chh-hhhhhhHHHHHhh
Q 016814          242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM---GSE-ITCSRLLPVVINA  317 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~---~~~-~~~~~~l~~l~~~  317 (382)
                      ....++|..+.-.+.++.+.. ++.+.+.+-..+...+.+....-...+..++..+-+..   +.+ ...+.+++.+...
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~~-~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDAA-REEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            356778888888888886433 33455556666666665555555556666666654332   222 2245666777766


Q ss_pred             cc--CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcC-CCCcc-HHhHHHHHHH
Q 016814          318 SK--DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTE-DPDVD-VRFFATQAIQ  373 (382)
Q Consensus       318 l~--d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~-d~~~~-vr~~a~~al~  373 (382)
                      ..  .++..+...+++.+..-+..-.. ..+.....+.|.+..+ +++.. +|..|+-++.
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            66  55667888888877654432222 2456788888888774 45454 6776665553

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=93.86  E-value=0.59  Score=33.97  Aligned_cols=69  Identities=10%  Similarity=0.199  Sum_probs=46.3

Q ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814           39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  109 (382)
Q Consensus        39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  109 (382)
                      +++.+...|.++-.--....-|.++...  ......+++..+.+-+++.++.|+..++..|..++...+++
T Consensus         4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~--s~~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~   72 (122)
T cd03572           4 SLLSKATSDDDEPTPGYLYEEIAKLTRK--SVGSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSD   72 (122)
T ss_pred             HHHHHHhcCCCCCCchHHHHHHHHHHHc--CHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHH
Confidence            4455566655554444444444444433  11223578999999999999999999999999998876644

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF05536 Neurochondrin: Neurochondrin

Probab=93.79  E-value=6.2  Score=37.39  Aligned_cols=175  Identities=21%  Similarity=0.256  Sum_probs=117.8

Q ss_pred             HHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCch-HHHHHHHHHHHhhcccc-ChHhH-HHhhHHHHHHh
Q 016814           89 AEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQ-HVRSALASVIMGMAPLL-GKDAT-IEQLLPIFLSL  161 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~-~vr~~a~~~l~~l~~~~-~~~~~-~~~l~~~l~~~  161 (382)
                      ...+.-|+..|..|+.  .++    .-.-.-+|.+.+.+...+. .+-.-+..+|..++..- |.+.. ...-++.+.+.
T Consensus        71 ~~~~~LavsvL~~f~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei  148 (543)
T PF05536_consen   71 EEYLSLAVSVLAAFCR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEI  148 (543)
T ss_pred             HHHHHHHHHHHHHHcC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHH
Confidence            4567777777777765  222    1122457999998877666 88888888888887432 33322 24566777777


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhH------hhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--------hhh
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLL------SQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--------VGF  227 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~------~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--------~~~  227 (382)
                      +.+ .+.....++..+..+....+.+.+      ...+++.+...........+..++..++.+....+        ...
T Consensus       149 ~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~  227 (543)
T PF05536_consen  149 IPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPK  227 (543)
T ss_pred             HHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhh
Confidence            666 666677777777776665553322      23566667666666666777888888888776553        122


Q ss_pred             hHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH
Q 016814          228 FDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       228 ~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      +.+.+...+...+++ ..++-|..++...+.+.+.+|.++
T Consensus       228 W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~w  267 (543)
T PF05536_consen  228 WLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEW  267 (543)
T ss_pred             hHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHh
Confidence            445667777777765 467889999999999999998765

>COG5234 CIN1 Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones / Cytoskeleton]

Probab=93.72  E-value=3.5  Score=39.15  Aligned_cols=321  Identities=14%  Similarity=0.040  Sum_probs=152.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHH---HH
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPE---LA  111 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll~~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~---~~  111 (382)
                      ..+....|+..++++..++..+-+...       ...++..+++.+    ++.+..+|-.+++.++++++.++..   .+
T Consensus       206 g~e~s~L~~~l~~~lS~lGi~llP~~~pi~sN~~sh~~l~~iV~f~~~s~Ss~~~~~rf~~a~~~aki~srl~w~l~~sf  285 (993)
T COG5234         206 GQENSALRKLLCKCLSRLGIVLLPVNLPIDSNEESHIYLEVIVDFLLSSVSSIDSFVRFSAAKGLAKIISRLPWNLAESF  285 (993)
T ss_pred             cccHHHHHHHHHHHhhhcCceecccccCcccCcchhHHHHHHHHHHHcCcccccHHHHHHHHhhHHHHHhhcccccHHHH
Confidence            455667888899999888766544111       122455555544    5556789999999999999887643   22


Q ss_pred             HH---h-----hhHhhhhhc--CCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC--------hHHHHHH
Q 016814          112 IQ---H-----ILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF--------PDVRLNI  173 (382)
Q Consensus       112 ~~---~-----il~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~--------~~vr~~~  173 (382)
                      .+   .     ++..+.+-+  -+.++.+-..++..++ ++...+-+...-.+.|++.+.++-+.        ..+|..+
T Consensus       286 i~ii~~~~en~~~s~l~~~cdii~tnel~w~~~i~~~a-la~~~~id~~d~~i~~iI~kg~~y~~~~~~~v~g~~IRdss  364 (993)
T COG5234         286 IDIIELMTENMFLSPLENTCDIIITNELVWHGAILFFA-LAGAGLIDYSDCLILPIIEKGLSYEVRYGTRVTGQSIRDSS  364 (993)
T ss_pred             HHHHHhcccccchhhhhCccceeecchHHHHHHHHHHH-Hhhccccchhhhhhhhheccccceeehheeeeccceeeccc
Confidence            21   1     222222222  2345544444444333 44433322222235566666654322        2455555


Q ss_pred             HHhhHHhhhhhch---hhHhhhHHHHHHH-HhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHH
Q 016814          174 ISKLDQVNQVIGI---DLLSQSLLPAIVE-LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRD  249 (382)
Q Consensus       174 ~~~l~~~~~~~~~---~~~~~~llp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~  249 (382)
                      .-.+-.+....+.   +.+...+...+.+ .+-|+.-.+|+++..++-+....-.+......++..+ ++ .| .++   
T Consensus       365 ~f~vWs~~r~~S~s~~~~lqt~L~hll~~~alFDpel~vRr~a~Aal~E~iGR~~s~a~g~~lIslI-N~-~s-v~r---  438 (993)
T COG5234         365 CFFVWSFYRCYSKSAIEGLQTNLIHLLLQTALFDPELNVRRAATAALFEVIGRHASIADGLSLISLI-NY-VS-VTR---  438 (993)
T ss_pred             ceeeeeeeeccccccchhHHHHHHHHHHhhhhcCchhhhhhHHHHHHHHHhccCCCcccchhhhhhc-cc-ee-cch---
Confidence            4444333332211   1121223333443 5678888999998888776654422222233333333 10 01 011   


Q ss_pred             HHHHHHHHHHHHhChH-H--HHhhhH-HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccH
Q 016814          250 AAANNLKRLAEEFGPE-W--AMQHIT-PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI  325 (382)
Q Consensus       250 ~a~~~l~~~~~~~~~~-~--~~~~l~-~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~v  325 (382)
                       --++-+.+...+.++ .  ..++++ +.+++.+.+-+..++.....++..+.+.-..   .+..+|.++..+.+....-
T Consensus       439 -~s~csg~~~r~~~~~~k~~~CedVF~diLl~Nl~H~~~~~k~~~~y~l~~liK~~~~---~p~yl~~Il~k~~sdfi~~  514 (993)
T COG5234         439 -ISNCSGDLCRKVAHFPKFRSCEDVFQDILLTNLQHWDVKVKQLSAYSLRQLIKYPKE---LPIYLPPILDKLSSDFIFG  514 (993)
T ss_pred             -hhhcchHHHHHhcCccccchHHHHHHHHHHhhhhccchhhhhhccccHHHHhcCccc---CchhhhHHhhhCchhhhcc
Confidence             112222222222111 0  111222 2255555566667888888888888543211   2223333333333211110


Q ss_pred             HHHHHHHHHHHhhhhhHH------------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          326 KFNVAKVLQSLIPIVDQS------------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       326 R~~a~~~l~~i~~~~~~~------------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      -......++.+.-.++.+            .+.-.+.+.+.....|..+--|..+..++.++..
T Consensus       515 ~~il~~~~k~F~~~~~~~rihei~~~i~q~kIkl~i~~~~~r~f~d~~~~f~~F~~~~~~vi~g  578 (993)
T COG5234         515 YTILASIIKGFLFPFDINRIHEILSHIQQTKIKLGILKGIQRIFADDIRVFRAFFSEAFSVIIG  578 (993)
T ss_pred             hhhHHHHHHHhcCccCCccHHHHHHHHHHhheeecCChHHHHHhcccchHHHHHHHHHHHHHhh
Confidence            000111112221111111            1122455666666677666667777777776643

>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=93.72  E-value=3.8  Score=34.66  Aligned_cols=53  Identities=23%  Similarity=0.354  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCc--chHHHHHHHHHHHHhc
Q 016814          246 SIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNP--HYLYRMTILRAISLLA  298 (382)
Q Consensus       246 ~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~--~~~~r~~a~~~l~~l~  298 (382)
                      .+|.-|+..++-+++.++...  ....+...+...+-|.  .+.....|+.+++.+.
T Consensus       302 alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~~sT~YGalkgls~l~  358 (450)
T COG5095         302 ALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKTESTQYGALKGLSILS  358 (450)
T ss_pred             HHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccccchhhhhhhhhhhhc
Confidence            578888888888887776543  2233333344333332  2445556666666554

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=93.70  E-value=0.73  Score=34.73  Aligned_cols=74  Identities=11%  Similarity=0.164  Sum_probs=51.5

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh----hhhhHHHHHhhccCCCc-c---HHHHHHHHHHHHhhhh
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVP-N---IKFNVAKVLQSLIPIV  340 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~-~---vR~~a~~~l~~i~~~~  340 (382)
                      ...+..+...+.++++.+...|+..+..+.+++|..+.    ...++..+.+.+.++.. .   ||..++..+..+...+
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            44666777778888888888888888888888876522    23466666665543322 2   7888888888888777


Q ss_pred             hH
Q 016814          341 DQ  342 (382)
Q Consensus       341 ~~  342 (382)
                      +.
T Consensus       121 ~~  122 (140)
T PF00790_consen  121 KS  122 (140)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]

Probab=93.61  E-value=4.9  Score=44.49  Aligned_cols=247  Identities=15%  Similarity=0.173  Sum_probs=139.5

Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCH------H--HHHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNP------E--LAIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~------~--~~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      .+...+.++|..+..++..+......      -  .....++..+.. ...|.++.+|......+.   ..+.+....+.
T Consensus       489 ~~~~~~~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~---~~~~~~laQ~~  565 (2341)
T KOG0891|consen  489 YLEADDSEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN---ERFDAQLAQPD  565 (2341)
T ss_pred             HHhcccHHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc---cchhhhhcCch
Confidence            44556678888876555554433221      0  112223333333 346777777777766655   22333333345


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH----hc----CCCchHHHHHHHHhHHHHhhh--
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL----AE----DRHWRVRLAIIEYIPLLASQL--  223 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~----~~----d~~~~vr~~~~~~l~~l~~~~--  223 (382)
                      .+......+.|+.-..+..+...++.++..-+     ..++|.+...    .+    +...++.......+..+....  
T Consensus       566 ~lr~~~~al~~~~l~~~~~~~~~ig~l~~~~~-----a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~~~~i~~~~~  640 (2341)
T KOG0891|consen  566 LLRLLFIALHDENFAIQELATVIIGRLSSYNP-----AYVLPSLRKTLLELLTELEFSGMARTKEESAKLLCELIISSPV  640 (2341)
T ss_pred             hHHHHHHHhhhhhhhhHHhHHhhccccccccH-----HHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHhhHHHHHHHH
Confidence            55556666777777778777777776654322     2344444332    11    111223333333333322211  


Q ss_pred             chhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccc
Q 016814          224 GVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPV  300 (382)
Q Consensus       224 ~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~  300 (382)
                      ....+...++-.+...+.|++..+-.++..+++.++...|.  ..+.+..++.+.+.+.+.+ ..-|.++..+++.+...
T Consensus       641 ~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~~s~~~rr~aslk~l~~l~s~  720 (2341)
T KOG0891|consen  641 LISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQDQSSLGKRLAALKALGQLESS  720 (2341)
T ss_pred             HHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHHhhhhhchhHHHHHhhhhhcc
Confidence            12222234455566678888889999999999999988773  2334467777777777654 66788889999998755


Q ss_pred             cCh----hhhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHh
Q 016814          301 MGS----EITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLI  337 (382)
Q Consensus       301 ~~~----~~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~  337 (382)
                      -|.    ..-.+.++..+...++.. ...+|..+++.++..+
T Consensus       721 ~~~~v~p~~~~P~ll~~l~~~~~te~~~~ir~~~v~~~g~~g  762 (2341)
T KOG0891|consen  721 TGYVVDPYLDYPELLDILINILKTEQSSTIRREAIRLLGLLG  762 (2341)
T ss_pred             cceEecccccChHHHHHHHHHHhHhhhhHHHHHHHHHhhhhc
Confidence            442    122345555555544433 4558888888877443

>KOG4524 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.57  E-value=8.4  Score=38.19  Aligned_cols=93  Identities=16%  Similarity=0.119  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---H--HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---W--AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-  303 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~--~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-  303 (382)
                      .+++.....++.+++..+|-.++..+..-...+...   .  ...+..|.+++.+.++++-+-..|+.++..++...|. 
T Consensus       802 ~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDF  881 (1014)
T KOG4524|consen  802 LKILGRGIHLLSHESLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDF  881 (1014)
T ss_pred             HHHHHHHHHHhcchhHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhH
Confidence            456666778899999999999999987765544321   1  2345677788899999999999999999999987773 


Q ss_pred             --hhhhhhhHHHHHhhccCCC
Q 016814          304 --EITCSRLLPVVINASKDRV  322 (382)
Q Consensus       304 --~~~~~~~l~~l~~~l~d~~  322 (382)
                        +-+.+.++|-+-.++.|..
T Consensus       882 v~sR~l~dvlP~l~~~~~~~~  902 (1014)
T KOG4524|consen  882 VASRFLEDVLPWLKHLCQDSF  902 (1014)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence              3567788888877776644

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.56  E-value=11  Score=39.44  Aligned_cols=237  Identities=13%  Similarity=0.149  Sum_probs=138.2

Q ss_pred             hhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchH----HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhh
Q 016814           42 VNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV----PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHI  115 (382)
Q Consensus        42 ~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll----~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~i  115 (382)
                      .+-+.-.|+..|.-|...+..+......+.... ++    -.+.++..|++.+||....+.+..+...+.+.  .+...+
T Consensus        47 ~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~-il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~l  125 (1312)
T KOG0803|consen   47 VKKLLKRDETTKIKALQELSELIDTSDTEELKG-ILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKSL  125 (1312)
T ss_pred             HHHHhccChHHHHHHHHhHHHhcccccchHHhh-hHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHhh
Confidence            333445566888888888888887665554333 33    33456778999999999999999988877665  556677


Q ss_pred             hHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChHh---HHHhhHHHHHHhh--------cC-----------CChHHHHH
Q 016814          116 LPCVKELSSDSSQHVRSALASVIMGMAPLL-GKDA---TIEQLLPIFLSLL--------KD-----------EFPDVRLN  172 (382)
Q Consensus       116 l~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~~---~~~~l~~~l~~~l--------~d-----------~~~~vr~~  172 (382)
                      +|.+.-...|....|-.+|...+......- .++.   ..+.+.++..+.+        .|           ....|-..
T Consensus       126 i~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rvi~s  205 (1312)
T KOG0803|consen  126 IPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRVISS  205 (1312)
T ss_pred             hhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHHHHH
Confidence            888877778888888777777666543311 0111   1244555555442        11           11123333


Q ss_pred             HHHhhHHhhhhhchhhHhh-------hH--HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh---hHHHHHHHHHHHh
Q 016814          173 IISKLDQVNQVIGIDLLSQ-------SL--LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWL  240 (382)
Q Consensus       173 ~~~~l~~~~~~~~~~~~~~-------~l--lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l  240 (382)
                      ++..+..+....|.+.-..       .+  -..+..+++++++.+|.+..+.+..+.+.+....   -..++.|.+....
T Consensus       206 sLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~~~~~~~~~l~~~~~~~~  285 (1312)
T KOG0803|consen  206 SLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNRVMESEKNYLKPVLLGSI  285 (1312)
T ss_pred             HHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHhcchhhhhHhhHHHHccc
Confidence            4444444443333321111       11  2335566789999999999999888877654431   1245666666666


Q ss_pred             ccchhHHHHHHHHHHHHHHHHhChHH------HHhhhHHHHHhhhc
Q 016814          241 QDKVYSIRDAAANNLKRLAEEFGPEW------AMQHITPQVLEMIN  280 (382)
Q Consensus       241 ~d~~~~vr~~a~~~l~~~~~~~~~~~------~~~~l~~~l~~~l~  280 (382)
                      .+.+ -|-......+-...+.+..++      ....++|.+.+.+.
T Consensus       286 ~~~d-~~c~~~we~Vl~~~~~~p~~~~~~~~~~~k~il~~l~~~ir  330 (1312)
T KOG0803|consen  286 DSLD-HVCSSMWEKVLLNLSSLPDEWLHLNSLLKKGILPLLSNLIR  330 (1312)
T ss_pred             cccc-cccHHHHHHHHHHhhhhhHHHhcccchhccchhHHHHHHHh
Confidence            5555 333333333333334444333      23456666666555

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=93.54  E-value=9.3  Score=38.57  Aligned_cols=148  Identities=14%  Similarity=0.182  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHhccCh----hhhhhh---hhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC
Q 016814           16 LAVEGCAALGKLLEP----QDCVAH---ILPVIVNFS-QDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR   85 (382)
Q Consensus        16 ~a~~~l~~l~~~~~~----~~~~~~---ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~   85 (382)
                      .++.++..+.+..+.    -..+..   ..+++..++ ...++.+.+.+.+.+..+...-+-  +......+..++.++.
T Consensus      1744 m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLH 1823 (2235)
T KOG1789|consen 1744 MTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATCNVLTTLLTLLH 1823 (2235)
T ss_pred             HHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHh
Confidence            466677776665542    011222   334444444 466778999999888766543221  1222346777777776


Q ss_pred             CCcHHHHHHHHHHHHHHHHh--hCHHHHHH-hhhHhhhhhcCCCchHHHHHHHHHHHhhc--cccChHhH---HHhhHHH
Q 016814           86 DNEAEVRIAAAGKVTKFCRI--LNPELAIQ-HILPCVKELSSDSSQHVRSALASVIMGMA--PLLGKDAT---IEQLLPI  157 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~--~~~~~~~~-~il~~l~~~~~d~~~~vr~~a~~~l~~l~--~~~~~~~~---~~~l~~~  157 (382)
                      + -|..|+.++..|..+...  +..+...+ .++..+.-++...++.+|..+++.++.+.  +..|+...   ...+-..
T Consensus      1824 S-~PS~R~~vL~vLYAL~S~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~ 1902 (2235)
T KOG1789|consen 1824 S-QPSMRARVLDVLYALSSNGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEI 1902 (2235)
T ss_pred             c-ChHHHHHHHHHHHHHhcCcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHH
Confidence            4 588899999999888653  23333322 23333444667788999999999999885  34455432   2233344


Q ss_pred             HHHhhcC
Q 016814          158 FLSLLKD  164 (382)
Q Consensus       158 l~~~l~d  164 (382)
                      +...+.|
T Consensus      1903 f~d~~RD 1909 (2235)
T KOG1789|consen 1903 FADSLRD 1909 (2235)
T ss_pred             HHHHHhc
Confidence            4555555

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=93.50  E-value=0.15  Score=28.92  Aligned_cols=30  Identities=30%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             HhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          347 KTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       347 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ...+|.|.+++++++.+|+..|+.|++.++
T Consensus        11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen   11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            456666666666667777777777666654

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=93.46  E-value=5.3  Score=35.55  Aligned_cols=69  Identities=20%  Similarity=0.245  Sum_probs=49.5

Q ss_pred             hhHHHHHhhccCCC-ccHHHHHHHHHHHHhhhhhHH--HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          309 RLLPVVINASKDRV-PNIKFNVAKVLQSLIPIVDQS--MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       309 ~~l~~l~~~l~d~~-~~vR~~a~~~l~~i~~~~~~~--~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +++..++.++...+ |.+=..|+.=++....+++..  ... -.....+-.+++.+|++||.+|..|++.+..
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            56667777776655 667777888888888776532  111 2344556678899999999999999988754

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.40  E-value=0.27  Score=35.35  Aligned_cols=67  Identities=12%  Similarity=0.101  Sum_probs=36.3

Q ss_pred             hhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh--H-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhh
Q 016814          115 ILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA--T-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVN  181 (382)
Q Consensus       115 il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~  181 (382)
                      ++..|.+++ .+.++.+-..||.=++.++...+...  . .-.....+.+++++++++||..|+.++..+.
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            334444444 23345555566666666665554221  1 1234466667777777777777777776654

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion

Probab=93.39  E-value=0.13  Score=29.39  Aligned_cols=40  Identities=15%  Similarity=0.021  Sum_probs=28.7

Q ss_pred             HHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHH
Q 016814           21 CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL   60 (382)
Q Consensus        21 l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l   60 (382)
                      ++.++..-+.-...+.+...+.+.+.|+++.||+++++.+
T Consensus         3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll   42 (42)
T PF12765_consen    3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL   42 (42)
T ss_pred             HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence            4455554433333457888889999999999999998753

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=93.34  E-value=7.3  Score=36.78  Aligned_cols=82  Identities=17%  Similarity=0.238  Sum_probs=50.4

Q ss_pred             hhhchhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHh----hhcCcchHHHHHHHHHHH
Q 016814          221 SQLGVGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE----MINNPHYLYRMTILRAIS  295 (382)
Q Consensus       221 ~~~~~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~----~l~~~~~~~r~~a~~~l~  295 (382)
                      +.+.++.+. +++-.+...+ ..+...+|-+.++.++.+.+..-++...+.+.|.+..    ++.|++|.+++.|+++++
T Consensus       470 ~~l~~~~i~-qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q~ALeAF~  548 (559)
T PF14868_consen  470 QLLDPQLIE-QVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQHALEAFG  548 (559)
T ss_pred             HhcChHHHH-HHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            333444433 3333444444 3455557888888888777766555444455555443    456888888888888888


Q ss_pred             HhccccCh
Q 016814          296 LLAPVMGS  303 (382)
Q Consensus       296 ~l~~~~~~  303 (382)
                      .+++..+.
T Consensus       549 ~FAe~T~~  556 (559)
T PF14868_consen  549 QFAERTSH  556 (559)
T ss_pred             HHhccCCc
Confidence            88766553

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=93.31  E-value=5.2  Score=35.00  Aligned_cols=136  Identities=13%  Similarity=0.125  Sum_probs=83.4

Q ss_pred             hHHHHHHHHhHHHHhhhc-hhhhHHHHHHHHHH-Hhc---cchhHHHHH-HHHHHHHHHHHhChH------HHHhhhHHH
Q 016814          207 RVRLAIIEYIPLLASQLG-VGFFDDKLGALCMQ-WLQ---DKVYSIRDA-AANNLKRLAEEFGPE------WAMQHITPQ  274 (382)
Q Consensus       207 ~vr~~~~~~l~~l~~~~~-~~~~~~~l~~~l~~-~l~---d~~~~vr~~-a~~~l~~~~~~~~~~------~~~~~l~~~  274 (382)
                      .+|+.+++.+........ .+...+.++|.+.. .+.   +..+..|.. .+..++.++..++..      ...+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            356777777777766554 23333344444333 222   233444443 245555555555541      233444444


Q ss_pred             HHhhhcC---cchHHHHHHHHHHHHhccccChh------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          275 VLEMINN---PHYLYRMTILRAISLLAPVMGSE------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       275 l~~~l~~---~~~~~r~~a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      ..+++.+   ..+..|......+..+.+.+-..      .....++..+.-++++++.++...+++++..+...+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            4555543   34789999999998888765322      24567778888889999999999999999999887765

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=93.29  E-value=1.1  Score=33.34  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=51.5

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhh
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~  341 (382)
                      ...+..+...+.++++.+...|+..+..+.++||..+    ....++..+.+.+.++..  .||..++..+..+...+.
T Consensus        36 k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       36 KDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            3456667777778888888888888888888887652    234566666666665433  288888888888887765

Unpublished observations. Domain of unknown function.

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=93.27  E-value=1.6  Score=32.86  Aligned_cols=74  Identities=12%  Similarity=0.192  Sum_probs=55.2

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhhhhcCCCc--hH--HHHHHHHHHHhhcccc
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVKELSSDSS--QH--VRSALASVIMGMAPLL  145 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~~~~~d~~--~~--vr~~a~~~l~~l~~~~  145 (382)
                      .+.+..+.+.+.+.++.+...|+..+..+.+.+|.....    ..++..+..++.++.  +.  ||..+...+..+...+
T Consensus        41 kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f  120 (140)
T PF00790_consen   41 KEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAF  120 (140)
T ss_dssp             HHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHH
Confidence            457888888888899999999999999999988766332    246666666554322  22  8999999888888777


Q ss_pred             Ch
Q 016814          146 GK  147 (382)
Q Consensus       146 ~~  147 (382)
                      +.
T Consensus       121 ~~  122 (140)
T PF00790_consen  121 KS  122 (140)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=93.24  E-value=5.3  Score=34.94  Aligned_cols=135  Identities=16%  Similarity=0.277  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhh-hcCC--------CchHHHHHHHHHHHhhccccChH--hHHHhhHHH
Q 016814           90 EVRIAAAGKVTKFCRILN-PELAIQHILPCVKE-LSSD--------SSQHVRSALASVIMGMAPLLGKD--ATIEQLLPI  157 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~-~~~d--------~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l~~~  157 (382)
                      .||+..++.+..+..... .+.+.+.++|.+.+ .+.|        .+++|-......+..+.+.+.+.  ...+.++..
T Consensus        42 ~iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~  121 (319)
T PF08767_consen   42 TIKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFEC  121 (319)
T ss_dssp             HHHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            466667777777766654 33445566666655 2222        34555555555555555544322  123555555


Q ss_pred             HHHhhcC---CChHHHHHHHHhhHHhhhh-------hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814          158 FLSLLKD---EFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  225 (382)
Q Consensus       158 l~~~l~d---~~~~vr~~~~~~l~~~~~~-------~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  225 (382)
                      ...++++   +.|+.|....+-+..+...       ++++.+ ..++..+...+++++..+-..++..+..+...+..
T Consensus       122 Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f-~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~  198 (319)
T PF08767_consen  122 TLPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQF-KLVIDSIVWGFKHTNREISETGLNILLELLNNVSK  198 (319)
T ss_dssp             HHHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHH-HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            5556654   3589999888888777654       244444 66777777778888888888888888888776644

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=93.21  E-value=1.9  Score=32.08  Aligned_cols=96  Identities=9%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhhh
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKE  121 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~  121 (382)
                      .++||..=...|..+..-      +....+.+..+...+++.++.+...|+..+..+.+.+|...+    ...++..+..
T Consensus        14 ~~~D~~~il~icd~I~~~------~~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~   87 (133)
T cd03561          14 EEPDWALNLELCDLINLK------PNGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVK   87 (133)
T ss_pred             CCccHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHH
Confidence            456776666666665422      122245788888888889999999999999999999887522    1244455666


Q ss_pred             hcCC---CchHHHHHHHHHHHhhccccCh
Q 016814          122 LSSD---SSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       122 ~~~d---~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      ++..   .++.||..+...+..+...++.
T Consensus        88 l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          88 IAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            6654   4678999999998888876664

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=93.09  E-value=0.34  Score=37.43  Aligned_cols=58  Identities=19%  Similarity=0.182  Sum_probs=30.0

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      |..-++|++|.+++.++...+........++..+...+.| +..+|..+...+..++..
T Consensus        38 DDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~   95 (169)
T PF08623_consen   38 DDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQL   95 (169)
T ss_dssp             EGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHh
Confidence            3345566666666666655443332233445555555556 555666655555555443

; PDB: 4A0C_A 1U6G_C.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=92.98  E-value=1.5  Score=33.80  Aligned_cols=116  Identities=16%  Similarity=0.099  Sum_probs=66.9

Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhH-HHhhHHHHHHh
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DAT-IEQLLPIFLSL  161 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~-~~~l~~~l~~~  161 (382)
                      ...+.+|..+.-++.++.+. .++.+.+.+-+.+...+.+....-...++.++..+-+..+.   +.+ .+.+++.+..+
T Consensus        16 ~~~~~~r~~a~v~l~k~l~~-~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~   94 (157)
T PF11701_consen   16 RQPEEVRSHALVILSKLLDA-AREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPL   94 (157)
T ss_dssp             TTSCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHH
T ss_pred             CCCHhHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHH
Confidence            34577888888888887532 23344455666666666665555566666666666554332   221 25666777777


Q ss_pred             hc--CCChHHHHHHHHhhHHhhhhh-chhhHhhhHHHHHHHHhc
Q 016814          162 LK--DEFPDVRLNIISKLDQVNQVI-GIDLLSQSLLPAIVELAE  202 (382)
Q Consensus       162 l~--d~~~~vr~~~~~~l~~~~~~~-~~~~~~~~llp~l~~~~~  202 (382)
                      +.  .++..+...+++.+..-+..- -...+.++.++.+.+..+
T Consensus        95 ~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~~~~~~L~~~~~  138 (157)
T PF11701_consen   95 ASRKSKDRKVQKAALELLSAACIDKSCRTFISKNYVSWLKELYK  138 (157)
T ss_dssp             HH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHHHCHHHHHHHTT
T ss_pred             HhcccCCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHc
Confidence            66  556777777777665543211 112223556666777664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=92.85  E-value=6.3  Score=34.66  Aligned_cols=181  Identities=11%  Similarity=0.077  Sum_probs=112.7

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chhh------h--H-HHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVGF------F--D-DKLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~~------~--~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                      ..+++.+...+..=+++.|..+...+..+...- |...      +  . +.++..+.....+++-..      ..|.+..
T Consensus        75 ~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial------~~g~mlR  148 (335)
T PF08569_consen   75 SDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIAL------NCGDMLR  148 (335)
T ss_dssp             HTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHH------HHHHHHH
T ss_pred             hCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccc------hHHHHHH
Confidence            567777777777778899999999888876542 2211      1  1 445666666655544321      2222222


Q ss_pred             Hh-ChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC---hh---hhhhhhHHHHHhhccCCCccHHHH
Q 016814          261 EF-GPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SE---ITCSRLLPVVINASKDRVPNIKFN  328 (382)
Q Consensus       261 ~~-~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~---~~~~~~l~~l~~~l~d~~~~vR~~  328 (382)
                      .+ ..+.+     .+..+-.+.+....++..+-.-|...+..+.....   .+   .-.+.++..+.+++.++|+-+|..
T Consensus       149 ec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  149 ECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             HHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            21 11221     12234446677788888887778877777654322   12   124566777888999999999999


Q ss_pred             HHHHHHHHhhhhhHH-----H-HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          329 VAKVLQSLIPIVDQS-----M-VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       329 a~~~l~~i~~~~~~~-----~-~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +++.|+.+...-.+-     + -...-+..+-.++.|+...+|..|...+..++.
T Consensus       229 slkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  229 SLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHh
Confidence            999999998543321     1 124566777778999999999999999988764

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2005 consensus 26S proteasome regulatory complex, subunit RPN1/PSMD2 [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=8.4  Score=36.58  Aligned_cols=275  Identities=13%  Similarity=0.085  Sum_probs=136.2

Q ss_pred             cCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD   86 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d   86 (382)
                      -.+++.++..|+-.++........+  -+-.+-++...++.++..+|..++-.|+..-  .|...  .+++..+...+.|
T Consensus       425 ys~~~~ikaGaLLgigi~~~gv~ne--~dpalALLsdyv~~~~s~~ri~aIlGLglay--aGsq~--e~V~~lL~Pi~~d  498 (878)
T KOG2005|consen  425 YSDESYIKAGALLGIGISNSGVFNE--CDPALALLSDYLQSSSSIHRIGAILGLGLAY--AGSQR--EEVLELLSPIMFD  498 (878)
T ss_pred             hcCCchhhhccceeeeeeccccccc--cCHHHHHHHHhccCCCceeehHHhhhhHHhh--cCCch--HHHHHHHhHHhcC
Confidence            3344555555555555544433332  3456777888999999999999999988432  23221  2344455566666


Q ss_pred             CcHH--HHHHHHHHHHHHH-HhhCHHHHHHhhhHhhhhhcC--CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           87 NEAE--VRIAAAGKVTKFC-RILNPELAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        87 ~~~~--VR~~a~~~l~~l~-~~~~~~~~~~~il~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      .+..  |..-+.-+++.+. -.+..+ +...++..+.+-.+  -.+...|=.+.. ++  .-.+|++...+.+...+..+
T Consensus       499 ~~~~~ev~~~aslsLG~IfvGscn~d-vts~ilqtlmekse~El~d~~~RFL~LG-L~--llflgkqe~~d~~~e~~~~i  574 (878)
T KOG2005|consen  499 TKSPMEVVAFASLSLGMIFVGSCNED-VTSSILQTLMEKSETELEDQWFRFLALG-LA--LLFLGKQESVDAVVETIKAI  574 (878)
T ss_pred             CCCchhHHHHHHhhcceeEEecCChH-HHHHHHHHHHHhhhhhhhchHHHHHHHH-HH--HHHhcccchHHHHHHHHHHh
Confidence            6544  5555555555442 223333 33344444443221  122333322221 11  11234333223333222221


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH-HHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL-PAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDKLGALCMQW  239 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll-p~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  239 (382)
                          ....|..+ ..+-..+.+.|.... -.+- ..+...+.++...- ...-...++.-.-..|.+.-.+..+..+..+
T Consensus       575 ----~~~~~~~~-~~lv~~caYaGTGnv-l~Iq~q~ll~~cgE~~~~~e~~~~~avLgiAliAMgeeig~eM~lR~f~h~  648 (878)
T KOG2005|consen  575 ----EGPIRKHE-SILVKSCAYAGTGNV-LKIQSQLLLSFCGEHDADLESEQELAVLGIALIAMGEEIGSEMVLRHFGHL  648 (878)
T ss_pred             ----hhHHHHHH-HHHHHHhhccccCce-EEechhhhhhhcCCCccchhhhccchhhhhhhhhhhhhhhhHHHHHHHHHH
Confidence                22223222 222233444443222 0110 22233333332210 1111222332222345555455667777778


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      +.-.++.+|.+.=-+++-+.-.-+    .-.++..+..+..|.+..+-.+++.+++-++-..
T Consensus       649 l~yge~~iRravPLal~llsvSNP----q~~vlDtLsk~shd~D~eva~naIfamGLiGAGT  706 (878)
T KOG2005|consen  649 LHYGEPHIRRAVPLALGLLSVSNP----QVNVLDTLSKFSHDGDLEVAMNAIFAMGLIGAGT  706 (878)
T ss_pred             HHcCCHHHHHHHHHHHhhhccCCC----cchHHHHHHHhccCcchHHHHHHHHHhccccCCc
Confidence            887888888888777777653221    1237777778778888888888888877765433

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=92.70  E-value=2.6  Score=29.96  Aligned_cols=62  Identities=13%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             CCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH
Q 016814          204 RHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA  267 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~  267 (382)
                      .....|..+++.++.+.+..|+  ..+.++++-.+...+..+  +.|..+++++..+++.++.+.+
T Consensus        27 ~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l   90 (107)
T PF08064_consen   27 KPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDL   90 (107)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHH
Confidence            4556788888999988883333  223466777777666654  8999999999999999887543

; GO: 0004674 protein serine/threonine kinase activity

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=92.54  E-value=4.6  Score=32.37  Aligned_cols=64  Identities=20%  Similarity=0.224  Sum_probs=49.9

Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      +.+.+...|++..+|+.+...+......   +...+.+++.+...+.|++..|+.++..+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            6778888888888888887776665433   223567888888888888899999999988888766

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []

Probab=91.96  E-value=0.54  Score=36.35  Aligned_cols=63  Identities=16%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE  109 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~  109 (382)
                      -|..-.+|++|.+++..+.+.+........+++.+...+.| +..||.-+...+.+++...+..
T Consensus        37 vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~   99 (169)
T PF08623_consen   37 VDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEE   99 (169)
T ss_dssp             EEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHH
T ss_pred             ecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHH
Confidence            46677999999999999998776665556788889999999 8999999999999997765444

; PDB: 4A0C_A 1U6G_C.

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=91.92  E-value=11  Score=35.54  Aligned_cols=158  Identities=10%  Similarity=0.097  Sum_probs=94.5

Q ss_pred             cccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh---hc-----CCCchHHHHHHHHHHH
Q 016814           70 EPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPELAIQHILPCVKE---LS-----SDSSQHVRSALASVIM  139 (382)
Q Consensus        70 ~~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~---~~-----~d~~~~vr~~a~~~l~  139 (382)
                      .......+..+-..+.+.+  |+--...++++|++...++.+....-++..++.   ++     +|...-|-+.....+|
T Consensus       476 ~Dte~~mi~Klarq~dg~EWsw~nlNtLcWAIGSISGamsE~~EkrF~VnviKdLL~LcemKrgKdnKAVvASnIMyvvG  555 (1053)
T COG5101         476 DDTEKYMIGKLARQLDGKEWSWNNLNTLCWAIGSISGAMSEVNEKRFFVNVIKDLLALCEMKRGKDNKAVVASNIMYVVG  555 (1053)
T ss_pred             hhHHHHHHHHHHHHhcCCccchhhHhHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHhhcCCcchhhecceeeeec
Confidence            3334456777777777775  566778889999998877766333333333333   33     2322222222222222


Q ss_pred             hhccccCh-HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----------hhHhhhHHHHHHHHhcCCCchH
Q 016814          140 GMAPLLGK-DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------DLLSQSLLPAIVELAEDRHWRV  208 (382)
Q Consensus       140 ~l~~~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~----------~~~~~~llp~l~~~~~d~~~~v  208 (382)
                      ..-..+.. -.+...++.-+.+++.+..+.|+..++..+-++.+..+.          +.+...++..+.....|=.+.-
T Consensus       556 QYpRFLkahw~FLkTVv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ  635 (1053)
T COG5101         556 QYPRFLKAHWSFLKTVVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQ  635 (1053)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHH
Confidence            22111111 113355666666777788899999999999888765432          3445566666666667777777


Q ss_pred             HHHHHHHhHHHHhhhchhh
Q 016814          209 RLAIIEYIPLLASQLGVGF  227 (382)
Q Consensus       209 r~~~~~~l~~l~~~~~~~~  227 (382)
                      .....++++.+....+...
T Consensus       636 ~htfYeAcg~vIse~p~~~  654 (1053)
T COG5101         636 KHTFYEACGMVISEVPKTR  654 (1053)
T ss_pred             HhHHHHHHhHHHhccchhh
Confidence            7888888888776655433

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=91.76  E-value=6.1  Score=32.10  Aligned_cols=133  Identities=15%  Similarity=0.115  Sum_probs=84.0

Q ss_pred             hhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-CcHHHHHHHHH-HHHHHHHhhCHHHHHH
Q 016814           36 HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NEAEVRIAAAG-KVTKFCRILNPELAIQ  113 (382)
Q Consensus        36 ~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~~~VR~~a~~-~l~~l~~~~~~~~~~~  113 (382)
                      ....++..+.+++.-+.|..++..+...-...+.+     -++.+...+.+ ++|.+-...+. .++.+... .     +
T Consensus        46 ~~~~l~~~Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~-~-----~  114 (208)
T cd07064          46 ELWELVLELWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD-Y-----P  114 (208)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC-C-----h
Confidence            44455566777777788888888877654433222     24445555444 35665544333 33433221 1     1


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      ...+.+.+...|++..+|.+++-+.-.+.+..    ..+.+..++...+.|+..-|++++..+|..+++.
T Consensus       115 ~~~~~l~~W~~s~~~W~rR~ai~~~l~~~~~~----~~~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         115 EFEPVMDEWSTDENFWLRRTAILHQLKYKEKT----DTDLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             hHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc----CHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            23577888888888888888876544444322    2356677788888998899999988888887765

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=91.63  E-value=2.9  Score=31.54  Aligned_cols=97  Identities=12%  Similarity=0.147  Sum_probs=58.8

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh----hhhhhHHH-
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV-  313 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~-  313 (382)
                      +..++|..-...+..+..  ...|+    ...+..+...+. +++..+...|+..+..+.++||...    ....++.. 
T Consensus        14 l~~~dw~~ileicD~In~--~~~~~----k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~   87 (141)
T cd03565          14 LQSEDWGLNMEICDIINE--TEDGP----KDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV   87 (141)
T ss_pred             CCCcCHHHHHHHHHHHhC--CCCcH----HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence            344566555544444432  11232    235555566665 4567777778888888888888652    22456655 


Q ss_pred             HHhhccC---CCccHHHHHHHHHHHHhhhhhH
Q 016814          314 VINASKD---RVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       314 l~~~l~d---~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      +.+.+.+   ....|+..++..+..+...++.
T Consensus        88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~  119 (141)
T cd03565          88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRG  119 (141)
T ss_pred             HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCC
Confidence            6666543   2346888888888888877754

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=91.58  E-value=12  Score=35.27  Aligned_cols=108  Identities=9%  Similarity=0.090  Sum_probs=62.3

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-----------------------HHH-------HhhhHhhhhhcCC
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----------------------LAI-------QHILPCVKELSSD  125 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-----------------------~~~-------~~il~~l~~~~~d  125 (382)
                      .+..+.+.+.+.++.+++-++-.|..+-+.+-+.                       .+.       ...+..+....++
T Consensus       211 ~L~~l~eml~s~n~~~~Kl~~lSLlaVFKDIiP~YkIR~lte~Ek~~k~sKev~klr~yE~~Ll~~Yk~ylQkLe~~vK~  290 (704)
T KOG2153|consen  211 KLKELFEMLDSQNPKAKKLALLSLLAVFKDIIPGYKIRPLTEKEKRTKLSKEVLKLREYEQALLKQYKSYLQKLEQFVKD  290 (704)
T ss_pred             HHHHHHHHHhhhchHHHHHHHHHHHHHHHhhcccceecccHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4555666667777777777766666655443221                       111       1222333333333


Q ss_pred             Cc---h---HHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          126 SS---Q---HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       126 ~~---~---~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      .+   +   ..-..|+++++.+....+.-.+.+.++..+..++++....++..++.++..+...
T Consensus       291 ~~~~~~~~v~l~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~  354 (704)
T KOG2153|consen  291 LSLRTPQQVSLAQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN  354 (704)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence            31   1   1223455555555444333334578888888889998889999999998877643

>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans)

Probab=91.56  E-value=8.5  Score=33.33  Aligned_cols=179  Identities=18%  Similarity=0.123  Sum_probs=122.6

Q ss_pred             hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHH
Q 016814           76 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATI  151 (382)
Q Consensus        76 ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~  151 (382)
                      +-..+.++++-.- ..|-..|++....+.+.++++...+   ...|-+..++...+-.||-..+..+....--+|+ ...
T Consensus        55 v~krLaqCL~P~LPsGVH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~-~L~  133 (307)
T PF04118_consen   55 VSKRLAQCLNPALPSGVHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP-ALR  133 (307)
T ss_pred             HHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH-HHH
Confidence            4555566665443 4588889999999999998884332   3456666677777889999999999987767776 333


Q ss_pred             ---HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc----
Q 016814          152 ---EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG----  224 (382)
Q Consensus       152 ---~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~----  224 (382)
                         +.++..+...+.|+..++...+.+.+..+...++.+.|.+.+.-.+.     .++.+|..++..+..-.....    
T Consensus       134 p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii-----~sp~~Rl~al~~l~~~l~~~~~~~~  208 (307)
T PF04118_consen  134 PCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII-----TSPSRRLGALNYLLRRLPKFQNDEL  208 (307)
T ss_pred             HHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh-----cCcchhHHHHHHHHHhCCccccccc
Confidence               33444444557888999999999999999999998765555443333     457788888777655433322    


Q ss_pred             --h-h----hh---HHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          225 --V-G----FF---DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       225 --~-~----~~---~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                        . +    .+   ..-++..+...+.|++.-|+..++..+-....
T Consensus       209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~P  254 (307)
T PF04118_consen  209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFP  254 (307)
T ss_pred             ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCC
Confidence              0 0    00   13467777888888888888887777655443

DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=91.43  E-value=3.7  Score=29.98  Aligned_cols=35  Identities=17%  Similarity=0.224  Sum_probs=20.7

Q ss_pred             HHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccC
Q 016814          112 IQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       112 ~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      ...++|.+.+.++ ...++.|.++...++.++...+
T Consensus         4 l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~   39 (121)
T PF12397_consen    4 LPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP   39 (121)
T ss_pred             HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence            3455666666665 5556666666666666654443

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []

Probab=91.31  E-value=3.3  Score=29.48  Aligned_cols=59  Identities=12%  Similarity=0.151  Sum_probs=32.4

Q ss_pred             cHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH
Q 016814           88 EAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus        88 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      +..-|..++.+++.+.+..++.  .+..+++-.+...++.+  .+|..++++...+.+.++.+
T Consensus        28 ~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~   88 (107)
T PF08064_consen   28 PIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEE   88 (107)
T ss_pred             CHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHH
Confidence            3455667777777777733322  22223333333333332  67777777777777666654

; GO: 0004674 protein serine/threonine kinase activity

>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.26  E-value=22  Score=37.41  Aligned_cols=245  Identities=13%  Similarity=0.078  Sum_probs=128.9

Q ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814           79 AYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ  153 (382)
Q Consensus        79 ~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  153 (382)
                      .+++-+.-.++.-|..|++.+..++.....+....   .....+.++..|.+..||...-..+..+...+++..  ..+.
T Consensus        45 ~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~LK~  124 (1312)
T KOG0803|consen   45 IIVKKLLKRDETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFLKS  124 (1312)
T ss_pred             HHHHHHhccChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHHHh
Confidence            33444444678888889999999888776554332   233345567889999999999999888887666542  3356


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      ++|...-...|....|-..+-.++.....   ++..     |.+...++       ..+...........++.-.. ...
T Consensus       125 li~~wl~~~~d~~~~vs~aa~~sf~~~f~---~ek~-----~~v~~~c~-------~~i~~~~~~~~~~~~~~slS-d~~  188 (1312)
T KOG0803|consen  125 LIPPWLGGQFDLDYPVSEAAKASFKDGFA---EEKD-----RHVWFKCD-------PEIFYLVTEILVKETPDSLS-DLR  188 (1312)
T ss_pred             hhhhhhheecccchHHHHHHHHHHHhhcC---hhhh-----HHHHHHhh-------HHHHHHHHHHHhccCccccc-hhh
Confidence            66666666666666666666555554432   1111     11100000       00111111111111111100 000


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh-------hh--HHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ-------HI--TPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  304 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~-------~l--~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  304 (382)
                      -.-..-+.....+|...++..+..+....|.+.-..       .+  -..+...++++++.+|.+..+.+..+.+.+..-
T Consensus       189 ~~s~Ee~E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~~  268 (1312)
T KOG0803|consen  189 TLSSEELESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILNR  268 (1312)
T ss_pred             hcchHHHHHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHHh
Confidence            000111222344555666666666665555432111       11  123455677888889998888888877654432


Q ss_pred             ---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          305 ---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       305 ---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                         ....++-|.+.....+.. .+-....+.+-.....+
T Consensus       269 ~~~~~~~~l~~~~~~~~~~~d-~~c~~~we~Vl~~~~~~  306 (1312)
T KOG0803|consen  269 VMESEKNYLKPVLLGSIDSLD-HVCSSMWEKVLLNLSSL  306 (1312)
T ss_pred             cchhhhhHhhHHHHccccccc-cccHHHHHHHHHHhhhh
Confidence               234556666666665544 44444444444333433

>COG5101 CRM1 Importin beta-related nuclear transport receptor [Nuclear structure / Intracellular trafficking and secretion]

Probab=90.89  E-value=15  Score=34.86  Aligned_cols=72  Identities=11%  Similarity=0.092  Sum_probs=54.8

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----------HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----------LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  145 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----------~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  145 (382)
                      ++..+.+++......|+..|+..+-.++..|+..          .+...++.-+-+...|-.|.-....-++++.+....
T Consensus       571 Vv~KLFEFMhE~HEGvqDMACDtFiKIvqKC~~hFv~Qq~gesEpFI~~Iirnl~ktT~dL~pqQ~htfYeAcg~vIse~  650 (1053)
T COG5101         571 VVKKLFEFMHEDHEGVQDMACDTFIKIVQKCPVHFVTQQEGESEPFIVYIIRNLPKTTGDLEPQQKHTFYEACGMVISEV  650 (1053)
T ss_pred             HHHHHHHHHhhhhhhHHhhhHHHHHHHHHhCcHHHhhcCCCCCCcHHHHHHHhhhhhcccCChHHHhHHHHHHhHHHhcc
Confidence            5667778888888999999999999999887644          455566666666777878877777778888776655


Q ss_pred             Ch
Q 016814          146 GK  147 (382)
Q Consensus       146 ~~  147 (382)
                      +.
T Consensus       651 p~  652 (1053)
T COG5101         651 PK  652 (1053)
T ss_pred             ch
Confidence            53

>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein

Probab=90.71  E-value=5.8  Score=29.89  Aligned_cols=98  Identities=12%  Similarity=0.162  Sum_probs=66.6

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHh-
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELA----IQHILPC-  118 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~-  118 (382)
                      +.++||..=...|..+..     + .....+.+-.+.+-++ ++++.|...|+..+..+++.+|...+    ...++.. 
T Consensus        14 l~~~dw~~ileicD~In~-----~-~~~~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~   87 (141)
T cd03565          14 LQSEDWGLNMEICDIINE-----T-EDGPKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDV   87 (141)
T ss_pred             CCCcCHHHHHHHHHHHhC-----C-CCcHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHH
Confidence            355677776666666542     1 1222456667776666 46888988899999999999987632    3456665 


Q ss_pred             hhhhcCC---CchHHHHHHHHHHHhhccccChH
Q 016814          119 VKELSSD---SSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       119 l~~~~~d---~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      +..++.+   ....|+..++..+..+...+..+
T Consensus        88 L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (141)
T cd03565          88 LVKLINPKNNPPTIVQEKVLALIQAWADAFRGS  120 (141)
T ss_pred             HHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            6666653   34589999999999888777543

The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=90.27  E-value=27  Score=36.89  Aligned_cols=293  Identities=13%  Similarity=0.064  Sum_probs=146.3

Q ss_pred             cCCchHHHHHHHHHHHHHHhccChhhh---hhhhhhhhhh----------hcc--C---CCHHHHHHHHHHHHHHHHHhC
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLEPQDC---VAHILPVIVN----------FSQ--D---KSWRVRYMVANQLYELCEAVG   68 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~----------~~~--d---~~~~vR~~a~~~l~~l~~~~~   68 (382)
                      .+++...|+.|-..|..|+...+.+..   +..+++++.+          +++  +   ....++.-.|.++-.|.+.--
T Consensus       248 d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF  327 (2195)
T KOG2122|consen  248 DDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF  327 (2195)
T ss_pred             chhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc
Confidence            445778999999999999987765322   2334444442          111  1   122344444444443433222


Q ss_pred             Cccccc---c--hHHHHHHhc-----------CCC-cHHHHHHHHHHHHHHHHhhCHH------HHHHhhhHhhhhhcCC
Q 016814           69 PEPTRM---D--LVPAYVRLL-----------RDN-EAEVRIAAAGKVTKFCRILNPE------LAIQHILPCVKELSSD  125 (382)
Q Consensus        69 ~~~~~~---~--ll~~l~~~l-----------~d~-~~~VR~~a~~~l~~l~~~~~~~------~~~~~il~~l~~~~~d  125 (382)
                      ++.+..   +  .+..+-+++           +|. ...+|..+..+|.++  .+|..      .-...++..++..+..
T Consensus       328 DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNL--TFGDv~NKa~LCs~rgfMeavVAQL~s  405 (2195)
T KOG2122|consen  328 DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNL--TFGDVANKATLCSQRGFMEAVVAQLIS  405 (2195)
T ss_pred             cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcc--ccccccchhhhhhhhhHHHHHHHHHhc
Confidence            222211   1  122222222           232 245788888888776  33322      1123466666666666


Q ss_pred             CchHHHHHHHHHHHhhccccCh---HhHH--HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHH
Q 016814          126 SSQHVRSALASVIMGMAPLLGK---DATI--EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPA  196 (382)
Q Consensus       126 ~~~~vr~~a~~~l~~l~~~~~~---~~~~--~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~  196 (382)
                      ....+....+..|..+.=..+.   ..+.  -.+.-+..-.+....+..-++++.+|..+.......+.    .+..+.+
T Consensus       406 ~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaF  485 (2195)
T KOG2122|consen  406 APEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAF  485 (2195)
T ss_pred             ChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHH
Confidence            6666666666666666422211   0000  01111111123333333334444444444333222111    1233444


Q ss_pred             HHHHhcCCCc----hHHHHHHHHhHHHHhhhc----hh-h-hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          197 IVELAEDRHW----RVRLAIIEYIPLLASQLG----VG-F-FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       197 l~~~~~d~~~----~vr~~~~~~l~~l~~~~~----~~-~-~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      |..++.-+..    .+-..+-..|..+...+.    .. . .....+..+.+.|++.+-.|-..++..|+.+.-....+.
T Consensus       486 LVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQ  565 (2195)
T KOG2122|consen  486 LVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQ  565 (2195)
T ss_pred             HHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHH
Confidence            5444432211    111222222222222221    11 1 123467778888888888888899999988876543321


Q ss_pred             ---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          267 ---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       267 ---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                         +....++.+.+++.+++..+-+.++.++..+..+-
T Consensus       566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence               34457788888898888888888888888776443

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=89.99  E-value=11  Score=31.89  Aligned_cols=138  Identities=16%  Similarity=0.187  Sum_probs=84.5

Q ss_pred             HhhHHHHHHhhcCCC----hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHH-HhHHHHhhhchh
Q 016814          152 EQLLPIFLSLLKDEF----PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE-YIPLLASQLGVG  226 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~----~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~-~l~~l~~~~~~~  226 (382)
                      -..+|.+..-+.++.    ..--..++..+..+++..+.+.    +-..+..+.+... +-+...+. ....+.+.+.++
T Consensus       110 la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~----La~il~~ya~~~f-r~~~dfl~~v~~~l~~~f~P~  184 (262)
T PF14225_consen  110 LALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPN----LARILSSYAKGRF-RDKDDFLSQVVSYLREAFFPD  184 (262)
T ss_pred             HHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCcc----HHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhCch
Confidence            345577777666655    1334466678888876555433    3333444444444 43344333 334444545444


Q ss_pred             hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814          227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      . ..+++..+..++.....++|....+.+..+......+ ....+++..+.+++..+.|..   |++.+..+.
T Consensus       185 ~-~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~~e---AL~VLd~~v  253 (262)
T PF14225_consen  185 H-EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLWME---ALEVLDEIV  253 (262)
T ss_pred             h-HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccHHH---HHHHHHHHH
Confidence            3 2356777888888888999999999999998876432 244567888888888777754   444444443

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=89.48  E-value=31  Score=36.47  Aligned_cols=70  Identities=14%  Similarity=0.137  Sum_probs=55.5

Q ss_pred             hhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          308 SRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       308 ~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ...+..+++.|++.+-.+..+++.+|-.+...-..+   .......+.|..+++..+..+-...+.|+..+..
T Consensus       529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln  601 (2195)
T KOG2122|consen  529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLN  601 (2195)
T ss_pred             hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhc
Confidence            457788999999999999999999998887654432   2346778889999999999888888888887653

>COG2733 Predicted membrane protein [Function unknown]

Probab=89.28  E-value=15  Score=32.51  Aligned_cols=88  Identities=17%  Similarity=0.172  Sum_probs=40.3

Q ss_pred             HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814          169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  248 (382)
                      |-....+.+..+...+..+.+...+-..+.+-+...+|.  ..+...|..+....+.+.+.+.++..+...+.+  .+++
T Consensus       127 v~~~t~~l~~~~~~lld~~~iq~~ik~~v~~~i~e~~~~--~~~~~vL~~l~~d~r~q~l~D~~~~~L~r~~~~--~~v~  202 (415)
T COG2733         127 VSQETLKLLSQLLELLDDDDIQRVIKRAVIRAIAEVYLG--PTAGRVLESLTADDRHQALLDKLIDRLIRWLLN--DKVR  202 (415)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhccccc--chHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--hhhH
Confidence            333344444444444554444222222233333333333  333444445544445555555555555554443  4555


Q ss_pred             HHHHHHHHHHHH
Q 016814          249 DAAANNLKRLAE  260 (382)
Q Consensus       249 ~~a~~~l~~~~~  260 (382)
                      +.+...+..+.+
T Consensus       203 ~~i~~~i~r~~~  214 (415)
T COG2733         203 EFIAAVIVRYLE  214 (415)
T ss_pred             HHHHHHHHHHHH
Confidence            555555555554

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=89.09  E-value=15  Score=34.01  Aligned_cols=146  Identities=13%  Similarity=0.157  Sum_probs=91.4

Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhHHHH---hhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH----
Q 016814          193 LLPAIVELAEDRHWRVRLAIIEYIPLLA---SQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----  265 (382)
Q Consensus       193 llp~l~~~~~d~~~~vr~~~~~~l~~l~---~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----  265 (382)
                      +...+.+++.++.-.+.......+....   ..+|..+....++..+.+++...+...|......+..+.-.+..+    
T Consensus       432 I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~  511 (743)
T COG5369         432 IVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKFK  511 (743)
T ss_pred             hHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhhh
Confidence            4445555666655444433333333322   234566667889999999998888889988888888777655443    


Q ss_pred             HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-h---hh------hhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          266 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-E---IT------CSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       266 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~---~~------~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                      ...+.=+..+.++.+|+.|.+.+..+..+..+.-.... +   .+      ...+...++..+...+|---...+..+..
T Consensus       512 ~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~  591 (743)
T COG5369         512 FLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVR  591 (743)
T ss_pred             hHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHH
Confidence            22333355678888999999999999999987532221 1   11      23455566666666676544444555555


Q ss_pred             Hhh
Q 016814          336 LIP  338 (382)
Q Consensus       336 i~~  338 (382)
                      ++.
T Consensus       592 ~aa  594 (743)
T COG5369         592 NAA  594 (743)
T ss_pred             HHh
Confidence            544

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=88.55  E-value=0.85  Score=25.43  Aligned_cols=28  Identities=32%  Similarity=0.424  Sum_probs=21.2

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFC  103 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~  103 (382)
                      .+|.+.+++.++++.++..++.+|.+++
T Consensus        13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       13 GLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            5777777777777888888888877764

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=88.45  E-value=8.4  Score=28.56  Aligned_cols=134  Identities=13%  Similarity=0.053  Sum_probs=83.3

Q ss_pred             ccchhHHHHHHHHHHHHHHHHhChHHH----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-hhhhhh-hHHHH
Q 016814          241 QDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSR-LLPVV  314 (382)
Q Consensus       241 ~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~-~l~~l  314 (382)
                      ...+.+-++.....++.|+-  .+-.+    .-+++..+...+..++....+-++..++.++..-.. +.+.+. =+|.+
T Consensus        27 ~tt~~eakeqv~ANLANFAY--DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~I~ea~g~pli  104 (173)
T KOG4646|consen   27 TTTNIEAKEQVTANLANFAY--DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKFIREALGLPLI  104 (173)
T ss_pred             HhccHHHHHHHHHHHHhhcc--CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHHHHHhcCCceE
Confidence            34566777777777777763  33221    235777788888888988888888887776633222 222222 25677


Q ss_pred             HhhccCCCccHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          315 INASKDRVPNIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      +..+.|++..+-.+++.++-.+...-.   +......++..+.........+.|..|..++....
T Consensus       105 i~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~s~~~rnLa~~fl~~~~  169 (173)
T KOG4646|consen  105 IFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESKSHDERNLASAFLDKHV  169 (173)
T ss_pred             EeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence            888999888888888887776643211   22334555666665554555566666666665543

>KOG1877 consensus Putative transmembrane protein cmp44E [General function prediction only]

Probab=88.37  E-value=20  Score=35.24  Aligned_cols=90  Identities=14%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH--h--HHHhhHHHHHHhhcCC
Q 016814           92 RIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD--A--TIEQLLPIFLSLLKDE  165 (382)
Q Consensus        92 R~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~--~--~~~~l~~~l~~~l~d~  165 (382)
                      -+.|++++..+...|..  ..+.+.++..+.+++++.++.++..++.++..|+..-++.  .  ..+.+++.+.+++...
T Consensus        73 v~Iamea~~kLL~~C~eq~n~F~ssfL~mv~~LLes~~~~~~ilg~~sf~~F~~i~~d~~sy~~~yd~Fi~kf~~l~he~  152 (819)
T KOG1877|consen   73 VKIAMEAYDKLLQACKEQINLFVSSFLRMVQKLLESNNDEMQILGTNSFVKFANIEEDGPSYHRNYDFFISKFSSLCHER  152 (819)
T ss_pred             hhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCceeeehhhHHHHHHhhcccCchhhhhhHHHHHHHHHHhhcc
Confidence            34456677776666543  3667788899999999999999999999999998554322  1  2367788888887652


Q ss_pred             -C----hHHHHHHHHhhHHhh
Q 016814          166 -F----PDVRLNIISKLDQVN  181 (382)
Q Consensus       166 -~----~~vr~~~~~~l~~~~  181 (382)
                       +    ..+|.+-++++..+.
T Consensus       153 ~~~~~~~~lr~agl~gLsa~v  173 (819)
T KOG1877|consen  153 GDDDMKDCLRAAGLQGLSAVV  173 (819)
T ss_pred             cchhhhhhccHhhhhhHHHHH
Confidence             2    345555556655543

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=88.28  E-value=5.7  Score=28.21  Aligned_cols=72  Identities=13%  Similarity=0.255  Sum_probs=45.6

Q ss_pred             hHHHHHHhcCCCc----HHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh
Q 016814           76 LVPAYVRLLRDNE----AEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA  149 (382)
Q Consensus        76 ll~~l~~~l~d~~----~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~  149 (382)
                      ++..+.+.++|.+    ..-|+.++.+++.+.+.+++.  ....++.-.+...++  .++.|..++++...+...++.+.
T Consensus        12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~   89 (107)
T smart00802       12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEE   89 (107)
T ss_pred             HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHH
Confidence            3444555555554    234888888888888866543  222334444444554  45688889888888888777543

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.88  E-value=8.6  Score=28.03  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=43.7

Q ss_pred             HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      +.+.....|++|..=...+..+..+... +... ...++..+.+-|++.++.|+..++..|..++..-+
T Consensus         4 ~ll~~ATsdd~~p~pgy~~~Eia~~t~~-s~~~-~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~   70 (122)
T cd03572           4 SLLSKATSDDDEPTPGYLYEEIAKLTRK-SVGS-CQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGN   70 (122)
T ss_pred             HHHHHHhcCCCCCCchHHHHHHHHHHHc-CHHH-HHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCC
Confidence            3455555566655445555555555433 2222 23678888888888888998999999888887543

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF14868 DUF4487: Domain of unknown function (DUF4487)

Probab=87.69  E-value=26  Score=33.29  Aligned_cols=87  Identities=15%  Similarity=0.189  Sum_probs=62.1

Q ss_pred             HHHHHhccccChhhhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH----hcCCCCccHHh
Q 016814          292 RAISLLAPVMGSEITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE----LTEDPDVDVRF  366 (382)
Q Consensus       292 ~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~----l~~d~~~~vr~  366 (382)
                      ..++.+.+.+.++ ...+++-.+...+ ..+...+|.+.+..++.+++...++.....+.|.+-.    ++.|++|-++.
T Consensus       463 ~l~~~~~~~l~~~-~i~qv~~~l~~l~~~~pp~~~kl~~~~FLs~lg~~~i~~~~q~~~~~~Ls~Lf~~LL~d~~Wll~q  541 (559)
T PF14868_consen  463 SLLSFFIQLLDPQ-LIEQVLTELTSLFKSEPPDHVKLALLDFLSSLGKLFIPESDQNPVSPALSELFHMLLADRHWLLHQ  541 (559)
T ss_pred             HHHHHHHHhcChH-HHHHHHHHHHHHHhhCCCccchHHHHHHHHHhccccCCccccchhhhHHHHHHHHHhcCCcHHHHH
Confidence            3334444444444 4455666666666 3444559999999999999877766555666666655    58999999999


Q ss_pred             HHHHHHHHHHHHh
Q 016814          367 FATQAIQSIDHVM  379 (382)
Q Consensus       367 ~a~~al~~~~~~~  379 (382)
                      .|.+|++.++..-
T Consensus       542 ~ALeAF~~FAe~T  554 (559)
T PF14868_consen  542 HALEAFGQFAERT  554 (559)
T ss_pred             HHHHHHHHHhccC
Confidence            9999999998754

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.62  E-value=8.6  Score=27.70  Aligned_cols=37  Identities=11%  Similarity=0.050  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      ..++..+.+.+.+++|.+...|+..+..+++++|..+
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f   72 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERF   72 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHH
Confidence            3456666666677777777777777777777766543

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>smart00567 EZ_HEAT E-Z type HEAT repeats

Probab=87.57  E-value=0.76  Score=23.79  Aligned_cols=29  Identities=34%  Similarity=0.334  Sum_probs=15.8

Q ss_pred             HHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC
Q 016814           50 WRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD   86 (382)
Q Consensus        50 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d   86 (382)
                      |.+|..++..|+++..        ...++.+.+.++|
T Consensus         1 ~~vR~~aa~aLg~~~~--------~~a~~~L~~~l~d   29 (30)
T smart00567        1 PLVRHEAAFALGQLGD--------EEAVPALIKALED   29 (30)
T ss_pred             CHHHHHHHHHHHHcCC--------HhHHHHHHHHhcC
Confidence            3566666666666531        2345555555554

Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=87.56  E-value=4.8  Score=35.37  Aligned_cols=69  Identities=13%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHH----HhhhHHHHHhhhcC-cchHHHHHHHHHHHHhcc
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINN-PHYLYRMTILRAISLLAP  299 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~----~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~  299 (382)
                      ..+..+++.+...++.|...|+..++.+..++|..+.    ...+...+..++.+ .+..+++.....+...++
T Consensus        45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWse  118 (462)
T KOG2199|consen   45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSE  118 (462)
T ss_pred             HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHH
Confidence            4455555555656666666666666666666555332    22344444444442 234444444444444443

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=87.48  E-value=4.4  Score=27.49  Aligned_cols=68  Identities=18%  Similarity=0.178  Sum_probs=40.9

Q ss_pred             HHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHH
Q 016814          267 AMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQ  334 (382)
Q Consensus       267 ~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~  334 (382)
                      +...++..+...+ ..++..+|+..+.++.++....|..  .-+..++..+-....|.+..+-..|.+++.
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~   84 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQ   84 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHh
Confidence            3444555555543 3345677777777777777666543  345566666666666666666666655554

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain

Probab=87.45  E-value=8.8  Score=27.64  Aligned_cols=38  Identities=16%  Similarity=0.219  Sum_probs=32.1

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  228 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  228 (382)
                      ..+...+.+-+++++|++...++..+..+.+..|+.+.
T Consensus        36 ~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~   73 (115)
T cd00197          36 KEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFH   73 (115)
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHH
Confidence            56777777778889999999999999999998887654

The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra

>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length

Probab=87.39  E-value=9.2  Score=27.84  Aligned_cols=34  Identities=21%  Similarity=0.244  Sum_probs=22.9

Q ss_pred             hhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhc
Q 016814          191 QSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       191 ~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      ..++|.+...++ ....+.|.+++..++.++....
T Consensus         5 ~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~   39 (121)
T PF12397_consen    5 PRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVP   39 (121)
T ss_pred             HHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcC
Confidence            566777777666 6666777777777777766543

The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=87.18  E-value=26  Score=32.69  Aligned_cols=284  Identities=13%  Similarity=0.110  Sum_probs=150.1

Q ss_pred             CHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCC
Q 016814           49 SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSD  125 (382)
Q Consensus        49 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d  125 (382)
                      .-..|..+++.+.......+-+. ...+......++..+. .++|.++++.+..+++.-..  ......+...+..--.+
T Consensus         3 ~l~~R~~a~~~l~~~i~~~~~~~-i~~iW~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R~~fF~~I~~~~~~   81 (464)
T PF11864_consen    3 PLSERIKAAEELCESIQKYPLSS-IEEIWYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMRAEFFRDISDPSND   81 (464)
T ss_pred             CHHHHHHHHHHHHHHHHhCCchH-HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHhcCCCc
Confidence            34567778888777776665532 2345555555665553 66999999999999886543  12222333333333334


Q ss_pred             CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCC---------------------------hHHHHHHHHhhH
Q 016814          126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEF---------------------------PDVRLNIISKLD  178 (382)
Q Consensus       126 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~---------------------------~~vr~~~~~~l~  178 (382)
                      ++-..|-.+..+|..=++.+.  .+...+.|.+...+....                           ...-...+.-+.
T Consensus        82 ~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~  159 (464)
T PF11864_consen   82 DDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNLSDLLQFLV  159 (464)
T ss_pred             hhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhHHHHHHHHH
Confidence            444566666666655444332  133455555555442211                           011111122222


Q ss_pred             Hhhhhh---chhhHhhhHHHHHHHHhcCCC-chHHHHHHHHhHHHHh--hhchhhhHHHHHHHHHHHhccchhHHHHHHH
Q 016814          179 QVNQVI---GIDLLSQSLLPAIVELAEDRH-WRVRLAIIEYIPLLAS--QLGVGFFDDKLGALCMQWLQDKVYSIRDAAA  252 (382)
Q Consensus       179 ~~~~~~---~~~~~~~~llp~l~~~~~d~~-~~vr~~~~~~l~~l~~--~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~  252 (382)
                      .+.++-   -.+.....++..+..++...+ ...-..++..+..+..  .++.+.+. .++..+-...+  ..+..+.+.
T Consensus       160 nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~-~~i~vLCsi~~--~~~l~~~~w  236 (464)
T PF11864_consen  160 NVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLS-PCIEVLCSIVN--SVSLCKPSW  236 (464)
T ss_pred             HHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHH-HHHHHHhhHhc--ccccchhHH
Confidence            222211   112223556666666654433 3333566777776654  22332222 23333332222  225666777


Q ss_pred             HHHHHHHHHhChHHHHhhhHHHHHhhh--cC----cchHHHHHHHHHHHHhccccChh----hhh--hhhHHHHHhhccC
Q 016814          253 NNLKRLAEEFGPEWAMQHITPQVLEMI--NN----PHYLYRMTILRAISLLAPVMGSE----ITC--SRLLPVVINASKD  320 (382)
Q Consensus       253 ~~l~~~~~~~~~~~~~~~l~~~l~~~l--~~----~~~~~r~~a~~~l~~l~~~~~~~----~~~--~~~l~~l~~~l~d  320 (382)
                      +.+..+++....    ...+..+...+  .+    ++..+-..|+..++.+.-..+.+    ...  ..++|.+...++.
T Consensus       237 ~~m~nL~~S~~g----~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~  312 (464)
T PF11864_consen  237 RTMRNLLKSHLG----HSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKS  312 (464)
T ss_pred             HHHHHHHcCccH----HHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhC
Confidence            777777753322    22444555555  22    23455568888888876555322    112  3489999999998


Q ss_pred             CCccHHHHHHHHHHHHh-hhhhH
Q 016814          321 RVPNIKFNVAKVLQSLI-PIVDQ  342 (382)
Q Consensus       321 ~~~~vR~~a~~~l~~i~-~~~~~  342 (382)
                      +++.|=...+..+..+. ..++.
T Consensus       313 ~~~~v~~eIl~~i~~ll~~~~~~  335 (464)
T PF11864_consen  313 NSPRVDYEILLLINRLLDGKYGR  335 (464)
T ss_pred             CCCeehHHHHHHHHHHHhHhhhh
Confidence            87777777777777666 44443

>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=87.15  E-value=24  Score=32.46  Aligned_cols=101  Identities=14%  Similarity=0.105  Sum_probs=56.8

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----H
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----D  148 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~  148 (382)
                      ++..++.....--.+..|...+++|.-+-.  .+.++    .++..+..++.-.+...|..+...+...+..++.    +
T Consensus        20 el~dLL~~~~~~lp~~Lr~~i~~~LiLLrNk~~i~~~----~LL~lff~l~~~~dk~lRkllythiv~~Ikn~n~~~kn~   95 (616)
T KOG2229|consen   20 ELKDLLRTNHTVLPPELREKIVKALILLRNKNLIVAE----DLLELFFPLLRCGDKNLRKLLYTHIVTTIKNINKKHKND   95 (616)
T ss_pred             HHHHHHHhccccCCHHHHHHHHHHHHHHhccCcCCHH----HHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHhhcccc
Confidence            344444443334457888888888765532  23344    4556666666556666788777666655543321    1


Q ss_pred             hHHHhhHHHHHHhhcCCChHHHHHHHHhhHH
Q 016814          149 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ  179 (382)
Q Consensus       149 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~  179 (382)
                      .....+-.++..++.++++.--..++..+..
T Consensus        96 klnkslq~~~fsml~~~d~~~ak~a~~~~~e  126 (616)
T KOG2229|consen   96 KLNKSLQAFMFSMLDQSDSTAAKMALDTMIE  126 (616)
T ss_pred             hHHHHHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence            2234555677778887776543334333333

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=86.59  E-value=2.9  Score=38.41  Aligned_cols=109  Identities=9%  Similarity=0.098  Sum_probs=79.1

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHH---HhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAE---EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--  304 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~---~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--  304 (382)
                      ..+...+.+.|.+|+..|...+...+-.++-   .+|..+..+.++..+.+++..++...|....+.+-.+.-++..+  
T Consensus       430 ~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ek  509 (743)
T COG5369         430 YPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEK  509 (743)
T ss_pred             cchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhh
Confidence            3567777888888777776666666555543   23445567789999999998888888888888888877666554  


Q ss_pred             -hhhhhh-HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          305 -ITCSRL-LPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       305 -~~~~~~-l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                       .+..++ +..++.+.+|+...|...+++.+..+..
T Consensus       510 f~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc  545 (743)
T COG5369         510 FKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTC  545 (743)
T ss_pred             hhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccc
Confidence             122222 4567888999999999999999887754

>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length

Probab=86.48  E-value=12  Score=30.03  Aligned_cols=29  Identities=21%  Similarity=0.302  Sum_probs=18.1

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      .++..+.+...+.=.+||..|..++..+.
T Consensus         7 ~~~~~llrqa~EKiDrvR~~A~~~l~~ll   35 (193)
T PF12612_consen    7 QIIGGLLRQAAEKIDRVREVAGKCLQRLL   35 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444445555556677777777777776

There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=86.36  E-value=30  Score=32.68  Aligned_cols=104  Identities=11%  Similarity=-0.013  Sum_probs=55.8

Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh----hhhhhh
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE----ITCSRL  310 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~  310 (382)
                      .+.....|-++.+|..+...++.....++.-.+.-..+...=..|.|.+..+|......+..+....+..    .+.+.+
T Consensus       279 vfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~eRF  358 (740)
T COG5537         279 VFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVERF  358 (740)
T ss_pred             HHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence            3445556666777777777777666654322111122222333455666677777777776665544332    233444


Q ss_pred             HHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          311 LPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       311 l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      ...++.++.-...-||..+++.+..+..
T Consensus       359 k~rILE~~r~D~d~VRi~sik~l~~lr~  386 (740)
T COG5537         359 KDRILEFLRTDSDCVRICSIKSLCYLRI  386 (740)
T ss_pred             HHHHHHHHhhccchhhHHHHHHHHHHHH
Confidence            4444554433333377777777766654

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.93  E-value=19  Score=30.07  Aligned_cols=116  Identities=16%  Similarity=0.218  Sum_probs=62.6

Q ss_pred             chHHHHHHhcCCCcHH----HHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCc--hHHHHHHHHHHHhhccc--cC
Q 016814           75 DLVPAYVRLLRDNEAE----VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS--QHVRSALASVIMGMAPL--LG  146 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~----VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~--~~vr~~a~~~l~~l~~~--~~  146 (382)
                      .-+|.++++++-++..    .-....+.++.+....+.     .=+..+.++++|++  ..||.++++++..++..  ..
T Consensus        73 ~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~-----G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~  147 (249)
T PF06685_consen   73 RALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD-----GDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPIS  147 (249)
T ss_pred             hhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC-----CCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4577788777543321    112233333333332222     12356667777654  58999999999988743  23


Q ss_pred             hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcC
Q 016814          147 KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED  203 (382)
Q Consensus       147 ~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d  203 (382)
                      ++...+.+..++...++.....+-...+..+..+.   .     ..++|.+.++..+
T Consensus       148 Re~vi~~f~~ll~~~l~~~~~~~~~~Lv~~~~dL~---~-----~EL~~~I~~~f~~  196 (249)
T PF06685_consen  148 REEVIQYFRELLNYFLERNPSFLWGSLVADICDLY---P-----EELLPEIRKAFED  196 (249)
T ss_pred             HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHhcC---H-----HHhHHHHHHHHHc
Confidence            44455566666666565544443333333333322   2     5667777766543

The function of this family is unknown.

>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]

Probab=85.81  E-value=9.1  Score=33.73  Aligned_cols=99  Identities=13%  Similarity=0.209  Sum_probs=68.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPC  118 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~  118 (382)
                      ....++|.+=.-+|..       ++.+ ......+..+.+.++..++.|...|+..+..+...|+....    ...+...
T Consensus        20 ~nT~enW~~IlDvCD~-------v~~~~~~~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~e   92 (462)
T KOG2199|consen   20 KNTSENWSLILDVCDK-------VGSDPDGGKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTE   92 (462)
T ss_pred             ccccccHHHHHHHHHh-------hcCCCcccHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHH
Confidence            3345566654444444       3332 22345788999999999999999999999999988876532    3356667


Q ss_pred             hhhhcC-CCchHHHHHHHHHHHhhccccChHh
Q 016814          119 VKELSS-DSSQHVRSALASVIMGMAPLLGKDA  149 (382)
Q Consensus       119 l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~~  149 (382)
                      +..++. ...+.|+......+..++..+.++.
T Consensus        93 l~al~~~~~h~kV~~k~~~lv~eWsee~K~Dp  124 (462)
T KOG2199|consen   93 LRALIESKAHPKVCEKMRDLVKEWSEEFKKDP  124 (462)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHHHHHHhccCc
Confidence            777777 4567788888888888877665443

>KOG1932 consensus TATA binding protein associated factor [Transcription]

Probab=85.79  E-value=33  Score=34.92  Aligned_cols=58  Identities=24%  Similarity=0.198  Sum_probs=39.7

Q ss_pred             hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHh
Q 016814           40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRI  105 (382)
Q Consensus        40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~  105 (382)
                      ...++=.|.|...+..|++.+..+-..        ..-..+.+.+.|+.  +.||.+|+.+|...+..
T Consensus       647 w~~QLr~drDVvAQ~EAI~~le~~p~~--------~s~~~L~rtl~der~FyrIR~~Aa~aLak~a~~  706 (1180)
T KOG1932|consen  647 WVYQLRQDRDVVAQMEAIESLEALPST--------ASRSALTRTLEDERYFYRIRIAAAFALAKTANG  706 (1180)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHcCCcc--------hhHHHHHHHHhhcchhhHHHHHHHHHHHHhhcc
Confidence            344555788877788888887754321        12255566666664  78999999999988765

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.15  E-value=54  Score=34.50  Aligned_cols=33  Identities=27%  Similarity=0.360  Sum_probs=25.8

Q ss_pred             hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .++.++..+.....|.++++..+++.++..+..
T Consensus      1100 vwe~ll~flkrl~s~~s~e~slsai~~~qell~ 1132 (1610)
T KOG1848|consen 1100 VWEELLQFLKRLHSDISPEISLSAIKALQELLF 1132 (1610)
T ss_pred             HHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHH
Confidence            467777777788888888888888888877654

>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins

Probab=85.13  E-value=9.4  Score=25.87  Aligned_cols=69  Identities=14%  Similarity=0.113  Sum_probs=51.1

Q ss_pred             hhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhhhhhHHHHH--HhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          306 TCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       306 ~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~~~~~~~~~--~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                      +...++.++... ...++.++|...++++..+....+...-.  ..++..+.....|.+.++-..|.+.+..
T Consensus        14 fQ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~   85 (86)
T PF09324_consen   14 FQKDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL   85 (86)
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence            556666666665 45557789999999999999877654322  5677777777888899988888887764

It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].

>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]

Probab=84.65  E-value=36  Score=32.15  Aligned_cols=142  Identities=14%  Similarity=0.109  Sum_probs=88.0

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----HHH
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----TIE  152 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----~~~  152 (382)
                      -..++....|-++.+|..+...++..+...+.-.+.-..+...-=.+.|.+..||....+.+..++...+...    +.+
T Consensus       277 dsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e  356 (740)
T COG5537         277 DSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE  356 (740)
T ss_pred             HHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            3445566688888999999888888777665554444444555557889999999999999999887665322    234


Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  221 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  221 (382)
                      .+...+.+++.-...-||..+++.+..+.....-+   ..-+-.+..+.-|..++-|....+.+..+++
T Consensus       357 RFk~rILE~~r~D~d~VRi~sik~l~~lr~lg~L~---~SeIlIvsscmlDi~pd~r~~~~E~v~~icK  422 (740)
T COG5537         357 RFKDRILEFLRTDSDCVRICSIKSLCYLRILGVLS---SSEILIVSSCMLDIIPDSRENIVESVESICK  422 (740)
T ss_pred             HHHHHHHHHHhhccchhhHHHHHHHHHHHHhcccc---hhHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            44444555543333349999998888765432111   2233344445556666644444444444443

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=84.52  E-value=22  Score=29.47  Aligned_cols=108  Identities=13%  Similarity=0.075  Sum_probs=64.1

Q ss_pred             HHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc-cccChh
Q 016814          231 KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLA-PVMGSE  304 (382)
Q Consensus       231 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~-~~~~~~  304 (382)
                      .+.|.+....++ +....|..++..++.+++.-..+.    ....++|.++......+...+..|...++.+. .-.|..
T Consensus       124 ylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~  203 (293)
T KOG3036|consen  124 YLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLY  203 (293)
T ss_pred             hhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHH
Confidence            355555554444 456788888888888888654432    34568888888888888778888888887763 333322


Q ss_pred             h---------hhhhhHH-HHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          305 I---------TCSRLLP-VVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       305 ~---------~~~~~l~-~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      +         ....++. .+.++.+.+.+.+=..+++..-.+..
T Consensus       204 YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd  247 (293)
T KOG3036|consen  204 YICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD  247 (293)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            1         1122222 33444555555544555555544443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=84.17  E-value=1.4  Score=24.46  Aligned_cols=29  Identities=31%  Similarity=0.287  Sum_probs=18.9

Q ss_pred             hHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          348 TIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      ..+|.|.+++.+++.+++..|+.++..++
T Consensus        12 g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185       12 GGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            35566666666666777777777776653

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.76  E-value=38  Score=31.68  Aligned_cols=77  Identities=12%  Similarity=0.070  Sum_probs=52.6

Q ss_pred             HHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhh
Q 016814          260 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       260 ~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~  339 (382)
                      -.+|.+.-.+.++..+...+--.+..+|...-.+.+.+...-+    .-.++..+-+..+|..-++-.+++.+++.+...
T Consensus       631 iamGedig~eMvlRhf~h~mhyg~~hiR~~~PLa~gils~SnP----Qm~vfDtL~r~shd~dl~v~~ntIfamGLiGAG  706 (881)
T COG5110         631 IAMGEDIGSEMVLRHFSHSMHYGSSHIRSVLPLAYGILSPSNP----QMNVFDTLERSSHDGDLNVIINTIFAMGLIGAG  706 (881)
T ss_pred             hhhcchhhHHHHHHHhhhHhhcCcHHHHHHHHHHHhcccCCCc----chHHHHHHHHhccccchhHHHHHHHHhhccccC
Confidence            3455554445555565555555677888887777776653222    246777888889998899999999999888654


Q ss_pred             h
Q 016814          340 V  340 (382)
Q Consensus       340 ~  340 (382)
                      -
T Consensus       707 T  707 (881)
T COG5110         707 T  707 (881)
T ss_pred             c
Confidence            3

>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]

Probab=83.28  E-value=43  Score=31.93  Aligned_cols=52  Identities=23%  Similarity=0.199  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHh
Q 016814           54 YMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI  105 (382)
Q Consensus        54 ~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~  105 (382)
                      ..|++++-.+....+.-.+.+.++..++.+.+|+...++..+++++..+.+.
T Consensus       303 ~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~  354 (704)
T KOG2153|consen  303 QVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFEN  354 (704)
T ss_pred             HHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcC
Confidence            4555666666666666666677899999999999999999999999887653

>cd07064 AlkD_like_1 A new structural DNA glycosylase containing HEAT-like repeats

Probab=82.64  E-value=24  Score=28.63  Aligned_cols=125  Identities=14%  Similarity=0.118  Sum_probs=73.3

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHH-HHHHHHHHhCCcccccchHHHHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVAN-QLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~-~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      |.+++.-+.|..|+..+...-+..+..     -++.+..++.+. +|.+=-..+. .++.+...      .....+.+.+
T Consensus        54 Lw~~~~~E~r~~al~~l~~~~~~~~~~-----~~~~~~~~l~~~~~Wd~vD~~~~~i~g~~~~~------~~~~~~~l~~  122 (208)
T cd07064          54 LWQQPEREYQYVAIDLLRKYKKFLTPE-----DLPLLEELITTKSWWDTVDSLAKVVGGILLAD------YPEFEPVMDE  122 (208)
T ss_pred             HHcchHHHHHHHHHHHHHHHHhcCCHH-----HHHHHHHHHcCCchHHHHHHHHHHHhHHHHhC------ChhHHHHHHH
Confidence            444444466666766666544444332     234444454433 4555443333 33443221      1234677788


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      ...|++.=.|.+|+-+...+.+....    +.+...+...+.|+...|+.+...+|..++..
T Consensus       123 W~~s~~~W~rR~ai~~~l~~~~~~~~----~~l~~~~~~~~~d~e~fI~KAiGW~LRe~~k~  180 (208)
T cd07064         123 WSTDENFWLRRTAILHQLKYKEKTDT----DLLFEIILANLGSKEFFIRKAIGWALREYSKT  180 (208)
T ss_pred             HHcCCcHHHHHHHHHHHHHHHHccCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHhcc
Confidence            88888755555555454445444333    34566777889999999999999999999875

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity. The known structures for members of this fa

>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1

Probab=82.23  E-value=15  Score=26.05  Aligned_cols=58  Identities=16%  Similarity=0.051  Sum_probs=45.4

Q ss_pred             hHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          207 RVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       207 ~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      .-|..+++.++.+.+..|+..  +.+++.-.+...+..  ++.|..+++++..++..+..+.
T Consensus        30 ~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i~~L~~~~   89 (107)
T smart00802       30 NEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLIKTLKEEE   89 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHHhCCHHH
Confidence            558899999999988666432  346777777777764  5699999999999999988754

Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.21  E-value=13  Score=34.27  Aligned_cols=99  Identities=7%  Similarity=0.130  Sum_probs=68.8

Q ss_pred             HHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHH
Q 016814          238 QWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV  313 (382)
Q Consensus       238 ~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~  313 (382)
                      ..+.+++|..-...+..+..--.  +    ....+..+.+.+.+++..+..-|+..|..+.++||..+    ..+.+++.
T Consensus        12 ~~l~~pDWa~NleIcD~IN~~~~--~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e   85 (470)
T KOG1087|consen   12 ESLAEPDWALNLEICDLINSTEG--G----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE   85 (470)
T ss_pred             ccccCccHHHHHHHHHHHhcCcc--C----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            45667777665544444322111  1    13567778888888888888888888888899999753    34677777


Q ss_pred             HHhhccCC--CccHHHHHHHHHHHHhhhhhH
Q 016814          314 VINASKDR--VPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       314 l~~~l~d~--~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      .+...+..  ...||..++..|..+...++.
T Consensus        86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~  116 (470)
T KOG1087|consen   86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG  116 (470)
T ss_pred             HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence            76666554  456999999999999988765

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=81.82  E-value=39  Score=30.40  Aligned_cols=69  Identities=9%  Similarity=0.115  Sum_probs=50.0

Q ss_pred             hhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh-hhh--hhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          270 HITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE-ITC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       270 ~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~-~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .++..+..++..++ +.+-..|+.=++.+.+.++.. ...  -.--..+.+++++++++||..|+.++-.+..
T Consensus       366 ellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  366 ELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            47777777776555 667777888888888777643 121  1234467788999999999999999887653

>cd06561 AlkD_like A new structural DNA glycosylase

Probab=81.58  E-value=25  Score=28.06  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=51.3

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      +.+.+...|++.-+|.+++..+......   +...+.+++.+..+..|++..||.++..+|..++..
T Consensus       108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~---~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~  171 (197)
T cd06561         108 DLLEEWAKSENEWVRRAAIVLLLRLIKK---ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK  171 (197)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHHHHHh---cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh
Confidence            7778888888888888887777666554   223456788888999999999999999999999875

This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=81.12  E-value=10  Score=24.72  Aligned_cols=54  Identities=17%  Similarity=0.171  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHhccc-cChhhhh-hhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhh
Q 016814          287 RMTILRAISLLAPV-MGSEITC-SRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       287 r~~a~~~l~~l~~~-~~~~~~~-~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      ..+++.+++.++.. .|..... ..+++.+.+.. +++...+|..|..+|+.++...
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~   60 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTE   60 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCH
Confidence            35677888887654 4444332 35777777765 4667778888888888887643

>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.36  E-value=24  Score=32.62  Aligned_cols=99  Identities=12%  Similarity=0.159  Sum_probs=73.5

Q ss_pred             hhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHH----HHHhhhHh
Q 016814           43 NFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPEL----AIQHILPC  118 (382)
Q Consensus        43 ~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~----~~~~il~~  118 (382)
                      ..+.++||..=...|..+..      ......+.+-.+.+.+++.++.|...|+..|..+++.||...    ....+++-
T Consensus        12 ~~l~~pDWa~NleIcD~IN~------~~~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~e   85 (470)
T KOG1087|consen   12 ESLAEPDWALNLEICDLINS------TEGGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNE   85 (470)
T ss_pred             ccccCccHHHHHHHHHHHhc------CccCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            35578898888777777652      111123678888888898888999999999998999888763    34456676


Q ss_pred             hhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814          119 VKELSSDS--SQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       119 l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      ++...+..  +..||..++..|..+.+.++.
T Consensus        86 mVk~~k~~~~~~~Vr~kiL~LI~~W~~af~~  116 (470)
T KOG1087|consen   86 MVKRPKNKPRDLKVREKILELIDTWQQAFCG  116 (470)
T ss_pred             HHhccccCCcchhHHHHHHHHHHHHHHHccC
Confidence            66666554  568999999999999887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		1e-123
2iae_A	589	Crystal Structure Of A Protein Phosphatase 2a (Pp2a		7e-06
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		1e-123
2ie3_A	589	Structure Of The Protein Phosphatase 2a Core Enzyme		7e-06
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		1e-123
1b3u_A	588	Crystal Structure Of Constant Regulatory Domain Of		7e-06
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		1e-123
3dw8_A	582	Structure Of A Protein Phosphatase 2a Holoenzyme Wi		8e-06
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		1e-123
3fga_A	588	Structural Basis Of Pp2a And Sgo Interaction Length		8e-06
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		1e-123
2pkg_A	580	Structure Of A Complex Between The A Subunit Of Pro		9e-06
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		1e-117
2nyl_A	582	Crystal Structure Of Protein Phosphatase 2a (Pp2a)		4e-06
3c5w_A	232	Complex Between Pp2a-Specific Methylesterase Pme-1		5e-64
1ibr_D	462	Complex Of Ran With Importin Beta Length = 462		4e-04
1qgk_A	876	Structure Of Importin Beta Bound To The Ibb Domain		4e-04
2p8q_A	876	Crystal Structure Of Human Importin Beta Bound To T		4e-04
1m5n_S	485	Crystal Structure Of Heat Repeats (1-11) Of Importi		4e-04
2qna_A	762	Crystal Structure Of Human Importin-Beta (127-876)		4e-04
1ukl_A	876	Crystal Structure Of Importin-Beta And Srebp-2 Comp		9e-04

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 327
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

>pdb|2IAE|A Chain A, Crystal Structure Of A Protein Phosphatase 2a (Pp2a) Holoenzyme. Length = 589

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 141 MAPLLGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 198
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 199 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +L+ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318
           + E  P     H  P V  +     +  R +     S+  P + S +  + L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378
            D  P ++   A  L     +++   V+  I P    L  D    VR  A +A  +I  +
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 379 M 379
           +
Sbjct: 235 L 235

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score =  437 bits (1123), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 208 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 267
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 268 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 327
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 328 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 387
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 388 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 447
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 448 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 507
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 508 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 567
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 568 TQDQDVDVKYFAQEAL 583

>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound To Tumor- Inducing Toxins Length = 589

Iteration: 1
 Score = 48.5 bits (114), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/241 (22%), Positives = 94/241 (39%), Gaps = 8/241 (3%)
Query: 141 MAPLLGKDATIEQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV 198
           MA   G D+    L PI   +  L++E   +RLN I KL  +   +G++     LLP + 
Sbjct: 1   MAAADGDDS----LYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLT 56
Query: 199 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL 258
           +   D    V LA+ E +    + +G   +   L          +   +RD A  +L+ +
Sbjct: 57  DTIYDED-EVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAI 115
Query: 259 AEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS 318
           + E  P     H  P V  +     +  R +     S+  P + S +  + L     N  
Sbjct: 116 SHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLC 174
Query: 319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV 378
            D  P ++   A  L     +++   V+  I P    L  D    VR  A +A  +I  +
Sbjct: 175 SDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQL 234
Query: 379 M 379
           +
Sbjct: 235 L 235

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 567 TQDQDVDVKYFAQEAL 582

>pdb|1B3U|A Chain A, Crystal Structure Of Constant Regulatory Domain Of Human Pp2a, Pr65alpha Length = 588

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 201 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 260
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 261 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 320
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 321 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 380
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 381 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 440
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 441 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 500
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 501 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 560
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 561 TQDQDVDVKYFAQEAL 576

>pdb|3DW8|A Chain A, Structure Of A Protein Phosphatase 2a Holoenzyme With B55 Subunit Length = 582

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 183
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 184 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 228

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score =  436 bits (1122), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMTQIL 326
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 567 TQDQDVDVKYFAQEAL 582

>pdb|3FGA|A Chain A, Structural Basis Of Pp2a And Sgo Interaction Length = 588

Iteration: 1
 Score = 48.1 bits (113), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 189
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score =  436 bits (1121), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 217/376 (57%), Positives = 285/376 (75%), Gaps = 4/376 (1%)
Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 199 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 258
Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +    + +  IL
Sbjct: 259 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 318
Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 319 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 378
Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 379 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 438
Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 439 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 498
Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 499 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 558
Query: 357 TEDPDVDVRFFATQAI 372
           T+D DVDV++FA +A+
Sbjct: 559 TQDQDVDVKYFAQEAL 574

>pdb|2PKG|A Chain A, Structure Of A Complex Between The A Subunit Of Protein Phosphatase 2a And The Small T Antigen Of Sv40 Length = 580

Iteration: 1
 Score = 48.1 bits (113), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 4   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 62
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 63  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 122
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 123 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAAASKLG 181
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 182 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 226

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score =  419 bits (1077), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/370 (57%), Positives = 273/370 (73%), Gaps = 4/370 (1%)
Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           S++QDSVRLLAVE C  + +LL  +D  A + P +   ++DKSWRVRY VA++  EL +A
Sbjct: 207 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVXPTLRQAAEDKSWRVRYXVADKFTELQKA 266
Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKEL 122
           VGPE T+ DLVPA+  L +D EAEVR AA+ KV +FC  L+ +    +    ILPC+KEL
Sbjct: 267 VGPEITKTDLVPAFQNLXKDCEAEVRAAASHKVKEFCENLSADCRENVIXSQILPCIKEL 326
Query: 123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
            SD++QHV+SALASVI G++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct: 327 VSDANQHVKSALASVIXGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 386
Query: 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
           VIGI  LSQSLLPAIVELAED  WRVRLAIIEY PLLA QLGV FFD+KL +LC  WL D
Sbjct: 387 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYXPLLAGQLGVEFFDEKLNSLCXAWLVD 446
Query: 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
            VY+IR+AA +NLK+L E+FG EWA   I P+VL    +P+YL+R T L  I++L+ V G
Sbjct: 447 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAXSGDPNYLHRXTTLFCINVLSEVCG 506
Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
            +IT    LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct: 507 QDITTKHXLPTVLRXAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 566
Query: 363 DVRFFATQAI 372
           DV++FA +A+
Sbjct: 567 DVKYFAQEAL 576

>pdb|2NYL|A Chain A, Crystal Structure Of Protein Phosphatase 2a (Pp2a) Holoenzyme With The Catalytic Subunit Carboxyl Terminus Truncated Length = 582

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 88/225 (39%), Gaps = 2/225 (0%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++     LLP + +   D    V LA+ E
Sbjct: 6   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 64
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
            +    + +G   +   L          +   +RD A  +L+ ++ E  P     H  P 
Sbjct: 65  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 124
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           V  +     +  R +     S+  P + S +  + L     N   D  P ++   A  L 
Sbjct: 125 VKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPXVRRAAASKLG 183
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
               +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 184 EFAKVLELDNVKSEIIPXFSNLASDEQDSVRLLAVEACVNIAQLL 228

>pdb|3C5W|A Chain A, Complex Between Pp2a-Specific Methylesterase Pme-1 And Pp2a Core Enzyme Length = 232

Iteration: 1
 Score =  241 bits (615), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 116/218 (53%), Positives = 159/218 (72%)
Query: 155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIE 214
           + + +  L++E   +RLN I KL  +   +G++ LSQSLLPAIVELAED  WRVRLAIIE
Sbjct: 9   IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERLSQSLLPAIVELAEDAKWRVRLAIIE 68
Query: 215 YIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ 274
           Y+PLLA QLGV FFD+KL +LCM WL D VY+IR+AA +NLK+L E+FG EWA   I P+
Sbjct: 69  YMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPK 128
Query: 275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQ 334
           VL M  +P+YL+RMT L  I++L+ V G +IT   +LP V+  + D V N++FNVAK LQ
Sbjct: 129 VLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQ 188
Query: 335 SLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 372
            + PI+D S ++  ++P L +LT+D DVDV++FA +A+
Sbjct: 189 KIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEAL 226

>pdb|1IBR|D Chain D, Complex Of Ran With Importin Beta Length = 462

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1QGK|A Chain A, Structure Of Importin Beta Bound To The Ibb Domain Of Importin Alpha Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2P8Q|A Chain A, Crystal Structure Of Human Importin Beta Bound To The Snurportin1 Ibb- Domain Length = 876

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|1M5N|S Chain S, Crystal Structure Of Heat Repeats (1-11) Of Importin B Bound To The Non-Classical Nls(67-94) Of Pthrp Length = 485

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 419
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR  AA  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTAAWTVGRICELL-PEAAINDV 447

>pdb|2QNA|A Chain A, Crystal Structure Of Human Importin-Beta (127-876) In Complex With The Ibb-Domain Of Snurportin1 (1-65) Length = 762

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  W  RY  A  +   C   GPEP+++       +P  + L++D
Sbjct: 237 DIVPHVLPFIKEHIKNPDW--RYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKD 294
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR  AA  V + C +L PE AI  +
Sbjct: 295 PSVVVRDTAAWTVGRICELL-PEAAINDV 322

>pdb|1UKL|A Chain A, Crystal Structure Of Importin-Beta And Srebp-2 Complex Length = 876

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 32  DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM-----DLVPAYVRLLRD 86
           D V H+LP I    ++  WR R         + E  GPEP ++       +P  + L++D
Sbjct: 362 DIVPHVLPFIKEHIKNPDWRYRDAAVMAFGSILE--GPEPNQLKPLVIQAMPTLIELMKD 419
Query: 87  NEAEVRIAAAGKVTKFCRILNPELAIQHI 115
               VR   A  V + C +L PE AI  +
Sbjct: 420 PSVVVRDTTAWTVGRICELL-PEAAINDV 447

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	1e-122
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-59
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-57
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	4e-45
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-44
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-39
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-36
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	3e-36
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	2e-31
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	6e-10
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-19
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	1e-10
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	6e-08
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	8e-18
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-17
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	1e-06
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-13
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	2e-09
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	1e-08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-08
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	6e-04
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	2e-12
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-11
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	1e-10
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	2e-11
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	1e-08
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	4e-07
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-04
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	6e-11
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	3e-08
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	1e-05
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	2e-05
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	5e-11
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	2e-09
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	9e-04
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-11
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	1e-06
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	7e-05
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	7e-09
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	9e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-08
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	4e-07
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	5e-06
1qgr_A	876	Protein (importin beta subunit); transport recepto	1e-06
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	2e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-06
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	6e-05
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	4e-05
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	2e-04
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	2e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	6e-04
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	7e-04

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  363 bits (933), Expect = e-122
 Identities = 216/373 (57%), Positives = 283/373 (75%), Gaps = 4/373 (1%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++  EL +A
Sbjct: 213 SDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKA 272

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKEL 122
           VGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +      +  ILPC+KEL
Sbjct: 273 VGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKEL 332

Query: 123 SSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ 182
            SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS LD VN+
Sbjct: 333 VSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE 392

Query: 183 VIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD 242
           VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LCM WL D
Sbjct: 393 VIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVD 452

Query: 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
            VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++L+ V G
Sbjct: 453 HVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCG 512

Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
            +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +LT+D DV
Sbjct: 513 QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDV 572

Query: 363 DVRFFATQAIQSI 375
           DV++FA +A+  +
Sbjct: 573 DVKYFAQEALTVL 585

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  200 bits (510), Expect = 4e-59
 Identities = 83/377 (22%), Positives = 157/377 (41%), Gaps = 5/377 (1%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
             D+D V L   E       L+   + V  +LP + + +  +   VR      L  +   
Sbjct: 58  IYDEDEVLLALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHE 117

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
             P       VP   RL   +    R +A G  +     ++  +    +    + L SD 
Sbjct: 118 HSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAV-KAELRQYFRNLCSDD 176

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
           +  VR A AS +   A +L  D    +++P+F +L  DE   VRL  +     + Q++  
Sbjct: 177 TPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ 236

Query: 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 246
           + L   ++P + + AED+ WRVR  + +    L   +G       L       ++D    
Sbjct: 237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAE 296

Query: 247 IRDAAANNLKRLAEEFGPEWA----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
           +R AA++ +K   E    +      M  I P + E++++ +   +  +   I  L+P++G
Sbjct: 297 VRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG 356

Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
            + T   LLP+ +   KD  P ++ N+   L  +  ++    + +++ P +VEL ED   
Sbjct: 357 KDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKW 416

Query: 363 DVRFFATQAIQSIDHVM 379
            VR    + +  +   +
Sbjct: 417 RVRLAIIEYMPLLAGQL 433

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  196 bits (498), Expect = 2e-57
 Identities = 82/383 (21%), Positives = 156/383 (40%), Gaps = 5/383 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           ++      D  + R  A    +     +      A +     N   D +  VR   A++L
Sbjct: 130 LVKRLAGGDWFTSRTSACGLFSVCYPRVSSA-VKAELRQYFRNLCSDDTPMVRRAAASKL 188

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 120
            E  + +  +  + +++P +  L  D +  VR+ A        ++L  E     ++P ++
Sbjct: 189 GEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLR 248

Query: 121 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 180
           + + D S  VR  +A     +   +G + T   L+P F +L+KD   +VR     K+ + 
Sbjct: 249 QAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEF 308

Query: 181 NQVIGIDLLS----QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
            + +  D         +LP I EL  D +  V+ A+   I  L+  LG     + L  L 
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           +  L+D+   +R    +NL  + E  G     Q + P ++E+  +  +  R+ I+  + L
Sbjct: 369 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           LA  +G E    +L  + +    D V  I+      L+ L+    +     TI P ++ +
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488

Query: 357 TEDPDVDVRFFATQAIQSIDHVM 379
           + DP+   R      I  +  V 
Sbjct: 489 SGDPNYLHRMTTLFCINVLSEVC 511

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  162 bits (412), Expect = 4e-45
 Identities = 53/278 (19%), Positives = 119/278 (42%)

Query: 21  CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80
           C  L         ++ ILP I     D +  V+  +A+ +  L   +G + T   L+P +
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368

Query: 81  VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 140
           +  L+D   EVR+     +     ++      Q +LP + EL+ D+   VR A+   +  
Sbjct: 369 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

Query: 141 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200
           +A  LG +   E+L  + ++ L D    +R    S L ++ +  G +    +++P ++ +
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488

Query: 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260
           + D ++  R+  +  I +L+   G       +    ++   D V ++R   A +L+++  
Sbjct: 489 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

Query: 261 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 298
                     + P + ++  +     +     A+++L+
Sbjct: 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  160 bits (407), Expect = 2e-44
 Identities = 76/373 (20%), Positives = 142/373 (38%), Gaps = 6/373 (1%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
            N+   +RL +++  + +   L  +   + +LP + +   D+   V   +A QL      
Sbjct: 20  RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDE-DEVLLALAEQLGTFTTL 78

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
           VG       L+P    L    E  VR  A   +       +P     H +P VK L+   
Sbjct: 79  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD 138

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
               R++   +     P +   A   +L   F +L  D+ P VR    SKL +  +V+ +
Sbjct: 139 WFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197

Query: 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 246
           D +   ++P    LA D    VRL  +E    +A  L     +  +     Q  +DK + 
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR 257

Query: 247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 306
           +R   A+    L +  GPE     + P    ++ +     R      +      + ++  
Sbjct: 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317

Query: 307 ----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
                S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   
Sbjct: 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECP 377

Query: 363 DVRFFATQAIQSI 375
           +VR      +  +
Sbjct: 378 EVRLNIISNLDCV 390

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  147 bits (371), Expect = 2e-39
 Identities = 59/342 (17%), Positives = 124/342 (36%), Gaps = 6/342 (1%)

Query: 38  LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 97
           + V+++  +++  ++R     +L  +  A+G E TR +L+P     + D + EV +A A 
Sbjct: 12  IAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAE 70

Query: 98  KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI 157
           ++  F  ++     +  +LP ++ L++     VR      +  ++            +P+
Sbjct: 71  QLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPL 130

Query: 158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIP 217
              L   ++   R +                +   L      L  D    VR A    + 
Sbjct: 131 VKRLAGGDWFTSRTSACGLFSVCYP-RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLG 189

Query: 218 LLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLE 277
             A  L +     ++  +      D+  S+R  A      +A+    E     + P + +
Sbjct: 190 EFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ 249

Query: 278 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLI 337
              +  +  R  +    + L   +G EIT + L+P   N  KD    ++   +  ++   
Sbjct: 250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFC 309

Query: 338 PIVDQSMVEKT----IRPCLVELTEDPDVDVRFFATQAIQSI 375
             +     E      I PC+ EL  D +  V+      I  +
Sbjct: 310 ENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGL 351

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  138 bits (349), Expect = 2e-36
 Identities = 49/212 (23%), Positives = 91/212 (42%)

Query: 9   DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG 68
           +   VRL  +     + +++  +     +LP IV  ++D  WRVR  +   +  L   +G
Sbjct: 375 ECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG 434

Query: 69  PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ 128
            E     L    +  L D+   +R AA   + K       E A   I+P V  +S D + 
Sbjct: 435 VEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNY 494

Query: 129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL 188
             R      I  ++ + G+D T + +LP  L +  D   +VR N+   L ++  ++    
Sbjct: 495 LHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNST 554

Query: 189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA 220
           L   + P + +L +D+   V+    E + +L+
Sbjct: 555 LQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  137 bits (347), Expect = 3e-36
 Identities = 56/301 (18%), Positives = 114/301 (37%), Gaps = 2/301 (0%)

Query: 75  DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 134
             +   +  LR+ + ++R+ +  K++     L  E     +LP + +   D    V  AL
Sbjct: 10  YPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLAL 68

Query: 135 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194
           A  +     L+G    +  LLP   SL   E   VR   +  L  ++       L    +
Sbjct: 69  AEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFV 128

Query: 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 254
           P +  LA    +  R +      +   ++       +L         D    +R AAA+ 
Sbjct: 129 PLVKRLAGGDWFTSRTSACGLFSVCYPRVS-SAVKAELRQYFRNLCSDDTPMVRRAAASK 187

Query: 255 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 314
           L   A+    +     I P    + ++     R+  + A   +A ++  E   + ++P +
Sbjct: 188 LGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTL 247

Query: 315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374
             A++D+   +++ VA     L   V   + +  + P    L +D + +VR  A+  ++ 
Sbjct: 248 RQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKE 307

Query: 375 I 375
            
Sbjct: 308 F 308

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score =  124 bits (313), Expect = 2e-31
 Identities = 49/253 (19%), Positives = 103/253 (40%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           S+    V+         L  +L   + + H+LP+ +   +D+   VR  + + L  + E 
Sbjct: 334 SDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEV 393

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
           +G       L+PA V L  D +  VR+A    +      L  E   + +         D 
Sbjct: 394 IGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDH 453

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
              +R A  S +  +    GK+     ++P  L++  D     R+  +  ++ +++V G 
Sbjct: 454 VYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQ 513

Query: 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYS 246
           D+ ++ +LP ++ +A D    VR  + + +  +   L       ++  +  +  QD+   
Sbjct: 514 DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVD 573

Query: 247 IRDAAANNLKRLA 259
           ++  A   L  L+
Sbjct: 574 VKYFAQEALTVLS 586

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 16/92 (17%), Positives = 37/92 (40%)

Query: 5   QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELC 64
              +     R+  +     L ++        H+LP ++  + D    VR+ VA  L ++ 
Sbjct: 488 MSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547

Query: 65  EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA 96
             +     + ++ P   +L +D + +V+  A 
Sbjct: 548 PILDNSTLQSEVKPILEKLTQDQDVDVKYFAQ 579

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 86.1 bits (213), Expect = 1e-19
 Identities = 44/227 (19%), Positives = 75/227 (33%), Gaps = 70/227 (30%)

Query: 38  LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAG 97
           +  +    +D    VR  VA +L         E            L+ D + EVRI  A 
Sbjct: 76  VEALTPLIRDSDEVVRRAVAYRL-------PRE--------QLSALMFDEDREVRITVAD 120

Query: 98  KVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVI-MGMAPLLGKD-------A 149
           ++                L  ++++++D    VR+ +   I  G      +D        
Sbjct: 121 RLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKL 165

Query: 150 TIEQL-LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV 208
             ++L       + +D  P+VR  + S+L                   ++EL  D  W V
Sbjct: 166 VAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDPDWTV 210

Query: 209 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNL 255
           RLA +E+  L A +                 L +    +R A A  L
Sbjct: 211 RLAAVEHASLEALRE----------------LDEPDPEVRLAIAGRL 241

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 50/190 (26%)

Query: 8   NDQDS-VRLLAVEGC--AALGKLLEPQD-----CVAHILP--VIVNFSQDKSWRVRYMVA 57
            D D  VR           L  L+  +D      VA  LP   +   + D+ + VR  V 
Sbjct: 84  RDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVV 143

Query: 58  -----NQLYELC----EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP 108
                 +L+         V     +     +   + +D E EVR   A ++         
Sbjct: 144 QRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG------- 196

Query: 109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD 168
                     + EL  D    VR A                  E      L  L +  P+
Sbjct: 197 --------DDLLELLHDPDWTVRLAAV----------------EHASLEALRELDEPDPE 232

Query: 169 VRLNIISKLD 178
           VRL I  +L 
Sbjct: 233 VRLAIAGRLG 242

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 Length = 244

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 37/291 (12%), Positives = 78/291 (26%), Gaps = 94/291 (32%)

Query: 91  VRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT 150
           V + +  ++ +F R  NP LA         +  +D     R+              + + 
Sbjct: 36  VAVESGRQIDRFFR-NNPHLA--------VQYLADPFWERRAIAV-----------RYSP 75

Query: 151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRL 210
           +E L P    L++D    VR  +  +L +                 +  L  D    VR+
Sbjct: 76  VEALTP----LIRDSDEVVRRAVAYRLPR---------------EQLSALMFDEDREVRI 116

Query: 211 AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN-----LKRLAEEFGPE 265
            + + +P                    Q   D+ Y +R           L R   +   +
Sbjct: 117 TVADRLP---------------LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMRDEDRQ 161

Query: 266 ---WAMQHITPQVLE-MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDR 321
                 + +  + L  M  +P    R  +   +                   ++    D 
Sbjct: 162 VRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRG---------------DDLLELLHDP 206

Query: 322 VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAI 372
              ++    +                      +   ++PD +VR      +
Sbjct: 207 DWTVRLAAVE----------------HASLEALRELDEPDPEVRLAIAGRL 241

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 81.2 bits (200), Expect = 8e-18
 Identities = 36/218 (16%), Positives = 78/218 (35%), Gaps = 13/218 (5%)

Query: 27  LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLL 84
           LL+P D ++ +     +  ++K W +R      L +L              LV A  +++
Sbjct: 6   LLDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVI 65

Query: 85  -RDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKELSSDSSQHVRSALASVIMGM 141
            +D+   +   A   +    + L    +      +P + E   +   +V +AL   I  +
Sbjct: 66  TKDSNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAI 125

Query: 142 APLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGIDLLSQSLLPAI 197
                   ++E      +  L ++ P V+      I++ L +         L + L  ++
Sbjct: 126 Y----ASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSL 181

Query: 198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGAL 235
           V+   +    VR +  E +  L   +G       L  +
Sbjct: 182 VKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADV 219

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 80.4 bits (198), Expect = 1e-17
 Identities = 32/199 (16%), Positives = 77/199 (38%), Gaps = 14/199 (7%)

Query: 186 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS---QLGVGFFDDKLGALCMQWLQD 242
           +D+LS+ +     +  E++ W +R   +E +  L +   +L  G +   + AL     +D
Sbjct: 10  VDILSK-MPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKD 68

Query: 243 KVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300
               +   A   L  LA+     ++       P +LE            ++ A+      
Sbjct: 69  SNVVLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKK----PNVVTALREAIDA 124

Query: 301 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE----KTIRPCLVEL 356
           + +  +       ++ +  ++ P++K   A  +   +     + +     K +   LV+ 
Sbjct: 125 IYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLLKLLTTSLVKT 184

Query: 357 TEDPDVDVRFFATQAIQSI 375
             +PD  VR  + +A+ ++
Sbjct: 185 LNEPDPTVRDSSAEALGTL 203

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Length = 242

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 16/165 (9%)

Query: 18  VEGCAALGKLLE-----PQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGP-- 69
            E    L KLL             ++  +    ++D +  +  M    L  L + +    
Sbjct: 33  KESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRF 92

Query: 70  EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 129
                  VP+ +   ++ +  V  A    +       + E   + I+  +     + +  
Sbjct: 93  SNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLS----NKNPS 148

Query: 130 VRSALASVIMGMAPLLGKDA----TIEQLLPIFLSLLKDEFPDVR 170
           V+S  A  I          A     ++ L    +  L +  P VR
Sbjct: 149 VKSETALFIARALTRTQPTALNKKLLKLLTTSLVKTLNEPDPTVR 193

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 68.2 bits (166), Expect = 2e-13
 Identities = 37/257 (14%), Positives = 97/257 (37%), Gaps = 11/257 (4%)

Query: 46  QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 105
           +++ + +R  +AN    L + +        ++   + LL D+   V   A   +    + 
Sbjct: 4   EEEEFDIREALANG-EHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK- 61

Query: 106 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 165
              +L    +      L    +  +   +A     MA    +   ++ ++P+  +  +  
Sbjct: 62  TREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE--LVKSMIPVLFANYRIG 119

Query: 166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 225
               ++N+   L+++ +   + +   S++   + +   ++   +L  + +I  +      
Sbjct: 120 DEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF 176

Query: 226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 285
            + +  L  + +  L D    +R +A   L  LA        ++ +  + LE +N+   L
Sbjct: 177 KYVNPFLPRI-INLLHDGDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSL 232

Query: 286 YRMTILRAISLLAPVMG 302
              T+   IS L  + G
Sbjct: 233 VNKTVKEGISRLLLLEG 249

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 37/227 (16%), Positives = 87/227 (38%), Gaps = 18/227 (7%)

Query: 37  ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE-VRIAA 95
           +L  ++    D  W V     + +  +  A   E     ++     LL+ +EA  +    
Sbjct: 33  VLKKLIELLDDDLWTVVKNAISIIMVI--AKTREDLYEPMLKKLFSLLKKSEAIPLTQEI 90

Query: 96  AGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL 155
           A    +  +   PEL ++ ++P +        +  +  ++  +  +A        +  ++
Sbjct: 91  AKAFGQMAK-EKPEL-VKSMIPVLFANYRIGDEKTKINVSYALEEIAK--ANPMLMASIV 146

Query: 156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEY 215
             F+S+L  +  + +L  ++ ++ + +     +     LP I+ L  D    VR + +E 
Sbjct: 147 RDFMSMLSSKNREDKLTALNFIEAMGENSFKYV--NPFLPRIINLLHDGDEIVRASAVEA 204

Query: 216 IPLLASQLGVGFFDDKLGALCMQWL---QDKVYSIRDAAANNLKRLA 259
           +  LA+       +DKL  + ++ L    D    +       + RL 
Sbjct: 205 LVHLAT------LNDKLRKVVIKRLEELNDTSSLVNKTVKEGISRLL 245

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 30/215 (13%), Positives = 82/215 (38%), Gaps = 8/215 (3%)

Query: 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221
           +++E  D+R   ++  + + +++ +    +S+L  ++EL +D  W V    I  I ++A 
Sbjct: 3   MEEEEFDIR-EALANGEHLEKILIMAKYDESVLKKLIELLDDDLWTVVKNAISIIMVIAK 61

Query: 222 QLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 281
                 ++  L  L     + +   +    A    ++A+E      ++ + P +      
Sbjct: 62  T-REDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP--ELVKSMIPVLFANYRI 118

Query: 282 PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD 341
                ++ +  A+  +A      +  + ++   ++    +    K      ++++     
Sbjct: 119 GDEKTKINVSYALEEIAKANPMLM--ASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-- 174

Query: 342 QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID 376
                    P ++ L  D D  VR  A +A+  + 
Sbjct: 175 SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLA 209

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 52.4 bits (125), Expect = 6e-08
 Identities = 28/175 (16%), Positives = 68/175 (38%), Gaps = 11/175 (6%)

Query: 7   SNDQDSVRLLAVEGCAALGKL-LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCE 65
            ++   +     +   A G++  E  + V  ++PV+    +    + +  V+  L E+ +
Sbjct: 80  KSEAIPLTQEIAK---AFGQMAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAK 136

Query: 66  AVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSD 125
           A  P      +V  ++ +L     E ++ A   +       N    +   LP +  L  D
Sbjct: 137 A-NPM-LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE--NSFKYVNPFLPRIINLLHD 192

Query: 126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 180
             + VR++    ++ +A L   +  + +++   L  L D    V   +   + ++
Sbjct: 193 GDEIVRASAVEALVHLATL---NDKLRKVVIKRLEELNDTSSLVNKTVKEGISRL 244

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 20/143 (13%), Positives = 48/143 (33%), Gaps = 7/143 (4%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
              +  ++        + K       +A I+   ++    K+   +    N +  + E  
Sbjct: 118 IGDEKTKINVSYALEEIAKANP--MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGEN- 174

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
             +      +P  + LL D +  VR +A         +      ++ ++    E  +D+S
Sbjct: 175 SFKYVN-PFLPRIINLLHDGDEIVRASAV---EALVHLATLNDKLRKVVIKRLEELNDTS 230

Query: 128 QHVRSALASVIMGMAPLLGKDAT 150
             V   +   I  +  L G  ++
Sbjct: 231 SLVNKTVKEGISRLLLLEGHSSS 253

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 66.0 bits (161), Expect = 2e-12
 Identities = 34/249 (13%), Positives = 70/249 (28%), Gaps = 32/249 (12%)

Query: 13  VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 72
            +  A +     G   + +         +     D +   R   A  L       G +  
Sbjct: 6   QKRKASK---EYGLYNQCKKLN---DDELFRLLDDHNSLKRISSARVLQLR----GGQDA 55

Query: 73  RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS 132
               V   +    D     R   A  + +       E  + +IL       +D S  VR+
Sbjct: 56  ----VRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNIL--NNMALNDKSACVRA 109

Query: 133 ALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS 192
                               +++        D+  +VR      +          +  ++
Sbjct: 110 TAIESTAQRCK--KNPIYSPKIVEQSQITAFDKSTNVRRATAFAISV--------INDKA 159

Query: 193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 252
            +P ++ L +D +  VR      I +          +  +    ++ LQDK   +R  A 
Sbjct: 160 TIPLLINLLKDPNGDVRNWAAFAININKYD------NSDIRDCFVEMLQDKNEEVRIEAI 213

Query: 253 NNLKRLAEE 261
             L    ++
Sbjct: 214 IGLSYRKDK 222

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 63.3 bits (154), Expect = 1e-11
 Identities = 42/254 (16%), Positives = 77/254 (30%), Gaps = 36/254 (14%)

Query: 126 SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG 185
           S+ + +   +           K    ++L      LL D     R++    L        
Sbjct: 2   SNTYQKRKASKEYGLYNQ--CKKLNDDELFR----LLDDHNSLKRISSARVLQLRG---- 51

Query: 186 IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDK 243
                Q  +   +E   D+++  R      +     Q+ +     D+    L    L DK
Sbjct: 52  ----GQDAVRLAIEFCSDKNYIRRDIGAFIL----GQIKICKKCEDNVFNILNNMALNDK 103

Query: 244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 303
              +R  A  +  +  ++         I  Q      +     R     AIS        
Sbjct: 104 SACVRATAIESTAQRCKKNPI--YSPKIVEQSQITAFDKSTNVRRATAFAIS-------- 153

Query: 304 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVD 363
            I     +P++IN  KD   +++   A  +               IR C VE+ +D + +
Sbjct: 154 VINDKATIPLLINLLKDPNGDVRNWAAFAINI------NKYDNSDIRDCFVEMLQDKNEE 207

Query: 364 VRFFATQAIQSIDH 377
           VR  A   +     
Sbjct: 208 VRIEAIIGLSYRKD 221

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280

 Score = 60.6 bits (147), Expect = 1e-10
 Identities = 55/300 (18%), Positives = 100/300 (33%), Gaps = 49/300 (16%)

Query: 77  VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 136
                RLL D+ +  RI++A            +      +    E  SD +   R   A 
Sbjct: 25  DDELFRLLDDHNSLKRISSA---RVLQLRGGQD-----AVRLAIEFCSDKNYIRRDIGAF 76

Query: 137 VIMGMAPLLGKDATIEQLLPIFL--SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194
            I+G    +      E  +   L    L D+   VR   I    Q  +   I   S  ++
Sbjct: 77  -ILGQ---IKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY--SPKIV 130

Query: 195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN 254
                 A D+   VR A    I    S +     D     L +  L+D    +R+ AA  
Sbjct: 131 EQSQITAFDKSTNVRRATAFAI----SVIN----DKATIPLLINLLKDPNGDVRNWAAFA 182

Query: 255 LKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV 314
           +  + +    +     I    +EM+ + +   R+  +  +S             R+L V+
Sbjct: 183 I-NINKYDNSD-----IRDCFVEMLQDKNEEVRIEAIIGLS--------YRKDKRVLSVL 228

Query: 315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 373
            +  K     +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 229 CDELKK--NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 278

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 48/238 (20%), Positives = 93/238 (39%), Gaps = 45/238 (18%)

Query: 23  ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR 82
                 +P+      + + +   QD S+ VR   A  L      +G E      V   ++
Sbjct: 6   HHHHHTDPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLIK 52

Query: 83  LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA 142
            L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G  
Sbjct: 53  ALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ- 102

Query: 143 PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE 202
             +G +  +E L+      LKDE   VR+     L +    IG     +  +  +++  +
Sbjct: 103 --IGDERAVEPLIK----ALKDEDWFVRIAAAFALGE----IG----DERAVEPLIKALK 148

Query: 203 DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260
           D    VR +  + +     ++G     +++ A   +  +      R  A N L+    
Sbjct: 149 DEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETHKS 198

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 35/226 (15%), Positives = 84/226 (37%), Gaps = 44/226 (19%)

Query: 152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLA 211
            + + +++  L+D+   VR      L ++          +  +  +++  +D    VR A
Sbjct: 13  PEKVEMYIKNLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKALKDEDAWVRRA 64

Query: 212 IIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 269
             + +         G   D+  +  L ++ L+D+   +R +AA  L ++ +E        
Sbjct: 65  AADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIGDE-------- 106

Query: 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 329
                +++ + +  +  R+    A+         EI   R +  +I A KD    ++ + 
Sbjct: 107 RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALKDEDGWVRQSA 158

Query: 330 AKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375
           A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 159 ADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 196

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 33/173 (19%), Positives = 66/173 (38%), Gaps = 33/173 (19%)

Query: 8   NDQD-SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
            D+D  VR  A +   ALG++ + +      +  ++   +D+   VR   A  L ++ + 
Sbjct: 55  KDEDAWVRRAAAD---ALGQIGDER-----AVEPLIKALKDEDGWVRQSAAVALGQIGDE 106

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
                     V   ++ L+D +  VRIAAA         +  E A++ ++  +K    D 
Sbjct: 107 --------RAVEPLIKALKDEDWFVRIAAA----FALGEIGDERAVEPLIKALK----DE 150

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQ 179
              VR + A  +  +          E++      L +      R   ++ L+ 
Sbjct: 151 DGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET 195

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 32/184 (17%)

Query: 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN 253
           +   ++  +D  + VR A    +  +  +  V           ++ L+D+   +R AAA+
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV--------EPLIKALKDEDAWVRRAAAD 67

Query: 254 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313
            L ++    G E A+      +++ + +     R +   A+         +I   R +  
Sbjct: 68  ALGQI----GDERAV----EPLIKALKDEDGWVRQSAAVALG--------QIGDERAVEP 111

Query: 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 373
           +I A KD    ++   A  L  +         ++     L++  +D D  VR  A  A+ 
Sbjct: 112 LIKALKDEDWFVRIAAAFALGEI--------GDERAVEPLIKALKDEDGWVRQSAADALG 163

Query: 374 SIDH 377
            I  
Sbjct: 164 EIGG 167

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 64.7 bits (156), Expect = 2e-11
 Identities = 36/244 (14%), Positives = 83/244 (34%), Gaps = 15/244 (6%)

Query: 149 ATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 205
           A+    +   L  +     D R    N +    Q + +   D   + ++  I++L ED++
Sbjct: 2   ASASYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKN 61

Query: 206 WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 265
             V+   ++ +  L S++     +  +  LC   +      +RD ++  LK +  E  P 
Sbjct: 62  GEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN-MLSDKEQLRDISSIGLKTVIGELPPA 120

Query: 266 WAMQHITPQVLEMI---------NNPHYLYRMTILRAISLLAPVMGSEITCS--RLLPVV 314
            +   +   V + I                ++  L  ++ +    G  +      +L  +
Sbjct: 121 SSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCL 180

Query: 315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS 374
           +         ++      L  L+      +    I   L EL+++  +       Q I +
Sbjct: 181 LPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAA 240

Query: 375 IDHV 378
           I   
Sbjct: 241 ISRQ 244

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 63.2 bits (152), Expect = 6e-11
 Identities = 48/364 (13%), Positives = 113/364 (31%), Gaps = 24/364 (6%)

Query: 31  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 90
            D    ++ +I+   +DK+  V+ +    L  L   V  E     +V      +  ++ +
Sbjct: 43  DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQ 101

Query: 91  VRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELSSDSS-----QHVRSALASV 137
           +R  ++  +      L P            + I   +    +              +A +
Sbjct: 102 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 161

Query: 138 IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAI 197
           +     LL        +L   L  L      VR   I  L  +    G  +    +   +
Sbjct: 162 LSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLL 219

Query: 198 VELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNL 255
            EL+++         I+ I  ++ Q G    +  +K+  L +++       +R+      
Sbjct: 220 SELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279

Query: 256 KRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313
           +        E  +      ++ +      +              A          +    
Sbjct: 280 ESFVRRCPKE--VYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDD 337

Query: 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQA 371
             +   D    ++   AK L +++    + + E  KT+ P L+   ++ + +V+     A
Sbjct: 338 EYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHA 397

Query: 372 IQSI 375
             S+
Sbjct: 398 YLSL 401

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 55.1 bits (131), Expect = 3e-08
 Identities = 53/366 (14%), Positives = 106/366 (28%), Gaps = 38/366 (10%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           ++ + +VR   +     L         V  I  ++   S++ S          +  +   
Sbjct: 185 TSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244

Query: 67  VGP--EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI---QHILPCVKE 121
            G         ++P  V+    ++ E+R         F R    E+       I  C+K 
Sbjct: 245 AGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304

Query: 122 LSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVN 181
           L+ D + +            A     D   +Q      S   D    VR      LD V 
Sbjct: 305 LTYDPNYNYDDEDEDENAMDADGGDDD---DQGSDDEYSDDDDMSWKVRRAAAKCLDAVV 361

Query: 182 QVIGIDL--LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD---------- 229
                 L    +++ PA++   ++R   V+  +      L  Q                 
Sbjct: 362 STRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQG 421

Query: 230 -----------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWA--MQHITPQVL 276
                        +     + +++K    R    N L  L           +  + P ++
Sbjct: 422 ETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGII 481

Query: 277 EMINNPHY--LYRMTILRAISLLAPVMGSEIT---CSRLLPVVINASKDRVPNIKFNVAK 331
             +N+       ++  L  + ++      ++       L+P V+    D    I      
Sbjct: 482 FSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALL 541

Query: 332 VLQSLI 337
           V Q L+
Sbjct: 542 VTQQLV 547

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 46.6 bits (109), Expect = 1e-05
 Identities = 36/207 (17%), Positives = 76/207 (36%), Gaps = 14/207 (6%)

Query: 8    NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL---C 64
            +  + V+  A     ALG +      +   LP ++        + +Y++ + L E+    
Sbjct: 867  SPSEEVKSAA---SYALGSISVGN--LPEYLPFVLQ-EITSQPKRQYLLLHSLKEIISSA 920

Query: 65   EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS 124
              VG +P   ++    ++     E   R   A  + K   I +PE  +  +   +   SS
Sbjct: 921  SVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI-DPETLLPRLKGYLISGSS 979

Query: 125  DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI 184
             +   V +A+   I      +  D  ++  +  FL  L+D   +VR   +   +      
Sbjct: 980  YARSSVVTAVKFTISDHPQPI--DPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037

Query: 185  GIDLLSQ--SLLPAIVELAEDRHWRVR 209
               +     ++LP +    + R   +R
Sbjct: 1038 PSLIRDLLDTVLPHLYNETKVRKELIR 1064

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230

 Score = 45.9 bits (107), Expect = 2e-05
 Identities = 47/410 (11%), Positives = 113/410 (27%), Gaps = 58/410 (14%)

Query: 21   CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLV 77
             A     ++ +  +   +P++ +F +     ++    + L  L +             ++
Sbjct: 635  IAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVL 694

Query: 78   PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA--IQHILPCVKEL--SSDSSQHVRSA 133
                 L+ +++  V   A   +T   ++    L+     IL  +  L  S        SA
Sbjct: 695  DELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSA 754

Query: 134  LASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSL 193
            +      +      +     LL +    +  +   +          + + +     +   
Sbjct: 755  MLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTH--KQSYYSIAKCVAALTRACPK 812

Query: 194  LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA------LCMQWLQDKVYSI 247
                V     +  +   +      L    LG       L        + ++        +
Sbjct: 813  EGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEV 872

Query: 248  RDAAANNLKRLAEEFGPEW------------------------------------AMQHI 271
            + AA+  L  ++    PE+                                     +++I
Sbjct: 873  KSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENI 932

Query: 272  TPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAK 331
               +L+         R  +   +  L  +    +     LP +           + +V  
Sbjct: 933  WALLLKHCECAEEGTRNVVAECLGKLTLIDPETL-----LPRLKGYLISGSSYARSSVVT 987

Query: 332  VLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
             ++  I    Q +    K      ++  EDPD++VR  A     S  H  
Sbjct: 988  AVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1037

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 60.8 bits (148), Expect = 5e-11
 Identities = 49/249 (19%), Positives = 95/249 (38%), Gaps = 49/249 (19%)

Query: 22  AALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV 81
           AA     +P+      + + +   QD S+ VR   A  L      +G E      V   +
Sbjct: 10  AAAPLRADPEK-----VEMYIKNLQDDSYYVRRAAAYAL----GKIGDERA----VEPLI 56

Query: 82  RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGM 141
           + L+D +A VR AAA  + +    +  E A++ ++    +   D    VR + A+V +G 
Sbjct: 57  KALKDEDAWVRRAAADALGQ----IGDERAVEPLI----KALKDEDGWVRQS-AAVALGQ 107

Query: 142 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 201
              +G +  +E L+      LKDE   VR+     L ++          +  +  +++  
Sbjct: 108 ---IGDERAVEPLIK----ALKDEDWFVRIAAAFALGEIG--------DERAVEPLIKAL 152

Query: 202 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE 261
           +D    VR +  + +     ++G     +++ A   +  +      R  A N L+     
Sbjct: 153 KDEDGWVRQSAADAL----GEIG----GERVRAAMEKLAETGTGFARKVAVNYLETH--- 201

Query: 262 FGPEWAMQH 270
                   H
Sbjct: 202 -KSFNHHHH 209

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 39/236 (16%), Positives = 85/236 (36%), Gaps = 48/236 (20%)

Query: 142 APLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELA 201
           APL      +E  +      L+D+   VR      L ++          +  +  +++  
Sbjct: 12  APLRADPEKVEMYIK----NLQDDSYYVRRAAAYALGKIG--------DERAVEPLIKAL 59

Query: 202 EDRHWRVRLAIIEYIPLLASQLGVGFFDDK--LGALCMQWLQDKVYSIRDAAANNLKRLA 259
           +D    VR A  + +         G   D+  +  L ++ L+D+   +R +AA  L ++ 
Sbjct: 60  KDEDAWVRRAAADAL---------GQIGDERAVEPL-IKALKDEDGWVRQSAAVALGQIG 109

Query: 260 EEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK 319
           +E             +++ + +  +  R+    A+         EI   R +  +I A K
Sbjct: 110 DE--------RAVEPLIKALKDEDWFVRIAAAFALG--------EIGDERAVEPLIKALK 153

Query: 320 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI 375
           D    ++ + A  L  +          + +R  + +L E      R  A   +++ 
Sbjct: 154 DEDGWVRQSAADALGEI--------GGERVRAAMEKLAETGTGFARKVAVNYLETH 201

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 39.3 bits (92), Expect = 9e-04
 Identities = 32/184 (17%), Positives = 67/184 (36%), Gaps = 32/184 (17%)

Query: 194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAAN 253
           +   ++  +D  + VR A    +  +  +  V    + L       L+D+   +R AAA+
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGKIGDERAV----EPLIKA----LKDEDAWVRRAAAD 72

Query: 254 NLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV 313
            L ++ +E             +++ + +     R +   A+         +I   R +  
Sbjct: 73  ALGQIGDE--------RAVEPLIKALKDEDGWVRQSAAVALG--------QIGDERAVEP 116

Query: 314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQ 373
           +I A KD    ++   A  L  +         ++     L++  +D D  VR  A  A+ 
Sbjct: 117 LIKALKDEDWFVRIAAAFALGEI--------GDERAVEPLIKALKDEDGWVRQSAADALG 168

Query: 374 SIDH 377
            I  
Sbjct: 169 EIGG 172

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 62.9 bits (152), Expect = 7e-11
 Identities = 53/403 (13%), Positives = 125/403 (31%), Gaps = 44/403 (10%)

Query: 4   WQQSNDQDSVRLLAVEGCAALGKLLE--PQDCVAHILPVIVNFSQDKSWRVR---YMVAN 58
               +D  S   L     AAL  L      + + HILP++        W V+    +V  
Sbjct: 325 GSGGDDTISDWNLRKCSAAALDVLANVYRDELLPHILPLLKELLFHHEWVVKESGILVLG 384

Query: 59  QLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH---I 115
            + E C      P   +L+P  ++ L D +A VR      ++++   +  +    +   +
Sbjct: 385 AIAEGCMQGM-IPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPL 443

Query: 116 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNI 173
           +  + +   DS++ V+ A  S    +      +    +  +L   +           L +
Sbjct: 444 MTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLIL 503

Query: 174 ISKLDQVNQVIGIDLLSQSLLPAIVEL------AEDRHWRVRLAIIEYIPLLASQLGVGF 227
              +  +   +G  L     +  ++              +    ++E +  +A+ L  GF
Sbjct: 504 YDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGF 563

Query: 228 --FDDKLGALCMQWLQDKVYSIRDAAANNL---------------------KRLAEEFGP 264
             + + +   C+  +Q  +       A                        + L      
Sbjct: 564 LPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQ 623

Query: 265 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI--TCSRLLPVVINASKDRV 322
             A  +I   + + + +     R +    +  L       +    +  +P++        
Sbjct: 624 LVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF 683

Query: 323 PNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVD 363
            ++  N    +  +   +   M      +   LVE+   P+  
Sbjct: 684 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTP 726

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 44/292 (15%), Positives = 101/292 (34%), Gaps = 20/292 (6%)

Query: 5   QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVA----NQL 60
           ++S   D+     V+    L +L +  D   + L  ++   + +    R +      N +
Sbjct: 20  KESQSPDTTIQRTVQ--QKLEQLNQYPDFNNY-LIFVLTKLKSEDEPTRSLSGLILKNNV 76

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN----PELAIQHIL 116
               +   P      +    +  + D+   +R      +T           P+L +  + 
Sbjct: 77  KAHFQNF-PNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQNWPDL-LPKLC 134

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNI 173
             +     ++ +    AL  +    A +L  D     +  ++P FL   K   P +R + 
Sbjct: 135 SLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHA 194

Query: 174 ISKLDQVNQVIGIDLLS--QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-- 229
           ++ ++Q        L+    S +  +  LA D    VR  +   + +L            
Sbjct: 195 VACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM 254

Query: 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN 281
             +    +Q  QD+  ++   A      LAE+   +  +    P+++ ++ N
Sbjct: 255 HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVN 306

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852

 Score = 44.0 bits (103), Expect = 7e-05
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 12/152 (7%)

Query: 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE-WAMQHITPQVLEMINNPHYLYRMTILR 292
           + C+  + D    IR      +  +A +   + W    + P++  ++++  Y        
Sbjct: 93  SECLNNIGDSSPLIRATVGILITTIASKGELQNW--PDLLPKLCSLLDSEDYNTCEGAFG 150

Query: 293 AISLLAPVMGSEIT-------CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 345
           A+  +       +         + ++P  +   K   P I+ +    +   I    Q+++
Sbjct: 151 ALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALM 210

Query: 346 EK--TIRPCLVELTEDPDVDVRFFATQAIQSI 375
               +    L  L  D + +VR    +A+  +
Sbjct: 211 LHIDSFIENLFALAGDEEPEVRKNVCRALVML 242

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} Length = 800

 Score = 56.4 bits (135), Expect = 7e-09
 Identities = 46/354 (12%), Positives = 122/354 (34%), Gaps = 32/354 (9%)

Query: 19  EGCA-ALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLV 77
           +  A  L ++         I+  +V F     W+V++     L  L E V  +     L 
Sbjct: 246 DAAAYLLSRIYPLIG-PNDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVEDKD---GLC 301

Query: 78  PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV 137
              V LL   + ++++ +A  +  F    + +L ++     ++     S      +  S 
Sbjct: 302 RKLVSLLSSPDEDIKLLSAELLCHFPITDSLDLVLEKCWKNIESEELIS-----VSKTSN 356

Query: 138 IMGMAPLLGKDATIE---QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194
           +  +  +  ++  +    + L           P+VR +I++ +  +++     L+++ +L
Sbjct: 357 LSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLSEESIDFLVAEVVL 416

Query: 195 ----PAIVELAEDRHWRVRLAIIE-YIPLLASQLGVGFF-----DDKLGALCMQWLQDKV 244
                 I E+A  +  + R  + +  I    + +G   +     DD +    + + +  +
Sbjct: 417 IEEKDEIREMAI-KLLKKRRDLPKNLILHFMNVIGGSLYEPYSEDDFVSYEDLYFTKSGI 475

Query: 245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
             +        + L  E   +  +  +   +    +   ++     ++A+    P   + 
Sbjct: 476 NVVGKDEILKNRCLLFECIMKSGLPDLQSTIETTTSRT-FISLYRSVQALVKDTPYTPAN 534

Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE 358
           I         +    DR  ++K    K  +  +       +   + P   + T 
Sbjct: 535 IE-------ELEYYFDRCKDLKMAPLKEFKKKLSAPGIRSIHPMVDPLYSDYTR 581

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861

 Score = 56.4 bits (135), Expect = 9e-09
 Identities = 48/393 (12%), Positives = 122/393 (31%), Gaps = 33/393 (8%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKL--LEPQDCVAHILPVIVNFSQDKSWRVRY---M 55
           ++  Q  + +D    +++   A L           +  +L  +       +WR R    M
Sbjct: 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVM 391

Query: 56  VANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH- 114
               + +  + V         +P+ + L+ D   +V+   A  + +    +   +  Q  
Sbjct: 392 AFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQH 451

Query: 115 ---ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRL 171
              ++        D  +   +   ++I            +EQL     S + + +P +  
Sbjct: 452 LPGVVQACLIGLQDHPKVATNCSWTIIN----------LVEQLAEATPSPIYNFYPALVD 501

Query: 172 NIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--VGFFD 229
            +I   ++++          S   A+  + E     V          +  +LG  +   +
Sbjct: 502 GLIGAANRIDN---EFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDE 558

Query: 230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHY-LYRM 288
           ++L     Q LQ+   +I    A  +++      P      +      ++          
Sbjct: 559 NQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP--VADMLMGLFFRLLEKKDSAFIED 616

Query: 289 TILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVE 346
            +  AIS LA  +G           P ++ A       +       +  +   +++    
Sbjct: 617 DVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRR 676

Query: 347 --KTIRPCLVELTEDPDV--DVRFFATQAIQSI 375
               +   L ++  +P+   +++         I
Sbjct: 677 YSDAMMNVLAQMISNPNARRELKPAVLSVFGDI 709

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 9e-08
 Identities = 46/325 (14%), Positives = 98/325 (30%), Gaps = 108/325 (33%)

Query: 12  SVRLLAVEGCAA---------------LGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMV 56
           +   +A++ C +               L     P+  +  +  ++     + + R  +  
Sbjct: 164 TW--VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 57  ANQLYELCEAVGPEPTRMDLVPAYVR--LLRDNEAEVRIAAAGKVTKF---CRIL----N 107
             +L     ++  E  R+     Y    L+  N    +   A     F   C+IL     
Sbjct: 222 NIKL--RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----FNLSCKILLTTRF 274

Query: 108 PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFP 167
            ++           LS+ ++ H+       +   +  L  D   + LL  +L     + P
Sbjct: 275 KQVT--------DFLSAATTTHIS------LDHHSMTLTPDEV-KSLLLKYLDCRPQDLP 319

Query: 168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF 227
                         +V+  +    S++   +        R  LA  +             
Sbjct: 320 -------------REVLTTNPRRLSIIAESI--------RDGLATWDN------------ 346

Query: 228 FDDKLGALCMQWLQ---DKVYSIRDAAANNL-----KRLAEEFG--PEWAMQHITPQVLE 277
                      W     DK+ +I +++ N L     +++ +     P  A  HI   +L 
Sbjct: 347 -----------WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSA--HIPTILLS 393

Query: 278 MI-NNPHYLYRMTI---LRAISLLA 298
           +I  +      M +   L   SL+ 
Sbjct: 394 LIWFDVIKSDVMVVVNKLHKYSLVE 418

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 22/196 (11%), Positives = 65/196 (33%), Gaps = 19/196 (9%)

Query: 199 ELAEDRHWRVRLAIIE--YIPLLAS----QLGVGFFDDKLGALCMQWLQDKVYSIRDAAA 252
           E      W+ R+  +E  +  +L+     +     + + LG       +D        AA
Sbjct: 23  ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAA 82

Query: 253 NNLKRLAEEFGPEWAMQH----ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 308
            +++ + ++       +     +   +L+            I +A+  +        +  
Sbjct: 83  QSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSG 142

Query: 309 RL---LPVVINASKDRVPNIKFNVAKVLQSLI------PIVDQSMVEKTIRPCLVELTED 359
           R    L  ++   K + P I+    ++  + +          Q  ++  + P ++++  D
Sbjct: 143 RNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVND 202

Query: 360 PDVDVRFFATQAIQSI 375
               +R    ++   +
Sbjct: 203 TQPAIRTIGFESFAIL 218

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} Length = 249

 Score = 46.6 bits (110), Expect = 5e-06
 Identities = 27/217 (12%), Positives = 69/217 (31%), Gaps = 19/217 (8%)

Query: 27  LLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-----MDLVPAYV 81
           +L  +  +  +            W+ R     + ++   +   +         +L+  Y 
Sbjct: 7   MLPEETILDKLPKDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYG 66

Query: 82  RLL-RDNEAEVRIAAAGKVTKFCRILNPELAIQH----ILPCVKELSSDSSQHVRSALAS 136
            ++ +D   +    AA  V   C  L      +     +   + + + +    V  A+  
Sbjct: 67  HIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRK 126

Query: 137 VIMGMAPLLGKDA---TIEQLLPIFLSLLKDEFPDVR---LNIISK-LDQVNQVIGI--D 187
            ++ +       A     E +L   L  +K + P +R     + +  + +          
Sbjct: 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQR 186

Query: 188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG 224
            L   ++P ++++  D    +R    E   +L    G
Sbjct: 187 YLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFG 223

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876

 Score = 49.5 bits (117), Expect = 1e-06
 Identities = 64/387 (16%), Positives = 125/387 (32%), Gaps = 23/387 (5%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVR---YMVANQLYELC 64
           +D D     A   C  L       D V H+LP I    ++  WR R    M    + E  
Sbjct: 338 DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397

Query: 65  EAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP---CVKE 121
           E    +P  +  +P  + L++D    VR  AA  V + C +L         L        
Sbjct: 398 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLI 457

Query: 122 LSSDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQV 180
               +   V S +      +A    + A + +         L   F  +   ++   D+ 
Sbjct: 458 EGLSAEPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRP 517

Query: 181 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 240
           +     + L  S   +++E+ ++       A+ +   ++  +L           +     
Sbjct: 518 DG--HQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERL--QQVLQMESHIQSTSD 573

Query: 241 QDKVYSIRDAAANNLKRLAEEFGPEWAMQH---ITPQVLEMINN--PHYLYRMTILRAIS 295
           + +   ++      L+ +  +   + A+Q    +   +L M  +       +   L A+S
Sbjct: 574 RIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVS 633

Query: 296 LLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK---TIR 350
            L  V+G E         P +    K+         A  L   +    QS +      + 
Sbjct: 634 TLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVM 693

Query: 351 PCLVELTEDPDV--DVRFFATQAIQSI 375
             L+E   + +V   V+         I
Sbjct: 694 QLLLENLGNENVHRSVKPQILSVFGDI 720

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 11/173 (6%)

Query: 36  HILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNEAEVRI 93
           H    +    +DK      M A         + P  EP  + LVPA      + + E++ 
Sbjct: 54  HFFGELAKGIKDKKTAANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKDKEIQS 113

Query: 94  AAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASV-IMGMAPLLGKD---A 149
            A+  +      +NP  AI+ +LP +   +   +   +  +A +          KD    
Sbjct: 114 VASETLISIVNAVNPV-AIKALLPHLTN-AIVETNKWQEKIAILAAFSAMVDAAKDQVAL 171

Query: 150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLSQSLLPAIVE 199
            + +L+P+    + D   +V+    + + +  + +    I+    SL+  I +
Sbjct: 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDIERFIPSLIQCIAD 224

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 44.6 bits (106), Expect = 6e-06
 Identities = 27/138 (19%), Positives = 52/138 (37%), Gaps = 25/138 (18%)

Query: 77  VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALAS 136
           +      + D    VR   +  +++    +  E A + +L  +     +    +R A A+
Sbjct: 14  LVPRGSHMADENKWVRRDVSTALSR----MGDE-AFEPLLESLS----NEDWRIRGA-AA 63

Query: 137 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA 196
            I+G       +  +E L+     LL+D+   VR      L+Q    IG     + +  A
Sbjct: 64  WIIGN---FQDERAVEPLIK----LLEDDSGFVRSGAARSLEQ----IG----GERVRAA 108

Query: 197 IVELAEDRHWRVRLAIIE 214
           + +LAE      R   + 
Sbjct: 109 MEKLAETGTGFARKVAVN 126

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 41.5 bits (98), Expect = 6e-05
 Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 31/136 (22%)

Query: 46  QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKF 102
            D++  VR  V+  L  + +               +  L + +  +R AAA   G     
Sbjct: 22  ADENKWVRRDVSTALSRMGDEA---------FEPLLESLSNEDWRIRGAAAWIIGN---- 68

Query: 103 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL 162
                 E A++ ++  ++    D S  VRS  A  +      +G +     +      L 
Sbjct: 69  ---FQDERAVEPLIKLLE----DDSGFVRSGAARSLEQ----IGGERVRAAMEK----LA 113

Query: 163 KDEFPDVRLNIISKLD 178
           +      R   ++ L+
Sbjct: 114 ETGTGFARKVAVNYLE 129

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A Length = 507

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 33/268 (12%), Positives = 85/268 (31%), Gaps = 29/268 (10%)

Query: 75  DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSAL 134
             + A + L  D +  +R  A  ++ +F      E   +      + L +D S       
Sbjct: 65  SAINAQLDLCEDEDVSIRRQAIKELPQFAT---GENLPRVADILTQLLQTDDSAE----F 117

Query: 135 ASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL 194
             V   +  +   DA  +  L    S +      VR   I  L    + +  ++L++ + 
Sbjct: 118 NLVNNALLSIFKMDA--KGTLGGLFSQILQGEDIVRERAIKFLSTKLKTLPDEVLTKEVE 175

Query: 195 PAIVELAED-------RHWRVRLAIIEYIPLLASQLGVGFFDD---KLGALCMQWLQDKV 244
             I+  ++          + + + I+  +  L +  G     +   +   L   +     
Sbjct: 176 ELILTESKKVLEDVTGEEFVLFMKILSGLKSLQTVSGRQQLVELVAEQADLEQTFNPSDP 235

Query: 245 YSIRDAAANNLKRLAEEFGPEWA--------MQHITPQVLEMINNPHYL-YRMTILRAIS 295
             + D      ++    F              + + P +  +      L  ++ +L+ ++
Sbjct: 236 DCV-DRLLQCTRQAVPLFSKNVHSTRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLA 294

Query: 296 LLAPVMGSEITCSRLLPVVINASKDRVP 323
            ++   G        L  + +   + +P
Sbjct: 295 EMSSFCGDMEKLETNLRKLFDKLLEYMP 322

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 42.1 bits (98), Expect = 2e-04
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 11  DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE 70
           D++R    +    L  ++ P      + P++++  + K+ R R      +       G  
Sbjct: 146 DNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS 201

Query: 71  PTR-MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL 106
           P + + +       + D +  VR AA   +    +  
Sbjct: 202 PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE 238

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} Length = 266

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 26/212 (12%), Positives = 77/212 (36%), Gaps = 17/212 (8%)

Query: 81  VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS---SDSSQHVRSALASV 137
           +  L   + +  +AA   + +     +P   + +    +K  +    +++      +  +
Sbjct: 52  MSQLFHKDFKQHLAALDSLVRLADT-SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLEL 110

Query: 138 IMGMAPLLGK------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQ 191
              +  L+           +   +P  L    +   ++R ++   ++ ++ V+G   ++ 
Sbjct: 111 CKVIVELIRDTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTP 170

Query: 192 SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD-KLGALCMQWLQDKVYSIRDA 250
            LL A+    + ++ R R   +  I    +  G+       +      ++ DK  ++R+A
Sbjct: 171 MLLDAL----KSKNARQRSECLLVIEYYITNAGISPLKSLSVEKTVAPFVGDKDVNVRNA 226

Query: 251 AANNLKRLAEEFGPEWA--MQHITPQVLEMIN 280
           A N L    +  G +       +  +   ++ 
Sbjct: 227 AINVLVACFKFEGDQMWKAAGRMADKDKSLVE 258

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 618

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 41/271 (15%), Positives = 93/271 (34%), Gaps = 37/271 (13%)

Query: 103 CRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA-TIEQLLPIFLSL 161
             + + E+  + +   V++L   S+ ++R       +    ++ K    +E  LP   +L
Sbjct: 132 GCMGSSEMC-RDLAGEVEKLLKTSNSYLRK---KAALCAVHVIRKVPELMEMFLPATKNL 187

Query: 162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS 221
           L ++   V    +                  LL  + E + D     R  + + + +L +
Sbjct: 188 LNEKNHGVLHTSV-----------------VLLTEMCERSPDMLAHFRKLVPQLVRILKN 230

Query: 222 QLGVGFFDDKL-GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN 280
            +  G+  +     +   +LQ ++  +      N    +E      AM  I  QV     
Sbjct: 231 LIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE------AMNDILAQVATNTE 284

Query: 281 NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV 340
               +    +   +  +  +          + ++     +   NI++     L   +   
Sbjct: 285 TSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQT- 343

Query: 341 DQSMVEK---TIRPCLVELTEDPDVDVRFFA 368
           D + V++   TI  CL    +D DV ++  A
Sbjct: 344 DHNAVQRHRSTIVDCL----KDLDVSIKRRA 370

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 40.4 bits (94), Expect = 6e-04
 Identities = 19/158 (12%), Positives = 46/158 (29%), Gaps = 12/158 (7%)

Query: 76  LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELSSDSSQHV 130
           +     R L    A +R  AA  +    +          L +  +   ++ L  D+   V
Sbjct: 83  MHLLVGRYLEAGAAGLRWRAAQLIGTCSQN-VAAIQEQVLGLGALRKLLRLLDRDACDTV 141

Query: 131 RSALASVIMGMA---PLLGKDATIEQLLPIFLSLLKDEFPDVR---LNIISKLDQVNQVI 184
           R      I  +                  + +  ++ +   ++     ++  L   +   
Sbjct: 142 RVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH 201

Query: 185 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ 222
              L S  ++  +V L    H      ++  +  L + 
Sbjct: 202 KGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD 239

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A Length = 462

 Score = 40.6 bits (94), Expect = 7e-04
 Identities = 64/379 (16%), Positives = 125/379 (32%), Gaps = 62/379 (16%)

Query: 9   DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNF--SQDKSWRVRYMVANQLYELCEA 66
            +      A +  A +     P +    ++P +V    + + +  ++      +  +C+ 
Sbjct: 101 TETYRPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQD 160

Query: 67  VGPEPTRM---DLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNPELAIQH----ILP 117
           + PE  +    +++ A ++ +R  E    V++AA   +             +     I+ 
Sbjct: 161 IDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQ 220

Query: 118 CVKELSSDSSQHVRSALASV---IMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNII 174
            V E +      VR A       IM +     +      L  I +  +K +  +V L  I
Sbjct: 221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGI 280

Query: 175 SKLDQV-NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG 233
                V ++ + + + +               +  + A+   +P+L   L     +D   
Sbjct: 281 EFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND--- 337

Query: 234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRA 293
                   D  ++   AA   L  LA     +  + H+ P + E I NP + YR   + A
Sbjct: 338 -------DDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMA 389

Query: 294 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCL 353
              +                                      L P+V Q+M      P L
Sbjct: 390 FGCILEGPEPSQ------------------------------LKPLVIQAM------PTL 413

Query: 354 VELTEDPDVDVRFFATQAI 372
           +EL +DP V VR  A   +
Sbjct: 414 IELMKDPSVVVRDTAAWTV 432

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	100.0
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.98
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.97
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.96
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.96
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.96
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.95
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.93
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.9
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.9
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.88
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.88
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.87
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.87
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.87
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.86
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.86
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.86
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.86
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.84
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.84
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.83
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.83
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.8
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.79
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	99.79
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.77
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.76
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.76
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.75
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.75
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	99.72
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.71
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.71
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.7
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.69
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	99.68
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.67
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	99.67
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.66
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.65
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.64
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.64
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.64
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.64
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.6
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.58
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.58
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.54
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.54
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.52
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.52
2x1g_F	971	Cadmus; transport protein, developmental protein,	99.52
2x19_B	963	Importin-13; nuclear transport, protein transport;	99.52
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	99.51
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.51
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.51
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.49
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.48
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	99.47
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.43
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.42
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.42
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.41
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	99.38
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.38
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.37
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	99.36
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.33
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	99.33
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.33
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.32
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.3
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	99.29
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	99.28
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	99.27
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.27
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	99.26
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.22
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	99.21
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.2
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.1
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.09
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	99.07
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	99.03
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	99.01
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	99.0
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.89
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	98.84
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.64
3grl_A	651	General vesicular transport factor P115; vesicle t	98.58
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	98.54
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	98.53
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	98.51
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.45
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	98.28
3grl_A	651	General vesicular transport factor P115; vesicle t	98.12
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	97.84
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.39
1vsy_5	997	Proteasome activator BLM10; 20S proteasome BLM10,	97.25
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	97.25
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	97.24
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.21
3gs3_A	257	Symplekin, LD45768P; helix-turn-helix heat repeat	97.08
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	96.56
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	96.56
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.14
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	95.9
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	95.41
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	95.35
4atg_A	196	TAF6; transcription, TFIID; HET: NHE; 1.89A {Anton	95.21
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	94.49
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	94.42
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	94.32
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	94.26
2b6c_A	220	Hypothetical protein EF3068; structural genomis, D	93.99
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.82
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	93.57
3jxy_A	232	Alkylpurine DNA glycosylase ALKD; heat repeat, DNA	93.46
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	92.89
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	92.84
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	92.75
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	92.16
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	91.87
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	91.66
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	90.68
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	90.54
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	89.4
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	89.22
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	88.33
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	88.26
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	88.18
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	87.86
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	87.22
3ut4_A	134	CTHE_2751, putative uncharacterized protein; non P	87.1
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	86.46
3s4w_B	1323	Protein FACD2, fanconi anemia group D2 protein hom	86.02
3gvo_A	351	Pumilio 2, pumilio homolog 2; RNA-binding, PUF dom	84.62
1w9c_A	321	CRM1 protein, exportin 1; nuclear protein, nuclear	84.42
3bwt_A	333	Protein PUF4; pumilio, RNA binding, HO endonucleas	83.77
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	83.65
1elk_A	157	Target of MYB1; superhelix of helices, endocytosis	82.98
3fga_B	403	Serine/threonine-protein phosphatase 2A 56 kDa RE	82.16
2npp_B	449	PP2A, B subunit, serine/threonine-protein phosphat	81.02
1vsy_4	799	Proteasome activator BLM10; 20S proteasome BLM10,	80.37

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=3.1e-44  Score=339.85  Aligned_cols=373  Identities=58%  Similarity=0.946  Sum_probs=302.8

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      .+++|+++.||..|+++++.++...+++...+.++|.+.++++|++|.+|..++++++.++...+++.....++|.+.++
T Consensus       210 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  289 (588)
T 1b3u_A          210 NLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL  289 (588)
T ss_dssp             HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred             HHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHH
Confidence            34455556666666666666665555555555566666666666677777777777777666665554445566777777


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  159 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  159 (382)
                      ++|+++.||.+++.+++.++..++++    .+.+.++|.+..+++|+++.||..++.+++.++..+|.+...+.++|.+.
T Consensus       290 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~  369 (588)
T 1b3u_A          290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFL  369 (588)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHH
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHH
Confidence            77777777777777777776666543    34556677777777777777777777777777776676655567888888


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814          160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  239 (382)
Q Consensus       160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  239 (382)
                      .+++|+++.||..++.+++.+....+.+...+.++|.+.++++|++|++|..++..++.++..+|.+.+.+.++|.+...
T Consensus       370 ~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  449 (588)
T 1b3u_A          370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW  449 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG
T ss_pred             HHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence            88888888888888888888888877766667889999999999999999999999999999999888778899999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhcc
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASK  319 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~  319 (382)
                      +.|+++.||..|+.+++.++..+|.+++...++|.+.....++++.+|.+++.+++.+++.+|.+.+...++|.+...++
T Consensus       450 l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~  529 (588)
T 1b3u_A          450 LVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG  529 (588)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred             hcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCC
Confidence            99999999999999999999999998877889999999999999999999999999999999988888999999999999


Q ss_pred             CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          320 DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       320 d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      |++++||..++++++.+...+|.+.....++|.+.++.+|++++||..|.+|++.+.
T Consensus       530 d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l~  586 (588)
T 1b3u_A          530 DPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred             CCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence            999999999999999999999987777899999999999999999999999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=100.00  E-value=7.9e-43  Score=330.20  Aligned_cols=379  Identities=21%  Similarity=0.321  Sum_probs=348.9

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ..+++|+++.||..|++.++.++...+++...+.++|.+..+++|+++.+|..++.+++.++..++++.....++|.+.+
T Consensus       170 ~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~  249 (588)
T 1b3u_A          170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ  249 (588)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHhcHHhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            45678999999999999999999999887777889999999999999999999999999999988876666679999999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH----hHHHhhHHHH
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATIEQLLPIF  158 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~~~l~~~l  158 (382)
                      +++|++|.||.+++++++.++...+++.+.+.++|.+..+++|+++.||..++.+++.++..++.+    ...+.++|.+
T Consensus       250 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l  329 (588)
T 1b3u_A          250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI  329 (588)
T ss_dssp             HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred             HccCCCHHHHHHHHHHHHHHHHHhCcccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHH
Confidence            999999999999999999999999888777889999999999999999999999999999888765    4568899999


Q ss_pred             HHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHH
Q 016814          159 LSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ  238 (382)
Q Consensus       159 ~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~  238 (382)
                      ..+++|+++.||..++.+++.++..+|.+...+.++|.+..+++|+++.||..++..++.+...++.+...+.++|.+..
T Consensus       330 ~~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~lp~l~~  409 (588)
T 1b3u_A          330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE  409 (588)
T ss_dssp             HHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998887666789999999999999999999999999999988887777889999999


Q ss_pred             HhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          239 WLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       239 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      .+.|++|.+|..++.+++.++..+|.+.+.+.++|.+...+.|+++.+|..|+.+++.++..+|.+.+...++|.+....
T Consensus       410 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~llp~l~~~~  489 (588)
T 1b3u_A          410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS  489 (588)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred             HhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            99999999999999999999999998877778999999999999999999999999999999998877889999999999


Q ss_pred             cCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          319 KDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       319 ~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      .|+++.+|..++.+++.+...++.+.+...++|.+.++++|++++||..++++++.+...+|+
T Consensus       490 ~~~~~~~R~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~  552 (588)
T 1b3u_A          490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDN  552 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCH
T ss_pred             hCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhch
Confidence            999999999999999999999998888899999999999999999999999999999876653

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.98  E-value=8.3e-30  Score=250.62  Aligned_cols=375  Identities=13%  Similarity=0.130  Sum_probs=310.1

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-------ccchH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-------RMDLV   77 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-------~~~ll   77 (382)
                      .+.|+++.+|..++++++.+++...+ ..|+.++|.+.+.+.++++.+|+.++.+++.+++..+....       ...++
T Consensus        98 ~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il  176 (852)
T 4fdd_A           98 NIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMI  176 (852)
T ss_dssp             TTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHH
Confidence            35688999999999999999997643 56899999999999999999999999999999998876421       24589


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHh
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQ  153 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~  153 (382)
                      |.+.++++|+++.||.+|++++..++...+..  .....+++.+...++|+++.||..++++++.+++..+...  ..+.
T Consensus       177 ~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~  256 (852)
T 4fdd_A          177 PKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHN  256 (852)
T ss_dssp             HHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            99999999999999999999999887655443  1234678888889999999999999999999987655321  2357


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----hhHhhhHHHHHHHHh-----------cC-----------CCch
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----DLLSQSLLPAIVELA-----------ED-----------RHWR  207 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~----~~~~~~llp~l~~~~-----------~d-----------~~~~  207 (382)
                      +++.+.+.++|.++.||..++..+..+++....    ..+...++|.+.+.+           .|           .+|.
T Consensus       257 l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~  336 (852)
T 4fdd_A          257 IVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWN  336 (852)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCC
T ss_pred             HHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccch
Confidence            889999999999999999999998888753111    122356788887776           44           6799


Q ss_pred             HHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcchH
Q 016814          208 VRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPHYL  285 (382)
Q Consensus       208 vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~~~  285 (382)
                      +|..+..+++.++...|.. ..+.++|.+...+.|++|.+|.+|+.+++.+++..+..  .+...++|.+...+.|+++.
T Consensus       337 vr~~a~~~L~~la~~~~~~-~~~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~  415 (852)
T 4fdd_A          337 LRKCSAAALDVLANVYRDE-LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKAL  415 (852)
T ss_dssp             HHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999988854 45689999999999999999999999999999866532  35577899999999999999


Q ss_pred             HHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCC
Q 016814          286 YRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDP  360 (382)
Q Consensus       286 ~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~  360 (382)
                      +|.+++++++.+++.++.   ..+...++|.++..+.|+++.||..++.+++.+.+..+..  .+...+++.|..++++.
T Consensus       416 Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~~  495 (852)
T 4fdd_A          416 VRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKY  495 (852)
T ss_dssp             HHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHHHHHHHHHHHHHHh
Confidence            999999999999987653   3467889999999999999999999999999999877653  35578888888888777


Q ss_pred             CccHHhHHHHHHHHHHHHhcc
Q 016814          361 DVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       361 ~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +.+....+..+++.++..+|+
T Consensus       496 ~~~~~~~~~~ai~~l~~~~~~  516 (852)
T 4fdd_A          496 QHKNLLILYDAIGTLADSVGH  516 (852)
T ss_dssp             CHHHHHHHHHHHHHHHHHHGG
T ss_pred             ChHHHHHHHHHHHHHHHHhhh
Confidence            777777788999999877764

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.97  E-value=2.6e-28  Score=239.94  Aligned_cols=373  Identities=18%  Similarity=0.166  Sum_probs=306.2

Q ss_pred             cCCchHHHHHHHHHHHHHHhcc-C--hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            7 SNDQDSVRLLAVEGCAALGKLL-E--PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~-~--~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      ++.++.+|..|+-.+....... .  ++.....+.+.+.+.+.|+++.+|..++.+++.++...+. ..+.+++|.+.+.
T Consensus        58 ~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~-~~wp~ll~~L~~~  136 (852)
T 4fdd_A           58 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL-QNWPDLLPKLCSL  136 (852)
T ss_dssp             TTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTT-TTCTTHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCc-cccHHHHHHHHHH
Confidence            5678899999998888776531 1  2334566777777888899999999999999999987644 3467899999999


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhh
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQL  154 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~-------~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l  154 (382)
                      +.++++.+|+.++.+++.+++..+....       .+.++|.+.++++|+++.||..+++++..+....+...  ..+.+
T Consensus       137 l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~  216 (852)
T 4fdd_A          137 LDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSF  216 (852)
T ss_dssp             HSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCHHHHTSHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            9999999999999999999998765521       45688999999999999999999999999887654322  23578


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch----hhh
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV----GFF  228 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~----~~~  228 (382)
                      ++.+.+.++|+++.+|..++.++..+.+..+..  ...+.+++.+...++|+++.+|..+++.+..+++....    ..+
T Consensus       217 l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~  296 (852)
T 4fdd_A          217 IENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRH  296 (852)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            888888999999999999999999998765432  12256788888889999999999999999888753211    123


Q ss_pred             HHHHHHHHHHHh-----------cc-----------chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHH
Q 016814          229 DDKLGALCMQWL-----------QD-----------KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLY  286 (382)
Q Consensus       229 ~~~l~~~l~~~l-----------~d-----------~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~  286 (382)
                      .+.++|.+...+           .|           .+|.+|.+|..+++.++...|. .....++|.+.+.+.+++|.+
T Consensus       297 ~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~-~~~~~l~~~l~~~l~~~~~~~  375 (852)
T 4fdd_A          297 LPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVV  375 (852)
T ss_dssp             HHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG-GGHHHHHHHHHHHHTCSSHHH
T ss_pred             HHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHhcCCCHHH
Confidence            457888888776           44           5678999999999999998874 455678999999999999999


Q ss_pred             HHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCC
Q 016814          287 RMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPD  361 (382)
Q Consensus       287 r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~  361 (382)
                      |.+|+.+++.+++.++..  .+...++|.++..++|+++.||..++.+++.++...+.   ..+...+++.+.+.+.|++
T Consensus       376 R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~~  455 (852)
T 4fdd_A          376 KESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSN  455 (852)
T ss_dssp             HHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCCC
Confidence            999999999999877643  46788999999999999999999999999999987754   2356788899999899999


Q ss_pred             ccHHhHHHHHHHHHHHHhcc
Q 016814          362 VDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       362 ~~vr~~a~~al~~~~~~~~~  381 (382)
                      +.||..|+.+++.+....++
T Consensus       456 ~~vr~~a~~aL~~l~~~~~~  475 (852)
T 4fdd_A          456 KRVQEAACSAFATLEEEACT  475 (852)
T ss_dssp             HHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999877654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.97  E-value=1.5e-27  Score=235.49  Aligned_cols=375  Identities=13%  Similarity=0.164  Sum_probs=305.7

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCCc-----ccccchHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGPE-----PTRMDLVP   78 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~~-----~~~~~ll~   78 (382)
                      .+.++++.+|..++++++.++....+...|+.++|.+.+.+.++ ++.+|..++..++.+++.++.+     .....+++
T Consensus       103 ~l~~~~~~vr~~~~~~l~~i~~~~~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~  182 (861)
T 2bpt_A          103 ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI  182 (861)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHH
T ss_pred             HHCCCchHHHHHHHHHHHHHHHhhCcccccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHHHHHHHH
Confidence            45677899999999999999997655456899999999999988 9999999999999999977654     23346888


Q ss_pred             HHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--H
Q 016814           79 AYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--T  150 (382)
Q Consensus        79 ~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~  150 (382)
                      .+...+.|+  ++.||.+++++++.+...++..    ...+.+++.+.+.+.++++.+|..+++++..++...+...  .
T Consensus       183 ~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~  262 (861)
T 2bpt_A          183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPY  262 (861)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            889999987  8999999999999986544322    1234578888888999999999999999999987665321  2


Q ss_pred             HH-hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-------------------hhHhhhHHHHHHHHhcC-------
Q 016814          151 IE-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------------------DLLSQSLLPAIVELAED-------  203 (382)
Q Consensus       151 ~~-~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-------------------~~~~~~llp~l~~~~~d-------  203 (382)
                      .. .+++.+...+.|.++.+|..++..+..+++....                   ......++|.+...+.+       
T Consensus       263 l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d  342 (861)
T 2bpt_A          263 MEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED  342 (861)
T ss_dssp             HHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CC
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            34 7888888889999999999999999888765310                   11225678888877753       


Q ss_pred             CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN  280 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~  280 (382)
                      ++|.+|..+...+..++..+|.. ..+.+++.+...+.+++|.+|++|+.+++.+++..+++   .+.+.++|.+...+.
T Consensus       343 ~~~~~r~~a~~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~  421 (861)
T 2bpt_A          343 DDWNVSMSAGACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN  421 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             ccCcHHHHHHHHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcC
Confidence            56899999999999999988854 45678999999999999999999999999999766533   245678899999999


Q ss_pred             CcchHHHHHHHHHHHHhccccCh----hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------HHHHHhHH
Q 016814          281 NPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------SMVEKTIR  350 (382)
Q Consensus       281 ~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------~~~~~~i~  350 (382)
                      |+++.+|.+++++++.++..++.    ..+...++|.++..++|+ +.+|..++.++..+...++.      ..+...++
T Consensus       422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il  500 (861)
T 2bpt_A          422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALV  500 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHH
Confidence            99999999999999999987764    347789999999999987 89999999999999887651      13456778


Q ss_pred             HHHHHhcC--CCCccHHhHHHHHHHHHHHHhcc
Q 016814          351 PCLVELTE--DPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       351 ~~l~~l~~--d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      +.+...+.  |.+++||..+.++++.++...|+
T Consensus       501 ~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~  533 (861)
T 2bpt_A          501 DGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHhCcCcchHHHHHHHHHHHHHHHHcch
Confidence            88888776  45589999999999999887664

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.96  E-value=1.1e-26  Score=229.17  Aligned_cols=376  Identities=13%  Similarity=0.164  Sum_probs=304.7

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccCh-------------------hhhhhhhhhhhhhhcc-------CCCHHHHHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEP-------------------QDCVAHILPVIVNFSQ-------DKSWRVRYMVA   57 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~-------------------~~~~~~ll~~l~~~~~-------d~~~~vR~~a~   57 (382)
                      ..++|.++.+|..|++.+..++.....                   ......++|.+.+.+.       |.+|.+|..+.
T Consensus       273 ~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~  352 (861)
T 2bpt_A          273 ATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAG  352 (861)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHH
Confidence            346788999999999999998875310                   1223567777776664       34589999999


Q ss_pred             HHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHH
Q 016814           58 NQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSAL  134 (382)
Q Consensus        58 ~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a  134 (382)
                      ..++.++..++.. ....++|.+.+.++|++|.+|.+++.+++.+++..+++   .+.+.++|.+...++|+++.||..+
T Consensus       353 ~~L~~l~~~~~~~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a  431 (861)
T 2bpt_A          353 ACLQLFAQNCGNH-ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETT  431 (861)
T ss_dssp             HHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHH
T ss_pred             HHHHHHHHHccHh-HHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence            9999999988843 34678899999999999999999999999999876633   3456788999999999999999999


Q ss_pred             HHHHHhhccccCh----HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---h---hHhhhHHHHHHHHhc--
Q 016814          135 ASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---D---LLSQSLLPAIVELAE--  202 (382)
Q Consensus       135 ~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~---~~~~~llp~l~~~~~--  202 (382)
                      +.+++.++..++.    ....+.++|.+.+.++|+ +.||..++.++..+++..+.   +   .+.+.+++.+...++  
T Consensus       432 ~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~  510 (861)
T 2bpt_A          432 AWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRI  510 (861)
T ss_dssp             HHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCc
Confidence            9999999877654    235678889999999886 99999999999999887651   2   333667888888887  


Q ss_pred             CCCchHHHHHHHHhHHHHhhhchhh--hHHHHHHHHHHHhcc---------------chhHHHHHHHHHHHHHHHHhChH
Q 016814          203 DRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQD---------------KVYSIRDAAANNLKRLAEEFGPE  265 (382)
Q Consensus       203 d~~~~vr~~~~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d---------------~~~~vr~~a~~~l~~~~~~~~~~  265 (382)
                      |.++.+|..+++.++.++...+...  +.+.++|.+...+.+               ....+|..++.+++.++..+|.+
T Consensus       511 d~~~~vr~~a~~al~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  590 (861)
T 2bpt_A          511 DNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSS  590 (861)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             CcchHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            4448999999999999998887643  234667777666552               35678999999999999988874


Q ss_pred             --HHHhhhHHHHHhhhcCcch-HHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          266 --WAMQHITPQVLEMINNPHY-LYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       266 --~~~~~l~~~l~~~l~~~~~-~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                        .+...+++.+...+.+.++ .+|+.++.+++.++...|..  .+...++|.+...++++++.+|..++.+++.+...+
T Consensus       591 ~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~  670 (861)
T 2bpt_A          591 VEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSL  670 (861)
T ss_dssp             TGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence              3566788889998988777 89999999999999888765  467889999999999999999999999999999888


Q ss_pred             hHH--HHHHhHHHHHHHhcCCCC--ccHHhHHHHHHHHHHHHhcc
Q 016814          341 DQS--MVEKTIRPCLVELTEDPD--VDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       341 ~~~--~~~~~i~~~l~~l~~d~~--~~vr~~a~~al~~~~~~~~~  381 (382)
                      |..  .+...+++.+.+.+.+++  +++|..+..+++.++..+|+
T Consensus       671 ~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~  715 (861)
T 2bpt_A          671 EEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGA  715 (861)
T ss_dssp             GGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGG
T ss_pred             chhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhh
Confidence            753  345778888888777754  89999999999999988775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.96  E-value=6.6e-27  Score=238.45  Aligned_cols=377  Identities=13%  Similarity=0.150  Sum_probs=295.4

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc--------cccc
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP--------TRMD   75 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~--------~~~~   75 (382)
                      +.+.|+++.+|..|+.+++.++...++ ...+.+++.+.+.+.|+++.+|..++.+++.++..++...        +...
T Consensus        55 ~~L~d~~~~vR~~A~~~L~~l~~~~~~-~~~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~  133 (1230)
T 1u6g_C           55 KLLEDKNGEVQNLAVKCLGPLVSKVKE-YQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK  133 (1230)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTTSCH-HHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHH
Confidence            345688999999999999999988766 4567788888888889989999999999999999888652        4567


Q ss_pred             hHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---
Q 016814           76 LVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---  149 (382)
Q Consensus        76 ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---  149 (382)
                      ++|.+.+.+.| +++.+|..++.++..+++..+..  .+.+.+++.+...+.|+++.||..++.+++.++...+...   
T Consensus       134 llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~  213 (1230)
T 1u6g_C          134 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVD  213 (1230)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTT
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999984 78999999999999998765532  2346778888888889889999999998888765543210   


Q ss_pred             --------------------------------------HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hH
Q 016814          150 --------------------------------------TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LL  189 (382)
Q Consensus       150 --------------------------------------~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~  189 (382)
                                                            ..+.++|.+.+.++|+++.+|..++.+++.+....+.+  .+
T Consensus       214 ~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~  293 (1230)
T 1u6g_C          214 LIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPH  293 (1230)
T ss_dssp             HHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHH
T ss_pred             HHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHh
Confidence                                                  11456777777788888889998888888888776653  23


Q ss_pred             hhhHHHHHHHHhc-------------------------------------CCCchHHHHHHHHhHHHHhhhch--hhhHH
Q 016814          190 SQSLLPAIVELAE-------------------------------------DRHWRVRLAIIEYIPLLASQLGV--GFFDD  230 (382)
Q Consensus       190 ~~~llp~l~~~~~-------------------------------------d~~~~vr~~~~~~l~~l~~~~~~--~~~~~  230 (382)
                      .+.++|.+.+.+.                                     |..|++|..++..+..++...+.  ..+.+
T Consensus       294 l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~  373 (1230)
T 1u6g_C          294 VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK  373 (1230)
T ss_dssp             HHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHT
T ss_pred             HHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            3556666654332                                     23588999999999998876553  23345


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---------------------HHHHhhhHHHHHhhhcCcchHHHHH
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---------------------EWAMQHITPQVLEMINNPHYLYRMT  289 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---------------------~~~~~~l~~~l~~~l~~~~~~~r~~  289 (382)
                      .++|.+...+.|++..||..++.+++.++...+.                     +.+...++|.+.+.+.+++|.+|.+
T Consensus       374 ~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~  453 (1230)
T 1u6g_C          374 TVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQC  453 (1230)
T ss_dssp             TTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHH
T ss_pred             HHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhccCCHHHHHH
Confidence            6678888888899999999999999999887642                     2244566777777799999999999


Q ss_pred             HHHHHHHhccccCh--hhhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHHhcCCCCc
Q 016814          290 ILRAISLLAPVMGS--EITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       290 a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~l~~d~~~  362 (382)
                      ++.+++.++..++.  ..+...++|.++..+.|+++  .+|..++..++.+....+++.   +...++|.+...+.|+++
T Consensus       454 ~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~  533 (1230)
T 1u6g_C          454 CFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFY  533 (1230)
T ss_dssp             HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSH
T ss_pred             HHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccch
Confidence            99999999877653  24678999999999999876  899999999999987766553   567899999999999999


Q ss_pred             cHHhHHHHHHHHHHHHhcc
Q 016814          363 DVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       363 ~vr~~a~~al~~~~~~~~~  381 (382)
                      .||..|..+++.++..+|+
T Consensus       534 ~v~~~al~~l~~l~~~~~~  552 (1230)
T 1u6g_C          534 KITSEALLVTQQLVKVIRP  552 (1230)
T ss_dssp             HHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHhcC
Confidence            9999999999999988775

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.96  E-value=2.1e-26  Score=234.77  Aligned_cols=376  Identities=14%  Similarity=0.118  Sum_probs=300.5

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCCc--ccccchHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPE--PTRMDLVPAY   80 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll~~l   80 (382)
                      ..+.|+++.||..|+.+++.++...+... .+.++|.+.+.+. +.++.+|..++++++.++...+..  .+...++|.+
T Consensus       182 ~~L~~~~~~vR~~a~~al~~l~~~~~~~~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~l  260 (1230)
T 1u6g_C          182 PQLTSPRLAVRKRTIIALGHLVMSCGNIV-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLV  260 (1230)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHTTTC-----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHH
T ss_pred             HHHcCCcHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45678889999999999999999876543 4556666665554 334678999999999999987763  2346799999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcC----------------------------------
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSS----------------------------------  124 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~----------------------------------  124 (382)
                      .+.+.|+++.||..++.+++.+++.++.+  .+.+.++|.+...+.                                  
T Consensus       261 l~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~  340 (1230)
T 1u6g_C          261 VKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYS  340 (1230)
T ss_dssp             HHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC--------------------------------
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccc
Confidence            99999999999999999999999987653  355677777766542                                  


Q ss_pred             ---CCchHHHHHHHHHHHhhccccCh--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-------------
Q 016814          125 ---DSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------------  186 (382)
Q Consensus       125 ---d~~~~vr~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-------------  186 (382)
                         |..|.||..++.++..++...+.  ....+.++|.+...+.|.++.||..++.++..+....+.             
T Consensus       341 ~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~  420 (1230)
T 1u6g_C          341 DDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQ  420 (1230)
T ss_dssp             ----CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------
T ss_pred             cccccCHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCcccccc
Confidence               22467899999999999886664  345578889999999999999999999999988776542             


Q ss_pred             --------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch--hhhHHHHHHHHHHHhccchh--HHHHHHHHH
Q 016814          187 --------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV--GFFDDKLGALCMQWLQDKVY--SIRDAAANN  254 (382)
Q Consensus       187 --------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~--~vr~~a~~~  254 (382)
                              +.+.+.++|.+.+.++|++|++|..++..++.++...+.  ..+.+.++|.+...+.|+.+  ++|..++..
T Consensus       421 ~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~  500 (1230)
T 1u6g_C          421 GETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSC  500 (1230)
T ss_dssp             CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             ccchHHHHHHHhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence                    223466778888889999999999999999999887543  23457899999999999875  999999999


Q ss_pred             HHHHHHHhChHH---HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---------hhhhhhhHHHHHhhc--cC
Q 016814          255 LKRLAEEFGPEW---AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---------EITCSRLLPVVINAS--KD  320 (382)
Q Consensus       255 l~~~~~~~~~~~---~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---------~~~~~~~l~~l~~~l--~d  320 (382)
                      ++.+.+..|++.   +...++|.+...+.|+++.+|..++.+++.+++.++.         ..+.+.++|.++..+  .|
T Consensus       501 l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~d  580 (1230)
T 1u6g_C          501 LYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYIKDLFTCTIKRLKAAD  580 (1230)
T ss_dssp             HHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCCSSSCCCCCCHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHhcCcccccccchHHHHHHHHHHHHHHHhccC
Confidence            999998887763   5678999999999999999999999999999887765         257789999999998  77


Q ss_pred             CCccHHHHHHHHHHHHhhhhhHH------------------------------------------HHHHhHHHHHHHhcC
Q 016814          321 RVPNIKFNVAKVLQSLIPIVDQS------------------------------------------MVEKTIRPCLVELTE  358 (382)
Q Consensus       321 ~~~~vR~~a~~~l~~i~~~~~~~------------------------------------------~~~~~i~~~l~~l~~  358 (382)
                      .++.+|..++.+++.+....|..                                          .+...++|.+.+.+.
T Consensus       581 ~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~  660 (1230)
T 1u6g_C          581 IDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR  660 (1230)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTGGGCCTHHHHHHHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhCchhhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH
Confidence            88899999999999998876532                                          112455666666677


Q ss_pred             CCCccHHhHHHHHHHHHHHHhc
Q 016814          359 DPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       359 d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      |.++.+|.+++.+++.+....+
T Consensus       661 ~~~~~~r~~a~~al~~l~~~~~  682 (1230)
T 1u6g_C          661 KNQRALKLGTLSALDILIKNYS  682 (1230)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHCC
T ss_pred             hCCHHHHHHHHHHHHHHHhccc
Confidence            8889999999999999988765

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.96  E-value=2.9e-26  Score=226.65  Aligned_cols=374  Identities=17%  Similarity=0.192  Sum_probs=302.3

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC--CHHHHHHHHHHHHHHHHHhCCc---ccccchHHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGPE---PTRMDLVPA   79 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~   79 (382)
                      .+.++++.+ ..++.+++.++....+...|+.++|.+.+.+.++  ++.+|..++++++.+++..+.+   .....+++.
T Consensus        98 ~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~  176 (876)
T 1qgr_A           98 TLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTA  176 (876)
T ss_dssp             HTTTCCSSS-CHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHH
T ss_pred             HhCCCcHHH-HHHHHHHHHHHHhhCcccccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHH
Confidence            345666777 8899999999987656567999999999999988  9999999999999999876532   223457888


Q ss_pred             HHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HH
Q 016814           80 YVRLLRDN--EAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TI  151 (382)
Q Consensus        80 l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~  151 (382)
                      +.+.+.++  ++.||..+++++..++..++..    ...+.+++.+.+.++|.++.+|..+++++..++...++..  ..
T Consensus       177 l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~  256 (876)
T 1qgr_A          177 IIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM  256 (876)
T ss_dssp             HHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH
T ss_pred             HHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            88888887  6899999999999987654432    2223578888888899999999999999999987655321  23


Q ss_pred             H-hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--------------------h---hHhhhHHHHHHHHhc-----
Q 016814          152 E-QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--------------------D---LLSQSLLPAIVELAE-----  202 (382)
Q Consensus       152 ~-~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--------------------~---~~~~~llp~l~~~~~-----  202 (382)
                      . .+++.+...+.+.++.+|..++..+..+++....                    .   ...+.++|.+.+.+.     
T Consensus       257 ~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d  336 (876)
T 1qgr_A          257 GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEN  336 (876)
T ss_dssp             TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhccccc
Confidence            4 7888888888999999999999888877654210                    0   012567777777764     


Q ss_pred             --CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHh
Q 016814          203 --DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLE  277 (382)
Q Consensus       203 --d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~  277 (382)
                        +++|.+|..+...++.++..++.. ..+.++|.+...+.|++|.+|.+++.+++.+++..+++   .+...++|.+..
T Consensus       337 ~~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~  415 (876)
T 1qgr_A          337 DDDDDWNPCKAAGVCLMLLATCCEDD-IVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIE  415 (876)
T ss_dssp             CCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHHCcHh-hHHHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence              568999999999999999988854 45688999999999999999999999999999877633   355678999999


Q ss_pred             hhcCcchHHHHHHHHHHHHhccccCh----hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh------------
Q 016814          278 MINNPHYLYRMTILRAISLLAPVMGS----EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD------------  341 (382)
Q Consensus       278 ~l~~~~~~~r~~a~~~l~~l~~~~~~----~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~------------  341 (382)
                      .+.|+++.+|..|+.+++.+++.++.    ..+...++|.++..+.|+ +.||..++.+++.+....+            
T Consensus       416 ~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~  494 (876)
T 1qgr_A          416 LMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEP  494 (876)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCC
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccc
Confidence            99999999999999999999987764    357789999999999985 8899999999999998765            


Q ss_pred             ----HHHHHHhHHHHHHHhcCCC---CccHHhHHHHHHHHHHHHhcc
Q 016814          342 ----QSMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       342 ----~~~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~~~~~  381 (382)
                          -..+...++|.+..++.+.   +..+|..+.++++.++...|.
T Consensus       495 ~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~  541 (876)
T 1qgr_A          495 ATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAK  541 (876)
T ss_dssp             CCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCS
T ss_pred             cchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCch
Confidence                1235578899999887765   468999999999999887764

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.95  E-value=1.1e-25  Score=206.48  Aligned_cols=345  Identities=15%  Similarity=0.147  Sum_probs=273.3

Q ss_pred             CchHHHHHHHHHHHHHHhcc--------------ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814            9 DQDSVRLLAVEGCAALGKLL--------------EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM   74 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~--------------~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~   74 (382)
                      .++.+|..|+..+..+.+..              -++.....+...+.+.+.++++.+ ..++.+++.++....+...+.
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~  127 (462)
T 1ibr_B           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWP  127 (462)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCT
T ss_pred             CChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccH
Confidence            37899999999999886432              112334456666667777888888 999999999998876544568


Q ss_pred             chHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814           75 DLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        75 ~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .++|.+.+.+.++  ++.+|..++.+++.+++...++   .+.+.+++.+..+++|+  ++.||..++++++.+...++.
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998  8999999999999999876332   33456888899999988  799999999999997765442


Q ss_pred             H----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhh-hHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          148 D----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       148 ~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      .    ...+.+++.+.+.+.+.++.+|..+++++..+....+..  .+.. .+++.+...+++.+..+|..+++.+..++
T Consensus       208 ~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~  287 (462)
T 1ibr_B          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (462)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence            2    123456888888899999999999999999998766532  2235 78888888889999999999999998887


Q ss_pred             hhh-------------------c-hhh---hHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814          221 SQL-------------------G-VGF---FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQH  270 (382)
Q Consensus       221 ~~~-------------------~-~~~---~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  270 (382)
                      ...                   . ...   +.+.++|.+...+.       |.+|.+|.+|..+++.++..+| +.....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~  366 (462)
T 1ibr_B          288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPH  366 (462)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHH
T ss_pred             HHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHH
Confidence            642                   0 011   23568888887774       3468999999999999999998 455677


Q ss_pred             hHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----
Q 016814          271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----  343 (382)
Q Consensus       271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----  343 (382)
                      ++|.+.+.+.+++|.+|.+++.+++.+++.++.+   .+...++|.++..++|+++.||..|+.+++.+...+++.    
T Consensus       367 ~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  446 (462)
T 1ibr_B          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND  446 (462)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGCCST
T ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            8999999999999999999999999999876632   356789999999999999999999999999999988763    


Q ss_pred             HHHHhHHHHHHH
Q 016814          344 MVEKTIRPCLVE  355 (382)
Q Consensus       344 ~~~~~i~~~l~~  355 (382)
                      .+...+++.|.+
T Consensus       447 ~~l~~ll~~Ll~  458 (462)
T 1ibr_B          447 VYLAPLLQCLIE  458 (462)
T ss_dssp             TTHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            234555555544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.95  E-value=8.8e-25  Score=216.01  Aligned_cols=369  Identities=15%  Similarity=0.128  Sum_probs=294.6

Q ss_pred             CchHHHHHHHHHHHHHHhccC--------------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814            9 DQDSVRLLAVEGCAALGKLLE--------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM   74 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~--------------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~   74 (382)
                      .++.+|..|+..+........              .+.....+.+.+.+.+.++++.+ ..++.+++.++........+.
T Consensus        49 ~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~~~~~w~  127 (876)
T 1qgr_A           49 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEIPVNQWP  127 (876)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHGGGTCCT
T ss_pred             CCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhCcccccH
Confidence            468999999999888653210              12233445555777777777788 999999999998765545578


Q ss_pred             chHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh
Q 016814           75 DLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        75 ~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .++|.+.+.+.++  ++.+|..++.+++.+++.++++   ...+.+++.+...+.++  ++.+|..++++++.++..++.
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~  207 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  207 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999998  8999999999999999887654   23456778888888887  689999999999998876553


Q ss_pred             Hh----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh--hHhh-hHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          148 DA----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID--LLSQ-SLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       148 ~~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~--~~~~-~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      ..    ..+.+++.+.+.+.+.++.+|..+++++..+....+..  .... .+++.+.....+.+..+|..+++.+..++
T Consensus       208 ~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~  287 (876)
T 1qgr_A          208 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  287 (876)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence            21    12457888888899999999999999999988765532  1224 78888888888999999999999988887


Q ss_pred             hhhc--------------------hhh---hHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814          221 SQLG--------------------VGF---FDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQH  270 (382)
Q Consensus       221 ~~~~--------------------~~~---~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  270 (382)
                      ....                    ...   ..+.++|.+...+.       |.+|.+|.+|..+++.++..+|. .....
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~  366 (876)
T 1qgr_A          288 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED-DIVPH  366 (876)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG-GGHHH
T ss_pred             HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH-hhHHH
Confidence            6421                    011   12567788877774       45789999999999999998874 44567


Q ss_pred             hHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH----H
Q 016814          271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ----S  343 (382)
Q Consensus       271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~----~  343 (382)
                      ++|.+...+.|++|.+|.+++.+++.++..++++   .+...++|.++..++|+++.||..|+.+++.+....+.    .
T Consensus       367 ~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~  446 (876)
T 1qgr_A          367 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAIND  446 (876)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSST
T ss_pred             HHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccH
Confidence            8899999999999999999999999999888733   46678999999999999999999999999999988764    2


Q ss_pred             HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          344 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       344 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .+...+++.+...+.|+ +.||..+++++..++...+
T Consensus       447 ~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~  482 (876)
T 1qgr_A          447 VYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAY  482 (876)
T ss_dssp             TTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhh
Confidence            45678888898888885 8999999999999998765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=6.6e-25  Score=200.60  Aligned_cols=373  Identities=13%  Similarity=0.067  Sum_probs=287.4

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhcc-Ch--h-hhhh-hhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhCC---ccccc
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLL-EP--Q-DCVA-HILPVIVNFSQDK-SWRVRYMVANQLYELCEAVGP---EPTRM   74 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~-~~--~-~~~~-~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~~---~~~~~   74 (382)
                      ++++++++.+|..|+..+..+.... .+  . .... .++|.+.+.+.++ ++.+|..++..+..++..-.+   .....
T Consensus        27 ~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~  106 (450)
T 2jdq_A           27 EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQA  106 (450)
T ss_dssp             HHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHHHHHHT
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHhC
Confidence            3457889999999999999986522 21  1 2233 6888888888887 899999999999998852111   11224


Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccC---h
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLG---K  147 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~  147 (382)
                      ..+|.+.+++.++++.+|..|+.+|++++....   .......++|.+..++++ .++.+|..++.+++.++...+   .
T Consensus       107 ~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~  186 (450)
T 2jdq_A          107 GAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPE  186 (450)
T ss_dssp             THHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCC
T ss_pred             CCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCC
Confidence            689999999999999999999999999986432   112334688999999985 789999999999999986431   1


Q ss_pred             HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       148 ~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      ......++|.+.+++.++++.+|..++.++..++.....   ......++|.+..++.++++.+|..++..++.++...+
T Consensus       187 ~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~  266 (450)
T 2jdq_A          187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDD  266 (450)
T ss_dssp             GGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCCh
Confidence            223478899999999999999999999999998764221   11224578999999999999999999999999876432


Q ss_pred             h---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814          225 V---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       225 ~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      .   ......++|.+..++.++++.+|..|+.+++.++.....   ......++|.+...+.++++.+|..++++++.++
T Consensus       267 ~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~  346 (450)
T 2jdq_A          267 IQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNAT  346 (450)
T ss_dssp             HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            2   122235889999999999999999999999999852111   1123578999999999999999999999999998


Q ss_pred             cccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---------HHHHhH-----HHHHHHhcCCC
Q 016814          299 PVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---------MVEKTI-----RPCLVELTEDP  360 (382)
Q Consensus       299 ~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---------~~~~~i-----~~~l~~l~~d~  360 (382)
                      ....++    .....++|.++..+.++++.+|..++.+|..+.......         .+...+     ++.+..+.+++
T Consensus       347 ~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~~  426 (450)
T 2jdq_A          347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSHE  426 (450)
T ss_dssp             HHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCHH
T ss_pred             cCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHcCC
Confidence            654433    223568999999999999999999999999998754321         122223     67788888889


Q ss_pred             CccHHhHHHHHHHHHH
Q 016814          361 DVDVRFFATQAIQSID  376 (382)
Q Consensus       361 ~~~vr~~a~~al~~~~  376 (382)
                      +.+|+..|..++..+.
T Consensus       427 ~~~v~~~a~~~l~~~~  442 (450)
T 2jdq_A          427 NQEIYQKAFDLIEHYF  442 (450)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHC
Confidence            9999999998887764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=9.7e-25  Score=203.38  Aligned_cols=372  Identities=11%  Similarity=0.063  Sum_probs=290.7

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhccCC-CHHHHHHHHHHHHHHHHHhC---Ccccccc
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQDK-SWRVRYMVANQLYELCEAVG---PEPTRMD   75 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~d~-~~~vR~~a~~~l~~l~~~~~---~~~~~~~   75 (382)
                      .+++++++.+|..|+..+..++.....    ......++|.+.+++.++ ++.+|..++.+|+.++....   .......
T Consensus        94 ~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  173 (530)
T 1wa5_B           94 QQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDAD  173 (530)
T ss_dssp             HHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCC
Confidence            345677899999999999998765322    122346889999999887 89999999999999885221   1112245


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC---hHh
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG---KDA  149 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~---~~~  149 (382)
                      .+|.+++++.++++.||..|+.+|++++...+   .......++|.+..++.+.++.+|..++.++..++..-+   ...
T Consensus       174 ~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~  253 (530)
T 1wa5_B          174 AVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS  253 (530)
T ss_dssp             CHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHH
Confidence            79999999999999999999999999986421   123345789999999999999999999999999986431   223


Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--  224 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--  224 (382)
                      ....++|.+..++.++++.+|..++.+++.++...+.  . .....++|.+..++.++++.+|..++..++.++...+  
T Consensus       254 ~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~  333 (530)
T 1wa5_B          254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ  333 (530)
T ss_dssp             HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHH
Confidence            4478899999999999999999999999998754221  1 1223678999999999999999999999999875322  


Q ss_pred             -hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814          225 -VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       225 -~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  299 (382)
                       .......++|.+..++.++++.+|..|+.+++.++.. ..+.    +...++|.+...+.++++.+|..++++++.++.
T Consensus       334 ~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~-~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          334 TQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAG-NTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASS  412 (530)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence             1223346889999999999999999999999999852 2221    235688999999999999999999999999987


Q ss_pred             ccCh--h----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--------------HHHHhHHHHHHHhcCC
Q 016814          300 VMGS--E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTED  359 (382)
Q Consensus       300 ~~~~--~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~i~~~l~~l~~d  359 (382)
                      ..+.  +    .....++|.++.++.++++.+|..++.+|..+.......              ......++.|..+.++
T Consensus       413 ~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~L~~L~~~  492 (530)
T 1wa5_B          413 GGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQN  492 (530)
T ss_dssp             HTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGC
T ss_pred             cCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhhcccccccHHHHHHHHcCcHHHHHHHHcC
Confidence            6443  2    233468999999999999999999999999998754321              1123457888889999


Q ss_pred             CCccHHhHHHHHHHHHH
Q 016814          360 PDVDVRFFATQAIQSID  376 (382)
Q Consensus       360 ~~~~vr~~a~~al~~~~  376 (382)
                      ++.+|+..|..++..+.
T Consensus       493 ~~~~v~~~a~~il~~~~  509 (530)
T 1wa5_B          493 ENDKIYEKAYKIIETYF  509 (530)
T ss_dssp             SCHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHC
Confidence            99999999988887654

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.94  E-value=2.9e-25  Score=203.65  Aligned_cols=371  Identities=13%  Similarity=0.095  Sum_probs=285.7

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHh------------C--Ccc
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV------------G--PEP   71 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~------------~--~~~   71 (382)
                      +.++++.+|+.|-+.+..+...- ...++..++.++..  .+.++.+|+.++..|.++...-            .  ++.
T Consensus        10 ~~s~d~~~r~~Ae~~L~~~~~~~-~~~~~~~L~~il~~--~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~   86 (462)
T 1ibr_B           10 TVSPDRLELEAAQKFLERAAVEN-LPTFLVELSRVLAN--PGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDAN   86 (462)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhhC-hHHHHHHHHHHHHc--CCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHH
Confidence            34678899999999998865421 12233333333332  2347899999999999886321            1  122


Q ss_pred             cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC--chHHHHHHHHHHHhhccccCh--
Q 016814           72 TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS--SQHVRSALASVIMGMAPLLGK--  147 (382)
Q Consensus        72 ~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~--  147 (382)
                      .+..+-..+++.+.++++.+ ..++.+++.++....++.....++|.+...+++.  ++.+|..++.+++.+++....  
T Consensus        87 ~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~  165 (462)
T 1ibr_B           87 ARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQ  165 (462)
T ss_dssp             HHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGG
T ss_pred             HHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccccccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchh
Confidence            23456777788888888888 8899999999887544322357889999999888  899999999999999875532  


Q ss_pred             -HhHHHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          148 -DATIEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       148 -~~~~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                       ....+.+++.+...++|+  ++.||..++++++.+....+..    .+.+.+++.+.....++++.+|..+++.+..++
T Consensus       166 ~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          166 LQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             TGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence             223467889999999998  7999999999999876544321    122446888888889999999999999999999


Q ss_pred             hhhchh--hhHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHHh------------------C--h---HHHHhhhHHH
Q 016814          221 SQLGVG--FFDD-KLGALCMQWLQDKVYSIRDAAANNLKRLAEEF------------------G--P---EWAMQHITPQ  274 (382)
Q Consensus       221 ~~~~~~--~~~~-~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~------------------~--~---~~~~~~l~~~  274 (382)
                      ...+..  .+.+ .+++.+...++|.+..+|..++..+..+++..                  .  .   +.+...++|.
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~  325 (462)
T 1ibr_B          246 SLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPI  325 (462)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHH
Confidence            876542  1234 78888888889999999999999999988753                  0  0   1133668888


Q ss_pred             HHhhhc-------CcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---H
Q 016814          275 VLEMIN-------NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---M  344 (382)
Q Consensus       275 l~~~l~-------~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~  344 (382)
                      +++.+.       +.+|.+|.+|..++..++..+| +.....++|.+...++|+++.+|.+++.+++.++...+++   .
T Consensus       326 l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~-~~~~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~  404 (462)
T 1ibr_B          326 LTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE-DDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP  404 (462)
T ss_dssp             HHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT-TTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT
T ss_pred             HHHHHHhcccccccccchHHHHHHHHHHHHHHhcc-HHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            887774       3468999999999999999998 4577889999999999999999999999999999765422   2


Q ss_pred             HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          345 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       345 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ....++|.+...+.|+++.||..|+.+++.++..+++
T Consensus       405 ~l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~  441 (462)
T 1ibr_B          405 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE  441 (462)
T ss_dssp             TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccc
Confidence            3467999999999999999999999999999998765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.93  E-value=2.6e-23  Score=190.04  Aligned_cols=341  Identities=13%  Similarity=0.066  Sum_probs=269.0

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cccc-chHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC---H
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRM-DLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN---P  108 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~-~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~---~  108 (382)
                      +|.+.+.++++++.+|..++..+..+.......    .... .++|.+++++.++ ++.+|..++.++.+++..-.   .
T Consensus        22 l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~~  101 (450)
T 2jdq_A           22 TSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTR  101 (450)
T ss_dssp             CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            777778888899999999999999987532221    1223 6899999999988 89999999999999876321   1


Q ss_pred             HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcC-CChHHHHHHHHhhHHhhhhh
Q 016814          109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKD-EFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       109 ~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d-~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .......+|.+.++++++++.+|..++.+|+.++.....  + .....++|.+.+++++ .++.+|..++.+++.++...
T Consensus       102 ~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          102 IVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCS
T ss_pred             HHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCC
Confidence            123357899999999999999999999999999864321  1 1225688999999985 78999999999999998643


Q ss_pred             ch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814          185 GI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  258 (382)
Q Consensus       185 ~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  258 (382)
                      ++   ......++|.+..++.++++.+|..++..+..++.....   ......++|.+..++.++++.+|..++.+++.+
T Consensus       182 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l  261 (450)
T 2jdq_A          182 SPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI  261 (450)
T ss_dssp             SSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHH
Confidence            11   223367899999999999999999999999998764321   122235788899999999999999999999999


Q ss_pred             HHHhCh--H-HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814          259 AEEFGP--E-WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKV  332 (382)
Q Consensus       259 ~~~~~~--~-~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~  332 (382)
                      +...+.  + .....++|.+..++.++++.+|..++.+++.++......   .....++|.++..+.++++.+|..++.+
T Consensus       262 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~  341 (450)
T 2jdq_A          262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWA  341 (450)
T ss_dssp             TTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             hhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            864221  1 122368999999999999999999999999998643221   1235789999999999999999999999


Q ss_pred             HHHHhhhhhHH----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          333 LQSLIPIVDQS----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       333 l~~i~~~~~~~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      |+.+.....++    .....++|.|..++.+++++||..|..++..+...
T Consensus       342 L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  391 (450)
T 2jdq_A          342 ITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRL  391 (450)
T ss_dssp             HHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence            99998753322    23457899999999999999999999999988764

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.93  E-value=6.9e-23  Score=190.92  Aligned_cols=372  Identities=12%  Similarity=0.080  Sum_probs=289.2

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccC-h---hhhhhhhhhhhhhhccCCC-HHHHHHHHHHHHHHHHHhCC---cccccc
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLE-P---QDCVAHILPVIVNFSQDKS-WRVRYMVANQLYELCEAVGP---EPTRMD   75 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~-~---~~~~~~ll~~l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~---~~~~~~   75 (382)
                      .++.++++.+|..|+..+..++.... +   ......++|.+.+++.+++ +.+|..++.+|++++..-..   ......
T Consensus        81 ~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g  160 (528)
T 4b8j_A           81 GGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHG  160 (528)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCC
Confidence            44567789999999999999977554 1   2234568898999998876 99999999999999862111   112235


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccC--hHh
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLG--KDA  149 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~--~~~  149 (382)
                      .+|.+++++.++++.||..|+.+|++++.....   .......+|.+..++ .+.++.++..++.++..++...+  ...
T Consensus       161 ~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~  240 (528)
T 4b8j_A          161 AVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFE  240 (528)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHH
Confidence            899999999999999999999999999864221   122345788999988 78899999999999999986532  223


Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch-
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  225 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  225 (382)
                      ....++|.+.+++.++++.++..++.+++.++...+..   .....++|.+..++.++++.++..++..++.++..... 
T Consensus       241 ~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~  320 (528)
T 4b8j_A          241 QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQ  320 (528)
T ss_dssp             HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHH
Confidence            34778999999999999999999999999987543211   11235789999999999999999999999998763221 


Q ss_pred             --hhhHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhChH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814          226 --GFFDDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       226 --~~~~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  298 (382)
                        ..+...++|.+..++.++ ++.+|..|+.+++.++.. ..+    .+...++|.+..++.++++.+|..|+.+++.++
T Consensus       321 ~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~-~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~  399 (528)
T 4b8j_A          321 TQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG-NKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNAT  399 (528)
T ss_dssp             HHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS-CHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC-CHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence              122345789999999998 999999999999999862 222    133468899999999889999999999999998


Q ss_pred             cccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--------------HHHHhHHHHHHHhcCCC
Q 016814          299 PVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--------------MVEKTIRPCLVELTEDP  360 (382)
Q Consensus       299 ~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--------------~~~~~i~~~l~~l~~d~  360 (382)
                      ...+.+.    ....+++.+..++.++++.++..++.+|..+.......              ......++.+..+.+++
T Consensus       400 ~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~L~~~~  479 (528)
T 4b8j_A          400 SGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKIENLQSHD  479 (528)
T ss_dssp             HHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHHHHGGGCS
T ss_pred             cCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHHHHHHcCC
Confidence            7643331    23468899999999999999999999999998654321              11234567788888999


Q ss_pred             CccHHhHHHHHHHHHH
Q 016814          361 DVDVRFFATQAIQSID  376 (382)
Q Consensus       361 ~~~vr~~a~~al~~~~  376 (382)
                      +.+++..|...+..+.
T Consensus       480 ~~~v~~~a~~il~~~~  495 (528)
T 4b8j_A          480 NNEIYEKAVKILEAYW  495 (528)
T ss_dssp             SHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHHC
Confidence            9999999999888764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=6.4e-23  Score=191.12  Aligned_cols=344  Identities=12%  Similarity=0.075  Sum_probs=271.0

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhC--
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILN--  107 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~--  107 (382)
                      ...+|.+.+.+.++++.+|..++..|..+.......    .....++|.+++++.++ ++.+|..|+.+|++++....  
T Consensus        86 ~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~  165 (530)
T 1wa5_B           86 QQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQ  165 (530)
T ss_dssp             -CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence            345777777888889999999999999886533222    12246899999999997 89999999999999976321  


Q ss_pred             -HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          108 -PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       108 -~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                       ........+|.+..+++++++.+|..++.+|+.++...+.   ......++|.+..++.+.++.++..++.++..++..
T Consensus       166 ~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~  245 (530)
T 1wa5_B          166 TKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG  245 (530)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCC
Confidence             2233357889999999999999999999999999864221   112357889999999999999999999999999854


Q ss_pred             hc---hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHH
Q 016814          184 IG---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKR  257 (382)
Q Consensus       184 ~~---~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~  257 (382)
                      -+   .......++|.+..++.++++.+|..++..+..++...+.   ......++|.+..++.++++.+|..|+.+++.
T Consensus       246 ~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~  325 (530)
T 1wa5_B          246 KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGN  325 (530)
T ss_dssp             SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHH
T ss_pred             CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHH
Confidence            31   1223367899999999999999999999999999854221   12223578999999999999999999999999


Q ss_pred             HHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHH
Q 016814          258 LAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAK  331 (382)
Q Consensus       258 ~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~  331 (382)
                      ++...+.   ......++|.+..++.++++.+|..|+++++.++......   .....++|.++..+.++++.+|..++.
T Consensus       326 l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~  405 (530)
T 1wa5_B          326 IVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACW  405 (530)
T ss_dssp             HTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            9853211   1233568999999999999999999999999998643221   123578999999999999999999999


Q ss_pred             HHHHHhhhhhH--H----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          332 VLQSLIPIVDQ--S----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       332 ~l~~i~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +|+.+....++  +    .....++|.|..++.+++++||..+..++..+...
T Consensus       406 aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~al~aL~~l~~~  458 (530)
T 1wa5_B          406 AISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKM  458 (530)
T ss_dssp             HHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHHh
Confidence            99999875433  2    23456899999999999999999999999988764

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.90  E-value=6.4e-21  Score=179.22  Aligned_cols=359  Identities=15%  Similarity=0.162  Sum_probs=268.7

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccc-cchHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPAYV   81 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~l~   81 (382)
                      .+-++|+++.+|..|+++++.+.    .....+.+.|.+.+++.|+++.||+.|+.++..+.... ++... ..++|.+.
T Consensus        92 ~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~~~~~~~~~~l~  166 (591)
T 2vgl_B           92 VKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQMVEDQGFLDSLR  166 (591)
T ss_dssp             GGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCCHHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhhcccccHHHHHH
Confidence            45578999999999998887764    34567788888999999999999999999999999843 33322 25789999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhC--------HH--------------------------------HHHHhhhHhhhh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILN--------PE--------------------------------LAIQHILPCVKE  121 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~--------~~--------------------------------~~~~~il~~l~~  121 (382)
                      ++++|+++.||.+|+.+|..++..-+        +.                                .....+++.+..
T Consensus       167 ~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~  246 (591)
T 2vgl_B          167 DLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTP  246 (591)
T ss_dssp             HTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTT
T ss_pred             HHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            99999999999999999999876322        00                                011346677777


Q ss_pred             hcCCCchHHHHHHHHHHHhhcccc--ChHh---HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch----------
Q 016814          122 LSSDSSQHVRSALASVIMGMAPLL--GKDA---TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI----------  186 (382)
Q Consensus       122 ~~~d~~~~vr~~a~~~l~~l~~~~--~~~~---~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~----------  186 (382)
                      ++++.++.|+..+++++..+...+  +++.   ..+.+.+.+..+++ +++++|..++.++..+....+.          
T Consensus       247 ~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~  325 (591)
T 2vgl_B          247 RLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFF  325 (591)
T ss_dssp             CSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTS
T ss_pred             HHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhhe
Confidence            889999999999999999987644  2121   22455566665554 6889999999998887653110          


Q ss_pred             ----h------------------hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccch
Q 016814          187 ----D------------------LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKV  244 (382)
Q Consensus       187 ----~------------------~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~  244 (382)
                          +                  .-.+.+++.+...+.+.++.+|..++..++.++..+++.  .+.+++.+..++.+..
T Consensus       326 ~~~~d~~~Ir~~al~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~  403 (591)
T 2vgl_B          326 VKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKV  403 (591)
T ss_dssp             CCTTSCHHHHHHHHHHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCC
T ss_pred             eccCChHHHHHHHHHHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccc
Confidence                0                  001356777778888889999999999999999876532  3578889999999999


Q ss_pred             hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCc
Q 016814          245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP  323 (382)
Q Consensus       245 ~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~  323 (382)
                      ..++..++..+..++...+..  .+..++.+.+.+.+ ..+.+|.++++++|..+.....   ...++..+++.+.+.++
T Consensus       404 ~~v~~e~i~~l~~ii~~~p~~--~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~~~---~~~~l~~l~~~~~~~~~  478 (591)
T 2vgl_B          404 NYVVQEAIVVIRDIFRKYPNK--YESIIATLCENLDSLDEPDARAAMIWIVGEYAERIDN---ADELLESFLEGFHDEST  478 (591)
T ss_dssp             HHHHHHHHHHHHHHHHHSCSS--CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTCTT---HHHHHHHHSTTCSSSCH
T ss_pred             hHHHHHHHHHHHHHHHHCcch--HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccccC---HHHHHHHHHHhhccCCH
Confidence            999999999999988765432  34567778887764 4578899999999998876643   24666777777778889


Q ss_pred             cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHH
Q 016814          324 NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQSI  375 (382)
Q Consensus       324 ~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~  375 (382)
                      .||..++.++.+++...+.. ....+...+.....| .+.+||..|...+..+
T Consensus       479 ~vr~~~l~a~~Kl~~~~p~~-~~~~i~~ll~~~~~d~~d~evrdRA~~y~~ll  530 (591)
T 2vgl_B          479 QVQLTLLTAIVKLFLKKPSE-TQELVQQVLSLATQDSDNPDLRDRGYIYWRLL  530 (591)
T ss_dssp             HHHHHHHHHHHHHHTTCCST-THHHHHHHHHHHHTTCCCHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhcCCChHHHHHHHHHHHHH
Confidence            99999999999998866532 123344444445556 6789999998776544

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.90  E-value=7.4e-22  Score=183.97  Aligned_cols=342  Identities=15%  Similarity=0.109  Sum_probs=267.6

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH---
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP---  108 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~---  108 (382)
                      -+|.+.+.+.++++.+|..++..+..++.......    ....++|.+++++.+++ +.+|..|+.+|++++.....   
T Consensus        75 ~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~  154 (528)
T 4b8j_A           75 SLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTK  154 (528)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHH
Confidence            36777777888899999999999999876443221    23468999999999887 99999999999999873211   


Q ss_pred             HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhh-cCCChHHHHHHHHhhHHhhhhh
Q 016814          109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLL-KDEFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       109 ~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l-~d~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .......+|.+..++.++++.+|..++.+|+.++..-+.  . ......+|.+..++ .+.++.++..++.++..++...
T Consensus       155 ~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~  234 (528)
T 4b8j_A          155 VVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK  234 (528)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS
T ss_pred             HHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC
Confidence            123346899999999999999999999999999853221  1 12245788888888 6788999999999999998653


Q ss_pred             ch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          185 GI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       185 ~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      +.  ......++|.+..++.++++.++..++..+..++.....   ......++|.+..++.++++.+|..|+.+++.++
T Consensus       235 ~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~  314 (528)
T 4b8j_A          235 PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIV  314 (528)
T ss_dssp             SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHH
Confidence            21  223367899999999999999999999999998754322   1223357889999999999999999999999998


Q ss_pred             HHhCh---HHHHhhhHHHHHhhhcCc-chHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814          260 EEFGP---EWAMQHITPQVLEMINNP-HYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKV  332 (382)
Q Consensus       260 ~~~~~---~~~~~~l~~~l~~~l~~~-~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  332 (382)
                      .....   ......++|.+..++.++ ++.+|..|+++++.++.....   ......++|.++.++.+.++.+|..++.+
T Consensus       315 ~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~a  394 (528)
T 4b8j_A          315 TGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWA  394 (528)
T ss_dssp             TSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            63211   112345789999999998 899999999999999863221   12344788999999999999999999999


Q ss_pred             HHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          333 LQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       333 l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      |+.+....+++.    ....+++.|..++.+++++++..+..++..+...
T Consensus       395 L~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~  444 (528)
T 4b8j_A          395 ISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKV  444 (528)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence            999987633321    2357889999999999999999999999998764

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=2.7e-20  Score=173.63  Aligned_cols=373  Identities=14%  Similarity=0.049  Sum_probs=267.2

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccCh--hh-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC---Ccccccch
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEP--QD-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMDL   76 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~l   76 (382)
                      ..+++++++.+|..|+..+..++...+.  .. .....+|.+.+++.++++.+|..++.++..++..-.   ........
T Consensus       107 ~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~  186 (529)
T 1jdh_A          107 VKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGG  186 (529)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCC
Confidence            4567888999999999999999886432  11 235688999999999999999999999998874110   01122346


Q ss_pred             HHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHh
Q 016814           77 VPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQ  153 (382)
Q Consensus        77 l~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~  153 (382)
                      +|.+++++.+.+ ..++.++..++.+++..-..  .......+|.+.+++++.++.++..++.++..++...+.......
T Consensus       187 i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  266 (529)
T 1jdh_A          187 PQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG  266 (529)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHH
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHh
Confidence            888888887655 45677778888887653221  123346889999999999999999999999999876544333467


Q ss_pred             hHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc--hhh-HhhhHHHHHHHHhcC--CCchHHHHHHHHhHHHHhhhch---
Q 016814          154 LLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG--IDL-LSQSLLPAIVELAED--RHWRVRLAIIEYIPLLASQLGV---  225 (382)
Q Consensus       154 l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~--~~~-~~~~llp~l~~~~~d--~~~~vr~~~~~~l~~l~~~~~~---  225 (382)
                      ++|.+.+++.++++.+|..++.+++.++..-.  ... .....+|.+.+++.+  +++.++..++..++.++...+.   
T Consensus       267 ~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~  346 (529)
T 1jdh_A          267 LLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEM  346 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHH
Confidence            88999999999999999999999999865321  111 123467888887764  4489999999999998653222   


Q ss_pred             ---hhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH---
Q 016814          226 ---GFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPHYLYRMTILRAISL---  296 (382)
Q Consensus       226 ---~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~---  296 (382)
                         .......+|.+..++.+++ +.+|..++.+++.++..-..  ......++|.+.+.+.++++.+|..++++++.   
T Consensus       347 ~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~  426 (529)
T 1jdh_A          347 AQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQF  426 (529)
T ss_dssp             HHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-----------C
T ss_pred             HHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhh
Confidence               1222345788999999876 69999999999998852211  12335688999999888777777766555443   


Q ss_pred             -------------------hccccCh--hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh--HHHHHHhHHHHH
Q 016814          297 -------------------LAPVMGS--EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD--QSMVEKTIRPCL  353 (382)
Q Consensus       297 -------------------l~~~~~~--~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~--~~~~~~~i~~~l  353 (382)
                                         ++.....  .......+|.+..++.|+++++|..++.++..+...-.  ........++.|
T Consensus       427 ~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~~~~~~i~~~~~~~~L  506 (529)
T 1jdh_A          427 VEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPL  506 (529)
T ss_dssp             BTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHH
T ss_pred             hccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCHHHHHHHHHcCChHHH
Confidence                               3321110  01234567999999999999999999999999874311  112345778999


Q ss_pred             HHhcCCCCccHHhHHHHHHHHH
Q 016814          354 VELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       354 ~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      ..+.++++++||..|..++..+
T Consensus       507 ~~l~~~~~~~v~~~a~~aL~~l  528 (529)
T 1jdh_A          507 TELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             HHGGGCSSHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHhc
Confidence            9999999999999999999876

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.88  E-value=4e-20  Score=173.86  Aligned_cols=355  Identities=16%  Similarity=0.108  Sum_probs=221.4

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHh
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRL   83 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~   83 (382)
                      +++++++..+|+.+--.+..+++.. + +..-.+.+.+.+-++|+++.+|..|+++++.+.    .......++|.+.++
T Consensus        56 ~l~~s~~~~~Krl~yl~l~~~~~~~-~-e~~~l~~n~l~kdL~~~n~~ir~~AL~~L~~i~----~~~~~~~l~~~l~~~  129 (591)
T 2vgl_B           56 NCMQTDNLELKKLVYLYLMNYAKSQ-P-DMAIMAVNSFVKDCEDPNPLIRALAVRTMGCIR----VDKITEYLCEPLRKC  129 (591)
T ss_dssp             HTTSSSCHHHHHHHHHHHHHHHHHS-H-HHHHTTHHHHGGGSSSSSHHHHHHHHHHHHTCC----SGGGHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHcccC-c-hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCC----hHHHHHHHHHHHHHH
Confidence            3567778888888777777776632 1 222334566677778888888888888877654    333345677778888


Q ss_pred             cCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHH
Q 016814           84 LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLS  160 (382)
Q Consensus        84 l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~  160 (382)
                      +.|+++.||+.|+.++..+.+..+.......++|.+.++++|+++.|+..++.+++.++..-+..   ......++.+.+
T Consensus       130 L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~  209 (591)
T 2vgl_B          130 LKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLT  209 (591)
T ss_dssp             SSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHH
Confidence            88888888888888888887743321112357788888888888888888888888887654311   011233444555


Q ss_pred             hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh--chhhh---HHHHHHH
Q 016814          161 LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL--GVGFF---DDKLGAL  235 (382)
Q Consensus       161 ~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~--~~~~~---~~~l~~~  235 (382)
                      .+.+.++-.+..++..++.+... + +.....+++.+..++++.++.|+..+++.+..+....  +++..   .+.+.+.
T Consensus       210 ~l~~~~~~~q~~il~~l~~l~~~-~-~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~~~~~~~~~  287 (591)
T 2vgl_B          210 ALNECTEWGQIFILDCLSNYNPK-D-DREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPP  287 (591)
T ss_dssp             HHHHCCHHHHHHHHHHHHTSCCC-S-HHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHHHHHHTHHH
T ss_pred             cCCCCCchHHHHHHHHHHHhCCC-C-hHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHH
Confidence            55666777777776666554421 1 1222567888888889999999999999998876533  22222   2345556


Q ss_pred             HHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHH
Q 016814          236 CMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI  315 (382)
Q Consensus       236 l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~  315 (382)
                      +..++ +++.++|..|+.+++.+....+. .+.. .+..+.....|+ +.+|..+++.+..++..-+    ...+++.+.
T Consensus       288 L~~L~-~~d~~vr~~aL~~l~~i~~~~p~-~~~~-~~~~~~~~~~d~-~~Ir~~al~~L~~l~~~~n----v~~iv~~L~  359 (591)
T 2vgl_B          288 LVTLL-SGEPEVQYVALRNINLIVQKRPE-ILKQ-EIKVFFVKYNDP-IYVKLEKLDIMIRLASQAN----IAQVLAELK  359 (591)
T ss_dssp             HHHHT-TSCHHHHHHHHHHHHHHHHHCCS-TTTT-CTTTTSCCTTSC-HHHHHHHHHHHHHTCCSST----HHHHHHHHH
T ss_pred             HHHHh-cCCccHHHHHHHHHHHHHHhChH-HHHH-HHHhheeccCCh-HHHHHHHHHHHHHHCChhh----HHHHHHHHH
Confidence            55544 57889999999999999875322 1111 111111112233 6666666666666553222    234555556


Q ss_pred             hhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          316 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       316 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      .++.+.+..+|..++.+++.++..+.+.  ...+++.|..++.+....|+..+..++..+.
T Consensus       360 ~~l~~~d~~~r~~~v~aI~~la~~~~~~--~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii  418 (591)
T 2vgl_B          360 EYATEVDVDFVRKAVRAIGRCAIKVEQS--AERCVSTLLDLIQTKVNYVVQEAIVVIRDIF  418 (591)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHHHHHHHhChhH--HHHHHHHHHHHHcccchHHHHHHHHHHHHHH
Confidence            6666666666666666666666555321  2345555555555555555555555555443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.88  E-value=3.4e-20  Score=172.93  Aligned_cols=375  Identities=13%  Similarity=0.043  Sum_probs=263.9

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChh-hh--hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ-DC--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~   75 (382)
                      +..+++++++.+|..|+..+..++..-... ..  ....++.+.+.+. ++++.+|..++..|..++..-..  ......
T Consensus        22 Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g  101 (529)
T 1jdh_A           22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG  101 (529)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCchhHHHHHHcC
Confidence            346788999999999999999998743321 11  1245666666664 55899999999999987642111  112235


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH--H-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC------
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP--E-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG------  146 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~--~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~------  146 (382)
                      .+|.+.++++++++.+|..++.+|.+++..-+.  . ......+|.+.++++++++.++..++.++..++...+      
T Consensus       102 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i  181 (529)
T 1jdh_A          102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  181 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            899999999999999999999999999876322  1 2245788999999999999999988888776653110      


Q ss_pred             ---------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814          147 ---------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       147 ---------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~  187 (382)
                                                             ........+|.+.+++.+.++.++..++..+..++...+..
T Consensus       182 ~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~  261 (529)
T 1jdh_A          182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  261 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh
Confidence                                                   00011245667777777888888888888888877654333


Q ss_pred             hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHh
Q 016814          188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~  262 (382)
                      .....++|.+.+++.++++.+|..++..+..++..-.   ........+|.+..++.+.  ++.+|..++.+++.++...
T Consensus       262 ~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~  341 (529)
T 1jdh_A          262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  341 (529)
T ss_dssp             SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCC
Confidence            2335688999999999999999999999999865321   1122234677788888753  3799999999999997543


Q ss_pred             Ch------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814          263 GP------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVL  333 (382)
Q Consensus       263 ~~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  333 (382)
                      +.      .......+|.+.+++.+++ +.+|..++++++.++..-...  .....++|.++..+.++++.+|..++.++
T Consensus       342 ~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l  421 (529)
T 1jdh_A          342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG  421 (529)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             chHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHHHHHHHHhHHHHHHHhccc
Confidence            22      1123457899999999876 699999999999998532211  23356789999998887777777555444


Q ss_pred             H----------------------HHhhhhhH--HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          334 Q----------------------SLIPIVDQ--SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       334 ~----------------------~i~~~~~~--~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                      +                      .+......  .......+|.+..++.|++++||..|..++..++
T Consensus       422 ~n~~~~~~~~~~~i~~~~~~al~~L~~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~  488 (529)
T 1jdh_A          422 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  488 (529)
T ss_dssp             ----CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             CchhhhccccHHHHHHHHHHHHHHHhcCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHh
Confidence            4                      33332111  1233567799999999999999999999988865

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=8.8e-20  Score=173.70  Aligned_cols=376  Identities=14%  Similarity=0.062  Sum_probs=277.0

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChh--h-hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQ--D-CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~--~-~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~   75 (382)
                      |..+++++++.+|..|+.++..++......  . .....+|.+.+++.+++++++..++.+|..++...++   ......
T Consensus       103 Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g  182 (644)
T 2z6h_A          103 LVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG  182 (644)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcC
Confidence            345778889999999999999999864321  1 2356889999999999999999999999998842111   112235


Q ss_pred             hHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814           76 LVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  152 (382)
Q Consensus        76 ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  152 (382)
                      .++.+++++.+.+ ..++..++.+|.+++..-..  .......++.+.+++++.+..++..++.++..++..........
T Consensus       183 ~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~  262 (644)
T 2z6h_A          183 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME  262 (644)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred             ChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            6888999888765 66888899999888753222  13334678999999999999999999999999986554333345


Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCC--CchHHHHHHHHhHHHHhhhchh-
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDR--HWRVRLAIIEYIPLLASQLGVG-  226 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~--~~~vr~~~~~~l~~l~~~~~~~-  226 (382)
                      .++|.+.++++++++.+|..++.++..+...-..  . ......+|.+..++.+.  .+.++..++..++.++...+.. 
T Consensus       263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~  342 (644)
T 2z6h_A          263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE  342 (644)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence            7899999999999999999999999988753211  1 11234678888887653  3799999999999997533321 


Q ss_pred             -----hhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc---------------
Q 016814          227 -----FFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH---------------  283 (382)
Q Consensus       227 -----~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~---------------  283 (382)
                           ......+|.+..++.+++ +.+|..++.+++.++..-..  ......++|.+.+.+.+.+               
T Consensus       343 ~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~  422 (644)
T 2z6h_A          343 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ  422 (644)
T ss_dssp             HHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC---------
T ss_pred             HHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccch
Confidence                 222357888999999875 79999999999998752211  1234567888888776543               


Q ss_pred             -------hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHH
Q 016814          284 -------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPC  352 (382)
Q Consensus       284 -------~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~  352 (382)
                             ..++..++.++..++..-...  ......+|.+..++.++++++|..++.+|..+...-...  ......++.
T Consensus       423 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~i~~~g~l~~  502 (644)
T 2z6h_A          423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP  502 (644)
T ss_dssp             -CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHH
T ss_pred             hcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCChhH
Confidence                   345666777777776433211  123467899999999999999999999999987541111  223456788


Q ss_pred             HHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          353 LVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       353 l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      |..++++++++||..|..++..++.
T Consensus       503 L~~ll~~~~~~vr~~A~~aL~~l~~  527 (644)
T 2z6h_A          503 LTELLHSRNEGVATYAAAVLFRMSE  527 (644)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999988764

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.87  E-value=5.1e-19  Score=167.62  Aligned_cols=376  Identities=12%  Similarity=0.074  Sum_probs=283.1

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccCh-hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cc----
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP-QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT----   72 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~-~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~----   72 (382)
                      +..|++.+++.++..|.+.++..+..-.. +.+.+.-.|.+..++++++..+|..++.+|.+++...+.+    .+    
T Consensus       295 li~Ll~s~~~~~q~~A~~al~~aa~~~~~R~~I~~~gv~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~  374 (810)
T 3now_A          295 ILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGA  374 (810)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHTTSHHHHHTTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCcHHHHHHHHcCcHHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhcc
Confidence            44678888999999999999998775222 2222223488889998888999999999998887543311    11    


Q ss_pred             ccchHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHH--HHH-HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-
Q 016814           73 RMDLVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPE--LAI-QHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-  146 (382)
Q Consensus        73 ~~~ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~--~~~-~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-  146 (382)
                      ...+++.+.+++.++  ++++|+.|+++|..+...-...  ... ..++|.+.+++++.++.++..++.+++.++...+ 
T Consensus       375 i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          375 ALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence            134788899999887  7899999999999986533221  222 4689999999999899999999999999986431 


Q ss_pred             ----------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc-hh-hHh
Q 016814          147 ----------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG-ID-LLS  190 (382)
Q Consensus       147 ----------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~-~~-~~~  190 (382)
                                                        ........+|.+..+++.+++.+|..++++++.++..-. .+ ...
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~  534 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ  534 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                              011124578999999999999999999999999974311 01 122


Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh-----HHHHHHHHHHHhccc-hhHHHHHHHHHHHHHHHHhCh
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF-----DDKLGALCMQWLQDK-VYSIRDAAANNLKRLAEEFGP  264 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~-----~~~l~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~  264 (382)
                      ...+|.|..++.+.+...|..++..|..++....++..     ....+|.+..+|..+ +...+..|+.+|..++..-..
T Consensus       535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~  614 (810)
T 3now_A          535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES  614 (810)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH
Confidence            45789999999999999999999999998865544321     123678888888754 344566788999988863111


Q ss_pred             ---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-hhhh--hhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          265 ---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITC--SRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       265 ---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~--~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                         .......+|.+.+++.+++..+|..|+++++.++..-.. ..+.  ...+|.++.++..++..+|..|+.+|+.+..
T Consensus       615 ~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~  694 (810)
T 3now_A          615 VRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITS  694 (810)
T ss_dssp             HHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhC
Confidence               123346789999999999999999999999999853221 1222  3578999999999999999999999999987


Q ss_pred             hhhH--H-HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          339 IVDQ--S-MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       339 ~~~~--~-~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ....  + .+. ...+|.|..++.+++.++|..|+.++..+..
T Consensus       695 ~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~  737 (810)
T 3now_A          695 VSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN  737 (810)
T ss_dssp             HCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence            4221  2 233 5788999999999999999999999998875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.87  E-value=3.6e-19  Score=169.46  Aligned_cols=376  Identities=13%  Similarity=0.059  Sum_probs=268.0

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhh-h--hhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCC--cccccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP--EPTRMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~--~~~~~~   75 (382)
                      +..+++++++.+|..|+..++.++....... .  ....++.+.+.+.+ .++.+|..++..|..++..-..  ......
T Consensus        19 Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g   98 (644)
T 2z6h_A           19 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG   98 (644)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHHHHHHTTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhHHHHHHcC
Confidence            4567889999999999999999998654321 1  12456666666654 5889999999999887643111  112235


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-----
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-----  147 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-----  147 (382)
                      .+|.+++++.++++.+|..|+.+|.+++......   ......+|.+.++++++++.++..++.+|..++...+.     
T Consensus        99 ~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i  178 (644)
T 2z6h_A           99 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  178 (644)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            8999999999999999999999999998764221   22357889999999998888888888887776632110     


Q ss_pred             ---------------------------------------H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh
Q 016814          148 ---------------------------------------D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       148 ---------------------------------------~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~  187 (382)
                                                             + ......+|.+.+++.+.++.++..++..+..++......
T Consensus       179 ~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~  258 (644)
T 2z6h_A          179 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  258 (644)
T ss_dssp             HHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC
T ss_pred             HHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh
Confidence                                                   0 001234566666677777777777777777776543322


Q ss_pred             hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccch--hHHHHHHHHHHHHHHHHh
Q 016814          188 LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKV--YSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       188 ~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~--~~vr~~a~~~l~~~~~~~  262 (382)
                      .....++|.+.+++.++++.+|..++..+..++..-.   ........++.+..++.+.+  +.+|..|+.+++.++...
T Consensus       259 ~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~  338 (644)
T 2z6h_A          259 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  338 (644)
T ss_dssp             CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCC
Confidence            2235688999999999999999999999999876321   11222346788888887643  799999999999997533


Q ss_pred             ChH------HHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccCh--hhhhhhhHHHHHhhccCCC-----------
Q 016814          263 GPE------WAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGS--EITCSRLLPVVINASKDRV-----------  322 (382)
Q Consensus       263 ~~~------~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~--~~~~~~~l~~l~~~l~d~~-----------  322 (382)
                      +..      ......+|.+.+++.+++ +.+|..++.+++.++..-..  ......++|.+...+.+.+           
T Consensus       339 ~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al  418 (644)
T 2z6h_A          339 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG  418 (644)
T ss_dssp             TTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC-----
T ss_pred             chHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHHHHhccchhhhhHhhhcc
Confidence            321      123457899999998875 79999999999999753221  1234567888888877643           


Q ss_pred             -----------ccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          323 -----------PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       323 -----------~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                                 ..++..++.+|..+.......  ......+|.|..++.+.+.++|..|..++..++.
T Consensus       419 ~n~~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~  486 (644)
T 2z6h_A          419 TQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ  486 (644)
T ss_dssp             -----CCSSCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             ccchhcccccHHHHHHHHHHHHHHHhcCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence                       345666777777776543322  1235678999999999999999999999888653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.87  E-value=2e-19  Score=166.14  Aligned_cols=371  Identities=12%  Similarity=0.114  Sum_probs=275.9

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccC--h--hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLE--P--QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDL   76 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~--~--~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l   76 (382)
                      .++.+++..+..|...+..+...-.  +  .-+...++|.+.++++ +.++.++..|+.+|++++..-.+   .......
T Consensus        65 ~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~Ga  144 (510)
T 3ul1_B           65 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA  144 (510)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            4567888999999999988765322  2  2234447899999886 55689999999999999842211   1122357


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCch-----HHHHHHHHHHHhhccccCh-
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMAPLLGK-  147 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~-  147 (382)
                      +|.+++++.+++..||+.|+.+|++++....   ........++.+..++.+++.     .+...++.++..++..-.. 
T Consensus       145 Ip~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  224 (510)
T 3ul1_B          145 IPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  224 (510)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccch
Confidence            9999999999999999999999999975322   223345678888888876543     4566778888887753321 


Q ss_pred             --HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          148 --DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       148 --~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                        -.....++|.+.+++.+++++++..++.++..++..-...   .....++|.+.+++.++++.++..++..++.++..
T Consensus       225 ~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~  304 (510)
T 3ul1_B          225 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  304 (510)
T ss_dssp             CCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcC
Confidence              1234678999999999999999999999999887542211   11245789999999999999999999999998643


Q ss_pred             hch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814          223 LGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISL  296 (382)
Q Consensus       223 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~  296 (382)
                      -..   .......++.+..++.+++..+|..|+.+++.++.....   ......++|.+...+.+++..+|..|++++..
T Consensus       305 ~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~N  384 (510)
T 3ul1_B          305 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITN  384 (510)
T ss_dssp             CHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            221   122234567788889999999999999999999753211   12345689999999999999999999999999


Q ss_pred             hccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh---H-HHH-----HHhHHHHHHHhcCCCCcc
Q 016814          297 LAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD---Q-SMV-----EKTIRPCLVELTEDPDVD  363 (382)
Q Consensus       297 l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~---~-~~~-----~~~i~~~l~~l~~d~~~~  363 (382)
                      ++.....+.    .....++.|..++.++++.++..++++|..+.....   . +.+     ....+..+..+..+++.+
T Consensus       385 l~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~  464 (510)
T 3ul1_B          385 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES  464 (510)
T ss_dssp             HHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGCSSHH
T ss_pred             HHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcCCCHH
Confidence            986555432    235678999999999999999999999998876432   1 111     234567788888899999


Q ss_pred             HHhHHHHHHHHH
Q 016814          364 VRFFATQAIQSI  375 (382)
Q Consensus       364 vr~~a~~al~~~  375 (382)
                      |+..|.+.+..+
T Consensus       465 i~~~A~~iie~y  476 (510)
T 3ul1_B          465 VYKASLNLIEKY  476 (510)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888887654

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.86  E-value=1.4e-19  Score=171.36  Aligned_cols=376  Identities=14%  Similarity=0.135  Sum_probs=282.8

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccC--h------hhhhhhhhhhhhhhccCC--CHHHHHHHHHHHHHHHHHhCC--
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLE--P------QDCVAHILPVIVNFSQDK--SWRVRYMVANQLYELCEAVGP--   69 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~--~------~~~~~~ll~~l~~~~~d~--~~~vR~~a~~~l~~l~~~~~~--   69 (382)
                      |..|++++++.+|..|+.+|..++...+  +      +.....+++.+.+++.++  ++.+|+.++.+|..++..-..  
T Consensus       335 L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~  414 (810)
T 3now_A          335 LKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKE  414 (810)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHH
Confidence            4567778889999999999999985332  1      112346788888888777  889999999999998743221  


Q ss_pred             ccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-----------------------------------HHHHHH
Q 016814           70 EPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-----------------------------------PELAIQ  113 (382)
Q Consensus        70 ~~~-~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-----------------------------------~~~~~~  113 (382)
                      ... ....+|.++++++++++.+...++.+|++++....                                   ...+..
T Consensus       415 ~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea  494 (810)
T 3now_A          415 KLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE  494 (810)
T ss_dssp             HHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC
Confidence            111 13489999999999899999999999999987321                                   112334


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH--
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL--  189 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~--  189 (382)
                      ..+|.|..+++++++.+|..++++++.++..-.. + ......+|.+..++.+.++..|..++.++..++....++..  
T Consensus       495 GaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~  574 (810)
T 3now_A          495 GITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFS  574 (810)
T ss_dssp             THHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTT
T ss_pred             cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhc
Confidence            6899999999999999999999999999853211 1 12356789999999999999999999999998765443321  


Q ss_pred             ---hhhHHHHHHHHhcCCCc-hHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814          190 ---SQSLLPAIVELAEDRHW-RVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       190 ---~~~llp~l~~~~~d~~~-~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  262 (382)
                         ....+|.|..++..+.. ..+..++..|..++..-.   ........+|.+..++.+++..||..|+.+++.++..-
T Consensus       575 ~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~  654 (810)
T 3now_A          575 GQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE  654 (810)
T ss_dssp             THHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH
T ss_pred             chhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh
Confidence               13468899999875533 445678888888875321   12233456888999999999999999999999998521


Q ss_pred             Ch-HHHH--hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--h-hhh-hhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          263 GP-EWAM--QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--E-ITC-SRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       263 ~~-~~~~--~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~-~~~-~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                      .. ..+.  ...++.+..++..++..+|..|+++++.++.....  . ... ...+|.+..++.+++..+|..|+.++..
T Consensus       655 ~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~N  734 (810)
T 3now_A          655 DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILN  734 (810)
T ss_dssp             HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            11 1122  35788999999999999999999999999864221  2 233 4689999999999999999999999999


Q ss_pred             Hhhhhh---HHHHHHhHHHHHHHhcCCC---CccHHhHHHHHHHHHHH
Q 016814          336 LIPIVD---QSMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDH  377 (382)
Q Consensus       336 i~~~~~---~~~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~  377 (382)
                      +...-+   ........++.|..++.++   +.+++..|.+++..+..
T Consensus       735 L~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~  782 (810)
T 3now_A          735 MINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAER  782 (810)
T ss_dssp             HHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHh
Confidence            986322   1233467889999987655   68899999999998865

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.86  E-value=4.6e-19  Score=164.64  Aligned_cols=371  Identities=12%  Similarity=0.108  Sum_probs=276.5

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDL   76 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l   76 (382)
                      .+..+++..+..|+..+..+...-..    .-+...++|.+.+++. +.++.++..++.+|.+++..-..   .......
T Consensus        84 ~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Ga  163 (529)
T 3tpo_A           84 GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGA  163 (529)
T ss_dssp             HHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            35567788899999998887643221    2234558888888885 66789999999999999853221   1222457


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhh---CHHHHHHhhhHhhhhhcCCCch-----HHHHHHHHHHHhhccccCh-
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRIL---NPELAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMAPLLGK-  147 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~---~~~~~~~~il~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~~-  147 (382)
                      +|.++.++.+++..||..|+.+|++++..-   .........++.+..++.+++.     .+...++.++..++..-.+ 
T Consensus       164 ip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~  243 (529)
T 3tpo_A          164 IPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPA  243 (529)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccch
Confidence            999999999999999999999999997532   1223345678888888876543     4566778888887654321 


Q ss_pred             --HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          148 --DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       148 --~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                        -.....++|.+..++.++++.++..++.++..+...-...   .....++|.+..++.++++.++..++..++.++..
T Consensus       244 ~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~  323 (529)
T 3tpo_A          244 PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTG  323 (529)
T ss_dssp             CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred             hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHcc
Confidence              2234678999999999999999999999999887542211   11245789999999999999999999999998753


Q ss_pred             hch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814          223 LGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISL  296 (382)
Q Consensus       223 ~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~  296 (382)
                      -..   .......++.+..++.+++..+|..|+.+++.++..-..   ......++|.+...+.+++..+|..|+++++.
T Consensus       324 ~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~n  403 (529)
T 3tpo_A          324 TDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITN  403 (529)
T ss_dssp             CHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             chHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            221   122334678888999999999999999999999853211   12345689999999999999999999999999


Q ss_pred             hccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh----HHHH-----HHhHHHHHHHhcCCCCcc
Q 016814          297 LAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMV-----EKTIRPCLVELTEDPDVD  363 (382)
Q Consensus       297 l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~----~~~~-----~~~i~~~l~~l~~d~~~~  363 (382)
                      ++.....+.    ....++|.|+.+|.++++.++..++.+|..+.....    .+.+     ....+..+..+..+++.+
T Consensus       404 l~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~~n~~  483 (529)
T 3tpo_A          404 YTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENES  483 (529)
T ss_dssp             HHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHTGGGGCSSHH
T ss_pred             HHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHHHHHHHcCCCHH
Confidence            986554432    234578999999999999999999999999875432    1112     124567788888889999


Q ss_pred             HHhHHHHHHHHH
Q 016814          364 VRFFATQAIQSI  375 (382)
Q Consensus       364 vr~~a~~al~~~  375 (382)
                      |+..|.+.+...
T Consensus       484 i~~~A~~iie~y  495 (529)
T 3tpo_A          484 VYKASLNLIEKY  495 (529)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888887654

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.86  E-value=2.1e-19  Score=173.83  Aligned_cols=376  Identities=14%  Similarity=0.061  Sum_probs=272.6

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccCh--hhh-hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhC---Ccccccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP--QDC-VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVG---PEPTRMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~-~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~---~~~~~~~   75 (382)
                      |..+++++++.+|..|+.+|..++.....  ..+ ....+|.+.+++.++++.+|..++.++..++....   .......
T Consensus       239 Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~  318 (780)
T 2z6g_A          239 LVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG  318 (780)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Confidence            34577888999999999999999986433  112 34578889999999999999999999988773110   0112235


Q ss_pred             hHHHHHHhcCCCcH-HHHHHHHHHHHHHHHhhCH--HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHH
Q 016814           76 LVPAYVRLLRDNEA-EVRIAAAGKVTKFCRILNP--ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIE  152 (382)
Q Consensus        76 ll~~l~~~l~d~~~-~VR~~a~~~l~~l~~~~~~--~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~  152 (382)
                      .++.+++++.+.+. .++..++.++..++..-..  .......+|.+..++.+.+..++..++.++..++..........
T Consensus       319 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~  398 (780)
T 2z6g_A          319 GPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME  398 (780)
T ss_dssp             HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCH
T ss_pred             CHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhh
Confidence            68888888887764 4566778888888753222  23344678999999999999999999999999986554333346


Q ss_pred             hhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcC-CCc-hHHHHHHHHhHHHHhhhch--
Q 016814          153 QLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAED-RHW-RVRLAIIEYIPLLASQLGV--  225 (382)
Q Consensus       153 ~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d-~~~-~vr~~~~~~l~~l~~~~~~--  225 (382)
                      .++|.+.++++++++.+|..++.+|+.+...-..  . ......+|.+.+++.+ .++ .+|..++..++.++...+.  
T Consensus       399 ~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~  478 (780)
T 2z6g_A          399 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAE  478 (780)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHH
Confidence            7899999999999999999999999998654211  1 1113467888887765 344 8999999999998653322  


Q ss_pred             ----hhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHhhhcCcc---------------
Q 016814          226 ----GFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLEMINNPH---------------  283 (382)
Q Consensus       226 ----~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~~l~~~~---------------  283 (382)
                          .......+|.+..++.+++ +.+|..++.+++.++..-..  ......++|.+.+.+.+.+               
T Consensus       479 ~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~nq~  558 (780)
T 2z6g_A          479 MAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ  558 (780)
T ss_dssp             HHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC------C
T ss_pred             HHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccccch
Confidence                1222345788899998776 59999999999999842111  1123457788877776543               


Q ss_pred             -------hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHH
Q 016814          284 -------YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPC  352 (382)
Q Consensus       284 -------~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~  352 (382)
                             ..++..++.++..++..-...  ......+|.|..++.++++.+|..++.+|..+...-...  ......++.
T Consensus       559 ~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~i~~  638 (780)
T 2z6g_A          559 FVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAP  638 (780)
T ss_dssp             CSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSHHHHHHHHHTTCHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHH
Confidence                   345667777887776321111  123567899999999999999999999999987432111  223457888


Q ss_pred             HHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          353 LVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       353 l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      |.+++++++.+||..|..++..+..
T Consensus       639 L~~Ll~~~~~~Vr~~A~~aL~~l~~  663 (780)
T 2z6g_A          639 LTELLHSRNEGVATYAAAVLFRMSE  663 (780)
T ss_dssp             HHHGGGCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            9999999999999999999998875

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.86  E-value=7.1e-20  Score=156.26  Aligned_cols=254  Identities=19%  Similarity=0.139  Sum_probs=200.5

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhh
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQL  154 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l  154 (382)
                      .-++.+++.+.|+++.||..|+.+|+.+..        ...++.+.++++|+++.||..++.+++.+...-   .....+
T Consensus        23 ~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~---~~~~~l   91 (280)
T 1oyz_A           23 LNDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK---KCEDNV   91 (280)
T ss_dssp             SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT---TTHHHH
T ss_pred             hhHHHHHHHHHcCCHHHHHHHHHHHHccCC--------chHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc---ccchHH
Confidence            357888889999999999999999998752        246788889999999999999999999886421   123456


Q ss_pred             HHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHH
Q 016814          155 LPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLG  233 (382)
Q Consensus       155 ~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~  233 (382)
                      ++.+.+ +++|+++.||..++.+++.+....+  .....++|.+...++|+++.||..++..++.+..        +..+
T Consensus        92 ~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~  161 (280)
T 1oyz_A           92 FNILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATI  161 (280)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHH
Confidence            677763 5788999999999999999874322  1225678899999999999999999999987653        2367


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHH
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPV  313 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~  313 (382)
                      |.+...+.|+++.||..|+.+++.+..  ..    ...++.+...+.|+++.+|..++.+++.+.        ....+|.
T Consensus       162 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~----~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~--------~~~~~~~  227 (280)
T 1oyz_A          162 PLLINLLKDPNGDVRNWAAFAININKY--DN----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRK--------DKRVLSV  227 (280)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHTC--CC----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTT--------CGGGHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhhcc--Cc----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--------CHhhHHH
Confidence            788888999999999999999988631  11    347788889999999999999999999876        2457788


Q ss_pred             HHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHHHHHH
Q 016814          314 VINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQ  373 (382)
Q Consensus       314 l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~  373 (382)
                      +...++|+  .||..++.+|+.+..        ...+|.|.+++.+ ++++++..+..++.
T Consensus       228 L~~~l~d~--~vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          228 LCDELKKN--TVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHTSS--SCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHhcCc--cHHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            88888884  499999999998864        3578888887754 67788887777764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.86  E-value=1.1e-19  Score=175.85  Aligned_cols=374  Identities=13%  Similarity=0.048  Sum_probs=263.8

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhh-h--hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccch
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQD-C--VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMDL   76 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~-~--~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l   76 (382)
                      ..++.++++.+|..|+.++..++....... .  .+.+++.+.+.+. +.++.+|..++..|..++..-..  .......
T Consensus       156 v~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~  235 (780)
T 2z6g_A          156 TKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGG  235 (780)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTH
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCC
Confidence            456778899999999999999987542211 1  1246666666665 55899999999999987643111  1122358


Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC-------
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG-------  146 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~-------  146 (382)
                      +|.+++++.++++.+|..|+.+|.+++......   ......+|.+.+++++.++.++..++.++..++....       
T Consensus       236 I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~  315 (780)
T 2z6g_A          236 IPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL  315 (780)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            999999999999999999999999998763221   2235788999999999888898888777775542110       


Q ss_pred             --------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh
Q 016814          147 --------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL  188 (382)
Q Consensus       147 --------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~  188 (382)
                                                            ........+|.+..++.+.++.++..++..+..++.......
T Consensus       316 ~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  395 (780)
T 2z6g_A          316 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE  395 (780)
T ss_dssp             TTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCS
T ss_pred             HcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhh
Confidence                                                  000012345666677777777788888887777765543322


Q ss_pred             HhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccc-h-hHHHHHHHHHHHHHHHHhC
Q 016814          189 LSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDK-V-YSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       189 ~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~-~-~~vr~~a~~~l~~~~~~~~  263 (382)
                      ....++|.+.+++.++++.+|..++..|..++..-..   .......++.+..++.+. + ..+|..|+.+++.++...+
T Consensus       396 ~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~  475 (780)
T 2z6g_A          396 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ  475 (780)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred             hhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence            2356899999999999999999999999998653211   111234677788888763 3 3899999999999875332


Q ss_pred             h------HHHHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCC------------
Q 016814          264 P------EWAMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRV------------  322 (382)
Q Consensus       264 ~------~~~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~------------  322 (382)
                      .      .......+|.+.+.+.+++ +.+|..++++++.++..-...  .....++|.++..+.+.+            
T Consensus       476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al~  555 (780)
T 2z6g_A          476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGT  555 (780)
T ss_dssp             THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhccc
Confidence            2      1123457899999998877 699999999999998532111  123457788887776533            


Q ss_pred             ----------ccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          323 ----------PNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       323 ----------~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                                ..++..++.+|..+.......  ......+|.|..++.+++.+||..|+.++..++
T Consensus       556 nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~  621 (780)
T 2z6g_A          556 QQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA  621 (780)
T ss_dssp             --CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence                      346677788888776432222  124677899999999999999999999998865

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.84  E-value=1.9e-19  Score=153.60  Aligned_cols=253  Identities=15%  Similarity=0.064  Sum_probs=199.6

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  116 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il  116 (382)
                      -++.+.+.+.|+++.+|..++..|+.+.        ....++.+.+++.|+++.||..++.+|+.+...-  + ....++
T Consensus        24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~--~-~~~~l~   92 (280)
T 1oyz_A           24 NDDELFRLLDDHNSLKRISSARVLQLRG--------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--K-CEDNVF   92 (280)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHC--------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--T-THHHHH
T ss_pred             hHHHHHHHHHcCCHHHHHHHHHHHHccC--------CchHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--c-cchHHH
Confidence            4566777889999999999999999875        2457899999999999999999999998875311  1 122455


Q ss_pred             Hhhh-hhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814          117 PCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  195 (382)
Q Consensus       117 ~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp  195 (382)
                      +.+. .+++|+++.||..++.+++.+....+  ...+.++|.+...++|+++.||..++.+++.+..        ...+|
T Consensus        93 ~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~--~~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~--------~~~~~  162 (280)
T 1oyz_A           93 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  162 (280)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhccCC--cccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC--------HHHHH
Confidence            6666 35789999999999999999864322  1235678999999999999999999999988753        34678


Q ss_pred             HHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHH
Q 016814          196 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  275 (382)
Q Consensus       196 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  275 (382)
                      .+..+++|+++.||..++..++.+..      ..+..++.+...+.|+++.||..|+.+++.+.    .    ...+|.+
T Consensus       163 ~L~~~l~d~~~~vr~~a~~aL~~~~~------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~----~----~~~~~~L  228 (280)
T 1oyz_A          163 LLINLLKDPNGDVRNWAAFAININKY------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK----D----KRVLSVL  228 (280)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTC------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT----C----GGGHHHH
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHhhcc------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----C----HhhHHHH
Confidence            88889999999999999999987631      12457788889999999999999999998865    2    3578888


Q ss_pred             HhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC-CCccHHHHHHHHHH
Q 016814          276 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  334 (382)
Q Consensus       276 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~  334 (382)
                      ...+.|++  +|..++.+++.+..        ...+|.+...+.+ +++.++..+++.+.
T Consensus       229 ~~~l~d~~--vr~~a~~aL~~i~~--------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          229 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhcCcc--HHHHHHHHHHhcCc--------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            88888865  88999999998764        3678888888865 45678877777765

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.84  E-value=1.8e-18  Score=159.83  Aligned_cols=341  Identities=13%  Similarity=0.073  Sum_probs=255.5

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH---
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE---  109 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~---  109 (382)
                      ++-+.+.+.+.|...+..++..+.++...-...    .....++|.+++++.+ +++.++..|+.+|.+++..-...   
T Consensus        59 i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~  138 (510)
T 3ul1_B           59 VEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKA  138 (510)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            455566778899999999999998876432221    2234589999999975 45899999999999997532211   


Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCC-----hHHHHHHHHhhHHhh
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQVN  181 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~~~  181 (382)
                      .+....+|.+..+++++++.||..++.+|+.++.....  + ......++.+..++.+.+     ..+...++.++..++
T Consensus       139 vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~  218 (510)
T 3ul1_B          139 VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLC  218 (510)
T ss_dssp             HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHh
Confidence            33446899999999999999999999999999853221  1 123567788888887654     245666777777766


Q ss_pred             hhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHH
Q 016814          182 QVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNL  255 (382)
Q Consensus       182 ~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l  255 (382)
                      ..-..   -.....++|.+..++.+++..++..++..+..++..-...   .....++|.+..++.+++..++..++.++
T Consensus       219 ~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL  298 (510)
T 3ul1_B          219 RNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAI  298 (510)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred             hcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHH
Confidence            53211   1223678999999999999999999999999987532211   12234688899999999999999999999


Q ss_pred             HHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHH
Q 016814          256 KRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNV  329 (382)
Q Consensus       256 ~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a  329 (382)
                      +.++..-..   .......++.+..++.+++..+|..++++++.++......   .....++|.++..+.+.+..+|..|
T Consensus       299 ~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A  378 (510)
T 3ul1_B          299 GNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA  378 (510)
T ss_dssp             HHHTTSCHHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHH
T ss_pred             HHhhcCCHHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHH
Confidence            998753211   1123457778888899999999999999999997543221   2345689999999999999999999


Q ss_pred             HHHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          330 AKVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       330 ~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +.+|..+...-..+.    ....+++.|..++.++|++++..+..++..+...
T Consensus       379 a~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  431 (510)
T 3ul1_B          379 AWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  431 (510)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999999987544332    3467889999999999999999999999988654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.83  E-value=3.6e-18  Score=158.66  Aligned_cols=342  Identities=13%  Similarity=0.071  Sum_probs=257.9

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHH--
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPE--  109 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~--  109 (382)
                      .++-+.+.+..+++..+..++..+.++...-...    .....++|.+++++.. +++.++..|+.+|.+++..-...  
T Consensus        77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~  156 (529)
T 3tpo_A           77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  156 (529)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            4566667778889999999999988775322221    2234689999999964 56899999999999997643221  


Q ss_pred             -HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCC-----hHHHHHHHHhhHHh
Q 016814          110 -LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEF-----PDVRLNIISKLDQV  180 (382)
Q Consensus       110 -~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~-----~~vr~~~~~~l~~~  180 (382)
                       .+....+|.+..++.++++.+|..++.+|+.++..-..  + ......++.+..++.+.+     ..+...++.++..+
T Consensus       157 ~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  236 (529)
T 3tpo_A          157 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  236 (529)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH
Confidence             34456899999999999999999999999999853221  1 123457788888887654     24566677777776


Q ss_pred             hhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814          181 NQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANN  254 (382)
Q Consensus       181 ~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  254 (382)
                      +..-.+   -.....++|.+..++.+++..++..++.++..++..-..   ......++|.+..++.+++..++..++.+
T Consensus       237 ~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~a  316 (529)
T 3tpo_A          237 CRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRA  316 (529)
T ss_dssp             HCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHH
T ss_pred             HhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHH
Confidence            643221   122367899999999999999999999999998753321   11223578889999999999999999999


Q ss_pred             HHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHH
Q 016814          255 LKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFN  328 (382)
Q Consensus       255 l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~  328 (382)
                      ++.++..-..   .......++.+..++.+++..+|..|+++++.++..-...   .....++|.++..+.+.+..+|..
T Consensus       317 L~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~  396 (529)
T 3tpo_A          317 IGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKA  396 (529)
T ss_dssp             HHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHH
T ss_pred             HHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHH
Confidence            9998742211   1133467888999999999999999999999997542221   234568999999999999999999


Q ss_pred             HHHHHHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          329 VAKVLQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       329 a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      |+.+|..+...-..+.    ....+++.|..++..+|++++..+..++..+...
T Consensus       397 A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~  450 (529)
T 3tpo_A          397 AAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  450 (529)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            9999999986544332    3456889999999999999999999999988654

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.83  E-value=2.9e-18  Score=161.70  Aligned_cols=360  Identities=12%  Similarity=0.089  Sum_probs=243.0

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      .+-++|+++.+|..|+++++.+..    ....+.+.|.+.+++.|+++.||+.|+.+++.+....++ . ...+++.+.+
T Consensus       113 ~kDL~~~n~~vr~lAL~~L~~i~~----~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~-~-v~~~~~~l~~  186 (618)
T 1w63_A          113 KNDLNHSTQFVQGLALCTLGCMGS----SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE-L-MEMFLPATKN  186 (618)
T ss_dssp             HHHHSCSSSHHHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG-G-GGGGGGGTTT
T ss_pred             HHhcCCCCHhHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH-H-HHHHHHHHHH
Confidence            445679999999999999999873    345677899999999999999999999999999985433 2 2467888899


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhhhhcC---------------CCchHHHHHHHHHHHhhccccC
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELSS---------------DSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~~~---------------d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      ++.|+++.|+.+|+.++..++..-+. ......++|.+.+.+.               ..+++.+..++++++.++..-+
T Consensus       187 lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~  266 (618)
T 1w63_A          187 LLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD  266 (618)
T ss_dssp             STTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred             HhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence            99999999999999999998753221 0122345555554333               2466777777777766654211


Q ss_pred             h----------------------------------------HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch
Q 016814          147 K----------------------------------------DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI  186 (382)
Q Consensus       147 ~----------------------------------------~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~  186 (382)
                      .                                        ........+.+..++.++++++|..++.+++.+.... +
T Consensus       267 ~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~-p  345 (618)
T 1w63_A          267 DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTD-H  345 (618)
T ss_dssp             HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhC-H
Confidence            0                                        0001123455566677777888888888888777542 2


Q ss_pred             hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--
Q 016814          187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--  264 (382)
Q Consensus       187 ~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  264 (382)
                      +.+ ....+.+..++.|++..+|..+++.+..++..-.-    +.+++-+...+.+.+.++|..++.+++.++..+.+  
T Consensus       346 ~~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~  420 (618)
T 1w63_A          346 NAV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSK  420 (618)
T ss_dssp             HHH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCH
T ss_pred             HHH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccH
Confidence            223 45566777778888888888888887777553221    34566666677778888999999999998886532  


Q ss_pred             HHHH---------------------------------hhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh-----
Q 016814          265 EWAM---------------------------------QHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE-----  304 (382)
Q Consensus       265 ~~~~---------------------------------~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~-----  304 (382)
                      +++.                                 ...++.+.+.+.+  .+......+++++|.++..+...     
T Consensus       421 ~~~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~v~~L~~~l~~~~~~~~~~~~~~wilGEy~~~i~~~~~~~~  500 (618)
T 1w63_A          421 RWHIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE  500 (618)
T ss_dssp             HHHHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHHHHHHHHHHHHCCSCSHHHHHHHHHHHHHHHHHTTCCCSSS
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHHHHHHHHHHhcccccHHHHHHHHHHHhhhHHHhcccccccc
Confidence            1111                                 1233344444442  22334446788888887543210     


Q ss_pred             ----hhhhhhHHHHHhhcc--CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHH
Q 016814          305 ----ITCSRLLPVVINASK--DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSID  376 (382)
Q Consensus       305 ----~~~~~~l~~l~~~l~--d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~  376 (382)
                          ..-..+++.+..+++  +.++.+|..++.++.+++...+.  ....+...|.....|.+.+||..|...+..+.
T Consensus       501 ~~~~~~~~~~~~~l~~~l~~~~~~~~vr~~~lta~~Kl~~~~~~--~~~~l~~~L~~~~~~~d~evrdRA~~y~~ll~  576 (618)
T 1w63_A          501 EPIQVTEDEVLDILESVLISNMSTSVTRGYALTAIMKLSTRFTC--TVNRIKKVVSIYGSSIDVELQQRAVEYNALFK  576 (618)
T ss_dssp             CCCCCCHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHTTCSS--CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             cccCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhCcc--hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHc
Confidence                011233444444443  56788999999999999877643  24556666677788999999999999887654

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.80  E-value=6.2e-18  Score=140.78  Aligned_cols=196  Identities=16%  Similarity=0.146  Sum_probs=144.7

Q ss_pred             cChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHH
Q 016814           28 LEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCR  104 (382)
Q Consensus        28 ~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~  104 (382)
                      +++.++...+.+-+.+.++|++|..|+.++..|..+++..+.  ......+++.+...+. |++..||..|+.+++.++.
T Consensus         7 ~~~~di~~~l~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~   86 (242)
T 2qk2_A            7 LDPVDILSKMPKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK   86 (242)
T ss_dssp             TSCBCCGGGSCTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             CCcccccccCCHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            445555666777788888999999999999999999987433  1223468888888884 9999999999999999998


Q ss_pred             hhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhh
Q 016814          105 ILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       105 ~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~  182 (382)
                      .+++.  .+...++|.+.+.+.|+++.||..+..++..++...+    .+.++|.+...+++.++.+|..++..++.+..
T Consensus        87 ~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~----~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~  162 (242)
T 2qk2_A           87 GLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS----LEAQQESIVESLSNKNPSVKSETALFIARALT  162 (242)
T ss_dssp             HHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC----HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            77654  4556788888888888888888888888888876544    34566777777777777777777777777655


Q ss_pred             hhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhh
Q 016814          183 VIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF  227 (382)
Q Consensus       183 ~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~  227 (382)
                      ..+++    .....++|.+..+++|+++.||..+..+++.++..+|.+.
T Consensus       163 ~~~~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~  211 (242)
T 2qk2_A          163 RTQPTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKA  211 (242)
T ss_dssp             TCCGGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HcCCCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCHHH
Confidence            44322    1225666777777777777777777777777776666543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.79  E-value=1.1e-16  Score=150.94  Aligned_cols=317  Identities=15%  Similarity=0.085  Sum_probs=215.7

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL   84 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l   84 (382)
                      +..+++...|+.+--.+..+++.-  .+..-.+.+.+.+-++|+++.+|..|+++++.+.    .......++|.+.+++
T Consensus        78 ~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~l~in~l~kDL~~~n~~vr~lAL~~L~~i~----~~~~~~~l~~~l~~~L  151 (618)
T 1w63_A           78 LIASQKFTDKRIGYLGAMLLLDER--QDVHLLMTNCIKNDLNHSTQFVQGLALCTLGCMG----SSEMCRDLAGEVEKLL  151 (618)
T ss_dssp             HHHSSSHHHHHHHHHHHHHHCCCC--HHHHHHHHHHHHHHHSCSSSHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred             HHcCCchHHHHHHHHHHHHHhCCC--cHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHhcC----CHHHHHHHHHHHHHHH
Confidence            455666777776666555555422  2223346677778889999999999999999876    2233456789999999


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH-hHHHhhHHHHHHhhc
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-ATIEQLLPIFLSLLK  163 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~  163 (382)
                      .|+++.||++|+.+++.+....+ + ..+.+++.+.+++.|.++.|+..++.++..++..-+.. .....++|.+.+.+.
T Consensus       152 ~~~~~~VRk~A~~al~~l~~~~p-~-~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~~~v~~l~~~L~  229 (618)
T 1w63_A          152 KTSNSYLRKKAALCAVHVIRKVP-E-LMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILK  229 (618)
T ss_dssp             HSCCHHHHHHHHHHHHHHHHHCG-G-GGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHCh-H-HHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999987543 3 23478889999999999999999999999998653210 122345555554443


Q ss_pred             C---------------CChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhh
Q 016814          164 D---------------EFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       164 d---------------~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~  222 (382)
                      +               .++-.+..+++.++.+...- + ...+.+.+.+..++.      +.+..|...+++.+..+.. 
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~-~-~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~-  306 (618)
T 1w63_A          230 NLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRND-D-DSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKS-  306 (618)
T ss_dssp             HHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTC-H-HHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCC-
T ss_pred             HHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCC-H-HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCC-
Confidence            2               46777777888887776431 1 112344555555442      2233566666666554321 


Q ss_pred             hchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814          223 LGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       223 ~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  302 (382)
                        .........+.+..++.+++.++|..|+.+++.++...+ + ......+.++..+.|++..+|..++..+..++..-.
T Consensus       307 --~~~l~~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p-~-~~~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n  382 (618)
T 1w63_A          307 --ESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH-N-AVQRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNN  382 (618)
T ss_dssp             --CHHHHHHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH-H-HHGGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS
T ss_pred             --CHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH-H-HHHHHHHHHHHHccCCChhHHHHHHHHHHHHccccc
Confidence              112223456667777888888888888888888887532 2 233456677777888888888888888888775433


Q ss_pred             hhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       303 ~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                      .    ..+++.+..++.+.+.++|..++.+++.++..+
T Consensus       383 v----~~iv~eL~~~l~~~d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          383 I----RGMMKELLYFLDSCEPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             T----HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHSS
T ss_pred             H----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence            2    345666666776777888888888888887765

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=99.79  E-value=4.8e-18  Score=141.43  Aligned_cols=182  Identities=16%  Similarity=0.200  Sum_probs=95.4

Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH--HH
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE--WA  267 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~--~~  267 (382)
                      -|.+.+.+.|++|+.|..++..+..++...+.   ..+ ..+++.+...+. |++..||..|+.+++.++..+|..  .+
T Consensus        17 ~~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~   95 (242)
T 2qk2_A           17 PKDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY   95 (242)
T ss_dssp             CTTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred             CHHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33444455555555555555555555543211   111 345555555552 555555555556655555555442  23


Q ss_pred             HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----
Q 016814          268 MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----  343 (382)
Q Consensus       268 ~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----  343 (382)
                      ...++|.+++.++|++..+|.++..++..+....+.    ..++|.+...++++++.+|..++.+++.+....+++    
T Consensus        96 ~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~  171 (242)
T 2qk2_A           96 ASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL----EAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNK  171 (242)
T ss_dssp             HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH----HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccH
Confidence            444555555555555555555555555555544331    345555555555555555655555555554443221    


Q ss_pred             HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          344 MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       344 ~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .....++|.+.++++|++++||..|..+++.++..+|
T Consensus       172 ~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg  208 (242)
T 2qk2_A          172 KLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMG  208 (242)
T ss_dssp             HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcC
Confidence            2234555555555555555566666555555555554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.77  E-value=4.7e-17  Score=132.57  Aligned_cols=188  Identities=19%  Similarity=0.194  Sum_probs=134.9

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  114 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  114 (382)
                      +..++.+.+.+.|+++.+|..++..|+.+..        ...+|.+.+++.|+++.||..++.+|+.+..        ..
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~   81 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ER   81 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GG
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HH
Confidence            4456666677778888888888888876542        3467778888888888888888888877643        24


Q ss_pred             hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814          115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  194 (382)
Q Consensus       115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll  194 (382)
                      .++.+.++++|+++.||..++.+++.+..        +..+|.+.++++|+++.||..++.+++.+..        ...+
T Consensus        82 ~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~  145 (211)
T 3ltm_A           82 AVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAV  145 (211)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHH
Confidence            56777777888888888888888887753        2456777777888888888888888877642        3456


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh
Q 016814          195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEF  262 (382)
Q Consensus       195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  262 (382)
                      |.+..+++|+++.||..++..++.+..        +...+.+..+++|+++.||..|..+|+.+....
T Consensus       146 ~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          146 EPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence            777777788888888888888777632        456667777777788888888888877776544

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.76  E-value=8.1e-17  Score=130.13  Aligned_cols=187  Identities=19%  Similarity=0.202  Sum_probs=143.7

Q ss_pred             hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 016814           33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI  112 (382)
Q Consensus        33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~  112 (382)
                      ..+...+.+.+.++|+++.+|..++..|+.+..        ...++.+.+.+.|+++.||..++.+|+.+..        
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            345566777888888888999888888886542        2457888888888888888888888887643        


Q ss_pred             HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814          113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  192 (382)
Q Consensus       113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~  192 (382)
                      ...++.+.++++|+++.||..++.+++.+..        +..++.+.++++|+++.||..++.+++.+..        ..
T Consensus        75 ~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~  138 (201)
T 3ltj_A           75 ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ER  138 (201)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GG
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HH
Confidence            2456778888888888888888888888753        3466777788888888888888888887743        45


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      .+|.+..+++|+++.||..++..++.+..        +...+.+..++.|+++.||..|..+++.+.
T Consensus       139 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          139 AVEPLIKALKDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             GHHHHHHHTTCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            66777888888888888888888887631        356677777788888888888888887654

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.76  E-value=3e-15  Score=140.74  Aligned_cols=363  Identities=13%  Similarity=0.135  Sum_probs=238.5

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc--cCCCHHHHHHHHHHHHHHHHHhCCcccc-cchHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS--QDKSWRVRYMVANQLYELCEAVGPEPTR-MDLVPA   79 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~--~d~~~~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~   79 (382)
                      ++=++|+++.+|-.|+++++.+..    .+..+.+.|.+.+++  .|.++.||+.|+-++..+....+ +... ..+++.
T Consensus       117 ~kDl~~~n~~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~  191 (621)
T 2vgl_A          117 KNDLASRNPTFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSR  191 (621)
T ss_dssp             HHHHHSCCHHHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHH
T ss_pred             HHhcCCCCHHHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHH
Confidence            344679999999999999998854    346678999999999  99999999999999999998543 3322 368999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCC--C-----------chHHHHHHHHHHHhhccc
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSD--S-----------SQHVRSALASVIMGMAPL  144 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d--~-----------~~~vr~~a~~~l~~l~~~  144 (382)
                      +.+++.|+++.|+.+|+..+..++..-+..  ...+.++..+..++.+  .           +++.+...++.+..++..
T Consensus       192 l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~  271 (621)
T 2vgl_A          192 VVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPP  271 (621)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSC
T ss_pred             HHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCC
Confidence            999999999999999999999887643221  1122222333332211  1           344444444444444321


Q ss_pred             cC-------------------------------------------------hHhHHHhhHHHHHHhhcCCChHHHHHHHH
Q 016814          145 LG-------------------------------------------------KDATIEQLLPIFLSLLKDEFPDVRLNIIS  175 (382)
Q Consensus       145 ~~-------------------------------------------------~~~~~~~l~~~l~~~l~d~~~~vr~~~~~  175 (382)
                      -+                                                 .........+.+..++.+.++++|-.++.
T Consensus       272 ~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~~~~~~L~~~L~~~~~niry~aL~  351 (621)
T 2vgl_A          272 EDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLALE  351 (621)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHSSCSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcCCCcchHHHHHH
Confidence            11                                                 01112334455556666677788888888


Q ss_pred             hhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814          176 KLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANN  254 (382)
Q Consensus       176 ~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~  254 (382)
                      ++..+....+.........+.+..++. |++..+|..+++.+..++..   +. .+.++.-+...+.+.+.+.|..++..
T Consensus       352 ~l~~l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~---~N-v~~Iv~eL~~yl~~~d~~~~~~~v~~  427 (621)
T 2vgl_A          352 SMCTLASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR---SN-AQQIVAEMLSYLETADYSIREEIVLK  427 (621)
T ss_dssp             HHHHHTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH---HH-HHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh---hh-HHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            887776554322223556677777777 88888998888887776532   21 24566667777777888999999999


Q ss_pred             HHHHHHHhCh--HHHHhh---------------------------------hHHHHHhhhcCcc--hHHHHHHHHHHHHh
Q 016814          255 LKRLAEEFGP--EWAMQH---------------------------------ITPQVLEMINNPH--YLYRMTILRAISLL  297 (382)
Q Consensus       255 l~~~~~~~~~--~~~~~~---------------------------------l~~~l~~~l~~~~--~~~r~~a~~~l~~l  297 (382)
                      ++.++..+.+  +++.+.                                 .+..+.+.+.++.  ..+-..+++.+|..
T Consensus       428 I~~la~k~~~~~~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~~~~l~~~l~~~~~~~~li~~~~wilGEy  507 (621)
T 2vgl_A          428 VAILAEKYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYAAKTVFEALQAPACHENLVKVGGYILGEF  507 (621)
T ss_dssp             HHHHHHHHCSSTHHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHHHHHHHHHHcCccchHHHHHHHHHHhcch
Confidence            9998877643  222211                                 2222334444443  23444556788777


Q ss_pred             ccccChhhh--hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC--CCCccHHhHHHHHHH
Q 016814          298 APVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE--DPDVDVRFFATQAIQ  373 (382)
Q Consensus       298 ~~~~~~~~~--~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~--d~~~~vr~~a~~al~  373 (382)
                      +..+.....  -..++..+...+.+.++.||..++.++.+++...+.  ....+...+.....  |.+.+||..|..-..
T Consensus       508 ~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~p~--~~~~i~~~l~~~~~~~~~d~evrdRA~~y~~  585 (621)
T 2vgl_A          508 GNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLFPE--VKATIQDVLRSDSQLKNADVELQQRAVEYLR  585 (621)
T ss_dssp             THHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCGG--GHHHHHHHHSSHHHHSCSSHHHHHHHHHHHH
T ss_pred             HHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHChH--HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            654432111  124455666667788899999999999999876542  33455555555666  999999999988776


Q ss_pred             HHH
Q 016814          374 SID  376 (382)
Q Consensus       374 ~~~  376 (382)
                      -+.
T Consensus       586 Ll~  588 (621)
T 2vgl_A          586 LST  588 (621)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            553

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.75  E-value=1.2e-16  Score=130.28  Aligned_cols=182  Identities=20%  Similarity=0.190  Sum_probs=152.4

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ..+++|+++.+|..|+..++.+..        +...|.+.+.+.|+++.+|..++..|+.+..        ...++.+.+
T Consensus        25 ~~~L~~~~~~vR~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~   88 (211)
T 3ltm_A           25 IKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK   88 (211)
T ss_dssp             HHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred             HHHHcCCCHHHHHHHHHHHHHhCC--------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence            456789999999999999988754        3567777888899999999999999998752        356899999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  162 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  162 (382)
                      +++|+++.||..++.+|+.+..        ...++.+.++++|+++.||..++.+++.+..        +..++.+.+++
T Consensus        89 ~l~~~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l  152 (211)
T 3ltm_A           89 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKAL  152 (211)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence            9999999999999999998754        3467889999999999999999999999853        35678889999


Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc
Q 016814          163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG  224 (382)
Q Consensus       163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  224 (382)
                      +|+++.||..++.+++.+..        +..++.+..+++|+++.||..+...|..+....+
T Consensus       153 ~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          153 KDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFNH  206 (211)
T ss_dssp             TCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHC------
T ss_pred             cCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCC
Confidence            99999999999999998853        5678888888999999999999999988765443

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.75  E-value=1.7e-16  Score=128.17  Aligned_cols=178  Identities=20%  Similarity=0.203  Sum_probs=152.1

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      -.+++|+++.+|..|+..++.+..        +...+.+.+.+.|+++.+|..++..|+.+..        ...++.+.+
T Consensus        20 i~~L~~~~~~vr~~A~~~L~~~~~--------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------~~~~~~L~~   83 (201)
T 3ltj_A           20 IKNLQDDSYYVRRAAAYALGKIGD--------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------ERAVEPLIK   83 (201)
T ss_dssp             HHHTTCSCHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------HHHHHHHHH
Confidence            357889999999999999988754        2456677788899999999999999998642        356899999


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  162 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  162 (382)
                      .+.|+++.||..++.+|+.+..        ...++.+.++++|+++.||..++.+++.+..        +..++.+..++
T Consensus        84 ~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~~~~~~L~~~l  147 (201)
T 3ltj_A           84 ALKDEDGWVRQSAAVALGQIGD--------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------ERAVEPLIKAL  147 (201)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHCC--------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------GGGHHHHHHHT
T ss_pred             HHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------HHHHHHHHHHH
Confidence            9999999999999999998754        2467888899999999999999999999863        35778899999


Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      +|+++.||..++.+++.+..        +..++.+..+++|+++.||..+.+.+..+.
T Consensus       148 ~d~~~~vr~~A~~aL~~~~~--------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          148 KDEDGWVRQSAADALGEIGG--------ERVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             TCSSHHHHHHHHHHHHHHCS--------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             cCCCHHHHHHHHHHHHHhCc--------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence            99999999999999998842        567888888889999999999999998764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=99.72  E-value=1.2e-14  Score=136.73  Aligned_cols=353  Identities=11%  Similarity=0.030  Sum_probs=245.3

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      ++..|+.++.-+..+-- .|.+  .+...+-+.+++.+++...|+.+.-.+..+++.-  ....--+++.+.+-++|+++
T Consensus        51 ~~~~k~~~l~Kli~l~~-~G~d--~s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~--~e~~~L~iN~l~kDl~~~n~  125 (621)
T 2vgl_A           51 DGYSKKKYVCKLLFIFL-LGHD--IDFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSN--SELIRLINNAIKNDLASRNP  125 (621)
T ss_dssp             CHHHHHHHHHHHHHHHH-HSCC--CCSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC--HHHHHHHHHHHHHHHHSCCH
T ss_pred             CHHHHHHHHHHHHHHHH-cCCC--CchhHHHHHHHhcCCCHHHHHHHHHHHHHHccCC--cHHHHHHHHHHHHhcCCCCH
Confidence            45555555554444322 2322  2345555667889999999999999888776321  11112357778888899999


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhc--CCCchHHHHHHHHHHHhhccccChHhHH-HhhHHHHHHhhcCCC
Q 016814           90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLGKDATI-EQLLPIFLSLLKDEF  166 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~~~~~~-~~l~~~l~~~l~d~~  166 (382)
                      .+|..|+.+++.+..    ..+.+.++|.+.+++  .|.++.||..|+.++..+....+ +... +.+++.+.++++|.+
T Consensus       126 ~ir~lALr~L~~i~~----~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p-~~~~~~~~~~~l~~lL~d~d  200 (621)
T 2vgl_A          126 TFMGLALHCIANVGS----REMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP-DLVPMGDWTSRVVHLLNDQH  200 (621)
T ss_dssp             HHHHHHHHHHHHHCC----HHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG-GGCCCCSCHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhhccCC----HHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh-hhcCchhHHHHHHHHhCCCC
Confidence            999999999998743    335678999999999  99999999999999999987433 3322 378999999999999


Q ss_pred             hHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHhcCC-------------CchHHHHHHHHhHHHHhhhchhhhHH
Q 016814          167 PDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELAEDR-------------HWRVRLAIIEYIPLLASQLGVGFFDD  230 (382)
Q Consensus       167 ~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~~d~-------------~~~vr~~~~~~l~~l~~~~~~~~~~~  230 (382)
                      +.|+.+++..+..++..-+ +.+   .+.++..+.+++.+.             ++-.+..+++.+..+...-.++ ..+
T Consensus       201 ~~V~~~a~~~l~~i~~~~~-~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~-~~~  278 (621)
T 2vgl_A          201 LGVVTAATSLITTLAQKNP-EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPA-VRG  278 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHCH-HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHH-HHH
T ss_pred             ccHHHHHHHHHHHHHHhCh-HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHH-HHH
Confidence            9999999999999876432 222   233444444444321             3456777777777665321122 223


Q ss_pred             HHHHHHHHHh---cc---------ch--hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHH
Q 016814          231 KLGALCMQWL---QD---------KV--YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL  296 (382)
Q Consensus       231 ~l~~~l~~~l---~d---------~~--~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~  296 (382)
                      .+.+.+...+   .+         .+  ..|...+++++-.+.   ....+.....+.+..++.+++..+|..++.++..
T Consensus       279 ~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~---~~~~~~~~~~~~L~~~L~~~~~niry~aL~~l~~  355 (621)
T 2vgl_A          279 RLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---SEPNLLVRACNQLGQFLQHRETNLRYLALESMCT  355 (621)
T ss_dssp             HHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcC---CcHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHH
Confidence            3333333332   11         12  266666666665543   2334556677888888888889999999999999


Q ss_pred             hccccChhhhhhhhHHHHHhhcc-CCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          297 LAPVMGSEITCSRLLPVVINASK-DRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       297 l~~~~~~~~~~~~~l~~l~~~l~-d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      ++...+...+.....+.++.++. |++..+|..+++.+..++..    .....++..|.+.+.+.+.+.|..+..+++.+
T Consensus       356 l~~~~~~~~~~~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~----~Nv~~Iv~eL~~yl~~~d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          356 LASSEFSHEAVKTHIETVINALKTERDVSVRQRAVDLLYAMCDR----SNAQQIVAEMLSYLETADYSIREEIVLKVAIL  431 (621)
T ss_dssp             HTTCTTTHHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCH----HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHhccCcHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHcCh----hhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            98765422355667788888888 99999999999999888643    23466777777777788999999999999998


Q ss_pred             HHHhcc
Q 016814          376 DHVMMS  381 (382)
Q Consensus       376 ~~~~~~  381 (382)
                      +..+.+
T Consensus       432 a~k~~~  437 (621)
T 2vgl_A          432 AEKYAV  437 (621)
T ss_dssp             HHHHCS
T ss_pred             HHhcCC
Confidence            876543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.71  E-value=8.4e-14  Score=138.45  Aligned_cols=367  Identities=11%  Similarity=0.074  Sum_probs=234.6

Q ss_pred             CchHHHHHHHHHHHHHHhcc-C--------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814            9 DQDSVRLLAVEGCAALGKLL-E--------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPA   79 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~-~--------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~   79 (382)
                      .+..+|..|+..+....... .        ++.....+...+.+.+.+.+..+|..++.+++.++..-.++ .+++++|.
T Consensus        49 ~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik~~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~Wp~ll~~  127 (960)
T 1wa5_C           49 LPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPD-RWPTLLSD  127 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-TCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-chhHHHHH
Confidence            46789999999999877642 1        22233445545555554455899999999999999875553 47889999


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhCH-----H------HHHHhhhHhhhh-------hcCCCch---------HHHH
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILNP-----E------LAIQHILPCVKE-------LSSDSSQ---------HVRS  132 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~-----~------~~~~~il~~l~~-------~~~d~~~---------~vr~  132 (382)
                      +.+.++++++..+..++.++..+++....     +      .....+.|.+..       .+++...         .++.
T Consensus       128 L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~  207 (960)
T 1wa5_C          128 LASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLL  207 (960)
T ss_dssp             HHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHH
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            99999988888999999999999886531     1      112223332222       2444322         2233


Q ss_pred             HHHHHHHhhcc-ccChH--hHHHhhHHHHHHhhcC-----------CC----hHHHHHHHHhhHHhhhhhchhh--Hhhh
Q 016814          133 ALASVIMGMAP-LLGKD--ATIEQLLPIFLSLLKD-----------EF----PDVRLNIISKLDQVNQVIGIDL--LSQS  192 (382)
Q Consensus       133 ~a~~~l~~l~~-~~~~~--~~~~~l~~~l~~~l~d-----------~~----~~vr~~~~~~l~~~~~~~~~~~--~~~~  192 (382)
                      .+++++..+.. .++..  ...+..++.+.+.+..           ..    +.+|..++..+..+....+...  +.+.
T Consensus       208 ~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~  287 (960)
T 1wa5_C          208 VLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINE  287 (960)
T ss_dssp             HHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555554431 12221  1124455666655432           11    3578888888888776554321  1234


Q ss_pred             HHHHHHHHhc-----CCCchHHHHHHHHhHHHHhhhc-hh-----hhHHHHH-HHHHHHhc-------------------
Q 016814          193 LLPAIVELAE-----DRHWRVRLAIIEYIPLLASQLG-VG-----FFDDKLG-ALCMQWLQ-------------------  241 (382)
Q Consensus       193 llp~l~~~~~-----d~~~~vr~~~~~~l~~l~~~~~-~~-----~~~~~l~-~~l~~~l~-------------------  241 (382)
                      +++.+.+.+.     .....++..+++.+..+++.-. ..     .+.+.++ +.+...+.                   
T Consensus       288 ~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~  367 (960)
T 1wa5_C          288 FIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEYIRR  367 (960)
T ss_dssp             HHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHh
Confidence            4444444443     3345778888888877764211 11     2233444 44444331                   


Q ss_pred             ----cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc------CcchHHHHHHHHHHHHhcccc-----Chh--
Q 016814          242 ----DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN------NPHYLYRMTILRAISLLAPVM-----GSE--  304 (382)
Q Consensus       242 ----d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~------~~~~~~r~~a~~~l~~l~~~~-----~~~--  304 (382)
                          +..+.+|.+|...+..++..+| +.....+++.+.+.+.      +++|+.|++|+.+++.++...     +..  
T Consensus       368 d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~  446 (960)
T 1wa5_C          368 DLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST  446 (960)
T ss_dssp             HHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred             ccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccc
Confidence                1123689999999999999887 4455567777766665      678999999999999997542     111  


Q ss_pred             ----hhhhhhHHHHHhhccCC---CccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          305 ----ITCSRLLPVVINASKDR---VPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       305 ----~~~~~~l~~l~~~l~d~---~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                          .+...+...++..+.|+   ++.+|..++.+++.+...+.+ .....+++.+.+.+.|++..||..|+.|+..+..
T Consensus       447 ~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (960)
T ss_dssp             CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHh
Confidence                11122223344556676   788999999999999988754 4577888888888889999999999999999876


Q ss_pred             H
Q 016814          378 V  378 (382)
Q Consensus       378 ~  378 (382)
                      .
T Consensus       526 ~  526 (960)
T 1wa5_C          526 I  526 (960)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.71  E-value=1.6e-14  Score=131.35  Aligned_cols=337  Identities=13%  Similarity=0.141  Sum_probs=205.3

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH----H
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE----L  110 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~----~  110 (382)
                      +|.+.+++.++++.++..++..|..++..-..   .......+|.+++++.++++.++..|+.+|.+++.. .++    .
T Consensus         4 l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~-~~~~k~~i   82 (457)
T 1xm9_A            4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFR-STTNKLET   82 (457)
T ss_dssp             HHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSS-CHHHHHHH
T ss_pred             HHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            34445555556666777777777766531111   111234567777777776677777777777776542 111    2


Q ss_pred             HHHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccC-hHhHHHhhHHHHHHhh--------cC--------CChHHHHH
Q 016814          111 AIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLG-KDATIEQLLPIFLSLL--------KD--------EFPDVRLN  172 (382)
Q Consensus       111 ~~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~-~~~~~~~l~~~l~~~l--------~d--------~~~~vr~~  172 (382)
                      .....+|.+.+++. +.++.++..++.+|..++..-. +....+..+|.+.+++        .+        .++.+...
T Consensus        83 ~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~  162 (457)
T 1xm9_A           83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHH
Confidence            23355677777776 5666777777777777665411 1112235566666666        22        13445556


Q ss_pred             HHHhhHHhhhhhch--hhHhh--hHHHHHHHHhcC------CCchHHHHHHHHhHHHHhh--------------------
Q 016814          173 IISKLDQVNQVIGI--DLLSQ--SLLPAIVELAED------RHWRVRLAIIEYIPLLASQ--------------------  222 (382)
Q Consensus       173 ~~~~l~~~~~~~~~--~~~~~--~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~--------------------  222 (382)
                      ++.++..++.. ..  +.+.+  ..+|.+..++.+      .+.++...++..+..++..                    
T Consensus       163 a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~  241 (457)
T 1xm9_A          163 ATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAY  241 (457)
T ss_dssp             HHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----
T ss_pred             HHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhccccccccc
Confidence            66666666543 11  11111  455555555542      2333333333333332100                    


Q ss_pred             --------h------------------------ch-hhhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChH---
Q 016814          223 --------L------------------------GV-GFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE---  265 (382)
Q Consensus       223 --------~------------------------~~-~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~---  265 (382)
                              +                        |. ..+....++.+..++.+ .++.+++.|+.+++.++..-+..   
T Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~  321 (457)
T 1xm9_A          242 TEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSG  321 (457)
T ss_dssp             ------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHH
T ss_pred             ccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHH
Confidence                    0                        11 12234567777777765 46899999999999997532221   


Q ss_pred             ----HH-HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhccCCCc------cHHHHHHHHH
Q 016814          266 ----WA-MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASKDRVP------NIKFNVAKVL  333 (382)
Q Consensus       266 ----~~-~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~------~vR~~a~~~l  333 (382)
                          .+ ....+|.+.+++.+++..++..|++++..++..-... ......+|.++..+.+.++      ++...++.++
T Consensus       322 ~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l  401 (457)
T 1xm9_A          322 MSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV  401 (457)
T ss_dssp             HHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHH
Confidence                11 1467899999999999999999999999998643222 3456789999999988754      4777888888


Q ss_pred             HHHhhhhhHH---HHHHhHHHHHHHhcCCC-CccHHhHHHHHHHHHH
Q 016814          334 QSLIPIVDQS---MVEKTIRPCLVELTEDP-DVDVRFFATQAIQSID  376 (382)
Q Consensus       334 ~~i~~~~~~~---~~~~~i~~~l~~l~~d~-~~~vr~~a~~al~~~~  376 (382)
                      +.+...-...   ......++.|..++... +.+++..|...+..+.
T Consensus       402 ~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~  448 (457)
T 1xm9_A          402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            8887533221   22357888899988887 8899999999887653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.70  E-value=7.2e-14  Score=128.24  Aligned_cols=346  Identities=14%  Similarity=0.156  Sum_probs=246.8

Q ss_pred             hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH
Q 016814           32 DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP  108 (382)
Q Consensus        32 ~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~  108 (382)
                      .+.+.-+|.+.+++...++.++..++..|..++..-..   .......+|.+++++.+++..++..|+.+|.+++..-+.
T Consensus        44 ~~~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~  123 (584)
T 3l6x_A           44 NWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQ  123 (584)
T ss_dssp             CCCCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCH
T ss_pred             CcccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCH
Confidence            34455678888888889999999999999988842111   122235799999999999999999999999999763222


Q ss_pred             H----HHHHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccCh-HhHHHhhHHHHHHhh------------------cC
Q 016814          109 E----LAIQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK-DATIEQLLPIFLSLL------------------KD  164 (382)
Q Consensus       109 ~----~~~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~~~l~~~l------------------~d  164 (382)
                      +    ......+|.+..++.+ .+..++..++.+|..++..-.. ..+...-+|.+.+++                  ..
T Consensus       124 ~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          124 DNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhccccccccccccccccccc
Confidence            2    3345678999999886 5788999999999999863221 222344567777765                  12


Q ss_pred             CChHHHHHHHHhhHHhhhhhc--hhhHh--hhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhhhc----------
Q 016814          165 EFPDVRLNIISKLDQVNQVIG--IDLLS--QSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQLG----------  224 (382)
Q Consensus       165 ~~~~vr~~~~~~l~~~~~~~~--~~~~~--~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~~~----------  224 (382)
                      +++.|+..++.+|..++..-.  ...+.  ..+++.|..+++      +.+.+....++..|..++....          
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            357999999999988865321  11111  234555655543      3556777777777777664321          


Q ss_pred             -----------------hh-hhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhCh--HH----H-HhhhHHHHHhh
Q 016814          225 -----------------VG-FFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGP--EW----A-MQHITPQVLEM  278 (382)
Q Consensus       225 -----------------~~-~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~--~~----~-~~~l~~~l~~~  278 (382)
                                       .+ .+....++.+..++.+ .++.+++.|+.+|..++..-+.  ..    + ....+|.+.++
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~L  363 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADL  363 (584)
T ss_dssp             ------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHG
T ss_pred             hhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHH
Confidence                             11 1234567888888864 5799999999999999742211  11    1 14569999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccCh-hhhhhhhHHHHHhhccCCC--------ccHHHHHHHHHHHHhhhhh---HHHHH
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDRV--------PNIKFNVAKVLQSLIPIVD---QSMVE  346 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~~--------~~vR~~a~~~l~~i~~~~~---~~~~~  346 (382)
                      +.+++..++..|+.++..++..-.. ..+....+|.|..+|.+.+        ..++..++.+|+.+...-.   .....
T Consensus       364 L~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~  443 (584)
T 3l6x_A          364 LTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRE  443 (584)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999999999999999876543 3456788999999998763        4678889999998864322   12345


Q ss_pred             HhHHHHHHHhcCCC--CccHHhHHHHHHHHHHH
Q 016814          347 KTIRPCLVELTEDP--DVDVRFFATQAIQSIDH  377 (382)
Q Consensus       347 ~~i~~~l~~l~~d~--~~~vr~~a~~al~~~~~  377 (382)
                      ...+|.|..++.+.  ...++..|+.++..+..
T Consensus       444 ~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~  476 (584)
T 3l6x_A          444 TQGIEKLVLINKSGNRSEKEVRAAALVLQTIWG  476 (584)
T ss_dssp             TTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHT
T ss_pred             CCChHHHHHHHhCCCCChHHHHHHHHHHHHHHc
Confidence            67899999988875  78899999999998763

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.69  E-value=1.1e-15  Score=126.84  Aligned_cols=184  Identities=12%  Similarity=0.177  Sum_probs=98.9

Q ss_pred             HHHHhcCCCchHHHHHHHHhHH-HHhhhc-----hhhhHHHHHHHHHHHh-ccchhHHHHHHHHHHHHHHHHhC-h--H-
Q 016814          197 IVELAEDRHWRVRLAIIEYIPL-LASQLG-----VGFFDDKLGALCMQWL-QDKVYSIRDAAANNLKRLAEEFG-P--E-  265 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~-l~~~~~-----~~~~~~~l~~~l~~~l-~d~~~~vr~~a~~~l~~~~~~~~-~--~-  265 (382)
                      +.+.+.+++|..|.+++..+.. +++...     ...+ ..++..+.+.+ +|.+..||..|+.+++.+++.++ +  + 
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~-~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~   99 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNY-SNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK   99 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence            3344455666666666666555 543211     1111 23455555555 46666666666666666665554 3  2 


Q ss_pred             HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-h--hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          266 WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-I--TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       266 ~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~--~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      .+...++|.+++.++|+...+|.++..++..+.+.+++. .  +.+.+++.++..++++++.+|..++.+++.+....+.
T Consensus       100 ~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          100 DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            344455666666666665566666666655555554321 1  1345555555666655666666666666666554442


Q ss_pred             --H---HHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          343 --S---MVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       343 --~---~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                        .   ... ..++|.+.++++|++++||..|..+++.++.++|+
T Consensus       180 ~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~  224 (249)
T 2qk1_A          180 GYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGM  224 (249)
T ss_dssp             CSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCS
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCH
Confidence              1   123 45566666666666666666666666666665554

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=99.68  E-value=7e-14  Score=139.04  Aligned_cols=370  Identities=12%  Similarity=0.082  Sum_probs=233.0

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----cc-------ccchH
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PT-------RMDLV   77 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~-------~~~ll   77 (382)
                      +++.+|..+..++..++..--+ ..|+.++|.+.+.+++++...+..++.++..+++.....    ..       .....
T Consensus        97 ~~~~ir~~l~~~ia~ia~~d~p-~~Wp~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~  175 (960)
T 1wa5_C           97 LPNNLQVQIGEAISSIADSDFP-DRWPTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFT  175 (960)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhhCc-cchhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence            4489999999999999987444 469999999999998888889999999999999866421    00       01122


Q ss_pred             H----HH---HHhcCCCcH---HHH------HHHHHHHHHHHHh-hCHH--HHHHhhhHhhhhhcC--------C---C-
Q 016814           78 P----AY---VRLLRDNEA---EVR------IAAAGKVTKFCRI-LNPE--LAIQHILPCVKELSS--------D---S-  126 (382)
Q Consensus        78 ~----~l---~~~l~d~~~---~VR------~~a~~~l~~l~~~-~~~~--~~~~~il~~l~~~~~--------d---~-  126 (382)
                      |    .+   .+.+.++..   .+|      ..+++++..+... .+..  ......++.+...+.        |   . 
T Consensus       176 ~~ll~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~  255 (960)
T 1wa5_C          176 APFLNLLKTVDEQITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEH  255 (960)
T ss_dssp             HHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------C
T ss_pred             HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcccCCccccc
Confidence            2    22   222454422   233      3344555443211 1211  111233344444331        1   1 


Q ss_pred             ---chHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhc-----CCChHHHHHHHHhhHHhhhhhc------hhhHh
Q 016814          127 ---SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIG------IDLLS  190 (382)
Q Consensus       127 ---~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~-----d~~~~vr~~~~~~l~~~~~~~~------~~~~~  190 (382)
                         .+.+|..+++++..+....++..  ..+.+++.+.+.+.     ...+.++..++..+..+++.-.      ...+.
T Consensus       256 ~~~~~~vk~~~~~~l~~l~~~~~~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l  335 (960)
T 1wa5_C          256 ASVLIKVKSSIQELVQLYTTRYEDVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAM  335 (960)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHH
Confidence               14688888998888876555332  23455555555553     3457888888888877653211      00122


Q ss_pred             hhHH-HHHHHHh-----------------------cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc-----
Q 016814          191 QSLL-PAIVELA-----------------------EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ-----  241 (382)
Q Consensus       191 ~~ll-p~l~~~~-----------------------~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~-----  241 (382)
                      ..++ +.+...+                       .+..|..|.++...+..++..++ +...+.+++.+...+.     
T Consensus       336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~-~~v~~~~l~~i~~~l~~~~~~  414 (960)
T 1wa5_C          336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE-VLVTNIFLAHMKGFVDQYMSD  414 (960)
T ss_dssp             HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc-hhHHHHHHHHHHHHHHHhccC
Confidence            3333 2332221                       12345789999999999999888 4445567777777776     


Q ss_pred             -cchhHHHHHHHHHHHHHHHHh-----ChH------HHHhhhHHHHHhhhcCc---chHHHHHHHHHHHHhccccChhhh
Q 016814          242 -DKVYSIRDAAANNLKRLAEEF-----GPE------WAMQHITPQVLEMINNP---HYLYRMTILRAISLLAPVMGSEIT  306 (382)
Q Consensus       242 -d~~~~vr~~a~~~l~~~~~~~-----~~~------~~~~~l~~~l~~~l~~~---~~~~r~~a~~~l~~l~~~~~~~~~  306 (382)
                       +++|..|++|+.+++.++...     |..      .+..-+...+...+.++   ++.+|..++++++.+++.+.++ +
T Consensus       415 ~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~~-~  493 (960)
T 1wa5_C          415 PSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-Q  493 (960)
T ss_dssp             ---CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-H
T ss_pred             cchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCHH-H
Confidence             678999999999999998642     111      11111222334445666   8999999999999999888654 7


Q ss_pred             hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh----------HH---HHHHhHHHHHHHhcCCCC-----ccHHhHH
Q 016814          307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----------QS---MVEKTIRPCLVELTEDPD-----VDVRFFA  368 (382)
Q Consensus       307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~----------~~---~~~~~i~~~l~~l~~d~~-----~~vr~~a  368 (382)
                      ...++|.+++.+.|+++.||..|+.++..+.....          .+   .+...+++.|..+++...     ......+
T Consensus       494 l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l  573 (960)
T 1wa5_C          494 LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFL  573 (960)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHH
T ss_pred             HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHH
Confidence            88899999999999999999999999999887421          22   234556666666655431     1134577


Q ss_pred             HHHHHHHHHHhcc
Q 016814          369 TQAIQSIDHVMMS  381 (382)
Q Consensus       369 ~~al~~~~~~~~~  381 (382)
                      .+++..++..+++
T Consensus       574 ~~al~~vv~~~~~  586 (960)
T 1wa5_C          574 MRSIFRVLQTSED  586 (960)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888777654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.67  E-value=3.3e-14  Score=118.98  Aligned_cols=226  Identities=13%  Similarity=0.103  Sum_probs=144.2

Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--h-hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---hhhh
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--D-LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---VGFF  228 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~-~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~  228 (382)
                      +|.+.++++++++.+|..++..+..+...-+.  . ......+|.+.++++++++.+|..++..+..++..-.   ....
T Consensus         4 i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~   83 (252)
T 4hxt_A            4 VEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIV   83 (252)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34445555555555555555555555432210  0 1112456666666666666666666666666654211   1112


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--  303 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--  303 (382)
                      ....+|.+..++.++++.+|..++.+++.++.....   .......+|.+.+++.++++.+|..++.+++.++.....  
T Consensus        84 ~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  163 (252)
T 4hxt_A           84 DAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAI  163 (252)
T ss_dssp             HTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            224567777777777788888888888877742111   112345788888888888888888888888888754322  


Q ss_pred             -hhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814          304 -EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       304 -~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                       .......+|.+..++.++++.+|..++.+|..+...-..   ......+++.|.+++.++++++|..|..++..+...-
T Consensus       164 ~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          164 KAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCC
Confidence             123355788888888888888888888888888753221   1234567888888888888888999888888887654


Q ss_pred             c
Q 016814          380 M  380 (382)
Q Consensus       380 ~  380 (382)
                      +
T Consensus       244 ~  244 (252)
T 4hxt_A          244 W  244 (252)
T ss_dssp             B
T ss_pred             C
Confidence            3

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=99.67  E-value=5.9e-15  Score=122.39  Aligned_cols=186  Identities=11%  Similarity=0.179  Sum_probs=152.8

Q ss_pred             hhccCCchHHHHHHHHHHHH-HHhccCh----hhhhhhhhhhhhhhc-cCCCHHHHHHHHHHHHHHHHHhC-Ccc---cc
Q 016814            4 WQQSNDQDSVRLLAVEGCAA-LGKLLEP----QDCVAHILPVIVNFS-QDKSWRVRYMVANQLYELCEAVG-PEP---TR   73 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~-l~~~~~~----~~~~~~ll~~l~~~~-~d~~~~vR~~a~~~l~~l~~~~~-~~~---~~   73 (382)
                      ..++++++..|+.|++.+.. +....+.    ..-...++..+.+.+ +|++..||..++++++.+++.++ +..   +.
T Consensus        23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~  102 (249)
T 2qk1_A           23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV  102 (249)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH
T ss_pred             HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH
Confidence            45678899999999999999 8754321    111245777888888 79999999999999999999998 543   33


Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-H--HHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-L--AIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D  148 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-~--~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~  148 (382)
                      ..++|.+++.+.|....||.++..++..+++.+++. .  ..+.+++.+...+++++|.+|..++.+++.++...+.  .
T Consensus       103 ~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~  182 (249)
T 2qk1_A          103 SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYS  182 (249)
T ss_dssp             HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcch
Confidence            458999999999999999999999999999988432 0  1346788888899999999999999999999877663  2


Q ss_pred             ---hHH-HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH
Q 016814          149 ---ATI-EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL  189 (382)
Q Consensus       149 ---~~~-~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~  189 (382)
                         ... +.++|.+.+++.|+++.||..+..+++.+...+|.+.+
T Consensus       183 ~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~  227 (249)
T 2qk1_A          183 TLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTF  227 (249)
T ss_dssp             HHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGG
T ss_pred             hHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHHHH
Confidence               245 78999999999999999999999999999999997544

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.66  E-value=1.2e-14  Score=121.72  Aligned_cols=227  Identities=12%  Similarity=0.078  Sum_probs=155.4

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---Hh
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DA  149 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~  149 (382)
                      .+|.+++++.++++.+|..|+.+|..++...+.   .......+|.+.++++++++.+|..++.+++.++..-..   ..
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~   82 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAI   82 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            367777777777788888888888777654321   122345778888888888888888888888888753221   11


Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch-
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV-  225 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~-  225 (382)
                      .....+|.+..+++++++.+|..++.+++.++..-..   .......+|.+.+++.++++.+|..++..+..++..... 
T Consensus        83 ~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~  162 (252)
T 4hxt_A           83 VDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA  162 (252)
T ss_dssp             HHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            2245678888888888888888888888887742111   111235678888888888888888888888887653221 


Q ss_pred             --hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccc
Q 016814          226 --GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       226 --~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~  300 (382)
                        .......+|.+..++.++++.+|..++.+++.++.....   .......++.+.+.+.++++.+|..|+.++..+...
T Consensus       163 ~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          163 IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcC
Confidence              122234778888888888888888888888888752111   112345678888888888888888888888888754


Q ss_pred             cC
Q 016814          301 MG  302 (382)
Q Consensus       301 ~~  302 (382)
                      .+
T Consensus       243 ~~  244 (252)
T 4hxt_A          243 GW  244 (252)
T ss_dssp             CB
T ss_pred             CC
Confidence            43

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.65  E-value=5.4e-14  Score=127.89  Aligned_cols=335  Identities=14%  Similarity=0.092  Sum_probs=233.5

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDL   76 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l   76 (382)
                      -.+++.+++.++..|+..+..++..-.+   .-.....+|.+.+++.++++.++..++.+|.+++..-++   .......
T Consensus         8 v~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i~~~G~   87 (457)
T 1xm9_A            8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG   87 (457)
T ss_dssp             HHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred             HHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCC
Confidence            3566778899999999999999864433   223445788899999999999999999999999852111   1122457


Q ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhc--------CCC--------chHHHHHHHHHH
Q 016814           77 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELS--------SDS--------SQHVRSALASVI  138 (382)
Q Consensus        77 l~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~--------~d~--------~~~vr~~a~~~l  138 (382)
                      +|.+++++. +.++.+++.++.+|.+++..-. +..+.+..+|.+..++        .++        ++.+...++.+|
T Consensus        88 i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL  167 (457)
T 1xm9_A           88 IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL  167 (457)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHhccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHH
Confidence            999999998 7789999999999999987522 2223348889999988        332        355666999999


Q ss_pred             HhhccccCh--HhHH--HhhHHHHHHhhcC------CChHHHHHHHHhhHHhhhhh------------------------
Q 016814          139 MGMAPLLGK--DATI--EQLLPIFLSLLKD------EFPDVRLNIISKLDQVNQVI------------------------  184 (382)
Q Consensus       139 ~~l~~~~~~--~~~~--~~l~~~l~~~l~d------~~~~vr~~~~~~l~~~~~~~------------------------  184 (382)
                      ..++.. +.  +...  +..+|.+..++.+      .+..++..++..+..+....                        
T Consensus       168 ~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~  246 (457)
T 1xm9_A          168 RNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSS  246 (457)
T ss_dssp             HHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---------
T ss_pred             HHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccc
Confidence            999875 21  1112  2577777777653      34445555554444332100                        


Q ss_pred             ----------------------------chh-hHhhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhhch---h----h
Q 016814          185 ----------------------------GID-LLSQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLGV---G----F  227 (382)
Q Consensus       185 ----------------------------~~~-~~~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~---~----~  227 (382)
                                                  +.+ .+....+|.+..++.+ +++.++..++..+..++..-++   .    .
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~  326 (457)
T 1xm9_A          247 TGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI  326 (457)
T ss_dssp             -------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHH
T ss_pred             cchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHH
Confidence                                        001 1113456777777654 4678999999999998753322   1    1


Q ss_pred             h-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCcc------hHHHHHHHHHHHHhcc
Q 016814          228 F-DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINNPH------YLYRMTILRAISLLAP  299 (382)
Q Consensus       228 ~-~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~~------~~~r~~a~~~l~~l~~  299 (382)
                      + ....+|.+.+++.+++.+++..|+.++..++..-.. ..+....+|.+.+.+.+++      ..+...++.++..+..
T Consensus       327 v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~  406 (457)
T 1xm9_A          327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA  406 (457)
T ss_dssp             HTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHT
T ss_pred             HHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHh
Confidence            1 134679999999999999999999999999863222 2244568899999998763      3577788888888765


Q ss_pred             ccChh---hhhhhhHHHHHhhccCC-CccHHHHHHHHHHHHhh
Q 016814          300 VMGSE---ITCSRLLPVVINASKDR-VPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       300 ~~~~~---~~~~~~l~~l~~~l~d~-~~~vR~~a~~~l~~i~~  338 (382)
                      .-...   ......+|.+..++.++ +..++..|...|..+..
T Consensus       407 ~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~  449 (457)
T 1xm9_A          407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWS  449 (457)
T ss_dssp             TCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSS
T ss_pred             cCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHc
Confidence            43322   12346789999999998 89999999999987764

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.64  E-value=6.9e-17  Score=131.92  Aligned_cols=187  Identities=20%  Similarity=0.232  Sum_probs=114.1

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      +..+++|+++.||..++..+       +        ...+..+.+|+++.||..++..+       +.        +.+.
T Consensus        55 ~~~ll~d~~~~VR~~AA~~l-------~--------~~~l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~  104 (244)
T 1lrv_A           55 AVQYLADPFWERRAIAVRYS-------P--------VEALTPLIRDSDEVVRRAVAYRL-------PR--------EQLS  104 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------C--------GGGGGGGTTCSSHHHHHHHHTTS-------CS--------GGGG
T ss_pred             HHHHhcCCCHHHHHHHHHhC-------C--------HHHHHHHccCcCHHHHHHHHHHC-------CH--------HHHH
Confidence            45667777777777777632       1        12355667777777777777642       11        3455


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      .+++|+++.||.+++..+       +        .+.+..+++|+++.||..++..+       +.        +.+..+
T Consensus       105 ~ll~D~d~~VR~~aA~~l-------~--------~~~L~~L~~D~d~~VR~~aA~~l-------~~--------~~l~~l  154 (244)
T 1lrv_A          105 ALMFDEDREVRITVADRL-------P--------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF  154 (244)
T ss_dssp             GTTTCSCHHHHHHHHHHS-------C--------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred             HHHcCCCHHHHHHHHHhC-------C--------HHHHHHHHcCCCHHHHHHHHHhc-------CH--------HHHHHH
Confidence            667777777777776642       1        13455667777777777777631       11        133466


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  241 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  241 (382)
                      ++|+++.||..++..+       +.        +.+..+++|++|.||..++..+       +.        +.+..++.
T Consensus       155 ~~D~d~~VR~~aa~~l-------~~--------~ll~~ll~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~  204 (244)
T 1lrv_A          155 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH  204 (244)
T ss_dssp             TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred             HcCCCHHHHHHHHHcC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHHHHHc
Confidence            7777777777776652       11        1233456777777777777653       11        23455577


Q ss_pred             cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHH
Q 016814          242 DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAI  294 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l  294 (382)
                      |++|.||..++..++               .+.+..+ +|++|.||..+...+
T Consensus       205 D~d~~VR~~aa~~l~---------------~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          205 DPDWTVRLAAVEHAS---------------LEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             CSSHHHHHHHHHHSC---------------HHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHHcCC---------------HHHHHHc-cCCCHHHHHHHHHHh
Confidence            777777777777653               1333344 777777777776544

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.64  E-value=1.7e-14  Score=120.83  Aligned_cols=225  Identities=14%  Similarity=0.106  Sum_probs=166.0

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---H
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---D  148 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~  148 (382)
                      .-.+.+.+.++++++.+|..|+.+|..+...-..   .......+|.+.++++++++.+|..++.+++.++...+.   .
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4588888888999999999999999776554211   123346789999999999999999999999999863221   1


Q ss_pred             hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch
Q 016814          149 ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV  225 (382)
Q Consensus       149 ~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~  225 (382)
                      ......+|.+.++++++++.+|..++.+++.++..-...   ......+|.+.+++.++++.+|..++..+..++..-..
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~  171 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE  171 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChH
Confidence            122457899999999999999999999999887543221   12245789999999999999999999999988753221


Q ss_pred             ---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc
Q 016814          226 ---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       226 ---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~  299 (382)
                         .......+|.+..++.++++.+|..|+.+++.++.....   .......++.+.+++.+++..+|..|+.++..++.
T Consensus       172 ~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          172 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence               112245678888888888899999999999888742111   11233577778888888888888888888877653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.64  E-value=6.8e-13  Score=121.84  Aligned_cols=336  Identities=15%  Similarity=0.103  Sum_probs=236.7

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccch
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDL   76 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~l   76 (382)
                      .++..+++.++..|+..+..++.....   .-.....+|.+.+++.+++..++..++.+|.+|+..-..    .......
T Consensus        55 ~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~Ga  134 (584)
T 3l6x_A           55 AMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDG  134 (584)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTH
T ss_pred             HHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCC
Confidence            456778899999999999999864322   122334678999999999999999999999999842111    1222357


Q ss_pred             HHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhC-HHHHHHhhhHhhhhhc------------------CCCchHHHHHHHH
Q 016814           77 VPAYVRLLRD-NEAEVRIAAAGKVTKFCRILN-PELAIQHILPCVKELS------------------SDSSQHVRSALAS  136 (382)
Q Consensus        77 l~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il~~l~~~~------------------~d~~~~vr~~a~~  136 (382)
                      +|.+++++.+ .+..+++.++.+|.+++..-. +..+....+|.|.+++                  ...+..|+..++.
T Consensus       135 Ip~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~  214 (584)
T 3l6x_A          135 VPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAG  214 (584)
T ss_dssp             HHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHHHTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhccHHHHHHHHhcccccccccccccccccccccHHHHHHHHH
Confidence            9999999986 578899999999999876322 2233345678887765                  1235689999999


Q ss_pred             HHHhhccccC--hHhHH--HhhHHHHHHhhc------CCChHHHHHHHHhhHHhhhhhc---------------------
Q 016814          137 VIMGMAPLLG--KDATI--EQLLPIFLSLLK------DEFPDVRLNIISKLDQVNQVIG---------------------  185 (382)
Q Consensus       137 ~l~~l~~~~~--~~~~~--~~l~~~l~~~l~------d~~~~vr~~~~~~l~~~~~~~~---------------------  185 (382)
                      +|..++..-.  +....  ..+++.+..+++      +.+....+.++.+|..++....                     
T Consensus       215 ~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~  294 (584)
T 3l6x_A          215 CLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTG  294 (584)
T ss_dssp             HHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC-------------
T ss_pred             HHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhccccccccc
Confidence            9999986432  12111  234445555443      3456677777777766543321                     


Q ss_pred             ------hhh-HhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHHhhhch--h----h-hHHHHHHHHHHHhccchhHHHHH
Q 016814          186 ------IDL-LSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLASQLGV--G----F-FDDKLGALCMQWLQDKVYSIRDA  250 (382)
Q Consensus       186 ------~~~-~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~~~~~~--~----~-~~~~l~~~l~~~l~d~~~~vr~~  250 (382)
                            .+. +....++.+..++. ..++.++..++.+|..++..-++  .    . .....+|.+..+|.+++.+++..
T Consensus       295 ~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~  374 (584)
T 3l6x_A          295 TSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKA  374 (584)
T ss_dssp             -CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHH
T ss_pred             ccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence                  111 11245677777774 46789999999999999743211  1    1 12456999999999999999999


Q ss_pred             HHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcCc--------chHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhc
Q 016814          251 AANNLKRLAEEFGP-EWAMQHITPQVLEMINNP--------HYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINAS  318 (382)
Q Consensus       251 a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~~--------~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l  318 (382)
                      |+.+|..++..-.. +.+....+|.+..+|.++        +..++..++.+++.++..-...   ......+|.|..++
T Consensus       375 A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL  454 (584)
T 3l6x_A          375 ASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLIN  454 (584)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHH
Confidence            99999999875433 335667899999999876        3577888999998876432211   23456899999999


Q ss_pred             cCC--CccHHHHHHHHHHHHhhh
Q 016814          319 KDR--VPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       319 ~d~--~~~vR~~a~~~l~~i~~~  339 (382)
                      .+.  .+.++..|+.+|..+..+
T Consensus       455 ~s~~~~~~v~k~Aa~vL~nl~~~  477 (584)
T 3l6x_A          455 KSGNRSEKEVRAAALVLQTIWGY  477 (584)
T ss_dssp             TCSSSCHHHHHHHHHHHHHHHTS
T ss_pred             hCCCCChHHHHHHHHHHHHHHcC
Confidence            886  778999999999988753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.64  E-value=1.7e-14  Score=120.77  Aligned_cols=225  Identities=16%  Similarity=0.143  Sum_probs=172.7

Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc---
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG---  224 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~---  224 (382)
                      ..-++.+.+.++++++++|..++..+..+... ..+    ......+|.+.++++++++.+|..++..+..++....   
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            34567778888888889999999888765543 211    1224578899999999999999999999998875221   


Q ss_pred             hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcccc
Q 016814          225 VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       225 ~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      ........+|.+..++.++++.+|..|+.+++.++......   ......+|.+.+++.++++.+|..++.+++.++...
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            12222347889999999999999999999999997543221   234468999999999999999999999999998643


Q ss_pred             Chh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          302 GSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       302 ~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      ...   .....++|.++..+.++++.+|..++.+|+.+...-..   ......+++.|..++.+.++++|..|+.++..+
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l  249 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKL  249 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTT
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            321   23357899999999999999999999999999853222   223456889999999999999999999999876


Q ss_pred             HH
Q 016814          376 DH  377 (382)
Q Consensus       376 ~~  377 (382)
                      +.
T Consensus       250 ~~  251 (252)
T 4db8_A          250 QS  251 (252)
T ss_dssp             C-
T ss_pred             hc
Confidence            53

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.60  E-value=3.9e-13  Score=120.63  Aligned_cols=338  Identities=12%  Similarity=0.046  Sum_probs=219.7

Q ss_pred             hhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCc------------HHHHHHHHHHHHHHH
Q 016814           38 LPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNE------------AEVRIAAAGKVTKFC  103 (382)
Q Consensus        38 l~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~------------~~VR~~a~~~l~~l~  103 (382)
                      ++-+.+.+.+.+..   ...+.|..+....+.  .......+|.|++++++++            +.+|..|+++|.+++
T Consensus        34 ~~~l~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~  110 (458)
T 3nmz_A           34 VYSLLSMLGTHDKD---DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNII  110 (458)
T ss_dssp             -----------CCH---HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCHH---HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHH
Confidence            34444444444333   255555555543321  1123568999999998642            699999999999998


Q ss_pred             HhhCHH---HHHHhhh----------HhhhhhcCCCc-------hHHHH-------HHHHHHHhhccccCh-H-hHHHhh
Q 016814          104 RILNPE---LAIQHIL----------PCVKELSSDSS-------QHVRS-------ALASVIMGMAPLLGK-D-ATIEQL  154 (382)
Q Consensus       104 ~~~~~~---~~~~~il----------~~l~~~~~d~~-------~~vr~-------~a~~~l~~l~~~~~~-~-~~~~~l  154 (382)
                      ..-+..   .....++          +.+.+++..+.       ..|+.       .++++|+.++..-.. + ......
T Consensus       111 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~  190 (458)
T 3nmz_A          111 HSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGG  190 (458)
T ss_dssp             HHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTH
T ss_pred             ccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCC
Confidence            754322   1111222          33333333221       12655       888888888643111 1 122456


Q ss_pred             HHHHHHhhc----------C-CChHHHHHHHHhhHHhhhhhc--hhhH--hhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814          155 LPIFLSLLK----------D-EFPDVRLNIISKLDQVNQVIG--IDLL--SQSLLPAIVELAEDRHWRVRLAIIEYIPLL  219 (382)
Q Consensus       155 ~~~l~~~l~----------d-~~~~vr~~~~~~l~~~~~~~~--~~~~--~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  219 (382)
                      ++.+..++.          + .++.++..++.+|..++..-.  +..+  ....+|.|..++.+++..++..++..|..+
T Consensus       191 l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nL  270 (458)
T 3nmz_A          191 LQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNL  270 (458)
T ss_dssp             HHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            677777763          1 347789999999999875422  1122  245699999999999999999999999998


Q ss_pred             Hhhhch---h-hhHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHhCh--HHH--HhhhHHHHHhhhcCcch----HH
Q 016814          220 ASQLGV---G-FFDDKLGALCMQW-LQDKVYSIRDAAANNLKRLAEEFGP--EWA--MQHITPQVLEMINNPHY----LY  286 (382)
Q Consensus       220 ~~~~~~---~-~~~~~l~~~l~~~-l~d~~~~vr~~a~~~l~~~~~~~~~--~~~--~~~l~~~l~~~l~~~~~----~~  286 (382)
                      +..-+.   . ......+|.+..+ +.+.+..+++.|+.++..++.....  ..+  ....+|.+.+++.+++.    .+
T Consensus       271 s~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v  350 (458)
T 3nmz_A          271 SWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAI  350 (458)
T ss_dssp             TSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHH
T ss_pred             hcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHH
Confidence            753111   1 1223467888886 4567889999999999999873211  122  34688999999886543    58


Q ss_pred             HHHHHHHHHHhccc--cChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh-hH--HHHHHhHHHHHHHhc
Q 016814          287 RMTILRAISLLAPV--MGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV-DQ--SMVEKTIRPCLVELT  357 (382)
Q Consensus       287 r~~a~~~l~~l~~~--~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~-~~--~~~~~~i~~~l~~l~  357 (382)
                      +..++.++..++..  .+.+    ......+|.++.++.+.+..++..|+.+|..+...- ..  .......+|.|..++
T Consensus       351 ~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL  430 (458)
T 3nmz_A          351 IESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLI  430 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTT
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence            89999999988752  1222    123457899999999999999999999999997421 11  134467889999999


Q ss_pred             CCCCccHHhHHHHHHHHHHHH
Q 016814          358 EDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       358 ~d~~~~vr~~a~~al~~~~~~  378 (382)
                      ...+.++|..|+.||..+...
T Consensus       431 ~s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          431 HSKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTC
T ss_pred             hCCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999998753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.58  E-value=1.3e-12  Score=124.32  Aligned_cols=330  Identities=14%  Similarity=0.066  Sum_probs=221.1

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc---CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCC
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ---DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDN   87 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~---d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~   87 (382)
                      +..+..|.-++|.+-.....     ..+..+.+++.   ..++.+|..++.++|.+....+.     ..+..+.+.+.++
T Consensus       372 ~~~k~sA~aSLGlIh~g~~~-----~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~-----~~~~lL~~~L~~~  441 (963)
T 4ady_A          372 NWAKFTATASLGVIHKGNLL-----EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR-----DTTDYLKNIIVEN  441 (963)
T ss_dssp             THHHHHHHHHHHHHTSSCTT-----THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH-----HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHhhhhccCchH-----HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH-----HHHHHHHHHHcCc
Confidence            44566777777776553322     23444555554   56789999999999988755443     2456666655544


Q ss_pred             c--------HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814           88 E--------AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  159 (382)
Q Consensus        88 ~--------~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  159 (382)
                      +        +.+|..|+.+||-+.-.-+.+    .+++.+...+.|.+..+|..++.++|.+.-.-++....+.++..  
T Consensus       442 ~~~~~~~~~~~ir~gAaLGLGla~~GS~~e----ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~--  515 (963)
T 4ady_A          442 SGTSGDEDVDVLLHGASLGIGLAAMGSANI----EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTY--  515 (963)
T ss_dssp             SSCCSCHHHHHHHHHHHHHHHHHSTTCCCH----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHH--
T ss_pred             cccccccccHHHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHH--
Confidence            3        779999999998864433334    34566666666667788889999999774434444334444444  


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814          160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  239 (382)
Q Consensus       160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  239 (382)
                       +.++.+..+|+.++.+|+.+.  +|.+...+.++..   +..+.+|.+|..++..++--...-|....   +-.++..+
T Consensus       516 -~~e~~~e~vrR~aalgLGll~--~g~~e~~~~li~~---L~~~~dp~vRygaa~alglAyaGTGn~~a---Iq~LL~~~  586 (963)
T 4ady_A          516 -SQETQHGNITRGLAVGLALIN--YGRQELADDLITK---MLASDESLLRYGGAFTIALAYAGTGNNSA---VKRLLHVA  586 (963)
T ss_dssp             -HHHCSCHHHHHHHHHHHHHHT--TTCGGGGHHHHHH---HHHCSCHHHHHHHHHHHHHHTTTSCCHHH---HHHHHHHH
T ss_pred             -HhccCcHHHHHHHHHHHHhhh--CCChHHHHHHHHH---HHhCCCHHHHHHHHHHHHHHhcCCCCHHH---HHHHHHHh
Confidence             345678899999999998773  3443222333333   34578999999998888755444444322   22234444


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh-cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI-NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l-~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      ..|.+..||..|+.+++.+.  +|.+    ...|.+++.+ .+.++.+|..++.+++.++..-+.    ..++..|..+.
T Consensus       587 ~~d~~d~VRraAViaLGlI~--~g~~----e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~  656 (963)
T 4ady_A          587 VSDSNDDVRRAAVIALGFVL--LRDY----TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLT  656 (963)
T ss_dssp             HHCSCHHHHHHHHHHHHHHT--SSSC----SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHH
T ss_pred             ccCCcHHHHHHHHHHHHhhc--cCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHc
Confidence            56888999999999999876  3332    2455666544 467899999999999998754443    45667778889


Q ss_pred             cCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC--CCccHHhHHHHHHHHH
Q 016814          319 KDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED--PDVDVRFFATQAIQSI  375 (382)
Q Consensus       319 ~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d--~~~~vr~~a~~al~~~  375 (382)
                      +|++..||..|+.+|+.+...-.+.  .-...++..|.+...|  .+...|..|.-|.+.+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll  717 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIM  717 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence            9999999999999999998644332  1234566666666655  4566888888877754

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.58  E-value=2.9e-12  Score=127.83  Aligned_cols=359  Identities=8%  Similarity=0.054  Sum_probs=228.9

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-----CCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhc
Q 016814           12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLL   84 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l   84 (382)
                      ..|+.+.+.+..++...+ +...+.+++.+.+.+..     .+|..|++++.+++.+++.+....  ....+++.+.++.
T Consensus       436 ~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~~~~l~~l~~~l~~l~  514 (971)
T 2x1g_F          436 CYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVAEHFGGEEKRQIPRLMRVLAEIP  514 (971)
T ss_dssp             HHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTTTC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHhcC
Confidence            578889999998888776 55666777777766543     799999999999999998776533  1223555443443


Q ss_pred             -CCCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHH
Q 016814           85 -RDNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLS  160 (382)
Q Consensus        85 -~d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~  160 (382)
                       .|+++.||..++++++.+++.+... .+...++|.+...+ |  +.|+..++.++..+++..+...  ..+.++..+.+
T Consensus       515 ~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~~~l~p~~~~ll~~l~~  591 (971)
T 2x1g_F          515 YEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKELCRDCQLQLKPYADPLLNACHA  591 (971)
T ss_dssp             TTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence             2568999999999999999987643 44556778777777 4  7899999999999997665432  23556666666


Q ss_pred             hhcC--CChHHHHHHHHhhHHhhhhhchhhHh---hhHHHHH----HHHhcCC--CchHHHHHHHHhHHHH---hhhchh
Q 016814          161 LLKD--EFPDVRLNIISKLDQVNQVIGIDLLS---QSLLPAI----VELAEDR--HWRVRLAIIEYIPLLA---SQLGVG  226 (382)
Q Consensus       161 ~l~d--~~~~vr~~~~~~l~~~~~~~~~~~~~---~~llp~l----~~~~~d~--~~~vr~~~~~~l~~l~---~~~~~~  226 (382)
                      ++..  -+...+..+.++++.++...+.+...   +.+++.+    .+.++..  +..-+......++.++   ..++..
T Consensus       592 ~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~  671 (971)
T 2x1g_F          592 SLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKYLDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTD  671 (971)
T ss_dssp             HHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             HHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            6665  35789999999999998776533221   2333333    3333333  3334455555554444   333321


Q ss_pred             ---------------hhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcCcchHHH
Q 016814          227 ---------------FFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINNPHYLYR  287 (382)
Q Consensus       227 ---------------~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~~~~~~r  287 (382)
                                     .+.+.++|.+...+.+  .+..+.+.++..++.++..+|.+.  +...+++.+...+.....   
T Consensus       672 ~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~~~~p~l~~~~~~l~~~~~~~~~---  748 (971)
T 2x1g_F          672 VDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRSSFQPMLQDLCLFIVASFQTRCC---  748 (971)
T ss_dssp             ------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC--CTHHHHHHHHHHHHCC--CC---
T ss_pred             cCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhhhccccHHHHHHHHHHHHhcCCc---
Confidence                           1234577777777654  366899999999999998887643  455666666666665332   


Q ss_pred             HHHHHHHHHhccccChh--------hhhhhhHHHHHhhccC-------CCccHHHHHHHHHHHHhhhhhHHHH-----HH
Q 016814          288 MTILRAISLLAPVMGSE--------ITCSRLLPVVINASKD-------RVPNIKFNVAKVLQSLIPIVDQSMV-----EK  347 (382)
Q Consensus       288 ~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~~~l~d-------~~~~vR~~a~~~l~~i~~~~~~~~~-----~~  347 (382)
                      ..+++.++.++..+|.+        .+...+...++..+..       ..++++......+..+........+     ..
T Consensus       749 ~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~~~~s~~~l~  828 (971)
T 2x1g_F          749 APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQVLEDKTLAYD  828 (971)
T ss_dssp             HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGGGGCTTSCHH
T ss_pred             hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHHHcCCcccHH
Confidence            34788888888877763        1222233333443333       2678999999999888865443222     34


Q ss_pred             hHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          348 TIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       348 ~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      .+++.....+.-++......+...+..+..
T Consensus       829 ~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~  858 (971)
T 2x1g_F          829 RLVFYAQRGMTLPESGAIRNSIQFLTHFVM  858 (971)
T ss_dssp             HHHHHHHHHHTSSCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            555555555555566666667666665443

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.54  E-value=1.8e-12  Score=124.98  Aligned_cols=284  Identities=14%  Similarity=0.176  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----HhHHHhhHHHHHHhhcCCC
Q 016814           92 RIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDEF  166 (382)
Q Consensus        92 R~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~~  166 (382)
                      +..+...+..+...- +.......++..+.+.+.|+...  +.++.++..+++..+.    +.+.-.++|.+.....|..
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk~  108 (986)
T 2iw3_A           31 RHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNKD  108 (986)
T ss_dssp             HHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCCc
Confidence            344555555554321 11000125677888888887666  8999999999977753    2233346788888999999


Q ss_pred             hHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCC-CchHHHHHHHHhHHHHhhhchh--hhHHHHHHHHHHHhccc
Q 016814          167 PDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDR-HWRVRLAIIEYIPLLASQLGVG--FFDDKLGALCMQWLQDK  243 (382)
Q Consensus       167 ~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~-~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~  243 (382)
                      ..||.++..+...+...++++.. ..++|.+...+.+. .|..+..++..+..+++..+..  ...+.++|.+...+.|.
T Consensus       109 ~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~  187 (986)
T 2iw3_A          109 KEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDT  187 (986)
T ss_dssp             HHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCS
T ss_pred             hHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccC
Confidence            99999999999999999999888 88999999888655 6999999999999999866322  23478999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC-hhhhhhhhHHHHHhhccCCC
Q 016814          244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG-SEITCSRLLPVVINASKDRV  322 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~-~~~~~~~~l~~l~~~l~d~~  322 (382)
                      .++|..+|..++..++..+++... +.++|.+++.+.+|+. +- .++..++...-.-. ..+....+.|.|.+.|+++.
T Consensus       188 k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-~~-~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~l~~~~  264 (986)
T 2iw3_A          188 KKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-VP-ETVHLLGATTFVAEVTPATLSIMVPLLSRGLNERE  264 (986)
T ss_dssp             SHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-HH-HHHHHHTTCCCCSCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             cHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-hH-HHHHHhhcCeeEeeecchhHHHHHHHHHhhhccCc
Confidence            999999999999999998887654 3489999999999864 22 22344433221111 12467789999999999999


Q ss_pred             ccHHHHHHHHHHHHhhhhhHH----HHHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHHhcc
Q 016814          323 PNIKFNVAKVLQSLIPIVDQS----MVEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       323 ~~vR~~a~~~l~~i~~~~~~~----~~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ..++..++-.+..+.+-+..+    .|...++|.+.+..+ -.+|++|..|.+|+..+..+.+.
T Consensus       265 ~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~~  328 (986)
T 2iw3_A          265 TGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGNV  328 (986)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHTC
T ss_pred             chhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999998876543    577899999999654 48999999999999999887653

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.54  E-value=1e-11  Score=111.44  Aligned_cols=323  Identities=12%  Similarity=0.065  Sum_probs=220.6

Q ss_pred             HHHHHHHHHhccCh--hhhhhhhhhhhhhhccCC------------CHHHHHHHHHHHHHHHHHhCCcccc---cchH--
Q 016814           17 AVEGCAALGKLLEP--QDCVAHILPVIVNFSQDK------------SWRVRYMVANQLYELCEAVGPEPTR---MDLV--   77 (382)
Q Consensus        17 a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~------------~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll--   77 (382)
                      ..+.+..+....+.  .-.....+|.+.++++..            ++.+|..++.+|.+|+..-++....   ..++  
T Consensus        49 ~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~  128 (458)
T 3nmz_A           49 MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHL  128 (458)
T ss_dssp             HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHH
Confidence            44455555554432  124555888888888753            3699999999999999876553221   1133  


Q ss_pred             --------HHHHHhcCCCc-------HHHHH-------HHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcC---------
Q 016814           78 --------PAYVRLLRDNE-------AEVRI-------AAAGKVTKFCRIL--NPELAIQHILPCVKELSS---------  124 (382)
Q Consensus        78 --------~~l~~~l~d~~-------~~VR~-------~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~---------  124 (382)
                              +.+.+++..++       ..||.       .|+.+|++++..-  .........++.+..++.         
T Consensus       129 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~  208 (458)
T 3nmz_A          129 LEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT  208 (458)
T ss_dssp             HHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHHHHHHHHSTTC
T ss_pred             HHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhhhhcccccc
Confidence                    44444444331       11655       7888888884321  111233457777777763         


Q ss_pred             --CCchHHHHHHHHHHHhhccccCh--HhH--HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh-hhHH
Q 016814          125 --DSSQHVRSALASVIMGMAPLLGK--DAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS-QSLL  194 (382)
Q Consensus       125 --d~~~~vr~~a~~~l~~l~~~~~~--~~~--~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~-~~ll  194 (382)
                        +.++.++..++.+|..++..-+.  ...  ....+|.+.+++.+++++++..++.+|..+...-+   .+.+. ...+
T Consensus       209 ~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI  288 (458)
T 3nmz_A          209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSV  288 (458)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCH
Confidence              23567999999999999854321  122  24568999999999999999999999998865211   12221 3468


Q ss_pred             HHHHHH-hcCCCchHHHHHHHHhHHHHhhhc---hhhh-HHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHH--hC
Q 016814          195 PAIVEL-AEDRHWRVRLAIIEYIPLLASQLG---VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEE--FG  263 (382)
Q Consensus       195 p~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~---~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~--~~  263 (382)
                      |.+.++ ..+.+..++..++..+..++....   .... ....+|.+..++.+.+.    ++++.|+.+|..++..  .+
T Consensus       289 ~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~  368 (458)
T 3nmz_A          289 KALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN  368 (458)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC
Confidence            888886 455678899999999998886321   2222 24578889999886543    5999999999988863  12


Q ss_pred             hHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814          264 PEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       264 ~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  336 (382)
                      .+.    .....+|.+..++.+++..++..|+.++..++......   ....-.+|.|..++.++++.+|..|+.+|..+
T Consensus       369 ~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL  448 (458)
T 3nmz_A          369 EDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNL  448 (458)
T ss_dssp             HHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence            221    23457899999999999999999999999997421111   23356789999999999999999999999999


Q ss_pred             hhh
Q 016814          337 IPI  339 (382)
Q Consensus       337 ~~~  339 (382)
                      ...
T Consensus       449 ~~~  451 (458)
T 3nmz_A          449 MAN  451 (458)
T ss_dssp             HTC
T ss_pred             HcC
Confidence            764

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.52  E-value=1.6e-11  Score=120.93  Aligned_cols=370  Identities=10%  Similarity=0.060  Sum_probs=240.0

Q ss_pred             CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCH-HHHHHHHHHHHHHHHHhCCccc-------------c
Q 016814            8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSW-RVRYMVANQLYELCEAVGPEPT-------------R   73 (382)
Q Consensus         8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~-~vR~~a~~~l~~l~~~~~~~~~-------------~   73 (382)
                      ++.+.+|.....++..++...-+ ..|+.+++-+.+++..++. ..-...++.+..+.+.+.....             +
T Consensus       101 ~~~~~IrnKL~~~la~l~~~~~p-~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lk  179 (980)
T 3ibv_A          101 DEPAYISNAVQHLLTLLFLQLYP-SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVK  179 (980)
T ss_dssp             TSCTHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHhCc-ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHH
Confidence            35678999999999999987544 3577777777777654333 3455667777766666543210             0


Q ss_pred             --------cchHHHHHHhc----CCCcHHHHHHHHHHHHHHHHhhCHHHH-HHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814           74 --------MDLVPAYVRLL----RDNEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVKELSSDSSQHVRSALASVIMG  140 (382)
Q Consensus        74 --------~~ll~~l~~~l----~d~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~~l~~~~~d~~~~vr~~a~~~l~~  140 (382)
                              ..+.+...+.+    ...++.++..++++++.+...++...+ .+.+++.+..++.+  +.+|..++.++..
T Consensus       180 d~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~e  257 (980)
T 3ibv_A          180 DAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTE  257 (980)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHH
Confidence                    11233333333    336788999999999999998877643 35688888888876  7899999999999


Q ss_pred             hccccChHhHHHhhH------HHHHHhhc-CCChHHHHHHHHhhHHhhhhh-----ch-----h------hHhhhHHHHH
Q 016814          141 MAPLLGKDATIEQLL------PIFLSLLK-DEFPDVRLNIISKLDQVNQVI-----GI-----D------LLSQSLLPAI  197 (382)
Q Consensus       141 l~~~~~~~~~~~~l~------~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~-----~~-----~------~~~~~llp~l  197 (382)
                      +...-.+......++      +.+..+.. +++.++.+..++.+..++..+     .+     +      .....++|.+
T Consensus       258 i~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~l  337 (980)
T 3ibv_A          258 IVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYL  337 (980)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHH
T ss_pred             HHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHH
Confidence            875433211111222      22222222 456777666665554433221     11     0      2225678889


Q ss_pred             HHHhcCCCchHHHHHHHHhHHHHhhhc---h-----h---hhHHHHHHHHHHHhc---c----c----h-----hHHHHH
Q 016814          198 VELAEDRHWRVRLAIIEYIPLLASQLG---V-----G---FFDDKLGALCMQWLQ---D----K----V-----YSIRDA  250 (382)
Q Consensus       198 ~~~~~d~~~~vr~~~~~~l~~l~~~~~---~-----~---~~~~~l~~~l~~~l~---d----~----~-----~~vr~~  250 (382)
                      ..+..++++.|-..++..+..+.....   .     .   .+...+++.+..-+.   |    .    +     .+.|+.
T Consensus       338 L~~~~~~~deVs~~t~~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~  417 (980)
T 3ibv_A          338 IRYLSDDYDETSTAVFPFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKK  417 (980)
T ss_dssp             HHHHTCSSHHHHHTTHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHH
T ss_pred             HHHhCCCchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHH
Confidence            999999988887777777776654321   1     1   122344444444332   1    1    0     146777


Q ss_pred             HHHHHHHHHHHhChHHHHh----hhHHHHHhhhc---CcchHHHHHHHHHHHHhccccChh--------hhhhhhHHHHH
Q 016814          251 AANNLKRLAEEFGPEWAMQ----HITPQVLEMIN---NPHYLYRMTILRAISLLAPVMGSE--------ITCSRLLPVVI  315 (382)
Q Consensus       251 a~~~l~~~~~~~~~~~~~~----~l~~~l~~~l~---~~~~~~r~~a~~~l~~l~~~~~~~--------~~~~~~l~~l~  315 (382)
                      .. .+-..+..+|++.+..    .+.+.+.+.+.   +.+|+.+++++.+++.+++.+...        ...+.+++.+.
T Consensus       418 l~-~l~d~~~~l~~~~~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~  496 (980)
T 3ibv_A          418 LK-IFQDTINSIDSSLFSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILA  496 (980)
T ss_dssp             HH-HHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHH
T ss_pred             HH-HHHHHHHhcChHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHH
Confidence            66 6667777788877666    55555656553   456999999999999999887531        23456777777


Q ss_pred             hhcc-----CCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHH--hcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          316 NASK-----DRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVE--LTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       316 ~~l~-----d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~--l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ..+.     ++++.||..++++++.....+... .+...+++.+..  -+.+++..||..|+.++..+.+..+.
T Consensus       497 ~ll~s~i~~~~hp~V~~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~  570 (980)
T 3ibv_A          497 LVTTSQVCRHPHPLVQLLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK  570 (980)
T ss_dssp             HHHHSSTTTCCCHHHHHHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT
T ss_pred             HHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH
Confidence            7755     888999999999999999887632 233444444444  45578899999999999999876543

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.52  E-value=4.5e-11  Score=119.27  Aligned_cols=362  Identities=10%  Similarity=0.060  Sum_probs=232.4

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-----CCHHHHHHHHHHHHHHHHHhCCc--------------
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-----KSWRVRYMVANQLYELCEAVGPE--------------   70 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-----~~~~vR~~a~~~l~~l~~~~~~~--------------   70 (382)
                      .+.||.....++..+++.--++. |+.+++.+.+.++.     +++..+..++..+..+++.....              
T Consensus       116 ~~~ir~kl~~~la~i~~~~~p~~-Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l  194 (963)
T 2x19_B          116 SKIVLTRLCVALASLALSMMPDA-WPCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSL  194 (963)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTTT-STTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCS
T ss_pred             CHHHHHHHHHHHHHHHHHhCccc-cchHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHH
Confidence            58899999999999999754433 88899988888765     36678899999999998644211              


Q ss_pred             -ccccchHHHHHHhcCCCc--HHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC
Q 016814           71 -PTRMDLVPAYVRLLRDNE--AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus        71 -~~~~~ll~~l~~~l~d~~--~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                       ...+.+++.+.+.+.+.+  ..++..+++++...+. .+.. .....+++.+...+.  ++.+|..+++++..+...-.
T Consensus       195 ~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~-~~~~~~~~~~ll~~l~~~l~--~~~~~~~a~~~l~~i~~~~~  271 (963)
T 2x19_B          195 AVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQ-LEVPLQDCEALIQAAFAALQ--DSELFDSSVEAIVNAISQPD  271 (963)
T ss_dssp             GGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHT-SSCCGGGTHHHHHHHHHHTT--STTTHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHc-CCCCcccchHHHHHHHHHhC--CchHHHHHHHHHHHHHcccc
Confidence             111236666666666543  2488888898877655 3221 111456677777764  57789999999999876432


Q ss_pred             hH---hHHHhhHHHHHH-------hhcCCChHHHHHHHHhhHHhhhhhc---------hhhHhhhHHHHHHHHhcC----
Q 016814          147 KD---ATIEQLLPIFLS-------LLKDEFPDVRLNIISKLDQVNQVIG---------IDLLSQSLLPAIVELAED----  203 (382)
Q Consensus       147 ~~---~~~~~l~~~l~~-------~l~d~~~~vr~~~~~~l~~~~~~~~---------~~~~~~~llp~l~~~~~d----  203 (382)
                      ..   .....+++.+..       .+.+.+.......++.+..++....         .+.+ ..+++.+..+..+    
T Consensus       272 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~-~~~l~~ll~~~~~~~~~  350 (963)
T 2x19_B          272 AQRYVNTLLKLIPLVLGLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWQSF-LALVNMIMFCTGIPGHY  350 (963)
T ss_dssp             GGGCHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH-HHHHHHHHHHHTCSSCT
T ss_pred             cccCHHHHHHHHHHHHhhHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHHHHcCccchHHH-HHHHHHHHHHHcCCCCC
Confidence            11   122233333322       2233445555556666655543321         1222 3556666666554    


Q ss_pred             -CCchHHHHHHHHhHHHHhhhc----------hh---hhHHHHHHHHHHHhccc--------------h-hHHHHHHHHH
Q 016814          204 -RHWRVRLAIIEYIPLLASQLG----------VG---FFDDKLGALCMQWLQDK--------------V-YSIRDAAANN  254 (382)
Q Consensus       204 -~~~~vr~~~~~~l~~l~~~~~----------~~---~~~~~l~~~l~~~l~d~--------------~-~~vr~~a~~~  254 (382)
                       .++.+...++.....+++...          ..   .+...+++.+...+..+              + .+.|..+...
T Consensus       351 ~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~  430 (963)
T 2x19_B          351 PVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDT  430 (963)
T ss_dssp             TTTCGGGGGGHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred             CchhhhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHH
Confidence             355666666666666555220          11   11234455544444211              1 1347778888


Q ss_pred             HHHHHHHhChHHHHhhhHHHHHhhh----cCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHH
Q 016814          255 LKRLAEEFGPEWAMQHITPQVLEMI----NNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFN  328 (382)
Q Consensus       255 l~~~~~~~~~~~~~~~l~~~l~~~l----~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~  328 (382)
                      +..++...|.+ ....+++.+.+.+    .+++|..|++++.+++.+++.+..+  .+...+++.+.. +.++++.+|..
T Consensus       431 L~~~~~~~~~~-~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~-l~~~~~~vr~~  508 (963)
T 2x19_B          431 LMYVYEMLGAE-LLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPR-ISISNVQLADT  508 (963)
T ss_dssp             HHHHHHHHTHH-HHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGG-SCCCSHHHHHH
T ss_pred             HHHHHHHccHH-HHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHh-CCCCcHHHHHH
Confidence            88888777643 3445666666666    6678999999999999999887643  345566664443 44467889999


Q ss_pred             HHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          329 VAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       329 a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ++.+++.+...+.. ..+...+++.+...+++  +.|+..|+.++..++...+
T Consensus       509 ~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~  559 (963)
T 2x19_B          509 VMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECK  559 (963)
T ss_dssp             HHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHH
Confidence            99999999987653 24567788888877765  8999999999999987543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=99.52  E-value=5.4e-12  Score=125.89  Aligned_cols=362  Identities=11%  Similarity=0.053  Sum_probs=226.9

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCC------CHHHHHHHHHHHHHHHHHhC-Cc------------
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDK------SWRVRYMVANQLYELCEAVG-PE------------   70 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~------~~~vR~~a~~~l~~l~~~~~-~~------------   70 (382)
                      .+.||.....++..+++...+  .|+.+++.+.+.++.+      ++..+..++..+..+++... .+            
T Consensus        98 ~~~vr~kl~~~la~i~~~~~p--~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l  175 (971)
T 2x1g_F           98 PKIVLNRLCISLGAYIVHMLG--EWPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEI  175 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTC--C------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccc--cccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHH
Confidence            588999999999999997655  6888888888887654      56788999999998886321 11            


Q ss_pred             -ccccchHHHHHHhcCCC--------cHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhc----------------
Q 016814           71 -PTRMDLVPAYVRLLRDN--------EAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELS----------------  123 (382)
Q Consensus        71 -~~~~~ll~~l~~~l~d~--------~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~----------------  123 (382)
                       ...+.+++.+.+.+.+.        .+.++..+++++..+..  ..+.. ....+++.+.. +                
T Consensus       176 ~~~~~~vl~ll~~~l~~~~~~~~~~~~~~~~~~al~~l~~~~~~~~ip~~-~~~~ll~~l~~-L~~~~~~~~~~~~~~~~  253 (971)
T 2x1g_F          176 AKRVQLVIHTVERYLKLQMNRVWDAEAYSNMNRAVKCVGTWIKNIGYTIE-GCVTITAVLLE-VVHKCYWPCIHAGDGCM  253 (971)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHSCCCGG-GHHHHHHHHHH-HHHHHHSSSCC---CCC
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCccchhHHHHHHHHHHHHHhhCCcCcc-ccccHHHHHHh-hhhhhcccccccccccc
Confidence             00123555555554321        13799999999999887  34444 44566776665 3                


Q ss_pred             CCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHh-------hcCCC---hHHHHHHHHhhHHhhhhhch----
Q 016814          124 SDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSL-------LKDEF---PDVRLNIISKLDQVNQVIGI----  186 (382)
Q Consensus       124 ~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~-------l~d~~---~~vr~~~~~~l~~~~~~~~~----  186 (382)
                      .+.++.+|..++.++..+...-..+   .....++|.+..+       +.+++   +......++.+..+++....    
T Consensus       254 ~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~~~~~~~~  333 (971)
T 2x1g_F          254 TADENELAESCLKTMVNIIIQPDCHNYPKTAFVLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVERHSTLLLS  333 (971)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHCSGGGGCHHHHHHHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CcCCcHHHHHHHHHHHHHHcCccccccHHHHHHHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1256789999999999988642211   1223344443331       23444   36666666666665532110    


Q ss_pred             ---------hhHhhhHHHHHHHHhcC-----CCchHHHHHHHHhHHHHhhh-c----------hh---hhHHHHHHHHHH
Q 016814          187 ---------DLLSQSLLPAIVELAED-----RHWRVRLAIIEYIPLLASQL-G----------VG---FFDDKLGALCMQ  238 (382)
Q Consensus       187 ---------~~~~~~llp~l~~~~~d-----~~~~vr~~~~~~l~~l~~~~-~----------~~---~~~~~l~~~l~~  238 (382)
                               ......+++.+..+...     .+..+...++..+..+++.. +          ..   .+...+++.+..
T Consensus       334 ~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l~~  413 (971)
T 2x1g_F          334 GITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLYAHLTRILVR  413 (971)
T ss_dssp             HHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHH
Confidence                     01113456666665533     46778888888887776522 1          01   112344454444


Q ss_pred             Hhc---cc-----h-------hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC-----cchHHHHHHHHHHHHhc
Q 016814          239 WLQ---DK-----V-------YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN-----PHYLYRMTILRAISLLA  298 (382)
Q Consensus       239 ~l~---d~-----~-------~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~l~  298 (382)
                      .+.   |.     +       ...|.++...+..++..+| +.....+++.+.+.+..     ++|..|++++.+++.++
T Consensus       414 ~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~~w~~~eaal~~l~~ia  492 (971)
T 2x1g_F          414 KSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYILEILAAMLDEAIADLQRHPTHWTKLEACIYSFQSVA  492 (971)
T ss_dssp             HTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHTT
T ss_pred             HhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHH
Confidence            432   11     0       2467888888888888776 34445566666666543     68999999999999999


Q ss_pred             cccChh--hhhhhhHHHHHhhc-cCCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          299 PVMGSE--ITCSRLLPVVINAS-KDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       299 ~~~~~~--~~~~~~l~~l~~~l-~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                      +.+...  .....+++.+..+. .|+++.||..++.+++.+...+... .+...+++.+...+ |  +.|+..|+.|+..
T Consensus       493 e~~~~~~~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l-~--~~v~~~A~~al~~  569 (971)
T 2x1g_F          493 EHFGGEEKRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL-N--SSMSAQATLGLKE  569 (971)
T ss_dssp             TC------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-H--SSCHHHHHHHHHH
T ss_pred             hhcChhhhHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-C--hHHHHHHHHHHHH
Confidence            887753  34556666443333 2568899999999999999877632 45567777777766 4  8899999999999


Q ss_pred             HHHHh
Q 016814          375 IDHVM  379 (382)
Q Consensus       375 ~~~~~  379 (382)
                      +....
T Consensus       570 l~~~~  574 (971)
T 2x1g_F          570 LCRDC  574 (971)
T ss_dssp             HHHHC
T ss_pred             HHHHH
Confidence            88654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=99.52  E-value=6.6e-11  Score=118.09  Aligned_cols=360  Identities=11%  Similarity=0.111  Sum_probs=234.2

Q ss_pred             HHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----cCCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcC
Q 016814           12 SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----QDKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLR   85 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~   85 (382)
                      ..|+.+.+.+..++...+ +...+.+++.+.+.+    .+.+|..|++++.+++.+++.+..+.  ....+++.+.++ .
T Consensus       422 ~~r~~~~~~L~~~~~~~~-~~~l~~~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~~~~l~~l~~~l~~l-~  499 (963)
T 2x19_B          422 IYRVDISDTLMYVYEMLG-AELLSNLYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRI-S  499 (963)
T ss_dssp             HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSCCSHHHHHHHHGGGS-C
T ss_pred             HHHHHHHHHHHHHHHHcc-HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchhhHHHHHHHHHHHhC-C
Confidence            357888888888887665 345566677776666    67899999999999999998876532  112344433333 4


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhh
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLL  162 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l  162 (382)
                      ++++.||..++.+++.+.+.+... .+...+++.+...+.+  +.|+..++.++..+++..+...  ..+.+++.+.+++
T Consensus       500 ~~~~~vr~~~~~~l~~~~~~l~~~~~~l~~vl~~l~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~~~il~~l~~~l  577 (963)
T 2x19_B          500 ISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGN--PELSVSSVSTLKKICRECKYDLPPYAANIVAVSQDVL  577 (963)
T ss_dssp             CCSHHHHHHHHHHHHHTHHHHHHCHHHHTTTHHHHHHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            457889999999999999876432 4566788888888866  7899999999999987554332  2355666666666


Q ss_pred             cC--CChHHHHHHHHhhHHhhhhhchhhH---hhhHHHHHHHHh----cC-CCchHHH---HHHHHhHHHHhhhch----
Q 016814          163 KD--EFPDVRLNIISKLDQVNQVIGIDLL---SQSLLPAIVELA----ED-RHWRVRL---AIIEYIPLLASQLGV----  225 (382)
Q Consensus       163 ~d--~~~~vr~~~~~~l~~~~~~~~~~~~---~~~llp~l~~~~----~d-~~~~vr~---~~~~~l~~l~~~~~~----  225 (382)
                      ..  -+...|..+.++++.++...+.+..   .+.+++.+...+    +. .+...+.   ..+++++.++..++.    
T Consensus       578 ~~~~~~~~~~~~~~eai~~i~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~  657 (963)
T 2x19_B          578 MKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHE  657 (963)
T ss_dssp             HTTCSCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC
T ss_pred             ccCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence            54  3578999999999999877653322   234444443332    22 2444444   455666666666542    


Q ss_pred             --------------------hhhHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHHhChHH--HHhhhHHHHHhhhcC
Q 016814          226 --------------------GFFDDKLGALCMQWLQD--KVYSIRDAAANNLKRLAEEFGPEW--AMQHITPQVLEMINN  281 (382)
Q Consensus       226 --------------------~~~~~~l~~~l~~~l~d--~~~~vr~~a~~~l~~~~~~~~~~~--~~~~l~~~l~~~l~~  281 (382)
                                          ..+.+.++|.+...+..  .+..+.+.++..++.++..+|...  +...+++.+...+..
T Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~~~~~~~l~~~~~~l~~~~~~  737 (963)
T 2x19_B          658 DDHEGPELRKLPVPQGPNPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMYST  737 (963)
T ss_dssp             ---------------CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSSTTGGGHHHHHHHHHHHHHH
T ss_pred             ccccccccccCCCCCCCCchHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHc
Confidence                                11335667776666542  356899999999999998887543  333344444443332


Q ss_pred             cchHHHHHHHHHHHHhccccChh----h----hhhhhHHHHHhhcc-C--CCccHHHHHHHHHHHHhhhhhHHHH-----
Q 016814          282 PHYLYRMTILRAISLLAPVMGSE----I----TCSRLLPVVINASK-D--RVPNIKFNVAKVLQSLIPIVDQSMV-----  345 (382)
Q Consensus       282 ~~~~~r~~a~~~l~~l~~~~~~~----~----~~~~~l~~l~~~l~-d--~~~~vR~~a~~~l~~i~~~~~~~~~-----  345 (382)
                      ...   ...+..++.++..++..    .    +.+.++..++..+. +  ..+++|......+..+........+     
T Consensus       738 ~~~---~~~l~l~~~li~~f~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~pd~~~~~f~ll~~~~~~~~~~~~~~~~~  814 (963)
T 2x19_B          738 IPQ---ASALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKRKPDLFLCERLD  814 (963)
T ss_dssp             SCC---HHHHHHHHHHHHHHTTCTTTCHHHHHHHHHHHHHHHHHHHHCTTTCHHHHHHHHHHHHHHHHHCGGGGGCTTSC
T ss_pred             CCc---cHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhhCcccCchHHHHHHHHHHHHHHhCcHHHcCCccc
Confidence            111   13445555555533221    1    22333333333333 2  3588999999999999876554322     


Q ss_pred             HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          346 EKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       346 ~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      ...+++.+...++.++..+...+...+..+...
T Consensus       815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~  847 (963)
T 2x19_B          815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPR  847 (963)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc
Confidence            466777777778888999999999888877654

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=99.51  E-value=1.2e-14  Score=118.74  Aligned_cols=164  Identities=21%  Similarity=0.215  Sum_probs=126.6

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      +..|++|+++.||..++..+       +.        +.+..+++|+++.||..++..+       +.        +.+.
T Consensus        79 l~~L~~D~~~~VR~~aA~~L-------~~--------~~L~~ll~D~d~~VR~~aA~~l-------~~--------~~L~  128 (244)
T 1lrv_A           79 LTPLIRDSDEVVRRAVAYRL-------PR--------EQLSALMFDEDREVRITVADRL-------PL--------EQLE  128 (244)
T ss_dssp             GGGGTTCSSHHHHHHHHTTS-------CS--------GGGGGTTTCSCHHHHHHHHHHS-------CT--------GGGG
T ss_pred             HHHHccCcCHHHHHHHHHHC-------CH--------HHHHHHHcCCCHHHHHHHHHhC-------CH--------HHHH
Confidence            57889999999999998642       22        3567889999999999999853       11        2345


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      .+++|+++.||.+++..+       +        .+.+..+++|+++.||..++..+       +.        +.+..+
T Consensus       129 ~L~~D~d~~VR~~aA~~l-------~--------~~~l~~l~~D~d~~VR~~aa~~l-------~~--------~ll~~l  178 (244)
T 1lrv_A          129 QMAADRDYLVRAYVVQRI-------P--------PGRLFRFMRDEDRQVRKLVAKRL-------PE--------ESLGLM  178 (244)
T ss_dssp             GGTTCSSHHHHHHHHHHS-------C--------GGGGGGTTTCSCHHHHHHHHHHS-------CG--------GGGGGS
T ss_pred             HHHcCCCHHHHHHHHHhc-------C--------HHHHHHHHcCCCHHHHHHHHHcC-------CH--------HHHHHH
Confidence            678999999999998732       1        24567889999999999998861       21        345578


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  241 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  241 (382)
                      ++|+++.||..++..+       +.        +.+..+++|++|.||..++..++               .+.+..+ +
T Consensus       179 l~D~d~~VR~aaa~~l-------~~--------~~L~~Ll~D~d~~VR~~aa~~l~---------------~~~L~~L-~  227 (244)
T 1lrv_A          179 TQDPEPEVRRIVASRL-------RG--------DDLLELLHDPDWTVRLAAVEHAS---------------LEALREL-D  227 (244)
T ss_dssp             TTCSSHHHHHHHHHHC-------CG--------GGGGGGGGCSSHHHHHHHHHHSC---------------HHHHHHC-C
T ss_pred             HcCCCHHHHHHHHHhC-------CH--------HHHHHHHcCCCHHHHHHHHHcCC---------------HHHHHHc-c
Confidence            9999999999999874       21        33556689999999999999975               1345556 9


Q ss_pred             cchhHHHHHHHHHHH
Q 016814          242 DKVYSIRDAAANNLK  256 (382)
Q Consensus       242 d~~~~vr~~a~~~l~  256 (382)
                      |++|.||..+...+|
T Consensus       228 D~~~~VR~aa~~~L~  242 (244)
T 1lrv_A          228 EPDPEVRLAIAGRLG  242 (244)
T ss_dssp             CCCHHHHHHHHCCC-
T ss_pred             CCCHHHHHHHHHHhC
Confidence            999999999988765

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.51  E-value=3.2e-11  Score=120.99  Aligned_cols=366  Identities=12%  Similarity=0.072  Sum_probs=239.3

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cc------------c--
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EP------------T--   72 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~------------~--   72 (382)
                      ++.+|...+.++..+++.--+ ..|+.+++.+.+.++ .++..+..+...|..+++.+..   +.            .  
T Consensus       113 ~~~i~~kl~~~ia~Ia~~~~p-~~Wp~ll~~L~~~~~-~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~  190 (1049)
T 3m1i_C          113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSS-SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK  190 (1049)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHc-cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHH
Confidence            478999999999999997544 458899998888886 5667788888888888865542   10            0  


Q ss_pred             -ccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHH-HHHhhhHhhhh-hcCCCchHHHHHHHHHHHhhccc-cCh
Q 016814           73 -RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPEL-AIQHILPCVKE-LSSDSSQHVRSALASVIMGMAPL-LGK  147 (382)
Q Consensus        73 -~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~-~~~~il~~l~~-~~~d~~~~vr~~a~~~l~~l~~~-~~~  147 (382)
                       ...+++.+.+.+.+ ++..++..+++++..+....+... ..+.+++.+.+ ++  .++.+|..++.++..+... .++
T Consensus       191 ~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~~~~~~~~ll~~l~~~~l--~~~~~~~~a~~~L~~i~~~~~~~  268 (1049)
T 3m1i_C          191 EFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFM--TSPDTRAITLKCLTEVSNLKIPQ  268 (1049)
T ss_dssp             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHH--HSHHHHHHHHHHHHHHHHCCCCT
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCHHHHhhhhHHHHHHHHhC--CCHhHHHHHHHHHHHHHhCCCCc
Confidence             11244555555543 357899999999999887766443 22345565553 33  2688999999999988754 222


Q ss_pred             H--hHH-------HhhHHHHHH-h-------------hcCCChHHHHHHHHhhHHhhhhhch--------hhHhhhHHHH
Q 016814          148 D--ATI-------EQLLPIFLS-L-------------LKDEFPDVRLNIISKLDQVNQVIGI--------DLLSQSLLPA  196 (382)
Q Consensus       148 ~--~~~-------~~l~~~l~~-~-------------l~d~~~~vr~~~~~~l~~~~~~~~~--------~~~~~~llp~  196 (382)
                      .  ...       ..++..+.. +             ..+.+.+.....++.+..+...+..        ......+++.
T Consensus       269 ~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  348 (1049)
T 3m1i_C          269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY  348 (1049)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Confidence            1  011       112222211 0             1234455555666665554432110        1112456777


Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhhh-----chhh---hHHHHHHHHHHHhcc----------------------chhH
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQL-----GVGF---FDDKLGALCMQWLQD----------------------KVYS  246 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~~-----~~~~---~~~~l~~~l~~~l~d----------------------~~~~  246 (382)
                      +..+...++..++..+++.+..+++.+     ....   +...+++.+...+.-                      .++.
T Consensus       349 ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~  428 (1049)
T 3m1i_C          349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1049)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHH
T ss_pred             HHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHH
Confidence            777777778888888888888877632     1122   234555665554311                      0125


Q ss_pred             HHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc--
Q 016814          247 IRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK--  319 (382)
Q Consensus       247 vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~--  319 (382)
                      .|.++...+..++. .+++.....+.+.+.+.+.  ..+|+.|++++.+++.++..++..   .+...+++.+.....  
T Consensus       429 ~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~  507 (1049)
T 3m1i_C          429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKK  507 (1049)
T ss_dssp             HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhh
Confidence            57777788888775 4455555666677766665  367999999999999998877654   345667776666432  


Q ss_pred             ---CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          320 ---DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       320 ---d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                         |+.+.+|..++.+++.....+.. ..+...+++.+...+.|+++.||..|+.|+..++...+
T Consensus       508 ~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll~~l~~~~~~V~~~A~~al~~l~~~~~  572 (1049)
T 3m1i_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCK  572 (1049)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHT
T ss_pred             ccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence               34566777899999988776543 34566777878888889999999999999999987543

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.51  E-value=1.2e-12  Score=106.23  Aligned_cols=187  Identities=15%  Similarity=0.108  Sum_probs=138.0

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---  264 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---  264 (382)
                      +...|.+..++.++++.+|..++..+..++..-..   .......+|.+..++.++++.+|..|+.+++.++.....   
T Consensus        11 ~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~   90 (210)
T 4db6_A           11 GSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ   90 (210)
T ss_dssp             --CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             cchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHH
Confidence            44566777777788888888888888877642211   122235678888888888889999999988888742111   


Q ss_pred             HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          265 EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       265 ~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      .......+|.+..++.+++..+|..++.++..++......   ......+|.++..+.++++.+|..++.+|..+.....
T Consensus        91 ~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~  170 (210)
T 4db6_A           91 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGN  170 (210)
T ss_dssp             HHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCc
Confidence            1233457889999999999999999999999988533221   2345688999999999999999999999999986522


Q ss_pred             HH---HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          342 QS---MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       342 ~~---~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ..   ......++.|.+++.++++++|..|..++..++.
T Consensus       171 ~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          171 EQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            21   2345788999999999999999999999988753

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.49  E-value=1.2e-12  Score=106.26  Aligned_cols=188  Identities=13%  Similarity=0.111  Sum_probs=138.1

Q ss_pred             hhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC--
Q 016814           33 CVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN--  107 (382)
Q Consensus        33 ~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~--  107 (382)
                      ..+...|.+..+++++++.+|..++..|..++..-..   .......+|.+++++.++++.+|..|+.+|++++....  
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            3455677888899999999999999999999842111   11223579999999999999999999999999874221  


Q ss_pred             -HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          108 -PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       108 -~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                       ........+|.+..+++++++.+|..++.+++.++......   ......+|.+.++++++++.+|..++.++..++..
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~  168 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG  168 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence             11333468899999999999999999999999998643221   12356789999999999999999999999988754


Q ss_pred             hchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          184 IGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       184 ~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                      -...   ......+|.+.+++.+++..+|..++..+..++
T Consensus       169 ~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~  208 (210)
T 4db6_A          169 GNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQ  208 (210)
T ss_dssp             CHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHh
Confidence            2111   112345677777777777777777777776654

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.48  E-value=7e-11  Score=110.43  Aligned_cols=370  Identities=9%  Similarity=0.029  Sum_probs=247.8

Q ss_pred             cCCchHHHHHHHHHHHHHHhccC-hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc-ccccchHHHHHHhc
Q 016814            7 SNDQDSVRLLAVEGCAALGKLLE-PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE-PTRMDLVPAYVRLL   84 (382)
Q Consensus         7 ~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~-~~~~~ll~~l~~~l   84 (382)
                      ..++..+...+++.+...+-.-. .+.+.+...+.+.+.+++  ..+|..++-.|.++...-+.. .....+.+.+.+.+
T Consensus       266 ~~~~~~~~~a~L~lLsaACi~~~cR~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L  343 (778)
T 3opb_A          266 EEQDLQFTKELLRLLSSACIDETMRTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAI  343 (778)
T ss_dssp             SSCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHT
T ss_pred             cccchHHHHHHHHHHHHHhCCcHHHHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHH
Confidence            34555566666666665543211 123344555666676654  477888888888877544332 22245888888888


Q ss_pred             CCCcHHHHHHHHHHHHHHHHhhCH-HHH--HHhhhHhhhhhcCC-CchHHHHHHHHHHHhhccccCh-------------
Q 016814           85 RDNEAEVRIAAAGKVTKFCRILNP-ELA--IQHILPCVKELSSD-SSQHVRSALASVIMGMAPLLGK-------------  147 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~~~~-~~~--~~~il~~l~~~~~d-~~~~vr~~a~~~l~~l~~~~~~-------------  147 (382)
                      .+++...|..|++.|..+...-.. +.+  .+.+++.+.+++++ .+..+--.++..+..+....+.             
T Consensus       344 ~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~  423 (778)
T 3opb_A          344 SRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXX  423 (778)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC-------
T ss_pred             hcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhh
Confidence            887666699999999988532111 111  13456777777764 4556677777777777542210             


Q ss_pred             -------------H-----------h----HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHH
Q 016814          148 -------------D-----------A----TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAI  197 (382)
Q Consensus       148 -------------~-----------~----~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l  197 (382)
                                   .           .    .....+|.+..+++.+++.+|..+++++..++..-..  ....+..+|.+
T Consensus       424 ~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~L  503 (778)
T 3opb_A          424 XXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKII  503 (778)
T ss_dssp             -----------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHH
T ss_pred             hccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHH
Confidence                         0           0    1145778888999999999999999999999754211  12235568888


Q ss_pred             HHHhcCCCch---HHHHHHHHhHHHHhhhchhhhH-----HHHHHHHHHHhcc-chh-------------HHHHHHHHHH
Q 016814          198 VELAEDRHWR---VRLAIIEYIPLLASQLGVGFFD-----DKLGALCMQWLQD-KVY-------------SIRDAAANNL  255 (382)
Q Consensus       198 ~~~~~d~~~~---vr~~~~~~l~~l~~~~~~~~~~-----~~l~~~l~~~l~d-~~~-------------~vr~~a~~~l  255 (382)
                      ..++.+....   .|..++.+|..+.....+....     ...+|.+..+|.. +..             --+..|+.+|
T Consensus       504 L~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~AL  583 (778)
T 3opb_A          504 LEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLAL  583 (778)
T ss_dssp             HHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHH
T ss_pred             HHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHH
Confidence            8888766543   8999999999988554433211     1467888888872 221             2277899999


Q ss_pred             HHHHHHhCh--H-----HHH-hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh--hhhhh----h---hHHHHHhhc
Q 016814          256 KRLAEEFGP--E-----WAM-QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS--EITCS----R---LLPVVINAS  318 (382)
Q Consensus       256 ~~~~~~~~~--~-----~~~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~--~~~~~----~---~l~~l~~~l  318 (382)
                      ..++..-+.  +     .+. ...+|.+.+++.+.+..+|.+|+++++.++..-..  ..+..    .   =++.++.++
T Consensus       584 TNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll  663 (778)
T 3opb_A          584 TNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL  663 (778)
T ss_dssp             HHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG
T ss_pred             HHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH
Confidence            999975321  1     123 25889999999999999999999999999854321  12211    1   277889999


Q ss_pred             cCCCccHHHHHHHHHHHHhhhhhH--H-HHH-HhHHHHHHHhcCC--CCccHHhHHHHHHHHHHHH
Q 016814          319 KDRVPNIKFNVAKVLQSLIPIVDQ--S-MVE-KTIRPCLVELTED--PDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       319 ~d~~~~vR~~a~~~l~~i~~~~~~--~-~~~-~~i~~~l~~l~~d--~~~~vr~~a~~al~~~~~~  378 (382)
                      ..++..+|.+|+.+|..+....+.  + ... ...++.+..++.+  .+.++|..++.++..++.+
T Consensus       664 ~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~  729 (778)
T 3opb_A          664 QLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEV  729 (778)
T ss_dssp             GCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred             cCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999998643332  1 222 2566777778878  8999999999999999864

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=99.47  E-value=2.1e-11  Score=116.24  Aligned_cols=302  Identities=11%  Similarity=0.029  Sum_probs=205.7

Q ss_pred             CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCC--------HHHHHHHHHHHHHHHHHhCCcccccchHHH
Q 016814            8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKS--------WRVRYMVANQLYELCEAVGPEPTRMDLVPA   79 (382)
Q Consensus         8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~--------~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~   79 (382)
                      .+++.+|..|+-++|.+......+     .+..+.+.+.+++        +.+|..++..||.+.-  |...  .++++.
T Consensus       406 s~~~~ik~GAllaLGli~ag~~~~-----~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~--GS~~--eev~e~  476 (963)
T 4ady_A          406 ASSRFIKGGSLYGLGLIYAGFGRD-----TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM--GSAN--IEVYEA  476 (963)
T ss_dssp             CSCHHHHHHHHHHHHHHTTTTTHH-----HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST--TCCC--HHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhcCCCcHH-----HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc--CCCC--HHHHHH
Confidence            567899999999999998877642     3444444444333        7899999999997553  3321  346777


Q ss_pred             HHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHH
Q 016814           80 YVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFL  159 (382)
Q Consensus        80 l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~  159 (382)
                      +.+.+.|++..+|..|+.++|-+.-.-+.+...+.++..+.   ++.+..+|+.++..|+-+.  +|++...+.+   +.
T Consensus       477 L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~---e~~~e~vrR~aalgLGll~--~g~~e~~~~l---i~  548 (963)
T 4ady_A          477 LKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQ---ETQHGNITRGLAVGLALIN--YGRQELADDL---IT  548 (963)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHT--TTCGGGGHHH---HH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHh---ccCcHHHHHHHHHHHHhhh--CCChHHHHHH---HH
Confidence            78777777788898898888876333333434444544443   4667789999999999774  3443333333   33


Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHH
Q 016814          160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW  239 (382)
Q Consensus       160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  239 (382)
                      .+..+.++.+|..++.+++--....|.....+.   .+..+.+|.+..||+.++..++.+.-  |...   .+...+..+
T Consensus       549 ~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~---LL~~~~~d~~d~VRraAViaLGlI~~--g~~e---~v~rlv~~L  620 (963)
T 4ady_A          549 KMLASDESLLRYGGAFTIALAYAGTGNNSAVKR---LLHVAVSDSNDDVRRAAVIALGFVLL--RDYT---TVPRIVQLL  620 (963)
T ss_dssp             HHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHH---HHHHHHHCSCHHHHHHHHHHHHHHTS--SSCS---SHHHHTTTG
T ss_pred             HHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHH---HHHHhccCCcHHHHHHHHHHHHhhcc--CCHH---HHHHHHHHH
Confidence            444578999999998888755444444322233   34444578888999999999987753  2221   122233335


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhh
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINA  317 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~  317 (382)
                      ..+.++.||..++.++|.+...-+.    ..++..+..+..|++..||..|+.+++.++......  +-...++..+...
T Consensus       621 ~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~  696 (963)
T 4ady_A          621 SKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSV  696 (963)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHH
Confidence            5678999999999999998743333    346777788889999999999999999987443322  2345566666777


Q ss_pred             ccC--CCccHHHHHHHHHHHHhh
Q 016814          318 SKD--RVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       318 l~d--~~~~vR~~a~~~l~~i~~  338 (382)
                      ..|  +.+..|..+.-+.|.+..
T Consensus       697 ~~dk~~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          697 ITNKHQEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             HHCSSSCHHHHHHHHHHHHHHTT
T ss_pred             HhcccccHHHHHHHHHHHHHHhc
Confidence            665  446689999888888753

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.43  E-value=5.8e-10  Score=83.56  Aligned_cols=216  Identities=16%  Similarity=0.152  Sum_probs=158.0

Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhchhhhHH
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLGVGFFDD  230 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  230 (382)
                      +.++..+..++.|.-+.|+.+++..+..+.+..+. .+ +.++..+..+ -+++.-..-..+++.++.++. ..|+.. .
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~-epl~~kL~vm~~ksEaIpltqeIa~a~G~la~-i~Pe~v-~  106 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LY-EPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAK-EKPELV-K  106 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH-HCHHHH-H
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HH-HHHHHHHHHHHhhcccCchHHHHHHHHhHHHH-hCHHHH-H
Confidence            56677777888888888888888888888776542 11 2333333333 356666667788888888875 444443 4


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL  310 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~  310 (382)
                      .++|.+..-..-.++.+|-....+++.++... + .....+..-+..++.+++..-|.+|+.+++.++.+-.  .+..=+
T Consensus       107 ~vVp~lfanyrigd~kikIn~~yaLeeIaran-P-~l~~~v~rdi~smltskd~~Dkl~aLnFi~alGen~~--~yv~Pf  182 (253)
T 2db0_A          107 SMIPVLFANYRIGDEKTKINVSYALEEIAKAN-P-MLMASIVRDFMSMLSSKNREDKLTALNFIEAMGENSF--KYVNPF  182 (253)
T ss_dssp             HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHC-H-HHHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTH--HHHGGG
T ss_pred             hhHHHHHHHHhcCCccceecHHHHHHHHHHhC-h-HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccCc--cccCcc
Confidence            68888887777778999999999999998764 2 2344566777888899999999999999998875422  256678


Q ss_pred             HHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          311 LPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       311 l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +|.++.+|.|.+.-||.++.++|+.++..-.  .+ ..+.....+=++|++..|......+++.+.-.
T Consensus       183 LprL~aLL~D~deiVRaSaVEtL~~lA~~np--kl-Rkii~~kl~e~~D~S~lv~~~V~egL~rl~l~  247 (253)
T 2db0_A          183 LPRIINLLHDGDEIVRASAVEALVHLATLND--KL-RKVVIKRLEELNDTSSLVNKTVKEGISRLLLL  247 (253)
T ss_dssp             HHHHHGGGGCSSHHHHHHHHHHHHHHHTSCH--HH-HHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHcCcchhhhHHHHHHHHHHHHcCH--HH-HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999986432  22 33333333457899999999999999887643

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.42  E-value=2.9e-11  Score=116.68  Aligned_cols=280  Identities=14%  Similarity=0.172  Sum_probs=213.7

Q ss_pred             HHHHHHHHHHHHHHhcc-ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC----cccccchHHHHHHhcCC
Q 016814           12 SVRLLAVEGCAALGKLL-EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP----EPTRMDLVPAYVRLLRD   86 (382)
Q Consensus        12 ~vR~~a~~~l~~l~~~~-~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~l~d   86 (382)
                      .-|+.++..+..+...- ........+...+.+.+.|+...  +.++..++.+++..+.    +.+.-.++|.++..+.|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~d  106 (986)
T 2iw3_A           29 DNRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGN  106 (986)
T ss_dssp             TTHHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcC
Confidence            34455665666554422 22222235777788888887555  9999999999977754    22223468999999999


Q ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCC-chHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhc
Q 016814           87 NEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS-SQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK  163 (382)
Q Consensus        87 ~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~  163 (382)
                      ....||.+|-.+...+...++++.. ..++|.+.+.+++. .|..+..++..+..++...+.+.  ..+.++|.+.+.+-
T Consensus       107 k~~~v~~aa~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  185 (986)
T 2iw3_A          107 KDKEIQSVASETLISIVNAVNPVAI-KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMW  185 (986)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCGGGH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTT
T ss_pred             CchHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcc
Confidence            9999999999999999999998866 67889999888655 69999999999999997664332  35899999999999


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-c---hhhhHHHHHHHHHHH
Q 016814          164 DEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-G---VGFFDDKLGALCMQW  239 (382)
Q Consensus       164 d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~---~~~~~~~l~~~l~~~  239 (382)
                      |.-++|...+.+++..++..++..++ +.++|.+.+++.+++.     .-+++..++..- -   ......-+.|++...
T Consensus       186 d~k~~v~~~~~~~~~~~~~~~~n~d~-~~~~~~~~~~~~~p~~-----~~~~~~~l~~~tfv~~v~~~~l~~~~p~l~r~  259 (986)
T 2iw3_A          186 DTKKEVKAAATAAMTKATETVDNKDI-ERFIPSLIQCIADPTE-----VPETVHLLGATTFVAEVTPATLSIMVPLLSRG  259 (986)
T ss_dssp             CSSHHHHHHHHHHHHHHGGGCCCTTT-GGGHHHHHHHHHCTTH-----HHHHHHHHTTCCCCSCCCHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHhcCCCcch-hhhHHHHHHHhcChhh-----hHHHHHHhhcCeeEeeecchhHHHHHHHHHhh
Confidence            99999999999999999999988888 8899999999988843     344444443211 0   112235789999999


Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChH----HHHhhhHHHHHhhhcC-cchHHHHHHHHHHHHhccc
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPE----WAMQHITPQVLEMINN-PHYLYRMTILRAISLLAPV  300 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~----~~~~~l~~~l~~~l~~-~~~~~r~~a~~~l~~l~~~  300 (382)
                      |+++...++..++-.+..+++.....    .|...++|.+...... .++.+|+.+-.++..+.+.
T Consensus       260 l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          260 LNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLRRV  325 (986)
T ss_dssp             HTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred             hccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999877653    3566677777665543 4689999998888887543

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.42  E-value=1e-09  Score=102.75  Aligned_cols=366  Identities=11%  Similarity=0.119  Sum_probs=237.5

Q ss_pred             CCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc----cC--CCH-HHHHHHHHHHHHHHHHhCCcccc-cchHHH
Q 016814            8 NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS----QD--KSW-RVRYMVANQLYELCEAVGPEPTR-MDLVPA   79 (382)
Q Consensus         8 d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~----~d--~~~-~vR~~a~~~l~~l~~~~~~~~~~-~~ll~~   79 (382)
                      -+.+.||..++-.+..+-+..+ +.+.+.+..++..++    .|  .++ .+--.++..+..+...+....+. ....|.
T Consensus       181 ~~~~~~~~~~l~i~~~~~~~~~-~~~~~~~~~~~~~l~~e~~~~~~~~~~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~  259 (778)
T 3opb_A          181 ISEDEVKSMMLIIFAELQSSFQ-KDFDKAVVDFMSSLIVEAEIDVGNDPLSIIVKTLSELYPSLTTLCSEIFLTKGLSKL  259 (778)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHTTTTHHHHHHHHSTTTHHHH
T ss_pred             cChhhhHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHhcCCHHHHHHHHccccHHHH
Confidence            3467888888888777776554 455566666666555    22  221 22222222222222222222222 235666


Q ss_pred             HHHhc-CCCcHHHHHHHHHHHHHHHH--hhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-HhHHHhhH
Q 016814           80 YVRLL-RDNEAEVRIAAAGKVTKFCR--ILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DATIEQLL  155 (382)
Q Consensus        80 l~~~l-~d~~~~VR~~a~~~l~~l~~--~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~~~~l~  155 (382)
                      +.+.+ ..++..+..++++.+...+.  .+ .+.+.++.++.+.+.+++  ..+|..++-.|..+...-+. +.....+.
T Consensus       260 l~~~~~~~~~~~~~~a~L~lLsaACi~~~c-R~~I~~~~~~~L~~~l~~--~~ir~lAavvL~KL~~~~~~~~~si~~La  336 (778)
T 3opb_A          260 FKKRVFEEQDLQFTKELLRLLSSACIDETM-RTYITENYLQLLERSLNV--EDVQIYSALVLVKTWSFTKLTCINLKQLS  336 (778)
T ss_dssp             HHHHHHSSCCHHHHHHHHHHHHHHCCSHHH-HHHHHHHHHHHHHHHTTS--GGGHHHHHHHHHHHTGGGTCTTCCHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHHHHHHhCCcHH-HHHHHHhHHHHHHHHhcc--HHHHHHHHHHHHHHhcCCCCCcCcHHHHH
Confidence            66665 34567788888888877653  23 445667788999998876  47888888888887654332 22346788


Q ss_pred             HHHHHhhcCCChHHHHHHHHhhHHhhhhhch-hhH--hhhHHHHHHHHhcC-CCchHHHHHHHHhHHHHhhhc-------
Q 016814          156 PIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-DLL--SQSLLPAIVELAED-RHWRVRLAIIEYIPLLASQLG-------  224 (382)
Q Consensus       156 ~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-~~~--~~~llp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~-------  224 (382)
                      +.+.+.+.++....|..+++.|..+.-.... +.+  .+.+++.+.+++++ .+..+...++..+..+.....       
T Consensus       337 ~~~~~~L~~~~~~~~~~AvEgLaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~  416 (778)
T 3opb_A          337 EIFINAISRRIVPKVEMSVEALAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXX  416 (778)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhh
Confidence            9999998887766688898888876432111 111  13456777777764 455566666666665543111       


Q ss_pred             -------------hh---------------------hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHH
Q 016814          225 -------------VG---------------------FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAM  268 (382)
Q Consensus       225 -------------~~---------------------~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~  268 (382)
                                   ++                     ......+|.+..+++++++.+|+.+++++..++..-..  ....
T Consensus       417 ~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq  496 (778)
T 3opb_A          417 XXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ  496 (778)
T ss_dssp             ------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH
T ss_pred             hhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                         00                     01123688899999999999999999999999854221  2244


Q ss_pred             hhhHHHHHhhhcCcchH---HHHHHHHHHHHhccccChhhhh-----hhhHHHHHhhccC-CCcc-------------HH
Q 016814          269 QHITPQVLEMINNPHYL---YRMTILRAISLLAPVMGSEITC-----SRLLPVVINASKD-RVPN-------------IK  326 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~---~r~~a~~~l~~l~~~~~~~~~~-----~~~l~~l~~~l~d-~~~~-------------vR  326 (382)
                      ...++.++.++.+....   .|..|+.++..+.-...+...+     ...+|.|+.+|.. +...             -+
T Consensus       497 qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~  576 (778)
T 3opb_A          497 QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDN  576 (778)
T ss_dssp             TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHH
T ss_pred             CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHH
Confidence            56788899998876543   8999999999987554443211     2688999999882 2211             27


Q ss_pred             HHHHHHHHHHhhhhhH-------HHHH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          327 FNVAKVLQSLIPIVDQ-------SMVE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       327 ~~a~~~l~~i~~~~~~-------~~~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ..|+.+|+.++..-++       ..+. ...+|.|..++.+.+..||.+|++++..++.
T Consensus       577 feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~  635 (778)
T 3opb_A          577 YEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS  635 (778)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence            7899999999886522       1333 2689999999988899999999999999874

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.41  E-value=3.7e-11  Score=98.48  Aligned_cols=174  Identities=16%  Similarity=0.155  Sum_probs=89.8

Q ss_pred             cCCCchHHHHHHHHhHHHHhhhchhhhH--HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH------HHHhhhHH
Q 016814          202 EDRHWRVRLAIIEYIPLLASQLGVGFFD--DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE------WAMQHITP  273 (382)
Q Consensus       202 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~------~~~~~l~~  273 (382)
                      -+++|+.|..+++.+.........+.+.  +-+++-+.-.+.|++..|-..+++.+..++..++..      .-...++|
T Consensus        56 fs~d~k~~~~ale~L~~~l~~~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~~~lP  135 (266)
T 2of3_A           56 FHKDFKQHLAALDSLVRLADTSPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVSAFVP  135 (266)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHCHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            3445555555555555544332221111  112222222233556666666666666655444321      11234566


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHH---
Q 016814          274 QVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIR---  350 (382)
Q Consensus       274 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~---  350 (382)
                      .+++.++|+...+|..+-..+..+...++++    .+++.+...+++.|+.+|..++..++.+...+|..  ....+   
T Consensus       136 ~LveKlGd~k~~vR~~~r~il~~l~~v~~~~----~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~l~~~  209 (266)
T 2of3_A          136 YLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL----KMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKSLSVE  209 (266)
T ss_dssp             HHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH----HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGGGCHH
T ss_pred             HHHHHhCCChHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--ccccccch
Confidence            6666666666666666666655555444432    34444555556666666666666666666655543  23344   


Q ss_pred             HHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          351 PCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       351 ~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      |.+.++++|+|.+||.+|..++..+....|+
T Consensus       210 ~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd  240 (266)
T 2of3_A          210 KTVAPFVGDKDVNVRNAAINVLVACFKFEGD  240 (266)
T ss_dssp             HHHGGGGGCSSHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHHHHhhH
Confidence            5566666666666666666666666555554

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=99.38  E-value=6.7e-10  Score=111.52  Aligned_cols=370  Identities=8%  Similarity=0.013  Sum_probs=231.9

Q ss_pred             CchHHHHHHHHHHHHHHhccC---h------------hhh---hhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC
Q 016814            9 DQDSVRLLAVEGCAALGKLLE---P------------QDC---VAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP   69 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~---~------------~~~---~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~   69 (382)
                      .++..+..+..++..+.....   .            +.+   .+.+++.+.+.++ ..+..++..+++++.......+.
T Consensus       149 ~~~~~~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~~  228 (1049)
T 3m1i_C          149 SSVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIPY  228 (1049)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCT
T ss_pred             cChHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCCH
Confidence            344556667777776664321   1            111   2334555555554 34678999999999877654443


Q ss_pred             cc-cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-----HHH----HhhhHhhhh--------------hcC
Q 016814           70 EP-TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-----LAI----QHILPCVKE--------------LSS  124 (382)
Q Consensus        70 ~~-~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-----~~~----~~il~~l~~--------------~~~  124 (382)
                      .. ....+++.+.+.+. .++.+|.+|++++..++..- ++.     ...    ..++..+..              ..+
T Consensus       229 ~~~~~~~ll~~l~~~~l-~~~~~~~~a~~~L~~i~~~~~~~~~~~~~~~~~~l~~~~l~~l~~si~p~~~~l~~~~~~~~  307 (1049)
T 3m1i_C          229 RYIYETNILELLSTKFM-TSPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANAN  307 (1049)
T ss_dssp             HHHHSSSHHHHHHTHHH-HSHHHHHHHHHHHHHHHHCCCCTTCHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHTC
T ss_pred             HHHhhhhHHHHHHHHhC-CCHhHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHHHHHHHHHHHhhCCCcccHHHHhccCC
Confidence            22 22456777663222 26889999999999988652 221     100    112222211              123


Q ss_pred             CCchHHHHHHHHHHHhhccccC------h--HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh--c---hhh---
Q 016814          125 DSSQHVRSALASVIMGMAPLLG------K--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI--G---IDL---  188 (382)
Q Consensus       125 d~~~~vr~~a~~~l~~l~~~~~------~--~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~--~---~~~---  188 (382)
                      |.+..+....++.+..+++...      +  ......+++.+......++.+++..++..+..+.+.+  .   ...   
T Consensus       308 ~~d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~l~~~l~~~~~~~~~~~~  387 (1049)
T 3m1i_C          308 GNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEE  387 (1049)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHSTTCGGGGHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence            4556666666666655543211      0  1123456677777767778899999988887776632  1   111   


Q ss_pred             HhhhHHHHHHHHhc---CCC-------------------chHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc--cch
Q 016814          189 LSQSLLPAIVELAE---DRH-------------------WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ--DKV  244 (382)
Q Consensus       189 ~~~~llp~l~~~~~---d~~-------------------~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~--d~~  244 (382)
                      +...+++.+...+.   |..                   |..|..+...+..++. .++....+.+.+.+...+.  ..+
T Consensus       388 ~l~~Lv~~ll~~m~~~ed~~~~~dd~~e~~r~~~~d~d~~~~~~~~~~~L~~l~~-~~~~~~l~~v~~~l~~~l~~~~~~  466 (1049)
T 3m1i_C          388 ICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQLYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWS  466 (1049)
T ss_dssp             HHHHHHHHHHHTCCCCTTCCEEECTTSCEEECSSCCHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHTSSSCC
T ss_pred             HHHHHHHHHHHhcCCCcceeeeeCCCCcchHhhhccchHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHhCCCCCC
Confidence            12334444444321   111                   2346677777777764 4444445667777777775  468


Q ss_pred             hHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc-----CcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHH
Q 016814          245 YSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN-----NPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVI  315 (382)
Q Consensus       245 ~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~  315 (382)
                      |..|++++.+++.+++.++.+   .+...+++.+..+..     ++++.+|..++++++++++.+... .+...+++.++
T Consensus       467 W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~~ll  546 (1049)
T 3m1i_C          467 WHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLF  546 (1049)
T ss_dssp             HHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999999999998766553   234556666555332     345667778999999988765532 47788899999


Q ss_pred             hhccCCCccHHHHHHHHHHHHhhhhhHH----------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          316 NASKDRVPNIKFNVAKVLQSLIPIVDQS----------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       316 ~~l~d~~~~vR~~a~~~l~~i~~~~~~~----------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ..+.|+++.||..|+.++..++...+..          .+...++..+..+..+.+.+-+....++++.++...+
T Consensus       547 ~~l~~~~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~~~~  621 (1049)
T 3m1i_C          547 EFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER  621 (1049)
T ss_dssp             HHTTSSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHHTCC
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999999876643          2245666666666777666667788888888877665

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.38  E-value=8.1e-12  Score=105.85  Aligned_cols=182  Identities=16%  Similarity=0.172  Sum_probs=125.4

Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH-------HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH----
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD-------DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE----  265 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~-------~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~----  265 (382)
                      +.+-+.+++|..|..+++.+..+..........       ..+.+.+...+.|.+..|...++.++..++..++..    
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            445667888888888888887766543321111       123456667778888888888888888888765532    


Q ss_pred             ----HHHhhhHHHHHhh-hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhh
Q 016814          266 ----WAMQHITPQVLEM-INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIV  340 (382)
Q Consensus       266 ----~~~~~l~~~l~~~-l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~  340 (382)
                          .+...++|.+++. +.|+...+|..+..++..++...+.   ...+++.+...+++.+|.+|..++.+|..+...+
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~---~~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~f  170 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTS---ITQSVELVIPFFEKKLPKLIAAAANCVYELMAAF  170 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSS---SHHHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHh
Confidence                1335567777764 6788888888888888777654442   2345566777888888888888888888888777


Q ss_pred             hHH-----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          341 DQS-----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       341 ~~~-----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      |..     .....+++.+.++++|++++||..|...+..+...+|+
T Consensus       171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~  216 (278)
T 4ffb_C          171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGN  216 (278)
T ss_dssp             TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC---
T ss_pred             CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCc
Confidence            643     23345666777788888888888888888888887774

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.37  E-value=1.3e-10  Score=101.19  Aligned_cols=253  Identities=13%  Similarity=0.046  Sum_probs=178.3

Q ss_pred             HHHHHHHHHHHHHHHHhC--CcccccchHHHHHHhcC----------C-CcHHHHHHHHHHHHHHHHhhC--HHHH--HH
Q 016814           51 RVRYMVANQLYELCEAVG--PEPTRMDLVPAYVRLLR----------D-NEAEVRIAAAGKVTKFCRILN--PELA--IQ  113 (382)
Q Consensus        51 ~vR~~a~~~l~~l~~~~~--~~~~~~~ll~~l~~~l~----------d-~~~~VR~~a~~~l~~l~~~~~--~~~~--~~  113 (382)
                      .....++..|++++..-.  ........+|.+++++.          + .++.++..|+.+|.+++..-.  +..+  ..
T Consensus        47 ~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           47 HQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             GTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            444566777777763210  01112346777777763          1 247799999999999975322  1222  24


Q ss_pred             hhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---Hh-HHHhhHHHHHHh-hcCCChHHHHHHHHhhHHhhhhhc--h
Q 016814          114 HILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DA-TIEQLLPIFLSL-LKDEFPDVRLNIISKLDQVNQVIG--I  186 (382)
Q Consensus       114 ~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~-~~~~l~~~l~~~-l~d~~~~vr~~~~~~l~~~~~~~~--~  186 (382)
                      .++|.+..++.+.++.++..++.+|..++..-+.   +. .....+|.+.++ .+..++.++..++.++..++....  .
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk  206 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK  206 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhh
Confidence            5699999999999999999999999999754221   11 224567888886 566788999998888888875221  1


Q ss_pred             hhH--hhhHHHHHHHHhcCCCc----hHHHHHHHHhHHHHhhh--chhh----hHHHHHHHHHHHhccchhHHHHHHHHH
Q 016814          187 DLL--SQSLLPAIVELAEDRHW----RVRLAIIEYIPLLASQL--GVGF----FDDKLGALCMQWLQDKVYSIRDAAANN  254 (382)
Q Consensus       187 ~~~--~~~llp~l~~~~~d~~~----~vr~~~~~~l~~l~~~~--~~~~----~~~~l~~~l~~~l~d~~~~vr~~a~~~  254 (382)
                      ..+  ....+|.|.+++.+.+.    .++..++..|..++..+  +++.    .....+|.+..++.+.+..+++.|+.+
T Consensus       207 ~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~a  286 (354)
T 3nmw_A          207 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT  286 (354)
T ss_dssp             HHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHH
Confidence            222  24678999999876654    58899999998887531  2211    123468999999999999999999999


Q ss_pred             HHHHHHHhChH----HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh
Q 016814          255 LKRLAEEFGPE----WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE  304 (382)
Q Consensus       255 l~~~~~~~~~~----~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~  304 (382)
                      +..++.. ..+    ......+|.+.+++.+++..+|+.|+.++..++..-+..
T Consensus       287 L~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          287 LWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            9999742 111    133467899999999999999999999999998764443

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=99.36  E-value=4.7e-10  Score=110.65  Aligned_cols=337  Identities=12%  Similarity=0.159  Sum_probs=214.5

Q ss_pred             hhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc-ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC-HHHHHHhhh-
Q 016814           40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT-RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN-PELAIQHIL-  116 (382)
Q Consensus        40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~-~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~-~~~~~~~il-  116 (382)
                      ++..+....++.++..++++++....-.+.... ...+++.+.+++.+  +.+|.+|+++|..+...-. ++.. ..++ 
T Consensus       197 iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k-~~li~  273 (980)
T 3ibv_A          197 MMLAYSNAKNYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEK-LNLLN  273 (980)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTSCHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHH-HHHHH
T ss_pred             HHHHHhccCCHHHHHHHHHHHHHHHhhcCHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhH-HHHHH
Confidence            333333346778888999998887764433322 24688999999886  7899999999999876543 3321 1111 


Q ss_pred             -----HhhhhhcC-CCchHHHHHHHHHHHhhccc------cC----hH------hHHHhhHHHHHHhhcCCChHHHHHHH
Q 016814          117 -----PCVKELSS-DSSQHVRSALASVIMGMAPL------LG----KD------ATIEQLLPIFLSLLKDEFPDVRLNII  174 (382)
Q Consensus       117 -----~~l~~~~~-d~~~~vr~~a~~~l~~l~~~------~~----~~------~~~~~l~~~l~~~l~d~~~~vr~~~~  174 (382)
                           +.+..+.. +.+..++...++.+..++..      .+    .+      .....++|.+..+..+++.+|-..++
T Consensus       274 ~l~L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~  353 (980)
T 3ibv_A          274 ILNLNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVF  353 (980)
T ss_dssp             HHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTH
T ss_pred             HHhHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence                 22222222 45666666666655444321      11    00      23357889999999888888888777


Q ss_pred             HhhHHhhhhhch--------hhH---hhhHHHHHHHHh---cCCCc-------------hHHHHHHHHhHHHHhhhchhh
Q 016814          175 SKLDQVNQVIGI--------DLL---SQSLLPAIVELA---EDRHW-------------RVRLAIIEYIPLLASQLGVGF  227 (382)
Q Consensus       175 ~~l~~~~~~~~~--------~~~---~~~llp~l~~~~---~d~~~-------------~vr~~~~~~l~~l~~~~~~~~  227 (382)
                      ..+..+......        +.+   ...+++.+..-+   .|.+|             ..|+... .+-.....+|++.
T Consensus       354 ~Fw~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~-~l~d~~~~l~~~~  432 (980)
T 3ibv_A          354 PFLSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLK-IFQDTINSIDSSL  432 (980)
T ss_dssp             HHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHH-HHHHHHHHHCHHH
T ss_pred             HHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHH-HHHHHHHhcChHH
Confidence            776665543221        111   122233322222   12122             3566666 6666667778877


Q ss_pred             hHH----HHHHHHHHHh---ccchhHHHHHHHHHHHHHHHHhChH--------HHHhhhHHHHHhhhc-----CcchHHH
Q 016814          228 FDD----KLGALCMQWL---QDKVYSIRDAAANNLKRLAEEFGPE--------WAMQHITPQVLEMIN-----NPHYLYR  287 (382)
Q Consensus       228 ~~~----~l~~~l~~~l---~d~~~~vr~~a~~~l~~~~~~~~~~--------~~~~~l~~~l~~~l~-----~~~~~~r  287 (382)
                      +.+    .+.+.+.+.+   .+.+|+.+++++.+++.+++.+...        .....+++.+..++.     ++++.+|
T Consensus       433 ~l~~~~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~  512 (980)
T 3ibv_A          433 FSSYMYSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQ  512 (980)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            777    5666666655   3568999999999999999876531        112346666666654     7889999


Q ss_pred             HHHHHHHHHhccccChh-hhhhhhHHHHHh--hccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCC---
Q 016814          288 MTILRAISLLAPVMGSE-ITCSRLLPVVIN--ASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTED---  359 (382)
Q Consensus       288 ~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~--~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d---  359 (382)
                      .++++++++.++.+... .+...+++.++.  ++.++++.||.+|+.++..+.+..+..  .+...++..+..++.-   
T Consensus       513 ~~~~~~l~rys~~~~~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~~L~~~~~~il~~l~~lL~~~~~  592 (980)
T 3ibv_A          513 LLYMEILVRYASFFDYESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKKQVVNYTESSLAMLGDLLNISVS  592 (980)
T ss_dssp             HHHHHHHHHTGGGGGTCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTTTCSSSHHHHHHHTTGGGCCCCC
T ss_pred             HHHHHHHHHHHHHHhcCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHHhhcCcCC
Confidence            99999999999887643 467778888888  888899999999999999999877643  1223344444444331   


Q ss_pred             C----C--------------ccHHhHHHHHHHHHHHHhc
Q 016814          360 P----D--------------VDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       360 ~----~--------------~~vr~~a~~al~~~~~~~~  380 (382)
                      +    +              .+=+....+|++.+....+
T Consensus       593 ~~~~~~~~~~~~~~~~~~~~~~~ql~L~eaig~li~~~~  631 (980)
T 3ibv_A          593 PVTDMDAPVPTLNSSIRNSDFNSQLYLFETVGVLISSGN  631 (980)
T ss_dssp             CCCC--CSSCCHHHHHHTTTHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCcccccccchhhhcccCCchHHHHHHHHHHHHHhCCC
Confidence            1    0              1135678888888887755

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.33  E-value=2.9e-10  Score=98.95  Aligned_cols=253  Identities=12%  Similarity=0.050  Sum_probs=179.2

Q ss_pred             HHHHHHHHHHHHHHHHhh--CHHHHHHhhhHhhhhhcC-----------CCchHHHHHHHHHHHhhccccC-h-HhH--H
Q 016814           89 AEVRIAAAGKVTKFCRIL--NPELAIQHILPCVKELSS-----------DSSQHVRSALASVIMGMAPLLG-K-DAT--I  151 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~--~~~~~~~~il~~l~~~~~-----------d~~~~vr~~a~~~l~~l~~~~~-~-~~~--~  151 (382)
                      .+....|+.+|++++..-  .........+|.+..++.           ..++.++..++.+|..++..-+ . ...  .
T Consensus        46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~  125 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM  125 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence            344556777888775431  111223356666666663           1357899999999999985432 1 112  2


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhH-hhhHHHHHHHH-hcCCCchHHHHHHHHhHHHHhhhc--
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLL-SQSLLPAIVEL-AEDRHWRVRLAIIEYIPLLASQLG--  224 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~-~~~llp~l~~~-~~d~~~~vr~~~~~~l~~l~~~~~--  224 (382)
                      ...+|.+.+++.+++++++..++.+|..+...-+   .+.+ ....+|.+.++ ..+.+..++..++..+..++....  
T Consensus       126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~n  205 (354)
T 3nmw_A          126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN  205 (354)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhh
Confidence            4568999999999999999999999998865311   1222 23468888886 566788999999999998876321  


Q ss_pred             -hhhh-HHHHHHHHHHHhccchh----HHHHHHHHHHHHHHHHh--ChHH----HHhhhHHHHHhhhcCcchHHHHHHHH
Q 016814          225 -VGFF-DDKLGALCMQWLQDKVY----SIRDAAANNLKRLAEEF--GPEW----AMQHITPQVLEMINNPHYLYRMTILR  292 (382)
Q Consensus       225 -~~~~-~~~l~~~l~~~l~d~~~----~vr~~a~~~l~~~~~~~--~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~  292 (382)
                       .... ....+|.+..++.+++.    ++++.|+.++..++...  +.+.    .....+|.+.+++.+++..++..|+.
T Consensus       206 k~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~  285 (354)
T 3nmw_A          206 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACG  285 (354)
T ss_dssp             HHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHH
Confidence             2222 24578899999986544    69999999999888631  2221    22357899999999999999999999


Q ss_pred             HHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          293 AISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       293 ~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      ++..++......   ....-.+|.|..++.++++.+|..|+.+|..+...-+
T Consensus       286 aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          286 TLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            999997432211   2234578999999999999999999999999987533

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=99.33  E-value=1.9e-09  Score=80.76  Aligned_cols=216  Identities=16%  Similarity=0.150  Sum_probs=160.1

Q ss_pred             HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh
Q 016814          113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS  192 (382)
Q Consensus       113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~  192 (382)
                      ..++..+..++.|.-|.|+..++..+..+++..+. ...+.+-..+.-+-+++.-......++++|.++.. .++.+ ..
T Consensus        31 ~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~e-l~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i-~Pe~v-~~  107 (253)
T 2db0_A           31 ESVLKKLIELLDDDLWTVVKNAISIIMVIAKTRED-LYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKE-KPELV-KS  107 (253)
T ss_dssp             HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH-CHHHH-HH
T ss_pred             HHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHH-HHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHh-CHHHH-Hh
Confidence            45778888899999999999999999988875542 11111112222223567777878888999988764 44444 77


Q ss_pred             HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhH
Q 016814          193 LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHIT  272 (382)
Q Consensus       193 llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~  272 (382)
                      ++|.+..-..-.++++|......++.++...+ +. ...+..-+..++.+++..-|..|+..++.+..+ +. .+..-++
T Consensus       108 vVp~lfanyrigd~kikIn~~yaLeeIaranP-~l-~~~v~rdi~smltskd~~Dkl~aLnFi~alGen-~~-~yv~PfL  183 (253)
T 2db0_A          108 MIPVLFANYRIGDEKTKINVSYALEEIAKANP-ML-MASIVRDFMSMLSSKNREDKLTALNFIEAMGEN-SF-KYVNPFL  183 (253)
T ss_dssp             HHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-HH-HHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCTT-TH-HHHGGGH
T ss_pred             hHHHHHHHHhcCCccceecHHHHHHHHHHhCh-HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcc-Cc-cccCcch
Confidence            88888877666788999999999999886433 22 234566677888999988899988887776542 22 2456689


Q ss_pred             HHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          273 PQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       273 ~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      |.++.++.|.+.-+|.++.+++..++..-+.   ...++..-+.-++|++..|....-++|+.+.-
T Consensus       184 prL~aLL~D~deiVRaSaVEtL~~lA~~npk---lRkii~~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          184 PRIINLLHDGDEIVRASAVEALVHLATLNDK---LRKVVIKRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HHHHGGGGCSSHHHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCcchhhhHHHHHHHHHHHHcCHH---HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999864332   44556666778899999999888888888753

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.33  E-value=3.7e-11  Score=103.36  Aligned_cols=303  Identities=11%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             HHHHHHHHHHHHHHHhCCccc---ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCch
Q 016814           52 VRYMVANQLYELCEAVGPEPT---RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQ  128 (382)
Q Consensus        52 vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~  128 (382)
                      .|....+.+.-+..  |+...   ...+.+.+.+++.+++...|+.+.-.+..+++. .++ .. -+...+.+-++|+++
T Consensus        44 c~~~l~kll~l~~~--G~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e-~i-Lv~Nsl~kDl~~~N~  118 (355)
T 3tjz_B           44 CAHILTKILYLINQ--GEHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AED-VI-IVTSSLTKDMTGKED  118 (355)
T ss_dssp             HHHHHHHHHHHHHH--TCCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSC-GG-GGHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHHHHHC--CCCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHH-HH-HHHHHHHhhcCCCcH
Confidence            34455565554443  33221   134677778899999999999999999888776 333 22 456677788899999


Q ss_pred             HHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchH
Q 016814          129 HVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRV  208 (382)
Q Consensus       129 ~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~v  208 (382)
                      .+|..|+++++.+..    ....+.+.+.+.+.+.|.++.||+.|+-+...+.... ++.. +.+++.+.+++.|+++.|
T Consensus       119 ~iR~lALRtL~~I~~----~~m~~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~-pe~v-~~~~~~l~~ll~d~n~~V  192 (355)
T 3tjz_B          119 SYRGPAVRALCQITD----STMLQAIERYMKQAIVDKVPSVSSSALVSSLHLLKCS-FDVV-KRWVNEAQEAASSDNIMV  192 (355)
T ss_dssp             HHHHHHHHHHHHHCC----TTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTC-HHHH-HTTHHHHHHHTTCSSHHH
T ss_pred             hHHHHHHHHHhcCCC----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccC-HHHH-HHHHHHHHHHhcCCCccH
Confidence            999999999999974    3346788999999999999999999999988887653 3444 678899999999999999


Q ss_pred             HHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHH
Q 016814          209 RLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRM  288 (382)
Q Consensus       209 r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~  288 (382)
                      ...++..+..+... +.. ...++++.+... .-.++...-..++.+..+...- .+.....+++.+...+++.+..|..
T Consensus       193 ~~~Al~lL~ei~~~-d~~-a~~kLv~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvy  268 (355)
T 3tjz_B          193 QYHALGLLYHVRKN-DRL-AVSKMISKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVY  268 (355)
T ss_dssp             HHHHHHHHHHHHTT-CHH-HHHHHHHHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHH
T ss_pred             HHHHHHHHHHHHhh-chH-HHHHHHHHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHH
Confidence            98888888877653 211 122344433221 0112333333334333333211 0123456888888999999999999


Q ss_pred             HHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHH
Q 016814          289 TILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA  368 (382)
Q Consensus       289 ~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a  368 (382)
                      .|+.++..+.. .+.. ......+.+..++.++.+++|..+++.|..+......  .....-..+..+++|++..++..|
T Consensus       269 Ea~k~I~~l~~-~~~~-~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~A  344 (355)
T 3tjz_B          269 EAASAIVNLPG-CSAK-ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLA  344 (355)
T ss_dssp             HHHHHHTC-------------CCCTHHHHHHSSSSSSHHHHHHCC-----------------------------------
T ss_pred             HHHHHHHhccC-CCHH-HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHH
Confidence            99999988754 2222 2333445566678788899999999999999875432  334566777889999999998888


Q ss_pred             HHHHH
Q 016814          369 TQAIQ  373 (382)
Q Consensus       369 ~~al~  373 (382)
                      ..++=
T Consensus       345 ittll  349 (355)
T 3tjz_B          345 ITTLL  349 (355)
T ss_dssp             -----
T ss_pred             HHHhh
Confidence            77654

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.32  E-value=3.5e-09  Score=104.70  Aligned_cols=359  Identities=11%  Similarity=0.093  Sum_probs=220.5

Q ss_pred             HHHHHHHhccChhhhhhhhhhhhhhhcc--CCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcC-----CCc
Q 016814           19 EGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLR-----DNE   88 (382)
Q Consensus        19 ~~l~~l~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~-----d~~   88 (382)
                      +++..+... .+++..+.+++.+.+.+.  +.+|..|++++-++|.++..+.++   .....++|.+.+++.     |+.
T Consensus       435 d~L~~l~~l-~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k  513 (1023)
T 4hat_C          435 EVLVYLTHL-NVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNK  513 (1023)
T ss_dssp             HHHHHHHHH-CHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHH
T ss_pred             HHHHHHhcc-CHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcch
Confidence            555555443 344667778888777665  368999999999999999866643   233467888888776     456


Q ss_pred             HHHHHHHHHHHHHHHHhhCH-HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----------HHHhhHHH
Q 016814           89 AEVRIAAAGKVTKFCRILNP-ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----------TIEQLLPI  157 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~-~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~  157 (382)
                      ..||..++..+|++.+.+.. ..+...++..+.+.+.|+++.|...|+.++..+++..+...          +.+.++..
T Consensus       514 ~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~~~il~~  593 (1023)
T 4hat_C          514 AVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFIQTIIRD  593 (1023)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhHHHHHHH
Confidence            77899999999999887632 23456777888888889999999999999999998766433          34555566


Q ss_pred             HHHhhcCCChHHHHHHHHhhHHhhhhhchhh----HhhhHHHHHHH----Hh----cCCC-c------hHHHHHHHHhHH
Q 016814          158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDL----LSQSLLPAIVE----LA----EDRH-W------RVRLAIIEYIPL  218 (382)
Q Consensus       158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~----~~~~llp~l~~----~~----~d~~-~------~vr~~~~~~l~~  218 (382)
                      +.+...+-.+.-+..+..+++.+.+..+.+.    +.+.+++.+..    +.    .+++ |      +.-..+++++..
T Consensus       594 l~~~~~~l~~~~~~~lyeai~~vi~~~~~~~~~~~~l~~L~~~~~~~~~~l~~~~~~~~~~~~d~~~~~~l~~il~~~~~  673 (1023)
T 4hat_C          594 IQKTTADLQPQQVHTFYKACGIIISEERSVAERNRLLSDLMQLPNMAWDTIVEQSTANPTLLLDSETVKIIANIIKTNVA  673 (1023)
T ss_dssp             HHHHHTTSCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHTHHHHHHHHHHHHHHHHCTTGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHhCCCHhhHHHHHHHHHHhHHHHHHHHHHHHhcCchhhcCHHHHHHHHHHHHHHHH
Confidence            6666666677888899999999998887543    22333333322    22    1221 1      222345666777


Q ss_pred             HHhhhchhhhH--HHHHHHHHHHhc-----------------cchh------HHHHHHHHHHHHHHHHhCh-HHHHhhhH
Q 016814          219 LASQLGVGFFD--DKLGALCMQWLQ-----------------DKVY------SIRDAAANNLKRLAEEFGP-EWAMQHIT  272 (382)
Q Consensus       219 l~~~~~~~~~~--~~l~~~l~~~l~-----------------d~~~------~vr~~a~~~l~~~~~~~~~-~~~~~~l~  272 (382)
                      ++..+|..+..  ..+.+.+.+..+                 ...+      .||+..++.+..++..... +.....++
T Consensus       674 v~~~lg~~f~~~~~~i~~~~l~~y~~~s~~i~~~~~~~g~~~~~~~~~r~~r~ik~~il~l~~~~i~~~~~~~~~~~~~~  753 (1023)
T 4hat_C          674 VCTSMGADFYPQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLV  753 (1023)
T ss_dssp             HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGGSHHHHHHHHHHHHHHHHHHHHHHHCSCHHHHHHHTH
T ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHhH
Confidence            77777765432  122222222110                 0111      3455556666666655432 33344455


Q ss_pred             HHHHhh----hcCcchHHHHH-HHHHHHHhccccChh------hhhhhhHHHHHhhccC---CCccHHHHHHHHHHHHhh
Q 016814          273 PQVLEM----INNPHYLYRMT-ILRAISLLAPVMGSE------ITCSRLLPVVINASKD---RVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       273 ~~l~~~----l~~~~~~~r~~-a~~~l~~l~~~~~~~------~~~~~~l~~l~~~l~d---~~~~vR~~a~~~l~~i~~  338 (382)
                      |.+.+.    +.+..+..|+. .+.+...+...+|..      ...+.++...+.++++   ..|+.|..-.+.+..+..
T Consensus       754 ~~l~~~vl~dY~~~~~~~r~~~vL~l~s~iv~~~~~~~~~~~~~il~~vf~~Tl~mi~~~~~~~Pe~r~~ff~ll~~~~~  833 (1023)
T 4hat_C          754 EPLLNAVLEDYMNNVPDARDAEVLNCMTTVVEKVGHMIPQGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINE  833 (1023)
T ss_dssp             HHHHHHHHHHHHHSCGGGCCHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChhhccHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHH
Confidence            544332    22222333332 334444444444432      2334444444555554   578899999999988876


Q ss_pred             hhhHH------HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          339 IVDQS------MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       339 ~~~~~------~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      +.-..      .....++..+.-..+.++.++-..+.+.+..+...
T Consensus       834 ~~f~~~~~~~~~~~~~~~~~~~~a~~h~~r~~~~~~l~~~~~ll~~  879 (1023)
T 4hat_C          834 KSFAAFLELPPAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKN  879 (1023)
T ss_dssp             HCTHHHHTSCHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HChHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence            64332      22345666666667778888877777777665543

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.30  E-value=2.6e-11  Score=106.67  Aligned_cols=254  Identities=13%  Similarity=0.105  Sum_probs=165.6

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  155 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  155 (382)
                      +...+..-+-|+.|++|..|+-+|..+.+..+...-.  .      -..+.+-.+|-.++-++..++.            
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR--~------~~~N~DLAvRLLCVLALDRFGD------------  234 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDI--Q------IRVDSKLFSKIYEILVTDKFND------------  234 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----C--C------CCCCTTHHHHHHHHHHHBCCBB------------
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCce--e------ccccHHHHHHHHHHHHhccccc------------
Confidence            6667777778889999999999999998877653111  1      1112233344444444333332            


Q ss_pred             HHHHHhhcCC-ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814          156 PIFLSLLKDE-FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  234 (382)
Q Consensus       156 ~~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  234 (382)
                           .++|. ...||+.+++.++.+ ..++.+   ..++-.+...+..+.|.+|..++-.+..+...+..   .+.+++
T Consensus       235 -----YVSDqVVAPVRETaAQtLGaL-~hLp~e---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~  302 (800)
T 3oc3_A          235 -----FVDDRTVAPVRDAAAYLLSRI-YPLIGP---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCR  302 (800)
T ss_dssp             -----CSSSSCBCHHHHHHHHHHHHH-TTTSCS---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHH
T ss_pred             -----cccCeeeeehHHHHHHHHHHH-HhCChh---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHH
Confidence                 33443 478999999999999 777765   23444444455888999999999999888333332   578899


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLP  312 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  312 (382)
                      .+...|.|.+..||..|+.++..++   .++. ...++..+.+.+.+-+  ..---.....++.+...-......+.++|
T Consensus       303 aVL~GL~D~DDDVRAVAAetLiPIA---~p~~-l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVP  378 (800)
T 3oc3_A          303 KLVSLLSSPDEDIKLLSAELLCHFP---ITDS-LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLK  378 (800)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHTTSC---CSST-HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGG
T ss_pred             HHHhhcCCcccHHHHHHHHHhhhhc---chhh-HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHH
Confidence            9999999999999999999999888   2221 2335555555544321  11112233444444322111112248999


Q ss_pred             HHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHH-hcCCCCccHHhHHHHHHH
Q 016814          313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ  373 (382)
Q Consensus       313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~-l~~d~~~~vr~~a~~al~  373 (382)
                      .+..++.++.+.||.++++++..+.        ...+++.+-+ ++-+++.+|+..+.++..
T Consensus       379 RL~PFLRHtITSVR~AVL~TL~tfL--------~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          379 DIFPCFTSPVPEVRTSILNMVKNLS--------EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             GTGGGGTCSSHHHHHHHHHHTTTCC--------CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             HHHhhhcCCcHHHHHHHHHHHHHHH--------hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            9999999999999999999998876        1233333333 566888899888777653

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=99.29  E-value=1.1e-08  Score=101.17  Aligned_cols=365  Identities=12%  Similarity=0.055  Sum_probs=226.1

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---ccc--------------
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPT--------------   72 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~--------------   72 (382)
                      ++.+|...+.++..++...-+ ..|+.+++-+.+.++. ++......+..+..+.+.+..   +..              
T Consensus       113 ~~~i~nKLa~~la~I~~~~~p-~~Wp~~l~dL~~~l~~-~~~~~~~~L~iL~~L~EEV~~~~~~~l~~~r~~~lk~~l~~  190 (1023)
T 4hat_C          113 QKNLINKSDLTLVQILKQEWP-QNWPEFIPELIGSSSS-SVNVCENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSK  190 (1023)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT-TTCTTHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHhCh-hhchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence            366777888888888886544 3488888888888764 345677778888887776432   110              


Q ss_pred             -ccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCHHHH-HHhhhHhhh-hhcCCCchHHHHHHHHHHHhhcc-cc-C
Q 016814           73 -RMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNPELA-IQHILPCVK-ELSSDSSQHVRSALASVIMGMAP-LL-G  146 (382)
Q Consensus        73 -~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~~~~-~~~il~~l~-~~~~d~~~~vr~~a~~~l~~l~~-~~-~  146 (382)
                       .+.+++.+.+.+.+ .++.+...++++++.+...++.+.+ .+.+++.+. .++.  ++..|..++.++..+.. .. +
T Consensus       191 ~~~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~eIv~~~~~~  268 (1023)
T 4hat_C          191 EFEQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIPYRYIYETNILELLSTKFMT--SPDTRAITLKCLTEVSNLKIPQ  268 (1023)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHHHHTSCCCS
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCCHHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHHHHccccCC
Confidence             11245555555543 4577889999999999988776633 345777777 6664  46799999999999875 22 2


Q ss_pred             hH-hHHH-------hhHHHH-HHh-------------hcCCChHHHHHHHHhhHHhhhhhch-----hhH---hhhHHHH
Q 016814          147 KD-ATIE-------QLLPIF-LSL-------------LKDEFPDVRLNIISKLDQVNQVIGI-----DLL---SQSLLPA  196 (382)
Q Consensus       147 ~~-~~~~-------~l~~~l-~~~-------------l~d~~~~vr~~~~~~l~~~~~~~~~-----~~~---~~~llp~  196 (382)
                      +. ...+       .+++.+ ..+             ..+++.+.....+..+..+++....     +.+   ....+..
T Consensus       269 ~~~~~~~~l~~lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~~~l~~  348 (1023)
T 4hat_C          269 DNDLIKRQTVLFFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQY  348 (1023)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence            21 1111       222222 111             1223455555555555554443221     111   1222335


Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhhhc-----hhhh---HHHHHHHHHHHhccch---------------------hHH
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQLG-----VGFF---DDKLGALCMQWLQDKV---------------------YSI  247 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~-----~~~~---~~~l~~~l~~~l~d~~---------------------~~v  247 (382)
                      +..+...+++.+-..+++.-..+.+.+-     ...+   ...+.+.+..-+.-|.                     ...
T Consensus       349 Ll~~~~~~d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~~~~~~e~~~d~d~~~  428 (1023)
T 4hat_C          349 LIQLSKIEERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDEGEIVREFVKESDTIQ  428 (1023)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTTSCEEECSSCCGGGHH
T ss_pred             HHHhhCCCcHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCccHHHHhccchHHHH
Confidence            5555566777775666666555554321     1122   2345555554433211                     111


Q ss_pred             HHHHH-HHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhcc--
Q 016814          248 RDAAA-NNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASK--  319 (382)
Q Consensus       248 r~~a~-~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~--  319 (382)
                      .-... ..+..+.. +..+.....+++.+.+.+.+  .+|+.|++++.+++.++..+..+   .+...++|.++.++.  
T Consensus       429 ~f~~~Rd~L~~l~~-l~~~~~~~~~~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~  507 (1023)
T 4hat_C          429 LYKSEREVLVYLTH-LNVIDTEEIMISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKK  507 (1023)
T ss_dssp             HHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhcc
Confidence            11111 34433333 34445556677777666654  57999999999999999887753   567888998888876  


Q ss_pred             ---CCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814          320 ---DRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       320 ---d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                         |+...||..++.++|.....+.. ..+...++..+.+.+.|+++.|...|+.|+..++.--
T Consensus       508 ~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~~vl~~L~~~l~~~~~~v~~~A~~al~~l~~~c  571 (1023)
T 4hat_C          508 RGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVILKLFEFMHETHEGVQDMACDTFIKIVQKC  571 (1023)
T ss_dssp             CSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHH
Confidence               45566889999999998877652 2345556666666677888999999999999988753

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=99.28  E-value=9.9e-10  Score=90.07  Aligned_cols=178  Identities=15%  Similarity=0.112  Sum_probs=136.6

Q ss_pred             HhhcCCChHHHHHHHHhhHHhhhhhchhhHhhh---HHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---h--h-HH
Q 016814          160 SLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQS---LLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---F--F-DD  230 (382)
Q Consensus       160 ~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~---llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~--~-~~  230 (382)
                      ..+-+.+...|..++..+....+... +.....   +++-+.--+.|.|..+-..+++.+..+...++..   .  . ..
T Consensus        53 ~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea~  131 (266)
T 2of3_A           53 SQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEVS  131 (266)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHH
Confidence            33444567777777777666544322 222121   2333332334889999999999999887766432   1  1 25


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL  310 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~  310 (382)
                      .++|.+..-+.|+...||+.+-..+..+...+++    ..+++.+.+.++++||++|+.++..+..+.+.+|..  ....
T Consensus       132 ~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~--~~~~  205 (266)
T 2of3_A          132 AFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS--PLKS  205 (266)
T ss_dssp             HHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG--GGGG
T ss_pred             HHHHHHHHHhCCChHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC--cccc
Confidence            7899999999999999999999999888887765    347788888999999999999999999999999976  2457


Q ss_pred             H---HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH
Q 016814          311 L---PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM  344 (382)
Q Consensus       311 l---~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~  344 (382)
                      +   |.+.+++.|++..||.+|+.++..++...|...
T Consensus       206 l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v  242 (266)
T 2of3_A          206 LSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQM  242 (266)
T ss_dssp             GCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHH
T ss_pred             ccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH
Confidence            7   999999999999999999999999999988763

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=99.27  E-value=1e-10  Score=100.56  Aligned_cols=285  Identities=12%  Similarity=0.041  Sum_probs=162.6

Q ss_pred             hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHh
Q 016814           35 AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH  114 (382)
Q Consensus        35 ~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~  114 (382)
                      ..+.+-+.++.+.+|...|+.+.-.+..+++. .++..  -+...+.+-++|+++.+|-.|+.+++.+...    ...+.
T Consensus        67 t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~-~~e~i--Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~~----~m~~~  139 (355)
T 3tjz_B           67 TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI-AEDVI--IVTSSLTKDMTGKEDSYRGPAVRALCQITDS----TMLQA  139 (355)
T ss_dssp             HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT-SSCGG--GGHHHHHHHHHSSCHHHHHHHHHHHHHHCCT----TTHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC-HHHHH--HHHHHHHhhcCCCcHhHHHHHHHHHhcCCCH----HHHHH
Confidence            34666677899999999999999999888765 33322  5788889999999999999999999987542    23457


Q ss_pred             hhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814          115 ILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  194 (382)
Q Consensus       115 il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll  194 (382)
                      +.+.+.+.+.|.++.||..|+-+...+....+ + ..+.+++.+.+++.|.++.|...++..+..+... +...+ ..++
T Consensus       140 l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~p-e-~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~-d~~a~-~kLv  215 (355)
T 3tjz_B          140 IERYMKQAIVDKVPSVSSSALVSSLHLLKCSF-D-VVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKN-DRLAV-SKMI  215 (355)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCH-H-HHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTT-CHHHH-HHHH
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCH-H-HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhh-chHHH-HHHH
Confidence            78999999999999999999999998886543 3 3457889999999999999998888888777643 22122 3444


Q ss_pred             HHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHH
Q 016814          195 PAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQ  274 (382)
Q Consensus       195 p~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~  274 (382)
                      +.+... .-.++-....+++.+..+...- .......+++.+...+++.+..|...|++++-.+.. .+.. ......+.
T Consensus       216 ~~l~~~-~l~~~~~q~~llr~l~~~~~~d-~~~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~-~~~~-~~~~a~~~  291 (355)
T 3tjz_B          216 SKFTRH-GLKSPFAYCMMIRVASRQLEDE-DGSRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPG-CSAK-ELAPAVSV  291 (355)
T ss_dssp             HHHHSS-CCSCHHHHHHHHHHHTCC------------------CCCCCSSHHHHHHHHHHHTC-------------CCCT
T ss_pred             HHHhcC-CCcChHHHHHHHHHHHHhcccc-chhhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccC-CCHH-HHHHHHHH
Confidence            444321 1112322333444443333211 012345788889999999999999999999888654 2222 22334556


Q ss_pred             HHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHH
Q 016814          275 VLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSL  336 (382)
Q Consensus       275 l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i  336 (382)
                      +..++.+++..+|-.|+..+..+....+.  .....-..+..+++|++..++.-|+.+|-+.
T Consensus       292 L~~fLss~d~niryvaLr~L~~l~~~~P~--~v~~~n~~ie~li~d~n~sI~t~Aittllkt  351 (355)
T 3tjz_B          292 LQLFCSSPKAALRYAAVRTLNKVAMKHPS--AVTACNLDLENLVTDANRSIATLAITTLLKT  351 (355)
T ss_dssp             HHHHHHSSSSSSHHHHHHCC------------------------------------------
T ss_pred             HHHHHcCCCchHHHHHHHHHHHHHHHCcH--HHHHHHHHHHHHccCCcHhHHHHHHHHhhhc
Confidence            66677788889999999999998875543  3445556778899999999999998887654

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.27  E-value=1.2e-09  Score=92.40  Aligned_cols=171  Identities=14%  Similarity=0.119  Sum_probs=132.4

Q ss_pred             HHHHHHHHHHHHHHHHhCC--cccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcC
Q 016814           51 RVRYMVANQLYELCEAVGP--EPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSS  124 (382)
Q Consensus        51 ~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~  124 (382)
                      .-|..++..|..+++....  .......+|.++. ++.++++.||..|+++|++++..-+   ...+....+|.|..+++
T Consensus        55 e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~  134 (296)
T 1xqr_A           55 QEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD  134 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHc
Confidence            4677777777777754332  1222357899999 9999999999999999999976422   22334468899999887


Q ss_pred             -CCchHHHHHHHHHHHhhccccCh--HhH-HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh----hHhhhHHHH
Q 016814          125 -DSSQHVRSALASVIMGMAPLLGK--DAT-IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPA  196 (382)
Q Consensus       125 -d~~~~vr~~a~~~l~~l~~~~~~--~~~-~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~  196 (382)
                       +++..+|..++++|+.++...+.  +.+ ....+|.+..++++.++.++..++.++..++.. +.+    .....++|.
T Consensus       135 ~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~  213 (296)
T 1xqr_A          135 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQ  213 (296)
T ss_dssp             HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHH
Confidence             56889999999999999864432  222 246889999999999999999999999998765 222    123468899


Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                      +..++.+++..+|..++..+..++..
T Consensus       214 Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          214 LVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            99999999999999999999999865

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=99.26  E-value=2.2e-10  Score=97.05  Aligned_cols=185  Identities=11%  Similarity=0.066  Sum_probs=134.0

Q ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH-------HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH-
Q 016814           77 VPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA-------IQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD-  148 (382)
Q Consensus        77 l~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~-------~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~-  148 (382)
                      +| +.+.+.+.+|..|..|++.+..+......+..       ...+.+.+...+.|.+..|...++.++..++...+.. 
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            55 55777888899999988888887765433211       1234566777888999999999999998887765532 


Q ss_pred             -------hHHHhhHHHHHH-hhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          149 -------ATIEQLLPIFLS-LLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       149 -------~~~~~l~~~l~~-~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                             .....++|.+.+ .+.|..+.+|..+..++..++...+..   ..+++.+...+++++|++|..++..+..+.
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~---~~~~e~l~~~l~~Knpkv~~~~l~~l~~~l  167 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI---TQSVELVIPFFEKKLPKLIAAAANCVYELM  167 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS---HHHHHHHGGGGGCSCHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH---HHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence                   123456666654 578888999999888887776554321   345667777889999999999999999999


Q ss_pred             hhhchhhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH
Q 016814          221 SQLGVGFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE  265 (382)
Q Consensus       221 ~~~~~~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~  265 (382)
                      ..+|....     .+.+++.+..++.|.+..||.+|...++.+...+|..
T Consensus       168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~  217 (278)
T 4ffb_C          168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNN  217 (278)
T ss_dssp             HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC----
T ss_pred             HHhCCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCcc
Confidence            88875432     3456677788899999999999999999998888753

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.22  E-value=4.4e-09  Score=82.36  Aligned_cols=221  Identities=13%  Similarity=0.115  Sum_probs=168.1

Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc----hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--h
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG----IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V  225 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~----~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~  225 (382)
                      +..+..+.+++.|.++.++.+++..+..+.+..+    ...+ +.++|.+..++++++.++-..+++++..+....+  +
T Consensus        32 e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~  110 (265)
T 3b2a_A           32 KRALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGS  110 (265)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCH
T ss_pred             hhHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCH
Confidence            3466778888899999999999999998887642    2233 7888999999999999999999999999988764  3


Q ss_pred             hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh
Q 016814          226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI  305 (382)
Q Consensus       226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~  305 (382)
                      +.| ..+...+....++++.-.+..++..++.+ +..   .....+...+.+++.+++.+++.+++.++..++...+...
T Consensus       111 ~~y-~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv~---~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~  185 (265)
T 3b2a_A          111 KTF-LKAAKTLVSLLESPDDMMRIETIDVLSKL-QPL---EDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSG  185 (265)
T ss_dssp             HHH-HHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CBS---CCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCC
T ss_pred             HHH-HHHHHHHHHHhcCCCchHHHHHHHHhCcC-Ccc---cchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHH
Confidence            433 36788888888999999999999999887 222   1234577788888888899999999999999887766555


Q ss_pred             hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhc-CCCCccHHhHHHHHHHHHHHH
Q 016814          306 TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELT-EDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       306 ~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~-~d~~~~vr~~a~~al~~~~~~  378 (382)
                      ..+.++..+-.+++++++.++..|+.++..+...--.+   .-...+.....++. -...+.+|..|-.....+-.+
T Consensus       186 i~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~~le~~  262 (265)
T 3b2a_A          186 HLTLILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSDLIDSV  262 (265)
T ss_dssp             CGGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHh
Confidence            67777778888888889999999999999887642211   11245555666666 667788888887766655444

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=99.21  E-value=1.4e-09  Score=85.14  Aligned_cols=182  Identities=13%  Similarity=0.046  Sum_probs=117.0

Q ss_pred             chHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-HhH
Q 016814           75 DLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-DAT  150 (382)
Q Consensus        75 ~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-~~~  150 (382)
                      ..+..+.++++|.++.|+..++.+++.+.+..+..   ...+.++|.+.+++.+++..|--.|.++++.+....+. +..
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            35777777888888888888888888888876443   34556777788788888888877888887777655542 223


Q ss_pred             HHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHH
Q 016814          151 IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDD  230 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  230 (382)
                      ...+...+...++++++-++..++..++.+ +.   ......+...+..++.+++.+++..++..+-.++..-+.....+
T Consensus       113 y~Kl~~aL~dlik~~~~il~~eaae~Lgkl-kv---~~~~~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S~D~~i~~  188 (265)
T 3b2a_A          113 FLKAAKTLVSLLESPDDMMRIETIDVLSKL-QP---LEDSKLVRTYINELVVSPDLYTKVAGFCLFLNMLNSSADSGHLT  188 (265)
T ss_dssp             HHHHHHHHHHHTTSCCHHHHHHHHHHHHHC-CB---SCCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGCSSCCCGG
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHhCcC-Cc---ccchHHHHHHHHHHHhCCChhHHHHHHHHHHHhhcccCCHHHHH
Confidence            456667777777777777777777777766 21   11124455556666666666777666666666655443222222


Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                      .++.-+..+++.+++.+++.|+.++..+..
T Consensus       189 ~I~~eI~elL~~eD~~l~e~aLd~Le~ils  218 (265)
T 3b2a_A          189 LILDEIPSLLQNDNEFIVELALDVLEKALS  218 (265)
T ss_dssp             GTTTTHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHc
Confidence            344444555666666666666666666554

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.20  E-value=2.1e-09  Score=90.97  Aligned_cols=145  Identities=10%  Similarity=0.016  Sum_probs=62.0

Q ss_pred             HHHHHH-HhcCCCchHHHHHHHHhHHHHhhhc---hhhhHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChH--H
Q 016814          194 LPAIVE-LAEDRHWRVRLAIIEYIPLLASQLG---VGFFDDKLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPE--W  266 (382)
Q Consensus       194 lp~l~~-~~~d~~~~vr~~~~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~--~  266 (382)
                      +|.+.. ++.+++..+|..++.+++.++..-.   ........+|.+..++.+ ++..+|..|+.+++.++....+.  .
T Consensus        83 l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~  162 (296)
T 1xqr_A           83 MHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQ  162 (296)
T ss_dssp             HHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            444444 4455555555555555555443211   111112344444444442 34445555555555444322210  1


Q ss_pred             -HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          267 -AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       267 -~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                       .....+|.+..++.+++..+|..|+++++.++......   .....++|.+..++.++++.+|..++.+|+.+..
T Consensus       163 ~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          163 FLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHh
Confidence             11234444445554444555555555555544331110   1223344445555554444555555555554443

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.10  E-value=9.7e-12  Score=92.50  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhh
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS  308 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~  308 (382)
                      .+.-.+.+...++|+++.+|..|+..++.+    |..     -++.+.+.+.|+++.+|..++.+++.+..        .
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~----~~~-----~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~   72 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRM----GDE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQD--------E   72 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSC----SST-----THHHHHHGGGCSCHHHHHHHHHHHGGGCS--------H
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHh----Cch-----HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------H
Confidence            345566777788888888888888887654    222     14777888888888899888888877652        2


Q ss_pred             hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHH
Q 016814          309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQS  374 (382)
Q Consensus       309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~  374 (382)
                      ..+|.+...++|+++.||..++.+|+.+..        ...+|.|.++++|+++.||..|..+++.
T Consensus        73 ~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           73 RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            456777788888888899999998888752        3456777787888888899888888764

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.09  E-value=1.2e-09  Score=86.58  Aligned_cols=139  Identities=17%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH-hcCCCcHHHHHHHHHHHHHHHHhhCHHHHH
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR-LLRDNEAEVRIAAAGKVTKFCRILNPELAI  112 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~  112 (382)
                      .+.++++...+.+++...||..++..|+.. .      ....+++.+.. +..|++|.||+.+..+++.++...+++   
T Consensus        69 ~~~~~~la~~L~~~~~deVR~~Av~lLg~~-~------~~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe---  138 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVYQVRMYAVFLFGYL-S------KDKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK---  138 (240)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHT-T------TSHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT---
T ss_pred             HHHHHHHHHHHHhCcchHHHHHHHHHHHhc-c------CcHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH---
Confidence            345666666777777777777777766655 1      11446777766 666777777777777777776644443   


Q ss_pred             HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                       ..++.+...++|++..||..++.....++.........+.++|++..+..|++..||+++..+|..+.+.
T Consensus       139 -~~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~  208 (240)
T 3l9t_A          139 -KALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKK  208 (240)
T ss_dssp             -TTHHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhh
Confidence             3456667777777777777777765544433222223356677777777777777777777777776654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=99.07  E-value=3.1e-11  Score=89.77  Aligned_cols=84  Identities=24%  Similarity=0.268  Sum_probs=35.2

Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHH
Q 016814          117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPA  196 (382)
Q Consensus       117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~  196 (382)
                      +.+.++++|+++.||..++.+++.+..        +..++.+.+.++|+++.||..++.+++.+..        ...+|.
T Consensus        45 ~~L~~~L~d~~~~vR~~A~~aL~~~~~--------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~--------~~a~~~  108 (131)
T 1te4_A           45 EPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG--------ERVRAA  108 (131)
T ss_dssp             HHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--------HHHHHH
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCC--------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--------HHHHHH
Confidence            334444444444444444444444431        1223333344444444444444444444321        223344


Q ss_pred             HHHHhcCCCchHHHHHHHHh
Q 016814          197 IVELAEDRHWRVRLAIIEYI  216 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l  216 (382)
                      +..+++|+++.||..+...|
T Consensus       109 L~~~l~d~~~~vr~~A~~aL  128 (131)
T 1te4_A          109 MEKLAETGTGFARKVAVNYL  128 (131)
T ss_dssp             HHHHTTSCCTHHHHHHHHHG
T ss_pred             HHHHHhCCCHHHHHHHHHHH
Confidence            44444444444444444443

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=99.03  E-value=8e-10  Score=87.48  Aligned_cols=133  Identities=20%  Similarity=0.260  Sum_probs=108.1

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhh-hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVN-FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY   80 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~-~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l   80 (382)
                      ++.|.+|+..+||..|+..++.. .   .   ...+++.+.+ ...|++|.||+.++..++.++...+++.    .++.+
T Consensus        76 a~~L~~~~~deVR~~Av~lLg~~-~---~---~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----~l~~~  144 (240)
T 3l9t_A           76 AFLAYQSDVYQVRMYAVFLFGYL-S---K---DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----ALPII  144 (240)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHT-T---T---SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT----THHHH
T ss_pred             HHHHHhCcchHHHHHHHHHHHhc-c---C---cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH----HHHHH
Confidence            56788999999999999988877 3   1   2568899887 7789999999999999999997555543    58888


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  145 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  145 (382)
                      ...+.|++..||..|++.....+.........+.++|.+..+..|++..||.+...+|..+.+.-
T Consensus       145 ~~W~~d~n~~VRR~Ase~~rpW~~~~~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          145 DEWLKSSNLHTRRAATEGLRIWTNRPYFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             HHHHHCSSHHHHHHHHHHTCSGGGSTTTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCCHHHHHHHHHhhHHHhccchhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence            99999999999999998875544331111223468899999999999999999999999998743

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=99.01  E-value=2.5e-06  Score=84.36  Aligned_cols=365  Identities=13%  Similarity=0.062  Sum_probs=214.1

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-----------------
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----------------   71 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----------------   71 (382)
                      .++.++...+.++..+++..-++ .|+.+++-+.+..+. ++..+...+..|..+.+.+....                 
T Consensus       124 ~~~~vinKLa~~La~I~k~~~P~-~Wp~fi~dLv~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~  201 (1073)
T 3gjx_A          124 KEKVYIGKLNMILVQILKQEWPK-HWPTFISDIVGASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMC  201 (1073)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTT-TCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHhChh-hccHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHH
Confidence            35677888888899888864442 377788777777653 34667778888888887754310                 


Q ss_pred             -cccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH-HhhhHhh-hhhcCCCchHHHHHHHHHHHhhccc-cC
Q 016814           72 -TRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI-QHILPCV-KELSSDSSQHVRSALASVIMGMAPL-LG  146 (382)
Q Consensus        72 -~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~-~~il~~l-~~~~~d~~~~vr~~a~~~l~~l~~~-~~  146 (382)
                       ..+.+++.+.+.+. ..++.+...++++++.+...++.+.+. +.+++.+ ...+.  ++..|..++.++..+... .+
T Consensus       202 ~~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~i~~i~~~~ll~~L~~~~L~--~~~~r~aA~dcL~eIv~k~~~  279 (1073)
T 3gjx_A          202 NEFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIPLGYIFETKLISTLIYKFLN--VPMFRNVSLKCLTEIAGVSVS  279 (1073)
T ss_dssp             HTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSCTHHHHSSSHHHHHHHHTSS--SHHHHHHHHHHHHHHHHSCSG
T ss_pred             HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcCHHHhccchHHHHHHHHhcC--ChHHHHHHHHHHHHHHhcccc
Confidence             01235555555553 356888899999999999988776443 4577766 46664  567999999999998753 22


Q ss_pred             h-HhHH----HhhHHHHHHhh-------------cCCChHHHHHHHHhhHHhhhhhch-----hhHhhhH---HHHHHHH
Q 016814          147 K-DATI----EQLLPIFLSLL-------------KDEFPDVRLNIISKLDQVNQVIGI-----DLLSQSL---LPAIVEL  200 (382)
Q Consensus       147 ~-~~~~----~~l~~~l~~~l-------------~d~~~~vr~~~~~~l~~~~~~~~~-----~~~~~~l---lp~l~~~  200 (382)
                      . +...    +.++..+..++             .+++.+.-.+.+..+..+++....     ..+.+.+   +..+..+
T Consensus       280 ~~~~~~~~lf~~~~~~i~~ilp~~~~l~~~y~~~~~~d~e~~~~l~~~f~~~~e~~~~lIe~~p~~~~~l~~~l~~ll~~  359 (1073)
T 3gjx_A          280 QYEEQFETLFTLTMMQLKQMLPLNTNIRLAYSNGKDDEQNFIQNLSLFLCTFLKEHGQLLEKRLNLREALMEALHYMLLV  359 (1073)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHSCTTSCHHHHHHTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHhcCCchhHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            1 1111    11121122222             112223333333333333332211     0111222   3334455


Q ss_pred             hcCCCchHHHHHHHHhHHHHhhhch------------------------hhhH---HHHHHHHHHHhccc----------
Q 016814          201 AEDRHWRVRLAIIEYIPLLASQLGV------------------------GFFD---DKLGALCMQWLQDK----------  243 (382)
Q Consensus       201 ~~d~~~~vr~~~~~~l~~l~~~~~~------------------------~~~~---~~l~~~l~~~l~d~----------  243 (382)
                      ...++..+-.-+...-..+...+-.                        ..+.   ..+...+..-+.-|          
T Consensus       360 s~~~d~ei~kitf~fW~~L~~~L~~e~~~~~~~~~~~~~~~~~~~~~~~~~y~~i~~~L~~vlI~~m~~P~ev~i~e~e~  439 (1073)
T 3gjx_A          360 SEVEETEIFKICLEYWNHLAAELYRESPFSTSASPLLSGSQHFDIPPRRQLYLTVLSKVRLLMVSRMAKPEEVLVVENDQ  439 (1073)
T ss_dssp             TTCSCHHHHHHHHHHHHHHHHHHHHHCCSCCCCSSCTTSSCCSCSCHHHHTTHHHHHHHHHHHHHTCCCSCCEEEEECSS
T ss_pred             hCCCcHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhHHHHHHHHHHHHHHHHHHhcCCCccccccCccc
Confidence            5566666655555554444332210                        0111   12233333222211          


Q ss_pred             -----------hh-HHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC--cchHHHHHHHHHHHHhccccChh---hh
Q 016814          244 -----------VY-SIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN--PHYLYRMTILRAISLLAPVMGSE---IT  306 (382)
Q Consensus       244 -----------~~-~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~--~~~~~r~~a~~~l~~l~~~~~~~---~~  306 (382)
                                 +. ..+...-.++.. ...++++.....+++.+.+.+..  .+|..+++++++++.++..+..+   .+
T Consensus       440 ge~~re~~~d~~~~~ly~~mrd~L~~-lt~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~  518 (1073)
T 3gjx_A          440 GEVVREFMKDTDSINLYKNMRETLVY-LTHLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRF  518 (1073)
T ss_dssp             SCEEEEECSSCHHHHHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHH
T ss_pred             chHHHHHHhhcchHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccch
Confidence                       10 122222233333 33456665556667776665543  46999999999999998776642   56


Q ss_pred             hhhhHHHHHhhccCC-----CccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          307 CSRLLPVVINASKDR-----VPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       307 ~~~~l~~l~~~l~d~-----~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      ...+++.++.+...+     .+.++...+..+|.....+.. ..+...++..+.+...|+++.|+..|+.|+..++.-
T Consensus       519 Lp~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~  596 (1073)
T 3gjx_A          519 LVTVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQK  596 (1073)
T ss_dssp             HHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            778888888777544     234777777888877665542 235566666666777899999999999999988764

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=99.00  E-value=2e-08  Score=88.87  Aligned_cols=232  Identities=15%  Similarity=0.106  Sum_probs=161.0

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChh-----hh-hhhhhhh--------hhhhccCCC-HHHHHHHHHHHHHHHHHhCCc
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQ-----DC-VAHILPV--------IVNFSQDKS-WRVRYMVANQLYELCEAVGPE   70 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~-----~~-~~~ll~~--------l~~~~~d~~-~~vR~~a~~~l~~l~~~~~~~   70 (382)
                      +-|+..++|+.|+-++..+.+..+..     .. .+....+        +-....|.- .-||+.+++.|+.+ ..++++
T Consensus       183 LFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL-~hLp~e  261 (800)
T 3oc3_A          183 LLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI-YPLIGP  261 (800)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-TTTSCS
T ss_pred             hcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-HhCChh
Confidence            34778999999999999999876531     00 0111111        112345543 57999999999999 777776


Q ss_pred             ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhH
Q 016814           71 PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDAT  150 (382)
Q Consensus        71 ~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~  150 (382)
                         ..++..++..+..+.|+||..++-.+..+...+..   .+.+++.+...++|.+..||..|+.++..++   .+ ..
T Consensus       262 ---~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~DLL~~---Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPIA---~p-~~  331 (800)
T 3oc3_A          262 ---NDIIEQLVGFLDSGDWQVQFSGLIALGYLKEFVED---KDGLCRKLVSLLSSPDEDIKLLSAELLCHFP---IT-DS  331 (800)
T ss_dssp             ---CCHHHHHTTGGGCSCHHHHHHHHHHHHHTGGGCCC---HHHHHHHHHHHTTCSSHHHHHHHHHHHTTSC---CS-ST
T ss_pred             ---HHHHHHHHhhcCCCCeeehhhhHHHHHHHHHHHHH---HHHHHHHHHhhcCCcccHHHHHHHHHhhhhc---ch-hh
Confidence               35666666677888999999999999988443332   5678899999999999999999999999998   21 22


Q ss_pred             HHhhHHHHHHhhcCC--ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh
Q 016814          151 IEQLLPIFLSLLKDE--FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF  228 (382)
Q Consensus       151 ~~~l~~~l~~~l~d~--~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~  228 (382)
                      .+.++..+.+.+.+-  -..........++.++..-......+.++|.+..++.+.-..||.++++.+..+.        
T Consensus       332 l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--------  403 (800)
T 3oc3_A          332 LDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPELSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--------  403 (800)
T ss_dssp             HHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTTCCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--------
T ss_pred             HHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcccccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--------
Confidence            455666666655442  2233334444445544432111111478888888899999999999999998776        


Q ss_pred             HHHHHHH-HHHHhccchhHHHHHHHHHHH
Q 016814          229 DDKLGAL-CMQWLQDKVYSIRDAAANNLK  256 (382)
Q Consensus       229 ~~~l~~~-l~~~l~d~~~~vr~~a~~~l~  256 (382)
                      ...++.. +++.+-+++.+|++.+.+.+.
T Consensus       404 ~~~~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          404 EESIDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             CHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            1233333 456778899999999999885

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.89  E-value=1.4e-06  Score=88.43  Aligned_cols=366  Identities=13%  Similarity=0.037  Sum_probs=211.2

Q ss_pred             CchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccc----------------
Q 016814            9 DQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT----------------   72 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~----------------   72 (382)
                      ..+.||...+.++..+++.--+ ..|+.+++.+.+.++. ++..+..++..|..+++.......                
T Consensus       108 ~~~~vr~kla~~la~Ia~~d~p-~~Wp~ll~~L~~~~~~-~~~~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~  185 (1204)
T 3a6p_A          108 EENHIKDALSRIVVEMIKREWP-QHWPDMLIELDTLSKQ-GETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQN  185 (1204)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHST-TTCTTHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence            5689999999999999987544 4588999988888765 556788899999999875322100                


Q ss_pred             ccchHHHHHHhcCC-------------------CcHHHHHHHHHHHHHHHHhhCHHHHHH---hhhHhhhhhcCCCchHH
Q 016814           73 RMDLVPAYVRLLRD-------------------NEAEVRIAAAGKVTKFCRILNPELAIQ---HILPCVKELSSDSSQHV  130 (382)
Q Consensus        73 ~~~ll~~l~~~l~d-------------------~~~~VR~~a~~~l~~l~~~~~~~~~~~---~il~~l~~~~~d~~~~v  130 (382)
                      ...+++.+.+.+.+                   ++..++..+++++.++....+...+.+   .+++.+..++.+  +.+
T Consensus       186 ~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~l  263 (1204)
T 3a6p_A          186 MERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QEL  263 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTT
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHH
Confidence            01344555544433                   234578888888888777666654433   377777777764  678


Q ss_pred             HHHHHHHHHhhccccC-hHh---HHHhh----HHHHHHhh--------cCCChHHHHHHHHhhHHhhhhhc---------
Q 016814          131 RSALASVIMGMAPLLG-KDA---TIEQL----LPIFLSLL--------KDEFPDVRLNIISKLDQVNQVIG---------  185 (382)
Q Consensus       131 r~~a~~~l~~l~~~~~-~~~---~~~~l----~~~l~~~l--------~d~~~~vr~~~~~~l~~~~~~~~---------  185 (382)
                      |..|+.+|..++..-. .+.   ....+    +..+....        .+++.++++..++.+..++..+-         
T Consensus       264 r~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~  343 (1204)
T 3a6p_A          264 QLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDV  343 (1204)
T ss_dssp             HHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred             HHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999986432 221   11111    11122222        22234555555555544432211         


Q ss_pred             --hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhc--h-h---hhHHHHHHHHHH---Hhc-------------
Q 016814          186 --IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLG--V-G---FFDDKLGALCMQ---WLQ-------------  241 (382)
Q Consensus       186 --~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~--~-~---~~~~~l~~~l~~---~l~-------------  241 (382)
                        ...+ ..+++.+..+..+++..+-..++.....+.+...  . .   .+...+++.+..   -+.             
T Consensus       344 ~~~~~l-~~~l~~lL~~t~~~~~~vs~~~l~fW~~ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~  422 (1204)
T 3a6p_A          344 ETPSNF-GKYLESFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYS  422 (1204)
T ss_dssp             CCCTTH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHH
T ss_pred             cChhHH-HHHHHHHHHHHhCccHHhHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhh
Confidence              1122 5788889888888877776666666665554431  1 1   123445555521   110             


Q ss_pred             ----cc-------hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-------------------------CcchH
Q 016814          242 ----DK-------VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-------------------------NPHYL  285 (382)
Q Consensus       242 ----d~-------~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-------------------------~~~~~  285 (382)
                          |.       -++-|......+..++... ++.....+.+.+.+.+.                         ++.|.
T Consensus       423 ~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~-p~~~l~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~  501 (1204)
T 3a6p_A          423 RFDFDSDEDFNAFFNSSRAQQGEVMRLACRLD-PKTSFQMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFV  501 (1204)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHTCC-----------------CCSCSSSHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHH
Confidence                00       1234666666666665543 22222333344433222                         23456


Q ss_pred             HHHHHHHHHHHhccccC----hhhhhhhhHHHHHhhc---cCCCccHHHHHHHHHHHHhhhhhH-HHHHHhHHHHHHHhc
Q 016814          286 YRMTILRAISLLAPVMG----SEITCSRLLPVVINAS---KDRVPNIKFNVAKVLQSLIPIVDQ-SMVEKTIRPCLVELT  357 (382)
Q Consensus       286 ~r~~a~~~l~~l~~~~~----~~~~~~~~l~~l~~~l---~d~~~~vR~~a~~~l~~i~~~~~~-~~~~~~i~~~l~~l~  357 (382)
                      ..++...++..+.+.+.    .+.....++|.++..+   ...+|.+|...+..++.+...+.. +.+...++..+...+
T Consensus       502 ~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l  581 (1204)
T 3a6p_A          502 QWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQMVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSV  581 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhh
Confidence            66776666666554441    1111112445555542   345688999999999888776652 123344444444333


Q ss_pred             CC------------CCccHHhHHHHHHHHHHHHhc
Q 016814          358 ED------------PDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       358 ~d------------~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .+            ...+||..|+.++..++...+
T Consensus       582 ~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~  616 (1204)
T 3a6p_A          582 TFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP  616 (1204)
T ss_dssp             HCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh
Confidence            33            234799999999998887654

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=98.84  E-value=5.4e-06  Score=81.98  Aligned_cols=357  Identities=12%  Similarity=0.113  Sum_probs=204.9

Q ss_pred             HHHHHHHhccChhhhhhhhhhhhhhhcc--CCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHHHHhcCCC-----c
Q 016814           19 EGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAYVRLLRDN-----E   88 (382)
Q Consensus        19 ~~l~~l~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~l~d~-----~   88 (382)
                      +++..+ .+++++.....+++.+.+...  ..+|..+.+++-++|.++..+.++   .+...+++.+..+...+     .
T Consensus       461 d~L~~l-t~l~~~~~~~i~~~~l~~~~~~~~~sW~~lea~~~aigaIag~~~~~~E~~~Lp~vi~~Ll~L~e~~~~kd~k  539 (1073)
T 3gjx_A          461 ETLVYL-THLDYVDTEIIMTKKLQNQVNGTEWSWKNLNTLCWAIGSISGAMHEEDEKRFLVTVIKDLLGLCEQKRGKDNK  539 (1073)
T ss_dssp             HHHHHH-HHHCHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHSCSHHHH
T ss_pred             HHHHHH-hcCCHHHHHHHHHHHHHHHhcCCCCCHHHHhHHHHHHHHHHCcCCcccccchHHHHHHHHhcccccccccchh
Confidence            344443 355566667777777776544  457999999999999998655532   23345667676666443     3


Q ss_pred             HHHHHHHHHHHHHHHHhhCHH-HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh----------HHHhhHHH
Q 016814           89 AEVRIAAAGKVTKFCRILNPE-LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA----------TIEQLLPI  157 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~-~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~----------~~~~l~~~  157 (382)
                      ..++...+..+|+..+.+... .+.+.++..+.+.+.|+++.|+.+|+.++..+++..+...          +.+.++..
T Consensus       540 ~~vas~i~~vlgrY~~wl~~h~~~L~~vl~~L~~~m~~~~~~vq~aA~~af~~i~~~C~~~lv~~~~~e~~p~i~~il~~  619 (1073)
T 3gjx_A          540 AIIASNIMYIVGQYPRFLRAHWKFLKTVVNKLFEFMHETHDGVQDMACDTFIKIAQKCRRHFVQVQVGEVMPFIDEILNN  619 (1073)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTGGGGTSCCTTCSSCHHHHHHTS
T ss_pred             HHHHHHHHHHHhhhHHHHHhCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHHHH
Confidence            446666667888887765322 3556677788888899999999999999999987665432          23444444


Q ss_pred             HHHhhcCCChHHHHHHHHhhHHhhhhhchhhH----hhhHHHHHHHH----h----------cCCCc-hHHHHHHHHhHH
Q 016814          158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL----SQSLLPAIVEL----A----------EDRHW-RVRLAIIEYIPL  218 (382)
Q Consensus       158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~----~~~llp~l~~~----~----------~d~~~-~vr~~~~~~l~~  218 (382)
                      +.....+=.+.-......+++.+....+.+..    .+.++|...+-    .          .|+.+ +.-..++++...
T Consensus       620 ~~~~~~~l~~~~~~~lyeav~~vi~~~p~~~~~~~~i~~Lm~~~~~~w~~l~~~~~~~~~~~~d~~~i~~l~~il~~n~~  699 (1073)
T 3gjx_A          620 INTIICDLQPQQVHTFYEAVGYMIGAQTDQTVQEHLIEKYMLLPNQVWDSIIQQATKNVDILKDPETVKQLGSILKTNVR  699 (1073)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCchhccChHHHHHHHHHHhhhHH
Confidence            44555555677778888889988888775432    23333322221    1          12211 222345555566


Q ss_pred             HHhhhchhhhHHHHHHHHHHH----------hc----------cchh------HHHHHHHHHHHHHHHHhC-hHHHHhhh
Q 016814          219 LASQLGVGFFDDKLGALCMQW----------LQ----------DKVY------SIRDAAANNLKRLAEEFG-PEWAMQHI  271 (382)
Q Consensus       219 l~~~~~~~~~~~~l~~~l~~~----------l~----------d~~~------~vr~~a~~~l~~~~~~~~-~~~~~~~l  271 (382)
                      ++...|..+.. ++.+++..+          +.          +..+      .+|+..++.+..++.... .+.....+
T Consensus       700 v~~~~g~~f~~-~~~~i~~~~l~~y~~~s~~i~~~v~~~g~~~~~~~~~~~~r~ik~eil~l~~~~i~~~~~~~~v~~~~  778 (1073)
T 3gjx_A          700 ACKAVGHPFVI-QLGRIYLDMLNVYKCLSENISAAIQANGEMVTKQPLIRSMRTVKRETLKLISGWVSRSNDPQMVAENF  778 (1073)
T ss_dssp             HHHHHCGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGGSSHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHT
T ss_pred             HHhhcchhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhccHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHh
Confidence            67777764432 222222111          10          0111      245555566666554432 23344555


Q ss_pred             HHHHHhhh----cC-----cchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhcc---CCCccHHHHHHHHHHHHh
Q 016814          272 TPQVLEMI----NN-----PHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASK---DRVPNIKFNVAKVLQSLI  337 (382)
Q Consensus       272 ~~~l~~~l----~~-----~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~---d~~~~vR~~a~~~l~~i~  337 (382)
                      +|.+++..    .+     +++.+-......+.++...+.+.  ...+.++...+.+.+   +..|+.|..-.+.+..+.
T Consensus       779 i~pl~~~vl~dY~~~~p~~r~~evL~l~s~iv~k~~~~~~~~~~~il~~vf~~Tl~mi~~~f~~~Pe~r~~ff~ll~~~~  858 (1073)
T 3gjx_A          779 VPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFECTLNMINKDFEEYPEHRTNFFLLLQAVN  858 (1073)
T ss_dssp             SHHHHHHTHHHHHHSCGGGCCTHHHHHHHHHHHHHGGGTGGGHHHHHHHHHHHHHHHHSSCSSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHH
Confidence            55555432    22     22333333344444444433322  233444444455555   447889999999998887


Q ss_pred             hhhhH------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          338 PIVDQ------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       338 ~~~~~------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      .+.-.      ......++..+....+.+..++-..+.+.+..+..
T Consensus       859 ~~~f~~l~~l~~~~~~~~i~~i~wa~kh~~r~i~~~~l~~~~~ll~  904 (1073)
T 3gjx_A          859 SHCFPAFLAIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQ  904 (1073)
T ss_dssp             HHCGGGTTTSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHcCCHHHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHH
Confidence            76322      12224566666666667777776666666655543

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.64  E-value=1.5e-05  Score=69.77  Aligned_cols=281  Identities=10%  Similarity=0.075  Sum_probs=170.8

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA   89 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~   89 (382)
                      ++..++.|++.|....++++.  ..+.-+.....+++|.+..||..+++.|..+|+.    .....+...+.++++.+++
T Consensus        41 ~~k~K~LaaQ~I~kffk~FP~--l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDvL~QlLqtdd~  114 (507)
T 3u0r_A           41 GTKEKRLAAQFIPKFFKHFPE--LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADILTQLLQTDDS  114 (507)
T ss_dssp             CHHHHHHHHHHHHHHGGGCGG--GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHHHHHHTTCCCH
T ss_pred             CHHHHHHHHHHHHHHHhhChh--hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHHHHHHHhccch
Confidence            578899999999999999864  3566788889999999999999999999999865    3346789999999998888


Q ss_pred             HHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh----HhHHHhhHHHHHHhhcCC
Q 016814           90 EVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK----DATIEQLLPIFLSLLKDE  165 (382)
Q Consensus        90 ~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~----~~~~~~l~~~l~~~l~d~  165 (382)
                      .-+..+-++|..+.+.-+.. ....++..+..    .++.+|..+++.|..-...+++    ......+...+.+.+.|-
T Consensus       115 ~E~~~V~~sL~sllk~Dpk~-tl~~lf~~i~~----~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~~~ikK~L~DV  189 (507)
T 3u0r_A          115 AEFNLVNNALLSIFKMDAKG-TLGGLFSQILQ----GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELILTESKKVLEDV  189 (507)
T ss_dssp             HHHHHHHHHHHHHHHHCHHH-HHHHHHHHHHH----SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHhcChHH-HHHHHHHHHcc----cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHHHHHHHHhccc
Confidence            88888888888877643333 22233333333    3578999999988755444443    234567778888888876


Q ss_pred             ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHH----hhhchhhhHHHHHHH
Q 016814          166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLA----SQLGVGFFDDKLGAL  235 (382)
Q Consensus       166 ~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~----~~~~~~~~~~~l~~~  235 (382)
                      ...--..++..+..+- ..+...-.+.+++.+.+...      -.+...-...+.++....    .......|...+...
T Consensus       190 T~~EF~L~m~lL~~lk-l~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~StkFv~y~~~k  268 (507)
T 3u0r_A          190 TGEEFVLFMKILSGLK-SLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHSTRFVTYFCEQ  268 (507)
T ss_dssp             CHHHHHHHHHHHHTSG-GGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcc-cccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHh
Confidence            5433333333332221 11111112566666665532      123333333444443333    333333333333333


Q ss_pred             HHHHhccc-----hhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc----C---------------c--chHHHHH
Q 016814          236 CMQWLQDK-----VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN----N---------------P--HYLYRMT  289 (382)
Q Consensus       236 l~~~l~d~-----~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~----~---------------~--~~~~r~~  289 (382)
                      +...+.+-     ....+...++.++.++...|........++.+.+.|.    -               +  ++..-++
T Consensus       269 IlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~~p~~~~~~~~~~~~~p~l~fS~vEC  348 (507)
T 3u0r_A          269 VLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPLPPEEAENGENAGNEEPKLQFSYVEC  348 (507)
T ss_dssp             TGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCCCC--------------CCCHHHHHH
T ss_pred             hccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCCCcccccccccccccCcccchhHHHH
Confidence            33333332     2237888899999999988832222334444433331    1               1  2345567


Q ss_pred             HHHHHHHhccccC
Q 016814          290 ILRAISLLAPVMG  302 (382)
Q Consensus       290 a~~~l~~l~~~~~  302 (382)
                      .+.++..++....
T Consensus       349 LLy~fH~L~~k~P  361 (507)
T 3u0r_A          349 LLYSFHQLGRKLP  361 (507)
T ss_dssp             HHHHHHHHHTTCT
T ss_pred             HHHHHHHHhhhCh
Confidence            7777777776544

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.58  E-value=2.2e-05  Score=72.02  Aligned_cols=293  Identities=15%  Similarity=0.180  Sum_probs=178.5

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cC-CCHHHHHHHHHHHHHHHHHhCCc------------
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QD-KSWRVRYMVANQLYELCEAVGPE------------   70 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d-~~~~vR~~a~~~l~~l~~~~~~~------------   70 (382)
                      +.+..-..=|+.|+..+..+++.... .+-..-+|.+...+ +| .|.++=+.+.+.|..+...-+.+            
T Consensus        30 l~~~tl~eDRR~Av~~Lk~~sk~y~~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~  108 (651)
T 3grl_A           30 VASSTLLDDRRNAVRALKSLSKKYRL-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSED  108 (651)
T ss_dssp             HHHCCSHHHHHHHHHHHHHTTTTTTT-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------C
T ss_pred             HhhccchhHHHHHHHHHHHHHHHhHH-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchH
Confidence            33444556799999999999886654 33334344444444 44 45566666777776554211110            


Q ss_pred             -------c--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHH--HhhhHhhhhhcCCCchHHHHHHHH
Q 016814           71 -------P--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAI--QHILPCVKELSSDSSQHVRSALAS  136 (382)
Q Consensus        71 -------~--~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~--~~il~~l~~~~~d~~~~vr~~a~~  136 (382)
                             .  ....-++.++.++++++..+|..+++.|..++..-+..   .+.  ..-+|.+..+++|+...+|..++-
T Consensus       109 ~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneall  188 (651)
T 3grl_A          109 LGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVL  188 (651)
T ss_dssp             HHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHH
Confidence                   0  01246888999999999999999999999998766543   222  246789999999999999999999


Q ss_pred             HHHhhccccChH---hHHHhhHHHHHHhhcCCCh----HHHHHHHHhhHHhhhhhc--hhhHh-hhHHHHHHHHhcC---
Q 016814          137 VIMGMAPLLGKD---ATIEQLLPIFLSLLKDEFP----DVRLNIISKLDQVNQVIG--IDLLS-QSLLPAIVELAED---  203 (382)
Q Consensus       137 ~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~----~vr~~~~~~l~~~~~~~~--~~~~~-~~llp~l~~~~~d---  203 (382)
                      .|..+++.-..-   ...+..++.+.+++.++..    .|-..++..+..+.+.-.  ...|. ...+|.+..+++.   
T Consensus       189 LL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~  268 (651)
T 3grl_A          189 LLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDE  268 (651)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSC
T ss_pred             HHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCcc
Confidence            999998744321   1235566777777766443    666677777777765532  11221 1234444444432   


Q ss_pred             -CCchHH--HH---HHHHhHHHHhhhch---------hhhHHHHHHHHHHHhccc--hhHHHHHHHHHHHHHHHHhCh--
Q 016814          204 -RHWRVR--LA---IIEYIPLLASQLGV---------GFFDDKLGALCMQWLQDK--VYSIRDAAANNLKRLAEEFGP--  264 (382)
Q Consensus       204 -~~~~vr--~~---~~~~l~~l~~~~~~---------~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~--  264 (382)
                       ..|.-+  ..   ++..+..+...-++         ..+...+++.+.+++..+  ...+|..|+.+++.++.....  
T Consensus       269 ~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q  348 (651)
T 3grl_A          269 NSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQ  348 (651)
T ss_dssp             SSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence             245421  12   23333333322111         112223556666666544  578999999999998763321  


Q ss_pred             HHHH----------hhhHHHHHhhhcCcc-hHHHHHHHHHHHHhc
Q 016814          265 EWAM----------QHITPQVLEMINNPH-YLYRMTILRAISLLA  298 (382)
Q Consensus       265 ~~~~----------~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~  298 (382)
                      +.+.          ..++..++.++.+.+ ..+|.+++.++..+.
T Consensus       349 ~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~ay~  393 (651)
T 3grl_A          349 DYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFL  393 (651)
T ss_dssp             HHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            1121          123344455565544 789999999998875

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=98.54  E-value=4.3e-06  Score=82.08  Aligned_cols=335  Identities=12%  Similarity=0.036  Sum_probs=195.5

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccCh------hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC-----
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEP------QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP-----   69 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~------~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~-----   69 (382)
                      ++.|+.|++..-.+.|++.++.+......      +..|+.+.|++.+.+. +-+++....-..++.-+....++     
T Consensus       513 ~e~L~~~~dk~~qr~aaEi~aGll~gsK~w~~~~~~~~w~~l~p~l~~~l~~~lt~et~~~W~~~i~~~~~~~DprR~~~  592 (997)
T 1vsy_5          513 CESYYNKDDKASMIMSVEIVAGLVCGSKFMSVSDLDKRDTFIENFLAKCLDYELNHDAFEIWSTLAWWLPAVVDLRRSKT  592 (997)
T ss_dssp             HHHTCCSSCHHHHHHHHHHHHHHSSCCSSCCTTTHHHHHHHHHHHHHHHHSSCCCTTHHHHHHHHHHHHHHHSCGGGCHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHhcCCChhhhHH
Confidence            45678888888899999999999876432      4678889999999887 45555444444443333321110     


Q ss_pred             ---------------c------------------------ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---
Q 016814           70 ---------------E------------------------PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---  107 (382)
Q Consensus        70 ---------------~------------------------~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---  107 (382)
                                     .                        .....++..+.  ++++...||++....|..+....-   
T Consensus       593 L~e~l~~~~~~l~~~~~ssf~~~~rl~ll~~~l~~~~wr~~~~~~~l~~~~--l~h~y~~VRe~Ig~~L~~i~~~~~~~~  670 (997)
T 1vsy_5          593 FFCHFINADGMFDRESDAATHQTSKIYMLRSILMSMEFRAPDVGKLFDELV--FDHPYDQVRQAVAKLLTTLVQNQSNPS  670 (997)
T ss_dssp             HHHHHTCCCCCCCCCSSCCCCCCSSHHHHHHHHHHHTTSSCCCHHHHHHCC--SCCSCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred             HHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHhhcccC
Confidence                           0                        00011222222  466778999999999887765431   


Q ss_pred             ---H----------------------HHHHHhhh---HhhhhhcC---C--C-----ch--HHHHHHHHHHHhhccccCh
Q 016814          108 ---P----------------------ELAIQHIL---PCVKELSS---D--S-----SQ--HVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       108 ---~----------------------~~~~~~il---~~l~~~~~---d--~-----~~--~vr~~a~~~l~~l~~~~~~  147 (382)
                         .                      +.+.+.+.   ..+...-.   +  +     +.  ..-..++..+......-..
T Consensus       671 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~s~y~~~~kTvl~wl~~~l~~~~~  750 (997)
T 1vsy_5          671 ISDPTTLLEAERNDPDGLGLPLKSVPEKVDAYIKKQFEIIKNLEDSVVGLNPQQFIKTDYFYRTSTIFYWIKEMARGPNK  750 (997)
T ss_dssp             BSCHHHHHHHHHSCSSSSCCCSSCCCHHHHHHHHHHHHHHTGGGGTTSSCCSTTTTTSHHHHHHHHHHHHHHHHSSGGGH
T ss_pred             CCCHHHHHHhhccccccccCccccCcchHHHHHHHHHHHHHHhhhcccccCccccchHHHHHHHHHHHHHHHHHhcCCCc
Confidence               0                      11111111   11111111   1  1     11  1123344444433322111


Q ss_pred             Hh---HHH-hhHHHHHHhhcCCCh-HHHHH-HHHhhHHhhhhhchhhHhhhHHHHHHHHhc-CCCchHHHHHHHHhHHHH
Q 016814          148 DA---TIE-QLLPIFLSLLKDEFP-DVRLN-IISKLDQVNQVIGIDLLSQSLLPAIVELAE-DRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       148 ~~---~~~-~l~~~l~~~l~d~~~-~vr~~-~~~~l~~~~~~~~~~~~~~~llp~l~~~~~-d~~~~vr~~~~~~l~~l~  220 (382)
                      ..   ... .++|.+..+.++++. ++... +...+..+....-.....+.++..+.+..+ +++| +|..++..+..+.
T Consensus       751 ~~l~~~~~~~llP~ll~l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~  829 (997)
T 1vsy_5          751 VLLVPYLVDYVLPFLIGLVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFL  829 (997)
T ss_dssp             HHHHHHHTTTTTTTTCTTSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHH
T ss_pred             cchhhhhHHHHHHHHHHHhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHH
Confidence            11   112 255656555555443 44444 333444443322222222555556655555 6899 9999999887664


Q ss_pred             hh----hchhhhHHHHHHHHHHHhccch-hHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcC------------cc
Q 016814          221 SQ----LGVGFFDDKLGALCMQWLQDKV-YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINN------------PH  283 (382)
Q Consensus       221 ~~----~~~~~~~~~l~~~l~~~l~d~~-~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~------------~~  283 (382)
                      -.    ++.+. ...+...+..+|.|+. .+||+.|+.+|+-++...+.......++..+.+.+..            ++
T Consensus       830 f~n~f~l~~~~-~~~i~~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~~  908 (997)
T 1vsy_5          830 SAELLQLTEEE-KNKILEFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSKT  908 (997)
T ss_dssp             HHHTTTSCTTH-HHHTHHHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHHH
T ss_pred             HHHHHHcCHHH-HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccchH
Confidence            31    12222 2468888899999999 9999999999999997542422233455555555522            11


Q ss_pred             hHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          284 YLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      ...|.+|+..++.++..++-.    ...+.++..|.....|+.+ ++.++-++++.+-....
T Consensus       909 ~~~rH~aVLgL~AlV~a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH~  969 (997)
T 1vsy_5          909 DIKIHGNVLGLGAIISAFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVRA  969 (997)
T ss_dssp             CHHHHHHHHHHHHHHTTCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhccc
Confidence            268899999999998776643    3666777777777888544 99999999998876543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=98.53  E-value=4.1e-05  Score=77.74  Aligned_cols=329  Identities=10%  Similarity=-0.014  Sum_probs=181.7

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhh---hhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC-cc---cccch----HH
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCV---AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP-EP---TRMDL----VP   78 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~---~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~---~~~~l----l~   78 (382)
                      ++.++..+++++.....-.+.....   ..+++.+..++.+  +.+|..|+++|..++..-.. +.   ....+    +.
T Consensus       220 ~~~l~~~aL~~l~~~l~Wi~~~~i~~~~~~ll~~l~~~l~~--~~lr~~A~ecL~~i~s~~~~~~~~~~li~~l~~~~l~  297 (1204)
T 3a6p_A          220 NCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNE--QELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMH  297 (1204)
T ss_dssp             HHHHHHHHHHHHHTTTTTSCHHHHHTTTSHHHHHHHHGGGC--TTTHHHHHHHHHHHHTCCSCHHHHGGGGGGGSHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccCHHHHHhccchHHHHHHHHcCC--HHHHHHHHHHHHHHHhCCCChhhHHHHHHHHhhHHHH
Confidence            4456777777776555433332221   2377777777664  57899999999999863322 11   01111    11


Q ss_pred             HHHHhc--------CCCcHHHHHHHHHHHHHHHHhhCH----------HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHh
Q 016814           79 AYVRLL--------RDNEAEVRIAAAGKVTKFCRILNP----------ELAIQHILPCVKELSSDSSQHVRSALASVIMG  140 (382)
Q Consensus        79 ~l~~~l--------~d~~~~VR~~a~~~l~~l~~~~~~----------~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~  140 (382)
                      .+.+..        .|.+.++++..++.+..++.....          ......+++.+..+..+++..|-..++.....
T Consensus       298 ~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~~l~~l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~vs~~~l~fW~~  377 (1204)
T 3a6p_A          298 YILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGA  377 (1204)
T ss_dssp             HHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCTTHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccccccChhHHHHHHHHHHHHHhCccHHhHHHHHHHHHH
Confidence            223322        223456777777777776643221          11234678888888888888887777776665


Q ss_pred             hcccc--Ch-H---hHHHhhHHHHHH---hh---cCCC---------------------hHHHHHHHHhhHHhhhhhchh
Q 016814          141 MAPLL--GK-D---ATIEQLLPIFLS---LL---KDEF---------------------PDVRLNIISKLDQVNQVIGID  187 (382)
Q Consensus       141 l~~~~--~~-~---~~~~~l~~~l~~---~l---~d~~---------------------~~vr~~~~~~l~~~~~~~~~~  187 (382)
                      +.+..  +. +   .....+++.+..   -+   .+.+                     .+.|..+...+..++...+.+
T Consensus       378 ll~~~~~~~~~~~~~~l~~Ll~vl~~~l~k~~yp~~~~~~~~~~~~~D~d~~~E~~~~f~~~Rk~~~d~l~~i~~v~p~~  457 (1204)
T 3a6p_A          378 LFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKT  457 (1204)
T ss_dssp             HHSCTTTTTCHHHHHHHHHHHHHHHHHHSCCCCSSCCSSTHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             HHhcccccccHHHHHHHHHHHHHHHHHHHHhcCccccCCcchhhhhcccCCcHHHHHHHHHHHHHHHHHHHHHHhcCHHH
Confidence            54432  11 1   123455555522   11   1000                     123554554554444443333


Q ss_pred             hHhhhHHHHHHHHhcC-------------------------CCchHHHHHHHHhHHHHhhh---c-hhhhHHHHHHHHHH
Q 016814          188 LLSQSLLPAIVELAED-------------------------RHWRVRLAIIEYIPLLASQL---G-VGFFDDKLGALCMQ  238 (382)
Q Consensus       188 ~~~~~llp~l~~~~~d-------------------------~~~~vr~~~~~~l~~l~~~~---~-~~~~~~~l~~~l~~  238 (382)
                      .+ ..+.+.+...+.+                         +.|....+....+..++..+   . .+.....+.+.++.
T Consensus       458 ~l-~~v~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~ea~~~~leav~~~~~~~~e~~~l~~~~~~~Ll~  536 (1204)
T 3a6p_A          458 SF-QMAGEWLKYQLSTFLDAGSVNSCSAVGTGEGSLCSVFSPSFVQWEAMTLFLESVITQMFRTLNREEIPVNDGIELLQ  536 (1204)
T ss_dssp             HH-HHHHHHHHHHHTCC-----------------CCSCSSSHHHHHHHHHHHHHHHHHHHHHHHSCTTCCCHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHhhhhcccccccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHH
Confidence            33 5555666444332                         12333444444444444333   1 01111123333333


Q ss_pred             Hh---ccchhHHHHHHHHHHHHHHHHhCh-HHHHhhhHHHHHhhhcC------------cchHHHHHHHHHHHHhccccC
Q 016814          239 WL---QDKVYSIRDAAANNLKRLAEEFGP-EWAMQHITPQVLEMINN------------PHYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       239 ~l---~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~l~~~l~~~l~~------------~~~~~r~~a~~~l~~l~~~~~  302 (382)
                      .+   ...++.+|..++.+++.+...+.. ..+...++..++..+.+            .+..+|..|+.++..++..++
T Consensus       537 ~ll~~~~~~p~l~~~~i~~l~~l~~~~~~~p~~L~~vL~~ll~~l~~~~~~~~~~~~~~~~k~vr~~a~~al~~L~~~~~  616 (1204)
T 3a6p_A          537 MVLNFDTKDPLILSCVLTNVSALFPFVTYRPEFLPQVFSKLFSSVTFETVEESKAPRTRAVRNVRRHACSSIIKMCRDYP  616 (1204)
T ss_dssp             HHHHCCCSCHHHHHHHHHHHHHHGGGGGTCGGGHHHHHHHHHHHHHCCTTCSTTSCCCHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHhCCCCChHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHhhccCCcccccccccHHHHHHHHHHHHHHHHHHHHhh
Confidence            32   345778999999999998887653 23445566666666655            235799999999999998876


Q ss_pred             hh--hhhhhhHHHHHhhccCCC---ccHHHHHHHHHHHHhhhhh
Q 016814          303 SE--ITCSRLLPVVINASKDRV---PNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       303 ~~--~~~~~~l~~l~~~l~d~~---~~vR~~a~~~l~~i~~~~~  341 (382)
                      ..  .+.+.+...+-..+....   ..-+..-.+++..++..++
T Consensus       617 ~~L~p~~~~i~~~~~~~l~~~~~l~~~e~~~L~eal~~ia~~~~  660 (1204)
T 3a6p_A          617 QLVLPNFDMLYNHVKQLLSNELLLTQMEKCALMEALVLISNQFK  660 (1204)
T ss_dssp             HHHGGGHHHHHHHHHHHHHSTTTSCHHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHhccCC
Confidence            54  456666666666554332   4456666677777755443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=98.51  E-value=0.00013  Score=63.96  Aligned_cols=264  Identities=13%  Similarity=0.066  Sum_probs=154.6

Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHH
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPI  157 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~  157 (382)
                      ..++...+- +...+.-|++.+..+.+.++.-  .+..+..+..+++|.+..||..+++.|..+|..    .....+..+
T Consensus        32 ~~Il~~~kg-~~k~K~LaaQ~I~kffk~FP~l--~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i~kiaDv  104 (507)
T 3u0r_A           32 QVILDGVKG-GTKEKRLAAQFIPKFFKHFPEL--ADSAINAQLDLCEDEDVSIRRQAIKELPQFATG----ENLPRVADI  104 (507)
T ss_dssp             HHHHHGGGS-CHHHHHHHHHHHHHHGGGCGGG--HHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCHHHHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhhChhh--HHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhhhhHHHH
Confidence            334444443 5788888888888888877543  235677888899999999999999999999875    346788888


Q ss_pred             HHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhh----HHHHH
Q 016814          158 FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFF----DDKLG  233 (382)
Q Consensus       158 l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~----~~~l~  233 (382)
                      +.+++..+++.-+..+-++|..+.+.-+..    .+-..+.++.+ .+..+|..++..|..-...++.+.+    ...+.
T Consensus       105 L~QlLqtdd~~E~~~V~~sL~sllk~Dpk~----tl~~lf~~i~~-~~e~~Rer~lkFi~~kl~~l~~~~l~~E~E~~i~  179 (507)
T 3u0r_A          105 LTQLLQTDDSAEFNLVNNALLSIFKMDAKG----TLGGLFSQILQ-GEDIVRERAIKFLSTKLKTLPDEVLTKEVEELIL  179 (507)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHHHHHCHHH----HHHHHHHHHHH-SCHHHHHHHHHHHHHHGGGSCTTTSCHHHHHHHH
T ss_pred             HHHHHhccchHHHHHHHHHHHHHHhcChHH----HHHHHHHHHcc-cchHHHHHHHHHHHHHHhhcchhhccHHHHHHHH
Confidence            899998888887777777777776553332    22233333333 3467888888877665555554333    34566


Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh------cCcchHHHHHHH----HHHHHhccccCh
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI------NNPHYLYRMTIL----RAISLLAPVMGS  303 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l------~~~~~~~r~~a~----~~l~~l~~~~~~  303 (382)
                      ..+.+.+.|-...-=......+.. .+.++.-.-...+++.+.+..      .-.+...-...+    .++..+++....
T Consensus       180 ~~ikK~L~DVT~~EF~L~m~lL~~-lkl~~t~~g~qeLv~ii~eQa~L~~~f~~sD~e~vdRlI~C~~~ALP~FS~~v~S  258 (507)
T 3u0r_A          180 TESKKVLEDVTGEEFVLFMKILSG-LKSLQTVSGRQQLVELVAEQADLEQTFNPSDPDCVDRLLQCTRQAVPLFSKNVHS  258 (507)
T ss_dssp             HHHHHHTTSCCHHHHHHHHHHHHT-SGGGSSHHHHHHHHHHHHHHHTTTSCCCSSCHHHHHHHHHHHHHHGGGCBTTBCC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHh-cccccCchHHHHHHHHHHHHHhccCCCCCcCHHHHHHHHHHHHHHHHHhccCCCh
Confidence            666677766443221111122211 111221112334555555542      112333333333    444444444444


Q ss_pred             hhhhhhhHHHHHhhccCCCc-----cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHH
Q 016814          304 EITCSRLLPVVINASKDRVP-----NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV  354 (382)
Q Consensus       304 ~~~~~~~l~~l~~~l~d~~~-----~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~  354 (382)
                      ..+...+...++..+++-..     ..+...+++++.+....+........++.+.
T Consensus       259 tkFv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy  314 (507)
T 3u0r_A          259 TRFVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLF  314 (507)
T ss_dssp             HHHHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHH
Confidence            44555555555555554333     3899999999999998883222333334333

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.45  E-value=0.00012  Score=69.77  Aligned_cols=148  Identities=17%  Similarity=0.150  Sum_probs=92.6

Q ss_pred             hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc--ccccchH-HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH-
Q 016814           34 VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE--PTRMDLV-PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE-  109 (382)
Q Consensus        34 ~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~--~~~~~ll-~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~-  109 (382)
                      .+.++|++.. ++++++..|..|+.+|+.++..-...  .....++ +.+..++.|++..||.+|+.+|.+++...+.+ 
T Consensus        33 ~~~i~Pll~~-L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~  111 (684)
T 4gmo_A           33 EDKILPVLKD-LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADF  111 (684)
T ss_dssp             HHTTHHHHHH-HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             hhhHHHHHHH-cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchH
Confidence            4568898866 67889999999999999998521111  1123344 55677899999999999999999998877665 


Q ss_pred             ---HHHHhhhHhhhhhcCCC--------------c-------hHHHHHHHHHHHhhccccChH---hHHHhhHHHHHHhh
Q 016814          110 ---LAIQHILPCVKELSSDS--------------S-------QHVRSALASVIMGMAPLLGKD---ATIEQLLPIFLSLL  162 (382)
Q Consensus       110 ---~~~~~il~~l~~~~~d~--------------~-------~~vr~~a~~~l~~l~~~~~~~---~~~~~l~~~l~~~l  162 (382)
                         .+...+++.+..+++..              .       +.+-..++.++..++..-+..   ......+|.+...+
T Consensus       112 ~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L  191 (684)
T 4gmo_A          112 CVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRL  191 (684)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHH
Confidence               23345667666654210              0       122334455555555432221   11233445444444


Q ss_pred             cC---CChHHHHHHHHhhHHhhh
Q 016814          163 KD---EFPDVRLNIISKLDQVNQ  182 (382)
Q Consensus       163 ~d---~~~~vr~~~~~~l~~~~~  182 (382)
                      .+   ...+++..++.+|..+.+
T Consensus       192 ~~~~~~~~~v~~~a~~~L~~ls~  214 (684)
T 4gmo_A          192 ISADIAPQDIYEEAISCLTTLSE  214 (684)
T ss_dssp             HHHCCSCHHHHHHHHHHHHHHHT
T ss_pred             HhcCCCcHHHHHHHHHHHHHHhc
Confidence            22   246788888888877654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.35  E-value=2.7e-05  Score=63.01  Aligned_cols=148  Identities=13%  Similarity=0.047  Sum_probs=101.7

Q ss_pred             cchHHHHHHhcCCCcH--HHHHHHHHHHHHHHHhhCH---HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh-
Q 016814           74 MDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNP---ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK-  147 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~--~VR~~a~~~l~~l~~~~~~---~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~-  147 (382)
                      ..-+|.+++++.++++  .++..++.++..++..-.+   .......+|.|.+++++.++.++..++.+|..++..-.. 
T Consensus         7 ~~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            7 EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            3468999999988777  8888888888888754321   133346789999999999999999999999999753211 


Q ss_pred             -H-hHHHhhHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhc-hhhHhhhHHHHHHHHhc----------------CCCch
Q 016814          148 -D-ATIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIG-IDLLSQSLLPAIVELAE----------------DRHWR  207 (382)
Q Consensus       148 -~-~~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~-~~~~~~~llp~l~~~~~----------------d~~~~  207 (382)
                       . .....-+|.+.+++. ..++.+++.++.+|..+...-. ...+.+.-+|.+.+++.                ..+..
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~  166 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFD  166 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHH
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHH
Confidence             1 122567888888987 4688999998877777754311 12222334565554321                01346


Q ss_pred             HHHHHHHHhHHHHh
Q 016814          208 VRLAIIEYIPLLAS  221 (382)
Q Consensus       208 vr~~~~~~l~~l~~  221 (382)
                      ++..+..+|..++.
T Consensus       167 v~~na~~~L~nLss  180 (233)
T 3tt9_A          167 IFYNVTGCLRNMSS  180 (233)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhc
Confidence            77788888777754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=98.28  E-value=5.8e-05  Score=61.03  Aligned_cols=186  Identities=16%  Similarity=0.075  Sum_probs=121.1

Q ss_pred             hHHHHHHHHhcCCCc--hHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--
Q 016814          192 SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--  264 (382)
Q Consensus       192 ~llp~l~~~~~d~~~--~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--  264 (382)
                      .-+|.+.+++.++++  .++..++..+..++..-.+   .......+|.+..+|.+++.++++.|+.+|..++..-..  
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk   87 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK   87 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence            346777888877777  7777787888777643221   222234678889999988899999999999998752111  


Q ss_pred             -HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhcc----------------CCCccH
Q 016814          265 -EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASK----------------DRVPNI  325 (382)
Q Consensus       265 -~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~----------------d~~~~v  325 (382)
                       .......+|.+..++. .+++.+++.++.++..++..-... .+...-+|.+...+.                ..++.+
T Consensus        88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHHHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhccHHHHHHHHhccccCCcccccccccccchHHH
Confidence             1123457888888887 467889999998888887543322 233445666665432                124579


Q ss_pred             HHHHHHHHHHHhhhh-hHH-HHH--HhHHHHHHHhc------CCCCccHHhHHHHHHHHHHH
Q 016814          326 KFNVAKVLQSLIPIV-DQS-MVE--KTIRPCLVELT------EDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       326 R~~a~~~l~~i~~~~-~~~-~~~--~~i~~~l~~l~------~d~~~~vr~~a~~al~~~~~  377 (382)
                      +..|..+|..+...- ..+ .+.  ..+++.|..++      .+++...+..+.-++..+..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            999999999987532 111 111  23455555543      33566778888888876643

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=98.12  E-value=0.0013  Score=60.42  Aligned_cols=283  Identities=12%  Similarity=0.092  Sum_probs=159.6

Q ss_pred             chHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC-C-CchHHHHHHHHHHHhhccccChHhHH
Q 016814           75 DLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS-D-SSQHVRSALASVIMGMAPLLGKDATI  151 (382)
Q Consensus        75 ~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~-d-~~~~vr~~a~~~l~~l~~~~~~~~~~  151 (382)
                      +-++.+.+.+. ..-.+-|.+|+..|..+++....+.- ..-+|.+...++ | .+..+-..+.++|..+...-+.+.. 
T Consensus        21 etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~~~Vg-~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~-   98 (651)
T 3grl_A           21 ETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVG-IQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEV-   98 (651)
T ss_dssp             HHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTTTHHH-HHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC------
T ss_pred             hHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhHHHhh-hhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccc-
Confidence            34555555444 34577899999999988876654433 334455555443 3 3444444455555443322111110 


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhH--
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD--  229 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~--  229 (382)
                      ..       .-.....++   ..+....+..       .+.-++.+..++++++..+|..+++.|..++..-+.....  
T Consensus        99 ~~-------~~~~~~~~~---~~~~~d~f~~-------~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~I  161 (651)
T 3grl_A           99 EE-------NSTRQSEDL---GSQFTEIFIK-------QQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQII  161 (651)
T ss_dssp             ----------------CH---HHHHHHHHHH-------STHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             cc-------cccccchHH---HHHHHHHHHc-------CCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            00       000000001   0111111111       1456788899999999999999999999998765543221  


Q ss_pred             ---HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh-HH--HHhhhHHHHHhhhcCcch----HHHHHHHHHHHHhcc
Q 016814          230 ---DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP-EW--AMQHITPQVLEMINNPHY----LYRMTILRAISLLAP  299 (382)
Q Consensus       230 ---~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~--~~~~l~~~l~~~l~~~~~----~~r~~a~~~l~~l~~  299 (382)
                         +.-++.++.+|.|+...+|..++..+..+++.-.. +.  ..+..++.++..+.....    .+-+-++..+..+.+
T Consensus       162 l~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr  241 (651)
T 3grl_A          162 LVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK  241 (651)
T ss_dssp             HHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT
T ss_pred             HhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh
Confidence               24578889999999999999999999999874321 11  233466777777665443    566667777777776


Q ss_pred             ccC--hhhhh-hhhHHHHHhhccCCCcc------HHHH---HHHHHHHHhhhhhH---------HHHHHhHHHHHHHhcC
Q 016814          300 VMG--SEITC-SRLLPVVINASKDRVPN------IKFN---VAKVLQSLIPIVDQ---------SMVEKTIRPCLVELTE  358 (382)
Q Consensus       300 ~~~--~~~~~-~~~l~~l~~~l~d~~~~------vR~~---a~~~l~~i~~~~~~---------~~~~~~i~~~l~~l~~  358 (382)
                      .-.  ...|. ...+|.+..+++.+...      .-..   ++..+..+...-+.         ......+++.+..++-
T Consensus       242 ~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~  321 (651)
T 3grl_A          242 NNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILM  321 (651)
T ss_dssp             TCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHT
T ss_pred             cCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHc
Confidence            532  22333 34566677776543221      2222   33344444332111         1234566777777654


Q ss_pred             CC--CccHHhHHHHHHHHHH
Q 016814          359 DP--DVDVRFFATQAIQSID  376 (382)
Q Consensus       359 d~--~~~vr~~a~~al~~~~  376 (382)
                      .+  ...+|..|..+++.+.
T Consensus       322 ~~~~p~~i~~~Al~tla~~i  341 (651)
T 3grl_A          322 ATGVPADILTETINTVSEVI  341 (651)
T ss_dssp             CSSCCHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHH
Confidence            33  4568887777777654

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=97.84  E-value=0.023  Score=54.12  Aligned_cols=138  Identities=10%  Similarity=-0.028  Sum_probs=87.1

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChh---hhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc----cccchHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQ---DCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP----TRMDLVP   78 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~----~~~~ll~   78 (382)
                      ++++++..|..|+.++..++..-...   ...+.+.+++..++.|++..||.+++.+|.+|+...|.+.    +...+++
T Consensus        43 L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~~~~il~  122 (684)
T 4gmo_A           43 LKSPDAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLYRLDVLT  122 (684)
T ss_dssp             HSSSCCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHHHcChHH
Confidence            56789999999999999998632221   1123355677888999999999999999999997766432    2344677


Q ss_pred             HHHHhcCCCc---------------------HHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcC---CCchHHH
Q 016814           79 AYVRLLRDNE---------------------AEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS---DSSQHVR  131 (382)
Q Consensus        79 ~l~~~l~d~~---------------------~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~---d~~~~vr  131 (382)
                      .+..++....                     +.+-..++..|..+++.-..-   ......+|.+...+.   .....++
T Consensus       123 ~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~  202 (684)
T 4gmo_A          123 AIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIY  202 (684)
T ss_dssp             HHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHH
T ss_pred             HHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHH
Confidence            6665552110                     123334445555555432211   112234555555442   2345788


Q ss_pred             HHHHHHHHhhcc
Q 016814          132 SALASVIMGMAP  143 (382)
Q Consensus       132 ~~a~~~l~~l~~  143 (382)
                      ..++.+|..+..
T Consensus       203 ~~a~~~L~~ls~  214 (684)
T 4gmo_A          203 EEAISCLTTLSE  214 (684)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhc
Confidence            888888888754

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.39  E-value=0.014  Score=58.37  Aligned_cols=132  Identities=11%  Similarity=-0.018  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHhcC----CCchHHHHHHHHhHHHHhhhc------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Q 016814          191 QSLLPAIVELAED----RHWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE  260 (382)
Q Consensus       191 ~~llp~l~~~~~d----~~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~  260 (382)
                      ..++..+..++++    +++.+|..++-.++.++...-      +....+.+...+.+.+...+.+-+..++++||.+..
T Consensus       390 ~e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~  469 (1056)
T 1lsh_A          390 RESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ  469 (1056)
T ss_dssp             HHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC
Confidence            3455555555544    456788888888888876442      112235566666677777777778888888888764


Q ss_pred             HhChHHHHhhhHHHHHhhhcC-------cchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc--cCCCccHHHHHHH
Q 016814          261 EFGPEWAMQHITPQVLEMINN-------PHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS--KDRVPNIKFNVAK  331 (382)
Q Consensus       261 ~~~~~~~~~~l~~~l~~~l~~-------~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l--~d~~~~vR~~a~~  331 (382)
                              ...++.+...+..       ...++|.+|+.++..+.... +    ..+-+.+++..  ....+++|..|+.
T Consensus       470 --------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p----~~v~~il~~i~~n~~e~~EvRiaA~~  536 (1056)
T 1lsh_A          470 --------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-P----RKVQEIVLPIFLNVAIKSELRIRSCI  536 (1056)
T ss_dssp             --------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-H----HHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred             --------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-h----HHHHHHHHHHhcCCCCChHHHHHHHH
Confidence                    1245556555531       23578899999998887432 2    23334444544  3445789999988


Q ss_pred             HHHH
Q 016814          332 VLQS  335 (382)
Q Consensus       332 ~l~~  335 (382)
                      .|-.
T Consensus       537 ~Lm~  540 (1056)
T 1lsh_A          537 VFFE  540 (1056)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8754

>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6

Probab=97.25  E-value=0.0013  Score=64.72  Aligned_cols=176  Identities=13%  Similarity=0.047  Sum_probs=116.2

Q ss_pred             hccCCch-HHHHH-HHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHH-h---CCcccccchH
Q 016814            5 QQSNDQD-SVRLL-AVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEA-V---GPEPTRMDLV   77 (382)
Q Consensus         5 l~~d~~~-~vR~~-a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~-~---~~~~~~~~ll   77 (382)
                      +.++++. +.... |..++..++...-+....+.++..+.+... +++| .|..++..+..+.-. +   .++ ....+.
T Consensus       768 l~~~~d~~eL~~~~a~~~l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~-~~~~i~  845 (997)
T 1vsy_5          768 LVKHKDVCALASLDPVRLYAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEE-EKNKIL  845 (997)
T ss_dssp             TSSCSHHHHHTTCCSHHHHHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTT-HHHHTH
T ss_pred             HhhcCcHHHHHhhHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHH-HHHHHH
Confidence            3444443 45555 556666666554445555667777777666 7899 999998887655431 1   222 234689


Q ss_pred             HHHHHhcCCCc-HHHHHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhhcCC------------CchHHHHHHHHHHHhhcc
Q 016814           78 PAYVRLLRDNE-AEVRIAAAGKVTKFCRIL-NPELAIQHILPCVKELSSD------------SSQHVRSALASVIMGMAP  143 (382)
Q Consensus        78 ~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~~~d------------~~~~vr~~a~~~l~~l~~  143 (382)
                      ..+..++.|+. .+||+.|..+|..+..+. ...... .++..+.+.+..            ++...|.+++-.|+.+..
T Consensus       846 ~~v~~~L~D~q~~EVRe~Aa~tLsgll~c~~~~~~~~-~li~~f~~~~~~~~~~~~~~~~~~~~~~~rH~aVLgL~AlV~  924 (997)
T 1vsy_5          846 EFVVSNLYNEQFVEVRVRAASILSDIVHNWKEEQPLL-SLIERFAKGLDVNKYTSKERQKLSKTDIKIHGNVLGLGAIIS  924 (997)
T ss_dssp             HHHTTTTTCSSCHHHHHHHHHHHHHHHHSCCSHHHHH-HHHHHHTTSSTTTSSCHHHHHHHHHHCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHHHHcCCchhhHH-HHHHHHHHHHhhcccccccccccchHHHHHHHHHHHHHHHHh
Confidence            99999999999 999999999999998776 433222 344445444411            112577888888888887


Q ss_pred             ccChH----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhh
Q 016814          144 LLGKD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       144 ~~~~~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .++-+    .+.+.++..+....+|+.+ ++..+-++++.+-+..
T Consensus       925 a~Py~vP~P~w~P~~l~~La~~~~~~~~-i~~tvk~tlseFkrTH  968 (997)
T 1vsy_5          925 AFPYVFPLPPWIPKNLSNLSSWARTSGM-TGNAAKNTISEFKKVR  968 (997)
T ss_dssp             TCSCCSSCCTHHHHHHHHHHTTSSSCSS-HHHHTHHHHHHHHHHT
T ss_pred             hCCCCCCCCcccHHHHHHHHHHhCCCCc-hHHHHHHHHHHHHhcc
Confidence            77633    3556666677777777444 7777777777776543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=97.25  E-value=0.084  Score=45.78  Aligned_cols=183  Identities=12%  Similarity=0.126  Sum_probs=96.9

Q ss_pred             HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814          169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  248 (382)
                      .+...+.....+.-.-.+. +.+.++|.+.++..|++..+|+.+++.+...+.. ..+ +...+++.+..++.|++..|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dps-Ll~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~-~~e-l~~~~l~~L~~LL~d~d~~V~  117 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDPT-LLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR-DIE-LLLKLIANLNMLLRDENVNVV  117 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCGG-GGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH-CGG-GHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhccCHH-HHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHcCCCHHHH
Confidence            3444444444432222222 2256666666666666666666666666665542 222 234566666666666666666


Q ss_pred             HHHHHHHHHHHHHh-------Ch------H-H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh----------
Q 016814          249 DAAANNLKRLAEEF-------GP------E-W-AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS----------  303 (382)
Q Consensus       249 ~~a~~~l~~~~~~~-------~~------~-~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~----------  303 (382)
                      +.++.+.+.+....       +.      + | ....+-..++..+.+.+..+|..++.++..++-....          
T Consensus       118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~  197 (386)
T 3o2t_A          118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRR  197 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHTSCCCTTCCCCGG
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHhCCCCCCcccccc
Confidence            66666655554211       00      0 1 1233445555666667788888888888876421110          


Q ss_pred             ----------------------hhhhhhhHHHHHhhccCCC--ccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHh
Q 016814          304 ----------------------EITCSRLLPVVINASKDRV--PNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL  356 (382)
Q Consensus       304 ----------------------~~~~~~~l~~l~~~l~d~~--~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l  356 (382)
                                            +..-..++..++..+.++.  +..=.+++.+|+.++..=  +.+...+++.+..+
T Consensus       198 ~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a~lnsLa~Iak~R--P~~~~rIl~aL~~l  272 (386)
T 3o2t_A          198 QEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTTALGSLANIARQR--PMFMSEVIQAYETL  272 (386)
T ss_dssp             GTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHHHHHS--GGGHHHHHHHHHHH
T ss_pred             cCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHhc--HHHHHHHHHHHHhh
Confidence                                  0112456677777777532  223345555666555421  23456777777764

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=97.24  E-value=0.013  Score=58.70  Aligned_cols=170  Identities=13%  Similarity=0.039  Sum_probs=103.8

Q ss_pred             hhHHHHHHhhcC----CChHHHHHHHHhhHHhhhhhch------hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhh
Q 016814          153 QLLPIFLSLLKD----EFPDVRLNIISKLDQVNQVIGI------DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQ  222 (382)
Q Consensus       153 ~l~~~l~~~l~d----~~~~vr~~~~~~l~~~~~~~~~------~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~  222 (382)
                      ..+..+..++++    .++.+|..++-+++.+....-.      ....+.+...+.+.+...+...+..+++.|+.+.. 
T Consensus       391 e~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          391 ESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            344455555544    4678999999999887654311      12235555556666666666677778888877653 


Q ss_pred             hchhhhHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc--CcchHHHHHHHHH
Q 016814          223 LGVGFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN--NPHYLYRMTILRA  293 (382)
Q Consensus       223 ~~~~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~--~~~~~~r~~a~~~  293 (382)
                        +     ..++.+.+++.       +...+||.+|+.++..+.... ++    .+-+.+...+.  ..+..+|.+|+..
T Consensus       470 --p-----~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~-p~----~v~~il~~i~~n~~e~~EvRiaA~~~  537 (1056)
T 1lsh_A          470 --P-----NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PR----KVQEIVLPIFLNVAIKSELRIRSCIV  537 (1056)
T ss_dssp             --G-----GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HH----HHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             --h-----hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc-hH----HHHHHHHHHhcCCCCChHHHHHHHHH
Confidence              1     23334444442       234679999999999887532 22    24445555554  3458899999998


Q ss_pred             HHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh
Q 016814          294 ISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       294 l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      +..-.   +.......+..   ..-.|++.+|+......|..++..-.
T Consensus       538 Lm~t~---P~~~~l~~ia~---~l~~E~~~QV~sfv~S~l~sla~s~~  579 (1056)
T 1lsh_A          538 FFESK---PSVALVSMVAV---RLRREPNLQVASFVYSQMRSLSRSSN  579 (1056)
T ss_dssp             HHHTC---CCHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHHTTCCS
T ss_pred             HHHHC---cCHHHHHHHHH---HHhhCchHHHHHHHHHHHHHHHhcCC
Confidence            85432   22222233322   23356788888888888888776543

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.21  E-value=0.053  Score=44.28  Aligned_cols=127  Identities=15%  Similarity=0.239  Sum_probs=73.4

Q ss_pred             HHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHH
Q 016814          169 VRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR  248 (382)
Q Consensus       169 vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr  248 (382)
                      .+...+.....+.-.-.+. +.+.+++.+.++..|++..+|+.+++.+...+..  ...+....++.+..+++|+++.|.
T Consensus        31 ~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~~l~~L~~Ll~d~d~~V~  107 (257)
T 3gs3_A           31 TKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPHVINVVSMLLRDNSAQVI  107 (257)
T ss_dssp             HHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            4444444444433222232 2355666666666666666777777766665532  223345566666666666666666


Q ss_pred             HHHHHHHHHHHHHh-------Ch-----H--H-HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhc
Q 016814          249 DAAANNLKRLAEEF-------GP-----E--W-AMQHITPQVLEMINNPHYLYRMTILRAISLLA  298 (382)
Q Consensus       249 ~~a~~~l~~~~~~~-------~~-----~--~-~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~  298 (382)
                      +.++.+.+.+....       +.     +  | ....+-..+...+.+.+..+|..++.++..+.
T Consensus       108 K~~I~~~~~iY~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~n~gvkl~~iKF~e~vI  172 (257)
T 3gs3_A          108 KRVIQACGSIYKNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNENDGIRTNAIKFLEGVV  172 (257)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHH
Confidence            66666665554321       11     0  0 12345556666777778999999999999875

>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}

Probab=97.08  E-value=0.077  Score=43.31  Aligned_cols=160  Identities=7%  Similarity=0.055  Sum_probs=75.0

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQH  270 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  270 (382)
                      +.++..+.+.-...+ ..|...+.....++-.-.+. +.+++++.+..+..|++.++|.-.+..+...+..  ...+...
T Consensus        15 ~~v~~lln~A~~~~~-~~kl~~L~qa~el~~~~dp~-ll~~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~--k~~l~~~   90 (257)
T 3gs3_A           15 AKVVDWCNELVIASP-STKCELLAKVQETVLGSCAE-LAEEFLESVLSLAHDSNMEVRKQVVAFVEQVCKV--KVELLPH   90 (257)
T ss_dssp             HHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTTTTGG-GHHHHHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHH
T ss_pred             HHHHHHHHHhhhcCc-HHHHHHHHHHHHHHHccCHh-HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence            334444444433333 45555555555544333333 3445555555555555555555555555555432  1223344


Q ss_pred             hHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc-cCCC-ccHHHHHHHHHHHHhhhhhHHHHHHh
Q 016814          271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS-KDRV-PNIKFNVAKVLQSLIPIVDQSMVEKT  348 (382)
Q Consensus       271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l-~d~~-~~vR~~a~~~l~~i~~~~~~~~~~~~  348 (382)
                      +++.+..++.|++..+...++.+...+.             |.+++.. .+++ ..--..+...+             ..
T Consensus        91 ~l~~L~~Ll~d~d~~V~K~~I~~~~~iY-------------~~~l~~i~~~~~~~~~~~~~W~~m-------------~~  144 (257)
T 3gs3_A           91 VINVVSMLLRDNSAQVIKRVIQACGSIY-------------KNGLQYLCSLMEPGDSAEQAWNIL-------------SL  144 (257)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHH-------------HHHHHHHTTSSSCCHHHHHHHHHH-------------HH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHH-------------HHHHHHHhcCCCCcchHHHHHHHH-------------HH
Confidence            5555555555555544444444443322             1111111 1111 10111222222             23


Q ss_pred             HHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          349 IRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       349 i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      +...+..+....+..||..+.+.+..+.-+..
T Consensus       145 lK~~Il~~~~s~n~gvkl~~iKF~e~vIl~qT  176 (257)
T 3gs3_A          145 IKAQILDMIDNENDGIRTNAIKFLEGVVVLQS  176 (257)
T ss_dssp             HHHHHHHGGGSSCHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHccCCcchHHHHHHHHHHHHHhhc
Confidence            44444455555677899999998888876543

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=96.56  E-value=0.18  Score=39.03  Aligned_cols=142  Identities=13%  Similarity=0.117  Sum_probs=88.8

Q ss_pred             HHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhc------CCCchHHHHHHHHhHHHHhh--hchhhhHHHHHHHHHHH
Q 016814          168 DVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAE------DRHWRVRLAIIEYIPLLASQ--LGVGFFDDKLGALCMQW  239 (382)
Q Consensus       168 ~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~------d~~~~vr~~~~~~l~~l~~~--~~~~~~~~~l~~~l~~~  239 (382)
                      ..|..+..++..=   -|    .+.++|.+.+...      -.++..-...++....+...  +.-+.+..+++|.+..+
T Consensus        23 ~~r~~aL~sL~~D---~g----L~~LlPyf~~fI~~~v~~nl~~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtC   95 (196)
T 4atg_A           23 DMKDIAIECLEKE---SG----LQQLVPYFIQHISELILKSFKEAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTC   95 (196)
T ss_dssp             TTHHHHHHHHHHC---SS----CTTTHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC---CC----hhhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence            4466655555431   12    2556666655432      22445445555555555542  23455667888888876


Q ss_pred             hccc---hhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcc--hHHHHHHHHHHHHhccccChhhhhhhhHH
Q 016814          240 LQDK---VYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH--YLYRMTILRAISLLAPVMGSEITCSRLLP  312 (382)
Q Consensus       240 l~d~---~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~--~~~r~~a~~~l~~l~~~~~~~~~~~~~l~  312 (382)
                      +-..   ...+|+-|++.++.++..+|..  .....+...+...+.|++  ......|+..+..++    .+....-++|
T Consensus        96 ll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k~l~dp~~~l~t~YGAi~GL~~lG----~~~vr~~llP  171 (196)
T 4atg_A           96 VIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKGVWMDPNRSEDSQYGALYCLSILS----KNVVNTVIRE  171 (196)
T ss_dssp             HHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC----HHHHHTHHHH
T ss_pred             HHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHhH----HHHHHHhhhc
Confidence            5221   1289999999999999999873  356677777777777754  667777777776655    4545556668


Q ss_pred             HHHhhccC
Q 016814          313 VVINASKD  320 (382)
Q Consensus       313 ~l~~~l~d  320 (382)
                      .+-...++
T Consensus       172 ~l~~~~~~  179 (196)
T 4atg_A          172 HAEEYKRT  179 (196)
T ss_dssp             HHHHHHHH
T ss_pred             CHHHHHHH
Confidence            77666543

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=96.56  E-value=0.33  Score=42.07  Aligned_cols=127  Identities=19%  Similarity=0.254  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHH
Q 016814           13 VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVR   92 (382)
Q Consensus        13 vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR   92 (382)
                      .|...+.-...++-+-.+ ...+.+++-+.++..|++..+|+.++..|...+..  .......+++.+..+++|+++.|.
T Consensus        41 ~Kl~~L~q~~EL~l~~dp-sLl~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~--~~el~~~~l~~L~~LL~d~d~~V~  117 (386)
T 3o2t_A           41 SKITVLKQVQELIINKDP-TLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKR--DIELLLKLIANLNMLLRDENVNVV  117 (386)
T ss_dssp             HHHHHHHHHHHHHHTTCG-GGGGGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTCSSHHHH
T ss_pred             HHHHHHHHHHHHHhccCH-HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHcCCCHHHH
Confidence            466666666666554333 46678888899999999999999999999998863  222335678888899999999999


Q ss_pred             HHHHHHHHHHHHhh------CH-------H--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc
Q 016814           93 IAAAGKVTKFCRIL------NP-------E--LAIQHILPCVKELSSDSSQHVRSALASVIMGMA  142 (382)
Q Consensus        93 ~~a~~~l~~l~~~~------~~-------~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~  142 (382)
                      +.++.+...+-+..      .+       +  .....+-..+.....+.+..||..+++.+..+.
T Consensus       118 K~~I~~~tslYpl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~n~GVrl~aiKFle~VI  182 (386)
T 3o2t_A          118 KKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSDNDGIRTHAIKFVEGLI  182 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHH
Confidence            99998887765321      11       1  111233344444567788999999999888764

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.14  E-value=0.5  Score=39.79  Aligned_cols=186  Identities=12%  Similarity=0.051  Sum_probs=110.6

Q ss_pred             ccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH------HH--HHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           73 RMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE------LA--IQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        73 ~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~------~~--~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      ...++..++..+..=+.+.|+-+...+..+.+.-...      ..  ...++..+....++++...-  +-..+...++.
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~--~G~mLRecir~  153 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALN--CGIMLRECIRH  153 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHH--HHHHHHHHHTS
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhH--HHHHHHHHHHh
Confidence            3467888888888888999999999998887643211      11  12355555555554433211  11111111110


Q ss_pred             --cChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hh----hHhhhHHHHHHHHhcCCCchHHHHHHHH
Q 016814          145 --LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---ID----LLSQSLLPAIVELAEDRHWRVRLAIIEY  215 (382)
Q Consensus       145 --~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~----~~~~~llp~l~~~~~d~~~~vr~~~~~~  215 (382)
                        +......+..+--+.+.+..++.++-..+...+..+.....   .+    .+ +.+...+.+++.++|+-+|+..++.
T Consensus       154 e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~ny-d~Ff~~y~~Ll~S~NYVTkRQSlKL  232 (341)
T 1upk_A          154 EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHY-DRFFSEYEKLLHSENYVTKRQSLKL  232 (341)
T ss_dssp             HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTH-HHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhH-HHHHHHHHHHhcCCcchhHHHHHHH
Confidence              00011112222334457777788888877777766543211   11    12 3456667778888888899999988


Q ss_pred             hHHHHhhhch-hhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814          216 IPLLASQLGV-GFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       216 l~~l~~~~~~-~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                      |+.+.-.-.. ...     .+.-+..++.+|+|++..++-.|.+.+.-++.+
T Consensus       233 LgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          233 LGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            8887643221 111     145677788888888888888888888877754

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=95.90  E-value=0.29  Score=39.08  Aligned_cols=131  Identities=9%  Similarity=-0.013  Sum_probs=87.5

Q ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhH
Q 016814           39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAIQHILP  117 (382)
Q Consensus        39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~  117 (382)
                      .++.++...+..+.|..++..++.....+.+     .-++.+-..+. -++|.+-...+.+++.+....+     ..+.+
T Consensus        58 ~~~~~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~~-----~~~~~  127 (220)
T 2b6c_A           58 QEIEAYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALHL-----TELPT  127 (220)
T ss_dssp             HHHHHHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHSG-----GGHHH
T ss_pred             HHHHHHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHCh-----HHHHH
Confidence            4556666667788898888888765433222     23444444443 3568877766666666654321     23557


Q ss_pred             hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       118 ~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      .+.+.+.|++..+|+.++...-..    ..+...+.+++++...+.|++.-|+.++..+|..++..
T Consensus       128 ~i~~W~~s~~~w~rR~ai~~~l~~----~~~~~~~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          128 IFALFYGAENFWNRRVALNLQLML----KEKTNQDLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HHHHHTTCSSHHHHHHHHHTTTTC----GGGCCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHH----HHCCCHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            788889999999888887744222    12223466778888889999999999999999888765

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=95.41  E-value=0.13  Score=37.72  Aligned_cols=74  Identities=9%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhh----hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT----CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~----~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      ...+..+...++++++.+...|+..+..+.+++|..+.    ...++..+.+.+...++.||..++..+..+...+..
T Consensus        41 k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~~f~~  118 (140)
T 3ldz_A           41 KDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTDEFKN  118 (140)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCC
Confidence            34666777777888888888888888888888886522    245666666666666778999999988888877654

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=95.35  E-value=0.86  Score=36.63  Aligned_cols=131  Identities=9%  Similarity=-0.002  Sum_probs=84.1

Q ss_pred             hhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHH-HHHHHHHHHhhCHHHHHHhhh
Q 016814           39 PVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAA-AGKVTKFCRILNPELAIQHIL  116 (382)
Q Consensus        39 ~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~~VR~~a-~~~l~~l~~~~~~~~~~~~il  116 (382)
                      .++.++.+++..+.|..++..+....+.+.++     -++.+..++ ..++|.+-... ...++.+...- +    ....
T Consensus        64 ~~~~~L~~~~~~E~r~~ai~~l~~~~k~~~~~-----~l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-p----~~~~  133 (232)
T 3jxy_A           64 IIIRELWDLPEREFQAAALDIMQKYKKHINET-----HIPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-P----ELIS  133 (232)
T ss_dssp             HHHHHHHTSSBHHHHHHHHHHHHHTGGGCCGG-----GHHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-G----GGGG
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHHHHhCCHH-----HHHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-H----HHHH
Confidence            35556666677778888888876543333222     233333333 34568765554 35556655431 1    2366


Q ss_pred             HhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       117 ~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      +.+.+...|++..+|+.++..+-...    .+...+.+++.+...+.|++.-|+.++..+|..++..
T Consensus       134 ~~l~~W~~s~~~w~rR~ai~~~l~~~----~~~d~~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~  196 (232)
T 3jxy_A          134 AYIPKWIASDNIWLQRAAILFQLKYK----QKMDEELLFWIIGQLHSSKEFFIQKAIGWVLREYAKT  196 (232)
T ss_dssp             GTHHHHHHSSCHHHHHHHHHTTTTCG----GGCCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhcCCchHHHHHHHHHHHHHH----hCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence            78888899999999888876542221    1122346777888889999999999999999888765

>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}

Probab=95.21  E-value=0.79  Score=35.45  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=78.7

Q ss_pred             hhHHHHHHHHHHHHHHHH--hChHHHHhhhHHHHHhhhcCcc---hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHh
Q 016814          244 VYSIRDAAANNLKRLAEE--FGPEWAMQHITPQVLEMINNPH---YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVIN  316 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~--~~~~~~~~~l~~~l~~~l~~~~---~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~  316 (382)
                      +...-....+....+..+  +.-+.+..+++|.++..+-.++   ...|+.|+..++.++..++..  .....+...+.+
T Consensus        59 ~l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI~~tl~k  138 (196)
T 4atg_A           59 EAEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRVLKTLKG  138 (196)
T ss_dssp             CHHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHHHHHHHH
Confidence            444445555566666543  2236677889998888764322   279999999999999998864  456788888888


Q ss_pred             hccCCCc--cHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC
Q 016814          317 ASKDRVP--NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED  359 (382)
Q Consensus       317 ~l~d~~~--~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d  359 (382)
                      .+.|++.  .....|+..|..+    |++.....++|.+....++
T Consensus       139 ~l~dp~~~l~t~YGAi~GL~~l----G~~~vr~~llP~l~~~~~~  179 (196)
T 4atg_A          139 VWMDPNRSEDSQYGALYCLSIL----SKNVVNTVIREHAEEYKRT  179 (196)
T ss_dssp             HHTCTTSCHHHHHHHHHHHHHH----CHHHHHTHHHHHHHHHHHH
T ss_pred             HHcCCCCChHHHHHHHHHHHHh----HHHHHHHhhhcCHHHHHHH
Confidence            8888654  4777777777766    4555667778888877654

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=94.49  E-value=0.23  Score=37.41  Aligned_cols=73  Identities=8%  Similarity=0.075  Sum_probs=50.0

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC-CCccHHHHHHHHHHHHhhhhhH
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIPIVDQ  342 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~~~~~  342 (382)
                      ..+..+...++++++.+...|+..+..+.++||..+    ....++..+.+.+.. .++.||..++..+..+...++.
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            355566667777777777788888888888887642    124455555555543 4567888888888888877664

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=94.42  E-value=0.41  Score=34.99  Aligned_cols=98  Identities=9%  Similarity=0.165  Sum_probs=65.7

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~  120 (382)
                      ..++||..=...|..+..     ++ ....+.+..+.+.+++.++.+...|+..+..+.+.+|.....    ..++..+.
T Consensus        18 l~~~dw~~ileicD~I~~-----~~-~~~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~   91 (140)
T 3ldz_A           18 NTAEDWGLILDICDKVGQ-----SR-TGPKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVS   91 (140)
T ss_dssp             SSSCCHHHHHHHHHHHTT-----ST-THHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHC-----CC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHH
Confidence            356677665555555431     11 122456777778888889999999999999999988876331    23445555


Q ss_pred             hhcCCCchHHHHHHHHHHHhhccccChH
Q 016814          121 ELSSDSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       121 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      .+++..++.||..+...+..++..++.+
T Consensus        92 ~l~~~~~~~Vk~kil~li~~W~~~f~~~  119 (140)
T 3ldz_A           92 NVLNKGHPKVCEKLKALMVEWTDEFKND  119 (140)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence            5555567788888888888887666543

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=94.32  E-value=0.89  Score=33.50  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=52.3

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhhh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~~  339 (382)
                      ..+..+...++++++.+...|+..+..+.++||..+    ....++..+.+.+.+      .++.||..++..+..+...
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  117 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355566667778888888888888888888888642    235666667776654      2567888888888888877


Q ss_pred             hhH
Q 016814          340 VDQ  342 (382)
Q Consensus       340 ~~~  342 (382)
                      ++.
T Consensus       118 f~~  120 (148)
T 1mhq_A          118 FPE  120 (148)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            754

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=94.26  E-value=0.48  Score=34.99  Aligned_cols=98  Identities=11%  Similarity=0.078  Sum_probs=69.4

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCV  119 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l  119 (382)
                      ...++||..=...|..+..     .+ ....+.+..+...+++.++.+...|+..+..+.+.+|...+    ...++..+
T Consensus        23 ~l~~~dw~~ileicD~I~~-----~~-~~pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL   96 (149)
T 3g2s_A           23 LNKELDWASINGFCEQLNE-----DF-EGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNEL   96 (149)
T ss_dssp             TCSSCCHHHHHHHHHHGGG-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHC-----CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHH
Confidence            3355677665555555431     11 22345677888888899999999999999999999987632    23456666


Q ss_pred             hhhcCC------CchHHHHHHHHHHHhhccccCh
Q 016814          120 KELSSD------SSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       120 ~~~~~d------~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .+++.+      .++.||..+...+..++..++.
T Consensus        97 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  130 (149)
T 3g2s_A           97 IKVVSPKYLGSRTSEKVKNKILELLYSWTVGLPE  130 (149)
T ss_dssp             HHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHcccccCCCCCHHHHHHHHHHHHHHHHHhCC
Confidence            667654      4678999999999998877654

>2b6c_A Hypothetical protein EF3068; structural genomis, DNA repair enzyme, structural genomics, protein structure initiative; HET: SO4; 2.10A {Enterococcus faecalis} SCOP: a.118.1.17

Probab=93.99  E-value=1.4  Score=35.09  Aligned_cols=127  Identities=6%  Similarity=-0.046  Sum_probs=85.8

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      .|...+.-+.|..|+..++...+...+     .-++.+..++. -++|.+--..+.+++.+...-     ...+.+.+.+
T Consensus        62 ~L~~s~~~E~r~la~~~l~~~~~~~~~-----~~l~~~~~~l~~~~nWd~~D~~a~~~~~~~~~~-----~~~~~~~i~~  131 (220)
T 2b6c_A           62 AYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTIFAL  131 (220)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHHHHH
T ss_pred             HHHcCchhHHHHHHHHHHHHHHhhCCH-----HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHC-----hHHHHHHHHH
Confidence            344455666777777777665443332     33445555554 567888777776677766431     2336788888


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL  144 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~  144 (382)
                      ...|++.-+|..|+.++....+.-..    ..+++.+...+.|++..||.+...+|..+...
T Consensus       132 W~~s~~~w~rR~ai~~~l~~~~~~~~----~~~~~i~~~~~~d~~~yV~kavgW~Lr~~~k~  189 (220)
T 2b6c_A          132 FYGAENFWNRRVALNLQLMLKEKTNQ----DLLKKAIIYDRTTEEFFIQKAIGWSLRQYSKT  189 (220)
T ss_dssp             HTTCSSHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHTTTCCCHHHHHHHHHHHHHHTTT
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHCCCH----HHHHHHHHHhCCChHHHHHHHHHHHHHHHHhh
Confidence            99999887777777765433332222    35577777799999999999999999999865

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.82  E-value=2.7  Score=35.49  Aligned_cols=181  Identities=10%  Similarity=0.073  Sum_probs=115.1

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chh-----hh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH-
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE-  261 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~-  261 (382)
                      +.++..+...+..=++..|+.+...+..+...- |..     .+  .+.++..+.....+++-..      ..|.+... 
T Consensus        77 ~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl------~~G~mLRec  150 (341)
T 1upk_A           77 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLREC  150 (341)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHH
T ss_pred             hCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHh------HHHHHHHHH
Confidence            556667777777778888888888887776422 211     11  1456666666666554321      11111111 


Q ss_pred             hChHHH-----HhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC---hhh---hhhhhHHHHHhhccCCCccHHHHHH
Q 016814          262 FGPEWA-----MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEI---TCSRLLPVVINASKDRVPNIKFNVA  330 (382)
Q Consensus       262 ~~~~~~-----~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~---~~~~~l~~l~~~l~d~~~~vR~~a~  330 (382)
                      ...+.+     ....+-.+.+....++..+-.-|...+..+.....   .++   -.+.++..+-+++.++|+-+|..++
T Consensus       151 ir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          151 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            111211     12233356677788888887777777777654322   111   2345677777899999999999999


Q ss_pred             HHHHHHhhhhhHH-----HH-HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          331 KVLQSLIPIVDQS-----MV-EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       331 ~~l~~i~~~~~~~-----~~-~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +.|+.+...=.+-     ++ ...-+..+-.++.|+...++..|...+..++.
T Consensus       231 KLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence            9999997643221     11 14556677778999999999999999988764

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=93.57  E-value=0.67  Score=34.20  Aligned_cols=73  Identities=7%  Similarity=-0.023  Sum_probs=52.1

Q ss_pred             hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHHHHhcCC------CCccHHhHHHHHHHHHHHH
Q 016814          309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVELTED------PDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~d------~~~~vr~~a~~al~~~~~~  378 (382)
                      ..+..+.+.++++++++...|+..|..+.+..|...    ....++..|.+++.+      ++.+||......+..++..
T Consensus        48 ~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  127 (149)
T 3g2s_A           48 LATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVG  127 (149)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHH
Confidence            455566677778888888888888888888777543    235666777776654      4667888888888888776


Q ss_pred             hcc
Q 016814          379 MMS  381 (382)
Q Consensus       379 ~~~  381 (382)
                      ++.
T Consensus       128 f~~  130 (149)
T 3g2s_A          128 LPE  130 (149)
T ss_dssp             CTT
T ss_pred             hCC
Confidence            653

>3jxy_A Alkylpurine DNA glycosylase ALKD; heat repeat, DNA binding, DNA glycosylase, DNA alkylation, L complex, hydrolase-DNA complex; HET: DNA; 1.50A {Bacillus cereus} SCOP: a.118.1.0 PDB: 3jx7_A* 3bvs_A 3jy1_A* 3jxz_A*

Probab=93.46  E-value=1.6  Score=34.98  Aligned_cols=154  Identities=10%  Similarity=0.061  Sum_probs=91.6

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc-cCCCHHHHHHH-HHHHHHHHHHhCCcccccchHHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS-QDKSWRVRYMV-ANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~-~d~~~~vR~~a-~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      .|..++..+.|..|+..+....+.+.++.     ++.+..++ ..++|.+--.. ...++.+...-     .....+.+.
T Consensus        68 ~L~~~~~~E~r~~ai~~l~~~~k~~~~~~-----l~~~~~~l~~~~nWd~~D~~a~~~~g~~~~~~-----p~~~~~~l~  137 (232)
T 3jxy_A           68 ELWDLPEREFQAAALDIMQKYKKHINETH-----IPFLEELIVTKSWWDSVDSIVPTFLGDIFLKH-----PELISAYIP  137 (232)
T ss_dssp             HHHTSSBHHHHHHHHHHHHHTGGGCCGGG-----HHHHHHHHTSSCCHHHHHHHTTTHHHHHHHHC-----GGGGGGTHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHccCCChHHHHHhhHHHHHHHHHHC-----HHHHHHHHH
Confidence            34555556677777766654444343322     22333333 35677775555 35666666541     122567777


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      +...|++.-+|..|+..+.........    ..+++.+...+.|++..||.+...+|..+....+     +.+.+++.+-
T Consensus       138 ~W~~s~~~w~rR~ai~~~l~~~~~~d~----~~~~~~i~~~~~d~~~yV~kAvgW~Lr~~~k~~p-----~~v~~fl~~~  208 (232)
T 3jxy_A          138 KWIASDNIWLQRAAILFQLKYKQKMDE----ELLFWIIGQLHSSKEFFIQKAIGWVLREYAKTNP-----DVVWEYVQNN  208 (232)
T ss_dssp             HHHHSSCHHHHHHHHHTTTTCGGGCCH----HHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTTCH-----HHHHHHHHHS
T ss_pred             HHhcCCchHHHHHHHHHHHHHHhCCCH----HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhCH-----HHHHHHHHHC
Confidence            888888877777776655333222222    2456677788999999999999999999986532     3455555543


Q ss_pred             hcCCChHHHHHHHHhhH
Q 016814          162 LKDEFPDVRLNIISKLD  178 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~  178 (382)
                        .-++-.++.+++.+.
T Consensus       209 --~l~~~~~r~A~k~l~  223 (232)
T 3jxy_A          209 --ELAPLSKREAIKHIK  223 (232)
T ss_dssp             --CCCHHHHHHHTTTTH
T ss_pred             --CCCHHHHHHHHHhcc
Confidence              223455555555554

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=92.89  E-value=2.1  Score=31.53  Aligned_cols=99  Identities=5%  Similarity=-0.049  Sum_probs=70.7

Q ss_pred             hhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHH
Q 016814          277 EMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPC  352 (382)
Q Consensus       277 ~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~  352 (382)
                      +.+..++|..=...+..+..=.  -    --...+..+.+.++++++++...|+..|..+....|...    ....++..
T Consensus        12 ~~l~~~dw~~~leicD~I~~~~--~----~~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~e   85 (148)
T 1mhq_A           12 PSMSEQDWSAIQNFCEQVNTDP--N----GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNE   85 (148)
T ss_dssp             TTCSSCCHHHHHHHHHHHHHSS--H----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHHcCC--c----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHH
Confidence            3445677865444444443311  1    223455667777889999999999999999999988653    23678888


Q ss_pred             HHHhcCC------CCccHHhHHHHHHHHHHHHhcc
Q 016814          353 LVELTED------PDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       353 l~~l~~d------~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      |.++..+      .+.+||..+...+..++..++.
T Consensus        86 L~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  120 (148)
T 1mhq_A           86 LIKVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (148)
T ss_dssp             HHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            8887764      4778999999999999987754

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=92.84  E-value=1.1  Score=33.88  Aligned_cols=73  Identities=15%  Similarity=0.131  Sum_probs=48.4

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhhh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~~  339 (382)
                      ..+..+...+++++..+...|+..+..+.++||..+    ....++..+.+.+..      .+..||..+++.+..+...
T Consensus        50 ~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           50 IAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345556666677777777777777777777777542    224456666665542      2456888888888888877


Q ss_pred             hhH
Q 016814          340 VDQ  342 (382)
Q Consensus       340 ~~~  342 (382)
                      ++.
T Consensus       130 f~~  132 (171)
T 1juq_A          130 LPE  132 (171)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            764

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=92.75  E-value=1  Score=33.77  Aligned_cols=96  Identities=11%  Similarity=0.161  Sum_probs=66.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhhh
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVKE  121 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~~  121 (382)
                      .++||..=...|..+..     .+ ....+.+..+.+.+++.++.|...|+..|..+.+.++....    ...++..+..
T Consensus        29 ~~~Dw~~~leicD~I~~-----~~-~~~keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~  102 (163)
T 1x5b_A           29 TTEDWSLIMDICDKVGS-----TP-NGAKDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRA  102 (163)
T ss_dssp             SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence            46777776666655542     11 12245677788888889999999999999999999987532    1234444545


Q ss_pred             hcCC-CchHHHHHHHHHHHhhccccCh
Q 016814          122 LSSD-SSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       122 ~~~d-~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      ++.. .++.||..+...+..+...++.
T Consensus       103 l~~~~~~~~Vk~kil~li~~W~~~f~~  129 (163)
T 1x5b_A          103 VIKNKAHPKVCEKLKSLMVEWSEEFQK  129 (163)
T ss_dssp             HHHTTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHccCCCHHHHHHHHHHHHHHHHHhcC
Confidence            4443 5678999998888888776654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=92.16  E-value=1.2  Score=35.56  Aligned_cols=72  Identities=19%  Similarity=0.261  Sum_probs=41.7

Q ss_pred             hhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHHhc
Q 016814          309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       309 ~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ..+..+.+-++++++++...|+..|..+.++.|...    ....++..|.+++. .++.+||..+...+..++..+.
T Consensus        45 ~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  121 (226)
T 3zyq_A           45 YAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR  121 (226)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            344455556666677777777777777766665432    12344444444432 2455677777777777766554

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=91.87  E-value=9.5  Score=36.81  Aligned_cols=112  Identities=20%  Similarity=0.158  Sum_probs=69.4

Q ss_pred             hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHHHhcCC---CcHHHHHHHHHHHHHHHH
Q 016814           31 QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRD---NEAEVRIAAAGKVTKFCR  104 (382)
Q Consensus        31 ~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~l~d---~~~~VR~~a~~~l~~l~~  104 (382)
                      +.+...++|++......++..+...+..++..++. +.+   +.+.+.++..+...+..   .+++--.++++++..++.
T Consensus       334 ~~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~-l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r  412 (799)
T 1vsy_4          334 EEIVEIFLNIISLGSQNKNPDIANYYISCFAYLLE-LDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIR  412 (799)
T ss_dssp             HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHH-TCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHh-cCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence            34566788888888999999999999999999885 444   44444455555555555   567767778888888877


Q ss_pred             hhCHH-HHHHhhhHhhhh---hcCCCchHHHHHHHHHHHhhcc
Q 016814          105 ILNPE-LAIQHILPCVKE---LSSDSSQHVRSALASVIMGMAP  143 (382)
Q Consensus       105 ~~~~~-~~~~~il~~l~~---~~~d~~~~vr~~a~~~l~~l~~  143 (382)
                      .+-.. .+..++.|.+.-   .++-.++.--..+.+.+..++.
T Consensus       413 ~lv~~~~yr~hl~~lL~l~LpgID~ND~~KT~~tl~fi~~i~s  455 (799)
T 1vsy_4          413 FIVMDKLYRVHITNVLSMLVSKLDMNDTNLTSNLINGIVSIAA  455 (799)
T ss_dssp             HHTTSTTGGGHHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHhcCcccHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHH
Confidence            65332 122234444433   3333333333445555555543

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=91.66  E-value=1.6  Score=34.82  Aligned_cols=99  Identities=12%  Similarity=0.210  Sum_probs=67.5

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCV  119 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l  119 (382)
                      ...++||..=...+..+..     + .....+.+..+.+.+++.++.|...|+..|..+.+.+|....    ...++..+
T Consensus        20 ~~~~~dw~~ileicD~I~~-----~-~~~~k~a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l   93 (226)
T 3zyq_A           20 LLLETDWESILQICDLIRQ-----G-DTQAKYAVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEEL   93 (226)
T ss_dssp             TCSSCCHHHHHHHHHHHHT-----T-SSCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhC-----C-CccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHH
Confidence            3356677766666665541     1 222346788888888999999999999999999999887522    12344444


Q ss_pred             hhhcC-CCchHHHHHHHHHHHhhccccChH
Q 016814          120 KELSS-DSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       120 ~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      .++++ ..++.||..+...+..++..+..+
T Consensus        94 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  123 (226)
T 3zyq_A           94 KDLLKRQVEVNVRNKILYLIQAWAHAFRNE  123 (226)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            44443 355789999999888888766543

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=90.68  E-value=4.3  Score=30.65  Aligned_cols=98  Identities=7%  Similarity=-0.003  Sum_probs=69.3

Q ss_pred             hhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHH
Q 016814          278 MINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCL  353 (382)
Q Consensus       278 ~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l  353 (382)
                      .+..++|..=...+..+..=.  -    --...+-.+.+.++++++++...|+..|..+.+..|...    ....++..|
T Consensus        25 ~l~~~Dw~~ileicD~I~~~~--~----~~k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL   98 (171)
T 1juq_A           25 SNRQEDWEYIIGFCDQINKEL--E----GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL   98 (171)
T ss_dssp             TCSSCCHHHHHHHHHHHHHST--T----HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHcCC--c----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHH
Confidence            345667865444444443311  1    123455667788889999999999999999999888643    235677778


Q ss_pred             HHhcCC------CCccHHhHHHHHHHHHHHHhcc
Q 016814          354 VELTED------PDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       354 ~~l~~d------~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      .++...      .+.+||..+...+..++..++.
T Consensus        99 ~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~  132 (171)
T 1juq_A           99 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMALPE  132 (171)
T ss_dssp             HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHhccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            887652      4678999999999999987764

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=90.54  E-value=7  Score=32.84  Aligned_cols=134  Identities=14%  Similarity=0.222  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHHHHHHHhh-CHHHHHHhhhHhhhhh-cC--------CCchHHHHHHHHHHHhhccccChHh--HHHhhHH
Q 016814           89 AEVRIAAAGKVTKFCRIL-NPELAIQHILPCVKEL-SS--------DSSQHVRSALASVIMGMAPLLGKDA--TIEQLLP  156 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~-~~~~~~~~il~~l~~~-~~--------d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~  156 (382)
                      ..||+..++.+..+.+.. ..+.+.+.++|.+.+. +.        -.+++|-......+..+...+.+..  ..+.++.
T Consensus        43 R~vKkeiLkLiet~i~~~~d~~~v~~~~ippLl~~VL~DY~~~vp~aRepeVL~l~~tii~kl~~~i~~~vp~Il~~VFe  122 (321)
T 1w9c_A           43 RTVKRETLKLISGWVSRSNDPQMVAENFVPPLLDAVLIDYQRNVPAAREPEVLSTMAIIVNKLGGHITAEIPQIFDAVFE  122 (321)
T ss_dssp             HHHHHHHHHHHHHHHTTCSCHHHHHHHTHHHHHHHHHHHHHTSCGGGCCTHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence            456666666666666543 3344556666666542 21        1346677777777777766555432  2344455


Q ss_pred             HHHHhhcC---CChHHHHHHHHhhHHhhhh-------hchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh
Q 016814          157 IFLSLLKD---EFPDVRLNIISKLDQVNQV-------IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL  223 (382)
Q Consensus       157 ~l~~~l~d---~~~~vr~~~~~~l~~~~~~-------~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~  223 (382)
                      .-.+++++   +.|+.|.+..+-+..+...       ++++.+ ..++..+...++++...|-..++..+..+...+
T Consensus       123 ~TL~MI~~df~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~  198 (321)
T 1w9c_A          123 CTLNMINKDFEEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNV  198 (321)
T ss_dssp             HHHHHHSSTTTCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcccccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence            55566664   5799999988888776543       344444 566777777777877777777777776666555

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=89.40  E-value=1.2  Score=32.27  Aligned_cols=102  Identities=13%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             hhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH--HhhhH
Q 016814           40 VIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI--QHILP  117 (382)
Q Consensus        40 ~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~--~~il~  117 (382)
                      .+.+..+|.+|-.--....-|.++......+ ...++++.+.+.+++.++.|...|++.|..++..-+.....  ..-..
T Consensus        15 ~V~~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~   93 (140)
T 1vdy_A           15 MIDAVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSV   93 (140)
T ss_dssp             HHHHTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTH
T ss_pred             HHHHHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHH
Confidence            3566777777666666666666655332212 23678999999999999999999999999998766554211  11112


Q ss_pred             hhhhhc-----------CCCchHHHHHHHHHHHhhc
Q 016814          118 CVKELS-----------SDSSQHVRSALASVIMGMA  142 (382)
Q Consensus       118 ~l~~~~-----------~d~~~~vr~~a~~~l~~l~  142 (382)
                      .+..+.           +|....||..|-+++..+.
T Consensus        94 ~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~  129 (140)
T 1vdy_A           94 AVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF  129 (140)
T ss_dssp             HHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            222222           1223578888877766554

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=89.22  E-value=4.6  Score=28.85  Aligned_cols=93  Identities=14%  Similarity=0.106  Sum_probs=51.0

Q ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhh
Q 016814          231 KLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRL  310 (382)
Q Consensus       231 ~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~  310 (382)
                      .++|-+...++|.+|.+....+..+..+-         +.++|.+.+.+.+.+..   --...+..+...+..+ ....+
T Consensus        31 p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~---W~ywil~~lv~~~~~~-~~~~l   97 (134)
T 3ut4_A           31 PIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIM---WKYWVIKLMIPYLIYP-NKQLV   97 (134)
T ss_dssp             HHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHH---HHHHHHHHHGGGCCHH-HHHHH
T ss_pred             HHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChH---HHHHHHHHHHHcCCHH-HHHHH
Confidence            46666677777777777666666555432         23555555555433321   1334455555555554 45566


Q ss_pred             HHHHHhhccCCCc-----cHHHHHHHHHHHH
Q 016814          311 LPVVINASKDRVP-----NIKFNVAKVLQSL  336 (382)
Q Consensus       311 l~~l~~~l~d~~~-----~vR~~a~~~l~~i  336 (382)
                      .|.+.++...+..     .+...|-+.|..+
T Consensus        98 ~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~  128 (134)
T 3ut4_A           98 KSELERLSSLEIINEDIREIVNLSKDYLHFY  128 (134)
T ss_dssp             HHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            6777776665522     2445555555444

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=88.33  E-value=13  Score=32.93  Aligned_cols=249  Identities=11%  Similarity=0.130  Sum_probs=135.2

Q ss_pred             CCcHHHHHHHHHHHHHHHHh--hC----HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-cChH-hHHHhhHHH
Q 016814           86 DNEAEVRIAAAGKVTKFCRI--LN----PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPL-LGKD-ATIEQLLPI  157 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~--~~----~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-~~~~-~~~~~l~~~  157 (382)
                      |++|.=-..+.+.+..+...  +.    +..+...++-.+.+++.++++.=|......++.+-.. .+.. .....+-..
T Consensus       128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni  207 (449)
T 2npp_B          128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  207 (449)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777788888877653  22    2233345777788899999999999998888776433 3322 223444455


Q ss_pred             HHHhhcC-CChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHHH
Q 016814          158 FLSLLKD-EFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDKL  232 (382)
Q Consensus       158 l~~~l~d-~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~l  232 (382)
                      +..++.+ +...--...++.++.+......   +.....+...+..+.+.+.... ...+..++..+.+. ++... ..+
T Consensus       208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK-Dp~L~-~~v  285 (449)
T 2npp_B          208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLT-EPV  285 (449)
T ss_dssp             HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH-CGGGH-HHH
T ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc-CcHhH-HHH
Confidence            5555433 2222233455555555544321   1111223333444444444322 23444455444432 22222 233


Q ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHH--hccccChhhhh
Q 016814          233 GALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISL--LAPVMGSEITC  307 (382)
Q Consensus       233 ~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~~~~~~  307 (382)
                      +..+.+..--.+..-...-+.-+..+.+..+++.+..   .++..+...+.+++..|-+.|+.....  +...+.  ...
T Consensus       286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~  363 (449)
T 2npp_B          286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA  363 (449)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence            3334333322233333345667777777777766543   455666778889999998888754422  111111  123


Q ss_pred             hhhHHHHHhh-----ccCCCccHHHHHHHHHHHHhh
Q 016814          308 SRLLPVVINA-----SKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       308 ~~~l~~l~~~-----l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      ..++|.+...     -++.+..||..+..++..+.+
T Consensus       364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            3455555443     345677899999999986654

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=88.26  E-value=3.9  Score=30.39  Aligned_cols=96  Identities=13%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChhh----hhhhhHHH-
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPV-  313 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~-  313 (382)
                      +.+++|..-...+..+..     +.. -....+..+...++ ++++.+...|+..+..+.++||..+    ....++.. 
T Consensus        29 l~~~Dw~~~leicD~I~~-----~~~-~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~  102 (157)
T 1elk_A           29 LQSEDWALNMEICDIINE-----TEE-GPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESV  102 (157)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----SSS-HHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhC-----CCc-cHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHH
Confidence            345677664444443322     111 12346667777787 5788899999999999999999752    23446665 


Q ss_pred             HHhhcc---CCCccHHHHHHHHHHHHhhhhh
Q 016814          314 VINASK---DRVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       314 l~~~l~---d~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      +.+.+.   ++...||..+++.+..+...++
T Consensus       103 Lvk~~~~k~~~~~~Vk~kil~li~~W~~~f~  133 (157)
T 1elk_A          103 LVRTILPKNNPPTIVHDKVLNLIQSWADAFR  133 (157)
T ss_dssp             THHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            555553   3345799999999999988765

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=88.18  E-value=8.3  Score=30.49  Aligned_cols=69  Identities=9%  Similarity=0.079  Sum_probs=36.9

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC-CCccHHHHHHHHHHHHhh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD-RVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~~i~~  338 (382)
                      ..+..+...+.++++.+...|+..+..+.+++|..+    ....++..+.+.+++ .+..||..+++.+..+..
T Consensus        42 ~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (220)
T 1dvp_A           42 NAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (220)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            455555566666666666666666666666665432    123455555555443 234455555555555543

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=87.86  E-value=13  Score=32.36  Aligned_cols=252  Identities=10%  Similarity=0.111  Sum_probs=135.9

Q ss_pred             CCCcHHHHHHHHHHHHHHHHh--hCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc-ChH-hHHHhhHH
Q 016814           85 RDNEAEVRIAAAGKVTKFCRI--LNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL-GKD-ATIEQLLP  156 (382)
Q Consensus        85 ~d~~~~VR~~a~~~l~~l~~~--~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~-~~~-~~~~~l~~  156 (382)
                      .|++|.=-..+.+.+..+...  +.+.    .+...++-.+..++.++++.=|......+..+-..+ +.. .....+-.
T Consensus        94 ~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inn  173 (403)
T 3fga_B           94 LEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINN  173 (403)
T ss_dssp             CCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             cccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            356788778888888887664  2333    122346677888999999999999988888765332 221 12233444


Q ss_pred             HHHHhhcCC-ChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchH-HHHHHHHhHHHHhhhchhhhHHH
Q 016814          157 IFLSLLKDE-FPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRV-RLAIIEYIPLLASQLGVGFFDDK  231 (382)
Q Consensus       157 ~l~~~l~d~-~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~v-r~~~~~~l~~l~~~~~~~~~~~~  231 (382)
                      .+..++.+. ...--...+..++.+......   +.-...+...+..+.+.++... ...+..++.++.+. ++... ..
T Consensus       174 if~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK-Dp~L~-~~  251 (403)
T 3fga_B          174 IFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK-DSTLT-EP  251 (403)
T ss_dssp             HHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH-CGGGH-HH
T ss_pred             HHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh-CchhH-HH
Confidence            455544332 222223455556665554321   1111223333444444444321 23444555554432 22222 23


Q ss_pred             HHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHh---hhHHHHHhhhcCcchHHHHHHHHHHHH--hccccC--hh
Q 016814          232 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ---HITPQVLEMINNPHYLYRMTILRAISL--LAPVMG--SE  304 (382)
Q Consensus       232 l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~---~l~~~l~~~l~~~~~~~r~~a~~~l~~--l~~~~~--~~  304 (382)
                      ++..+.+..--.+..-...-+.-+..+.+..+++.+..   .++..+...+.+++..|-+.|+.....  +...+.  ..
T Consensus       252 vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~~n~~  331 (403)
T 3fga_B          252 VVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAA  331 (403)
T ss_dssp             HHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHHTTHH
T ss_pred             HHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHHHhHH
Confidence            33333333322333333345566777777777765543   455566677889999998888755422  111111  11


Q ss_pred             hhhhhhHHHHHhh-ccCCCccHHHHHHHHHHHHhh
Q 016814          305 ITCSRLLPVVINA-SKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       305 ~~~~~~l~~l~~~-l~d~~~~vR~~a~~~l~~i~~  338 (382)
                      .....++|.+.+. -++.+..||..+..++..+.+
T Consensus       332 ~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          332 KILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             HHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            2344455555443 456678899999999988754

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=87.22  E-value=6  Score=28.61  Aligned_cols=68  Identities=15%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             HHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHH
Q 016814          197 IVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEW  266 (382)
Q Consensus       197 l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~  266 (382)
                      +.+...+++|..-...+..+..+......+ +...+++.+.+.|++.++.++..|+..|..++.. |.+.
T Consensus        16 V~~ATs~d~~~~pgylm~EIA~~T~~s~~~-~~~eim~~L~kRL~~k~~~vk~KaL~lL~yL~~~-Gs~~   83 (140)
T 1vdy_A           16 IDAVTSDEDKVAPVYKLEEICDLLRSSHVS-IVKEFSEFILKRLDNKSPIVKQKALRLIKYAVGK-SGSE   83 (140)
T ss_dssp             HHHTTCSCSSCCCHHHHHHHHHHHHHSCHH-HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHTTT-SCHH
T ss_pred             HHHHhcCCCCCCcHHHHHHHHHHHHhcchh-HHHHHHHHHHHHhcCCCcceeehHHHHHHHHHHh-CCHH
Confidence            455667777776666666666665433223 2357899999999999999999999999998874 4443

>3ut4_A CTHE_2751, putative uncharacterized protein; non PFAM singleton, helical fold, unknown function; 2.03A {Clostridium thermocellum} PDB: 3ut8_A 3ut7_A

Probab=87.10  E-value=6.2  Score=28.22  Aligned_cols=99  Identities=8%  Similarity=0.004  Sum_probs=59.3

Q ss_pred             chhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh
Q 016814          185 GIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP  264 (382)
Q Consensus       185 ~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~  264 (382)
                      |.+.. ..++|.+...++|.||-+...++..|....         +.+.|.+...+++.+..=+   ...+..+...+..
T Consensus        25 ~~~~i-~p~lp~LL~WLQD~NWPvA~~i~~~L~~~~---------~~l~p~I~~vl~s~D~~W~---ywil~~lv~~~~~   91 (134)
T 3ut4_A           25 IDNEI-EPIIFDLLKWLQDYNWPIAKDILPVVVLHQ---------SIAMPHILTILQGNDIMWK---YWVIKLMIPYLIY   91 (134)
T ss_dssp             CHHHH-HHHHHHHHGGGSCTTSTTHHHHHHHHHHTH---------HHHHHHHHHHHHSSCHHHH---HHHHHHHGGGCCH
T ss_pred             CHHHH-HHHHHHHHHHHhcCCCccHHHHHHHHHHcc---------HhhHHHHHHHHHcCChHHH---HHHHHHHHHcCCH
Confidence            55555 678888899999999998888877776543         2455666665554332211   2333334444433


Q ss_pred             HHHHhhhHHHHHhhhcCc-----chHHHHHHHHHHHHh
Q 016814          265 EWAMQHITPQVLEMINNP-----HYLYRMTILRAISLL  297 (382)
Q Consensus       265 ~~~~~~l~~~l~~~l~~~-----~~~~r~~a~~~l~~l  297 (382)
                      + ....+.|.+.....++     ...+.+.|-..+...
T Consensus        92 ~-~~~~l~~eL~rl~~~pt~~E~~eev~e~A~~iL~~~  128 (134)
T 3ut4_A           92 P-NKQLVKSELERLSSLEIINEDIREIVNLSKDYLHFY  128 (134)
T ss_dssp             H-HHHHHHHHHHHHHTCCCSSGGGHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH
Confidence            3 3345666666666554     356666666666554

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=86.46  E-value=7.8  Score=30.65  Aligned_cols=96  Identities=6%  Similarity=0.094  Sum_probs=63.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~  120 (382)
                      ..++||..-...+..+..     ++. ...+.+..+.+-+++.++.|...|+..|..+.+.+|.....    ..++..+.
T Consensus        18 ~~~~dw~~~leicd~i~~-----~~~-~~k~a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~   91 (220)
T 1dvp_A           18 RLEPDWPSILLICDEINQ-----KDV-TPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFS   91 (220)
T ss_dssp             CSSCCHHHHHHHHHHHHT-----TSS-CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHhhcC-----CCc-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHH
Confidence            346777765555554431     111 23456777888888999999999999999999888764221    22444444


Q ss_pred             hhcC-CCchHHHHHHHHHHHhhccccC
Q 016814          121 ELSS-DSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       121 ~~~~-d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      .+++ ..+..||..+...+..+...+.
T Consensus        92 ~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (220)
T 1dvp_A           92 SFLESTPHENVRQKMLELVQTWAYAFR  118 (220)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHhc
Confidence            4443 4567889888888888776554

>3s4w_B Protein FACD2, fanconi anemia group D2 protein homolog; DNA repair, DNA binding protein; 3.41A {Mus musculus}

Probab=86.02  E-value=33  Score=35.09  Aligned_cols=149  Identities=9%  Similarity=0.048  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh-hhhh
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE-ITCS  308 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~  308 (382)
                      +.++.+...++.+.++.|+.-+...-..+.+.+ .+.+...++..+.....+.+..--.+|+..+..++...... ....
T Consensus       399 ~siL~La~~Ll~S~~~~v~~Fg~~lY~~lF~~f-d~~~qqeVl~~Lv~hi~sg~~~eVd~ALdvL~~L~~~~~~~l~~~a  477 (1323)
T 3s4w_B          399 PSILLLAQTLFHSQDQRIILFGSLLYKYAFKFF-DTYCQQEVVGALVTHVCSGTEAEVDTALDVLLELIVLNASAMRLNA  477 (1323)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCHHHHHHTH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-cchhHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHhcCHHHHhHHH
Confidence            456677778888999999999988888888777 35567778888877766666555667888888888654332 1223


Q ss_pred             hhHHHHHhhccCCCc-cHHHHHHHHHHHHhhhhh---HHHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          309 RLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVD---QSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       309 ~~l~~l~~~l~d~~~-~vR~~a~~~l~~i~~~~~---~~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .++..++..+.+=+. ++|.. ...|..++-.-+   ...+.+.+.-.+.+-+..++.+.++...-+.-.++..++
T Consensus       478 ~~l~giLD~l~~l~~~QiRkl-f~iL~~laf~~~~~~~~~i~ddl~ivIRKQLs~~~~~~KriGIIGav~~v~~~~  552 (1323)
T 3s4w_B          478 AFVKGILDYLENMSPQQIRKI-FCILSTLAFSQQPGTSNHIQDDMHLVIRKQLSSTVFKYKLIGIIGAVTMAGIMA  552 (1323)
T ss_dssp             HHHHGGGGGGGGCCHHHHHHH-HHHHHHHHHHHCSSCCCHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCCCHHHHHHH-HHHHHHHHcCCCCCcchhhHHhHHHHHHHHHhCCchhhhhhhHHHHHHHHHHHH
Confidence            345555555555443 35543 555555442111   112445555566677777777776666655555555554

>3gvo_A Pumilio 2, pumilio homolog 2; RNA-binding, PUF domain, RNA binding protein; HET: DTD; 1.60A {Mus musculus} SCOP: a.118.1.8 PDB: 3gvt_A 3q0q_A 3q0r_A 3q0s_A 1ib2_A 1m8w_A 1m8x_A 1m8y_A 1m8z_A 3q0l_A 3q0m_A 3q0n_A 3q0o_A 3q0p_A 2yjy_A 3bsx_A 3bsb_A 3h3d_X

Probab=84.62  E-value=11  Score=32.35  Aligned_cols=14  Identities=21%  Similarity=0.309  Sum_probs=6.8

Q ss_pred             chHHHHHHhcCCCc
Q 016814           75 DLVPAYVRLLRDNE   88 (382)
Q Consensus        75 ~ll~~l~~~l~d~~   88 (382)
                      ++.|.+.+++.|+.
T Consensus        59 ei~~~~~~L~~d~~   72 (351)
T 3gvo_A           59 EILQAAYQLMTDVF   72 (351)
T ss_dssp             HHGGGHHHHHTSTT
T ss_pred             HHHHhHHHHHhChh
Confidence            34444555555543

>1w9c_A CRM1 protein, exportin 1; nuclear protein, nuclear export complex; 2.3A {Homo sapiens} SCOP: a.118.1.19

Probab=84.42  E-value=17  Score=30.50  Aligned_cols=60  Identities=10%  Similarity=0.016  Sum_probs=48.5

Q ss_pred             CCCchHHHHHHHHhHHHHhhhc-------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          203 DRHWRVRLAIIEYIPLLASQLG-------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       203 d~~~~vr~~~~~~l~~l~~~~~-------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      ++.|+.|......+..+..+.-       ++.+ +.++..+....+++..+|-+.++..+..+...++
T Consensus       133 ~eyPehR~~Ff~LL~ai~~~cF~al~~lp~~~f-klvidsiiWa~kH~~r~V~e~gL~il~~ll~n~~  199 (321)
T 1w9c_A          133 EEYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQF-KLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA  199 (321)
T ss_dssp             TCSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhHHHHHcCCHHHH-HHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHh
Confidence            4678999999999998876543       3332 4678888899999999999999999999888774

>3bwt_A Protein PUF4; pumilio, RNA binding, HO endonuclease, transcription, RNA binding protein; 2.69A {Saccharomyces cerevisiae} PDB: 4dzs_A 3bx2_A 3bx3_A

Probab=83.77  E-value=18  Score=30.56  Aligned_cols=7  Identities=14%  Similarity=0.050  Sum_probs=3.0

Q ss_pred             HhhccCC
Q 016814          315 INASKDR  321 (382)
Q Consensus       315 ~~~l~d~  321 (382)
                      ..++.|+
T Consensus       276 ~~L~~d~  282 (333)
T 3bwt_A          276 QSLLNDS  282 (333)
T ss_dssp             HHHHTST
T ss_pred             HHHHcCC
Confidence            3444444

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=83.65  E-value=11  Score=30.45  Aligned_cols=142  Identities=13%  Similarity=0.094  Sum_probs=83.2

Q ss_pred             HHHHHHHHHhcc-chhHHHHHHHHHHHHHHHHhChHH----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhcc-ccChh
Q 016814          231 KLGALCMQWLQD-KVYSIRDAAANNLKRLAEEFGPEW----AMQHITPQVLEMINNPHYLYRMTILRAISLLAP-VMGSE  304 (382)
Q Consensus       231 ~l~~~l~~~l~d-~~~~vr~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~-~~~~~  304 (382)
                      .+.|.+....++ +...+|..++..+|.+++.-.++.    ....++|.+...++..+.-.+..|...+.++.. ..|-+
T Consensus       101 yLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~  180 (268)
T 2fv2_A          101 FLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLA  180 (268)
T ss_dssp             GTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             HhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHH
Confidence            355555444443 346789899999999887644432    346789999998888888888888888888642 22221


Q ss_pred             h---------hhhhhH-HHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHH------HhcCCCCccHHhHH
Q 016814          305 I---------TCSRLL-PVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLV------ELTEDPDVDVRFFA  368 (382)
Q Consensus       305 ~---------~~~~~l-~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~------~l~~d~~~~vr~~a  368 (382)
                      +         ....++ ..+..+..++++.+-...+++.-.+.............+|.-.      .++. .|+.++.+-
T Consensus       181 YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~~~LP~~Lrd~tf~~~l~-~D~~~k~~l  259 (268)
T 2fv2_A          181 YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALRQCLPDQLKDTTFAQVLK-DDTTTKRWL  259 (268)
T ss_dssp             HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHHHHSCGGGTSSTTHHHHT-SCHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHHHhCcHHhhChHHHHHHh-cCHHHHHHH
Confidence            1         122333 2344455677776667777777777665444333333333221      1122 255566555


Q ss_pred             HHHHH
Q 016814          369 TQAIQ  373 (382)
Q Consensus       369 ~~al~  373 (382)
                      .+-+.
T Consensus       260 ~qLl~  264 (268)
T 2fv2_A          260 AQLVK  264 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2

Probab=82.98  E-value=12  Score=27.68  Aligned_cols=95  Identities=11%  Similarity=0.147  Sum_probs=65.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHh-h
Q 016814           46 QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPELAI----QHILPC-V  119 (382)
Q Consensus        46 ~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~-l  119 (382)
                      .++||..=...|..+..     ++ ....+.+..+.+.++ ..++.|...|+..+..+.+.+|.....    ..++.. +
T Consensus        30 ~~~Dw~~~leicD~I~~-----~~-~~~k~a~ral~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~L  103 (157)
T 1elk_A           30 QSEDWALNMEICDIINE-----TE-EGPKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVL  103 (157)
T ss_dssp             SSCCHHHHHHHHHHHHH-----SS-SHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHH
Confidence            46677776666665542     12 122456777777786 578999999999999999999876332    234554 4


Q ss_pred             hhhcC---CCchHHHHHHHHHHHhhccccC
Q 016814          120 KELSS---DSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       120 ~~~~~---d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      ..++.   ++...||..+...+..+...++
T Consensus       104 vk~~~~k~~~~~~Vk~kil~li~~W~~~f~  133 (157)
T 1elk_A          104 VRTILPKNNPPTIVHDKVLNLIQSWADAFR  133 (157)
T ss_dssp             HHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHHHHHHcC
Confidence            55553   3456899999999888887665

>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*

Probab=82.16  E-value=25  Score=30.64  Aligned_cols=249  Identities=10%  Similarity=0.085  Sum_probs=122.5

Q ss_pred             CCCHHHHHHHHHHHHHHHHHh--C----CcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHHH-HHHhhhHh
Q 016814           47 DKSWRVRYMVANQLYELCEAV--G----PEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPEL-AIQHILPC  118 (382)
Q Consensus        47 d~~~~vR~~a~~~l~~l~~~~--~----~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~~-~~~~il~~  118 (382)
                      |++|.=-+.+.+.+..+...-  .    ........+-.+++++.+++++=|...-..|..+-..+ +... +...+-..
T Consensus        95 e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~kf~~~R~~Irk~inni  174 (403)
T 3fga_B           95 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  174 (403)
T ss_dssp             CTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            456766677777776665532  1    12222335666788999999999988877777654332 2221 11111112


Q ss_pred             hhhhcCCCc-hHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhhHhhhH
Q 016814          119 VKELSSDSS-QHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL  193 (382)
Q Consensus       119 l~~~~~d~~-~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~~~~~~~~~~~~~~l  193 (382)
                      +...+.+.. ..--....+.++.+...+.   ++.....+...+..+-+..+-. .-.....++..+.+.  ...+...+
T Consensus       175 f~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv~qf~eK--Dp~L~~~v  252 (403)
T 3fga_B          175 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPV  252 (403)
T ss_dssp             HHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred             HHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHh--CchhHHHH
Confidence            222211111 1111234444444443332   1111112223333333332211 112222233333221  01122344


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHH---HHHHHHHHhccchhHHHHHHHHHHHH--HHHHhChHHHH
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKR--LAEEFGPEWAM  268 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~--~~~~~~~~~~~  268 (382)
                      +..+....--.+..-....+..+..+....++..+.+.   ++..+...+.+++..|-+.|+..+..  +...+.  ...
T Consensus       253 i~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wnNe~i~~li~--~n~  330 (403)
T 3fga_B          253 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA  330 (403)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred             HHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhccHHHHHHHH--HhH
Confidence            44444444444444455677778888888887776543   45555667788999999988766522  111111  112


Q ss_pred             hhhHHHHHhhh-----cCcchHHHHHHHHHHHHhcc
Q 016814          269 QHITPQVLEMI-----NNPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       269 ~~l~~~l~~~l-----~~~~~~~r~~a~~~l~~l~~  299 (382)
                      ..++|.+...+     ++-+..+|..+..++..+.+
T Consensus       331 ~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e  366 (403)
T 3fga_B          331 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  366 (403)
T ss_dssp             HHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            33555544333     23456788888888877654

>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20

Probab=81.02  E-value=29  Score=30.73  Aligned_cols=249  Identities=11%  Similarity=0.087  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHH--hCCc----ccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhh-CHH-HHHHhhhHh
Q 016814           47 DKSWRVRYMVANQLYELCEA--VGPE----PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRIL-NPE-LAIQHILPC  118 (382)
Q Consensus        47 d~~~~vR~~a~~~l~~l~~~--~~~~----~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~-~~~-~~~~~il~~  118 (382)
                      |++|.=-+.+.+.+..+.+.  +...    ......+-.+++++.+++++-|...-..|..+-..+ +.. .+...+-..
T Consensus       128 e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~LktiLhrIY~Kf~~~R~~Irk~i~ni  207 (449)
T 2npp_B          128 EAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNI  207 (449)
T ss_dssp             CTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHSCTTTHHHHHHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45676667777776666543  2222    122346777888999999999988877776664332 221 111111122


Q ss_pred             hhhhcCC-CchHHHHHHHHHHHhhccccC---hHhHHHhhHHHHHHhhcCCChH-HHHHHHHhhHHhhhhhchhhHhhhH
Q 016814          119 VKELSSD-SSQHVRSALASVIMGMAPLLG---KDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQSL  193 (382)
Q Consensus       119 l~~~~~d-~~~~vr~~a~~~l~~l~~~~~---~~~~~~~l~~~l~~~l~d~~~~-vr~~~~~~l~~~~~~~~~~~~~~~l  193 (382)
                      +...+.+ ....--....+.++.+...+.   ++.....+...+..+.+...-. --.....++..+.+.  ...+...+
T Consensus       208 f~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~~y~~qL~ycv~qf~eK--Dp~L~~~v  285 (449)
T 2npp_B          208 FYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFLEK--DSTLTEPV  285 (449)
T ss_dssp             HHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGGGTHHHHHHHHHHHHHH--CGGGHHHH
T ss_pred             HHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhHHhHHHHHHHHHHHHhc--CcHhHHHH
Confidence            2222211 111111244455555544332   1211222223333333332211 111222222232221  01122334


Q ss_pred             HHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHH---HHHHHHHHhccchhHHHHHHHHHHHHH--HHHhChHHHH
Q 016814          194 LPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDK---LGALCMQWLQDKVYSIRDAAANNLKRL--AEEFGPEWAM  268 (382)
Q Consensus       194 lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~---l~~~l~~~l~d~~~~vr~~a~~~l~~~--~~~~~~~~~~  268 (382)
                      +..+....--.+..-....+..+..+....++..+.+.   ++..+...+.+++..|-+.|+..+..-  ...+.  ...
T Consensus       286 i~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfqVAErAL~~w~N~~i~~li~--~n~  363 (449)
T 2npp_B          286 VMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLIS--DNA  363 (449)
T ss_dssp             HHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGGCHHHHHHHH--TTH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHH--hch
Confidence            44444443333444445677778888888888777644   555566778899999999988665321  21111  113


Q ss_pred             hhhHHHHHhhhc-----CcchHHHHHHHHHHHHhcc
Q 016814          269 QHITPQVLEMIN-----NPHYLYRMTILRAISLLAP  299 (382)
Q Consensus       269 ~~l~~~l~~~l~-----~~~~~~r~~a~~~l~~l~~  299 (382)
                      ..++|.+...+.     +-+..+|..+..++..+.+
T Consensus       364 ~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e  399 (449)
T 2npp_B          364 AKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFME  399 (449)
T ss_dssp             HHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHT
T ss_pred             hhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence            446676665442     2345689888888877654

>1vsy_4 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_5

Probab=80.37  E-value=44  Score=32.32  Aligned_cols=91  Identities=13%  Similarity=0.113  Sum_probs=58.2

Q ss_pred             HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccC--hHhHHHhhHHHHHHhhcC---CChHHHHHHHHhhHHhhhhh
Q 016814          110 LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLG--KDATIEQLLPIFLSLLKD---EFPDVRLNIISKLDQVNQVI  184 (382)
Q Consensus       110 ~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~--~~~~~~~l~~~l~~~l~d---~~~~vr~~~~~~l~~~~~~~  184 (382)
                      .+.+.+.|.+...+.+++..+...+..++..++..-+  ++...+.++..+...+..   ..+.-...+++++..++..+
T Consensus       335 ~fV~~l~p~~~~g~fSK~~~~~~~~~~~l~~La~l~P~~~~lVlP~vL~r~y~sLe~~~l~e~Hrl~~aL~~l~~~~r~l  414 (799)
T 1vsy_4          335 EIVEIFLNIISLGSQNKNPDIANYYISCFAYLLELDPSNAYLIYDKILIDLYDTLADQFINSRHRIISSLKQFTRVIRFI  414 (799)
T ss_dssp             HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHhCcCCcchHHHHHHHHHHHHhcCCCccceehHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHH
Confidence            4456677788888889999999888888888886433  245556666666666665   34555556677777776554


Q ss_pred             chh-hHhhhHHHHHHHH
Q 016814          185 GID-LLSQSLLPAIVEL  200 (382)
Q Consensus       185 ~~~-~~~~~llp~l~~~  200 (382)
                      -.. .+...+.|.+.-+
T Consensus       415 v~~~~yr~hl~~lL~l~  431 (799)
T 1vsy_4          415 VMDKLYRVHITNVLSML  431 (799)
T ss_dssp             TTSTTGGGHHHHHHHHH
T ss_pred             hcCcccHHHHHHHHHHH
Confidence            332 2334444444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-57
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-24
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-23
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	8e-22
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	9e-22
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	7e-21
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	3e-19
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	5e-17
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	1e-16
d1b3ua_	588	a.118.1.2 (A:) Constant regulatory domain of prote	2e-15
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	2e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	9e-14
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	1e-12
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-09
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-12
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	2e-05
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	9e-10
d1lrva_	233	a.118.1.5 (A:) Leucine-rich repeat variant {Azotob	2e-04
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	2e-07
d1qbkb_	888	a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi	0.004
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	3e-07
d2vgla_	584	a.118.1.10 (A:) Adaptin alpha C subunit N-terminal	4e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	1e-06
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	4e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	8e-05
d1ibrb_	458	a.118.1.1 (B:) Importin beta {Human (Homo sapiens)	2e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	5e-04
d2bpta1	861	a.118.1.1 (A:1-861) Importin beta {Baker's yeast (	0.002
d1oyza_	276	a.118.1.16 (A:) Hypothetical protein YibA {Escheri	8e-04

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  194 bits (493), Expect = 3e-57
 Identities = 217/379 (57%), Positives = 285/379 (75%), Gaps = 4/379 (1%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           M +   S++QDSVRLLAVE C  + +LL  +D  A ++P +   ++DKSWRVRYMVA++ 
Sbjct: 207 MFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKF 266

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHIL 116
            EL +AVGPE T+ DLVPA+  L++D EAEVR AA+ KV +FC  L+ +      +  IL
Sbjct: 267 TELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQIL 326

Query: 117 PCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
           PC+KEL SD++QHV+SALASVIMG++P+LGKD TIE LLP+FL+ LKDE P+VRLNIIS 
Sbjct: 327 PCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISN 386

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           LD VN+VIGI  LSQSLLPAIVELAED  WRVRLAIIEY+PLLA QLGV FFD+KL +LC
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446

Query: 237 MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISL 296
           M WL D VY+IR+AA +NLK+L E+FG EWA   I P+VL M  +P+YL+RMT L  I++
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 297 LAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVEL 356
           L+ V G +IT   +LP V+  + D V N++FNVAK LQ + PI+D S ++  ++P L +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566

Query: 357 TEDPDVDVRFFATQAIQSI 375
           T+D DVDV++FA +A+  +
Sbjct: 567 TQDQDVDVKYFAQEALTVL 585

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 2e-24
 Identities = 46/200 (23%), Positives = 86/200 (43%)

Query: 21  CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80
              + +++  +     +LP IV  ++D  WRVR  +   +  L   +G E     L    
Sbjct: 387 LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLC 446

Query: 81  VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 140
           +  L D+   +R AA   + K       E A   I+P V  +S D +   R      I  
Sbjct: 447 MAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINV 506

Query: 141 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200
           ++ + G+D T + +LP  L +  D   +VR N+   L ++  ++    L   + P + +L
Sbjct: 507 LSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKL 566

Query: 201 AEDRHWRVRLAIIEYIPLLA 220
            +D+   V+    E + +L+
Sbjct: 567 TQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.5 bits (246), Expect = 2e-23
 Identities = 56/299 (18%), Positives = 115/299 (38%), Gaps = 2/299 (0%)

Query: 84  LRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAP 143
           LR+ + ++R+ +  K++     L  E     +LP + +   D  + V  ALA  +     
Sbjct: 19  LRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDE-VLLALAEQLGTFTT 77

Query: 144 LLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAED 203
           L+G    +  LLP   SL   E   VR   +  L  ++       L    +P +  LA  
Sbjct: 78  LVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG 137

Query: 204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG 263
             +  R +      +   ++      + L         D    +R AAA+ L   A+   
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAE-LRQYFRNLCSDDTPMVRRAAASKLGEFAKVLE 196

Query: 264 PEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVP 323
            +     I P    + ++     R+  + A   +A ++  E   + ++P +  A++D+  
Sbjct: 197 LDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSW 256

Query: 324 NIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 382
            +++ VA     L   V   + +  + P    L +D + +VR  A+  ++     + + 
Sbjct: 257 RVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSAD 315

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 8e-22
 Identities = 51/230 (22%), Positives = 90/230 (39%), Gaps = 4/230 (1%)

Query: 152 EQLLPI--FLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR 209
           + L PI   +  L++E   +RLN I KL  +   +G++     LLP + +   D    V 
Sbjct: 7   DSLYPIAVLIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVL 65

Query: 210 LAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQ 269
           LA+ E +    + +G   +   L          +   +RD A  +L+ ++ E  P     
Sbjct: 66  LALAEQLGTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEA 125

Query: 270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNV 329
           H  P V  +     +  R +     S+  P + S +  + L     N   D  P ++   
Sbjct: 126 HFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVK-AELRQYFRNLCSDDTPMVRRAA 184

Query: 330 AKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
           A  L     +++   V+  I P    L  D    VR  A +A  +I  ++
Sbjct: 185 ASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLL 234

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.9 bits (234), Expect = 9e-22
 Identities = 71/377 (18%), Positives = 130/377 (34%), Gaps = 6/377 (1%)

Query: 8   NDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAV 67
           N+   +RL +++  + +   L  +   + +LP + +   D+   V   +A QL      V
Sbjct: 21  NEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTLV 79

Query: 68  GPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSS 127
           G       L+P    L    E  VR  A   +       +P     H +P VK L+    
Sbjct: 80  GGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDW 139

Query: 128 QHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID 187
                  A  +  +       A   +L   F +L  D+ P VR    SKL +  +V+ +D
Sbjct: 140 -FTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD 198

Query: 188 LLSQSLLPAIVELAEDRHWRVRL----AIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 243
            +   ++P    LA D    VRL    A +    LL  +         L           
Sbjct: 199 NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRV 258

Query: 244 VYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS 303
            Y + D      K +  E      +      + +            +      L+     
Sbjct: 259 RYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRE 318

Query: 304 EITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVD 363
            +  S++LP +     D   ++K  +A V+  L PI+ +    + + P  +   +D   +
Sbjct: 319 NVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE 378

Query: 364 VRFFATQAIQSIDHVMM 380
           VR      +  ++ V+ 
Sbjct: 379 VRLNIISNLDCVNEVIG 395

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 92.2 bits (227), Expect = 7e-21
 Identities = 59/338 (17%), Positives = 119/338 (35%), Gaps = 6/338 (1%)

Query: 46  QDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRI 105
           +++  ++R     +L  +  A+G E TR +L+P     + D + EV +A A ++  F  +
Sbjct: 20  RNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDED-EVLLALAEQLGTFTTL 78

Query: 106 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDE 165
           +     +  +LP ++ L++     VR      +  ++            +P+   L    
Sbjct: 79  VGGPEYVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGG- 137

Query: 166 FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV 225
                      L  V        +   L      L  D    VR A    +   A  L +
Sbjct: 138 DWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL 197

Query: 226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYL 285
                ++  +      D+  S+R  A      +A+    E     + P + +   +  + 
Sbjct: 198 DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWR 257

Query: 286 YRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMV 345
            R  +    + L   +G EIT + L+P   N  KD    ++   +  ++     +     
Sbjct: 258 VRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCR 317

Query: 346 EKT----IRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
           E      I PC+ EL  D +  V+      I  +  ++
Sbjct: 318 ENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL 355

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.2 bits (214), Expect = 3e-19
 Identities = 53/278 (19%), Positives = 119/278 (42%)

Query: 21  CAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY 80
           C  L         ++ ILP I     D +  V+  +A+ +  L   +G + T   L+P +
Sbjct: 309 CENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLF 368

Query: 81  VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 140
           +  L+D   EVR+     +     ++      Q +LP + EL+ D+   VR A+   +  
Sbjct: 369 LAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPL 428

Query: 141 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200
           +A  LG +   E+L  + ++ L D    +R    S L ++ +  G +    +++P ++ +
Sbjct: 429 LAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAM 488

Query: 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260
           + D ++  R+  +  I +L+   G       +    ++   D V ++R   A +L+++  
Sbjct: 489 SGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGP 548

Query: 261 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLA 298
                     + P + ++  +     +     A+++L+
Sbjct: 549 ILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.2 bits (196), Expect = 5e-17
 Identities = 49/256 (19%), Positives = 103/256 (40%)

Query: 4   WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYEL 63
              S+    V+         L  +L   + + H+LP+ +   +D+   VR  + + L  +
Sbjct: 331 ELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCV 390

Query: 64  CEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELS 123
            E +G       L+PA V L  D +  VR+A    +      L  E   + +        
Sbjct: 391 NEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL 450

Query: 124 SDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183
            D    +R A  S +  +    GK+     ++P  L++  D     R+  +  ++ +++V
Sbjct: 451 VDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEV 510

Query: 184 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDK 243
            G D+ ++ +LP ++ +A D    VR  + + +  +   L       ++  +  +  QD+
Sbjct: 511 CGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQDQ 570

Query: 244 VYSIRDAAANNLKRLA 259
              ++  A   L  L+
Sbjct: 571 DVDVKYFAQEALTVLS 586

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (193), Expect = 1e-16
 Identities = 72/373 (19%), Positives = 150/373 (40%), Gaps = 5/373 (1%)

Query: 7   SNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
           + ++  VR  AVE   A+     P D  AH +P++   +    W      A  L+ +C  
Sbjct: 97  TVEETVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYP 155

Query: 67  VGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDS 126
                 + +L   +  L  D+   VR AAA K+ +F ++L  +     I+P    L+SD 
Sbjct: 156 RVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDE 215

Query: 127 SQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
              VR       + +A LL ++     ++P      +D+   VR  +  K  ++ + +G 
Sbjct: 216 QDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP 275

Query: 187 DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQD 242
           ++    L+PA   L +D    VR A    +      L     +     ++     + + D
Sbjct: 276 EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD 335

Query: 243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG 302
               ++ A A+ +  L+   G +  ++H+ P  L  + +     R+ I+  +  +  V+G
Sbjct: 336 ANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIG 395

Query: 303 SEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDV 362
                  LLP ++  ++D    ++  + + +  L   +     ++ +    +    D   
Sbjct: 396 IRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVY 455

Query: 363 DVRFFATQAIQSI 375
            +R  AT  ++ +
Sbjct: 456 AIREAATSNLKKL 468

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 588

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.2 bits (183), Expect = 2e-15
 Identities = 27/142 (19%), Positives = 55/142 (38%)

Query: 1   MIAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQL 60
           +      +   ++R  A      L +    +   A I+P ++  S D ++  R      +
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCI 504

Query: 61  YELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK 120
             L E  G + T   ++P  +R+  D  A VR   A  + K   IL+       + P ++
Sbjct: 505 NVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILE 564

Query: 121 ELSSDSSQHVRSALASVIMGMA 142
           +L+ D    V+      +  ++
Sbjct: 565 KLTQDQDVDVKYFAQEALTVLS 586

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.9 bits (177), Expect = 2e-14
 Identities = 49/369 (13%), Positives = 114/369 (30%), Gaps = 20/369 (5%)

Query: 31  QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAE 90
            D    ++ +I+   +DK+  V+ +    L  L   V  E     +V      +  ++ +
Sbjct: 40  DDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQ 98

Query: 91  VRIAAAGKVTKFCRILNP--------ELAIQHILPCVKE-LSSDSSQHVRSALASVIMGM 141
           +R  ++  +      L P            + I   +   ++      V+     ++  M
Sbjct: 99  LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM 158

Query: 142 APLLGKDAT--IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE 199
               G         +L   L  L      VR   I  L  +    G  +    +   + E
Sbjct: 159 LSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSE 218

Query: 200 LAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDKLGALCMQWLQDKVYSIRDAAANNLKR 257
           L+++         I+ I  ++ Q G     + +K+  L +++       +R+      + 
Sbjct: 219 LSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFES 278

Query: 258 LAEEFGPEWAMQH--ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVI 315
                  E       I    L+ +               + +           +      
Sbjct: 279 FVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM--DADGGDDDDQGSDDEY 336

Query: 316 NASKDRVPNIKFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQ 373
           +   D    ++   AK L +++    + + E  KT+ P L+   ++ + +V+     A  
Sbjct: 337 SDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYL 396

Query: 374 SIDHVMMSS 382
           S+       
Sbjct: 397 SLLKQTRPV 405

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.9 bits (172), Expect = 9e-14
 Identities = 45/288 (15%), Positives = 92/288 (31%), Gaps = 17/288 (5%)

Query: 35  AHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYVRLLRDNEAEV 91
           ++ +  ++          R+M  N L    +       + +   +V   ++LL D   EV
Sbjct: 2   SYHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEV 61

Query: 92  RIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRS----ALASVIMGMAPLLGK 147
           +  A   +      +  E  ++ I+  +        + +R      L +VI  + P    
Sbjct: 62  QNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSG 120

Query: 148 DATIEQLLPIFLSLL-----KDEFPDVRLNIISKLDQVNQVIGIDL--LSQSLLPAIVEL 200
            A    +       L     K E   V+L  +  +  +    G  L     S+L  ++  
Sbjct: 121 SALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQ 180

Query: 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260
                  VR   I  +  L    G   F D +  L  +  ++   S        +  ++ 
Sbjct: 181 LTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISR 240

Query: 261 EFGPEWA--MQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT 306
           + G      ++ I P V++  N      R   ++A          E+ 
Sbjct: 241 QAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVY 288

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.1 bits (162), Expect = 1e-12
 Identities = 48/393 (12%), Positives = 124/393 (31%), Gaps = 22/393 (5%)

Query: 8   NDQDS-VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEA 66
            D++  V+ LAV+    L   +  +  V  I+  +         ++R + +  L  +   
Sbjct: 55  EDKNGEVQNLAVKCLGPLVSKV-KEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGE 113

Query: 67  VGPEPTRMDLVPAYVR---------LLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--I 115
           + P  +   L     +         + +  +  V++ A   +          L   H  I
Sbjct: 114 LPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSI 173

Query: 116 LPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIIS 175
           L C+    +     VR      +  +    G    ++ +  +   L K++        I 
Sbjct: 174 LTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQ 233

Query: 176 KLDQVNQVIGIDLLSQ--SLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGF--FDDK 231
            +  +++  G  +      ++P +V+        +R   I+       +           
Sbjct: 234 CIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVST 293

Query: 232 LGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTIL 291
           +  +C+++L        D    +   +  +          +       ++  +  R    
Sbjct: 294 IINICLKYLTYDPNYNYDDEDEDENAMDADG--GDDDDQGSDDEYSDDDDMSWKVRRAAA 351

Query: 292 RAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTI 349
           + +  +       +      + P +I+  K+R  N+K +V     SL+    + +     
Sbjct: 352 KCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLL-KQTRPVQSWLC 410

Query: 350 RPCLVELTEDPDVDVRFFATQAIQSIDHVMMSS 382
            P  +E  E P   ++      ++++   M   
Sbjct: 411 DPDAMEQGETPLTMLQSQVPNIVKALHKQMKEK 443

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 4e-09
 Identities = 42/296 (14%), Positives = 88/296 (29%), Gaps = 11/296 (3%)

Query: 86   DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL 145
               A +    A  VT    +   +L      P   + ++ + +    ++A  +  +    
Sbjct: 748  ALSAMLDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRAC 807

Query: 146  GKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRH 205
             K+        I           +RL  +  L +V   I +    + L   I+E      
Sbjct: 808  PKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQLE-LKSVILEAFSSPS 866

Query: 206  WRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE 265
              V+ A    +  ++      +    L  +  Q    + Y +  +    +   +      
Sbjct: 867  EEVKSAASYALGSISVGNLPEYLPFVLQEITSQP--KRQYLLLHSLKEIISSASVVGLKP 924

Query: 266  WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNI 325
            +    I   +L+         R  +   +  L  +         LLP +           
Sbjct: 925  YVEN-IWALLLKHCECAEEGTRNVVAECLGKLTLIDPET-----LLPRLKGYLISGSSYA 978

Query: 326  KFNVAKVLQSLIPIVDQSMVE--KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM 379
            + +V   ++  I    Q +    K      ++  EDPD++VR  A     S  H  
Sbjct: 979  RSSVVTAVKFTISDHPQPIDPLLKNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNK 1034

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 56.3 bits (135), Expect = 9e-10
 Identities = 34/199 (17%), Positives = 58/199 (29%), Gaps = 53/199 (26%)

Query: 77  VPAYVRLLRDNEAEVRIAAAG-------------KVTKFCRILNPELAIQHILPCVKELS 123
           V A   L+RD++  VR A A              +  +    +   L ++ +        
Sbjct: 68  VEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--D 125

Query: 124 SDSSQHVRSALASVIMGMAPLL-------GKDATIEQLLPIFLSLLKDEFPDVRLNIISK 176
            D               +   +        K             + +D  P+VR  + S+
Sbjct: 126 RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR 185

Query: 177 LDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC 236
           L                   ++EL  D  W VRLA +E+  L A                
Sbjct: 186 LR---------------GDDLLELLHDPDWTVRLAAVEHASLEA---------------- 214

Query: 237 MQWLQDKVYSIRDAAANNL 255
           ++ L +    +R A A  L
Sbjct: 215 LRELDEPDPEVRLAIAGRL 233

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} Length = 233

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.1 bits (93), Expect = 2e-04
 Identities = 41/304 (13%), Positives = 85/304 (27%), Gaps = 82/304 (26%)

Query: 71  PTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHV 130
             RM L+        D  A V + +  ++ +F R  NP LA+Q++        +D     
Sbjct: 10  SFRMSLLLTGRCTPGD--ACVAVESGRQIDRFFR-NNPHLAVQYL--------ADPFWER 58

Query: 131 RSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLS 190
           R+              + + +E L P    L++D    VR  +  +L +           
Sbjct: 59  RAIAV-----------RYSPVEALTP----LIRDSDEVVRRAVAYRLPR----------- 92

Query: 191 QSLLPAIVELAEDRHWRVRLAIIEY--IPLLASQLGVGFFDDKLGALCMQWLQDKVYSIR 248
                 +  L  D    VR+ + +   +  L        +  +   +           +R
Sbjct: 93  ----EQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR 148

Query: 249 DAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCS 308
           D      K +A+    E         +  M  +P    R  +   +              
Sbjct: 149 DEDRQVRKLVAKRLPEES--------LGLMTQDPEPEVRRIVASRLRG------------ 188

Query: 309 RLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDPDVDVRFFA 368
                ++    D    ++    +                      +   ++PD +VR   
Sbjct: 189 ---DDLLELLHDPDWTVRLAAVE----------------HASLEALRELDEPDPEVRLAI 229

Query: 369 TQAI 372
              +
Sbjct: 230 AGRL 233

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 2e-07
 Identities = 48/410 (11%), Positives = 127/410 (30%), Gaps = 43/410 (10%)

Query: 12  SVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP 71
            +R         +    E Q+    +LP + +    + +         L ++CE      
Sbjct: 103 LIRATVGILITTIASKGELQN-WPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEIL 161

Query: 72  TR-------MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQH--ILPCVKEL 122
                      ++P +++  + +  ++R  A   V +F       L +        +  L
Sbjct: 162 DSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFAL 221

Query: 123 SSDSSQHVRSALASVIMGMAPLLGK--DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQV 180
           + D    VR  +   ++ +  +        +  ++   L   +D+  +V L        +
Sbjct: 222 AGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTL 281

Query: 181 NQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL 240
            +      +    LP ++ +  +      + II     +     +   +  +     +  
Sbjct: 282 AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSR 341

Query: 241 Q-------------------------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV 275
                                        +++R  +A  L  LA  +  +  + HI P +
Sbjct: 342 TVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVY-RDELLPHILPLL 400

Query: 276 LEMINNPHYLYRMTILRAISLLAPVMGSEIT--CSRLLPVVINASKDRVPNIKFNVAKVL 333
            E++ +  ++ + + +  +  +A      +      L+P +I    D+   ++      L
Sbjct: 401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTL 460

Query: 334 QSLIPIV---DQSMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM 380
                 V         K +   L++   D +  V+  A  A  +++    
Sbjct: 461 SRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEAC 510

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.004
 Identities = 33/247 (13%), Positives = 81/247 (32%), Gaps = 20/247 (8%)

Query: 148 DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWR 207
           +  ++Q+L +           ++  +  KL+Q+NQ         + L  ++   +     
Sbjct: 7   EQGLQQILQLLKESQ-SPDTTIQRTVQQKLEQLNQYPDF----NNYLIFVLTKLKSEDEP 61

Query: 208 VRLAIIEYIPLLASQLGVGFFDDKLGAL---CMQWLQDKVYSIRDAAANNLKRLAEEFGP 264
            R      +          F +     +   C+  + D    IR      +  +A +   
Sbjct: 62  TRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGEL 121

Query: 265 -EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEIT-------CSRLLPVVIN 316
             W    + P++  ++++  Y        A+  +       +         + ++P  + 
Sbjct: 122 QNW--PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQ 179

Query: 317 ASKDRVPNIKFNVAKVLQSLIPIVDQSMVEK--TIRPCLVELTEDPDVDVRFFATQAIQS 374
             K   P I+ +    +   I    Q+++    +    L  L  D + +VR    +A+  
Sbjct: 180 FFKHSSPKIRSHAVACVNQFIISRTQALMLHIDSFTENLFALAGDEEPEVRKNVCRALVM 239

Query: 375 IDHVMMS 381
           +  V M 
Sbjct: 240 LLEVRMD 246

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 26/193 (13%), Positives = 63/193 (32%), Gaps = 10/193 (5%)

Query: 10  QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP 69
           +  +  +A++G      + + +  +A          +      ++     L  L   +  
Sbjct: 268 KSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQ 327

Query: 70  EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQH 129
             T+ D          D++      AAG           +  + H+LP +KE   +    
Sbjct: 328 TLTKQDEND-------DDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWR 380

Query: 130 VRSALASVIMGMAPLLGKDAT---IEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI 186
            R A       +            + Q +P  + L+KD    VR      + ++ +++  
Sbjct: 381 YRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE 440

Query: 187 DLLSQSLLPAIVE 199
             ++   L  +++
Sbjct: 441 AAINDVYLAPLLQ 453

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-05
 Identities = 40/285 (14%), Positives = 81/285 (28%), Gaps = 20/285 (7%)

Query: 5   QQSNDQDSVRLLAVEGCAALGKLLEPQDC----VAHILPVIVNFSQDKSWRVRYMVANQL 60
           ++    ++V+L A        +  +           I+ V+   +Q    RVR      L
Sbjct: 181 RKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNL 240

Query: 61  YELCEAVGP---EPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILP 117
            ++               L    +  ++ +  EV +      +  C            + 
Sbjct: 241 VKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD---------EEMD 291

Query: 118 CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKL 177
              E S  + Q       S       L      + Q L        D+  +        L
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCL 351

Query: 178 DQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALC- 236
             +      D++   L P I E  ++  WR R A +     +            +     
Sbjct: 352 MLLATCCEDDIVPHVL-PFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMP 410

Query: 237 --MQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI 279
             ++ ++D    +RD AA  + R+ E              +L+ +
Sbjct: 411 TLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL 455

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 8e-05
 Identities = 62/379 (16%), Positives = 115/379 (30%), Gaps = 61/379 (16%)

Query: 13  VRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPT 72
            + +A   CA +     P+     +  V    S +            + +  +    +  
Sbjct: 109 SQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDK 168

Query: 73  RMDLVPAYVRLLRDNEA--EVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDS 126
             +++ A ++ +R  E    V++AA   +             E     I+  V E +   
Sbjct: 169 SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP 228

Query: 127 SQHVRSALASVI---MGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQV 183
              VR A    +   M +     +      L  I +  +K +  +V L            
Sbjct: 229 DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQ----------- 277

Query: 184 IGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQ---WL 240
            GI+  S      +    E      +    E+     ++  + +    L     +     
Sbjct: 278 -GIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND 336

Query: 241 QDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPV 300
            D  ++   AA   L  LA     +  + H+ P + E I NP + YR   + A   +   
Sbjct: 337 DDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEG 395

Query: 301 MGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTEDP 360
                                              L P+V Q+M      P L+EL +DP
Sbjct: 396 PEPSQ------------------------------LKPLVIQAM------PTLIELMKDP 419

Query: 361 DVDVRFFATQAIQSIDHVM 379
            V VR  A   +  I  ++
Sbjct: 420 SVVVRDTAAWTVGRICELL 438

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 3/119 (2%)

Query: 49  SWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAA---GKVTKFCRI 105
                   A     L      +     ++P     +++ +   R AA    G + +    
Sbjct: 339 DDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEP 398

Query: 106 LNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKD 164
              +  +   +P + EL  D S  VR   A  +  +  LL + A  +  L   L  L +
Sbjct: 399 SQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIE 457

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 26/208 (12%), Positives = 70/208 (33%), Gaps = 15/208 (7%)

Query: 30  PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEA 89
             +    I    +        R+    A  +  + +   P     +L+   V      + 
Sbjct: 89  SPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQP 148

Query: 90  E-VRIAAAGKVTKFCRILNPEL-----AIQHILPCVKE--LSSDSSQHVRSALASVIMGM 141
           E V+ A+   +   C   +P+      +  +IL  + +   S+++S+ VR A  + +   
Sbjct: 149 ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADS 208

Query: 142 APLLGKDATIEQL----LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLL 194
              +  +   E      + +     + E  +V+      L ++       +   + Q+L 
Sbjct: 209 LIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALY 268

Query: 195 PAIVELAEDRHWRVRLAIIEYIPLLASQ 222
              +   +  + +V    +E+   +  +
Sbjct: 269 ALTIATMKSPNDKVASMTVEFWSTICEE 296

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 861

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.002
 Identities = 46/348 (13%), Positives = 100/348 (28%), Gaps = 38/348 (10%)

Query: 34  VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD--NEAEV 91
            A    ++ N        +R     QL +L      +           ++L D   + E 
Sbjct: 3   TAEFAQLLENSILSPDQNIRLTSETQLKKLSNDNFLQ-----FAGLSSQVLIDENTKLEG 57

Query: 92  RIAAAGKVTKFCRILNPELAIQHILPCVKELS---------------SDSSQHVRSALAS 136
           RI AA  +       +     Q     + ++S                     + +A A 
Sbjct: 58  RILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQ 117

Query: 137 VIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD-VRLNIISKLDQVNQVIGIDLLSQ---- 191
           +I  +A +        +L+ I +     E P+ V+   +  L  + +       +     
Sbjct: 118 LIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSS 177

Query: 192 -SLLPAIVELAEDRHW--RVRLAIIEYIPLLASQLGVGFFDDKLGALCMQW----LQDKV 244
            ++L AIV+ A+       VRLA +  +      +      +      MQ      Q + 
Sbjct: 178 NNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAED 237

Query: 245 YSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE 304
             ++ AA   L ++  ++                I              +   + +   E
Sbjct: 238 IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEE 297

Query: 305 ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPC 352
           I  +  L     +               ++ ++P +   +  +   P 
Sbjct: 298 IDIAYELAQFPQS----PLQSYNFALSSIKDVVPNLLNLLTRQNEDPE 341

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} Length = 276

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 8e-04
 Identities = 45/294 (15%), Positives = 88/294 (29%), Gaps = 45/294 (15%)

Query: 81  VRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMG 140
            RLL D+ +  RI++A       R+L      Q  +    E  SD +   R   A ++  
Sbjct: 25  FRLLDDHNSLKRISSA-------RVLQ-LRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQ 76

Query: 141 MAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL 200
           +     K         +    L D+   VR   I    Q  +     + S  ++      
Sbjct: 77  IKI--CKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCK--KNPIYSPKIVEQSQIT 132

Query: 201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAE 260
           A D+   VR A    I        +         + +    +       A A N+ +   
Sbjct: 133 AFDKSTNVRRATAFAIS------VINDKATIPLLINLLKDPNGDVRNWAAFAININKYDN 186

Query: 261 EFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD 320
               +  ++ +  +  E+                              R+L V+ +  K 
Sbjct: 187 SDIRDCFVEMLQDKNEEVRIEAIIGLSY----------------RKDKRVLSVLCDELKK 230

Query: 321 RVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVE-LTEDPDVDVRFFATQAIQ 373
               +  ++ +    L         +KT+ P L   L +  D ++   A   ++
Sbjct: 231 --NTVYDDIIEAAGELG--------DKTLLPVLDTMLYKFDDNEIITSAIDKLK 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1b3ua_	588	Constant regulatory domain of protein phosphatase	100.0
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.9
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.89
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.88
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	99.85
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.85
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.84
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.83
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.83
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	99.81
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.79
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.79
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.79
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.74
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.74
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.73
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.7
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.63
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	99.59
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.46
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	99.43
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.37
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.26
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	99.24
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.11
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.04
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.01
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	99.0
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	98.11
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	97.93
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.71
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	96.25
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	95.54
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	94.15
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	93.83
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	93.34
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	92.41
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	92.05
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	91.79
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.54
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	91.14
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	90.18
d2b6ca1	213	Hypothetical protein EF3068 {Enterococcus faecalis	89.38
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	89.04
d1w9ca_	321	Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [Tax	83.74
d1elka_	153	Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}	81.93

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.6e-44  Score=335.83  Aligned_cols=374  Identities=45%  Similarity=0.739  Sum_probs=308.3

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ..|++|+++.||+.++..++.++...+.+..++.++|.+.++.+|+++.||..++.+++.++..++.+.....++|.+.+
T Consensus       170 ~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~  249 (588)
T d1b3ua_         170 RNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQ  249 (588)
T ss_dssp             HHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHH
T ss_pred             HHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHH
Confidence            45677777777777777777777777776666777777777777777777777777777777766666555566777777


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhc--------------------
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMA--------------------  142 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~--------------------  142 (382)
                      +++|++|.||.+++++++.++..++++.....++|.+..+++|+++.||..+++.++.++                    
T Consensus       250 ~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l  329 (588)
T d1b3ua_         250 AAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCI  329 (588)
T ss_dssp             HHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHH
T ss_pred             hcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHH
Confidence            777777777777777777777666666555556666666666666666666655555443                    


Q ss_pred             -----------------------cccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHH
Q 016814          143 -----------------------PLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVE  199 (382)
Q Consensus       143 -----------------------~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~  199 (382)
                                             ..+|.+...+.++|.+...++|+++++|..++.+++.+...++.+...+.++|.+..
T Consensus       330 ~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~  409 (588)
T d1b3ua_         330 KELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVE  409 (588)
T ss_dssp             HHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHH
Confidence                                   333434444667777777788888888888888888887777777777889999999


Q ss_pred             HhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhh
Q 016814          200 LAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMI  279 (382)
Q Consensus       200 ~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l  279 (382)
                      .++|++|++|..+++.++.++..+|.+.+.+.+.|.+..++.|+.+.||.+|+.+++.+++.+|.++..+.++|.+.+++
T Consensus       410 ~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~  489 (588)
T d1b3ua_         410 LAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMS  489 (588)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTT
T ss_pred             HHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999998899999999999999999999999999999999999988889999999999


Q ss_pred             cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC
Q 016814          280 NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED  359 (382)
Q Consensus       280 ~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d  359 (382)
                      .+++|.+|.+++.+++.+.+.++.+.+.++++|.+++.++|+.++||.+++++++.+...++...+...+.|.+.++.+|
T Consensus       490 ~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~L~~D  569 (588)
T d1b3ua_         490 GDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQD  569 (588)
T ss_dssp             TCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHTTC
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHHcCC
Confidence            99999999999999999999998888889999999999999999999999999999999999888889999999999999


Q ss_pred             CCccHHhHHHHHHHHHH
Q 016814          360 PDVDVRFFATQAIQSID  376 (382)
Q Consensus       360 ~~~~vr~~a~~al~~~~  376 (382)
                      +|.+||..|.+|+..++
T Consensus       570 ~d~dVr~~A~~al~~l~  586 (588)
T d1b3ua_         570 QDVDVKYFAQEALTVLS  586 (588)
T ss_dssp             SSHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHh
Confidence            99999999999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-41  Score=318.20  Aligned_cols=378  Identities=20%  Similarity=0.286  Sum_probs=332.3

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHH
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYV   81 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~   81 (382)
                      +..|.+++....|..|...++.++...++ .....+++.+.++++|+++.||+.++..++.+++.++.+.....++|.+.
T Consensus       131 i~~L~~~~~~~~r~~a~~ll~~~~~~~~~-~~~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~~~~l~~~l~  209 (588)
T d1b3ua_         131 VKRLAGGDWFTSRTSACGLFSVCYPRVSS-AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFS  209 (588)
T ss_dssp             HHHHHTCSSHHHHHHHGGGHHHHTTTSCH-HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHHHHTHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence            56788888889999999999999998776 45677899999999999999999999999999999998888889999999


Q ss_pred             HhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHh
Q 016814           82 RLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSL  161 (382)
Q Consensus        82 ~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~  161 (382)
                      ++++|+++.||..++.++..++..++.+...+.++|.+..+++|++|.||..++++++.++..++.+...+.++|.+..+
T Consensus       210 ~l~~d~~~~vr~~a~~~l~~i~~~~~~~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~l  289 (588)
T d1b3ua_         210 NLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNL  289 (588)
T ss_dssp             HHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred             HHhcCCchhhHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhhhhhhhhhhHHHHHH
Confidence            99999999999999999999999999988888999999999999999999999999999999999887778889999999


Q ss_pred             hcCCChHHHHHHHHhhHHhhhhhc-------------------------------------------hhhHhhhHHHHHH
Q 016814          162 LKDEFPDVRLNIISKLDQVNQVIG-------------------------------------------IDLLSQSLLPAIV  198 (382)
Q Consensus       162 l~d~~~~vr~~~~~~l~~~~~~~~-------------------------------------------~~~~~~~llp~l~  198 (382)
                      ++|+++.||..++.+++.++..++                                           .+...+.++|.+.
T Consensus       290 l~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~l~p~l~  369 (588)
T d1b3ua_         290 MKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFL  369 (588)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHCHHHHHHHTHHHHH
T ss_pred             HhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhccchhHHHHHHHHHHH
Confidence            999999999999888887665432                                           1112234556666


Q ss_pred             HHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhh
Q 016814          199 ELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  278 (382)
Q Consensus       199 ~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~  278 (382)
                      ..++|+++.+|..++..++.+....|.....+.++|.+...++|++|++|..++..++.++..+|.+.+.+.+.|.+..+
T Consensus       370 ~~l~d~~~~v~~~~~~~l~~~~~~~~~~~~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~  449 (588)
T d1b3ua_         370 AQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAW  449 (588)
T ss_dssp             HHHTCSCHHHHHHHHTTCHHHHHHSCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHG
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHhhcchhhhhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhh
Confidence            66667777777777777777766666666677888999999999999999999999999999999888878899999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcC
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTE  358 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~  358 (382)
                      +.|+.+.+|.+|+.+++.+++.+|.++....++|.+..+++|+++.+|.+++.+++.+...++.+.+...++|.+.++++
T Consensus       450 l~D~~~~VR~~A~~~L~~l~~~~~~~~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~~~~~~ilp~ll~~~~  529 (588)
T d1b3ua_         450 LVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAG  529 (588)
T ss_dssp             GGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHGGG
T ss_pred             ccCCchhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999988888889999999999999999999999999999988888888999999999999


Q ss_pred             CCCccHHhHHHHHHHHHHHHhc
Q 016814          359 DPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       359 d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      |+.++||..++++++.+...++
T Consensus       530 D~v~nVR~~a~~~l~~i~~~~~  551 (588)
T d1b3ua_         530 DPVANVRFNVAKSLQKIGPILD  551 (588)
T ss_dssp             CSCHHHHHHHHHHHHHHGGGSC
T ss_pred             CCCHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999876544

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.9e-22  Score=193.68  Aligned_cols=368  Identities=15%  Similarity=0.179  Sum_probs=280.4

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC--cccccchHHHHHHhcCCCc
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP--EPTRMDLVPAYVRLLRDNE   88 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~l~d~~   88 (382)
                      ..+|+.+..++..++..+++ ...+.++|.+.+.+.+++|..|++++.+++.+++...+  ......++|.+++.++|++
T Consensus       371 ~~~r~~a~~~L~~l~~~~~~-~il~~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~  449 (888)
T d1qbkb_         371 WNLRKCSAAALDVLANVYRD-ELLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKK  449 (888)
T ss_dssp             CSSHHHHHHHSTTTTTTCCS-SSHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSC
T ss_pred             hhHHHHHHHHHhhHhhhhHH-HHHHHHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCC
Confidence            35799999999888887665 45678999999999999999999999999998864432  2223568999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhc
Q 016814           89 AEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLK  163 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~  163 (382)
                      +.||.+++.+++.++..+.   .+.+...+++.+...+.|+++.||..++.++..+++..+...  ..+.+++.+...+.
T Consensus       450 ~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~  529 (888)
T d1qbkb_         450 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFS  529 (888)
T ss_dssp             HHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHh
Confidence            9999999999999987653   334556788888889999999999999999999987666432  34677888888888


Q ss_pred             CCChHHHHHHHHhhHHhhhhhchh----hHhhhHHHHHHHHhc--CCCchHHHHHHHHhHHHHhhhchhhhH--H----H
Q 016814          164 DEFPDVRLNIISKLDQVNQVIGID----LLSQSLLPAIVELAE--DRHWRVRLAIIEYIPLLASQLGVGFFD--D----K  231 (382)
Q Consensus       164 d~~~~vr~~~~~~l~~~~~~~~~~----~~~~~llp~l~~~~~--d~~~~vr~~~~~~l~~l~~~~~~~~~~--~----~  231 (382)
                      +.....+..+..+++.+....+..    .+.+.++|.+.+...  ..+...+..+++++..++...+.....  +    .
T Consensus       530 ~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~  609 (888)
T d1qbkb_         530 KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR  609 (888)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH
Confidence            888888888888888887766543    344566777666542  122234456778888887777643211  1    1


Q ss_pred             HHHHHHHHh-------------ccchhHHHHHHHHHHHHHHHHhChHH--HH--hhhHHHHHhhhcCcchHHHHHHHHHH
Q 016814          232 LGALCMQWL-------------QDKVYSIRDAAANNLKRLAEEFGPEW--AM--QHITPQVLEMINNPHYLYRMTILRAI  294 (382)
Q Consensus       232 l~~~l~~~l-------------~d~~~~vr~~a~~~l~~~~~~~~~~~--~~--~~l~~~l~~~l~~~~~~~r~~a~~~l  294 (382)
                      ++..+...+             .+++..+...+...++.+++.+|...  +.  ..+++.+...+.+.+..+|+.|..++
T Consensus       610 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~ll  689 (888)
T d1qbkb_         610 CVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALL  689 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHH
Confidence            222221111             22456677888889999998887632  22  34788888999999999999999999


Q ss_pred             HHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCc--cHHhHH
Q 016814          295 SLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDV--DVRFFA  368 (382)
Q Consensus       295 ~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~--~vr~~a  368 (382)
                      +.++..++..  .+.+.++|.+...+.++.+.++.+++.++|.++..+|.+  .+...+++.|.+.+++++.  .|+.++
T Consensus       690 gdl~~~~~~~~~~~l~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~  769 (888)
T d1qbkb_         690 GDLTKACFQHVKPCIADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENT  769 (888)
T ss_dssp             HHHHHHCGGGTGGGHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHH
Confidence            9998877765  577889999999999999999999999999999888754  2446788888887776543  489999


Q ss_pred             HHHHHHHHHHh
Q 016814          369 TQAIQSIDHVM  379 (382)
Q Consensus       369 ~~al~~~~~~~  379 (382)
                      +.+++.++...
T Consensus       770 ~~~lgrl~~~~  780 (888)
T d1qbkb_         770 AITIGRLGYVC  780 (888)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHHC
Confidence            99999887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=5.2e-20  Score=179.77  Aligned_cols=375  Identities=16%  Similarity=0.109  Sum_probs=275.9

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc---cccchH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP---TRMDLV   77 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll   77 (382)
                      ...++++++.+|..|+.+++.++.....  ....+.++|.+.+.++|+++.||..++.+++++++.+....   +...++
T Consensus       401 ~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l  480 (888)
T d1qbkb_         401 KELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLM  480 (888)
T ss_dssp             HHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHH
T ss_pred             HHhhccchhHHHHHHHHHhhhhhhhHHHHhcccchhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhH
Confidence            4567788999999999999999876533  23356788899999999999999999999999998776543   345689


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH--HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH----hHH
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE--LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD----ATI  151 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~----~~~  151 (382)
                      +.+...+.|+++.||.+|+.+|..+++..+..  .+.+.+++.+...+++.....+..+..+++.++...+..    ...
T Consensus       481 ~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~  560 (888)
T d1qbkb_         481 TELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI  560 (888)
T ss_dssp             HHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH
Confidence            99999999999999999999999999877654  345677888888888888888888888888877655432    334


Q ss_pred             HhhHHHHHHhhc---CCChHHHHHHHHhhHHhhhhhchhhH--h----hhHHHHHHHHh-------------cCCCchHH
Q 016814          152 EQLLPIFLSLLK---DEFPDVRLNIISKLDQVNQVIGIDLL--S----QSLLPAIVELA-------------EDRHWRVR  209 (382)
Q Consensus       152 ~~l~~~l~~~l~---d~~~~vr~~~~~~l~~~~~~~~~~~~--~----~~llp~l~~~~-------------~d~~~~vr  209 (382)
                      +.++|.+.+..+   +.+ ..+.....++..+...++....  .    +.++..+...+             ...+....
T Consensus       561 ~~l~~~l~~~~~~~~~~~-~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~  639 (888)
T d1qbkb_         561 QMLMPPLIQKWNMLKDED-KDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFM  639 (888)
T ss_dssp             HHHHHHHHHHHTTSCTTC-TTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHH
T ss_pred             HHHHHHHHHHHHhcccch-HHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHH
Confidence            566666665432   333 3344556677766665553211  1    11222221111             22345566


Q ss_pred             HHHHHHhHHHHhhhchhhhH----HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhhhcCcc
Q 016814          210 LAIIEYIPLLASQLGVGFFD----DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEMINNPH  283 (382)
Q Consensus       210 ~~~~~~l~~l~~~~~~~~~~----~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~l~~~~  283 (382)
                      ..+...++.+++.+|.....    ..+++.+...++|.++.||+.|...++.++..++..  .+.+.++|.+.+.+.++.
T Consensus       640 ~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l~~~~~~l~~~L~~~~  719 (888)
T d1qbkb_         640 IVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIADFMPILGTNLNPEF  719 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHTCCGGG
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCC
Confidence            77778888888777754321    247888899999999999999999999999887764  366789999999999999


Q ss_pred             hHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHHH--HHHhHHHHHHHhc
Q 016814          284 YLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQSM--VEKTIRPCLVELT  357 (382)
Q Consensus       284 ~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~~--~~~~i~~~l~~l~  357 (382)
                      +.++..++++++.++...|.+  ++.+.+++.+++.+++++.  .++.+++.++|.++...+...  +...+++.+...+
T Consensus       720 ~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~l~~~~~~~~~~l  799 (888)
T d1qbkb_         720 ISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSL  799 (888)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGGGGGTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhhHHHHHHHHHHHh
Confidence            999999999999999888765  5778899999999987654  388999999999987665432  2345555555533


Q ss_pred             CC-CCccHHhHHHHHHHHHHHH
Q 016814          358 ED-PDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       358 ~d-~~~~vr~~a~~al~~~~~~  378 (382)
                      .+ .|.+-+..|.+++..+...
T Consensus       800 ~~~~d~~ek~~~~~g~~~~i~~  821 (888)
T d1qbkb_         800 RNIRDNEEKDSAFRGICTMISV  821 (888)
T ss_dssp             TTSCCSHHHHHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHHH
Confidence            33 4555577888888777654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=8.4e-21  Score=191.25  Aligned_cols=374  Identities=14%  Similarity=0.141  Sum_probs=284.9

Q ss_pred             ccCCchHHHHHHHHHHHHHHhcc---ChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLL---EPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~---~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ++|+|+.+|..|..-+.......   ..+.....+++.+.++++|+++.||..|+++++.++..++++. ...+++.+..
T Consensus        12 ~~~~D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~L~~   90 (1207)
T d1u6gc_          12 MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-VETIVDTLCT   90 (1207)
T ss_dssp             TTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHH
T ss_pred             cCCCCHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh-HHHHHHHHHH
Confidence            57899999999987777654321   1234466789999999999999999999999999998776543 3568888888


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHH--------HHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh--HH
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPE--------LAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA--TI  151 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~--------~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~--~~  151 (382)
                      .+.++++.+|..+..++..+...++..        .....+++.+.... +..++.+|..++..++.+...+|...  ..
T Consensus        91 ~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~  170 (1207)
T d1u6gc_          91 NMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH  170 (1207)
T ss_dssp             HTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH
T ss_pred             HhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHH
Confidence            888889999999999999888766532        33445666666544 45678899999999999887777432  34


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHH-HHhcCCCchHHHHHHHHhHHHHhhhchhhh--
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIV-ELAEDRHWRVRLAIIEYIPLLASQLGVGFF--  228 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~-~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~--  228 (382)
                      +.+++.+...++++.+.||..++.+++.+....+.+.+ ..+++.+. .+..+.++.+|..++..++.++...|....  
T Consensus       171 ~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  249 (1207)
T d1u6gc_         171 PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY  249 (1207)
T ss_dssp             HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH
Confidence            67888888889999999999999999999988887666 45555554 455677888888999999999987775432  


Q ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH--HHHhhhHHHHHhh----------------------------
Q 016814          229 DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE--WAMQHITPQVLEM----------------------------  278 (382)
Q Consensus       229 ~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~~----------------------------  278 (382)
                      .+.++|.+...+.+.+.++|+.++.++..++..++.+  .+...+++.+.+.                            
T Consensus       250 l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~  329 (1207)
T d1u6gc_         250 LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDD  329 (1207)
T ss_dssp             CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------
T ss_pred             HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhh
Confidence            3678999999999999999999999999999877642  1223333333221                            


Q ss_pred             ---------hcCcchHHHHHHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH-----
Q 016814          279 ---------INNPHYLYRMTILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ-----  342 (382)
Q Consensus       279 ---------l~~~~~~~r~~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~-----  342 (382)
                               ..|.+|.+|..++.++..+....+..  .+.+.++|.+...+.|+++.||..+..+++.+....+.     
T Consensus       330 ~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~  409 (1207)
T d1u6gc_         330 QGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWL  409 (1207)
T ss_dssp             ------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC----
T ss_pred             hhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhh
Confidence                     23457999999999999998776642  46778999999999999999999999999988764321     


Q ss_pred             ----------------HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhcc
Q 016814          343 ----------------SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       343 ----------------~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                                      ......+++.+.+...+.+..+|..+...+..+....+.
T Consensus       410 ~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~  464 (1207)
T d1u6gc_         410 CDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPG  464 (1207)
T ss_dssp             --------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred             hchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcch
Confidence                            112245777788888999999999999999998877653

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.9e-19  Score=162.06  Aligned_cols=334  Identities=15%  Similarity=0.152  Sum_probs=248.8

Q ss_pred             CchHHHHHHHHHHHHHHhccCh--------------hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814            9 DQDSVRLLAVEGCAALGKLLEP--------------QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM   74 (382)
Q Consensus         9 ~~~~vR~~a~~~l~~l~~~~~~--------------~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~   74 (382)
                      .++.+|..|+..+........+              +.....+.+.+.+...+++..+| .++..++.++........+.
T Consensus        48 ~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~  126 (458)
T d1ibrb_          48 NSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRPS-SASQCVAGIACAEIPVNQWP  126 (458)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSSC-SHHHHHHHHHHHHGGGTCCT
T ss_pred             CCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHHHH-HHHHHHHHHHHHhCCcccCc
Confidence            3567999888877766543321              22344566667777777765544 56778888877655555567


Q ss_pred             chHHHHHHhcCC--CcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcC--CCchHHHHHHHHHHHhhccccCh
Q 016814           75 DLVPAYVRLLRD--NEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus        75 ~ll~~l~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .+++.+.+.+.+  .++.+|..++.+++.+.......   ...+.+++.+...+.  +.+..+|..+++++..+......
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~  206 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKA  206 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhh
Confidence            889999888765  45788999999999988766544   234456777777765  45678999999999998865543


Q ss_pred             ----HhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHH
Q 016814          148 ----DATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLA  220 (382)
Q Consensus       148 ----~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~  220 (382)
                          +.....+.+.+...++++++++|..++.++..+.+..+..   .+.+.+.+.+.....+.+..++..+++.+..++
T Consensus       207 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~  286 (458)
T d1ibrb_         207 NFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVC  286 (458)
T ss_dssp             HHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence                2234567788889999999999999999999988765532   222334555566678888899999998888776


Q ss_pred             hhhch-----------------------hhhHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhh
Q 016814          221 SQLGV-----------------------GFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQH  270 (382)
Q Consensus       221 ~~~~~-----------------------~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  270 (382)
                      .....                       ....+.+.|.+...+.       |.++.+|..+..++..++..+|.+ ....
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~  365 (458)
T d1ibrb_         287 DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPH  365 (458)
T ss_dssp             HHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTT-HHHH
T ss_pred             HHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHh-hhhH
Confidence            43211                       1123456666666543       455679999999999999988865 4567


Q ss_pred             hHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH
Q 016814          271 ITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM  344 (382)
Q Consensus       271 l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~  344 (382)
                      +++.+.+.+.+++|.+|.+++.+++.+++.++.+   .+...++|.++..++|+++.||.+|+.+++.+...++...
T Consensus       366 l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~~  442 (458)
T d1ibrb_         366 VLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAA  442 (458)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhccc
Confidence            8999999999999999999999999999776543   4678899999999999999999999999999998876543

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.4e-19  Score=180.59  Aligned_cols=376  Identities=13%  Similarity=0.155  Sum_probs=259.5

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc-------------------------------------
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ-------------------------------------   46 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~-------------------------------------   46 (382)
                      .+++|+++.||..|+++++.++...+++. ...+++.+...+.                                     
T Consensus        52 ~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~-~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~  130 (1207)
T d1u6gc_          52 KLLEDKNGEVQNLAVKCLGPLVSKVKEYQ-VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKK  130 (1207)
T ss_dssp             HHTTCSSHHHHHHHHHHHHHHHTTSCHHH-HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHhCcHhh-HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            46789999999999999999998876532 2333333333333                                     


Q ss_pred             -----------CCCHHHHHHHHHHHHHHHHHhCCcc--cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHH
Q 016814           47 -----------DKSWRVRYMVANQLYELCEAVGPEP--TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQ  113 (382)
Q Consensus        47 -----------d~~~~vR~~a~~~l~~l~~~~~~~~--~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~  113 (382)
                                 .+++.+|..++..++.+...+|...  ....+++.+...++|+++.||+.|+.+++.++..++.+.+. 
T Consensus       131 l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~~~~-  209 (1207)
T d1u6gc_         131 ITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFV-  209 (1207)
T ss_dssp             HHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CT-
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHHHHH-
Confidence                       3345555666666666666555422  12346666666777777777777777777777666554322 


Q ss_pred             hhhHhhh-hhcCCCchHHHHHHHHHHHhhccccChHh--HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhH-
Q 016814          114 HILPCVK-ELSSDSSQHVRSALASVIMGMAPLLGKDA--TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLL-  189 (382)
Q Consensus       114 ~il~~l~-~~~~d~~~~vr~~a~~~l~~l~~~~~~~~--~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~-  189 (382)
                      .+++.+. .+.++.++.+|..++.+++.++...|...  ..+.++|.+.+.++++++++|..++.++..+....+.+.. 
T Consensus       210 ~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~~~~~~  289 (1207)
T d1u6gc_         210 DLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYP  289 (1207)
T ss_dssp             THHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHH
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhChhhhhh
Confidence            2233332 33445566666677777777766555432  2367889999999999999999999999888766543211 


Q ss_pred             -hhhHHHHH-------------------------------------HHHhcCCCchHHHHHHHHhHHHHhhhchh--hhH
Q 016814          190 -SQSLLPAI-------------------------------------VELAEDRHWRVRLAIIEYIPLLASQLGVG--FFD  229 (382)
Q Consensus       190 -~~~llp~l-------------------------------------~~~~~d~~~~vr~~~~~~l~~l~~~~~~~--~~~  229 (382)
                       ...+++.+                                     .....|.+|++|..+++.+..+....+..  .+.
T Consensus       290 ~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~  369 (1207)
T d1u6gc_         290 HVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY  369 (1207)
T ss_dssp             HHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH
T ss_pred             hHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence             11222221                                     11124678999999999999998766542  233


Q ss_pred             HHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---------------------HHHhhhHHHHHhhhcCcchHHHH
Q 016814          230 DKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---------------------WAMQHITPQVLEMINNPHYLYRM  288 (382)
Q Consensus       230 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---------------------~~~~~l~~~l~~~l~~~~~~~r~  288 (382)
                      +.+.|.+...+.|.++.||..++.+++.+....+..                     .....+++.+.+.+.+++..+|.
T Consensus       370 ~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~  449 (1207)
T d1u6gc_         370 KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQ  449 (1207)
T ss_dssp             TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHH
Confidence            467888889999999999999999999998764321                     12234666777788899999999


Q ss_pred             HHHHHHHHhccccChh--hhhhhhHHHHHhhccCCCc--cHHHHHHHHHHHHhhhhhHH---HHHHhHHHHHHHhcCCCC
Q 016814          289 TILRAISLLAPVMGSE--ITCSRLLPVVINASKDRVP--NIKFNVAKVLQSLIPIVDQS---MVEKTIRPCLVELTEDPD  361 (382)
Q Consensus       289 ~a~~~l~~l~~~~~~~--~~~~~~l~~l~~~l~d~~~--~vR~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~l~~d~~  361 (382)
                      .+...+..+....+..  .+...+++.+...+.+...  .+|..++..+..+......+   .+...+.+.+.....|+.
T Consensus       450 ~~~~~l~~l~~~~~~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~  529 (1207)
T d1u6gc_         450 CCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPF  529 (1207)
T ss_dssp             HHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSS
T ss_pred             HHHHHHHHHHHHcchHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHcccc
Confidence            9999999998776643  4667888888888887655  47888999998888766543   345678888888899999


Q ss_pred             ccHHhHHHHHHHHHHHHhcc
Q 016814          362 VDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       362 ~~vr~~a~~al~~~~~~~~~  381 (382)
                      +.++..+..+++.+..++++
T Consensus       530 ~~i~~~al~~~~~l~~~l~~  549 (1207)
T d1u6gc_         530 YKITSEALLVTQQLVKVIRP  549 (1207)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHhhh
Confidence            99999999999998887653

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.84  E-value=3e-18  Score=153.43  Aligned_cols=372  Identities=12%  Similarity=0.103  Sum_probs=270.8

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccCh---h-hhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCC---cccccc
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEP---Q-DCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGP---EPTRMD   75 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~---~-~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~---~~~~~~   75 (382)
                      +.++.+++..+..|+..+..+...-..   + -....++|.+.+++++ +++.+|..++.+|..++..-..   ......
T Consensus        20 ~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~~~   99 (434)
T d1q1sc_          20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGG   99 (434)
T ss_dssp             HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred             HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhhcc
Confidence            456778999999999999988654332   2 2234588888888864 5678999999999999742211   112345


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCch-----HHHHHHHHHHHhhccccC-
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQ-----HVRSALASVIMGMAPLLG-  146 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~-----~vr~~a~~~l~~l~~~~~-  146 (382)
                      .+|.+.+++.+++..++..++.+|++++..-.   ........++.+..++...+.     .....++..+..++.... 
T Consensus       100 ~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  179 (434)
T d1q1sc_         100 AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNP  179 (434)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTT
T ss_pred             chhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccc
Confidence            89999999999999999999999999875321   112334566777776654332     223445556666654332 


Q ss_pred             --hHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814          147 --KDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  221 (382)
Q Consensus       147 --~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  221 (382)
                        .......++|.+..++++++++++..++.++..+...-...   .....++|.+.++++++++.++..++..+..++.
T Consensus       180 ~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~  259 (434)
T d1q1sc_         180 APPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVT  259 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHh
Confidence              22234678899999999999999999999999886542211   1124578999999999999999999999998875


Q ss_pred             hhc---hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHH
Q 016814          222 QLG---VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAIS  295 (382)
Q Consensus       222 ~~~---~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~  295 (382)
                      .-.   ...+...+++.+..++.+++.++|..++..+..++.....   ......++|.+...+.++++.+|..++.+++
T Consensus       260 ~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~  339 (434)
T d1q1sc_         260 GTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAIT  339 (434)
T ss_dssp             SCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHH
Confidence            321   1222334567788899999999999999999999753211   1234568899999999999999999999999


Q ss_pred             HhccccChhh----hhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhh----HHHH-----HHhHHHHHHHhcCCCCc
Q 016814          296 LLAPVMGSEI----TCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVD----QSMV-----EKTIRPCLVELTEDPDV  362 (382)
Q Consensus       296 ~l~~~~~~~~----~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~----~~~~-----~~~i~~~l~~l~~d~~~  362 (382)
                      .++...+.+.    ....+++.+..++.++++.++..++.++..+.....    .+.+     ...+++.+..+.++++.
T Consensus       340 nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~  419 (434)
T d1q1sc_         340 NYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE  419 (434)
T ss_dssp             HHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSH
T ss_pred             HHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCH
Confidence            9987665442    234568999999999999999999999998875432    1122     23456778888899999


Q ss_pred             cHHhHHHHHHHHH
Q 016814          363 DVRFFATQAIQSI  375 (382)
Q Consensus       363 ~vr~~a~~al~~~  375 (382)
                      +|+..|.+.+...
T Consensus       420 ~i~~~a~~il~~~  432 (434)
T d1q1sc_         420 SVYKASLNLIEKY  432 (434)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887653

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.83  E-value=1.7e-17  Score=160.68  Aligned_cols=375  Identities=13%  Similarity=0.156  Sum_probs=275.0

Q ss_pred             hccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcc--ccc---chHH
Q 016814            5 QQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEP--TRM---DLVP   78 (382)
Q Consensus         5 l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~--~~~---~ll~   78 (382)
                      .+.++++.+|..++.+++.++..-.+...|+.++|.+.+.+.+ .++.+|..++.+++.+++..+...  ...   .+++
T Consensus       103 ~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wpeli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~  182 (861)
T d2bpta1         103 ALVSIEPRIANAAAQLIAAIADIELPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILI  182 (861)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHHHHhCCcCchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            3467889999999999999998755656689999998888764 457889999999999998877532  222   2444


Q ss_pred             HHHHhc--CCCcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---
Q 016814           79 AYVRLL--RDNEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---  149 (382)
Q Consensus        79 ~l~~~l--~d~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---  149 (382)
                      .+.+.+  .+.+..||..++.++..+...+...    ...+.+++.+...++++++.+|..++.++..++...+...   
T Consensus       183 ~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~  262 (861)
T d2bpta1         183 AIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPY  262 (861)
T ss_dssp             HHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444  4566899999999999988766443    3445677888889999999999999999999987655322   


Q ss_pred             HHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-------------------hhHhhhHHHHHHHHhc-------C
Q 016814          150 TIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-------------------DLLSQSLLPAIVELAE-------D  203 (382)
Q Consensus       150 ~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-------------------~~~~~~llp~l~~~~~-------d  203 (382)
                      ..+.+.+......++.++.+|..+...+..++.....                   ....+.++|.+...+.       +
T Consensus       263 l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~  342 (861)
T d2bpta1         263 MEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPED  342 (861)
T ss_dssp             HHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CC
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence            1223334455667788899999998887766543210                   0112445666666542       4


Q ss_pred             CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhhhc
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEMIN  280 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~l~  280 (382)
                      ..|..|..+...+..+....+... .+.+.+.+...+.+.+|..|.+++..++.+.+..+..   .+.+.++|.+.+.+.
T Consensus       343 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~  421 (861)
T d2bpta1         343 DDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMN  421 (861)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGG
T ss_pred             hhHHHHHHHHHHHHHHHhhcchhh-hhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhc
Confidence            567899999999999998887654 4567888888899999999999999999998766653   355678999999999


Q ss_pred             CcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH------HHHHhHH
Q 016814          281 NPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS------MVEKTIR  350 (382)
Q Consensus       281 ~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~------~~~~~i~  350 (382)
                      |+++.+|.+++.+++.+++.++..    .....+++.+.....+ ++.++..++.++..+.......      .....+.
T Consensus       422 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  500 (861)
T d2bpta1         422 DQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD-HPKVATNCSWTIINLVEQLAEATPSPIYNFYPALV  500 (861)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHH
T ss_pred             CcchhhhhHHHHHHHHHHHHhchhhhhHHhhhhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhhhcccchhhHHHhhHH
Confidence            999999999999999998876643    2445566666666655 5678888888887776654321      1223344


Q ss_pred             HHHHHhc--CCCCccHHhHHHHHHHHHHHHhcc
Q 016814          351 PCLVELT--EDPDVDVRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       351 ~~l~~l~--~d~~~~vr~~a~~al~~~~~~~~~  381 (382)
                      ..+....  .+.+..+|..+..++..+....++
T Consensus       501 ~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~  533 (861)
T d2bpta1         501 DGLIGAANRIDNEFNARASAFSALTTMVEYATD  533 (861)
T ss_dssp             HHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHH
Confidence            4444433  456678999999999988876553

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.3e-19  Score=158.63  Aligned_cols=311  Identities=16%  Similarity=0.183  Sum_probs=234.5

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC--CCHHHHHHHHHHHHHHHHHhCCccc---ccchHHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD--KSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAY   80 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d--~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l   80 (382)
                      ..++++. |+.++..+..++....+...|+.+++.+.+.+.+  .++.+|..++.+++.+.........   ...+++.+
T Consensus        98 ~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~  176 (458)
T d1ibrb_          98 LGTETYR-PSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAI  176 (458)
T ss_dssp             TTCCCSS-SCSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHH
T ss_pred             cCCCcHH-HHHHHHHHHHHHHHhCCcccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHH
Confidence            4455544 4456777888877665666788899988887754  5678899999999999987776443   34578888


Q ss_pred             HHhcCC--CcHHHHHHHHHHHHHHHHhhCH----HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HH
Q 016814           81 VRLLRD--NEAEVRIAAAGKVTKFCRILNP----ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TI  151 (382)
Q Consensus        81 ~~~l~d--~~~~VR~~a~~~l~~l~~~~~~----~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~  151 (382)
                      .+.+.+  ++..||..+++++..+......    +.....+.+.+...++++++.+|..++.++..+++..+...   ..
T Consensus       177 ~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~  256 (458)
T d1ibrb_         177 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG  256 (458)
T ss_dssp             HHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTT
T ss_pred             HHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            887764  4688999999999998765433    23445677888889999999999999999999987665321   22


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-----------------------hhHhhhHHHHHHHHh-------
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------------------DLLSQSLLPAIVELA-------  201 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-----------------------~~~~~~llp~l~~~~-------  201 (382)
                      +.+.+.+.....+.++.++..++..+..+++....                       ....+.+.|.+.+..       
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  336 (458)
T d1ibrb_         257 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND  336 (458)
T ss_dssp             TTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhh
Confidence            44556666777888999999999888777543211                       011234556555554       


Q ss_pred             cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhh
Q 016814          202 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM  278 (382)
Q Consensus       202 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~  278 (382)
                      .+.+|.+|..+...+..++...|.+. .+.+++.+.+.+++++|.+|.+|+.+++.+++..+++   .+...++|.+...
T Consensus       337 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~~l~~i~~~l~~~  415 (458)
T d1ibrb_         337 DDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  415 (458)
T ss_dssp             CTTCCSHHHHHHHHHHHHHHHTTTTH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTTTTHHHHHHHG
T ss_pred             ccccccHHHHHHHHHHHHHHhccHhh-hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence            35567899999999999998888664 4689999999999999999999999999998765443   3567799999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhc
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINAS  318 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l  318 (382)
                      +.|+++.+|.+|+++++.+++.++........+|.++..+
T Consensus       416 l~d~~~~VR~~a~~~l~~i~~~~~~~~~~~~~l~~ll~~l  455 (458)
T d1ibrb_         416 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCL  455 (458)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHGGGGCCSTTTHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH
Confidence            9999999999999999999988876544455566555543

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.81  E-value=1e-16  Score=155.14  Aligned_cols=369  Identities=13%  Similarity=0.091  Sum_probs=263.9

Q ss_pred             chHHHHHHHHHHHHHHhccC---------------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCccccc
Q 016814           10 QDSVRLLAVEGCAALGKLLE---------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRM   74 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~---------------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~   74 (382)
                      ++.+|..|+-.+........               +......+...+.+.+.+++..+|..++.+++.++..-.++..++
T Consensus        54 ~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~wp  133 (861)
T d2bpta1          54 KLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAWP  133 (861)
T ss_dssp             CHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCCH
T ss_pred             CHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCchH
Confidence            45677777665554433211               112233445556667788999999999999999987655544567


Q ss_pred             chHHHHHHhcCCCc-HHHHHHHHHHHHHHHHhhCHH-----HHHHhhhHhhhhhc--CCCchHHHHHHHHHHHhhccccC
Q 016814           75 DLVPAYVRLLRDNE-AEVRIAAAGKVTKFCRILNPE-----LAIQHILPCVKELS--SDSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus        75 ~ll~~l~~~l~d~~-~~VR~~a~~~l~~l~~~~~~~-----~~~~~il~~l~~~~--~d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      +++|.+.+.+.+++ ..+|..++.+++.+++..+..     .....+++.+...+  .+.+..+|..++.++..+...++
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  213 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHh
Confidence            89999999887654 678999999999998776543     11123334343333  46678999999999999887665


Q ss_pred             hH----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhh---HhhhHHHHHHHHhcCCCchHHHHHHHHhHHH
Q 016814          147 KD----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDL---LSQSLLPAIVELAEDRHWRVRLAIIEYIPLL  219 (382)
Q Consensus       147 ~~----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~---~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l  219 (382)
                      ..    .....+++.+.+.++++++.+|..+..++..+....+...   +.+.+.+.+....++.++.+|..+.+.+..+
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l  293 (861)
T d2bpta1         214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI  293 (861)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred             HhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHH
Confidence            32    2346677888899999999999999999999987765321   1122233344556788889999998888776


Q ss_pred             Hhhhch-------------------hhhHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhhhHH
Q 016814          220 ASQLGV-------------------GFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHITP  273 (382)
Q Consensus       220 ~~~~~~-------------------~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~  273 (382)
                      +.....                   ......++|.+...+.       +.++.+|..+..++..+....|.+. ...+.+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~  372 (861)
T d2bpta1         294 CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLE  372 (861)
T ss_dssp             HHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGG-HHHHHH
T ss_pred             HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhh-hhhhcc
Confidence            543210                   1112456666666654       3457899999999999998887653 345677


Q ss_pred             HHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----HHH
Q 016814          274 QVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----MVE  346 (382)
Q Consensus       274 ~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~~~  346 (382)
                      .+...+.+.+|..|.+++.+++.+.+.++..   .+.+.++|.+...+.|+++.||..++.+++.+...++..    ...
T Consensus       373 ~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~  452 (861)
T d2bpta1         373 FVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL  452 (861)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhhhHHhh
Confidence            7777888999999999999999999877754   466788999999999999999999999999998877643    223


Q ss_pred             HhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHhc
Q 016814          347 KTIRPCLVELTEDPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       347 ~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      ..+++.+.....+ ++.++..+..++..+...+.
T Consensus       453 ~~ll~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~  485 (861)
T d2bpta1         453 PGVVQACLIGLQD-HPKVATNCSWTIINLVEQLA  485 (861)
T ss_dssp             HHHHHHHHHHHTS-CHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhHHHHhcccc-ChHHHHHHHHHHHHHHHHhh
Confidence            4455555554443 66778888888877776554

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=3.6e-17  Score=146.28  Aligned_cols=338  Identities=13%  Similarity=0.073  Sum_probs=249.4

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCCC-cHHHHHHHHHHHHHHHHhhCH---HHHH
Q 016814           41 IVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRDN-EAEVRIAAAGKVTKFCRILNP---ELAI  112 (382)
Q Consensus        41 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~  112 (382)
                      +.+.++++++..+..|+..+.++...-...    .....++|.+++++++. ++.||..++.+|..++..-+.   ....
T Consensus        18 lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~~~~i~~   97 (434)
T d1q1sc_          18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVD   97 (434)
T ss_dssp             HHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhhhhHhhh
Confidence            345678889999999999999887543332    12346899999999754 578999999999999753222   1344


Q ss_pred             HhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCCh-----HHHHHHHHhhHHhhhhh
Q 016814          113 QHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEFP-----DVRLNIISKLDQVNQVI  184 (382)
Q Consensus       113 ~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~-----~vr~~~~~~l~~~~~~~  184 (382)
                      ...+|.+.++++++++.++..++.+++.++..-..  + ......++.+..++...+.     .....++..+..+...-
T Consensus        98 ~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~  177 (434)
T d1q1sc_          98 GGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNK  177 (434)
T ss_dssp             TTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCC
T ss_pred             ccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcc
Confidence            57899999999999999999999999998753221  1 1234667777777765432     22233444454444322


Q ss_pred             c---hhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Q 016814          185 G---IDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDKLGALCMQWLQDKVYSIRDAAANNLKRL  258 (382)
Q Consensus       185 ~---~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~  258 (382)
                      .   .-.....++|.+..++.++++.++..++.++..++..-...   .....++|.+..++.+++++++..++.+++.+
T Consensus       178 ~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l  257 (434)
T d1q1sc_         178 NPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI  257 (434)
T ss_dssp             TTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhH
Confidence            1   11223678899999999999999999999999886532211   12234778889999999999999999999988


Q ss_pred             HHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814          259 AEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKV  332 (382)
Q Consensus       259 ~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~  332 (382)
                      +..-..   ..+...+++.+.+++.+++..+|..++.++..++......   .....++|.++..+.++++.+|..++.+
T Consensus       258 ~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~  337 (434)
T d1q1sc_         258 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWA  337 (434)
T ss_dssp             TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHH
Confidence            752211   1234567778889999999999999999999998543221   2335688999999999999999999999


Q ss_pred             HHHHhhhhhHHH----HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHH
Q 016814          333 LQSLIPIVDQSM----VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       333 l~~i~~~~~~~~----~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~  378 (382)
                      ++.+....+.+.    ....+++.|..++++++++++..+..++..+...
T Consensus       338 l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         338 ITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            999987765542    2356788899999999999999999999887654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.79  E-value=4.6e-17  Score=148.53  Aligned_cols=369  Identities=10%  Similarity=0.066  Sum_probs=273.0

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccCh----hhhhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC---cccccchH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEP----QDCVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP---EPTRMDLV   77 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~----~~~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll   77 (382)
                      +..+++..+..|+..+..+...-..    ......++|.+.++++ +.++.++..++.+|.+++.....   ......++
T Consensus        85 ~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i  164 (503)
T d1wa5b_          85 LNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAV  164 (503)
T ss_dssp             HSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             hcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence            4556777788888888877643211    1233457888888876 66788999999999998842211   11224579


Q ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHHhhC---HHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---HhHH
Q 016814           78 PAYVRLLRDNEAEVRIAAAGKVTKFCRILN---PELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---DATI  151 (382)
Q Consensus        78 ~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~---~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---~~~~  151 (382)
                      |.+..++.+++..++..++.++++++....   .......+++.+..++.+.++.++..++.++..++.....   ....
T Consensus       165 ~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~  244 (503)
T d1wa5b_         165 PLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV  244 (503)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHH
Confidence            999999999999999999999999875432   1233456889999999999999999999999999854322   2234


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---  225 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---  225 (382)
                      ..++|.+..++.+.+++++..++.++..+......   ..+...++|.+..++.++++.++..++..++.++..-+.   
T Consensus       245 ~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~  324 (503)
T d1wa5b_         245 SQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ  324 (503)
T ss_dssp             GGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999888753221   122245788899999999999999999999988753322   


Q ss_pred             hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC
Q 016814          226 GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       226 ~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~  302 (382)
                      ......+++.+..++.++++.+|..++.+++.++.....   ......++|.+...+.+.++.++..+++++..++....
T Consensus       325 ~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         325 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccc
Confidence            122235788899999999999999999999998742111   11345688999999999999999999999999875433


Q ss_pred             h--h----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH-------------HH-HHhHHHHHHHhcCCCCc
Q 016814          303 S--E----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-------------MV-EKTIRPCLVELTEDPDV  362 (382)
Q Consensus       303 ~--~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-------------~~-~~~i~~~l~~l~~d~~~  362 (382)
                      .  +    .....+++.+...+...++.+...+++++..+.......             .+ ....+..+..+..+++.
T Consensus       405 ~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~~~~~~~~~~~~~~~~~~~~iee~g~~~~i~~Lq~~~~~  484 (503)
T d1wa5b_         405 QRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNEND  484 (503)
T ss_dssp             TCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCHHHHHHHHTTHHHHHHGGGGCSCH
T ss_pred             ccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHCCCHHHHHHHHcCCCH
Confidence            2  1    123457888999999888899999999998876432110             11 13456667778888999


Q ss_pred             cHHhHHHHHHHH
Q 016814          363 DVRFFATQAIQS  374 (382)
Q Consensus       363 ~vr~~a~~al~~  374 (382)
                      +|+..|.+.+..
T Consensus       485 ~i~~~A~~il~~  496 (503)
T d1wa5b_         485 KIYEKAYKIIET  496 (503)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            999888776654

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.6e-16  Score=154.21  Aligned_cols=370  Identities=17%  Similarity=0.194  Sum_probs=273.4

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhcc--CCCHHHHHHHHHHHHHHHHHhCCccc---ccchHHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQ--DKSWRVRYMVANQLYELCEAVGPEPT---RMDLVPAY   80 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~~~~---~~~ll~~l   80 (382)
                      +.++++ +|+.++.+++.++..--+...|+.++|.+.+.+.  |.+..+|..++.+++.+++.+..+..   ...+++.+
T Consensus        99 l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i  177 (876)
T d1qgra_          99 LGTETY-RPSSASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAI  177 (876)
T ss_dssp             TTTCCS-SSCHHHHHHHHHHHHHGGGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHH
T ss_pred             hcCCcH-HHHHHHHHHHHHHHHHCCccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence            334443 5667888999988864454568999999988774  44578999999999999987765432   24578888


Q ss_pred             HHhcCC--CcHHHHHHHHHHHHHHHHhhCHH----HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHh---HH
Q 016814           81 VRLLRD--NEAEVRIAAAGKVTKFCRILNPE----LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDA---TI  151 (382)
Q Consensus        81 ~~~l~d--~~~~VR~~a~~~l~~l~~~~~~~----~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~---~~  151 (382)
                      .+.+.+  ++..+|..++.++..........    ...+.+++.+...++++++.+|..+++++..++...+...   ..
T Consensus       178 ~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~  257 (876)
T d1qgra_         178 IQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG  257 (876)
T ss_dssp             HHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT
T ss_pred             HHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            887754  45789999999998887655432    3445677888889999999999999999999887665322   22


Q ss_pred             HhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhch-----------------------hhHhhhHHHHHHHHh-------
Q 016814          152 EQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGI-----------------------DLLSQSLLPAIVELA-------  201 (382)
Q Consensus       152 ~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~-----------------------~~~~~~llp~l~~~~-------  201 (382)
                      +.+.+.+.....+..+.++..++..+..++.....                       ....+.++|.+...+       
T Consensus       258 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  337 (876)
T d1qgra_         258 PALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDEND  337 (876)
T ss_dssp             TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSC
T ss_pred             HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhccccc
Confidence            45667777778888899998888776665542110                       111234556655554       


Q ss_pred             cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChH---HHHhhhHHHHHhh
Q 016814          202 EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPE---WAMQHITPQVLEM  278 (382)
Q Consensus       202 ~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~l~~~l~~~  278 (382)
                      .+..|.+|..+...+..+....+... .+.+++.+...+.+++|..|++++..++.+.+..+.+   .+...+++.+.+.
T Consensus       338 ~~~~~~~~~~a~~~l~~l~~~~~~~~-~~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~  416 (876)
T d1qgra_         338 DDDDWNPCKAAGVCLMLLATCCEDDI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIEL  416 (876)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHGGGG-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHHhhhhh-hhhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Confidence            34577899999999999998877654 4678899999999999999999999999887665543   3456788999999


Q ss_pred             hcCcchHHHHHHHHHHHHhccccChh----hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH------------
Q 016814          279 INNPHYLYRMTILRAISLLAPVMGSE----ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ------------  342 (382)
Q Consensus       279 l~~~~~~~r~~a~~~l~~l~~~~~~~----~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~------------  342 (382)
                      +.|+++.+|.+++.+++.+++.++..    .+...+++.+...+.+ ++.++..++.++..+......            
T Consensus       417 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~  495 (876)
T d1qgra_         417 MKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAAYEAADVADDQEEPA  495 (876)
T ss_dssp             HTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred             hcCCccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999998776543    3566778888888866 688999999999888754321            


Q ss_pred             ----HHHHHhHHHHHHHhcCCC---CccHHhHHHHHHHHHHHH
Q 016814          343 ----SMVEKTIRPCLVELTEDP---DVDVRFFATQAIQSIDHV  378 (382)
Q Consensus       343 ----~~~~~~i~~~l~~l~~d~---~~~vr~~a~~al~~~~~~  378 (382)
                          ..+...+++.+...+.+.   +..+|..+..++..+...
T Consensus       496 ~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~  538 (876)
T d1qgra_         496 TYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKN  538 (876)
T ss_dssp             CCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccHhHHHHHHHHHHHhhhh
Confidence                122355666777766543   456788888877766543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=4.2e-16  Score=151.25  Aligned_cols=367  Identities=14%  Similarity=0.139  Sum_probs=269.6

Q ss_pred             chHHHHHHHHHHHHHHhccC--------------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccc
Q 016814           10 QDSVRLLAVEGCAALGKLLE--------------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMD   75 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~--------------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~   75 (382)
                      +..+|..|+-.+........              ++.....+...+.+.+.+++. +|..++.+++.++..--+...+++
T Consensus        50 ~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~~~Wpe  128 (876)
T d1qgra_          50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPVNQWPE  128 (876)
T ss_dssp             CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGGTCCTT
T ss_pred             CHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCccccHH
Confidence            46799999988876654221              123345566666667666654 566688999998876433334678


Q ss_pred             hHHHHHHhcCCC--cHHHHHHHHHHHHHHHHhhCHHH---HHHhhhHhhhhhcC--CCchHHHHHHHHHHHhhccccChH
Q 016814           76 LVPAYVRLLRDN--EAEVRIAAAGKVTKFCRILNPEL---AIQHILPCVKELSS--DSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus        76 ll~~l~~~l~d~--~~~VR~~a~~~l~~l~~~~~~~~---~~~~il~~l~~~~~--d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      ++|.+.+.+.++  +..+|.+++.++..+++.+.++.   ..+.+++.+...+.  +.+..+|..++.++..........
T Consensus       129 li~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~  208 (876)
T d1qgra_         129 LIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKAN  208 (876)
T ss_dssp             HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHH
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhh
Confidence            999999988554  47899999999999998877653   33567777777664  456789999999998877655432


Q ss_pred             ----hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchh---hHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHh
Q 016814          149 ----ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGID---LLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLAS  221 (382)
Q Consensus       149 ----~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~---~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~  221 (382)
                          ...+.+++.+...+.++++.+|..+++++..+....+..   ...+.+.+.+.....+.+..++..++..+..++.
T Consensus       209 ~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         209 FDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH
Confidence                234567788888899999999999999999988765532   1223455666667778888888888877766653


Q ss_pred             hhch-----------------------hhhHHHHHHHHHHHhc-------cchhHHHHHHHHHHHHHHHHhChHHHHhhh
Q 016814          222 QLGV-----------------------GFFDDKLGALCMQWLQ-------DKVYSIRDAAANNLKRLAEEFGPEWAMQHI  271 (382)
Q Consensus       222 ~~~~-----------------------~~~~~~l~~~l~~~l~-------d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l  271 (382)
                      ....                       ....+.+.|.+...+.       +.++.+|.+|..++..+....+.+ ..+.+
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~-~~~~~  367 (876)
T d1qgra_         289 EEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD-IVPHV  367 (876)
T ss_dssp             HHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG-GHHHH
T ss_pred             HHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhh-hhhhh
Confidence            2110                       1123456666665543       345679999999999999887764 34568


Q ss_pred             HHHHHhhhcCcchHHHHHHHHHHHHhccccChh---hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH----H
Q 016814          272 TPQVLEMINNPHYLYRMTILRAISLLAPVMGSE---ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS----M  344 (382)
Q Consensus       272 ~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~---~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~----~  344 (382)
                      ++.+.+.+.+++|..|++++..++.+...++..   .+...+++.+...+.|+++.||.+++.+++.+.+.++..    .
T Consensus       368 ~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~  447 (876)
T d1qgra_         368 LPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDV  447 (876)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTT
T ss_pred             HHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchhhhhHH
Confidence            888889999999999999999999988776644   466788999999999999999999999999999876543    2


Q ss_pred             HHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHHHh
Q 016814          345 VEKTIRPCLVELTEDPDVDVRFFATQAIQSIDHVM  379 (382)
Q Consensus       345 ~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~~~  379 (382)
                      +...+++.+.....+ ++.|+..+..++..+....
T Consensus       448 ~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l~~~~  481 (876)
T d1qgra_         448 YLAPLLQCLIEGLSA-EPRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             THHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHH
Confidence            345666777766654 7889999998888876543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.79  E-value=3.3e-17  Score=137.28  Aligned_cols=253  Identities=19%  Similarity=0.139  Sum_probs=190.6

Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhH
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLL  155 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~  155 (382)
                      ..+.+.++++|+++.||..|+..|+.+..        +..+|.+..+++|+++.||..++.+|+.+....+..   +...
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchH
Confidence            46677889999999999999999987643        246788999999999999999999999887543322   2233


Q ss_pred             -HHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHH
Q 016814          156 -PIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGA  234 (382)
Q Consensus       156 -~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~  234 (382)
                       ..+..+++|+++.||..++.+++.+...-+  .....+++.+...+.|+++.+|..++..++.+..        +...+
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence             334456789999999999999998875432  2225678888888999999999988887765432        23455


Q ss_pred             HHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHH
Q 016814          235 LCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVV  314 (382)
Q Consensus       235 ~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l  314 (382)
                      .+..++.+.++.++..+...++.....  .    ....+.+...+.++++.+|..+..+++.+..        ...+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~--------~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKYD--N----SDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD--------KRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTCC--C----HHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC--------GGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhcc--c----cccchhhhhhhhhhhhhhhhhhccccchhhh--------hhhHHHH
Confidence            667778889999998888777654432  1    2355667777889999999999999877542        3567778


Q ss_pred             HhhccCCCccHHHHHHHHHHHHhhhhhHHHHHHhHHHHHHHhcCC-CCccHHhHHHHHHH
Q 016814          315 INASKDRVPNIKFNVAKVLQSLIPIVDQSMVEKTIRPCLVELTED-PDVDVRFFATQAIQ  373 (382)
Q Consensus       315 ~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~  373 (382)
                      +..+.|  +.+|..++.+|+.+..        ...+|.|.+++.+ .+.+||..|.++|.
T Consensus       225 ~~~l~d--~~vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKK--NTVYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTS--SSCCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCC--hHHHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            888876  4699999999998853        4577888876554 68899999998874

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=1.4e-16  Score=133.35  Aligned_cols=253  Identities=16%  Similarity=0.067  Sum_probs=189.2

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhh
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHIL  116 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il  116 (382)
                      -.+.+.++++|+++.||..++..|+.+..        ...+|.+.++++|+++.||..|+.+|+.+......+   ...+
T Consensus        20 ~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~~~---~~~~   88 (276)
T d1oyza_          20 NDDELFRLLDDHNSLKRISSARVLQLRGG--------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE---DNVF   88 (276)
T ss_dssp             CHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH---HHHH
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHhhCC--------HhHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc---cchH
Confidence            34456678999999999999999987642        357899999999999999999999998875433322   1222


Q ss_pred             H-hhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHH
Q 016814          117 P-CVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLP  195 (382)
Q Consensus       117 ~-~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp  195 (382)
                      + .+..+++|+++.||..++.+++.++....  ...+.+++.+...+.|+++.||..++..++.+..        ...++
T Consensus        89 ~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~~~--------~~~~~  158 (276)
T d1oyza_          89 NILNNMALNDKSACVRATAIESTAQRCKKNP--IYSPKIVEQSQITAFDKSTNVRRATAFAISVIND--------KATIP  158 (276)
T ss_dssp             HHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC-----------CCHH
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHHccccc--hhhHHHHHHHHHHhcCcchHHHHHHHHHHhhcch--------HHHHH
Confidence            3 34446789999999999999998875322  2246788999999999999999988887766542        44567


Q ss_pred             HHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHH
Q 016814          196 AIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQV  275 (382)
Q Consensus       196 ~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l  275 (382)
                      .+..++.+.++.++......+.....  +    .....+.+...+.++++.+|..+..+++.+    |.    ...+|.+
T Consensus       159 ~l~~l~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~al~~~----~~----~~~~~~L  224 (276)
T d1oyza_         159 LLINLLKDPNGDVRNWAAFAININKY--D----NSDIRDCFVEMLQDKNEEVRIEAIIGLSYR----KD----KRVLSVL  224 (276)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHTC--C----CHHHHHHHHHHTTCSCHHHHHHHHHHHHHT----TC----GGGHHHH
T ss_pred             HHHHhcccccchhhhhHHHHHHhhhc--c----ccccchhhhhhhhhhhhhhhhhhccccchh----hh----hhhHHHH
Confidence            77888889999988887776655432  1    134556677788999999999999888764    22    3467788


Q ss_pred             HhhhcCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccC-CCccHHHHHHHHHH
Q 016814          276 LEMINNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKD-RVPNIKFNVAKVLQ  334 (382)
Q Consensus       276 ~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d-~~~~vR~~a~~~l~  334 (382)
                      .+.+.|++  +|..++.+++.++.        +..+|.+...+.+ ++..||..|+++|.
T Consensus       225 ~~~l~d~~--vr~~a~~aL~~ig~--------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         225 CDELKKNT--VYDDIIEAAGELGD--------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHTSSS--CCHHHHHHHHHHCC--------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHhCChH--HHHHHHHHHHHcCC--------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            88887654  78899999988762        3577888777765 46789999999875

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=4.8e-16  Score=141.70  Aligned_cols=341  Identities=12%  Similarity=0.081  Sum_probs=257.2

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc----ccccchHHHHHHhcCC-CcHHHHHHHHHHHHHHHHhhCH---
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE----PTRMDLVPAYVRLLRD-NEAEVRIAAAGKVTKFCRILNP---  108 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~----~~~~~ll~~l~~~l~d-~~~~VR~~a~~~l~~l~~~~~~---  108 (382)
                      -++-+.+.+..++...+..++..+..+...-...    .....++|.+++++.. .++.++..|+.+|.+++..-..   
T Consensus        77 ~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~  156 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTK  156 (503)
T ss_dssp             CHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            3455556678888888888888887765321111    1234589999999974 5688999999999998753221   


Q ss_pred             HHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc
Q 016814          109 ELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG  185 (382)
Q Consensus       109 ~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~  185 (382)
                      ......++|.+..++++++..++..++.+++.++..-..  + .....+++.+..++.+.++.++..++..+..++....
T Consensus       157 ~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~  236 (503)
T d1wa5b_         157 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKK  236 (503)
T ss_dssp             HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSS
T ss_pred             HHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCc
Confidence            133456889999999999999999999999998754321  1 1235678889999999999999999999998875432


Q ss_pred             h---hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhch---hhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Q 016814          186 I---DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGV---GFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLA  259 (382)
Q Consensus       186 ~---~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~  259 (382)
                      .   ......++|.+..++.+.++.++..++..+..++.....   ......+++.+..++.++++.++..++.+++.++
T Consensus       237 ~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~  316 (503)
T d1wa5b_         237 PQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIV  316 (503)
T ss_dssp             SCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHT
T ss_pred             cchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHH
Confidence            2   123367899999999999999999999999988753321   2233457788899999999999999999999988


Q ss_pred             HHhChH---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh---hhhhhhhHHHHHhhccCCCccHHHHHHHHH
Q 016814          260 EEFGPE---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS---EITCSRLLPVVINASKDRVPNIKFNVAKVL  333 (382)
Q Consensus       260 ~~~~~~---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~---~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l  333 (382)
                      ...+..   .....+++.+..++.+++..+|..++++++.++.....   ......++|.++..+.+.+..+|..++.++
T Consensus       317 ~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l  396 (503)
T d1wa5b_         317 TGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAI  396 (503)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHH
Confidence            532211   12345788999999999999999999999998743221   123467889999999999999999999999


Q ss_pred             HHHhhhhhH--H----HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          334 QSLIPIVDQ--S----MVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       334 ~~i~~~~~~--~----~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ..+......  +    .....+++.+..++...+.++...+..++..+..
T Consensus       397 ~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d~~~~~~~L~~l~~ll~  446 (503)
T d1wa5b_         397 SNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILK  446 (503)
T ss_dssp             HHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            998865432  1    1245678888888888899999988888887754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1e-14  Score=133.64  Aligned_cols=370  Identities=12%  Similarity=0.052  Sum_probs=248.0

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccCh--hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCc---ccccchHHHH
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEP--QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPE---PTRMDLVPAY   80 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~---~~~~~ll~~l   80 (382)
                      ...+++.+|..|+.++..++..-..  .......+|.+.++++++++.++..++..|.+++...+..   ......+|.+
T Consensus        69 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L  148 (529)
T d1jdha_          69 QNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKM  148 (529)
T ss_dssp             HHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHH
Confidence            3456788999999999998763322  1223346788889999999999999999999998755442   1123578999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcC-CCchHHHHHHHHHHHhhccccChH--hHHHhh
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSS-DSSQHVRSALASVIMGMAPLLGKD--ATIEQL  154 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~--~~~~~l  154 (382)
                      +++++++++.++..++.++..++..-...   ......++.+..++. .+.+.++..++.++..++..-...  ......
T Consensus       149 v~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~  228 (529)
T d1jdha_         149 VALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGG  228 (529)
T ss_dssp             HHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTH
T ss_pred             HHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhh
Confidence            99999999999999999999987532111   223345677777664 445678989999998887533322  223567


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh---hhHHH
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG---FFDDK  231 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~---~~~~~  231 (382)
                      ++.+..++.++++.++..++.++..+.............+|.+.+++++++..++..++..+..++..-...   .....
T Consensus       229 ~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~  308 (529)
T d1jdha_         229 MQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG  308 (529)
T ss_dssp             HHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTT
T ss_pred             hhhHHHHhcccchhhhhhhhhHHHhccccccchhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhh
Confidence            788899999999999999999888776543332223567899999999999999999999988876421111   11223


Q ss_pred             HHHHHHHHhc--cchhHHHHHHHHHHHHHHHHhCh-HH-----HHhhhHHHHHhhhcCcc-hHHHHHHHHHHHHhccccC
Q 016814          232 LGALCMQWLQ--DKVYSIRDAAANNLKRLAEEFGP-EW-----AMQHITPQVLEMINNPH-YLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       232 l~~~l~~~l~--d~~~~vr~~a~~~l~~~~~~~~~-~~-----~~~~l~~~l~~~l~~~~-~~~r~~a~~~l~~l~~~~~  302 (382)
                      .++.+...+.  .+.+.+++.++.++..++..... +.     .....++.+...+.+++ +.++..++.++..++..-.
T Consensus       309 ~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~  388 (529)
T d1jdha_         309 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA  388 (529)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG
T ss_pred             hHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhh
Confidence            4555555443  34567888888888777643221 11     11233555556555433 4455555555544432110


Q ss_pred             h---------------------------------------------------------------hh--hhhhhHHHHHhh
Q 016814          303 S---------------------------------------------------------------EI--TCSRLLPVVINA  317 (382)
Q Consensus       303 ~---------------------------------------------------------------~~--~~~~~l~~l~~~  317 (382)
                      .                                                               ..  .....++.+.++
T Consensus       389 ~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~la~~~~~r~~~~~~~~i~~Lv~l  468 (529)
T d1jdha_         389 NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQL  468 (529)
T ss_dssp             GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBTTBCHHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHG
T ss_pred             hhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhcccchHHHHHHHHHHHHHHccCHHHHHHHHHCCCHHHHHHH
Confidence            0                                                               00  012245667788


Q ss_pred             ccCCCccHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCccHHhHHHHHHHHH
Q 016814          318 SKDRVPNIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDVDVRFFATQAIQSI  375 (382)
Q Consensus       318 l~d~~~~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~  375 (382)
                      +.++++.+|..++.+|..+...-...  ......++.|.++++++++.||..|..++..+
T Consensus       469 L~~~~~~v~~~a~~aL~~L~~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v~~~a~~aL~~l  528 (529)
T d1jdha_         469 LYSPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM  528 (529)
T ss_dssp             GGCSCHHHHHHHHHHHHHHTTSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHHhcChhhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            88888888988888888876543222  22345778888888889999999888888765

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.7e-15  Score=135.31  Aligned_cols=361  Identities=12%  Similarity=0.020  Sum_probs=252.3

Q ss_pred             cchhccCCchHHHHHHHHHHHHHHhccChhh---hhhhhhhhhhhhcc-CCCHHHHHHHHHHHHHHHHHhCC--cccccc
Q 016814            2 IAWQQSNDQDSVRLLAVEGCAALGKLLEPQD---CVAHILPVIVNFSQ-DKSWRVRYMVANQLYELCEAVGP--EPTRMD   75 (382)
Q Consensus         2 ~~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~---~~~~ll~~l~~~~~-d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~   75 (382)
                      |.++++++++.+|..|+..+..++.......   ....++|.+..++. ..+..++..++..|..++..-..  ......
T Consensus        22 L~~lL~~~~~~v~~~A~~~l~~l~~~~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~~~~~~i~~~g  101 (529)
T d1jdha_          22 LTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSG  101 (529)
T ss_dssp             HHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSHHHHHHHHHTT
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHhccHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHCC
Confidence            4467889999999999999999987532211   12346777777775 56789999999999988642211  122335


Q ss_pred             hHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChH---h
Q 016814           76 LVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKD---A  149 (382)
Q Consensus        76 ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~  149 (382)
                      .+|.++.++.++++.++..|+.+|.+++......   ......+|.+..+++++++.++..++.++..++..-...   .
T Consensus       102 ~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  181 (529)
T d1jdha_         102 GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLII  181 (529)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            7999999999999999999999999998754422   334578899999999999999999999999987532211   1


Q ss_pred             HHHhhHHHHHHhhc-CCChHHHHHHHHhhHHhhhhhch--hhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchh
Q 016814          150 TIEQLLPIFLSLLK-DEFPDVRLNIISKLDQVNQVIGI--DLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVG  226 (382)
Q Consensus       150 ~~~~l~~~l~~~l~-d~~~~vr~~~~~~l~~~~~~~~~--~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~  226 (382)
                      .....++.+..++. .+.+.++..++..+..+...-..  .......++.+..++.+++.+++..++..+..+.......
T Consensus       182 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~  261 (529)
T d1jdha_         182 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ  261 (529)
T ss_dssp             HHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC
T ss_pred             HhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch
Confidence            12345666666664 44578888888888776532111  1122456788888999999999999999998887654443


Q ss_pred             hhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhc--CcchHHHHHHHHHHHHhcccc
Q 016814          227 FFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN--NPHYLYRMTILRAISLLAPVM  301 (382)
Q Consensus       227 ~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~--~~~~~~r~~a~~~l~~l~~~~  301 (382)
                      ......++.+.+++.+++..++..++.+++.++..-..   .......++.+...+.  .++..+++.++.++..++...
T Consensus       262 ~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~  341 (529)
T d1jdha_         262 EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  341 (529)
T ss_dssp             SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             hhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchh
Confidence            33457889999999999999999999999988742111   1123345666666553  455788899999999987554


Q ss_pred             Chh------hhhhhhHHHHHhhccCCCc-cHHHHHHHHHHHHhhhhhHH--HHHHhHHHHHHHhcCCCCc
Q 016814          302 GSE------ITCSRLLPVVINASKDRVP-NIKFNVAKVLQSLIPIVDQS--MVEKTIRPCLVELTEDPDV  362 (382)
Q Consensus       302 ~~~------~~~~~~l~~l~~~l~d~~~-~vR~~a~~~l~~i~~~~~~~--~~~~~i~~~l~~l~~d~~~  362 (382)
                      ...      ......++.+...+.++.. .++..++.++..+...-...  ......+|.+..++.+.+.
T Consensus       342 ~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~~g~i~~L~~lL~~~~~  411 (529)
T d1jdha_         342 QEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQ  411 (529)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             hcchhhhhhHHhcccchhHHHHHhccchHHHHHHHHHHHhhcchhhhhhhhhhhcccHHHHHHHHhcCCH
Confidence            322      1233457788888876554 57788888888887654332  2234566666666544333

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.46  E-value=2.3e-14  Score=114.15  Aligned_cols=184  Identities=21%  Similarity=0.239  Sum_probs=123.9

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      ..++.|+..++|..|++       +.+        ...+..+++|+++.||..++..|+       .        +.+..
T Consensus        48 ~~~l~~p~~e~Ra~Aa~-------~a~--------~~~L~~Ll~D~d~~VR~~AA~~Lp-------~--------~~L~~   97 (233)
T d1lrva_          48 VQYLADPFWERRAIAVR-------YSP--------VEALTPLIRDSDEVVRRAVAYRLP-------R--------EQLSA   97 (233)
T ss_dssp             GGGTTCSSHHHHHHHHT-------TSC--------GGGGGGGTTCSSHHHHHHHHTTSC-------S--------GGGGG
T ss_pred             HHHhcCCcHHHHHHHHh-------cCC--------HHHHHHHhcCCCHHHHHHHHHHcC-------H--------HHHHH
Confidence            45678888999966653       222        234556788999999998876542       1        34566


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhh
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLL  162 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l  162 (382)
                      +++|+++.||..++..+.               .+.+..+++|+++.||..+++.+       +.        +.+..++
T Consensus        98 L~~D~d~~VR~~aa~~l~---------------~~~L~~Ll~D~d~~VR~~aa~~~-------~~--------~~L~~L~  147 (233)
T d1lrva_          98 LMFDEDREVRITVADRLP---------------LEQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRFM  147 (233)
T ss_dssp             TTTCSCHHHHHHHHHHSC---------------TGGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGTT
T ss_pred             HhcCCChhHHHHHHhccC---------------HHHHHHHhcCCCHHHHHHHHhcc-------ch--------hHHHHHh
Confidence            778999999988765431               25567778899999998887642       11        2234667


Q ss_pred             cCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhcc
Q 016814          163 KDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQD  242 (382)
Q Consensus       163 ~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d  242 (382)
                      +|+++.||..++..++       .        +.+..+++|+++.||..++..++       .        +.+..+++|
T Consensus       148 ~D~d~~VR~~aA~~~~-------~--------~~L~~l~~D~d~~VR~~aa~~L~-------~--------~~L~~l~~D  197 (233)
T d1lrva_         148 RDEDRQVRKLVAKRLP-------E--------ESLGLMTQDPEPEVRRIVASRLR-------G--------DDLLELLHD  197 (233)
T ss_dssp             TCSCHHHHHHHHHHSC-------G--------GGGGGSTTCSSHHHHHHHHHHCC-------G--------GGGGGGGGC
T ss_pred             cCCCHHHHHHHHHhcC-------H--------HHHHHHccCCCHHHHHHHHHhcC-------c--------HHHHHHHhC
Confidence            8888888887765432       1        22445567888888888776553       1        234556788


Q ss_pred             chhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHH
Q 016814          243 KVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILR  292 (382)
Q Consensus       243 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~  292 (382)
                      ++|.||..++..++.                .++..+.|+++.||.+++.
T Consensus       198 ~d~~VR~aaae~~~~----------------~ll~~L~D~d~~VR~aA~~  231 (233)
T d1lrva_         198 PDWTVRLAAVEHASL----------------EALRELDEPDPEVRLAIAG  231 (233)
T ss_dssp             SSHHHHHHHHHHSCH----------------HHHHHCCCCCHHHHHHHHC
T ss_pred             CCHHHHHHHHHhccH----------------HHHHHhCCCCHHHHHHHHH
Confidence            888888888887773                2234567888888887763

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.43  E-value=6.6e-14  Score=111.44  Aligned_cols=186  Identities=20%  Similarity=0.265  Sum_probs=137.9

Q ss_pred             hhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhh
Q 016814           41 IVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVK  120 (382)
Q Consensus        41 l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~  120 (382)
                      -.+++.|+.|++|..+++.       .        -++.+..+++|+++.||.+++..|+               .+.+.
T Consensus        47 ~~~~l~~p~~e~Ra~Aa~~-------a--------~~~~L~~Ll~D~d~~VR~~AA~~Lp---------------~~~L~   96 (233)
T d1lrva_          47 AVQYLADPFWERRAIAVRY-------S--------PVEALTPLIRDSDEVVRRAVAYRLP---------------REQLS   96 (233)
T ss_dssp             GGGGTTCSSHHHHHHHHTT-------S--------CGGGGGGGTTCSSHHHHHHHHTTSC---------------SGGGG
T ss_pred             HHHHhcCCcHHHHHHHHhc-------C--------CHHHHHHHhcCCCHHHHHHHHHHcC---------------HHHHH
Confidence            3567889999999777642       1        1345567889999999999986643               25678


Q ss_pred             hhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHH
Q 016814          121 ELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVEL  200 (382)
Q Consensus       121 ~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~  200 (382)
                      .+++|+++.||..++..+.       .        +.+..+++|+++.||..++..+       +.        +.+..+
T Consensus        97 ~L~~D~d~~VR~~aa~~l~-------~--------~~L~~Ll~D~d~~VR~~aa~~~-------~~--------~~L~~L  146 (233)
T d1lrva_          97 ALMFDEDREVRITVADRLP-------L--------EQLEQMAADRDYLVRAYVVQRI-------PP--------GRLFRF  146 (233)
T ss_dssp             GTTTCSCHHHHHHHHHHSC-------T--------GGGGGGTTCSSHHHHHHHHHHS-------CG--------GGGGGT
T ss_pred             HHhcCCChhHHHHHHhccC-------H--------HHHHHHhcCCCHHHHHHHHhcc-------ch--------hHHHHH
Confidence            8899999999999887531       1        2345678999999999988653       11        123356


Q ss_pred             hcCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhc
Q 016814          201 AEDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMIN  280 (382)
Q Consensus       201 ~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~  280 (382)
                      ++|+++.||..++..+       +.        +.+..+++|+++.||..++..+       +.        +.+..+++
T Consensus       147 ~~D~d~~VR~~aA~~~-------~~--------~~L~~l~~D~d~~VR~~aa~~L-------~~--------~~L~~l~~  196 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRL-------PE--------ESLGLMTQDPEPEVRRIVASRL-------RG--------DDLLELLH  196 (233)
T ss_dssp             TTCSCHHHHHHHHHHS-------CG--------GGGGGSTTCSSHHHHHHHHHHC-------CG--------GGGGGGGG
T ss_pred             hcCCCHHHHHHHHHhc-------CH--------HHHHHHccCCCHHHHHHHHHhc-------Cc--------HHHHHHHh
Confidence            7899999999887643       22        2355678999999999988764       32        34556788


Q ss_pred             CcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHH
Q 016814          281 NPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKV  332 (382)
Q Consensus       281 ~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~  332 (382)
                      |++|.||.+++..+..                .++..|.|+++.||..+++.
T Consensus       197 D~d~~VR~aaae~~~~----------------~ll~~L~D~d~~VR~aA~~~  232 (233)
T d1lrva_         197 DPDWTVRLAAVEHASL----------------EALRELDEPDPEVRLAIAGR  232 (233)
T ss_dssp             CSSHHHHHHHHHHSCH----------------HHHHHCCCCCHHHHHHHHCC
T ss_pred             CCCHHHHHHHHHhccH----------------HHHHHhCCCCHHHHHHHHHh
Confidence            9999999999988873                34567899999999998753

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=5.4e-11  Score=105.42  Aligned_cols=369  Identities=10%  Similarity=0.037  Sum_probs=211.4

Q ss_pred             chhccCCchHHHHHHHHHHHHHHhccCh---hhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccch
Q 016814            3 AWQQSNDQDSVRLLAVEGCAALGKLLEP---QDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDL   76 (382)
Q Consensus         3 ~~l~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l   76 (382)
                      -+++++++|.+|..|+.+|+.++...+.   .-.....+|.+.++++++++.+|..++.+|.+++..-++   .......
T Consensus         8 v~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i~~~g~   87 (457)
T d1xm9a1           8 VQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLETRRQNG   87 (457)
T ss_dssp             HHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCC
Confidence            4678899999999999999999864432   122334678889999999999999999999999732111   1122335


Q ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHHHHhhCHH-H-HHHhhhHhhhhh---------------cCCCchHHHHHHHHHH
Q 016814           77 VPAYVRLLR-DNEAEVRIAAAGKVTKFCRILNPE-L-AIQHILPCVKEL---------------SSDSSQHVRSALASVI  138 (382)
Q Consensus        77 l~~l~~~l~-d~~~~VR~~a~~~l~~l~~~~~~~-~-~~~~il~~l~~~---------------~~d~~~~vr~~a~~~l  138 (382)
                      ++.++.++. +.++.+|..++.++..++...... . ....+.+.+..+               ....+..++..++.++
T Consensus        88 v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~a~~~l  167 (457)
T d1xm9a1          88 IREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCL  167 (457)
T ss_dssp             HHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHH
T ss_pred             hHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHHHHHHH
Confidence            777777664 467889999999999997754322 1 111222222211               2345678888898888


Q ss_pred             HhhccccChHh---HHHhhHHHHHHhhcCC------ChHHHHHHHHhhHHhhhhhchhhHhhhHHHHHHHHhcCCCchHH
Q 016814          139 MGMAPLLGKDA---TIEQLLPIFLSLLKDE------FPDVRLNIISKLDQVNQVIGIDLLSQSLLPAIVELAEDRHWRVR  209 (382)
Q Consensus       139 ~~l~~~~~~~~---~~~~l~~~l~~~l~d~------~~~vr~~~~~~l~~~~~~~~~~~~~~~llp~l~~~~~d~~~~vr  209 (382)
                      ..+........   ....+++.+.+++++.      .......+...+...........  ......+.....  +....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~  243 (457)
T d1xm9a1         168 RNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEV--PTRYRQLEYNAR--NAYTE  243 (457)
T ss_dssp             HHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHS--CCHHHHHHHTC--------
T ss_pred             HHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHH--HHHHHHHHhhhh--hhhhH
Confidence            87765332211   1123455555544321      11111122222211111100000  000011100000  00000


Q ss_pred             HHHHHHhHHHH----------------h--hhchhhhHHHHHHHHHHHhc-cchhHHHHHHHHHHHHHHHHhChH-----
Q 016814          210 LAIIEYIPLLA----------------S--QLGVGFFDDKLGALCMQWLQ-DKVYSIRDAAANNLKRLAEEFGPE-----  265 (382)
Q Consensus       210 ~~~~~~l~~l~----------------~--~~~~~~~~~~l~~~l~~~l~-d~~~~vr~~a~~~l~~~~~~~~~~-----  265 (382)
                      ......+....                .  ...........++.+...+. ..+..++..+...+..+.......     
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  323 (457)
T d1xm9a1         244 KSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS  323 (457)
T ss_dssp             ----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHH
T ss_pred             HHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHHH
Confidence            01111110000                0  00011222445666665554 446777888888877776432211     


Q ss_pred             ---HHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccCh-hhhhhhhHHHHHhhccCC------CccHHHHHHHHHHH
Q 016814          266 ---WAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGS-EITCSRLLPVVINASKDR------VPNIKFNVAKVLQS  335 (382)
Q Consensus       266 ---~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~-~~~~~~~l~~l~~~l~d~------~~~vR~~a~~~l~~  335 (382)
                         ......+|.+.+.+.++++.+|..++.++..++..-.. +......+|.++..+.+.      .++++..++.+|..
T Consensus       324 ~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~  403 (457)
T d1xm9a1         324 QLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRN  403 (457)
T ss_dssp             HHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHHH
Confidence               01235789999999999999999999999999865432 234456778888777543      24599999999999


Q ss_pred             HhhhhhHH---HHHHhHHHHHHHhcCC-CCccHHhHHHHHHHHH
Q 016814          336 LIPIVDQS---MVEKTIRPCLVELTED-PDVDVRFFATQAIQSI  375 (382)
Q Consensus       336 i~~~~~~~---~~~~~i~~~l~~l~~d-~~~~vr~~a~~al~~~  375 (382)
                      +.......   ......++.|.+++.+ .++.++..|+.++..+
T Consensus       404 l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L  447 (457)
T d1xm9a1         404 LMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM  447 (457)
T ss_dssp             HHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            87543321   2334677888887765 4678999999988865

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.26  E-value=2.6e-13  Score=96.12  Aligned_cols=109  Identities=16%  Similarity=0.257  Sum_probs=79.5

Q ss_pred             ccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcC
Q 016814            6 QSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLR   85 (382)
Q Consensus         6 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~   85 (382)
                      ++|+++.||..|++.++.+.    ++     .++.+.+.+.|+++.||..++.+|+.+.        ....+|.+.++++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~----~~-----~~~~L~~~l~d~~~~vR~~a~~~L~~~~--------~~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG----DE-----AFEPLLESLSNEDWRIRGAAAWIIGNFQ--------DERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS----ST-----THHHHHHGGGCSCHHHHHHHHHHHGGGC--------SHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC----HH-----HHHHHHHHHcCCCHHHHHHHHHHHHhcc--------hhhhHHHHHhhhc
Confidence            46888888888888776542    21     2344556778888888888888887543        1346788888888


Q ss_pred             CCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHH
Q 016814           86 DNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIM  139 (382)
Q Consensus        86 d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~  139 (382)
                      |+++.||.+++.+|+.+..        ...+|.+..+++|+++.||..++.+|.
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888888888888887632        245677778888888888888887764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.24  E-value=5.3e-13  Score=94.53  Aligned_cols=109  Identities=20%  Similarity=0.178  Sum_probs=81.3

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcC
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSS  124 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~  124 (382)
                      ++|+|+.||..++..|+.+.    +     ..++.+.+.++|+++.||..++.+|+.+..        ...+|.+.++++
T Consensus         1 L~D~~~~VR~~A~~aL~~~~----~-----~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--------~~~~~~L~~~l~   63 (111)
T d1te4a_           1 MADENKWVRRDVSTALSRMG----D-----EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------ERAVEPLIKLLE   63 (111)
T ss_dssp             CCSSCCCSSSSCCSSTTSCS----S-----TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------HHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHhC----H-----HHHHHHHHHHcCCCHHHHHHHHHHHHhcch--------hhhHHHHHhhhc
Confidence            36788888888888876532    2     246667788888888888888888875432        235677788888


Q ss_pred             CCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhH
Q 016814          125 DSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLD  178 (382)
Q Consensus       125 d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~  178 (382)
                      |+++.||..++.+|+.+..        +...|.+..+++|+++.||..++.+|.
T Consensus        64 d~~~~VR~~a~~aL~~i~~--------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          64 DDSGFVRSGAARSLEQIGG--------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HCCTHHHHHHHHHHHHHCS--------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             cchhHHHHHHHHHHHHhCc--------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            8888888888888887742        356777788888888888888887764

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.11  E-value=2.4e-07  Score=89.94  Aligned_cols=368  Identities=13%  Similarity=0.122  Sum_probs=204.2

Q ss_pred             chHHHHHHHHHHHHHHhcc-C--------hhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHH
Q 016814           10 QDSVRLLAVEGCAALGKLL-E--------PQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAY   80 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~-~--------~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l   80 (382)
                      +..+|..|+-.+....+.. .        +++....+...+.+.+.+++..+|...+.+++.++..-.++. ++.++|.+
T Consensus        50 ~~~iR~~A~i~lKn~i~~~W~~~~~~~~i~~e~k~~Ik~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-Wp~ll~~l  128 (959)
T d1wa5c_          50 PLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIKKEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-WPTLLSDL  128 (959)
T ss_dssp             CHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-CTTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-cHHHHHHH
Confidence            4579999998887766642 1        123344455555556666788999999999999998765543 68899999


Q ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHhhCH-----H------HHHHhhhHhhhhhc-------CC-Cc--------------
Q 016814           81 VRLLRDNEAEVRIAAAGKVTKFCRILNP-----E------LAIQHILPCVKELS-------SD-SS--------------  127 (382)
Q Consensus        81 ~~~l~d~~~~VR~~a~~~l~~l~~~~~~-----~------~~~~~il~~l~~~~-------~d-~~--------------  127 (382)
                      .+.++++++..+..++.++..+++....     +      .+.+.+.+.+..++       .. ..              
T Consensus       129 ~~~l~s~~~~~~~~~L~~l~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (959)
T d1wa5c_         129 ASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNILFDVLLV  208 (959)
T ss_dssp             HTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHhhhcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH
Confidence            9999998888899999999888865421     1      11112222222111       00 00              


Q ss_pred             ---------------------------------------------------hHHHHHHHHHHHhhccccChH--hHHHhh
Q 016814          128 ---------------------------------------------------QHVRSALASVIMGMAPLLGKD--ATIEQL  154 (382)
Q Consensus       128 ---------------------------------------------------~~vr~~a~~~l~~l~~~~~~~--~~~~~l  154 (382)
                                                                         ..++...++.+..+....+..  ...+.+
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~  288 (959)
T d1wa5c_         209 LIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGPMINEF  288 (959)
T ss_dssp             HHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhcccccccCchhhhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                                                               012222222222222211110  011222


Q ss_pred             HHHHHHhhc-----CCChHHHHHHHHhhHHhhhhhch-------hhHhhhHH-HHHHHHh--------------------
Q 016814          155 LPIFLSLLK-----DEFPDVRLNIISKLDQVNQVIGI-------DLLSQSLL-PAIVELA--------------------  201 (382)
Q Consensus       155 ~~~l~~~l~-----d~~~~vr~~~~~~l~~~~~~~~~-------~~~~~~ll-p~l~~~~--------------------  201 (382)
                      ++.+.+++.     .....+...++..+..+......       +.+ ..++ +.+...+                    
T Consensus       289 ~~~~~~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~l-~~i~~~li~~~~~~~~~d~e~~~~dp~~~~~~  367 (959)
T d1wa5c_         289 IQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAM-NNITEQIILPNVTLREEDVELFEDDPIEYIRR  367 (959)
T ss_dssp             HHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHH-HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhhHHHHHHHhhhhHH-HHHHHHHHHHHhcCCHHHHHHHhcchHHHHHH
Confidence            222222221     22345555555555444332111       111 1111 1111111                    


Q ss_pred             ---cCCCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHh----c--cchhHHHHHHHHHHHHHHHHhCh--------
Q 016814          202 ---EDRHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWL----Q--DKVYSIRDAAANNLKRLAEEFGP--------  264 (382)
Q Consensus       202 ---~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l----~--d~~~~vr~~a~~~l~~~~~~~~~--------  264 (382)
                         .+..+..|.++...+..++...+.... +.+.+.+...+    .  +.+|..|++++..++.+....+.        
T Consensus       368 ~~~~~~~~~~r~~a~~ll~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~  446 (959)
T d1wa5c_         368 DLEGSDTDTRRRACTDFLKELKEKNEVLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSST  446 (959)
T ss_dssp             HHHC----CHHHHHHHHHHHHHHHCHHHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCB
T ss_pred             HhhhcccccHHHHHHHHHHHHHHhccccch-HHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence               122345677888888888776654432 33444444333    2  46789999999999988743211        


Q ss_pred             ---HHHHhhhHHHHHhhh---cCcchHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhh
Q 016814          265 ---EWAMQHITPQVLEMI---NNPHYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       265 ---~~~~~~l~~~l~~~l---~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~  338 (382)
                         ..+...+.+.+...+   .++...+|..++.+++.+.+....+ ....+++.++..+.|++..||..|+.++..+..
T Consensus       447 ~~~~~~~~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~-~~~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~  525 (959)
T d1wa5c_         447 NNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKA-QLIELMPILATFLQTDEYVVYTYAAITIEKILT  525 (959)
T ss_dssp             CTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTT
T ss_pred             cchhhHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHH-HHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHH
Confidence               011222222222223   3455789999999999998877655 567899999999999999999999999999976


Q ss_pred             hhhH----------H---HHHHhHHHHHHHhcCCCCcc-----HHhHHHHHHHHHHHHhcc
Q 016814          339 IVDQ----------S---MVEKTIRPCLVELTEDPDVD-----VRFFATQAIQSIDHVMMS  381 (382)
Q Consensus       339 ~~~~----------~---~~~~~i~~~l~~l~~d~~~~-----vr~~a~~al~~~~~~~~~  381 (382)
                      ....          +   .+...++..+...+.+....     +...+..++..+...+++
T Consensus       526 ~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~  586 (959)
T d1wa5c_         526 IRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSED  586 (959)
T ss_dssp             CBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred             hhcccccchhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence            4321          1   12234444444444333322     223466777776666553

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.4e-09  Score=93.50  Aligned_cols=334  Identities=12%  Similarity=0.065  Sum_probs=188.7

Q ss_pred             hhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcc-----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH---
Q 016814           37 ILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEP-----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP---  108 (382)
Q Consensus        37 ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~-----~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~---  108 (382)
                      .+|.+.+++.++++.+|..++..|++++.  +.+.     .....+|.+++++.++++.+|..|+.+|.+++...+.   
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~--~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~   80 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCF--QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL   80 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTS--SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence            47888999999999999999999999983  3322     2234689999999999999999999999999743221   


Q ss_pred             HHHHHhhhHhhhhhc-CCCchHHHHHHHHHHHhhccccChHh-H-HHhhHHHHHHhh---------------cCCChHHH
Q 016814          109 ELAIQHILPCVKELS-SDSSQHVRSALASVIMGMAPLLGKDA-T-IEQLLPIFLSLL---------------KDEFPDVR  170 (382)
Q Consensus       109 ~~~~~~il~~l~~~~-~d~~~~vr~~a~~~l~~l~~~~~~~~-~-~~~l~~~l~~~l---------------~d~~~~vr  170 (382)
                      .......++.+..++ .+.++.+|..++.++..++....... . ...+.+.+..++               ...++.++
T Consensus        81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            122334567777765 46778899999999999986544221 1 122223322221               23467888


Q ss_pred             HHHHHhhHHhhhhhchhh---HhhhHHHHHHHHhcC------CCchHHHHHHHHhHHHHhhhchhhhHHHHHHHHHHHhc
Q 016814          171 LNIISKLDQVNQVIGIDL---LSQSLLPAIVELAED------RHWRVRLAIIEYIPLLASQLGVGFFDDKLGALCMQWLQ  241 (382)
Q Consensus       171 ~~~~~~l~~~~~~~~~~~---~~~~llp~l~~~~~d------~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~  241 (382)
                      ..++..+..+...-....   ....++|.+..++.+      ............+............ ..+.. +.....
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~-~~~~~~  238 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVP-TRYRQ-LEYNAR  238 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSC-CHHHH-HHHTC-
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHH-HHHHH-HHhhhh
Confidence            888888776654321111   012345555544421      1112222222222221111100000 00000 000000


Q ss_pred             cchhHHHHHHHHHHHHHHH------------HhC------hHHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccC
Q 016814          242 DKVYSIRDAAANNLKRLAE------------EFG------PEWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMG  302 (382)
Q Consensus       242 d~~~~vr~~a~~~l~~~~~------------~~~------~~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~  302 (382)
                        +..........+.....            ...      ........++.+...+. ..+..++..+..++..++....
T Consensus       239 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~  316 (457)
T d1xm9a1         239 --NAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG  316 (457)
T ss_dssp             -----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSS
T ss_pred             --hhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccc
Confidence              00000011111111000            000      01122345566655554 4457788888888888764433


Q ss_pred             hh--------hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHH-HHHHhHHHHHHHhcCC------CCccHHhH
Q 016814          303 SE--------ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQS-MVEKTIRPCLVELTED------PDVDVRFF  367 (382)
Q Consensus       303 ~~--------~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~-~~~~~i~~~l~~l~~d------~~~~vr~~  367 (382)
                      ..        ......+|.+...++++++.+|..++.++..+....... .+....+|.+..++.+      .+.+|+..
T Consensus       317 ~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~  396 (457)
T d1xm9a1         317 LMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSS  396 (457)
T ss_dssp             SHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHH
T ss_pred             cchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHH
Confidence            11        123457899999999999999999999999998654432 2345566777776543      23468888


Q ss_pred             HHHHHHHHH
Q 016814          368 ATQAIQSID  376 (382)
Q Consensus       368 a~~al~~~~  376 (382)
                      |..++..+.
T Consensus       397 a~~~L~~l~  405 (457)
T d1xm9a1         397 ACYTVRNLM  405 (457)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            888888765

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=4.3e-09  Score=86.37  Aligned_cols=176  Identities=13%  Similarity=0.117  Sum_probs=131.2

Q ss_pred             CCchHHHHHHHHHHHHHHhccChh-hh--hhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCC---cccccchHHHHH
Q 016814            8 NDQDSVRLLAVEGCAALGKLLEPQ-DC--VAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGP---EPTRMDLVPAYV   81 (382)
Q Consensus         8 d~~~~vR~~a~~~l~~l~~~~~~~-~~--~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~ll~~l~   81 (382)
                      ..+...|..|++.+..++...... .+  ...+.+++..+++++++.+|..++..|+.++..-+.   .......+|.++
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            446788999999999998653321 11  122444555678889999999999999999853321   122346789999


Q ss_pred             HhcC-CCcHHHHHHHHHHHHHHHHhhCHH---HHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh--H-hHHHhh
Q 016814           82 RLLR-DNEAEVRIAAAGKVTKFCRILNPE---LAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK--D-ATIEQL  154 (382)
Q Consensus        82 ~~l~-d~~~~VR~~a~~~l~~l~~~~~~~---~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--~-~~~~~l  154 (382)
                      +++. ++++.+|..++.++..++...+..   ......++.+..++.+.+..++..++.++..++..-+.  . ......
T Consensus       108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  187 (264)
T d1xqra1         108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGM  187 (264)
T ss_dssp             HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTH
T ss_pred             HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhh
Confidence            9885 677899999999999998755432   23456788899999999999999999999988754332  1 123557


Q ss_pred             HHHHHHhhcCCChHHHHHHHHhhHHhhhh
Q 016814          155 LPIFLSLLKDEFPDVRLNIISKLDQVNQV  183 (382)
Q Consensus       155 ~~~l~~~l~d~~~~vr~~~~~~l~~~~~~  183 (382)
                      +|.+..+++++++.+|..++.++..+...
T Consensus       188 v~~L~~lL~~~~~~~~~~a~~aL~~L~~~  216 (264)
T d1xqra1         188 VQQLVALVRTEHSPFHEHVLGALCSLVTD  216 (264)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhc
Confidence            89999999999999999999999888653

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=5.2e-09  Score=85.87  Aligned_cols=144  Identities=17%  Similarity=0.146  Sum_probs=96.8

Q ss_pred             HHHHHHhccchhHHHHHHHHHHHHHHHHhCh---HHHHhhhHHHHHhhhc-CcchHHHHHHHHHHHHhccccChh---hh
Q 016814          234 ALCMQWLQDKVYSIRDAAANNLKRLAEEFGP---EWAMQHITPQVLEMIN-NPHYLYRMTILRAISLLAPVMGSE---IT  306 (382)
Q Consensus       234 ~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~---~~~~~~l~~~l~~~l~-~~~~~~r~~a~~~l~~l~~~~~~~---~~  306 (382)
                      +.+..++.+++.++|..|+..++.++.....   .......+|.++.++. +++..+|..++.++..++......   ..
T Consensus        62 ~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~  141 (264)
T d1xqra1          62 LLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFL  141 (264)
T ss_dssp             HHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHH
Confidence            3344567777788888888888888753221   1233456777777774 456778888888888877554422   23


Q ss_pred             hhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhH---HHHHHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          307 CSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQ---SMVEKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       307 ~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~---~~~~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      ....++.+...+.++++.++..++.++..+......   .......+|.|..+++++++++|..|..++..++.
T Consensus       142 ~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~  215 (264)
T d1xqra1         142 RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVT  215 (264)
T ss_dssp             HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHT
T ss_pred             HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            345677777888888888888888888777654321   22334567888888888888888888888877653

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.00  E-value=6e-07  Score=87.06  Aligned_cols=361  Identities=13%  Similarity=0.079  Sum_probs=206.6

Q ss_pred             hHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhc------cCCCHHHHHHHHHHHHHHHHHhCCcc-------cccchH
Q 016814           11 DSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFS------QDKSWRVRYMVANQLYELCEAVGPEP-------TRMDLV   77 (382)
Q Consensus        11 ~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~------~d~~~~vR~~a~~~l~~l~~~~~~~~-------~~~~ll   77 (382)
                      ...|..|...+..++...+. ...+.+++.+.+.+      .+.+|..|.+++..++.+....+...       ....+.
T Consensus       375 ~~~r~~a~~ll~~l~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~e~~~~~~~al~~~~~~~~~~~~~~~~~~~~~  453 (959)
T d1wa5c_         375 DTRRRACTDFLKELKEKNEV-LVTNIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVV  453 (959)
T ss_dssp             -CHHHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHH
T ss_pred             ccHHHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHhhccCCccchHHHHHHHHHHHHHHhhhhhhhhhhhcccchhhHH
Confidence            35688888888888886643 33444555544433      35689999999999998874332110       011233


Q ss_pred             HHHHH-------hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccCh---
Q 016814           78 PAYVR-------LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGK---  147 (382)
Q Consensus        78 ~~l~~-------~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~---  147 (382)
                      +.+.+       ...++.+.+|..++..++.+.....++.. ..+++.+...++|++..||..++.++..++.....   
T Consensus       454 ~~l~~~v~~~l~~~~~~~~~lr~~~~~~i~~~~~~~~~~~~-~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~  532 (959)
T d1wa5c_         454 DFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTKAQL-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTS  532 (959)
T ss_dssp             HHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCHHHH-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSS
T ss_pred             HHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHhhccHHHH-HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhccccc
Confidence            33322       22455678999999999999988776644 57889999999999999999999999998764431   


Q ss_pred             -------Hh---HHHhhHHHHHHhhcCCChH-----HHHHHHHhhHHhhhhhchh--hHhhhHHHHHHH----HhcC-CC
Q 016814          148 -------DA---TIEQLLPIFLSLLKDEFPD-----VRLNIISKLDQVNQVIGID--LLSQSLLPAIVE----LAED-RH  205 (382)
Q Consensus       148 -------~~---~~~~l~~~l~~~l~d~~~~-----vr~~~~~~l~~~~~~~~~~--~~~~~llp~l~~----~~~d-~~  205 (382)
                             +.   ..+.++..+...+.+....     +...+..++..+....+..  .+...+++.+..    ..++ .+
T Consensus       533 ~~~~~~~~~l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~  612 (959)
T d1wa5c_         533 PAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSN  612 (959)
T ss_dssp             CCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCC
T ss_pred             chhhccHHHHHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence                   11   1233444444444332221     2234666777666655432  122344444443    3333 34


Q ss_pred             chHHHHHHHHhHHHHhhhchhh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhCh--HHHHhhhHHHHHh-hh
Q 016814          206 WRVRLAIIEYIPLLASQLGVGF---FDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGP--EWAMQHITPQVLE-MI  279 (382)
Q Consensus       206 ~~vr~~~~~~l~~l~~~~~~~~---~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~-~l  279 (382)
                      ......+.++++.+....+++.   +.+.++|.+...+..........+...+..+....+.  +.+. .+++.++. .+
T Consensus       613 ~~~~~~~~e~l~~l~~~~~~~~~~~l~~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~l~~~l~~~~~  691 (959)
T d1wa5c_         613 PRFTHYTFESIGAILNYTQRQNLPLLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQSATIPESIK-PLAQPLLAPNV  691 (959)
T ss_dssp             HHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHHCSSCCTTTG-GGHHHHTSGGG
T ss_pred             hHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhCCCccHHHH-HHHHHHhhHHH
Confidence            5677788888988887766544   3466888888888766666777788888877776542  1122 24444432 22


Q ss_pred             cCcchHHHHHHHHHHHHhccccChh-hhhhhhHHHHHhhccCCCccHHHHHHHHHHHHhhhhhHHH---HHHhHHHHHHH
Q 016814          280 NNPHYLYRMTILRAISLLAPVMGSE-ITCSRLLPVVINASKDRVPNIKFNVAKVLQSLIPIVDQSM---VEKTIRPCLVE  355 (382)
Q Consensus       280 ~~~~~~~r~~a~~~l~~l~~~~~~~-~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~---~~~~i~~~l~~  355 (382)
                      .+.. .........+..+....+.. .....++..+...+.++  ..+..+...++.+...++.+.   +...++..+.+
T Consensus       692 ~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~~~~~~~ll~~ii~~~~~~~~~~~l~~i~~~~~~  768 (959)
T d1wa5c_         692 WELK-GNIPAVTRLLKSFIKTDSSIFPDLVPVLGIFQRLIASK--AYEVHGFDLLEHIMLLIDMNRLRPYIKQIAVLLLQ  768 (959)
T ss_dssp             GCCT-TTHHHHHHHHHHHHHHHGGGCSCSHHHHHHHHHHHTCT--TTHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHH
T ss_pred             HHHh-hhHHHHHHHHHHHHHhCHHhhcchHHHHHHHHHHHCCC--cchHHHHHHHHHHHHHCchhhhHhHHHHHHHHHHH
Confidence            2222 12223333333332211111 01234555555555543  345677788888877765432   33444444444


Q ss_pred             h-cCCCCccHHhHHHHHHHHHHH
Q 016814          356 L-TEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       356 l-~~d~~~~vr~~a~~al~~~~~  377 (382)
                      . .+.....+.......+..++-
T Consensus       769 ~l~~~~~~~~~~~~~~~~~~~~~  791 (959)
T d1wa5c_         769 RLQNSKTERYVKKLTVFFGLISN  791 (959)
T ss_dssp             GGGSSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccHHHHHHHHHHHHHHHH
Confidence            3 334445555555555555543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=98.11  E-value=0.00017  Score=60.01  Aligned_cols=120  Identities=11%  Similarity=-0.002  Sum_probs=68.1

Q ss_pred             CchHHHHHHHHhHHHHhhhc------hhhhHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhh
Q 016814          205 HWRVRLAIIEYIPLLASQLG------VGFFDDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEM  278 (382)
Q Consensus       205 ~~~vr~~~~~~l~~l~~~~~------~~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~  278 (382)
                      ++.+|..++-.++.++..+-      ++.+.+.+...+.+.....+.+-+..++++||.+..        ...++.+...
T Consensus       140 ~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~~  211 (336)
T d1lsha1         140 RPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQRF  211 (336)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHTT
T ss_pred             chhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHHH
Confidence            45566666666665554331      122234455555555555666666667777776542        2345566555


Q ss_pred             hcCc-------chHHHHHHHHHHHHhccccChhhhhhhhHHHHHhhccCCCccHHHHHHHHHHH
Q 016814          279 INNP-------HYLYRMTILRAISLLAPVMGSEITCSRLLPVVINASKDRVPNIKFNVAKVLQS  335 (382)
Q Consensus       279 l~~~-------~~~~r~~a~~~l~~l~~~~~~~~~~~~~l~~l~~~l~d~~~~vR~~a~~~l~~  335 (382)
                      +.+.       ...+|..|++++..+.... +....+.+++.+.+  .+..+++|..|...+-.
T Consensus       212 l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         212 LPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             STTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHH
T ss_pred             hcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHh
Confidence            5432       3578888888887776543 33344455555554  23346788888777644

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=97.93  E-value=0.00026  Score=58.88  Aligned_cols=158  Identities=11%  Similarity=0.038  Sum_probs=82.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHhCCc--c----cccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhh
Q 016814           48 KSWRVRYMVANQLYELCEAVGPE--P----TRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKE  121 (382)
Q Consensus        48 ~~~~vR~~a~~~l~~l~~~~~~~--~----~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~  121 (382)
                      +++.+|..+.-++|.+.......  .    +.+.+...+.+..+..+.+-+..++++||+++.        ...++.+..
T Consensus       139 ~~~~l~~~a~La~gslv~~~c~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~--------p~~i~~l~~  210 (336)
T d1lsha1         139 NRPILRKTAVLGYGSLVFRYCANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ--------PNSIKKIQR  210 (336)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC--------GGGHHHHHT
T ss_pred             cchhHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccCC--------HhHHHHHHH
Confidence            45677777777777776544321  1    112344444444455556666667777776642        123344444


Q ss_pred             hcCC-------CchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhchhhHhhhHH
Q 016814          122 LSSD-------SSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIGIDLLSQSLL  194 (382)
Q Consensus       122 ~~~d-------~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~~~~~~~~ll  194 (382)
                      ++.+       ....+|..|+.++..+.... +....+.+++++.+  .++++++|..+...+...-   +.    ..++
T Consensus       211 ~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~-p~~v~~~l~~i~~n--~~e~~EvRiaA~~~lm~t~---P~----~~~l  280 (336)
T d1lsha1         211 FLPGQGKSLDEYSTRVQAEAIMALRNIAKRD-PRKVQEIVLPIFLN--VAIKSELRIRSCIVFFESK---PS----VALV  280 (336)
T ss_dssp             TSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC-HHHHHHHHHHHHHC--TTSCHHHHHHHHHHHHHTC---CC----HHHH
T ss_pred             HhcccccccccccHHHHHHHHHHHHHhhhcC-cHHHHHHHHHHHcC--CCCChHHHHHHHHHHHhcC---CC----HHHH
Confidence            4322       24567777777777765532 22233444454443  2345777777766554421   11    1222


Q ss_pred             HHHHHH-hcCCCchHHHHHHHHhHHHHhhh
Q 016814          195 PAIVEL-AEDRHWRVRLAIIEYIPLLASQL  223 (382)
Q Consensus       195 p~l~~~-~~d~~~~vr~~~~~~l~~l~~~~  223 (382)
                      ..+... -.+++..|+..+...|..+++.-
T Consensus       281 ~~i~~~l~~E~~~QV~sfv~S~l~~la~s~  310 (336)
T d1lsha1         281 SMVAVRLRREPNLQVASFVYSQMRSLSRSS  310 (336)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence            333332 25566666666666666665543

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.059  Score=42.91  Aligned_cols=186  Identities=13%  Similarity=0.071  Sum_probs=110.9

Q ss_pred             cchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCH------HHHH--HhhhHhhhhhcCCCchHHHHHHHHHHHhhccc-
Q 016814           74 MDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNP------ELAI--QHILPCVKELSSDSSQHVRSALASVIMGMAPL-  144 (382)
Q Consensus        74 ~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~------~~~~--~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~-  144 (382)
                      ..++..++..+..=+++.|+-+...+..+.+.-..      +.+.  ..++..+....++++...  .+-..|...+.. 
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl--~~G~mLREcik~e  145 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL--NCGIMLRECIRHE  145 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH--HHHHHHHHHHTSH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh--hhhHHHHHHHhhH
Confidence            45788888888888899999999999998774321      1111  235555555555444321  111111111111 


Q ss_pred             -cChHhHHHhhHHHHHHhhcCCChHHHHHHHHhhHHhhhhhc---hhhHh---hhHHHHHHHHhcCCCchHHHHHHHHhH
Q 016814          145 -LGKDATIEQLLPIFLSLLKDEFPDVRLNIISKLDQVNQVIG---IDLLS---QSLLPAIVELAEDRHWRVRLAIIEYIP  217 (382)
Q Consensus       145 -~~~~~~~~~l~~~l~~~l~d~~~~vr~~~~~~l~~~~~~~~---~~~~~---~~llp~l~~~~~d~~~~vr~~~~~~l~  217 (382)
                       +.+....+.-+--+.+.+..++.++-..+...+..+.....   .+.+.   +.+...+.+++.++|+-+|+..++.++
T Consensus       146 ~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLg  225 (330)
T d1upka_         146 PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLG  225 (330)
T ss_dssp             HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence             01111112223333456777788888887777776543221   11111   345566677888888888999888888


Q ss_pred             HHHhhhch-hhh-----HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Q 016814          218 LLASQLGV-GFF-----DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEE  261 (382)
Q Consensus       218 ~l~~~~~~-~~~-----~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~  261 (382)
                      .+.-.-.. ..+     .+.-+..++.+|+|.+..++-.|.+.+.-++.+
T Consensus       226 elLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVAN  275 (330)
T d1upka_         226 ELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  275 (330)
T ss_dssp             HHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcC
Confidence            87642221 111     145677788888888888888888888777754

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.25  E-value=0.11  Score=39.33  Aligned_cols=155  Identities=8%  Similarity=-0.030  Sum_probs=95.8

Q ss_pred             chHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCC-Cc
Q 016814           10 QDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRD-NE   88 (382)
Q Consensus        10 ~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d-~~   88 (382)
                      .|.+|..+-+.+... +    ....+.+...+..+.+.+.-+.|..++..+........     ...++.+..++.+ ++
T Consensus        29 ~P~~r~laK~~~k~~-~----~~~~~~~~~l~~~L~~~~~~E~r~~a~~ll~~~~~~~~-----~~~l~~~~~~~~~~~~   98 (213)
T d2b6ca1          29 APERQALSKQLLKES-H----TWPKEKLCQEIEAYYQKTEREYQYVAIDLALQNVQRFS-----LEEVVAFKAYVPQKAW   98 (213)
T ss_dssp             HHHHHHHTHHHHHHH-T----TSCHHHHHHHHHHHHTSSSHHHHHHHHHHHHHTGGGCC-----HHHHHHGGGGTTTTCS
T ss_pred             hHHHHHHHHHHHHhc-C----CCCHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccC-----HHHHHHHHHHHccCcc
Confidence            455555555444332 1    11134555666677777778889888888776554322     2235555555554 45


Q ss_pred             HHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhccccChHhHHHhhHHHHHHhhcCCChH
Q 016814           89 AEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLLGKDATIEQLLPIFLSLLKDEFPD  168 (382)
Q Consensus        89 ~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~l~~~l~~~l~d~~~~  168 (382)
                      |.+-...+..++.......     +...+.+.+..+|++..+|..++-+.-....    +...+.+++.+..++.|+..-
T Consensus        99 Wd~vD~~~~~i~~~~~~~~-----~~~~~~l~~w~~s~~~w~rR~aiv~~l~~~~----~~~~~~~~~~~~~~~~d~e~~  169 (213)
T d2b6ca1          99 WDSVDAWRKFFGSWVALHL-----TELPTIFALFYGAENFWNRRVALNLQLMLKE----KTNQDLLKKAIIYDRTTEEFF  169 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHSG-----GGHHHHHHHHTTCSSHHHHHHHHHTTTTCGG----GCCHHHHHHHHHHTTTCCCHH
T ss_pred             HHHHHHHHHHHHHHHHHhh-----hhHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----cccHHHHHHHHHHhCCChHHH
Confidence            7777666655544332221     2345677788888888888877554332221    222456778888888999999


Q ss_pred             HHHHHHHhhHHhhhh
Q 016814          169 VRLNIISKLDQVNQV  183 (382)
Q Consensus       169 vr~~~~~~l~~~~~~  183 (382)
                      |+.++..+|..++..
T Consensus       170 i~kAigW~Lre~~k~  184 (213)
T d2b6ca1         170 IQKAIGWSLRQYSKT  184 (213)
T ss_dssp             HHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999988887654

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.41  Score=37.96  Aligned_cols=181  Identities=9%  Similarity=0.060  Sum_probs=114.1

Q ss_pred             hhHHHHHHHHhcCCCchHHHHHHHHhHHHHhhh-chh-----hh--HHHHHHHHHHHhccchhHHHHHHHHHHHHHHH-H
Q 016814          191 QSLLPAIVELAEDRHWRVRLAIIEYIPLLASQL-GVG-----FF--DDKLGALCMQWLQDKVYSIRDAAANNLKRLAE-E  261 (382)
Q Consensus       191 ~~llp~l~~~~~d~~~~vr~~~~~~l~~l~~~~-~~~-----~~--~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~-~  261 (382)
                      ..++..+...+..=++..|+.+...+..+...- |..     .+  .+.++..+.....+++...      ..|.+.. .
T Consensus        68 ~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl------~~G~mLREc  141 (330)
T d1upka_          68 SGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIAL------NCGIMLREC  141 (330)
T ss_dssp             HSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHH------HHHHHHHHH
T ss_pred             hChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhh------hhhHHHHHH
Confidence            455666666666777888888888887776422 211     11  1456666666666554332      1111211 1


Q ss_pred             hChHH-----HHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccC---hhh---hhhhhHHHHHhhccCCCccHHHHHH
Q 016814          262 FGPEW-----AMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMG---SEI---TCSRLLPVVINASKDRVPNIKFNVA  330 (382)
Q Consensus       262 ~~~~~-----~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~---~~~---~~~~~l~~l~~~l~d~~~~vR~~a~  330 (382)
                      ...+.     +...-+-.+.++...++..+-.-|...+..+.....   .++   -.+.++..+-+++.++|+-+|..++
T Consensus       142 ik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         142 IRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             HTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             HhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            11121     112234456677788888888888888877654332   111   2345666677889999999999999


Q ss_pred             HHHHHHhhhhhHHHH------HHhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          331 KVLQSLIPIVDQSMV------EKTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       331 ~~l~~i~~~~~~~~~------~~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      +.|+.+...-.+..+      ...-+..+-.++.|....++..|...+..++.
T Consensus       222 KLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence            999999854332211      14556677778999999999999999887753

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.15  E-value=1.4  Score=37.17  Aligned_cols=56  Identities=18%  Similarity=0.209  Sum_probs=41.0

Q ss_pred             CccHHHHHHHHHHHHhhhhhHHH--HH-HhHHHHHHHhcCCCCccHHhHHHHHHHHHHH
Q 016814          322 VPNIKFNVAKVLQSLIPIVDQSM--VE-KTIRPCLVELTEDPDVDVRFFATQAIQSIDH  377 (382)
Q Consensus       322 ~~~vR~~a~~~l~~i~~~~~~~~--~~-~~i~~~l~~l~~d~~~~vr~~a~~al~~~~~  377 (382)
                      .+.+-..||.=+|++..+++...  .. -.....+-++++++|++||..|..|++.+..
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~  473 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG  473 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            35567778888999988876432  11 1345556667899999999999999988764

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.83  E-value=0.57  Score=32.67  Aligned_cols=73  Identities=15%  Similarity=0.127  Sum_probs=53.3

Q ss_pred             hhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhh
Q 016814          269 QHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIP  338 (382)
Q Consensus       269 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~  338 (382)
                      ...+..+...+.++++.+...|+..+..+..+||..+    ....++..+.+.+.+      .+..||..++..+..+..
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            3456667777788888888888888888888888753    234566666666653      345688889998888877


Q ss_pred             hhh
Q 016814          339 IVD  341 (382)
Q Consensus       339 ~~~  341 (382)
                      .+.
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            664

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.34  E-value=0.81  Score=31.85  Aligned_cols=68  Identities=15%  Similarity=0.143  Sum_probs=32.1

Q ss_pred             HHHhhccCCCccHHHHHHHHHHHHhhhhhHHH----HHHhHHHHHHHhcC-CCCccHHhHHHHHHHHHHHHhc
Q 016814          313 VVINASKDRVPNIKFNVAKVLQSLIPIVDQSM----VEKTIRPCLVELTE-DPDVDVRFFATQAIQSIDHVMM  380 (382)
Q Consensus       313 ~l~~~l~d~~~~vR~~a~~~l~~i~~~~~~~~----~~~~i~~~l~~l~~-d~~~~vr~~a~~al~~~~~~~~  380 (382)
                      .+.+.++++++++...|+..|..+....|...    ....++..+.++.. .++..||..+...+..++..++
T Consensus        46 al~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            34444455555555555555555555544321    11233344433322 2344555555555555555443

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.41  E-value=1.1  Score=31.01  Aligned_cols=73  Identities=16%  Similarity=0.144  Sum_probs=51.5

Q ss_pred             hhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHHhhccC------CCccHHHHHHHHHHHHhhh
Q 016814          270 HITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVINASKD------RVPNIKFNVAKVLQSLIPI  339 (382)
Q Consensus       270 ~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~~~l~d------~~~~vR~~a~~~l~~i~~~  339 (382)
                      ..+..+...+.++++.+...|+..+..+.++||..+    ....++..+.+.+.+      .++.||..++..+..++..
T Consensus        38 ~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~  117 (143)
T d1mhqa_          38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVW  117 (143)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            355566677778888888888888888888888652    234566666666653      3456888888888888877


Q ss_pred             hhH
Q 016814          340 VDQ  342 (382)
Q Consensus       340 ~~~  342 (382)
                      +..
T Consensus       118 f~~  120 (143)
T d1mhqa_         118 FPE  120 (143)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            764

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.05  E-value=1  Score=31.55  Aligned_cols=96  Identities=14%  Similarity=0.109  Sum_probs=63.7

Q ss_pred             hccchhHHHHHHHHHHHHHHHHhChHHHHhhhHHHHHhhhcCcchHHHHHHHHHHHHhccccChhh----hhhhhHHHHH
Q 016814          240 LQDKVYSIRDAAANNLKRLAEEFGPEWAMQHITPQVLEMINNPHYLYRMTILRAISLLAPVMGSEI----TCSRLLPVVI  315 (382)
Q Consensus       240 l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~l~~~~~~~~----~~~~~l~~l~  315 (382)
                      +.+++|..-...+..+..     .++ -....+..+...+.++++.+...|+..+..+.++||..+    ....++..+.
T Consensus        15 l~~~dw~~ileicD~In~-----~~~-~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~   88 (151)
T d1juqa_          15 NRQEDWEYIIGFCDQINK-----ELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELI   88 (151)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHH
Confidence            445666554444444431     111 123456667777888888888889999999888888663    2345666666


Q ss_pred             hhccC------CCccHHHHHHHHHHHHhhhhh
Q 016814          316 NASKD------RVPNIKFNVAKVLQSLIPIVD  341 (382)
Q Consensus       316 ~~l~d------~~~~vR~~a~~~l~~i~~~~~  341 (382)
                      +++..      .+..|+..++..+..+...+.
T Consensus        89 kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          89 KVVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            66653      245699999999999988775

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=91.79  E-value=0.39  Score=33.60  Aligned_cols=99  Identities=6%  Similarity=0.107  Sum_probs=66.6

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCV  119 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l  119 (382)
                      ...++||..=...|..+..     ++ ......+..+.+.+++.++.|...|+..+..+.+.+|....    ...++..+
T Consensus        17 ~~~~~dw~~il~icD~I~~-----~~-~~~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l   90 (145)
T d1dvpa1          17 LRLEPDWPSILLICDEINQ-----KD-VTPKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMF   90 (145)
T ss_dssp             TCSSCCHHHHHHHHHHHHT-----TS-SCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHhC-----CC-ccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHH
Confidence            3456777766666666541     11 12345677788888999999999999999999998876522    12344444


Q ss_pred             hhhcC-CCchHHHHHHHHHHHhhccccChH
Q 016814          120 KELSS-DSSQHVRSALASVIMGMAPLLGKD  148 (382)
Q Consensus       120 ~~~~~-d~~~~vr~~a~~~l~~l~~~~~~~  148 (382)
                      ..+++ .+...|+..++..+..++..++.+
T Consensus        91 ~~l~~~~~~~~Vk~kil~li~~W~~~f~~~  120 (145)
T d1dvpa1          91 SSFLESTPHENVRQKMLELVQTWAYAFRSS  120 (145)
T ss_dssp             HHHHHHCSCHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHHHHhCCC
Confidence            44443 345678888888888887766543

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.54  E-value=1.2  Score=30.87  Aligned_cols=96  Identities=10%  Similarity=0.050  Sum_probs=65.1

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHH----HHhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELA----IQHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~----~~~il~~l~  120 (382)
                      ..++||..=...|..+.      .........+-.+.+-+.+.++.+...|+..+..+.+.+|+..+    ...++..+.
T Consensus        21 l~~~dw~~ileicD~I~------~~~~~~k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~   94 (145)
T d1ujka_          21 NKELDWASINGFCEQLN------EDFEGPPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELI   94 (145)
T ss_dssp             CSSCCHHHHHHHHHHHT------SSTTHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHh------CCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHH
Confidence            34567755444444433      11112245677777778889999999999999999999887633    234566666


Q ss_pred             hhcCC------CchHHHHHHHHHHHhhccccC
Q 016814          121 ELSSD------SSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       121 ~~~~d------~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      .++++      .+..|+..++..+..+...++
T Consensus        95 kli~~k~~~~~~~~~Vk~kil~li~~W~~~fp  126 (145)
T d1ujka_          95 KVVSPKYLGSRTSEKVKNKILELLYSWTVGLP  126 (145)
T ss_dssp             HHHCTTTTGGGSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhhccCCCCCcHHHHHHHHHHHHHHHHHCC
Confidence            66653      456899999999988876664

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.14  E-value=3.7  Score=34.47  Aligned_cols=54  Identities=15%  Similarity=0.220  Sum_probs=27.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhChHH-HHh--hhHHHHHhhhcCcchHHHHHHHHHHHHh
Q 016814          244 VYSIRDAAANNLKRLAEEFGPEW-AMQ--HITPQVLEMINNPHYLYRMTILRAISLL  297 (382)
Q Consensus       244 ~~~vr~~a~~~l~~~~~~~~~~~-~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~l  297 (382)
                      ++.+-.-|+.-+|.+++.++... ..+  ..-..+++++.++++.||..|+.+++.+
T Consensus       415 D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            44555556666666666554321 111  1233455555566666666666665554

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=2  Score=29.68  Aligned_cols=97  Identities=7%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             ccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhhh
Q 016814           45 SQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCVK  120 (382)
Q Consensus        45 ~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l~  120 (382)
                      ...+||..=...|..+..     .++ ...+.+-.+..-+++.++.+...|+..+..+.+.+|+..+.    ..++..+.
T Consensus        14 ~~~~dw~~il~icD~I~~-----~~~-~~k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~   87 (143)
T d1mhqa_          14 MSEQDWSAIQNFCEQVNT-----DPN-GPTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELI   87 (143)
T ss_dssp             CSSCCHHHHHHHHHHHHH-----SSH-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHc-----CCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHH
Confidence            355677666666665542     111 12346667777788999999999999999999999877332    34666666


Q ss_pred             hhcCC------CchHHHHHHHHHHHhhccccCh
Q 016814          121 ELSSD------SSQHVRSALASVIMGMAPLLGK  147 (382)
Q Consensus       121 ~~~~d------~~~~vr~~a~~~l~~l~~~~~~  147 (382)
                      .++.+      .+..|+..++..+..++..++.
T Consensus        88 ~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f~~  120 (143)
T d1mhqa_          88 KVLSPKYLGSWATGKVKGRVIEILFSWTVWFPE  120 (143)
T ss_dssp             HTTCCSTTSCCCCHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHccccCCCCCCHHHHHHHHHHHHHHHHHcCC
Confidence            66653      4678999999999988876654

>d2b6ca1 a.118.1.17 (A:3-215) Hypothetical protein EF3068 {Enterococcus faecalis [TaxId: 1351]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: BC3264-like
domain: Hypothetical protein EF3068
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.38  E-value=3.1  Score=30.88  Aligned_cols=128  Identities=5%  Similarity=-0.048  Sum_probs=81.9

Q ss_pred             hhccCCchHHHHHHHHHHHHHHhccChhhhhhhhhhhhhhhccC-CCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHH
Q 016814            4 WQQSNDQDSVRLLAVEGCAALGKLLEPQDCVAHILPVIVNFSQD-KSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVR   82 (382)
Q Consensus         4 ~l~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~~~d-~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~   82 (382)
                      .|.+.+.-+.|..|+..+.........     ..++.+..++.+ ++|.+--..+..++.....-     .....+.+.+
T Consensus        57 ~L~~~~~~E~r~~a~~ll~~~~~~~~~-----~~l~~~~~~~~~~~~Wd~vD~~~~~i~~~~~~~-----~~~~~~~l~~  126 (213)
T d2b6ca1          57 AYYQKTEREYQYVAIDLALQNVQRFSL-----EEVVAFKAYVPQKAWWDSVDAWRKFFGSWVALH-----LTELPTIFAL  126 (213)
T ss_dssp             HHHTSSSHHHHHHHHHHHHHTGGGCCH-----HHHHHGGGGTTTTCSHHHHHHHHHHHHHHHHHS-----GGGHHHHHHH
T ss_pred             HHHcCchHHHHHHHHHHHHHHHhccCH-----HHHHHHHHHHccCccHHHHHHHHHHHHHHHHHh-----hhhHHHHHHH
Confidence            344555567888888877776665443     334556666653 45777666665543322211     1345677788


Q ss_pred             hcCCCcHHHHHHHHHHHHHHHHhhCHHHHHHhhhHhhhhhcCCCchHHHHHHHHHHHhhcccc
Q 016814           83 LLRDNEAEVRIAAAGKVTKFCRILNPELAIQHILPCVKELSSDSSQHVRSALASVIMGMAPLL  145 (382)
Q Consensus        83 ~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~~~il~~l~~~~~d~~~~vr~~a~~~l~~l~~~~  145 (382)
                      ...|++.-+|.+++-......+.-..+    .+++.+..++.|+...||.+...+|..++..-
T Consensus       127 w~~s~~~w~rR~aiv~~l~~~~~~~~~----~~~~~~~~~~~d~e~~i~kAigW~Lre~~k~~  185 (213)
T d2b6ca1         127 FYGAENFWNRRVALNLQLMLKEKTNQD----LLKKAIIYDRTTEEFFIQKAIGWSLRQYSKTN  185 (213)
T ss_dssp             HTTCSSHHHHHHHHHTTTTCGGGCCHH----HHHHHHHHTTTCCCHHHHHHHHHHHHHHTTTC
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHcccHH----HHHHHHHHhCCChHHHHHHHHHHHHHHHHHHC
Confidence            888888666656554443333333332    45677788899999999999999999998653

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.04  E-value=2.5  Score=29.39  Aligned_cols=97  Identities=10%  Similarity=0.082  Sum_probs=67.7

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHhh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLLRDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPCV  119 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~l  119 (382)
                      ...++||..=...|..+..     .++ .....+-.+.+-+.+.++.+...|+..+..+.+.+|...+.    ..++..+
T Consensus        14 ~l~~~dw~~ileicD~In~-----~~~-~~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l   87 (151)
T d1juqa_          14 SNRQEDWEYIIGFCDQINK-----ELE-GPQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNEL   87 (151)
T ss_dssp             TCSSCCHHHHHHHHHHHHH-----STT-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHhc-----CCc-cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHH
Confidence            3456778766666666542     122 12456777777788899999999999999999988776332    3455666


Q ss_pred             hhhcCC------CchHHHHHHHHHHHhhccccC
Q 016814          120 KELSSD------SSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       120 ~~~~~d------~~~~vr~~a~~~l~~l~~~~~  146 (382)
                      .+++..      ....|+..++..+..++..++
T Consensus        88 ~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f~  120 (151)
T d1juqa_          88 IKVVSPKYLGDRVSEKVKTKVIELLYSWTMALP  120 (151)
T ss_dssp             HHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHcccCCCCcccHHHHHHHHHHHHHHHHHcc
Confidence            666643      356799999999988887665

>d1w9ca_ a.118.1.19 (A:) Exportin-1 (Xpo1, Crm1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Exportin HEAT-like repeat
domain: Exportin-1 (Xpo1, Crm1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.74  E-value=8.8  Score=30.38  Aligned_cols=60  Identities=10%  Similarity=0.010  Sum_probs=47.9

Q ss_pred             CCchHHHHHHHHhHHHHhhhchhhh------HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHhC
Q 016814          204 RHWRVRLAIIEYIPLLASQLGVGFF------DDKLGALCMQWLQDKVYSIRDAAANNLKRLAEEFG  263 (382)
Q Consensus       204 ~~~~vr~~~~~~l~~l~~~~~~~~~------~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  263 (382)
                      +.|+.|......+..+....-+..+      .+.++..+...+++++.+|...++..+..+.....
T Consensus       134 ~yPehR~~ff~LL~~i~~~cf~~ll~lp~~qf~~vidsi~wa~kH~~~~V~~~gL~~l~~ll~n~~  199 (321)
T d1w9ca_         134 EYPEHRTNFFLLLQAVNSHCFPAFLAIPPTQFKLVLDSIIWAFKHTMRNVADTGLQILFTLLQNVA  199 (321)
T ss_dssp             CSHHHHHHHHHHHHHHHHHCTTHHHHSCHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             hChHHHHHHHHHHHHHHHHCHHHHHcCCHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHh
Confidence            5789999999999988766543322      24678888889999999999999999988887653

>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Tom1 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.93  E-value=6.2  Score=27.35  Aligned_cols=97  Identities=11%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             hccCCCHHHHHHHHHHHHHHHHHhCCcccccchHHHHHHhc-CCCcHHHHHHHHHHHHHHHHhhCHHHHH----HhhhHh
Q 016814           44 FSQDKSWRVRYMVANQLYELCEAVGPEPTRMDLVPAYVRLL-RDNEAEVRIAAAGKVTKFCRILNPELAI----QHILPC  118 (382)
Q Consensus        44 ~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~~~ll~~l~~~l-~d~~~~VR~~a~~~l~~l~~~~~~~~~~----~~il~~  118 (382)
                      .+..+||..=...|..+..     +++. ..+.+-.+.+-+ ++.++.+...|+..|..+.+.+|...+.    ..++..
T Consensus        24 ~l~~~dw~~il~icD~In~-----~~~~-~k~a~ral~krL~~~~n~~v~l~aL~LLe~~vkNCG~~fh~evas~~Fl~~   97 (153)
T d1elka_          24 SLQSEDWALNMEICDIINE-----TEEG-PKDALRAVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVES   97 (153)
T ss_dssp             TCSSCCHHHHHHHHHHHHH-----SSSH-HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHhC-----CCcC-HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHH
Confidence            3456777776666665542     2221 244566666665 4568999999999999999999876332    223332


Q ss_pred             -hhhh-c--CCCchHHHHHHHHHHHhhccccC
Q 016814          119 -VKEL-S--SDSSQHVRSALASVIMGMAPLLG  146 (382)
Q Consensus       119 -l~~~-~--~d~~~~vr~~a~~~l~~l~~~~~  146 (382)
                       +... .  .+....||..+...+..+...+.
T Consensus        98 ll~~~~~~~~~~~~~Vk~kil~li~~W~~~f~  129 (153)
T d1elka_          98 VLVRTILPKNNPPTIVHDKVLNLIQSWADAFR  129 (153)
T ss_dssp             HTHHHHSTTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccCCCCcHHHHHHHHHHHHHHHHHhc
Confidence             2222 2  23445699999999988876554