Citrus Sinensis ID: 016820

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380--
Protein Sequence
MSYRSPNGNTTLKLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSESSL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHcccccccccccccHHHHccccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccEEEEcEEEEEEcccccEEEEEcccEEEEcEEEEcccccccccccccccccccccEEEEEcccccccccccccEEEEcccHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHccccEEEEEccEEEEEEEccccccEEEEEEEEcccccEEEEEccEEEEEEcccccccccccccccccccEEEEcccccccccccEEEccccccccHHHHHHcccHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHHcccccEEEccccEccEccccHHHHccEEcccccccccEEHHHHHHHHHHHHHHcccEEEcccccEEEcccccEEEEcccEEEEEEEEEEcccEEEcccccEccHHcEcccEEccHHHHcccHHHcccEEEEEcccHHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHccccEEEEccEEEEEEEEccccccEEEEEEEEcccccEEEEEccEEEEcccEEEccHHHcccccEcccccEcccccccEcccccEEEcHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcc
Coil and Loop (DISEMBL)
msyrspngntTLKLRSLLTKARTFFGIVTTSSAAAAasfsattapkisnAMDEIQTLKTKvciigsgpaAHTAAIYAARAELKpilfegwmandiapggqltttsdvenfpgfpqgilggdlmDRCRNQSLRFGTQIFTEtvskvdfksrpfkvftdsksvlADTVIVATGAVakklqfpgsdafwnrgisacavcdgaapifrdkplavigggdsAMEEANFLTKYGSKVYIIHRRdsfraskimqnraltnpkidviWNSVVLEaygegdkkvlgglkvknlvtgqvsdlKVSGLffaighepatkfvdgqldlhsdgyiitkpgtthtsvpgvfaagdvqdkKYRQAVTAAGTGCMAALEAEHYLqeigsqedksessl
Flexible Loop (DISEMBL)
msyrspngntTLKLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFgtqiftetvskvdfksrpfkvftdsksvlaDTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDsfraskimqnraltnpkidviWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLqeigsqedksessl
Low Complexity Region (SEG)
MSYRSPNGNTTLKLRSLLTKARTFFGIVttssaaaaasfsattaPKISNAMDEIQTLKTKVCIIGSGPaahtaaiyaaraELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDkkvlgglkvknlvtgQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSESSL
Disordered region (IsUnstruct)
************KLRSLLTKARTFFGIVTT**************************LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL**************
Disordered Region (DISOPRED)
**************RSLLTKA**************************************KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ*************
Disordered Region (DISEMBL)
*********TTLKLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE************
Disordered Region (DISPRO)
*******GNTTLKLRSLLTKARTFFGIVTTSSAAAAASFSAT*********DEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQE*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSYRSPNGNTTLKLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSESSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	382	2.2.26 [Sep-21-2011]
Q39242	383	Thioredoxin reductase 2 O	yes	no	0.856	0.853	0.809	1e-161
Q39243	375	Thioredoxin reductase 1 O	no	no	0.968	0.986	0.752	1e-158
Q6ZFU6	331	Thioredoxin reductase NTR	yes	no	0.845	0.975	0.783	1e-149
Q69PS6	368	Thioredoxin reductase NTR	no	no	0.945	0.980	0.731	1e-141
Q6FR39	319	Thioredoxin reductase OS=	yes	no	0.811	0.971	0.636	1e-120
P29509	319	Thioredoxin reductase 1 O	yes	no	0.819	0.981	0.639	1e-119
Q6HA24	349	Thioredoxin reductase, mi	yes	no	0.811	0.888	0.642	1e-118
Q6C7L4	319	Thioredoxin reductase OS=	yes	no	0.806	0.965	0.627	1e-116
P38816	342	Thioredoxin reductase 2,	no	no	0.816	0.912	0.628	1e-116
Q6BIS1	321	Thioredoxin reductase OS=	yes	no	0.806	0.959	0.630	1e-115

>sp|Q39242|TRXB2_ARATH Thioredoxin reductase 2 OS=Arabidopsis thaliana GN=NTR2 PE=2 SV=2

 Score =  568 bits (1464), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 305/331 (92%), Gaps = 4/331 (1%)

Query: 53  EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG 112
           +++T KTKVCI+GSGPAAHTAAIYA+RAELKP+LFEGWMANDIAPGGQLTTT+DVENFPG
Sbjct: 53  DMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 112

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           FP+GILG D++++ R QS RFGT IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGA
Sbjct: 113 FPEGILGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGA 172

Query: 173 VAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           VAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYG
Sbjct: 173 VAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYG 232

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+ + +VLGGLKVKN+VTG 
Sbjct: 233 SKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGD 292

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYR
Sbjct: 293 VSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYR 352

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 353 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 383

Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: 8EC: .EC: 1EC: .EC: 9

>sp|Q39243|TRXB1_ARATH Thioredoxin reductase 1 OS=Arabidopsis thaliana GN=NTR1 PE=1 SV=3

 Score =  557 bits (1436), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/375 (75%), Positives = 325/375 (86%), Gaps = 5/375 (1%)

Query: 9   NTTLKLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGP 68
           N   +L+ L++KAR+F   +   S  +     A+ A   S  M+ ++T  T++CI+GSGP
Sbjct: 2   NCVSRLKCLISKARSF-ARLGGESTLSQPPSLASAAFSSSAVMNGLETHNTRLCIVGSGP 60

Query: 69  AAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRN 128
           AAHTAAIYAARAELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG +L D+ R 
Sbjct: 61  AAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRK 120

Query: 129 QSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----A 184
           QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+ATGAVAK+L F GS      
Sbjct: 121 QSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLSFVGSGEASGG 180

Query: 185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK 244
           FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD+FRASK
Sbjct: 181 FWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASK 240

Query: 245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304
           IMQ RAL+NPKIDVIWNS V+EAYG+G++ VLGGLKVKN+VTG VSDLKVSGLFFAIGHE
Sbjct: 241 IMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE 300

Query: 305 PATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA 364
           PATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKKYRQA+TAAGTGCMAAL+A
Sbjct: 301 PATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA 360

Query: 365 EHYLQEIGSQEDKSE 379
           EHYLQEIGSQ+ KS+
Sbjct: 361 EHYLQEIGSQQGKSD 375

Possesses thioredoxin-disulfide reductase activity towards thioredoxins O1, O2 and F3.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6ZFU6|NTRB_ORYSJ Thioredoxin reductase NTRB OS=Oryza sativa subsp. japonica GN=NTRB PE=2 SV=1

 Score =  526 bits (1356), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 253/323 (78%), Positives = 295/323 (91%)

Query: 57  LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
           L+T+VCIIGSGP+AHTAAIYAARAELKP+LFEGW+ANDIA GGQLTTT+DVENFPGFP+G
Sbjct: 9   LRTRVCIIGSGPSAHTAAIYAARAELKPVLFEGWLANDIAAGGQLTTTTDVENFPGFPEG 68

Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176
           ILGG+LMDRCR QSLRFGT I +ETV+ VDF +RPF+V +DS +VLAD V+VATGAVA++
Sbjct: 69  ILGGELMDRCRAQSLRFGTSIISETVTAVDFSARPFRVASDSTTVLADAVVVATGAVARR 128

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L F GSDA+WNRGISACAVCDGAAPIFR+KP+AVIGGGDSAMEE+NFLTKYGS VYIIHR
Sbjct: 129 LHFAGSDAYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEESNFLTKYGSHVYIIHR 188

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
           R++FRASKIMQ RAL+NPKI V W+S V+EAYG      L G+KVKNLVTG++SDL+VSG
Sbjct: 189 RNTFRASKIMQARALSNPKIQVFWDSEVVEAYGGEGGGPLAGVKVKNLVTGKISDLQVSG 248

Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           LFFAIGHEPATKF+ GQL+L +DGY+ TKPG+THTSV GVFAAGDVQDKKYRQA+TAAG+
Sbjct: 249 LFFAIGHEPATKFLGGQLELDADGYVATKPGSTHTSVKGVFAAGDVQDKKYRQAITAAGS 308

Query: 357 GCMAALEAEHYLQEIGSQEDKSE 379
           GCMAAL+AEHYLQE+G+QE K++
Sbjct: 309 GCMAALDAEHYLQEVGAQEGKAD 331

Possesses thioredoxin-disulfide reductase activity.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q69PS6|NTRA_ORYSJ Thioredoxin reductase NTRA OS=Oryza sativa subsp. japonica GN=Os06g0327300 PE=2 SV=2

 Score =  503 bits (1295), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 270/369 (73%), Positives = 318/369 (86%), Gaps = 8/369 (2%)

Query: 13  KLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQT--LKTKVCIIGSGPAA 70
           KL +LL ++R F      + AAAAAS SAT A   +N M+E     L+ +VCIIGSGPAA
Sbjct: 6   KLAALLRRSRQF------APAAAAASGSATAAAASANGMEEAAAGPLRARVCIIGSGPAA 59

Query: 71  HTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS 130
           HTAA+YAARAELKP+LFEG++ANDIA GGQLTTT+DVENFPGFP GILG DLMDRCR QS
Sbjct: 60  HTAAVYAARAELKPVLFEGFLANDIAAGGQLTTTTDVENFPGFPDGILGADLMDRCRAQS 119

Query: 131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGI 190
           +RFGT+I TETV+ VD  SRPF+V +    V AD V+VATGAVA++L F GSDAFWNRGI
Sbjct: 120 VRFGTRILTETVTAVDLSSRPFRVASGDTVVHADAVVVATGAVARRLHFAGSDAFWNRGI 179

Query: 191 SACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA 250
           SACAVCDGAAPIFR+KP+AV+GGGDSAMEEANFLTKYGS+VYIIHRR++FRASKIMQ RA
Sbjct: 180 SACAVCDGAAPIFRNKPIAVVGGGDSAMEEANFLTKYGSRVYIIHRRNAFRASKIMQARA 239

Query: 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV 310
           L+NPKI V+W+S V+EAYG  D   L G+KVKN+V+G+VSDL+V+GLFFAIGHEPATKF+
Sbjct: 240 LSNPKIQVVWDSEVVEAYGGADGGPLAGVKVKNVVSGEVSDLQVAGLFFAIGHEPATKFL 299

Query: 311 DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
            GQL+L SDGY++TKPG+THTSV GVFAAGDVQDKKYRQA+TAAG+GCMAAL+AEHYLQE
Sbjct: 300 GGQLELDSDGYVVTKPGSTHTSVKGVFAAGDVQDKKYRQAITAAGSGCMAALDAEHYLQE 359

Query: 371 IGSQEDKSE 379
           IG+QEDK++
Sbjct: 360 IGAQEDKTD 368

Possesses thioredoxin-disulfide reductase activity.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6FR39|TRXB_CANGA Thioredoxin reductase OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=TRR1 PE=3 SV=1

 Score =  431 bits (1107), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 201/316 (63%), Positives = 252/316 (79%), Gaps = 6/316 (1%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV IIGSGPAAHTAAIY ARAE+KP ++EG +AN IA GGQLTTT+++ENFPGFP G+ G
Sbjct: 5   KVVIIGSGPAAHTAAIYLARAEIKPTMYEGMLANGIAAGGQLTTTTEIENFPGFPDGMTG 64

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
            +LMDR R QS +FGT+I TET++KVD  SRPFK++T    D + +  D +++ATGA AK
Sbjct: 65  SELMDRMRAQSTKFGTEIITETIAKVDLSSRPFKLWTEFNEDGEPITTDAIVIATGASAK 124

Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
           +L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKVY+I 
Sbjct: 125 RLHIPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYLIV 184

Query: 236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295
           R+D  RAS IMQ RA  N KI++++N+V LEA  +GD K+L  L++KN+ T + +DL V+
Sbjct: 185 RKDHLRASTIMQRRAEQNDKIEILYNTVTLEA--QGDGKLLNNLRIKNVKTNEETDLPVN 242

Query: 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
           GLF+AIGH PATK V+GQ++    GYI T PG++ TSVPGVFAAGDVQD KYRQA+T+AG
Sbjct: 243 GLFYAIGHTPATKIVEGQVETDETGYIKTIPGSSLTSVPGVFAAGDVQDSKYRQAITSAG 302

Query: 356 TGCMAALEAEHYLQEI 371
           +GCMA L+AE YL E+
Sbjct: 303 SGCMAGLDAEKYLTEL 318

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P29509|TRXB1_YEAST Thioredoxin reductase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRR1 PE=1 SV=3

 Score =  429 bits (1104), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/319 (63%), Positives = 251/319 (78%), Gaps = 6/319 (1%)

Query: 57  LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
           +  KV IIGSGPAAHTAAIY ARAE+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G
Sbjct: 2   VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDG 61

Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGA 172
           + G +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ V  D +I+ATGA
Sbjct: 62  LTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA 121

Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
            AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+
Sbjct: 122 SAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVF 181

Query: 233 IIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292
           ++ R+D  RAS IMQ RA  N KI++++N+V LEA G+G  K+L  L++KN    + +DL
Sbjct: 182 MLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDG--KLLNALRIKNTKKNEETDL 239

Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
            VSGLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T
Sbjct: 240 PVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAIT 299

Query: 353 AAGTGCMAALEAEHYLQEI 371
           +AG+GCMAAL+AE YL  +
Sbjct: 300 SAGSGCMAALDAEKYLTSL 318

Acts on thioredoxins 1 and 2.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6HA24|TRXB_KLULA Thioredoxin reductase, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=TRR1 PE=3 SV=1

 Score =  426 bits (1094), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 203/316 (64%), Positives = 249/316 (78%), Gaps = 6/316 (1%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV IIGSGPAAHTAAIY ARAE+KP L+EG+MAN IA GGQLTTT+++ENFPGFP G+ G
Sbjct: 35  KVTIIGSGPAAHTAAIYLARAEIKPTLYEGFMANGIAAGGQLTTTTEIENFPGFPDGLTG 94

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
            +LMDR + QS++FGT + TETVSKVD  SRPFK +T    D +    D +I++TGA AK
Sbjct: 95  SELMDRMKAQSIKFGTDVITETVSKVDLSSRPFKFWTEFNEDQEPETTDAIILSTGASAK 154

Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
           +L  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKVY++ 
Sbjct: 155 RLHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVYMLV 214

Query: 236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295
           R+D  RAS+IMQ RA  N KI++++N V LEA  +GD K L  LKVKN+ T +  DL V+
Sbjct: 215 RKDHLRASQIMQRRAEQNEKIEILYNHVTLEA--KGDGKYLNALKVKNVKTNEEYDLPVN 272

Query: 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
           GLF+AIGH PAT  V GQ+DL   GY+ T PG+T T+VPGVFAAGDVQD +YRQA+T+AG
Sbjct: 273 GLFYAIGHTPATNIVAGQVDLDEAGYVKTVPGSTLTNVPGVFAAGDVQDARYRQAITSAG 332

Query: 356 TGCMAALEAEHYLQEI 371
           +GCMAAL+AE Y+ E+
Sbjct: 333 SGCMAALDAEKYITEL 348

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6C7L4|TRXB_YARLI Thioredoxin reductase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TRR1 PE=3 SV=1

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 197/314 (62%), Positives = 247/314 (78%), Gaps = 6/314 (1%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V IIGSGPAAHTAAIY +RAE+KP L+EG MAN IA GGQLTTT+++ENFPGFP GI+G 
Sbjct: 6   VVIIGSGPAAHTAAIYLSRAEIKPTLYEGMMANGIAAGGQLTTTTEIENFPGFPDGIMGS 65

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKK 176
            LM+  R QS+RFGT+I TETVSKVD   RPFK +T    D +   AD +I+ATGA AK+
Sbjct: 66  QLMEDMRKQSIRFGTEIITETVSKVDLSQRPFKYWTEFNEDEEPHTADAIILATGASAKR 125

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L  PG D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EEA FLTKYGSKVY+I R
Sbjct: 126 LSLPGEDQYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSAAEEALFLTKYGSKVYVIVR 185

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
           +D  RAS +M  R  ++PK+++++N V +EA G+G  K+L  L+++N +TG+  DL+V+G
Sbjct: 186 KDKLRASAVMAKRLASHPKVEILFNHVSIEAKGDG--KLLNALEIENTLTGEKRDLEVNG 243

Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           LF+AIGH PAT  V GQ++   +GY++T PGT +TSV GVFAAGDVQDK+YRQA+T+AGT
Sbjct: 244 LFYAIGHIPATSIVKGQVETDEEGYVVTVPGTANTSVKGVFAAGDVQDKRYRQAITSAGT 303

Query: 357 GCMAALEAEHYLQE 370
           GCMAAL+ E  L E
Sbjct: 304 GCMAALDCEKLLAE 317

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|P38816|TRXB2_YEAST Thioredoxin reductase 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TRR2 PE=1 SV=1

 Score =  417 bits (1072), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 200/318 (62%), Positives = 247/318 (77%), Gaps = 6/318 (1%)

Query: 55  QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP 114
           + +  KV IIGSGPAAHTAAIY ARAE+KP L+EG MAN IA GGQLTTT+D+ENFPGFP
Sbjct: 23  RMIHHKVTIIGSGPAAHTAAIYLARAEMKPTLYEGMMANGIAAGGQLTTTTDIENFPGFP 82

Query: 115 QGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVAT 170
           + + G +LM+R R QS +FGT I TETVSKVD  S+PF+++T    D++ V  D +I+AT
Sbjct: 83  ESLSGSELMERMRKQSAKFGTNIITETVSKVDLSSKPFRLWTEFNEDAEPVTTDAIILAT 142

Query: 171 GAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK 230
           GA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKY SK
Sbjct: 143 GASAKRMHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAEFLTKYASK 202

Query: 231 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVS 290
           VYI+ R+D FRAS IMQ R   NP I V++N+V LEA G+G  K+L  L++KN  +   +
Sbjct: 203 VYILVRKDHFRASVIMQRRIEKNPNIIVLFNTVALEAKGDG--KLLNMLRIKNTKSNVEN 260

Query: 291 DLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQA 350
           DL+V+GLF+AIGH PAT  V GQ+D    GYI T PG++ TSVPG FAAGDVQD +YRQA
Sbjct: 261 DLEVNGLFYAIGHSPATDIVKGQVDEEETGYIKTVPGSSLTSVPGFFAAGDVQDSRYRQA 320

Query: 351 VTAAGTGCMAALEAEHYL 368
           VT+AG+GC+AAL+AE YL
Sbjct: 321 VTSAGSGCIAALDAERYL 338

Acts on mitochondrial thioredoxin 3. Implicated in the defense against oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

>sp|Q6BIS1|TRXB_DEBHA Thioredoxin reductase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=TRR1 PE=3 SV=1

 Score =  416 bits (1069), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 198/314 (63%), Positives = 241/314 (76%), Gaps = 6/314 (1%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V IIGSGPAAHTAAIY +RAE+KP L+EG +AN  A GGQLTTT+DVENFPGFP+GI G 
Sbjct: 6   VTIIGSGPAAHTAAIYLSRAEIKPTLYEGMLANGTAAGGQLTTTTDVENFPGFPKGINGT 65

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKK 176
           +LMD+ R QS+RFGT I TET+SK D  SRPFK++T    DS+ +  D V++ATGA AK+
Sbjct: 66  ELMDQMREQSVRFGTDIITETISKCDLSSRPFKLWTEWNEDSEPITTDAVVIATGASAKR 125

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           +  PG D +W +GISACAVCDGA PIFR+KPLAV+GGGDSA EEA FLTKYGSKVY++ R
Sbjct: 126 MHLPGEDTYWQQGISACAVCDGAVPIFRNKPLAVVGGGDSACEEALFLTKYGSKVYLLVR 185

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
           RD  RAS IMQ R   N K++++WNS   EA G+G  K+L  + V N  T +  DL V+G
Sbjct: 186 RDQLRASNIMQKRVQNNDKLEILWNSEAKEAKGDG--KLLQNISVYNNKTKETKDLPVNG 243

Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           LF+AIGH PAT+    QL+     YI+TKPGT  TS+PGVFAAGDVQDK+YRQA+T+AGT
Sbjct: 244 LFYAIGHIPATQIFAKQLETDDQNYILTKPGTAETSIPGVFAAGDVQDKRYRQAITSAGT 303

Query: 357 GCMAALEAEHYLQE 370
           GCMAAL+ E +L E
Sbjct: 304 GCMAALDCEKFLSE 317

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 1

EC: .

EC: 8

EC: .

EC: 1

EC: .

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
225431669	374	PREDICTED: thioredoxin reductase 2-like	0.947	0.967	0.785	1e-164
255575237	369	disulfide oxidoreductase, putative [Rici	0.947	0.981	0.817	1e-163
452114378	374	NADPH-thioredoxin reductase [Vitis vinif	0.947	0.967	0.777	1e-162
449515145	392	PREDICTED: thioredoxin reductase 2-like	0.858	0.836	0.839	1e-160
79557518	378	NADPH-dependent thioredoxin reductase A	0.856	0.865	0.809	1e-160
12644431	383	RecName: Full=Thioredoxin reductase 2; A	0.856	0.853	0.809	1e-159
110741056	357	putative thioredoxin reductase [Arabidop	0.856	0.915	0.809	1e-159
449456891	392	PREDICTED: thioredoxin reductase 2-like	0.858	0.836	0.836	1e-159
356538417	372	PREDICTED: thioredoxin reductase 2-like	0.861	0.884	0.805	1e-159
297832348	381	thioredoxin reductase [Arabidopsis lyrat	0.856	0.858	0.810	1e-159

>gi|225431669|ref|XP_002263864.1| PREDICTED: thioredoxin reductase 2-like [Vitis vinifera]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 290/369 (78%), Positives = 330/369 (89%), Gaps = 7/369 (1%)

Query: 17  LLTKARTFFGIVTTSSAAAAASFSATTAPKIS--NAMDEIQTLKTKVCIIGSGPAAHTAA 74
            L KAR   G + T+SAAAA+  S+ T+PK+S  +AMD+++TL T++CIIGSGPAAHTAA
Sbjct: 7   FLRKARKLVGFIATTSAAAASL-SSATSPKLSAASAMDDLKTLNTRLCIIGSGPAAHTAA 65

Query: 75  IYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134
           IYA+RA+L+PILFEGWMANDIAPGGQLTTTSDVENFPGFP GI G ++MDRCR QSLRFG
Sbjct: 66  IYASRAQLRPILFEGWMANDIAPGGQLTTTSDVENFPGFPDGINGNEIMDRCRAQSLRFG 125

Query: 135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----AFWNRGI 190
           T+IFTETV++VDF S PFKVFTDSK+VLAD VIVATGAVAK+L FPGS      FWNRGI
Sbjct: 126 TEIFTETVTRVDFSSTPFKVFTDSKTVLADAVIVATGAVAKRLPFPGSGDGPGGFWNRGI 185

Query: 191 SACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA 250
           SACAVCDGAAPIFRDKPLAVIGGGDSAMEEA FLTKYGSKVYIIHRRD+FRASKIMQ RA
Sbjct: 186 SACAVCDGAAPIFRDKPLAVIGGGDSAMEEATFLTKYGSKVYIIHRRDAFRASKIMQQRA 245

Query: 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV 310
           L+NPKI+ IWNSVV+E +G+   ++LGG+KVKN+V+G+VSDLKVSGLFFAIGHEPATKF+
Sbjct: 246 LSNPKIEAIWNSVVVEGHGDEKGRLLGGVKVKNVVSGEVSDLKVSGLFFAIGHEPATKFL 305

Query: 311 DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
           DGQL L SDGY++T+PGTT TSV GVFAAGDVQDKKYRQAVTAAGTGCMAAL+AEHYLQE
Sbjct: 306 DGQLKLDSDGYVVTEPGTTKTSVRGVFAAGDVQDKKYRQAVTAAGTGCMAALDAEHYLQE 365

Query: 371 IGSQEDKSE 379
           IGSQE KS+
Sbjct: 366 IGSQEGKSD 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575237|ref|XP_002528522.1| disulfide oxidoreductase, putative [Ricinus communis] gi|223532024|gb|EEF33834.1| disulfide oxidoreductase, putative [Ricinus communis]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 301/368 (81%), Positives = 333/368 (90%), Gaps = 6/368 (1%)

Query: 13  KLRSLLTKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEI-QTLKTKVCIIGSGPAAH 71
           +LR+L  +AR+F G+ TTS+AAAA S  +T  P  +N+  ++ + L+T+VCI+GSGPAAH
Sbjct: 7   RLRNLFQRARSFIGLATTSAAAAALSTVST--PAAANSTPKLMEELRTRVCIVGSGPAAH 64

Query: 72  TAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSL 131
           TAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP GI GG+ MDRCR QS 
Sbjct: 65  TAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPDGIQGGEFMDRCRAQSS 124

Query: 132 RFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGIS 191
           RFGTQI+TETV+KVDF S PFK+ TDSKSVLADTVIVATGAVAK+L F GSD FWNRGIS
Sbjct: 125 RFGTQIYTETVNKVDFSSVPFKILTDSKSVLADTVIVATGAVAKRLNFAGSDTFWNRGIS 184

Query: 192 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL 251
           ACAVCDGAAPIFRDKPLAVIGGGDSAMEEA FLTKYGSKVYIIHRRDSFRASKIMQNRAL
Sbjct: 185 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEATFLTKYGSKVYIIHRRDSFRASKIMQNRAL 244

Query: 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311
           TNPKI+VIWNSVV+EA GE   ++LGGLKVKN+V+G+VSDLKVSGLFFAIGHEPATKF+D
Sbjct: 245 TNPKIEVIWNSVVVEANGE---RLLGGLKVKNVVSGEVSDLKVSGLFFAIGHEPATKFLD 301

Query: 312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371
           GQL+L SDGY+ITKPGTT TSV GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI
Sbjct: 302 GQLELDSDGYVITKPGTTQTSVRGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 361

Query: 372 GSQEDKSE 379
           G+QE KS+
Sbjct: 362 GAQEGKSD 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|452114378|gb|AGG09346.1| NADPH-thioredoxin reductase [Vitis vinifera]

 Score =  576 bits (1484), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 287/369 (77%), Positives = 328/369 (88%), Gaps = 7/369 (1%)

Query: 17  LLTKARTFFGIVTTSSAAAAASFSATTAPKIS--NAMDEIQTLKTKVCIIGSGPAAHTAA 74
            L KAR   G + T+SAAAA+  S+ T+PK+S  +AMD+++TL T++CII SGPAAHTAA
Sbjct: 7   FLRKARKLVGFIATTSAAAASL-SSATSPKLSAASAMDDLKTLNTRLCIISSGPAAHTAA 65

Query: 75  IYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG 134
           IYA+RA+L+PILFEGWMANDIAPGGQLTTTSDVENFPGFP GI G ++MDRCR QSLRFG
Sbjct: 66  IYASRAQLRPILFEGWMANDIAPGGQLTTTSDVENFPGFPDGINGNEIMDRCRAQSLRFG 125

Query: 135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----AFWNRGI 190
           T+IFTETV++VDF S PFKVFTDSK+VLAD VIVATGAVAK+L FPGS      FWNRGI
Sbjct: 126 TEIFTETVTRVDFSSTPFKVFTDSKTVLADAVIVATGAVAKRLPFPGSGDGPGGFWNRGI 185

Query: 191 SACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA 250
           SACAVCDGAAPIFRDKPLAVIGGGDSAMEEA FLTKYGSKVYIIHRRD+FRASKIMQ RA
Sbjct: 186 SACAVCDGAAPIFRDKPLAVIGGGDSAMEEATFLTKYGSKVYIIHRRDAFRASKIMQQRA 245

Query: 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV 310
           L+NPKI+ IWNSVV++ +G+   ++LGG+KVKN+V+G+VSDLKVSGLFFAIGHEPATKF+
Sbjct: 246 LSNPKIEAIWNSVVVDGHGDEKGRLLGGVKVKNVVSGEVSDLKVSGLFFAIGHEPATKFL 305

Query: 311 DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
           DGQL L SDGY++T+PGTT TSV GVFAAGDVQDKKY QAVTAAGTGCMAAL+AEHYLQE
Sbjct: 306 DGQLKLDSDGYVVTEPGTTKTSVRGVFAAGDVQDKKYTQAVTAAGTGCMAALDAEHYLQE 365

Query: 371 IGSQEDKSE 379
           IGSQE KS+
Sbjct: 366 IGSQEGKSD 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449515145|ref|XP_004164610.1| PREDICTED: thioredoxin reductase 2-like [Cucumis sativus]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 278/331 (83%), Positives = 309/331 (93%), Gaps = 3/331 (0%)

Query: 52  DEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFP 111
           D  +TLKTKVC+IGSGPAAHTAAIYAARAELKPILFEGWMAN+IAPGGQLTTT+DVENFP
Sbjct: 62  DATETLKTKVCVIGSGPAAHTAAIYAARAELKPILFEGWMANNIAPGGQLTTTTDVENFP 121

Query: 112 GFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATG 171
           GFP+GILG +LMD CRNQSLRFGTQI+TETV+KVDF S+PFKVF DSK+VLAD+VIVATG
Sbjct: 122 GFPEGILGIELMDHCRNQSLRFGTQIYTETVTKVDFSSKPFKVFADSKTVLADSVIVATG 181

Query: 172 AVAKKLQFPGS---DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           AVAK+L FPGS   + FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYG
Sbjct: 182 AVAKRLTFPGSGEGNGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYG 241

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ R  +NPKI+VIWNSVV EAYG+ + +VLGGLKV +L++G+
Sbjct: 242 SKVYIIHRRDTFRASKIMQQRVSSNPKIEVIWNSVVKEAYGDANGRVLGGLKVHDLISGK 301

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDL VSGLFFAIGHEPATKF+DGQL L SDGY++TKPGTTHTS+PGVFAAGDVQDKKYR
Sbjct: 302 VSDLAVSGLFFAIGHEPATKFLDGQLQLDSDGYVLTKPGTTHTSIPGVFAAGDVQDKKYR 361

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 362 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79557518|ref|NP_179334.4| NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana] gi|330251529|gb|AEC06623.1| NADPH-dependent thioredoxin reductase A [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 305/331 (92%), Gaps = 4/331 (1%)

Query: 53  EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG 112
           +++T KTKVCI+GSGPAAHTAAIYA+RAELKP+LFEGWMANDIAPGGQLTTT+DVENFPG
Sbjct: 48  DMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 107

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           FP+GILG D++++ R QS RFGT IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGA
Sbjct: 108 FPEGILGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGA 167

Query: 173 VAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           VAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYG
Sbjct: 168 VAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYG 227

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+ + +VLGGLKVKN+VTG 
Sbjct: 228 SKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGD 287

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYR
Sbjct: 288 VSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYR 347

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 348 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 378

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12644431|sp|Q39242.2|TRXB2_ARATH RecName: Full=Thioredoxin reductase 2; AltName: Full=NADPH-dependent thioredoxin reductase 2; Short=NTR2; AltName: Full=NADPH-dependent thioredoxin reductase A; Short=AtNTRA

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 305/331 (92%), Gaps = 4/331 (1%)

Query: 53  EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG 112
           +++T KTKVCI+GSGPAAHTAAIYA+RAELKP+LFEGWMANDIAPGGQLTTT+DVENFPG
Sbjct: 53  DMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 112

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           FP+GILG D++++ R QS RFGT IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGA
Sbjct: 113 FPEGILGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGA 172

Query: 173 VAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           VAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYG
Sbjct: 173 VAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYG 232

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+ + +VLGGLKVKN+VTG 
Sbjct: 233 SKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGD 292

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYR
Sbjct: 293 VSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYR 352

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 353 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 383

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110741056|dbj|BAE98622.1| putative thioredoxin reductase [Arabidopsis thaliana]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 268/331 (80%), Positives = 305/331 (92%), Gaps = 4/331 (1%)

Query: 53  EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG 112
           +++T KTKVCI+GSGPAAHTAAIYA+RAELKP+LFEGWMANDIAPGGQLTTT+DVENFPG
Sbjct: 27  DMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 86

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           FP+GILG D++++ R QS RFGT IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGA
Sbjct: 87  FPEGILGIDIVEKFRKQSERFGTTIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGA 146

Query: 173 VAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           VAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYG
Sbjct: 147 VAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYG 206

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+ + +VLGGLKVKN+VTG 
Sbjct: 207 SKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDENGRVLGGLKVKNVVTGD 266

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKYR
Sbjct: 267 VSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKYR 326

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 327 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 357

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456891|ref|XP_004146182.1| PREDICTED: thioredoxin reductase 2-like [Cucumis sativus]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/331 (83%), Positives = 308/331 (93%), Gaps = 3/331 (0%)

Query: 52  DEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFP 111
           D  +TLKTKVC+IGSGPAAHTAAIYAARAELKPILFEGWMAN+IAPGGQLTTT+DVENFP
Sbjct: 62  DATETLKTKVCVIGSGPAAHTAAIYAARAELKPILFEGWMANNIAPGGQLTTTTDVENFP 121

Query: 112 GFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATG 171
           GFP+GILG +LMD CRNQSLRFGTQI+TETV+KVDF S+PFKVF DSK+VLAD+VIVATG
Sbjct: 122 GFPEGILGIELMDHCRNQSLRFGTQIYTETVTKVDFSSKPFKVFADSKTVLADSVIVATG 181

Query: 172 AVAKKLQFPGS---DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           AVAK+L FPGS   + FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYG
Sbjct: 182 AVAKRLTFPGSGEGNGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYG 241

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
           SKVYIIHRRD+FRASKIMQ R  +NPKI+VIWNSVV EAY + + +VLGGLKV +L++G+
Sbjct: 242 SKVYIIHRRDTFRASKIMQQRVSSNPKIEVIWNSVVKEAYSDANGRVLGGLKVHDLISGK 301

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           VSDL VSGLFFAIGHEPATKF+DGQL L SDGY++TKPGTTHTS+PGVFAAGDVQDKKYR
Sbjct: 302 VSDLAVSGLFFAIGHEPATKFLDGQLQLDSDGYVLTKPGTTHTSIPGVFAAGDVQDKKYR 361

Query: 349 QAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           QA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 362 QAITAAGTGCMAALDAEHYLQEIGSQEGKSD 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538417|ref|XP_003537700.1| PREDICTED: thioredoxin reductase 2-like [Glycine max]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/334 (80%), Positives = 308/334 (92%), Gaps = 5/334 (1%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           M ++Q  KTK+CIIGSGP+AHTAA+YAARAELKPILFEGWMANDIAPGGQLTTT+DVENF
Sbjct: 39  MGDVQIHKTKLCIIGSGPSAHTAAVYAARAELKPILFEGWMANDIAPGGQLTTTTDVENF 98

Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVAT 170
           PGFP GILGG+LM+RCR+QSLRFGT+I TETVSKVDF +RPF+VFTDS++V A++VIVAT
Sbjct: 99  PGFPDGILGGELMERCRSQSLRFGTEIHTETVSKVDFSNRPFRVFTDSRTVEAESVIVAT 158

Query: 171 GAVAKKLQFPGS----DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           GAVAK+L FPGS    + +WNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEA FLTK
Sbjct: 159 GAVAKRLPFPGSGDGPEGYWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEATFLTK 218

Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGD-KKVLGGLKVKNLV 285
           YGS+VYIIHRRD+FRASKIMQ++ + N KI VIWNSVV+EA+G GD K+VLGGLKVKN+V
Sbjct: 219 YGSEVYIIHRRDTFRASKIMQSKVMNNSKIKVIWNSVVVEAFGGGDNKRVLGGLKVKNVV 278

Query: 286 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
           T +VS+LKVSGLFFAIGHEPATKF+DGQL+L SDGYI+TKPGTT TSV GVFAAGDVQDK
Sbjct: 279 TQEVSELKVSGLFFAIGHEPATKFLDGQLELDSDGYIVTKPGTTKTSVEGVFAAGDVQDK 338

Query: 346 KYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           KYRQA+TAAGTGCMAAL+AEHYLQ +G Q+DKS+
Sbjct: 339 KYRQAITAAGTGCMAALDAEHYLQNVGLQQDKSD 372

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832348|ref|XP_002884056.1| thioredoxin reductase [Arabidopsis lyrata subsp. lyrata] gi|297329896|gb|EFH60315.1| thioredoxin reductase [Arabidopsis lyrata subsp. lyrata]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 269/332 (81%), Positives = 306/332 (92%), Gaps = 5/332 (1%)

Query: 53  EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG 112
           E++T KTKVCI+GSGPAAHTAAIYA+RAELKP+LFEGWMANDIAPGGQLTTT+DVENFPG
Sbjct: 50  EMETHKTKVCIVGSGPAAHTAAIYASRAELKPLLFEGWMANDIAPGGQLTTTTDVENFPG 109

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           FP+GILG +++++ R QS RFGT+IFTETV+KVDF S+PFK+FTDS++VLAD+VI++TGA
Sbjct: 110 FPEGILGAEIVEKFRKQSERFGTKIFTETVNKVDFSSKPFKLFTDSRTVLADSVIISTGA 169

Query: 173 VAKKLQFPGS----DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
           VAK+L F GS      FWNRGISACAVCDGAAPIFR+KPL VIGGGDSAMEEANFLTKYG
Sbjct: 170 VAKRLSFTGSGEGNGGFWNRGISACAVCDGAAPIFRNKPLVVIGGGDSAMEEANFLTKYG 229

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGD-KKVLGGLKVKNLVTG 287
           SKVYIIHRRD+FRASKIMQ RAL+NPKI+VIWNS V+EAYG+ + K VLGGLKVKN+VTG
Sbjct: 230 SKVYIIHRRDTFRASKIMQQRALSNPKIEVIWNSAVVEAYGDDNGKGVLGGLKVKNVVTG 289

Query: 288 QVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY 347
            VSDLKVSGLFFAIGHEPATKF+DGQL+L  DGY++TKPGTT TSV GVFAAGDVQDKKY
Sbjct: 290 VVSDLKVSGLFFAIGHEPATKFLDGQLELDEDGYVVTKPGTTKTSVVGVFAAGDVQDKKY 349

Query: 348 RQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           RQA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 350 RQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 381

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	382
TAIR|locus:2117612	375	NTRB "NADPH-dependent thioredo	0.968	0.986	0.682	6.9e-134
SGD|S000002761	319	TRR1 "Cytoplasmic thioredoxin	0.811	0.971	0.591	1.8e-96
ASPGD|ASPL0000009801	339	trxR [Emericella nidulans (tax	0.832	0.938	0.567	3e-94
POMBASE|SPBC3F6.03	322	trr1 "thioredoxin reductase Tr	0.811	0.962	0.585	3.4e-93
SGD|S000001148	342	TRR2 "Mitochondrial thioredoxi	0.803	0.897	0.584	3.4e-93
CGD|CAL0000375	320	TRR1 [Candida albicans (taxid:	0.808	0.965	0.577	5.5e-93
UNIPROTKB|Q5AG89	320	TRR1 "Thioredoxin reductase" [	0.808	0.965	0.577	5.5e-93
DICTYBASE|DDB_G0280815	319	trrA "thioredoxin reductase" [	0.808	0.968	0.507	1e-84
UNIPROTKB|Q70G58	515	LOC_Os07g46410 "Thioredoxin re	0.795	0.590	0.5	1.4e-80
TAIR|locus:2062683	529	NTRC "NADPH-dependent thioredo	0.801	0.578	0.477	3.6e-80

TAIR|locus:2117612 NTRB "NADPH-dependent thioredoxin reductase B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1312 (466.9 bits), Expect = 6.9e-134, P = 6.9e-134
 Identities = 256/375 (68%), Positives = 294/375 (78%)

Query:     9 NTTLKLRSLLTKARTFFGIVXXXXXXXXXXXXXXXXPKISNAMDEIQTLKTKVCIIGSGP 68
             N   +L+ L++KAR+F  +                    S  M+ ++T  T++CI+GSGP
Sbjct:     2 NCVSRLKCLISKARSFARLGGESTLSQPPSLASAAFSS-SAVMNGLETHNTRLCIVGSGP 60

Query:    69 XXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRN 128
                         ELKP+LFEGWMANDIAPGGQLTTT+DVENFPGFP+GILG +L D+ R 
Sbjct:    61 AAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRK 120

Query:   129 QSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD----A 184
             QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+ATGAVAK+L F GS      
Sbjct:   121 QSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILATGAVAKRLSFVGSGEASGG 180

Query:   185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK 244
             FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD+FRASK
Sbjct:   181 FWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASK 240

Query:   245 IMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHE 304
             IMQ RAL+NPKIDVIWNS V+EAYG+               TG VSDLKVSGLFFAIGHE
Sbjct:   241 IMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHE 300

Query:   305 PATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA 364
             PATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKKYRQA+TAAGTGCMAAL+A
Sbjct:   301 PATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDA 360

Query:   365 EHYLQEIGSQEDKSE 379
             EHYLQEIGSQ+ KS+
Sbjct:   361 EHYLQEIGSQQGKSD 375

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;ISS;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009846 "pollen germination" evidence=IGI

GO:0016049 "cell growth" evidence=IGI

GO:0042964 "thioredoxin biosynthetic process" evidence=IGI

GO:0045454 "cell redox homeostasis" evidence=IGI

GO:0048316 "seed development" evidence=IGI

SGD|S000002761 TRR1 "Cytoplasmic thioredoxin reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 959 (342.6 bits), Expect = 1.8e-96, P = 1.8e-96
 Identities = 187/316 (59%), Positives = 230/316 (72%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP            E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G+ G
Sbjct:     5 KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTG 64

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
              +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ V  D +I+ATGA AK
Sbjct:    65 SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 124

Query:   176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
             ++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+++ 
Sbjct:   125 RMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLV 184

Query:   236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
             R+D  RAS IMQ RA  N KI++++N+V LEA G+                 + +DL VS
Sbjct:   185 RKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDLPVS 242

Query:   296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
             GLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG
Sbjct:   243 GLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAG 302

Query:   356 TGCMAALEAEHYLQEI 371
             +GCMAAL+AE YL  +
Sbjct:   303 SGCMAALDAEKYLTSL 318

GO:0045454 "cell redox homeostasis" evidence=IMP;IDA;TAS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;IDA

GO:0005829 "cytosol" evidence=IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0005758 "mitochondrial intermembrane space" evidence=IDA

GO:0034599 "cellular response to oxidative stress" evidence=IGI

GO:0008198 "ferrous iron binding" evidence=IDA

ASPGD|ASPL0000009801 trxR [Emericella nidulans (taxid:162425)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 185/326 (56%), Positives = 228/326 (69%)

Query:    59 TKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGIL 118
             +KV IIGSGP            ELKP+L+EG +AN  A GGQLTTT+DVENFPGFP GI 
Sbjct:     4 SKVVIIGSGPAAHTAAIYLSRAELKPVLYEGMLANGTAAGGQLTTTTDVENFPGFPDGIG 63

Query:   119 GGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT------DSKSV-LADTVIVATG 171
             G +LMD  R QS+RFGT++ TET+S+VD   RPFK++T      D++    AD VI+ATG
Sbjct:    64 GSELMDAMRKQSIRFGTEVITETISRVDLSQRPFKLWTEWNDGPDNEPARTADAVIIATG 123

Query:   172 AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKV 231
             A A++L  PG D +W  GISACAVCDGA PIFR+KPL VIGGGDSA EEA FLTKYGS V
Sbjct:   124 ANARRLNLPGEDVYWQNGISACAVCDGAVPIFRNKPLFVIGGGDSAAEEAIFLTKYGSSV 183

Query:   232 YIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXX-TGQVS 290
              ++ RRD  RASK M +R L NPK+ V +N+V  E  GE                TG+  
Sbjct:   184 TVLVRRDKLRASKAMASRLLANPKVTVRFNTVATEVLGEKKLNGLMTHLRVKNVLTGEEE 243

Query:   291 DLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQA 350
              L+ +GLF+A+GH+PAT  V GQ++L  DGYI TKPGT+ TSV GVFA GDVQDK+YRQA
Sbjct:   244 TLEANGLFYAVGHDPATALVKGQVELDEDGYIATKPGTSFTSVEGVFACGDVQDKRYRQA 303

Query:   351 VTAAGTGCMAALEAEHYLQEIGSQED 376
             +T+AG+GC+AALEAE ++ E  S E+
Sbjct:   304 ITSAGSGCIAALEAERFIGESESNEE 329

GO:0005622 "intracellular" evidence=IDA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=RCA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA;RCA

GO:0034599 "cellular response to oxidative stress" evidence=IEP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0071313 "cellular response to caffeine" evidence=IEA

POMBASE|SPBC3F6.03 trr1 "thioredoxin reductase Trr1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 185/316 (58%), Positives = 223/316 (70%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP            ELKP+++EG +AN IA GGQLTTT+DVENFPGFP GI G
Sbjct:     5 KVVIIGSGPAGHTAAIYLARGELKPVMYEGMLANGIAAGGQLTTTTDVENFPGFPDGING 64

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSV----LADTVIVATGAVAK 175
               L +  R QSLRFGT+I TETVSK+D  SRPFK + +         AD+VI+ATGA A+
Sbjct:    65 TTLTENFRAQSLRFGTEIITETVSKLDLSSRPFKYWLEGAEEEEPHTADSVILATGASAR 124

Query:   176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
             +L   G D +W  GISACAVCDGA PI+R+KPLAV+GGGDSA EEA FLTKYGSKVY++ 
Sbjct:   125 RLHITGEDTYWQAGISACAVCDGAVPIYRNKPLAVVGGGDSAAEEAQFLTKYGSKVYVLV 184

Query:   236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
             RRD  RAS IM  R L NPK++V+WN+V  EA G+               T +VSDL+V+
Sbjct:   185 RRDKLRASPIMAKRLLANPKVEVLWNTVAEEAQGDGKLLNNLRIKNTN--TNEVSDLQVN 242

Query:   296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
             GLF+AIGH PATK V  Q++L   GYI T  GT  TS+PG FAAGDVQDK +RQA+T+AG
Sbjct:   243 GLFYAIGHIPATKLVAEQIELDEAGYIKTINGTPRTSIPGFFAAGDVQDKVFRQAITSAG 302

Query:   356 TGCMAALEAEHYLQEI 371
             +GC AAL A HYL+E+
Sbjct:   303 SGCQAALLAMHYLEEL 318

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0019430 "removal of superoxide radicals" evidence=ISS

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0071313 "cellular response to caffeine" evidence=IMP

SGD|S000001148 TRR2 "Mitochondrial thioredoxin reductase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 183/313 (58%), Positives = 224/313 (71%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP            E+KP L+EG MAN IA GGQLTTT+D+ENFPGFP+ + G
Sbjct:    28 KVTIIGSGPAAHTAAIYLARAEMKPTLYEGMMANGIAAGGQLTTTTDIENFPGFPESLSG 87

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
              +LM+R R QS +FGT I TETVSKVD  S+PF+++T    D++ V  D +I+ATGA AK
Sbjct:    88 SELMERMRKQSAKFGTNIITETVSKVDLSSKPFRLWTEFNEDAEPVTTDAIILATGASAK 147

Query:   176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
             ++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKY SKVYI+ 
Sbjct:   148 RMHLPGEETYWQQGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAEFLTKYASKVYILV 207

Query:   236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
             R+D FRAS IMQ R   NP I V++N+V LEA G+                   +DL+V+
Sbjct:   208 RKDHFRASVIMQRRIEKNPNIIVLFNTVALEAKGDGKLLNMLRIKNTKSNVE--NDLEVN 265

Query:   296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
             GLF+AIGH PAT  V GQ+D    GYI T PG++ TSVPG FAAGDVQD +YRQAVT+AG
Sbjct:   266 GLFYAIGHSPATDIVKGQVDEEETGYIKTVPGSSLTSVPGFFAAGDVQDSRYRQAVTSAG 325

Query:   356 TGCMAALEAEHYL 368
             +GC+AAL+AE YL
Sbjct:   326 SGCIAALDAERYL 338

GO:0045454 "cell redox homeostasis" evidence=IC

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;IDA

GO:0034599 "cellular response to oxidative stress" evidence=IMP

CGD|CAL0000375 TRR1 [Candida albicans (taxid:5476)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 182/315 (57%), Positives = 221/315 (70%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP            E+KP L+EG +AN IA GGQLTTT+D+ENFPGFP GI G
Sbjct:     5 KVTIIGSGPAAHTAAIYLARAEIKPTLYEGMLANGIAAGGQLTTTTDIENFPGFPNGIGG 64

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
              +LM++ + QS RFGT+I TET+SKVDF  RPFK++T    D++ +  D VI+ATGA AK
Sbjct:    65 SELMEKMKEQSQRFGTEIITETISKVDFSKRPFKLWTEWNEDAEPITTDAVIIATGASAK 124

Query:   176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
             ++  PG D +W +GISACAVCDGA PIFR+ PLAVIGGGDSA EEA FLTKY SKV+++ 
Sbjct:   125 RMHLPGEDTYWQQGISACAVCDGAVPIFRNNPLAVIGGGDSACEEAIFLTKYASKVFLLV 184

Query:   236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
             RRD  RAS IMQ R   N KI+V+WN+  LEA G+               T +  DL+V+
Sbjct:   185 RRDVLRASTIMQKRVTNNEKIEVLWNTEALEAKGDGKLLKSLRIVNNK--TKEEKDLQVN 242

Query:   296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
             GLF+AIGH PATK    QL     GYI T PGT  TS+ GVFAAGDVQDK YRQA+T+AG
Sbjct:   243 GLFYAIGHIPATKIFADQLKTDEAGYIQTTPGTASTSIEGVFAAGDVQDKIYRQAITSAG 302

Query:   356 TGCMAALEAEHYLQE 370
             +GCMAALE E ++ E
Sbjct:   303 SGCMAALECEKFISE 317

GO:0008198 "ferrous iron binding" evidence=IGI

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IGI

GO:0045454 "cell redox homeostasis" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IEP;IGI

GO:0005829 "cytosol" evidence=IGI

GO:0005634 "nucleus" evidence=IEA

GO:0071313 "cellular response to caffeine" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|Q5AG89 TRR1 "Thioredoxin reductase" [Candida albicans SC5314 (taxid:237561)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 182/315 (57%), Positives = 221/315 (70%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP            E+KP L+EG +AN IA GGQLTTT+D+ENFPGFP GI G
Sbjct:     5 KVTIIGSGPAAHTAAIYLARAEIKPTLYEGMLANGIAAGGQLTTTTDIENFPGFPNGIGG 64

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
              +LM++ + QS RFGT+I TET+SKVDF  RPFK++T    D++ +  D VI+ATGA AK
Sbjct:    65 SELMEKMKEQSQRFGTEIITETISKVDFSKRPFKLWTEWNEDAEPITTDAVIIATGASAK 124

Query:   176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
             ++  PG D +W +GISACAVCDGA PIFR+ PLAVIGGGDSA EEA FLTKY SKV+++ 
Sbjct:   125 RMHLPGEDTYWQQGISACAVCDGAVPIFRNNPLAVIGGGDSACEEAIFLTKYASKVFLLV 184

Query:   236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
             RRD  RAS IMQ R   N KI+V+WN+  LEA G+               T +  DL+V+
Sbjct:   185 RRDVLRASTIMQKRVTNNEKIEVLWNTEALEAKGDGKLLKSLRIVNNK--TKEEKDLQVN 242

Query:   296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
             GLF+AIGH PATK    QL     GYI T PGT  TS+ GVFAAGDVQDK YRQA+T+AG
Sbjct:   243 GLFYAIGHIPATKIFADQLKTDEAGYIQTTPGTASTSIEGVFAAGDVQDKIYRQAITSAG 302

Query:   356 TGCMAALEAEHYLQE 370
             +GCMAALE E ++ E
Sbjct:   303 SGCMAALECEKFISE 317

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IGI

GO:0005829 "cytosol" evidence=IGI

GO:0008198 "ferrous iron binding" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IGI;IEP

GO:0045454 "cell redox homeostasis" evidence=IGI

DICTYBASE|DDB_G0280815 trrA "thioredoxin reductase" [Dictyostelium discoideum (taxid:44689)]

 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 160/315 (50%), Positives = 217/315 (68%)

Query:    60 KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
             KV IIGSGP             L+P++FEG+MA  +A GGQLTTT+++ENFPGFP  I G
Sbjct:     8 KVVIIGSGPAGHTAGIYAGRARLEPLMFEGFMAGGVAAGGQLTTTTEIENFPGFPIDISG 67

Query:   120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK 176
              +LMD+ R Q+++ GT I T+T+SKVD K RPF ++ +    K + A ++I+ATGA AK+
Sbjct:    68 SELMDKMREQNIKCGTTIETKTISKVDLKQRPFTIYVEDEEDKPIKAQSIIIATGATAKR 127

Query:   177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
             +  PG   FW++G+SACAVCDGA PI+R+K L V+GGGD+A EEA FLT + SKV ++ R
Sbjct:   128 MGVPGETEFWSKGVSACAVCDGALPIYRNKHLVVVGGGDTAAEEATFLTHFASKVTLLVR 187

Query:   237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
             R+  RASK MQ +  +NPKI+V+W++ ++E  GE               +   S+L   G
Sbjct:   188 RNVMRASKAMQQKVFSNPKIEVLWDTTLVEIKGEKSVTSVGIYNSETKVS---SNLDAQG 244

Query:   297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
             LF+AIGH P + F++GQL+    GYIIT+PG+T T+V GVFA GDVQDK YRQA+TAAG 
Sbjct:   245 LFYAIGHTPNSAFLNGQLNTDETGYIITQPGSTKTNVEGVFACGDVQDKVYRQAITAAGN 304

Query:   357 GCMAALEAEHYLQEI 371
             GCMAAL+ E +L  +
Sbjct:   305 GCMAALDCERFLSSL 319

GO:0045454 "cell redox homeostasis" evidence=ISS;IDA

GO:0031154 "culmination involved in sorocarp development" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q70G58 LOC_Os07g46410 "Thioredoxin reductase NTRC" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 791 (283.5 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
 Identities = 153/306 (50%), Positives = 204/306 (66%)

Query:    63 IIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDL 122
             IIGSGP             LKP++FEG+    + PGGQL TT++VENFPGFP G+ G DL
Sbjct:    74 IIGSGPAGYTAAIYAARANLKPVVFEGYQVGGV-PGGQLMTTTEVENFPGFPDGVTGPDL 132

Query:   123 MDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS 182
             MD+ R Q+ R+G ++  E V  V+ KSRPF + +  + V   +VI+ATGA AK+L+ P  
Sbjct:   133 MDKMRKQAERWGAELHQEDVEFVNVKSRPFVIRSSDREVKCHSVIIATGAAAKRLRLPRE 192

Query:   183 DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA 242
             D FW+RGISACA+CDGA+P+F+ + LAV+GGGD+A EEA +LTKY   V+++ R+D  RA
Sbjct:   193 DEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEAIYLTKYARHVHLLVRKDQLRA 252

Query:   243 SKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIG 302
             SK MQ+R L NP I V +N+  ++                   TG+ S L+V GLF+ IG
Sbjct:   253 SKAMQDRVLNNPNITVHFNTEAVDVVSNPKGQMSGIQLKRTD-TGEESVLEVKGLFYGIG 311

Query:   303 HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362
             H P ++ + GQ+DL   GYI+ + GT  TSV GVFAAGDVQD ++RQAVTAAG+GC+AAL
Sbjct:   312 HTPNSQLLQGQIDLDDAGYILVEEGTAKTSVDGVFAAGDVQDHEWRQAVTAAGSGCVAAL 371

Query:   363 EAEHYL 368
               E YL
Sbjct:   372 SVERYL 377

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009507 "chloroplast" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

TAIR|locus:2062683 NTRC "NADPH-dependent thioredoxin reductase C" [Arabidopsis thaliana (taxid:3702)]

 Score = 784 (281.0 bits), Expect = 3.6e-80, Sum P(2) = 3.6e-80
 Identities = 147/308 (47%), Positives = 207/308 (67%)

Query:    61 VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
             V IIGSGP             LKP++FEG+    + PGGQL TT++VENFPGFP GI G 
Sbjct:    86 VVIIGSGPAGYTAAIYAARANLKPVVFEGYQMGGV-PGGQLMTTTEVENFPGFPDGITGP 144

Query:   121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP 180
             DLM++ R Q+ R+G +++ E V  +   + PF V T  + V   ++I ATGA A++L+ P
Sbjct:   145 DLMEKMRKQAERWGAELYPEDVESLSVTTAPFTVQTSERKVKCHSIIYATGATARRLRLP 204

Query:   181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
               + FW+RGISACA+CDGA+P+F+ + LAV+GGGD+A EEA +LTKY   V+++ RRD  
Sbjct:   205 REEEFWSRGISACAICDGASPLFKGQVLAVVGGGDTATEEALYLTKYARHVHLLVRRDQL 264

Query:   241 RASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFA 300
             RASK MQ+R + NP I V +N+  ++                   TG+ ++L+  GLF+ 
Sbjct:   265 RASKAMQDRVINNPNITVHYNTETVDVLSNTKGQMSGILLRRLD-TGEETELEAKGLFYG 323

Query:   301 IGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMA 360
             IGH P ++ ++GQ++L S GY++ + GT++TSV GVFAAGDVQD ++RQAVTAAG+GC+A
Sbjct:   324 IGHSPNSQLLEGQVELDSSGYVLVREGTSNTSVEGVFAAGDVQDHEWRQAVTAAGSGCIA 383

Query:   361 ALEAEHYL 368
             AL AE YL
Sbjct:   384 ALSAERYL 391

GO:0004791 "thioredoxin-disulfide reductase activity" evidence=IEA;ISS;IMP;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA;IDA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0008047 "enzyme activator activity" evidence=IDA

GO:0016671 "oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor" evidence=IDA

GO:0043085 "positive regulation of catalytic activity" evidence=IDA

GO:0042744 "hydrogen peroxide catabolic process" evidence=RCA;IMP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0010581 "regulation of starch biosynthetic process" evidence=IMP

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P52215	TRXB_STRCO	1, ., 8, ., 1, ., 9	0.5186	0.8089	0.9596	yes	no
Q6FR39	TRXB_CANGA	1, ., 8, ., 1, ., 9	0.6360	0.8115	0.9717	yes	no
Q39243	TRXB1_ARATH	1, ., 8, ., 1, ., 9	0.752	0.9685	0.9866	no	no
Q39242	TRXB2_ARATH	1, ., 8, ., 1, ., 9	0.8096	0.8560	0.8537	yes	no
Q6ZFU6	NTRB_ORYSJ	1, ., 8, ., 1, ., 9	0.7832	0.8455	0.9758	yes	no
Q1RJD8	TRXB_RICBR	1, ., 8, ., 1, ., 9	0.5301	0.8036	0.9903	yes	no
Q9ZD97	TRXB_RICPR	1, ., 8, ., 1, ., 9	0.4888	0.8036	0.9903	yes	no
Q9PKT7	TRXB_CHLMU	1, ., 8, ., 1, ., 9	0.5495	0.8010	0.9807	yes	no
P43496	TRXB_PENCH	1, ., 8, ., 1, ., 9	0.5701	0.8376	0.9580	yes	no
Q6HA24	TRXB_KLULA	1, ., 8, ., 1, ., 9	0.6424	0.8115	0.8882	yes	no
Q54UU8	TRXB_DICDI	1, ., 8, ., 1, ., 9	0.5460	0.8089	0.9686	yes	no
Q4ULP1	TRXB_RICFE	1, ., 8, ., 1, ., 9	0.5365	0.8036	0.9903	yes	no
Q92I02	TRXB_RICCN	1, ., 8, ., 1, ., 9	0.5396	0.8036	0.9903	yes	no
Q68WT3	TRXB_RICTY	1, ., 8, ., 1, ., 9	0.4984	0.8036	0.9903	yes	no
Q69PS6	NTRA_ORYSJ	1, ., 8, ., 1, ., 9	0.7317	0.9450	0.9809	no	no
Q9Z8M4	TRXB_CHLPN	1, ., 8, ., 1, ., 9	0.5382	0.8036	0.9871	yes	no
P51978	TRXB_NEUCR	1, ., 8, ., 1, ., 9	0.6151	0.8193	0.9371	N/A	no
Q92375	TRXB_SCHPO	1, ., 8, ., 1, ., 9	0.6329	0.8115	0.9627	yes	no
P29509	TRXB1_YEAST	1, ., 8, ., 1, ., 9	0.6394	0.8193	0.9811	yes	no
Q75CM8	TRXB_ASHGO	1, ., 8, ., 1, ., 9	0.6170	0.8115	0.9717	yes	no
P52214	TRXB_MYCTU	1, ., 8, ., 1, ., 9	0.5	0.8219	0.9373	yes	no
Q6C7L4	TRXB_YARLI	1, ., 8, ., 1, ., 9	0.6273	0.8062	0.9655	yes	no
Q6BIS1	TRXB_DEBHA	1, ., 8, ., 1, ., 9	0.6305	0.8062	0.9595	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	1.8.1.9	0.979
3rd Layer	1.8.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00006001001	RecName- Full=Thioredoxin reductase; EC=1.8.1.9; (333 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00021525001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (273 aa)	•				•	•	•		0.908
	GSVIVG00017304001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (463 aa)						•	•		0.907
	GSVIVG00000520001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (438 aa)						•	•		0.902
	GSVIVG00028970001	SubName- Full=Chromosome chr1 scaffold_46, whole genome shotgun sequence; (121 aa)	•				•	•	•		0.847
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•						•		0.803
	GSVIVG00028552001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (423 aa)	•						•		0.776
	GSVIVG00016388001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (214 aa)	•						•		0.759
	GSVIVG00014532001	SubName- Full=Putative uncharacterized protein (Chromosome chr18 scaffold_1, whole genome shotg [...] (114 aa)	•				•	•	•		0.757
	GSVIVG00019349001	RecName- Full=Ribonucleoside-diphosphate reductase; EC=1.17.4.1;; Provides the precursors neces [...] (790 aa)							•		0.740
	GSVIVG00022843001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (447 aa)	•						•		0.726

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	382
TIGR01292	299	TIGR01292, TRX_reduct, thioredoxin-disulfide reduc	1e-157
COG0492	305	COG0492, TrxB, Thioredoxin reductase [Posttranslat	1e-124
PRK10262	321	PRK10262, PRK10262, thioredoxin reductase; Provisi	3e-91
TIGR03143	555	TIGR03143, AhpF_homolog, putative alkyl hydroperox	2e-72
pfam07992	283	pfam07992, Pyr_redox_2, Pyridine nucleotide-disulp	2e-58
TIGR03140	515	TIGR03140, AhpF, alkyl hydroperoxide reductase sub	3e-52
COG3634	520	COG3634, AhpF, Alkyl hydroperoxide reductase, larg	4e-52
PRK15317	517	PRK15317, PRK15317, alkyl hydroperoxide reductase	5e-52
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	2e-16
PRK11749	457	PRK11749, PRK11749, dihydropyrimidine dehydrogenas	6e-15
pfam00070	82	pfam00070, Pyr_redox, Pyridine nucleotide-disulphi	1e-14
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	2e-12
COG0446	415	COG0446, HcaD, Uncharacterized NAD(FAD)-dependent	2e-12
PRK12831	464	PRK12831, PRK12831, putative oxidoreductase; Provi	3e-12
TIGR04018	316	TIGR04018, Bthiol_YpdA, putative bacillithiol syst	9e-12
PRK12810	471	PRK12810, gltD, glutamate synthase subunit beta; R	1e-10
COG0493	457	COG0493, GltD, NADPH-dependent glutamate synthase	8e-10
PRK07251	438	PRK07251, PRK07251, pyridine nucleotide-disulfide	2e-09
COG2072	443	COG2072, TrkA, Predicted flavoprotein involved in	2e-09
TIGR03385	427	TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase	4e-09
PRK06116	450	PRK06116, PRK06116, glutathione reductase; Validat	6e-09
TIGR01316	449	TIGR01316, gltA, glutamate synthase (NADPH), homot	6e-09
TIGR01350	460	TIGR01350, lipoamide_DH, dihydrolipoamide dehydrog	8e-09
PRK06370	463	PRK06370, PRK06370, mercuric reductase; Validated	1e-08
pfam13738	202	pfam13738, Pyr_redox_3, Pyridine nucleotide-disulp	2e-08
TIGR02053	463	TIGR02053, MerA, mercuric reductase	2e-08
PRK12778	752	PRK12778, PRK12778, putative bifunctional 2-polypr	2e-08
PRK12770	352	PRK12770, PRK12770, putative glutamate synthase su	3e-08
PRK09853	1019	PRK09853, PRK09853, putative selenate reductase su	3e-08
PRK12771	564	PRK12771, PRK12771, putative glutamate synthase (N	2e-07
TIGR03169	364	TIGR03169, Nterm_to_SelD, pyridine nucleotide-disu	5e-07
PRK12779	944	PRK12779, PRK12779, putative bifunctional glutamat	7e-07
TIGR02374	785	TIGR02374, nitri_red_nirB, nitrite reductase [NAD(	8e-07
TIGR03315	1012	TIGR03315, Se_ygfK, putative selenate reductase, Y	2e-06
PRK06327	475	PRK06327, PRK06327, dihydrolipoamide dehydrogenase	6e-06
PRK12775	1006	PRK12775, PRK12775, putative trifunctional 2-polyp	7e-06
PRK12814	652	PRK12814, PRK12814, putative NADPH-dependent gluta	1e-05
TIGR03997	645	TIGR03997, mycofact_OYE_2, mycofactocin system Fad	1e-05
PRK06416	462	PRK06416, PRK06416, dihydrolipoamide dehydrogenase	3e-05
TIGR01421	450	TIGR01421, gluta_reduc_1, glutathione-disulfide re	3e-05
TIGR01424	446	TIGR01424, gluta_reduc_2, glutathione-disulfide re	3e-05
COG1252	405	COG1252, Ndh, NADH dehydrogenase, FAD-containing s	3e-05
PRK13512	438	PRK13512, PRK13512, coenzyme A disulfide reductase	3e-05
PRK07818	466	PRK07818, PRK07818, dihydrolipoamide dehydrogenase	9e-05
PLN02507	499	PLN02507, PLN02507, glutathione reductase	1e-04
COG1251	793	COG1251, NirB, NAD(P)H-nitrite reductase [Energy p	2e-04
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	3e-04
PRK09564	444	PRK09564, PRK09564, coenzyme A disulfide reductase	6e-04
TIGR00275	400	TIGR00275, TIGR00275, flavoprotein, HI0933 family	0.001
PRK07846	451	PRK07846, PRK07846, mycothione reductase; Reviewed	0.001
PRK06912	458	PRK06912, acoL, dihydrolipoamide dehydrogenase; Va	0.003

>gnl|CDD|233345 TIGR01292, TRX_reduct, thioredoxin-disulfide reductase

 Score =  443 bits (1143), Expect = e-157
 Identities = 178/310 (57%), Positives = 224/310 (72%), Gaps = 12/310 (3%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
            V IIG+GPA  TAAIYAARA LKP+L EG       PGGQLTTT++VEN+PGFP+GI G
Sbjct: 1   DVIIIGAGPAGLTAAIYAARANLKPLLIEGGE-----PGGQLTTTTEVENYPGFPEGISG 55

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ 178
            +LM++ + Q+++FG +I  E V KVD   RPFKV+T D K   A  VI+ATGA A+KL 
Sbjct: 56  PELMEKMKEQAVKFGAEIIYEEVIKVDKSGRPFKVYTGDGKEYTAKAVIIATGASARKLG 115

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            PG D FW RG+S CA CDG  P F++K +AV+GGGDSA+EEA +LT+   KV ++HRRD
Sbjct: 116 IPGEDEFWGRGVSYCATCDG--PFFKNKEVAVVGGGDSAIEEALYLTRIAKKVTLVHRRD 173

Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
            FRA KI+ +R   NPKI+ +WNS V E  G+     + G+K+KN VTG+  +L+V G+F
Sbjct: 174 KFRAEKILLDRLKKNPKIEFLWNSTVKEIVGDN---KVEGVKIKNTVTGEEEELEVDGVF 230

Query: 299 FAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358
            AIGHEP T+ + G L+L  +GYI+T  G   TSVPGVFAAGDV+DK YRQAVTAAG GC
Sbjct: 231 IAIGHEPNTELLKGLLELDENGYIVTDEG-MRTSVPGVFAAGDVRDKGYRQAVTAAGDGC 289

Query: 359 MAALEAEHYL 368
           +AAL AE YL
Sbjct: 290 IAALSAERYL 299

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070) [Energy metabolism, Electron transport]. Length = 299

>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

 Score =  359 bits (924), Expect = e-124
 Identities = 156/312 (50%), Positives = 201/312 (64%), Gaps = 15/312 (4%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGIL 118
            V IIG GPA  TAAIYAARA LK  ++ EG       PGGQLT T+DVEN+PGFP GIL
Sbjct: 5   DVIIIGGGPAGLTAAIYAARAGLKVVLILEG-----GEPGGQLTKTTDVENYPGFPGGIL 59

Query: 119 GGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178
           G +LM++ + Q+ +FG +I  + V KV+ +  PFKV TD  +  A  VI+ATGA A+KL 
Sbjct: 60  GPELMEQMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLG 119

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            PG + F  +G+S CA CDG    F+ K + VIGGGDSA+EEA +L+K   KV ++HRRD
Sbjct: 120 VPGEEEFEGKGVSYCATCDG---FFKGKDVVVIGGGDSAVEEALYLSKIAKKVTLVHRRD 176

Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
            FRA +I+  R   N KI+V+ N+VV E  G+  + V     +KN V G+  +L V G+F
Sbjct: 177 EFRAEEILVERLKKNVKIEVLTNTVVKEILGDDVEGV----VLKN-VKGEEKELPVDGVF 231

Query: 299 FAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358
            AIGH P T+ + G   L  +GYI+       TSVPG+FAAGDV DK  RQ  TAAG G 
Sbjct: 232 IAIGHLPNTELLKGLGVLDENGYIVVDEEME-TSVPGIFAAGDVADKNGRQIATAAGDGA 290

Query: 359 MAALEAEHYLQE 370
           +AAL AE YL+ 
Sbjct: 291 IAALSAERYLES 302

Length = 305

>gnl|CDD|182343 PRK10262, PRK10262, thioredoxin reductase; Provisional

 Score =  276 bits (708), Expect = 3e-91
 Identities = 149/324 (45%), Positives = 212/324 (65%), Gaps = 18/324 (5%)

Query: 59  TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGIL 118
           +K+ I+GSGPA +TAA+YAARA L+P+L  G     +  GGQLTTT++VEN+PG P  + 
Sbjct: 7   SKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPNDLT 61

Query: 119 GGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ 178
           G  LM+R    + +F T+I  + ++KVD ++RPF++  DS     D +I+ATGA A+ L 
Sbjct: 62  GPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLG 121

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IHRRD
Sbjct: 122 LPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD 179

Query: 239 SFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV-TGQVSDLKV 294
            FRA KI+  R +    N  I +  N  + E    GD+  + G+++++   +  +  L V
Sbjct: 180 GFRAEKILIKRLMDKVENGNIILHTNRTLEEV--TGDQMGVTGVRLRDTQNSDNIESLDV 237

Query: 295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQA 350
           +GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YRQA
Sbjct: 238 AGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQA 296

Query: 351 VTAAGTGCMAALEAEHYLQEIGSQ 374
           +T+AGTGCMAAL+AE YL  +   
Sbjct: 297 ITSAGTGCMAALDAERYLDGLADA 320

Length = 321

>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F subunit

 Score =  235 bits (600), Expect = 2e-72
 Identities = 125/332 (37%), Positives = 182/332 (54%), Gaps = 24/332 (7%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           + IIG GPA  +A IYA RA+L  ++ E    +D   GGQ+T TS+V N+PG      G 
Sbjct: 7   LIIIGGGPAGLSAGIYAGRAKLDTLIIE---KDDF--GGQITITSEVVNYPGILN-TTGP 60

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP 180
           +LM   R Q+  FG +     V  VDF      + T         V++ATGA  +KL FP
Sbjct: 61  ELMQEMRQQAQDFGVKFLQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFP 120

Query: 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
           G + F  RG++ CA CDG    F    + VIGGG +A EEA FLT+Y SKV +I R   F
Sbjct: 121 GEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178

Query: 241 RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS----- 295
             +K++  +   +PKI+V +N+ + EA G+     L   K  N VTG++++ K       
Sbjct: 179 TCAKLIAEKVKNHPKIEVKFNTELKEATGDD---GLRYAKFVNNVTGEITEYKAPKDAGT 235

Query: 296 -GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA 354
            G+F  +G+ P+++   G ++L   GYI T      T+VPGV+AAGD++ K+ RQ VTA 
Sbjct: 236 FGVFVFVGYAPSSELFKGVVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAV 294

Query: 355 GTGCMAALEAEHYLQE------IGSQEDKSES 380
             G +AA  AE Y++E      I  + ++ E+
Sbjct: 295 ADGAIAATSAERYVKELKEKLGIAEEYEEEEA 326

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). Length = 555

>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide oxidoreductase

 Score =  191 bits (487), Expect = 2e-58
 Identities = 83/292 (28%), Positives = 121/292 (41%), Gaps = 13/292 (4%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
            V IIG GPA   AAI  AR  LK  L E          G L     +E   G     +G
Sbjct: 1   DVVIIGGGPAGLAAAIRLARLGLKVALIER-EGGTCYNRGCLPKKLLLEVAEGLEL-AIG 58

Query: 120 GDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPF--KVFTDSKSVLADTVIVATGAVAKK 176
             L +        FG ++   T V  +D   +    K     + +  D +I+ATGA  + 
Sbjct: 59  LALPEEVYK---EFGVEVLLGTEVVDIDRGEKTVVLKDVETGREITYDKLIIATGARPRI 115

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
              PG +    RG+           +   K + V+GGG   +E A  L K G +V ++ R
Sbjct: 116 PGIPGVEVATLRGVIDSDEILELLELP--KRVVVVGGGYIGLELAAALAKLGKEVTVVER 173

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
           RD   A    +  A    K++ +   V +        KV  G KV  +  G   +L    
Sbjct: 174 RDRLLARADDEISAALLEKLEKLLLGVTVLLVVVVVVKVGDG-KVVEVKLGDGEELDADV 232

Query: 297 LFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY 347
           +  AIG  P T+ ++   ++L   GYI+       TSVPG++AAGDV + K 
Sbjct: 233 VLVAIGRRPNTELLEQAGVELDERGYIVVDE-YLRTSVPGIYAAGDVAEGKP 283

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 283

>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F

 Score =  181 bits (461), Expect = 3e-52
 Identities = 105/310 (33%), Positives = 161/310 (51%), Gaps = 14/310 (4%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V ++G GPA   AAIYAAR  L+       +A  I  GGQ+  T  +EN    P    G 
Sbjct: 215 VLVVGGGPAGAAAAIYAARKGLR----TAMVAERI--GGQVKDTVGIENLISVPY-TTGS 267

Query: 121 DLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQ 178
            L         ++   +       K++ +     V  +S  VL A +VIVATGA  +KL 
Sbjct: 268 QLAANLEEHIKQYPIDLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLG 327

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            PG   +  +G++ C  CDG  P F+ K +AVIGGG+S +E A  L      V ++   D
Sbjct: 328 VPGEKEYIGKGVAYCPHCDG--PFFKGKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFAD 385

Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
             +A K++Q++  + P +D++ ++   E  G+GDK  + G++ ++  +G+   L + G+F
Sbjct: 386 ELKADKVLQDKLKSLPNVDILTSAQTTEIVGDGDK--VTGIRYQDRNSGEEKQLDLDGVF 443

Query: 299 FAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358
             IG  P T+++   ++L+  G I+       TSVPG+FAAGDV    Y+Q + A G G 
Sbjct: 444 VQIGLVPNTEWLKDAVELNRRGEIVID-ERGRTSVPGIFAAGDVTTVPYKQIIIAMGEGA 502

Query: 359 MAALEAEHYL 368
            AAL A  YL
Sbjct: 503 KAALSAFDYL 512

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 515

>gnl|CDD|226160 COG3634, AhpF, Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

 Score =  181 bits (460), Expect = 4e-52
 Identities = 106/313 (33%), Positives = 164/313 (52%), Gaps = 17/313 (5%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP--QGI- 117
           V ++G GPA   AAIYAAR  ++     G +A     GGQ+  T  +ENF   P  +G  
Sbjct: 214 VLVVGGGPAGAAAAIYAARKGIR----TGLVAERF--GGQVLDTMGIENFISVPETEGPK 267

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKK 176
           L   L    +   +          +     +    +V   + +VL A TVI+ATGA  + 
Sbjct: 268 LAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRN 327

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           +  PG D + N+G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++  
Sbjct: 328 MNVPGEDEYRNKGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEF 385

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
               +A  ++Q++  + P + +I N+   E  G+GDK  + GL+ ++ V+G+   L++ G
Sbjct: 386 APELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDK--VTGLEYRDRVSGEEHHLELEG 443

Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIIT-KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
           +F  IG  P T+++ G ++L+  G II    G   T+VPGVFAAGD     Y+Q + A G
Sbjct: 444 VFVQIGLLPNTEWLKGAVELNRRGEIIVDARG--ETNVPGVFAAGDCTTVPYKQIIIAMG 501

Query: 356 TGCMAALEAEHYL 368
            G  A+L A  YL
Sbjct: 502 EGAKASLSAFDYL 514

Length = 520

>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional

 Score =  180 bits (460), Expect = 5e-52
 Identities = 111/311 (35%), Positives = 166/311 (53%), Gaps = 16/311 (5%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V ++G GPA   AAIYAAR  ++     G +A     GGQ+  T  +ENF   P+   G 
Sbjct: 214 VLVVGGGPAGAAAAIYAARKGIR----TGIVAERF--GGQVLDTMGIENFISVPE-TEGP 266

Query: 121 DLMDRCRNQSLRFGTQIFT-ETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQ 178
            L          +   I   +  SK++  +   +V   + +VL A TVI+ATGA  + + 
Sbjct: 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMN 326

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            PG D + N+G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++    
Sbjct: 327 VPGEDEYRNKGVAYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAP 384

Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
             +A +++Q++  + P + +I N+   E  G+GDK  + GL  K+  TG+   L++ G+F
Sbjct: 385 ELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGDK--VTGLTYKDRTTGEEHHLELEGVF 442

Query: 299 FAIGHEPATKFVDGQLDLHSDGYIIT-KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 357
             IG  P T+++ G ++L+  G II    G   TSVPGVFAAGD     Y+Q + A G G
Sbjct: 443 VQIGLVPNTEWLKGTVELNRRGEIIVDARG--ATSVPGVFAAGDCTTVPYKQIIIAMGEG 500

Query: 358 CMAALEAEHYL 368
             AAL A  YL
Sbjct: 501 AKAALSAFDYL 511

Length = 517

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 80.2 bits (199), Expect = 2e-16
 Identities = 79/334 (23%), Positives = 119/334 (35%), Gaps = 74/334 (22%)

Query: 56  TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT----------- 104
             K  V +IG+GPA + AA  AA+   K  L E          G L  T           
Sbjct: 1   MEKYDVIVIGAGPAGYVAARRAAKLGKKVALIE---------KGPLGGTCLNVGCIPSKA 51

Query: 105 --------SDVENFPGFPQGILGGD-------LMDRCRNQSLRF--GTQIFTETVSKVDF 147
                    + ++   F  GI           +M R R +  RF  G     E   K+D 
Sbjct: 52  LIAAAEAFHEAKHAEEF--GIHADGPKIDFKKVMARVRRERDRFVGGVVEGLEKKPKIDK 109

Query: 148 KSRPFK---VFTDSKSVL-------ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD 197
                K    F D  +V        A  +++ATG  ++    PG        +    +  
Sbjct: 110 ----IKGTARFVDPNTVEVNGERIEAKNIVIATG--SRVPPIPGVWLILGDRL----LTS 159

Query: 198 GAAPIFRDKP--LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQNRALT- 252
             A      P  LAVIGGG   +E    L++ G KV +  R D         +  +A   
Sbjct: 160 DDAFELDKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKI 219

Query: 253 -NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT---K 308
            + +  +   + V      GD+KV      +    G+   ++   +  A G  P T    
Sbjct: 220 LSKEFKIKLGAKVTSVEKSGDEKV-----EELEKGGKTETIEADYVLVATGRRPNTDGLG 274

Query: 309 FVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
             +  ++L   G  +     T TSVPG++AAGDV
Sbjct: 275 LENTGIELDERGRPVVDE-HTQTSVPGIYAAGDV 307

Length = 460

>gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional

 Score = 75.6 bits (187), Expect = 6e-15
 Identities = 94/345 (27%), Positives = 130/345 (37%), Gaps = 67/345 (19%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF--PQGI 117
           KV +IG+GPA  TAA   AR      +FE   A D   GG L         P F  P+ I
Sbjct: 142 KVAVIGAGPAGLTAAHRLARKGYDVTIFE---ARD-KAGGLLRY-----GIPEFRLPKDI 192

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA------DTVIVATG 171
           +     DR   + L+ G +I T T    D               L       D V + TG
Sbjct: 193 V-----DREVERLLKLGVEIRTNTEVGRDIT-------------LDELRAGYDAVFIGTG 234

Query: 172 A-VAKKLQFPGSDA----FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           A + + L  PG +          ++          +   K + VIGGG++AM+ A    +
Sbjct: 235 AGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVVIGGGNTAMDAARTAKR 294

Query: 227 YGSK-VYIIHRRD--SFRASKIMQNRA---------LTNPK-I---DVIWNSVVLEAYGE 270
            G++ V I++RR      AS+     A         L  P  I   +     V       
Sbjct: 295 LGAESVTIVYRRGREEMPASEEEVEHAKEEGVEFEWLAAPVEILGDEGRVTGVEFVRMEL 354

Query: 271 GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ--LDLHSDGYIITKPGT 328
           G+    G  +V   + G    L    +  AIG  P    +     L+L+  G II    T
Sbjct: 355 GEPDASGRRRV--PIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDET 412

Query: 329 THTSVPGVFAAGDVQDKKYRQA---VTAAGTGCMAALEAEHYLQE 370
             TS+PGVFA GD+       A   V A G G  AA     YL+ 
Sbjct: 413 GRTSLPGVFAGGDI----VTGAATVVWAVGDGKDAAEAIHEYLEG 453

Length = 457

>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide oxidoreductase

 Score = 68.4 bits (168), Expect = 1e-14
 Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 7/75 (9%)

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------ASKIMQNRALTNPKIDVIWN 261
           + V+GGG   +E A+ L K GSKV ++ RRD          +KI+Q + L    I+V+ N
Sbjct: 2   VVVVGGGYIGLEFASALAKLGSKVTVVERRDRLLRGFDEEIAKILQEK-LEKNGIEVLLN 60

Query: 262 SVVLEAYGEGDKKVL 276
           + V E  G GD  V+
Sbjct: 61  TTVEEIEGNGDGVVV 75

This family includes both class I and class II oxidoreductases and also NADH oxidases and peroxidases. This domain is actually a small NADH binding domain within a larger FAD binding domain. Length = 82

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 67.6 bits (166), Expect = 2e-12
 Identities = 55/219 (25%), Positives = 90/219 (41%), Gaps = 31/219 (14%)

Query: 153 KVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI 211
           +V  + K  + AD +I+ATG+  +    PG D       S     D    +   K L ++
Sbjct: 125 EVTGEDKETITADNIIIATGSRPRIPPGPGIDGARILDSS-----DALFLLELPKSLVIV 179

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSVVL 265
           GGG   +E A+     GSKV ++ R D          SK +  + L    + ++ N+ V 
Sbjct: 180 GGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKELT-KQLEKGGVKILLNTKVT 238

Query: 266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD----GQLDLHSDGY 321
               + D     G+ V  L  G+   ++   +  AIG +P T  +     G ++L   G+
Sbjct: 239 AVEKKDD-----GVLVT-LEDGEGGTIEADAVLVAIGRKPNTDGLGLENAG-VELDDRGF 291

Query: 322 IITKPGTTHTSVPGVFAAGDVQDKK------YRQAVTAA 354
           I        T+VPG++A GDV            +   AA
Sbjct: 292 IKVD-DQMTTNVPGIYAIGDVIGGPMLAHVAMAEGRIAA 329

Length = 454

>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

 Score = 67.2 bits (164), Expect = 2e-12
 Identities = 57/299 (19%), Positives = 98/299 (32%), Gaps = 44/299 (14%)

Query: 63  IIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE--NFPGFPQGILGG 120
           I+G G A  +AA    R  L         A +I     L                 + GG
Sbjct: 3   IVGGGAAGLSAATTLRRLLL---------AAEIT----LIGREPKYSYYRCPLSLYVGGG 49

Query: 121 --DLMDRCRNQSL--RFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
              L D           G  + T T V+ +D +++   V  D   +  D +++ATGA  +
Sbjct: 50  IASLEDLRYPPRFNRATGIDVRTGTEVTSIDPENK--VVLLDDGEIEYDYLVLATGARPR 107

Query: 176 KLQF---PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
                   G      R  +              K + V+G G   +E A    K G KV 
Sbjct: 108 PPPISDWEGVVTLRLREDAE----ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKRGKKVT 163

Query: 233 IIHRRDSFRA-------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV 285
           +I   D           ++ +         ++++  + V+   G+G+  V+  +   +  
Sbjct: 164 LIEAADRLGGQLLDPEVAEELAELLEKYG-VELLLGTKVVGVEGKGNTLVVERVVGIDGE 222

Query: 286 TGQVSDLKVSGLFFAIGHEPATKFV--DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
             +  DL    +    G  P              + G ++       +  P V+AAGDV
Sbjct: 223 EIKA-DL----VIIGPGERPNVVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDV 276

Length = 415

>gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 96/384 (25%), Positives = 146/384 (38%), Gaps = 95/384 (24%)

Query: 39  FSATTAPKISNAMDEIQTLKT---KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI 95
           F A  A +  N +D  +T +    KV +IGSGPA  T A   A+      +FE       
Sbjct: 120 FVADWARE--NGIDLSETEEKKGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHE--- 174

Query: 96  APGGQLTTTSDVENFPGF--PQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK 153
            PGG L     V   P F  P+      ++ +      + G +I T  V       +   
Sbjct: 175 -PGGVL-----VYGIPEFRLPKE----TVVKKEIENIKKLGVKIETNVVV-----GKTVT 219

Query: 154 VFTDSKSVLADTVIVATGA-VAKKLQFPGSDAFWNRGISA-----------CAVCDGAAP 201
           +    +    D V + +GA + K +  PG +   N   SA               +   P
Sbjct: 220 IDELLEEEGFDAVFIGSGAGLPKFMGIPGENL--NGVFSANEFLTRVNLMKAYKPEYDTP 277

Query: 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA----------- 250
           I   K +AV+GGG+ AM+ A    + G++V+I++RR    + + +  R            
Sbjct: 278 IKVGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRR----SEEELPARVEEVHHAKEEGV 333

Query: 251 ----LTNPKIDVI-----W-NSVVLEAY--GEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
               LTNP ++++     W   +       GE D     G +    + G    L+V  + 
Sbjct: 334 IFDLLTNP-VEILGDENGWVKGMKCIKMELGEPDAS---GRRRPVEIEGSEFVLEVDTVI 389

Query: 299 FAIGHEP------ATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
            ++G  P       TK     L ++  G I+    T  TS  GVFA GD        AVT
Sbjct: 390 MSLGTSPNPLISSTTK----GLKINKRGCIVADEETGLTSKEGVFAGGD--------AVT 437

Query: 353 AAGT-------GCMAALEAEHYLQ 369
            A T       G  AA   + YL 
Sbjct: 438 GAATVILAMGAGKKAAKAIDEYLS 461

Length = 464

>gnl|CDD|188533 TIGR04018, Bthiol_YpdA, putative bacillithiol system oxidoreductase, YpdA family

 Score = 65.3 bits (160), Expect = 9e-12
 Identities = 82/325 (25%), Positives = 129/325 (39%), Gaps = 79/325 (24%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFE-GWMANDIA--PGGQ-LTTTSDVENFPGFPQ 115
            V IIG+GP     AI A +A L  ++ E G + N I   P      +TS+     G P 
Sbjct: 1   DVIIIGAGPCGLACAIEAQKAGLSYLIIEKGNLVNSIYRYPTNMTFFSTSERLEIGGIPF 60

Query: 116 GILGGDLMDR-CRNQSL--------RFGTQIFT-ETVSKVDFKSRPFKVFTDSKSVLADT 165
                    +  RN++L        RF   I   E V KV      F+V T+  +  A  
Sbjct: 61  ISEN----PKPTRNEALEYYRRVAERFKLNIRLYEEVLKVKKTDGGFEVTTEKGTYQAKN 116

Query: 166 VIVATGA--VAKKLQFPGSD------------AFWNRGISACAVCDGAAPIFRDKPLAVI 211
           VIVATG   +   L  PG D             ++ + +                   V+
Sbjct: 117 VIVATGYYDIPNLLNVPGEDLPKVSHYYKEAHPYFGQKV------------------VVV 158

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-KI-----MQNRALTNPKIDVIWNSVVL 265
           GG +SA++ A  L + G++V ++HR D   +S K      ++NR +    I   +NS V 
Sbjct: 159 GGSNSAVDAALELYRKGAEVTMVHRGDEVSSSVKYWVRPDIENR-IKEGSIKAYFNSRVK 217

Query: 266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITK 325
           E   +        + ++    G+V  +    +F   G+ P  +F      L S G  + +
Sbjct: 218 EITED-------SVTLET-PDGEVHTIPNDFVFALTGYRPDFEF------LESLGVELDE 263

Query: 326 --------PGTTHTSVPGVFAAGDV 342
                   P T  T+VPG++ AG +
Sbjct: 264 DTGIPVYNPETMETNVPGLYLAGVI 288

Members of this protein family, including YpdA from Bacillus subtilis, are apparent oxidoreductases present only in species with an active bacillithiol system. They have been suggested actually to be thiol disulfide oxidoreductases (TDOR), although the evidence is incomplete [Unknown function, Enzymes of unknown specificity]. Length = 316

>gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed

 Score = 62.1 bits (152), Expect = 1e-10
 Identities = 91/357 (25%), Positives = 124/357 (34%), Gaps = 83/357 (23%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV ++GSGPA   AA   ARA  K  +FE     D   GG L          G P   L 
Sbjct: 145 KVAVVGSGPAGLAAADQLARAGHKVTVFE---RAD-RIGGLLRY--------GIPDFKLE 192

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA--DTVIVATGA-VAKK 176
            +++DR        G +  T      D           ++ +LA  D V + TGA   + 
Sbjct: 193 KEVIDRRIELMEAEGIEFRTNVEVGKDI---------TAEELLAEYDAVFLGTGAYKPRD 243

Query: 177 LQFPGSDAFWNRGI-----------SACAVCDGAAPI-FRDKPLAVIGGGDSAMEEANFL 224
           L  PG D     G+                 +    I  + K + VIGGGD+ M+     
Sbjct: 244 LGIPGRDL---DGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCVGTA 300

Query: 225 TKYGSKVYIIHRRDSFRASKIM----QNRALTNPKIDVIWNSVVLEAYGEGD-------- 272
            + G+K   + +RD      IM      R   NP         V  A+ EG         
Sbjct: 301 IRQGAK--SVTQRD------IMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQT 352

Query: 273 KKVLG------GLKVKNLVTGQVSDLKVSG---------LFFAIG--HEPATKFVDGQLD 315
           K+  G      G+KV     G+     V G         +  A+G     A       ++
Sbjct: 353 KEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVE 412

Query: 316 LHSDGYIITKPGTTHTSVPGVFAAGDV---QDKKYRQAVTAAGTGCMAALEAEHYLQ 369
           L   G +        TS P VFAAGD+   Q       V A   G  AA   + YL 
Sbjct: 413 LDERGRVAAPDNAYQTSNPKVFAAGDMRRGQS----LVVWAIAEGRQAARAIDAYLM 465

Length = 471

>gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

 Score = 60.0 bits (146), Expect = 8e-10
 Identities = 85/328 (25%), Positives = 116/328 (35%), Gaps = 72/328 (21%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV +IG+GPA   AA   +RA     +FE         GG L          G P   L 
Sbjct: 125 KVAVIGAGPAGLAAADDLSRAGHDVTVFE----RVALDGGLLLY--------GIPDFKLP 172

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA--DTVIVATGA-VAKK 176
            D++DR      R G +   +   +V    R   +    + +L   D V +ATGA   + 
Sbjct: 173 KDILDRRLELLERSGVEF--KLNVRVG---RDITL----EELLKEYDAVFLATGAGKPRP 223

Query: 177 LQFPGSDA----------FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           L  PG DA                      +   P  + K + VIGGGD+AM+ A    +
Sbjct: 224 LDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAGTALR 283

Query: 227 YGSK-VYIIHRRD--------SFRASKIMQNRA---------LTNPKIDVIWN------- 261
            G+K V   +R D           A+++    A            PK   I N       
Sbjct: 284 LGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPK-AFIGNEGGRVTG 342

Query: 262 ----SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP-ATKFVDGQLDL 316
                V    Y +G      G +    V G         +  AIG E  AT  +  +  L
Sbjct: 343 VKFGRVEPGEYVDG-----WGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGL 397

Query: 317 HSD--GYIITKPGTTHTSVPGVFAAGDV 342
             D  G I        TS+PGVFA GD 
Sbjct: 398 KLDKRGRIKVDENLQQTSIPGVFAGGDA 425

Length = 457

>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase; Provisional

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 51/201 (25%), Positives = 84/201 (41%), Gaps = 36/201 (17%)

Query: 157 DSKSVLADTVIVATGAVAKKLQFPG---SDAFWNR-GISACAVCDGAAPIFRDKPLAVIG 212
           +   + A+T+++ TGAV+  L  PG   S   ++  GI +             + L +IG
Sbjct: 113 EKIELTAETIVINTGAVSNVLPIPGLADSKHVYDSTGIQSLET--------LPERLGIIG 164

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQ---NRALTNPKIDVIWNSVVLEA 267
           GG+  +E A    K GSKV ++    +   R    +     + +    I  + N+   E 
Sbjct: 165 GGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEV 224

Query: 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG 327
             +GD+ +         V  +    +   L +A G +P T+     L L +    +T+ G
Sbjct: 225 KNDGDQVL---------VVTEDETYRFDALLYATGRKPNTE----PLGLENTDIELTERG 271

Query: 328 ------TTHTSVPGVFAAGDV 342
                    TSVPGVFA GDV
Sbjct: 272 AIKVDDYCQTSVPGVFAVGDV 292

Length = 438

>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 53/206 (25%), Positives = 79/206 (38%), Gaps = 26/206 (12%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPIL-FE-------GWMANDIAPGGQLTTTSDVEN 109
            T V IIG+G +   AA    +A +   + FE        W  N   PG +L +   +  
Sbjct: 8   HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYN-RYPGLRLDSPKWLLG 66

Query: 110 FPGFP----QGILGGD-----LMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSK 159
           FP  P    +           + D      LRF  +  T   V+  D  ++ + V T   
Sbjct: 67  FPFLPFRWDEAFAPFAEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDG 126

Query: 160 ---SVLADTVIVATGA--VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG 214
               + AD V+VATG         F G D F  R + +    +      R K + VIG G
Sbjct: 127 GTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILHSADWPNPED--LRGKRVLVIGAG 184

Query: 215 DSAMEEANFLTKYGSKVYIIHRRDSF 240
            SA++ A  L + G+ V +  R    
Sbjct: 185 ASAVDIAPELAEVGASVTLSQRSPPH 210

Length = 443

>gnl|CDD|163244 TIGR03385, CoA_CoA_reduc, CoA-disulfide reductase

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 45/191 (23%), Positives = 77/191 (40%), Gaps = 13/191 (6%)

Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAA---PIFRDKP--LAVIGGGDSAM 218
           D +I++ GA        G +   +   +   + D  A    I ++K   + +IGGG   +
Sbjct: 93  DYLILSPGASPIVPNIEGINL--DIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGI 150

Query: 219 EEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278
           E A  L + G  V +IHR +  R    + +  +     + +    +     E    + G 
Sbjct: 151 EMAEALRERGKNVTLIHRSE--RILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGE 208

Query: 279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVF 337
            +VK   +G V   +   +  A G +P ++   D  L L   G I        TSVP ++
Sbjct: 209 ERVKVFTSGGV--YQADMVILATGIKPNSELAKDSGLKLGETGAIWVNE-KFQTSVPNIY 265

Query: 338 AAGDVQDKKYR 348
           AAGDV +    
Sbjct: 266 AAGDVAESHNI 276

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol [Cellular processes, Detoxification]. Length = 427

>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated

 Score = 57.1 bits (139), Expect = 6e-09
 Identities = 62/222 (27%), Positives = 94/222 (42%), Gaps = 56/222 (25%)

Query: 152 FKVFTDSKSVL-------ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA----- 199
           F  F D+ +V        AD +++ATG        PG++     GI++    DG      
Sbjct: 114 FARFVDAHTVEVNGERYTADHILIATGGRPSIPDIPGAE----YGITS----DGFFALEE 165

Query: 200 APIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS----------KIMQNR 249
            P    K +AV+G G  A+E A  L   GS+ ++  R D+              + M+ +
Sbjct: 166 LP----KRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKK 221

Query: 250 ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF 309
                 I +  N+V        +K   G L +  L  G+   L V  L +AIG EP T  
Sbjct: 222 G-----IRLHTNAVPKAV----EKNADGSLTLT-LEDGET--LTVDCLIWAIGREPNT-- 267

Query: 310 VDG------QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
            DG       + L+  GYII      +T+VPG++A GDV  +
Sbjct: 268 -DGLGLENAGVKLNEKGYIIVD-EYQNTNVPGIYAVGDVTGR 307

Length = 450

>gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric

 Score = 56.8 bits (137), Expect = 6e-09
 Identities = 76/344 (22%), Positives = 123/344 (35%), Gaps = 60/344 (17%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
             KV +IG+GPA    A   A+A     +FE        PGG +T         G P+  
Sbjct: 133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHK----PGGVVTY--------GIPEFR 180

Query: 118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAK 175
           L  +++        + G        V K       F  +        D V + TGA + K
Sbjct: 181 LPKEIVVTEIKTLKKLGVTFRMNFLVGKTATLEELFSQY--------DAVFIGTGAGLPK 232

Query: 176 KLQFPG--------SDAFWNRG--ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLT 225
            +  PG        ++ F  R   + A        P++  K + VIGGG++A++ A    
Sbjct: 233 LMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSARTAL 292

Query: 226 KYGSKVYIIHRRD----SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG---- 277
           + G++V+ ++RR     + R  +I          +   +    +E  G+ +  V      
Sbjct: 293 RLGAEVHCLYRRTREDMTARVEEIAH---AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFR 349

Query: 278 ----------GLKVKNLVTGQVSDLKVSGLFFAIGHEP---ATKFVDGQLDLHSDGYIIT 324
                     G +           L+   +  AIG+       +    +L     G I+ 
Sbjct: 350 KMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAE--TTRLKTSERGTIVV 407

Query: 325 KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
                 TS+PGVFA GD+        + A G G  AA     YL
Sbjct: 408 DE-DQRTSIPGVFAGGDIILGAAT-VIRAMGQGKRAAKSINEYL 449

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449

>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase

 Score = 56.5 bits (137), Expect = 8e-09
 Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 31/216 (14%)

Query: 156 TDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP--LAVIGG 213
              +++ A  +I+ATG+  + L  PG   F  + +    +    A    + P  L +IGG
Sbjct: 125 NGEETLEAKNIIIATGSRPRSL--PGPFDFDGKVV----ITSTGALNLEEVPESLVIIGG 178

Query: 214 GDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSVVLEA 267
           G   +E A+     GSKV +I   D          SK++Q +AL    + ++ N+ V   
Sbjct: 179 GVIGVEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVLQ-KALKKKGVKILTNTKVTAV 237

Query: 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYIIT 324
               D+      + K    G+   L    +  A+G +P T+ +  +   ++L   G I+ 
Sbjct: 238 EKNDDQVT---YENKG---GETETLTGEKVLVAVGRKPNTEGLGLEKLGVELDERGRIVV 291

Query: 325 KPGTTHTSVPGVFAAGDVQDKK------YRQAVTAA 354
                 T+VPG++A GDV            + + AA
Sbjct: 292 D-EYMRTNVPGIYAIGDVIGGPMLAHVASHEGIVAA 326

This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. Length = 460

>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated

 Score = 56.4 bits (137), Expect = 1e-08
 Identities = 49/217 (22%), Positives = 79/217 (36%), Gaps = 52/217 (23%)

Query: 154 VFTDSKSVL-------ADTVIVATGAVAKKLQFPG--------SDAFWNRGISACAVCDG 198
            F    +V        A  + + TGA A     PG        ++  ++           
Sbjct: 118 RFESPNTVRVGGETLRAKRIFINTGARAAIPPIPGLDEVGYLTNETIFSLD--------- 168

Query: 199 AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR------RDSFRASKIMQNRALT 252
                  + L +IGGG   +E A    ++GS+V +I R      R+    +  ++   L 
Sbjct: 169 ----ELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVR-EILE 223

Query: 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG 312
              IDV  N+  +    +GD   +G         G   ++  S +  A+G  P T   D 
Sbjct: 224 REGIDVRLNAECIRVERDGDGIAVG-----LDCNGGAPEITGSHILVAVGRVPNT---DD 275

Query: 313 QLDLH-------SDGYIITKPGTTHTSVPGVFAAGDV 342
            L L        + GYI        T+ PG++AAGD 
Sbjct: 276 -LGLEAAGVETDARGYIKVD-DQLRTTNPGIYAAGDC 310

Length = 463

>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide oxidoreductase

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 54/211 (25%), Positives = 74/211 (35%), Gaps = 44/211 (20%)

Query: 62  CIIGSGPAAHTAAIYAARAELKP-ILFEGWMANDIAPGG---------QLTTTSDVENFP 111
            ++G+G A    A +       P I+ +        PGG         +L   S      
Sbjct: 1   LVVGAGAAGMAFADHLLDLGDAPVIIVD---RGA-QPGGHWRKWYPFVRLHQPSFFYGDF 56

Query: 112 GFPQG-------ILGGDLMDR-------CRNQSL---RFGTQIFTET-VSKVDFKSRPFK 153
           G P             D                    R+G  I   T V+ V+     F 
Sbjct: 57  GMPDLNALSIDTSPKWDGKAELASGAEIAAYLEDLARRYGLPIRLSTRVTAVERDGGRFV 116

Query: 154 V-FTDSKSVLADTVIVATGAVA--KKLQFPGSDAFWNRGISACAVCDG--AAPIFRDKPL 208
           V  TD ++V AD V+ ATGA +  K   FPG+DA                     + K +
Sbjct: 117 VRLTDGETVRADYVVDATGAFSVPKPPGFPGADA-------EGVHLVDVLERIDLKGKTV 169

Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239
           AVIGGG +A++ A  L   G  V  I RR S
Sbjct: 170 AVIGGGHTAIDAALNLLDLGKDVTWITRRPS 200

Length = 202

>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 62/237 (26%), Positives = 89/237 (37%), Gaps = 47/237 (19%)

Query: 154 VFTDSKSVLAD---------TVIVATGAVAKKLQFPG--------SDAFWNRGISACAVC 196
            F D K+V  D           ++ATGA       PG        S+             
Sbjct: 111 RFKDPKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAGYLTSEEAL---------- 160

Query: 197 DGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRA 250
              A     + LAVIGGG   +E A    + GS+V I+ R D          S  ++  A
Sbjct: 161 ---ALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEE-A 216

Query: 251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV 310
           L    I+V+ ++ V      G  K      +     G   +++   L  A G  P T  +
Sbjct: 217 LAEEGIEVVTSAQVKAVSVRGGGK-----IITVEKPGGQGEVEADELLVATGRRPNTDGL 271

Query: 311 DGQ---LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA 364
             +   + L   G I+    T  TS PG++AAGDV      + V AA  G +AA  A
Sbjct: 272 GLEKAGVKLDERGGILVDE-TLRTSNPGIYAAGDVTGGLQLEYV-AAKEGVVAAENA 326

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH [Cellular processes, Detoxification]. Length = 463

>gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 86/356 (24%), Positives = 139/356 (39%), Gaps = 82/356 (23%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV +IGSGPA  + A   A+      +FE         GG L          G P+  L 
Sbjct: 433 KVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE----IGGVLKY--------GIPEFRLP 480

Query: 120 GDLMDRCRNQSLRFGTQIFTE-----TVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-V 173
             ++D       + G +  T+     T++  + +   F             + +A+GA +
Sbjct: 481 KKIVDVEIENLKKLGVKFETDVIVGKTITIEELEEEGF-----------KGIFIASGAGL 529

Query: 174 AKKLQFPG--------SDAFWNR-GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFL 224
              +  PG        S+ +  R  +   A  D   PI   K +AV+GGG++AM+ A   
Sbjct: 530 PNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDSARTA 589

Query: 225 TKYGS-KVYIIHRRDSFRASKIMQNRA---------------LTNPKIDVI-----W-NS 262
            + G+ +V I++RR    + + M  R                L NP I+ +     W   
Sbjct: 590 KRLGAERVTIVYRR----SEEEMPARLEEVKHAKEEGIEFLTLHNP-IEYLADEKGWVKQ 644

Query: 263 VVLEAY--GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP---ATKFVDGQLDLH 317
           VVL+    GE D     G +    + G    + V  +  ++G  P       + G L+L+
Sbjct: 645 VVLQKMELGEPDAS---GRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPG-LELN 700

Query: 318 SDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT---AAGTGCMAALEAEHYLQE 370
             G I+       +S+PG++A GD+     R   T   A G G  AA   + YL  
Sbjct: 701 RKGTIVVDE-EMQSSIPGIYAGGDI----VRGGATVILAMGDGKRAAAAIDEYLSS 751

Length = 752

>gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional

 Score = 54.6 bits (132), Expect = 3e-08
 Identities = 81/340 (23%), Positives = 119/340 (35%), Gaps = 92/340 (27%)

Query: 60  KVCIIGSGPAAHTAA-----------IYAARAELKPILFEGWMANDIAPGGQLTTTSDVE 108
           KV IIG+GPA   AA           +Y    E               PGG +     + 
Sbjct: 20  KVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPE---------------PGGLM-----LF 59

Query: 109 NFPGF---PQGILGG--DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD--SKSV 161
             P F    + +  G  +L +         G    T T  KV       +   D   + +
Sbjct: 60  GIPEFRIPIERVREGVKELEEA--------GVVFHTRT--KVCCGEPLHEEEGDEFVERI 109

Query: 162 LA--------DTVIVATGA-VAKKLQFPGSDA----------FWNRGISACAVCDGAAPI 202
           ++        D V++ATG   ++KL  PG D           F  R      +     P 
Sbjct: 110 VSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPP 169

Query: 203 FRDKPLAVIGGGDSAM---EEANFLTKYGSKVYIIHRR--DSFRASKIMQNRALTNPKID 257
              K + V+G G +A+    EA  L     KVY+ +RR  +   A K    R L    ++
Sbjct: 170 VEGKKVVVVGAGLTAVDAALEAVLL--GAEKVYLAYRRTINEAPAGKYEIER-LIARGVE 226

Query: 258 VIWNSVVLEAYGEGDKKVLGGLKVK------------NLVTGQVSDLKVSGLFFAIGHEP 305
            +     +   GEG  + +   K++              + G    L+   + FAIG  P
Sbjct: 227 FLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIP 286

Query: 306 ATKFVDGQLDLHS--DGYIITKPGTTH-TSVPGVFAAGDV 342
              F    L +     G I+      H TS  GVFAAGDV
Sbjct: 287 TPPFAKECLGIELNRKGEIVVD--EKHMTSREGVFAAGDV 324

Length = 352

>gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional

 Score = 55.0 bits (133), Expect = 3e-08
 Identities = 69/318 (21%), Positives = 119/318 (37%), Gaps = 71/318 (22%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-PGF--P 114
           + KV +IG+GPA   AA + ARA     +FE     +   GG       V+N  P F  P
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFE----REENAGGV------VKNIIPQFRIP 588

Query: 115 QGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-V 173
             ++  D+ +  +   ++F     +  ++    K+  +           D V+VA GA  
Sbjct: 589 AELIQHDI-EFVKAHGVKFEFGC-SPDLTVEQLKNEGY-----------DYVVVAIGADK 635

Query: 174 AKKLQFPGSDAFWNRGISACAVCD--GAAPIFRD--KPLAVIGGGDSAMEEANFLTKYG- 228
              L+  G +      I A    +            K + V+GGG++AM+ A    +   
Sbjct: 636 NGGLKLEGGN---QNVIKALPFLEEYKNKGTALKLGKHVVVVGGGNTAMDAARAALRVPG 692

Query: 229 -SKVYIIHRR--DSFRASK------------IMQNRALTNPKIDVIWNSVV------LEA 267
             KV +++RR      A +              +   L NP      +  +      L  
Sbjct: 693 VEKVTVVYRRTKQEMPAWREEYEEALEDGVEFKE---LLNP-ESFDADGTLTCRVMKLGE 748

Query: 268 YGE-GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ-LDLHSDGYIITK 325
             E G ++ +         TG+   L+   +  AIG +  T+ +    + L   G+ +  
Sbjct: 749 PDESGRRRPVE--------TGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVD 800

Query: 326 PGTTHTSVPGVFAAGDVQ 343
                TS+  V+  GDVQ
Sbjct: 801 -ANGETSLTNVYMIGDVQ 817

Length = 1019

>gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional

 Score = 52.6 bits (127), Expect = 2e-07
 Identities = 86/345 (24%), Positives = 132/345 (38%), Gaps = 76/345 (22%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF--PG--FPQ 115
           +V +IG GPA  +AA +  R      +FE   A     GG +        +  P    P+
Sbjct: 139 RVAVIGGGPAGLSAAYHLRRMGHAVTIFE---AGP-KLGGMM-------RYGIPAYRLPR 187

Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-SKSVLA---DTVIVATG 171
            +L  ++      + L  G ++               +V  D +   L    D V VA G
Sbjct: 188 EVLDAEI-----QRILDLGVEVRLGV-----------RVGEDITLEQLEGEFDAVFVAIG 231

Query: 172 A-VAKKLQFPGSDAFWNRGISACAVCDGAA---PIFRDKPLAVIGGGDSAMEEANFLTKY 227
           A + K+L  PG DA     + A           P F  K + VIGGG++AM+ A    + 
Sbjct: 232 AQLGKRLPIPGEDA--AGVLDAVDFLRAVGEGEPPFLGKRVVVIGGGNTAMDAARTARRL 289

Query: 228 G-SKVYIIHRRD-------SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGL 279
           G  +V I++RR             + ++        +++ W    +E   EGD+    GL
Sbjct: 290 GAEEVTIVYRRTREDMPAHDEEIEEALRE------GVEINWLRTPVEI--EGDENGATGL 341

Query: 280 KVKNL-------------VTGQVSDLKVSGLFFAIGHEPATKF---VDGQLDLHSDGYII 323
           +V  +             VTG+   L+   +  AIG +  +     V G       G + 
Sbjct: 342 RVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVEV--GRGVVQ 399

Query: 324 TKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
             P    T  PGVFA GD+     R   TA G G  AA   + +L
Sbjct: 400 VDPNFMMTGRPGVFAGGDMV-PGPRTVTTAIGHGKKAARNIDAFL 443

Length = 564

>gnl|CDD|234134 TIGR03169, Nterm_to_SelD, pyridine nucleotide-disulfide oxidoreductase family protein

 Score = 50.7 bits (122), Expect = 5e-07
 Identities = 33/147 (22%), Positives = 50/147 (34%), Gaps = 22/147 (14%)

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN----------RALTNPK 255
           K LAV+GGG + +E A  L +   K  +  +      + ++            R L    
Sbjct: 146 KRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAGASLLPGFPAKVRRLVLRLLARRG 205

Query: 256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD 315
           I+V   + V                   L+      L    + +A G        +  L 
Sbjct: 206 IEVHEGAPVTRGPDGA------------LILADGRTLPADAILWATGARAPPWLAESGLP 253

Query: 316 LHSDGYIITKPGTTHTSVPGVFAAGDV 342
           L  DG++   P     S P VFAAGD 
Sbjct: 254 LDEDGFLRVDPTLQSLSHPHVFAAGDC 280

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. Length = 364

>gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

 Score = 51.0 bits (122), Expect = 7e-07
 Identities = 50/191 (26%), Positives = 78/191 (40%), Gaps = 40/191 (20%)

Query: 201 PIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS--------------------- 239
           P  + K + VIGGG++AM+ A    + G  V I++RR                       
Sbjct: 443 PEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHALEEGINLA 502

Query: 240 -FRASKIM----QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294
             RA +          +T+  +DV          GE DK   G    K   TG++  + V
Sbjct: 503 VLRAPREFIGDDHTHFVTHALLDVN-------ELGEPDKS--GRRSPKP--TGEIERVPV 551

Query: 295 SGLFFAIGHEPATKFVDGQLDLHSD--GYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
             +  A+G+       D +  L ++  G I  + G+  TS+ GV++ GD   +    A+ 
Sbjct: 552 DLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDAA-RGGSTAIR 610

Query: 353 AAGTGCMAALE 363
           AAG G  AA E
Sbjct: 611 AAGDGQAAAKE 621

Length = 944

>gnl|CDD|162827 TIGR02374, nitri_red_nirB, nitrite reductase [NAD(P)H], large subunit

 Score = 50.6 bits (121), Expect = 8e-07
 Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 25/220 (11%)

Query: 134 GTQIFT-ETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSD---AFWNR 188
           G  ++T ETV ++D   +  +V TD+   L+ D +I+ATG+    L  PG+D    +  R
Sbjct: 68  GITLYTGETVIQIDTDQK--QVITDAGRTLSYDKLILATGSYPFILPIPGADKKGVYVFR 125

Query: 189 GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN 248
            I         A  F+    AVIGGG   +E A  L   G  V +IH      A  +M  
Sbjct: 126 TIEDLDAIMAMAQRFKKA--AVIGGGLLGLEAAVGLQNLGMDVSVIH-----HAPGLMAK 178

Query: 249 R------ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG 302
           +       L   +++    + +LE       +++G  K   +     S L+   +  A G
Sbjct: 179 QLDQTAGRLLQRELEQKGLTFLLEKDTV---EIVGATKADRIRFKDGSSLEADLIVMAAG 235

Query: 303 HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
             P  +       +  +  II    +  TS P ++A G+ 
Sbjct: 236 IRPNDELA-VSAGIKVNRGIIVN-DSMQTSDPDIYAVGEC 273

[Central intermediary metabolism, Nitrogen metabolism]. Length = 785

>gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 71/328 (21%), Positives = 120/328 (36%), Gaps = 56/328 (17%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF--PQ 115
             KV +IG+GPA  +A  + ARA     +FE        PGG +         P F    
Sbjct: 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFE----KKEKPGGVVKNI-----IPEFRISA 587

Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
             +  D+ +  +   + F     +  ++  + K++ +K            VI+A GA   
Sbjct: 588 ESIQKDI-ELVKFHGVEFKYGC-SPDLTVAELKNQGYK-----------YVILAIGAWKH 634

Query: 176 ---KLQFPGSDAFWNRGISACAVCDGAAPIFR-DKPLAVIGGGDSAMEEANFLTKYG--S 229
              +L+  G      + +           I    K + V+GGG++AM+ A    +     
Sbjct: 635 GPLRLEGGGERVL--KSLEFLRAFKEGPTINPLGKHVVVVGGGNTAMDAARAALRVPGVE 692

Query: 230 KVYIIHRRD--SFRASKIMQNRA---------LTNPKIDVIWNSVVLEA----YGEGDKK 274
           KV +++RR      AS+     A         L +P     +    L       GE D  
Sbjct: 693 KVTVVYRRTKRYMPASREELEEALEDGVDFKELLSP---ESFEDGTLTCEVMKLGEPDAS 749

Query: 275 VLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSV 333
                + + + TG+  DL    +  A+G +  T  +    + L   G+ +    T  T++
Sbjct: 750 G----RRRPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNI 805

Query: 334 PGVFAAGDVQDKKYRQAVTAAGTGCMAA 361
             VF  GD   +     V A   G  AA
Sbjct: 806 TNVFVIGDAN-RGPATIVEAIADGRKAA 832

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012

>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated

 Score = 47.6 bits (114), Expect = 6e-06
 Identities = 56/200 (28%), Positives = 85/200 (42%), Gaps = 28/200 (14%)

Query: 156 TDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGI--SACAVCDGAAPIFRDKPLAVIGG 213
            D   + A  VI+ATG+  +    PG   F N+ I  +  A+     P    K LAVIG 
Sbjct: 139 EDETVITAKHVIIATGSEPR--HLPGV-PFDNKIILDNTGALNFTEVP----KKLAVIGA 191

Query: 214 GDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEA 267
           G   +E  +   + G++V I+    +F A      +K    +A T   +D+     +   
Sbjct: 192 GVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEAA-KAFTKQGLDIHLGVKI--- 247

Query: 268 YGEGDKKVLG-GLKVK-NLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ---LDLHSDGYI 322
              G+ K  G G+ V      G+   L+V  L  +IG  P T  +  +   L L   G+I
Sbjct: 248 ---GEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFI 304

Query: 323 ITKPGTTHTSVPGVFAAGDV 342
                   T+VP V+A GDV
Sbjct: 305 PVD-DHCRTNVPNVYAIGDV 323

Length = 475

>gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

 Score = 48.0 bits (114), Expect = 7e-06
 Identities = 84/317 (26%), Positives = 129/317 (40%), Gaps = 53/317 (16%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV I GSGPA   AA    +  +   ++E         GG L          G P   L 
Sbjct: 432 KVAICGSGPAGLAAAADLVKYGVDVTVYEALHV----VGGVLQY--------GIPSFRLP 479

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK-LQ 178
            D++DR   + +  G +I T   +KV  K+       + K    D V +  GA A   L 
Sbjct: 480 RDIIDREVQRLVDIGVKIET---NKVIGKTFTVPQLMNDKGF--DAVFLGVGAGAPTFLG 534

Query: 179 FPGSDA----FWNRGISACAVCDGAAPIFRDKPL------AVIGGGDSAMEEANFLTKYG 228
            PG  A      N  ++   +  G    F D P+       VIG G++AM+      + G
Sbjct: 535 IPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRVAKRLG 594

Query: 229 S-KVYIIHRRDSFRA-SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV- 285
           +  V  ++RR    A ++I + R      ID  +    +E Y + +  V  G+KV+ +  
Sbjct: 595 APTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGSV-RGMKVEEMEL 653

Query: 286 -------------TGQVSDLKVSGLFFAIGHEP---ATKFVDGQLDLHSDGYIITKPG-- 327
                        TG+  DL+   + +A+G +     T+   G L L+  G I    G  
Sbjct: 654 GEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPG-LALNKWGNIAADDGKL 712

Query: 328 --TTHTSVPGVFAAGDV 342
             T  T++PGVFA GD+
Sbjct: 713 ESTQSTNLPGVFAGGDI 729

Length = 1006

>gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 93/347 (26%), Positives = 133/347 (38%), Gaps = 77/347 (22%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL------------TTTSDV 107
           KV IIG+GPA  TAA Y  R      +F+   AN+   GG +               +D+
Sbjct: 195 KVAIIGAGPAGLTAAYYLLRKGHDVTIFD---ANE-QAGGMMRYGIPRFRLPESVIDADI 250

Query: 108 ENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVI 167
                 P   +G +   R    +  FG  I  E + K +F                D V+
Sbjct: 251 A-----PLRAMGAEF--RF---NTVFGRDITLEELQK-EF----------------DAVL 283

Query: 168 VATGA-VAKKLQFPGSDAFW-NRGISACA-VCDGAAPIFRDKPLAVIGGGDSAMEEANFL 224
           +A GA  A K+  PG +      GI     V  G A     K + VIGGG++A++ A   
Sbjct: 284 LAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHP-GKKVVVIGGGNTAIDAARTA 342

Query: 225 TKYG-SKVYIIHRRD----SFRASKIMQN-------RALTNP-KIDVIWNSVVLEAY--- 268
            + G   V I++RR         ++I +        R L  P  I+     + L A    
Sbjct: 343 LRLGAESVTILYRRTREEMPANRAEIEEALAEGVSLRELAAPVSIERSEGGLELTAIKMQ 402

Query: 269 -GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVDGQLDLHSDGYIITK 325
            GE D+    G +    V G    L+   +  AIG +  P      G +    +G +   
Sbjct: 403 QGEPDES---GRRRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAG-IGTSRNGTVKVD 458

Query: 326 PGTTHTSVPGVFAAGDV---QDKKYRQAVTAAGTGCMAALEAEHYLQ 369
           P T  TSV GVFA GD     D     A+ A   G  AA   + +L 
Sbjct: 459 PETLQTSVAGVFAGGDCVTGAD----IAINAVEQGKRAAHAIDLFLN 501

Length = 652

>gnl|CDD|234436 TIGR03997, mycofact_OYE_2, mycofactocin system FadH/OYE family oxidoreductase 2

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 32/127 (25%), Positives = 53/127 (41%), Gaps = 26/127 (20%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           +V ++G GPA   AA  AAR   +  LFE     +   GGQ+   + +     F      
Sbjct: 381 RVLVVGGGPAGLEAAATAARRGHRVTLFE----REDRLGGQVRLAARLPGRGEF------ 430

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA---DTVIVATGAVAKK 176
            DL+    ++  R G ++     +             D++ VLA   D V+VATG+   +
Sbjct: 431 ADLIRNLASELRRAGVEVRLGVEA-------------DAELVLAEKPDAVVVATGSRPVR 477

Query: 177 LQFPGSD 183
             + G+ 
Sbjct: 478 PPWAGAA 484

The yeast protein called old yellow enzyme and FadH from Escherichia coli (2,4-dienoyl CoA reductase) are enzymes with 4Fe-4S, FMN, and FAD prosthetic groups, and interact with NADPH as well as substrate. Members of this related protein family occur in the vicinity of the putative mycofactocin biosynthesis operon in a number of Actinobacteria such as Frankia sp. and Rhodococcus sp., in Pelotomaculum thermopropionicum SI (Firmicutes), and in Geobacter uraniireducens Rf4 (Deltaproteobacteria). The function of this oxidoreductase is unknown. Length = 645

>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed

 Score = 45.5 bits (109), Expect = 3e-05
 Identities = 48/189 (25%), Positives = 78/189 (41%), Gaps = 28/189 (14%)

Query: 166 VIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-APIFRDKPLAVIGGGDSAMEEANFL 224
           +I+ATG+  ++L  PG +    R I      D A       K L VIGGG   +E A+  
Sbjct: 138 IILATGSRPREL--PGIE-IDGRVIWTS---DEALNLDEVPKSLVVIGGGYIGVEFASAY 191

Query: 225 TKYGSKVYIIHRRDS----FRA--SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278
              G++V I+              SK+ + RAL    I +   +   +   + D  V   
Sbjct: 192 ASLGAEVTIVEALPRILPGEDKEISKLAE-RALKKRGIKIKTGAKAKKV-EQTDDGV--- 246

Query: 279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG----QLDLHSD-GYIITKPGTTHTSV 333
             V     G+   L+   +  A+G  P T   +     +L + +D G+I        T+V
Sbjct: 247 -TVTLEDGGKEETLEADYVLVAVGRRPNT---ENLGLEELGVKTDRGFIEVD-EQLRTNV 301

Query: 334 PGVFAAGDV 342
           P ++A GD+
Sbjct: 302 PNIYAIGDI 310

Length = 462

>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase, animal/bacterial

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 60/224 (26%), Positives = 94/224 (41%), Gaps = 43/224 (19%)

Query: 155 FTDSKSV-------LADTVIVATGAVAKKL-QFPGSDAFWNRGISACAVCDGAAPIFR-- 204
           FT   +V        A  +++ATG         PG++     G  +    DG    F   
Sbjct: 115 FTKDGTVEVNGRDYTAPHILIATGGKPSFPENIPGAEL----GTDS----DG---FFALE 163

Query: 205 --DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FRASKIMQNRALT----NPKID 257
              K + ++G G  A+E A  L   GS+ +++ R +   R+   M +  +T       I+
Sbjct: 164 ELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGIN 223

Query: 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-- 315
           V   S  ++      +K + G  V +   G+  D  V  L +AIG +P TK     L+  
Sbjct: 224 VHKLSKPVKV-----EKTVEGKLVIHFEDGKSID-DVDELIWAIGRKPNTK--GLGLENV 275

Query: 316 ---LHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT-AAG 355
              L+  G II      +T+VPG++A GDV  K     V  AAG
Sbjct: 276 GIKLNEKGQIIVDE-YQNTNVPGIYALGDVVGKVELTPVAIAAG 318

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria [Energy metabolism, Electron transport]. Length = 450

>gnl|CDD|213618 TIGR01424, gluta_reduc_2, glutathione-disulfide reductase, plant

 Score = 45.6 bits (108), Expect = 3e-05
 Identities = 47/211 (22%), Positives = 78/211 (36%), Gaps = 43/211 (20%)

Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
           +V    K+  A+ +++A G    K   PG +     GI++        P    K + + G
Sbjct: 121 EVLASGKTYTAEKILIAVGGRPPKPALPGHEL----GITSNEAFH--LPTL-PKSILIAG 173

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN----------RALTNPKIDVIWNS 262
           GG  A+E A      G +  +I     +R  +I++            AL    I ++   
Sbjct: 174 GGYIAVEFAGIFRGLGVQTTLI-----YRGKEILRGFDDDMRRGLAAALEERGIRILPED 228

Query: 263 VV--LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG 320
            +  +    +G  K     K + +V   V         FA G  P T      L L + G
Sbjct: 229 SITSISKDDDGRLKATLS-KHEEIVADVV--------LFATGRSPNTN----GLGLEAAG 275

Query: 321 YIITKPGT------THTSVPGVFAAGDVQDK 345
             +   G       + TS P ++A GDV D+
Sbjct: 276 VRLNDLGAIAVDEYSRTSTPSIYAVGDVTDR 306

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria [Energy metabolism, Electron transport]. Length = 446

>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 45/236 (19%), Positives = 80/236 (33%), Gaps = 48/236 (20%)

Query: 141 TVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPG-----------SDA--FW 186
            V+ +D  ++  KV       ++ D ++VA G+       PG            DA    
Sbjct: 79  EVTDIDRDAK--KVTLADLGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLR 136

Query: 187 NRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------ 240
              + A               + ++GGG + +E A  L +   ++    R D        
Sbjct: 137 RHLLEAFEKASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVIL 196

Query: 241 --RASKIMQN----------RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ 288
                +I+            RAL    ++V+  + V E   +G     G  ++       
Sbjct: 197 VEAGPRILPMFPPKLSKYAERALEKLGVEVLLGTPVTEVTPDGVTLKDGEEEIP------ 250

Query: 289 VSDLKVSGLFFAIGHEPATKFVDGQLDLHSD--GYIITKPGTTHTSVPGVFAAGDV 342
            +D  V    +A G   A+  +     L +D  G ++  P       P +FAAGD 
Sbjct: 251 -ADTVV----WAAGVR-ASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDIFAAGDC 300

Length = 405

>gnl|CDD|184103 PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 29/244 (11%)

Query: 135 TQIFTE--TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISA 192
             I  E  TV+ ++ K+   + F +S     D +I++ GA A  L F     F  R +  
Sbjct: 82  IAINDERQTVTVLNRKTN--EQFEES----YDKLILSPGASANSLGFESDITFTLRNLED 135

Query: 193 CAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALT 252
               D      +     V+G G  ++E    L + G    +IHR D    +K+M +  + 
Sbjct: 136 TDAIDQFIKANQVDKALVVGAGYISLEVLENLYERGLHPTLIHRSDKI--NKLM-DADMN 192

Query: 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT---GQVSDLKVSGLFFAIGHEPATKF 309
            P +D +    +     E    + G     N VT   G+V    +  +   +G  P +KF
Sbjct: 193 QPILDELDKREIPYRLNEEIDAING-----NEVTFKSGKVEHYDM--IIEGVGTHPNSKF 245

Query: 310 VDG-QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR------QAVTAAGTGCMAAL 362
           ++   + L   G+I        T+VP ++A GD+    YR          A G    A++
Sbjct: 246 IESSNIKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGAHRAASI 304

Query: 363 EAEH 366
            AE 
Sbjct: 305 VAEQ 308

Length = 438

>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 62/225 (27%), Positives = 95/225 (42%), Gaps = 46/225 (20%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP--LAVIGGGD 215
           +++V  D  I+ATG+  + L  PG+       +S   V      + R+ P  + + G G 
Sbjct: 131 TETVTFDNAIIATGSSTRLL--PGTS------LSENVVTYEEQILSRELPKSIVIAGAGA 182

Query: 216 SAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKV 275
             ME A  L  YG  V I+   D          RAL N   +V  +  + + Y +   K+
Sbjct: 183 IGMEFAYVLKNYGVDVTIVEFLD----------RALPNEDAEV--SKEIAKQYKKLGVKI 230

Query: 276 LGGLKVKNL--------VT-----GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYI 322
           L G KV+++        VT     G+  +L+   +  AIG  P    V+G   L   G  
Sbjct: 231 LTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR---VEG-YGLEKTGVA 286

Query: 323 ITKPG------TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAA 361
           +T  G         T+VP ++A GDV   K + A  A   G +AA
Sbjct: 287 LTDRGAIAIDDYMRTNVPHIYAIGDVT-AKLQLAHVAEAQGVVAA 330

Length = 466

>gnl|CDD|215281 PLN02507, PLN02507, glutathione reductase

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 49/204 (24%), Positives = 85/204 (41%), Gaps = 40/204 (19%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP--LAVIGGGD 215
                A  +++ATG+ A++   PG +          A+    A    + P    V+GGG 
Sbjct: 163 KLRYTAKHILIATGSRAQRPNIPGKE---------LAITSDEALSLEELPKRAVVLGGGY 213

Query: 216 SAMEEANFLTKYGSKVYIIHRR--------DSFRASKIMQNRALTNPKIDVIWNSVVLEA 267
            A+E A+     G+ V +  R+        D  RA   +  R L    I++   + + + 
Sbjct: 214 IAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRA---VVARNLEGRGINLHPRTNLTQL 270

Query: 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG 327
                 K  GG+KV   +T    +     + FA G  P TK    +L+L + G  + K G
Sbjct: 271 -----TKTEGGIKV---ITDHGEEFVADVVLFATGRAPNTK----RLNLEAVGVELDKAG 318

Query: 328 T------THTSVPGVFAAGDVQDK 345
                  + T++P ++A GDV ++
Sbjct: 319 AVKVDEYSRTNIPSIWAIGDVTNR 342

Length = 499

>gnl|CDD|224171 COG1251, NirB, NAD(P)H-nitrite reductase [Energy production and conversion]

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 54/214 (25%), Positives = 88/214 (41%), Gaps = 26/214 (12%)

Query: 140 ETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSD---AFWNRGISAC-A 194
           E V ++D  ++   V TD+   ++ D +I+ATG+    L  PGSD    F  R I    A
Sbjct: 80  EKVIQIDRANK--VVTTDAGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEA 137

Query: 195 VCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQN 248
           + D A      K   VIGGG   +E A  L   G +V ++H   +       R +  +  
Sbjct: 138 MLDCARN---KKKAVVIGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLR 194

Query: 249 RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK 308
           R L +  I V+      E  GE   +   G++  +   G    +    +  A+G  P  +
Sbjct: 195 RKLEDLGIKVLLEKNTEEIVGEDKVE---GVRFAD---GTE--IPADLVVMAVGIRPNDE 246

Query: 309 FVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  L  +  I+       TS P ++A G+ 
Sbjct: 247 LAK-EAGLAVNRGIVVN-DYMQTSDPDIYAVGEC 278

Length = 793

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 58/211 (27%), Positives = 83/211 (39%), Gaps = 33/211 (15%)

Query: 159 KSVLADTVIVATGAVAKKLQFPG--SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS 216
           + V  D  ++ATGA       PG     +W    S  A+     P    + LAVIG    
Sbjct: 229 RVVAFDRCLIATGASPAVPPIPGLKETPYWT---STEALVSDTIP----ERLAVIGSSVV 281

Query: 217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALT----NPKIDVIWNSVVLEAYGEGD 272
           A+E A    + GSKV I+ R   F         A+T       I+V+ ++   +      
Sbjct: 282 ALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEGIEVLEHTQASQVAHVDG 341

Query: 273 KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----- 327
           + V        L TG   +L+   L  A G  P T      L L + G  +   G     
Sbjct: 342 EFV--------LTTGH-GELRADKLLVATGRAPNT----RSLALDAAGVTVNAQGAIVID 388

Query: 328 -TTHTSVPGVFAAGDVQDK-KYRQAVTAAGT 356
               TSVP ++AAGD  D+ ++     AAGT
Sbjct: 389 QGMRTSVPHIYAAGDCTDQPQFVYVAAAAGT 419

Length = 561

>gnl|CDD|181958 PRK09564, PRK09564, coenzyme A disulfide reductase; Reviewed

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 33/227 (14%)

Query: 134 GTQIFTET-VSKVDFKSRPFKV--------FTDSKSVLADTVIVATGAVAKKLQFPGSDA 184
           G  + TE  V KVD K++   V        F D+     D +++ATGA          + 
Sbjct: 70  GIDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDT----YDKLMIATGARPIIPPIKNINL 125

Query: 185 FWNRGISAC-AVCDGAA--PIFRD---KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
                +    ++ DG A   + +D   K + +IG G   +E        G  V II   D
Sbjct: 126 ---ENVYTLKSMEDGLALKELLKDEEIKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLED 182

Query: 239 SFRASKIMQN---RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295
                +I+ +   + +T+   + +  + V     E  K ++G  KV+ +VT +  + +  
Sbjct: 183 -----RILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDKVEGVVTDK-GEYEAD 236

Query: 296 GLFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGD 341
            +  A G +P T+F++   L    +G II       TS+  ++AAGD
Sbjct: 237 VVIVATGVKPNTEFLEDTGLKTLKNGAIIVDE-YGETSIENIYAAGD 282

Length = 444

>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family

 Score = 40.7 bits (96), Expect = 0.001
 Identities = 44/176 (25%), Positives = 58/176 (32%), Gaps = 59/176 (33%)

Query: 63  IIGSGPAAHTAAIYAARAELKPILFEGWMAND-------IAPGGQ--LTTTSDVENF--- 110
           IIG G A   AAI AAR  L  +L E    N        I+ GG+  LT +     F   
Sbjct: 2   IIGGGAAGLMAAITAAREGLSVLLLE---KNKKIGKKLLISGGGRCNLTNSCPTPEFVAY 58

Query: 111 ----PGFPQGILG----GDLMDRCRNQSL-----------------------------RF 133
                 F +  L      DL+D   +  L                               
Sbjct: 59  YPRNGKFLRSALSRFSNKDLIDFFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKEL 118

Query: 134 GTQIFTET-VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP--GSDAFW 186
           G +I T + V  +      F V T      AD VI+ATG ++    +P  GS    
Sbjct: 119 GVEILTNSKVKSIKKDDGGFGVETSGGEYEADKVIIATGGLS----YPQLGSTGDG 170

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae [Unknown function, Enzymes of unknown specificity]. Length = 400

>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 28/148 (18%)

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRD----------SFRASKIMQNRALTNPKID 257
           L ++GGG  A E A+  +  G +V +++R            S R +++   R       D
Sbjct: 169 LVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELASKR------WD 222

Query: 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQL 314
           V     V+    +G    L  L   + V   V       L  A G  P    +D     +
Sbjct: 223 VRLGRNVVGVSQDGSGVTL-RLDDGSTVEADV-------LLVATGRVPNGDLLDAAAAGV 274

Query: 315 DLHSDGYIITKPGTTHTSVPGVFAAGDV 342
           D+  DG ++       TS  GVFA GDV
Sbjct: 275 DVDEDGRVVVDE-YQRTSAEGVFALGDV 301

Length = 451

>gnl|CDD|180743 PRK06912, acoL, dihydrolipoamide dehydrogenase; Validated

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 73/339 (21%), Positives = 127/339 (37%), Gaps = 90/339 (26%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFE-----GWMANDIAPGGQLTTTSDVENFPGFP 114
           K+ +IG GPA + AAI AA+      L +     G   N+    G + T S +E+     
Sbjct: 2   KLVVIGGGPAGYVAAITAAQNGKNVTLIDEADLGGTCLNE----GCMPTKSLLES----- 52

Query: 115 QGILGGDLMDRCRNQSLRFG-------------------TQIFTETVSKVDF--KSRPFK 153
                 ++ D+ +  +  FG                   +QI T+ V  + +  K    K
Sbjct: 53  -----AEVHDKVKKAN-HFGITLPNGSISIDWKQMQARKSQIVTQLVQGIQYLMKKNKIK 106

Query: 154 VFTDSKSVL-----------------ADTVIVATGAVAKKLQFPGSDAFWNRGI--SACA 194
           V     S                   A+  I+A G+   +L F   D  W   I  S  A
Sbjct: 107 VIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDGKW---IINSKHA 163

Query: 195 VCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQN 248
           +   + P      L ++GGG    E A+  ++ G+KV I+              + I++ 
Sbjct: 164 MSLPSIP----SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILRE 219

Query: 249 RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK 308
           + L N  +  I+    L+      K+ L     +    G + ++    +  ++G +P  +
Sbjct: 220 K-LENDGVK-IFTGAALKGLNSYKKQAL----FEY--EGSIQEVNAEFVLVSVGRKPRVQ 271

Query: 309 FVDGQLDLHSDGYIITKPGTT-----HTSVPGVFAAGDV 342
               QL+L   G   +  G +      T+VP ++A GDV
Sbjct: 272 ----QLNLEKAGVQFSNKGISVNEHMQTNVPHIYACGDV 306

Length = 458

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	382
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	100.0
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	100.0
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	100.0
PRK10262	321	thioredoxin reductase; Provisional	100.0
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	100.0
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	100.0
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	100.0
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	100.0
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	100.0
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	100.0
PRK06370	463	mercuric reductase; Validated	100.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	100.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	100.0
PRK06116	450	glutathione reductase; Validated	100.0
PLN02507	499	glutathione reductase	100.0
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	100.0
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
TIGR02053	463	MerA mercuric reductase. This model represents the	100.0
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	100.0
PLN02546	558	glutathione reductase	100.0
PRK12831	464	putative oxidoreductase; Provisional	100.0
PRK14694	468	putative mercuric reductase; Provisional	100.0
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	100.0
PRK13512	438	coenzyme A disulfide reductase; Provisional	100.0
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	100.0
PRK07845	466	flavoprotein disulfide reductase; Reviewed	100.0
PRK14727	479	putative mercuric reductase; Provisional	100.0
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	100.0
PRK13748	561	putative mercuric reductase; Provisional	100.0
PRK09564	444	coenzyme A disulfide reductase; Reviewed	100.0
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	100.0
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	100.0
PTZ00058	561	glutathione reductase; Provisional	100.0
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	100.0
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
PRK07846	451	mycothione reductase; Reviewed	100.0
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	100.0
PTZ00052	499	thioredoxin reductase; Provisional	100.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	100.0
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	100.0
PRK14989	847	nitrite reductase subunit NirD; Provisional	100.0
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	100.0
PRK12779	944	putative bifunctional glutamate synthase subunit b	100.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	100.0
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	100.0
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	100.0
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	100.0
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	100.0
PTZ00153	659	lipoamide dehydrogenase; Provisional	100.0
PRK12814	652	putative NADPH-dependent glutamate synthase small	100.0
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	100.0
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	100.0
PRK12770	352	putative glutamate synthase subunit beta; Provisio	100.0
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	100.0
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	100.0
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	100.0
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	100.0
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	100.0
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	100.0
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	100.0
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	100.0
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	100.0
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	100.0
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	99.98
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	99.97
PRK13984	604	putative oxidoreductase; Provisional	99.97
PLN02852	491	ferredoxin-NADP+ reductase	99.97
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	99.97
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	99.97
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	99.97
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	99.97
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	99.97
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	99.96
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	99.96
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	99.95
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	99.92
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	99.9
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	99.9
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	99.9
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	99.89
PRK06567	1028	putative bifunctional glutamate synthase subunit b	99.88
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	99.87
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	99.87
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	99.85
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	99.84
PTZ00188	506	adrenodoxin reductase; Provisional	99.84
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	99.82
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	99.82
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	99.82
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	99.8
KOG2755	334	consensus Oxidoreductase [General function predict	99.7
COG2081	408	Predicted flavoproteins [General function predicti	99.66
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	99.62
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	99.49
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	99.39
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.39
PRK09897	534	hypothetical protein; Provisional	99.34
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	99.24
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	99.19
PLN02463	447	lycopene beta cyclase	99.19
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	99.18
PRK08275	554	putative oxidoreductase; Provisional	99.17
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.16
PRK10015	429	oxidoreductase; Provisional	99.16
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	99.16
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.15
PRK06847	375	hypothetical protein; Provisional	99.14
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.14
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	99.11
PRK10157	428	putative oxidoreductase FixC; Provisional	99.1
PRK14694	468	putative mercuric reductase; Provisional	99.1
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	99.09
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.09
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	99.08
PRK06834	488	hypothetical protein; Provisional	99.08
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	99.08
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.07
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.07
PRK14727	479	putative mercuric reductase; Provisional	99.06
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	99.06
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	99.06
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	99.05
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	99.05
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	99.05
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	99.04
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.03
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.03
TIGR02053	463	MerA mercuric reductase. This model represents the	99.03
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.03
PRK06370	463	mercuric reductase; Validated	99.03
PLN02697	529	lycopene epsilon cyclase	99.03
PRK08071	510	L-aspartate oxidase; Provisional	99.03
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.03
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.02
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	99.02
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	99.02
PRK08013	400	oxidoreductase; Provisional	99.02
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	99.01
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	99.01
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	99.01
PRK08244	493	hypothetical protein; Provisional	99.01
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	99.0
PRK13748	561	putative mercuric reductase; Provisional	99.0
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	99.0
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	99.0
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	99.0
PRK06184	502	hypothetical protein; Provisional	99.0
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.99
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	98.99
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.99
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.99
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.99
TIGR00275	400	flavoprotein, HI0933 family. The model when search	98.99
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	98.98
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.98
PRK07846	451	mycothione reductase; Reviewed	98.98
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.98
PLN02507	499	glutathione reductase	98.97
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.97
PRK07236	386	hypothetical protein; Provisional	98.96
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.96
PRK07190	487	hypothetical protein; Provisional	98.96
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.95
PRK06116	450	glutathione reductase; Validated	98.94
PRK09126	392	hypothetical protein; Provisional	98.94
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.94
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	98.93
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	98.92
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	98.92
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.92
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.92
PRK07845	466	flavoprotein disulfide reductase; Reviewed	98.92
PTZ00052	499	thioredoxin reductase; Provisional	98.91
PTZ00058	561	glutathione reductase; Provisional	98.9
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	98.9
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	98.9
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.9
PRK06126	545	hypothetical protein; Provisional	98.9
PRK06185	407	hypothetical protein; Provisional	98.9
PRK08163	396	salicylate hydroxylase; Provisional	98.9
PRK11445	351	putative oxidoreductase; Provisional	98.89
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	98.89
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.89
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.89
PRK07588	391	hypothetical protein; Provisional	98.88
PRK11728	393	hydroxyglutarate oxidase; Provisional	98.87
PRK12842	574	putative succinate dehydrogenase; Reviewed	98.87
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.86
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.85
PRK07045	388	putative monooxygenase; Reviewed	98.85
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	98.85
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	98.84
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	98.84
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.84
PRK06753	373	hypothetical protein; Provisional	98.84
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.83
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	98.82
PRK08401	466	L-aspartate oxidase; Provisional	98.82
PRK06996	398	hypothetical protein; Provisional	98.82
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	98.81
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.81
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	98.81
PLN02985	514	squalene monooxygenase	98.81
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.8
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	98.79
PLN02661	357	Putative thiazole synthesis	98.78
PLN02546	558	glutathione reductase	98.76
PRK09077	536	L-aspartate oxidase; Provisional	98.76
PRK05868	372	hypothetical protein; Validated	98.75
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.75
PTZ00383	497	malate:quinone oxidoreductase; Provisional	98.75
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.75
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.75
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	98.75
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.75
PRK06475	400	salicylate hydroxylase; Provisional	98.73
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	98.72
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	98.72
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.71
PRK13977	576	myosin-cross-reactive antigen; Provisional	98.7
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.7
PRK07538	413	hypothetical protein; Provisional	98.7
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.7
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	98.69
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.69
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	98.68
PRK13512	438	coenzyme A disulfide reductase; Provisional	98.68
PRK14989	847	nitrite reductase subunit NirD; Provisional	98.67
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	98.65
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	98.64
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	98.64
PRK08274	466	tricarballylate dehydrogenase; Validated	98.63
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	98.62
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.61
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.61
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.6
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	98.6
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	98.59
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	98.59
COG0579	429	Predicted dehydrogenase [General function predicti	98.58
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	98.58
PRK07121	492	hypothetical protein; Validated	98.58
PRK07804	541	L-aspartate oxidase; Provisional	98.58
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	98.58
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	98.58
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	98.57
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	98.57
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	98.56
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.56
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	98.56
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	98.56
PRK06175	433	L-aspartate oxidase; Provisional	98.56
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	98.54
PRK10262	321	thioredoxin reductase; Provisional	98.54
PRK08294	634	phenol 2-monooxygenase; Provisional	98.53
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.51
PLN02661	357	Putative thiazole synthesis	98.5
PTZ00367	567	squalene epoxidase; Provisional	98.5
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	98.49
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	98.48
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.48
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	98.48
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	98.47
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	98.46
PRK13339	497	malate:quinone oxidoreductase; Reviewed	98.46
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	98.46
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	98.46
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	98.43
PLN02815	594	L-aspartate oxidase	98.42
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	98.42
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	98.41
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	98.41
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.4
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.4
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.4
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.39
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	98.39
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	98.36
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.35
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	98.35
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.32
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	98.31
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	98.31
PRK07395	553	L-aspartate oxidase; Provisional	98.31
COG2081	408	Predicted flavoproteins [General function predicti	98.31
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.3
PLN02464	627	glycerol-3-phosphate dehydrogenase	98.29
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.29
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.27
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	98.27
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	98.27
PRK07512	513	L-aspartate oxidase; Provisional	98.26
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	98.23
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.23
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	98.21
PRK05257	494	malate:quinone oxidoreductase; Validated	98.2
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.19
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.18
PRK12839	572	hypothetical protein; Provisional	98.17
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	98.16
KOG2495	491	consensus NADH-dehydrogenase (ubiquinone) [Energy	98.15
PRK12770	352	putative glutamate synthase subunit beta; Provisio	98.15
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	98.14
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.11
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	98.08
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.08
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.07
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.07
PRK07208	479	hypothetical protein; Provisional	98.07
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	98.03
COG3349	485	Uncharacterized conserved protein [Function unknow	98.03
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	98.02
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.02
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.0
PRK11883	451	protoporphyrinogen oxidase; Reviewed	98.0
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	97.99
PLN02268	435	probable polyamine oxidase	97.97
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.97
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	97.95
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	97.94
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	97.93
PLN02576	496	protoporphyrinogen oxidase	97.91
PRK12831	464	putative oxidoreductase; Provisional	97.89
COG2907	447	Predicted NAD/FAD-binding protein [General functio	97.89
PRK07233	434	hypothetical protein; Provisional	97.88
PRK06847	375	hypothetical protein; Provisional	97.88
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.88
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	97.86
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.84
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.84
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	97.84
KOG2853	509	consensus Possible oxidoreductase [General functio	97.82
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.81
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	97.81
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.8
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	97.8
COG3573	552	Predicted oxidoreductase [General function predict	97.78
PRK08163	396	salicylate hydroxylase; Provisional	97.77
KOG1346	659	consensus Programmed cell death 8 (apoptosis-induc	97.77
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.77
PRK12416	463	protoporphyrinogen oxidase; Provisional	97.76
PLN02568	539	polyamine oxidase	97.76
KOG2852	380	consensus Possible oxidoreductase [General functio	97.76
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.75
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	97.75
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	97.74
PRK06834	488	hypothetical protein; Provisional	97.73
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.72
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.71
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.71
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	97.68
PRK08244	493	hypothetical protein; Provisional	97.68
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	97.67
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	97.67
PRK06184	502	hypothetical protein; Provisional	97.67
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.65
PRK12814	652	putative NADPH-dependent glutamate synthase small	97.65
PLN02852	491	ferredoxin-NADP+ reductase	97.64
PRK09126	392	hypothetical protein; Provisional	97.64
PLN02529	738	lysine-specific histone demethylase 1	97.61
PRK06475	400	salicylate hydroxylase; Provisional	97.61
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	97.59
PLN02676	487	polyamine oxidase	97.58
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.58
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	97.56
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.56
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.55
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.55
PRK05868	372	hypothetical protein; Validated	97.54
PRK06126	545	hypothetical protein; Provisional	97.53
COG1251	793	NirB NAD(P)H-nitrite reductase [Energy production	97.52
PRK07236	386	hypothetical protein; Provisional	97.52
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.51
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	97.51
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.5
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.5
PLN02328	808	lysine-specific histone demethylase 1 homolog	97.5
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	97.49
PTZ00188	506	adrenodoxin reductase; Provisional	97.49
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	97.48
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	97.47
PRK06753	373	hypothetical protein; Provisional	97.47
PRK06185	407	hypothetical protein; Provisional	97.45
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.45
PRK07588	391	hypothetical protein; Provisional	97.44
PRK07190	487	hypothetical protein; Provisional	97.43
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.43
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	97.42
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.42
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.42
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.41
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	97.41
PRK07045	388	putative monooxygenase; Reviewed	97.4
PLN02463	447	lycopene beta cyclase	97.38
PLN02487	569	zeta-carotene desaturase	97.37
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	97.37
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	97.37
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.37
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.34
PLN02612	567	phytoene desaturase	97.33
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.33
PRK08013	400	oxidoreductase; Provisional	97.33
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.32
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	97.3
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.29
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.28
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.28
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	97.27
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.24
PRK10157	428	putative oxidoreductase FixC; Provisional	97.23
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.23
PLN03000	881	amine oxidase	97.23
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.23
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.22
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.22
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.22
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.2
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	97.2
PRK13984	604	putative oxidoreductase; Provisional	97.19
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.18
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	97.14
PRK07538	413	hypothetical protein; Provisional	97.13
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.11
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.1
COG0579	429	Predicted dehydrogenase [General function predicti	97.09
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.09
PRK10015	429	oxidoreductase; Provisional	97.09
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	97.04
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.02
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	97.01
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	97.01
PLN02976	1713	amine oxidase	96.99
PRK09897	534	hypothetical protein; Provisional	96.98
PRK11445	351	putative oxidoreductase; Provisional	96.96
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	96.95
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	96.94
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.94
PRK11728	393	hydroxyglutarate oxidase; Provisional	96.93
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.92
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	96.92
PRK02106	560	choline dehydrogenase; Validated	96.91
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	96.91
PRK06996	398	hypothetical protein; Provisional	96.88
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	96.88
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	96.85
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	96.83
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	96.83
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	96.8
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	96.8
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	96.77
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	96.77
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	96.77
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	96.77
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.7
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	96.69
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	96.67
PLN02985	514	squalene monooxygenase	96.66
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	96.66
PLN02697	529	lycopene epsilon cyclase	96.66
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	96.65
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	96.63
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.63
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	96.62
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.56
PRK06567	1028	putative bifunctional glutamate synthase subunit b	96.5
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	96.49
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.46
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	96.42
KOG2960	328	consensus Protein involved in thiamine biosynthesi	96.41
PLN02815	594	L-aspartate oxidase	96.35
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	96.33
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.31
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.3
PRK08294	634	phenol 2-monooxygenase; Provisional	96.3
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	96.3
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	96.26
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	96.25
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	96.23
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	96.23
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	96.17
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	96.16
PRK08274	466	tricarballylate dehydrogenase; Validated	96.08
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	96.07
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	96.07
PLN02785	587	Protein HOTHEAD	96.03
PRK06175	433	L-aspartate oxidase; Provisional	95.99
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	95.98
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	95.92
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	95.92
PLN02464	627	glycerol-3-phosphate dehydrogenase	95.89
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	95.88
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	95.86
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.84
PRK07121	492	hypothetical protein; Validated	95.82
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	95.81
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.8
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	95.8

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.2e-48  Score=315.93  Aligned_cols=312  Identities=74%  Similarity=1.177  Sum_probs=295.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||+|||+..+|+++++..++.+|+|.+...+..+||++..+.+..+||+||+++.+.++.+.++++..+.|.+
T Consensus         7 h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT~veNfPGFPdgi~G~~l~d~mrkqs~r~Gt~   86 (322)
T KOG0404|consen    7 HNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTTDVENFPGFPDGITGPELMDKMRKQSERFGTE   86 (322)
T ss_pred             eeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeeeccccCCCCCcccccHHHHHHHHHHHHhhcce
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCC-cc-ccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS-DA-FWNRGISACAVCDGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~-~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  214 (382)
                      ++..+|.+++...+.+.+.++.+.+.+|.+|+|||...+...+||. +. ||.+.+..|..+++..+.+++|..+|||+|
T Consensus        87 i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrGiSaCAVCDGaapifrnk~laVIGGG  166 (322)
T KOG0404|consen   87 IITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRGISACAVCDGAAPIFRNKPLAVIGGG  166 (322)
T ss_pred             eeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcccchhhcccCcchhhcCCeeEEEcCc
Confidence            9999999999999999999999999999999999999988888887 33 999999999999999999999999999999


Q ss_pred             chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                      .+++|-|.+|.+.+.+|++++|++.++.+..|++++.+..+|++++++.+.+...+  |+.+.++.+++..+++...+++
T Consensus       167 DsA~EEA~fLtkyaskVyii~Rrd~fRAs~~Mq~ra~~npnI~v~~nt~~~ea~gd--~~~l~~l~ikn~~tge~~dl~v  244 (322)
T KOG0404|consen  167 DSAMEEALFLTKYASKVYIIHRRDHFRASKIMQQRAEKNPNIEVLYNTVAVEALGD--GKLLNGLRIKNVKTGEETDLPV  244 (322)
T ss_pred             HHHHHHHHHHHhhccEEEEEEEhhhhhHHHHHHHHHhcCCCeEEEechhhhhhccC--cccccceEEEecccCccccccc
Confidence            99999999999999999999999999999999999999999999999988888777  3457789999888888899999


Q ss_pred             CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +-++++.|..|++.+++..+++|++|++.+-+..-.|++|++||+||+.+.+++++..|...|..+|...-++|..
T Consensus       245 ~GlFf~IGH~Pat~~l~gqve~d~~GYi~t~pgts~TsvpG~FAAGDVqD~kyRQAvTaAgsGciaaldAe~yL~s  320 (322)
T KOG0404|consen  245 SGLFFAIGHSPATKFLKGQVELDEDGYIVTRPGTSLTSVPGVFAAGDVQDKKYRQAVTAAGSGCIAALDAERYLTS  320 (322)
T ss_pred             ceeEEEecCCchhhHhcCceeeccCceEEeccCcccccccceeeccccchHHHHHHHhhhccchhhhhhHHHHhhc
Confidence            9999999999999999878899999999999888999999999999999989999999999999999999999873

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6.6e-44  Score=320.27  Aligned_cols=301  Identities=51%  Similarity=0.827  Sum_probs=268.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+||+|||||||||+||.++.+.+.+ ++|+|     ...+||.+..+...++||+++......++.+.+++.+...++
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~-----~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~   76 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILE-----GGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGV   76 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEe-----cCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCe
Confidence            468999999999999999999999999 55555     346778888778999999999999999999999999999999


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ++....|..++..++.+.+.++++++++++||+|||..++.|.+||..+++.+.+++|..++.   .+.+++++|||+|+
T Consensus        77 ~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg---~~~~k~v~ViGgG~  153 (305)
T COG0492          77 EIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG---FFKGKDVVVIGGGD  153 (305)
T ss_pred             EEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc---cccCCeEEEEcCCH
Confidence            999988999988776889998888899999999999999999999888899999999999888   45688999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                      +|+|-|.+|.+.+++||+++|++.+.....+++++.+..+|++++++.+.++..++    ++++.+++.. +....+++|
T Consensus       154 sAve~Al~L~~~a~~Vtlv~r~~~~ra~~~~~~~l~~~~~i~~~~~~~i~ei~G~~----v~~v~l~~~~-~~~~~~~~~  228 (305)
T COG0492         154 SAVEEALYLSKIAKKVTLVHRRDEFRAEEILVERLKKNVKIEVLTNTVVKEILGDD----VEGVVLKNVK-GEEKELPVD  228 (305)
T ss_pred             HHHHHHHHHHHhcCeEEEEecCcccCcCHHHHHHHHhcCCeEEEeCCceeEEecCc----cceEEEEecC-CceEEEEec
Confidence            99999999999999999999999999988887776666699999999999999986    4458888754 445689999


Q ss_pred             eEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       296 ~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      .++++.|..|+..++.....++++|++.+|+ .++|+.|+|||+||++....+++..|..+|..||.++.++|...
T Consensus       229 gvf~~iG~~p~~~~~~~~~~~~~~g~I~v~~-~~~TsvpGifAaGDv~~~~~rqi~ta~~~G~~Aa~~a~~~l~~~  303 (305)
T COG0492         229 GVFIAIGHLPNTELLKGLGVLDENGYIVVDE-EMETSVPGIFAAGDVADKNGRQIATAAGDGAIAALSAERYLESL  303 (305)
T ss_pred             eEEEecCCCCchHHHhhccccCCCCcEEcCC-CcccCCCCEEEeEeeccCcccEEeehhhhHHHHHHHHHHHhhhc
Confidence            9999999999999887333378999999999 59999999999999998777799999999999999999999854

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=100.00  E-value=3.7e-43  Score=321.70  Aligned_cols=298  Identities=57%  Similarity=0.959  Sum_probs=248.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF  138 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  138 (382)
                      +||+|||||++|+++|..|++.|++|+|||+.    . .||.+.......++|+++......++.+++++.+++++++++
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~----~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~   75 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGM----E-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEII   75 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEecc----C-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEE
Confidence            58999999999999999999999999999952    2 577776665666677777667788999999999999999998


Q ss_pred             EeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchH
Q 016820          139 TETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA  217 (382)
Q Consensus       139 ~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a  217 (382)
                      ..+|.+++++++.+.+.+++ .+++||+||+|+|++|+.|.+||.+.++...++.+......  ...+++++|+|+|.+|
T Consensus        76 ~~~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~~  153 (300)
T TIGR01292        76 YEEVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASARKLGIPGEDEFLGRGVSYCATCDGP--FFKNKEVAVVGGGDSA  153 (300)
T ss_pred             EEEEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCcccCCCCChhhcCCccEEEeeecChh--hcCCCEEEEECCChHH
Confidence            88899999988778777654 57999999999999999999999877666666655554443  4567899999999999


Q ss_pred             HHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCC-CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          218 MEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNP-KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       218 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                      +|++..|.+.+.+|+++.+.+.+.....+.+ .+++. ||++++++++.+++.++.   +..+++.+...+++.++++|.
T Consensus       154 ~e~a~~l~~~~~~V~~v~~~~~~~~~~~~~~-~l~~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~D~  229 (300)
T TIGR01292       154 IEEALYLTRIAKKVTLVHRRDKFRAEKILLD-RLRKNPNIEFLWNSTVKEIVGDNK---VEGVKIKNTVTGEEEELKVDG  229 (300)
T ss_pred             HHHHHHHHhhcCEEEEEEeCcccCcCHHHHH-HHHhCCCeEEEeccEEEEEEccCc---EEEEEEEecCCCceEEEEccE
Confidence            9999999999999999999988776666654 45555 999999999999987652   445666544445567899999


Q ss_pred             EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHH
Q 016820          297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       297 vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      +++|+|++|+..++...+.++++|++.+|+ +++|++||||++|||+...++.+..|+.+|+.||.+|.++|
T Consensus       230 vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~~  300 (300)
T TIGR01292       230 VFIAIGHEPNTELLKGLLELDEGGYIVTDE-GMRTSVPGVFAAGDVRDKGYRQAVTAAGDGCIAALSAERYL  300 (300)
T ss_pred             EEEeeCCCCChHHHHHhheecCCCcEEECC-CCccCCCCEEEeecccCcchhhhhhhhhhHHHHHHHHHhhC
Confidence            999999999998876335667889999998 58899999999999997557889999999999999998764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK10262 thioredoxin reductase; Provisional

Probab=100.00  E-value=5.7e-42  Score=316.26  Aligned_cols=307  Identities=48%  Similarity=0.806  Sum_probs=254.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...+||+||||||||+++|..|++.|++++++|.    . ..||.+......+++|+.+.....+++.+++.+...++++
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~----~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG----M-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFET   78 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEe----e-cCCCceecCceECCCCCCCCCCCHHHHHHHHHHHHHHCCC
Confidence            4578999999999999999999999999999993    2 4577776666667778777778888999999999999999


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ++..+++..|+..++.|.+..+...+.||+||+|||++|+.|++||.+.++.+.++.+..++..  ...+++++|||+|.
T Consensus        79 ~~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~~~~~i~g~~~~~~~~v~~~~~~~~~--~~~g~~vvVvGgG~  156 (321)
T PRK10262         79 EIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGN  156 (321)
T ss_pred             EEEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCCCCCCCCCHHHcCCCcEEEeecCCHH--HcCCCEEEEECCCH
Confidence            8888888889988888888765567999999999999999999999777777777777776665  56789999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcchH---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC-CceEE
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRASK---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT-GQVSD  291 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~-~~~~~  291 (382)
                      +|+|+|..|.+.+++|+++++.+.+....   ....+.+++.||++++++.+.++..++.+  +..+++.+... ++..+
T Consensus       157 ~g~e~A~~l~~~~~~Vtlv~~~~~~~~~~~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~~~--~~~v~~~~~~~~~~~~~  234 (321)
T PRK10262        157 TAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMG--VTGVRLRDTQNSDNIES  234 (321)
T ss_pred             HHHHHHHHHHhhCCEEEEEEECCccCCCHHHHHHHHhhccCCCeEEEeCCEEEEEEcCCcc--EEEEEEEEcCCCCeEEE
Confidence            99999999999999999999988664322   22345677889999999999999876532  44577765321 23467


Q ss_pred             EecCeEEEeeCCCCChhhhcccccccCCCceeeCCC----CCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          292 LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       292 ~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~----~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      +++|.|++++|.+|+..++..++.+ ++|++.+|++    .++|++|||||+|||++...++...|+.+|..||..|.++
T Consensus       235 i~~D~vv~a~G~~p~~~l~~~~l~~-~~g~i~vd~~~~~~~~~t~~~~VyA~GD~~~~~~~~~~~A~~~g~~Aa~~~~~~  313 (321)
T PRK10262        235 LDVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERY  313 (321)
T ss_pred             EECCEEEEEeCCccChhHhhccccc-cCCEEEECCCCcccccccCCCCEEECeeccCCCcceEEEEehhHHHHHHHHHHH
Confidence            9999999999999999987655554 4689999973    4789999999999999765677788999999999999999


Q ss_pred             HHHcc
Q 016820          368 LQEIG  372 (382)
Q Consensus       368 l~~~~  372 (382)
                      |.+..
T Consensus       314 l~~~~  318 (321)
T PRK10262        314 LDGLA  318 (321)
T ss_pred             HHhcc
Confidence            98654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=100.00  E-value=7.9e-41  Score=328.26  Aligned_cols=304  Identities=39%  Similarity=0.649  Sum_probs=248.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .+||+||||||||+++|..|++.|++|+|||+.     ..||.+.......++|+.. ...+.++.+++++.++++++++
T Consensus         4 ~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-----~~GG~~~~~~~i~~~pg~~-~~~~~~l~~~l~~~~~~~gv~~   77 (555)
T TIGR03143         4 IYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-----DFGGQITITSEVVNYPGIL-NTTGPELMQEMRQQAQDFGVKF   77 (555)
T ss_pred             cCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-----CCCceEEeccccccCCCCc-CCCHHHHHHHHHHHHHHcCCEE
Confidence            489999999999999999999999999999952     4788777655555566553 3566789999999999999999


Q ss_pred             EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchH
Q 016820          138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA  217 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a  217 (382)
                      +.++|..++.+++.+.+.+.++.+.+++||+|||++|+.|++||.+.+..+.++.+..++..  ...+++++|||+|++|
T Consensus        78 ~~~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p~~~~ipG~~~~~~~~v~~~~~~~~~--~~~g~~VvVIGgG~~g  155 (555)
T TIGR03143        78 LQAEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASPRKLGFPGEEEFTGRGVAYCATCDGE--FFTGMDVFVIGGGFAA  155 (555)
T ss_pred             eccEEEEEEecCCEEEEEecCCEEEEeEEEECCCCccCCCCCCCHHHhCCceEEEEeecChh--hcCCCEEEEECCCHHH
Confidence            87789999987766777776778999999999999999999999876666667666665554  4568999999999999


Q ss_pred             HHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE--ecC
Q 016820          218 MEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL--KVS  295 (382)
Q Consensus       218 ~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~--~~D  295 (382)
                      +|+|..|.+.+.+|+++.+.+.+.......++++..+||++++++.+.++..++.   +..+.+....+++...+  ++|
T Consensus       156 ~E~A~~L~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~gV~i~~~~~V~~i~~~~~---v~~v~~~~~~~G~~~~~~~~~D  232 (555)
T TIGR03143       156 AEEAVFLTRYASKVTVIVREPDFTCAKLIAEKVKNHPKIEVKFNTELKEATGDDG---LRYAKFVNNVTGEITEYKAPKD  232 (555)
T ss_pred             HHHHHHHHccCCEEEEEEeCCccccCHHHHHHHHhCCCcEEEeCCEEEEEEcCCc---EEEEEEEECCCCCEEEEecccc
Confidence            9999999999999999999987755555555666677999999999999986542   33344443333433333  477


Q ss_pred             e----EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          296 G----LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       296 ~----vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      .    +++++|++|++.++...+.++++|++.||+ +++|++|+|||+|||+...++.+..|+.+|+.||.+|.++|.+.
T Consensus       233 ~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~v~~A~~~G~~Aa~~i~~~l~~~  311 (555)
T TIGR03143       233 AGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNE-DMETNVPGVYAAGDLRPKELRQVVTAVADGAIAATSAERYVKEL  311 (555)
T ss_pred             ccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCC-ccccCCCCEEEceeccCCCcchheeHHhhHHHHHHHHHHHHHhh
Confidence            6    999999999999887667788899999998 78999999999999986455678899999999999999999754


Q ss_pred             cC
Q 016820          372 GS  373 (382)
Q Consensus       372 ~~  373 (382)
                      ..
T Consensus       312 ~~  313 (555)
T TIGR03143       312 KE  313 (555)
T ss_pred             hh
Confidence            43

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=100.00  E-value=2.2e-40  Score=323.22  Aligned_cols=304  Identities=34%  Similarity=0.551  Sum_probs=254.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|.+|+++|++|+|+++      ..||++.....++++++++ ...+.++.+++.+.+++++++
T Consensus       210 ~~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~------~~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv~  282 (517)
T PRK15317        210 DPYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE------RFGGQVLDTMGIENFISVP-ETEGPKLAAALEEHVKEYDVD  282 (517)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec------CCCCeeeccCcccccCCCC-CCCHHHHHHHHHHHHHHCCCE
Confidence            468999999999999999999999999999984      4788876555556666654 367889999999999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  214 (382)
                      ++.+ +|.+++.+++.+.+.+++ ..+.||+||+|||.+|+.+++||.+.+....++.+...+..  ...+++|+|||+|
T Consensus       283 i~~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~r~~~ipG~~~~~~~~v~~~~~~~~~--~~~gk~VvVVGgG  360 (517)
T PRK15317        283 IMNLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVAVIGGG  360 (517)
T ss_pred             EEcCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCcCCCCCCCHHHhcCceEEEeeccCch--hcCCCEEEEECCC
Confidence            9887 799999877777776644 46999999999999999999999777766666666555554  4578999999999


Q ss_pred             chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                      ++|+|+|..|...+.+|+++.+.+.+.....+.+.+.+..||++++++.+.++..+++  .+..+++.+..+++..++++
T Consensus       361 ~~g~e~A~~L~~~~~~Vtlv~~~~~l~~~~~l~~~l~~~~gI~i~~~~~v~~i~~~~g--~v~~v~~~~~~~g~~~~i~~  438 (517)
T PRK15317        361 NSGVEAAIDLAGIVKHVTVLEFAPELKADQVLQDKLRSLPNVTIITNAQTTEVTGDGD--KVTGLTYKDRTTGEEHHLEL  438 (517)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEECccccccHHHHHHHhcCCCcEEEECcEEEEEEcCCC--cEEEEEEEECCCCcEEEEEc
Confidence            9999999999999999999999988866666554444457999999999999987643  25567776544455568999


Q ss_pred             CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      |.+++++|.+|++.++...+.++++|++.+|+ +++|+.|||||+|||+..+.+++..|+.+|..||.++..+|....
T Consensus       439 D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~-~l~Ts~p~IyAaGDv~~~~~k~~~~A~~eG~~Aa~~~~~~l~~~~  515 (517)
T PRK15317        439 EGVFVQIGLVPNTEWLKGTVELNRRGEIIVDA-RGATSVPGVFAAGDCTTVPYKQIIIAMGEGAKAALSAFDYLIRNS  515 (517)
T ss_pred             CEEEEeECCccCchHHhhheeeCCCCcEEECc-CCCCCCCCEEECccccCCCCCEEEEhhhhHHHHHHHHHHHHhhcC
Confidence            99999999999999887346778889999998 678999999999999987678899999999999999999998654

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=100.00  E-value=2.6e-40  Score=322.37  Aligned_cols=302  Identities=33%  Similarity=0.572  Sum_probs=247.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...+||+|||||+||+++|..|++.|++|+|++.      ..||++.....++++++.+. ..+.++.+++.+.++++++
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~------~~GG~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~l~~~gv  282 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE------RIGGQVKDTVGIENLISVPY-TTGSQLAANLEEHIKQYPI  282 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEec------CCCCccccCcCcccccccCC-CCHHHHHHHHHHHHHHhCC
Confidence            3468999999999999999999999999999983      47777765445555555543 4678899999999999999


Q ss_pred             EEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG  213 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  213 (382)
                      +++.+ +|..++.+++.+.+.++ +..+.||++|+|+|++|+.+++||...+....++.+..++..  ...+++++|||+
T Consensus       283 ~i~~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~~~~~ipG~~~~~~~~v~~~~~~~~~--~~~~k~VvViGg  360 (515)
T TIGR03140       283 DLMENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARWRKLGVPGEKEYIGKGVAYCPHCDGP--FFKGKDVAVIGG  360 (515)
T ss_pred             eEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCcCCCCCCCHHHcCCCeEEEeeccChh--hcCCCEEEEECC
Confidence            99887 79999887766777664 446999999999999999999999766555555555544443  456899999999


Q ss_pred             CchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          214 GDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      |++|+|+|..|.+.+.+|+++.+.+.+.....+. +.+++ .||++++++.+.++..+++.  +..+.+.+..+++...+
T Consensus       361 G~~g~E~A~~L~~~g~~Vtli~~~~~l~~~~~l~-~~l~~~~gV~i~~~~~v~~i~~~~~~--v~~v~~~~~~~~~~~~i  437 (515)
T TIGR03140       361 GNSGIEAAIDLAGIVRHVTVLEFADELKADKVLQ-DKLKSLPNVDILTSAQTTEIVGDGDK--VTGIRYQDRNSGEEKQL  437 (515)
T ss_pred             cHHHHHHHHHHHhcCcEEEEEEeCCcCChhHHHH-HHHhcCCCCEEEECCeeEEEEcCCCE--EEEEEEEECCCCcEEEE
Confidence            9999999999999999999999988886655544 44554 69999999999999876432  55677765434555689


Q ss_pred             ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      ++|.+++++|.+|++.++...+.++++|++.||+ +++|++|+|||+|||+..+.+++..|+.+|..||.+|..+|..
T Consensus       438 ~~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~-~~~Ts~p~IyAaGDv~~~~~~~~~~A~~~G~~Aa~~i~~~~~~  514 (515)
T TIGR03140       438 DLDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDE-RGRTSVPGIFAAGDVTTVPYKQIIIAMGEGAKAALSAFDYLIR  514 (515)
T ss_pred             EcCEEEEEeCCcCCchHHhhhcccCCCCeEEECC-CCCCCCCCEEEcccccCCccceEEEEEccHHHHHHHHHHHHhh
Confidence            9999999999999999887346677889999999 7889999999999999765677889999999999999999864

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=100.00  E-value=4.4e-39  Score=295.32  Aligned_cols=296  Identities=20%  Similarity=0.266  Sum_probs=232.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCC-----CCCCChHHHHHHHHHH
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGF-----PQGILGGDLMDRCRNQ  129 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~  129 (382)
                      .+++|||||||++|+.+|..|.+.-  .+|+|||+.               ..+.+...     ...++..++...+++.
T Consensus         2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~---------------~~hl~~plL~eva~g~l~~~~i~~p~~~~   66 (405)
T COG1252           2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRR---------------DYHLFTPLLYEVATGTLSESEIAIPLRAL   66 (405)
T ss_pred             CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCC---------------CccccchhhhhhhcCCCChhheeccHHHH
Confidence            3578999999999999999999985  999999952               11112111     1234567777788888


Q ss_pred             HHHcC-cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc--ccCCCcceeeec--------cC
Q 016820          130 SLRFG-TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA--FWNRGISACAVC--------DG  198 (382)
Q Consensus       130 ~~~~g-i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~--~~~~~~~~~~~~--------~~  198 (382)
                      +++.+ ++++.++|++||.+++.+++.. ...+.||+||+|+|+.+..+.+||..+  +..+++.+....        +.
T Consensus        67 ~~~~~~v~~~~~~V~~ID~~~k~V~~~~-~~~i~YD~LVvalGs~~~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~  145 (405)
T COG1252          67 LRKSGNVQFVQGEVTDIDRDAKKVTLAD-LGEISYDYLVVALGSETNYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEK  145 (405)
T ss_pred             hcccCceEEEEEEEEEEcccCCEEEeCC-CccccccEEEEecCCcCCcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence            88555 9999999999999999776652 477999999999999999999999776  333444443211        11


Q ss_pred             CC-CCC--CCCcEEEEcCCchHHHHHHHHhhcC-------------CEEEEEEeCCCCcc-----hHHHHHHhccCCCcE
Q 016820          199 AA-PIF--RDKPLAVIGGGDSAMEEANFLTKYG-------------SKVYIIHRRDSFRA-----SKIMQNRALTNPKID  257 (382)
Q Consensus       199 ~~-~~~--~~~~v~VvG~G~~a~e~a~~l~~~g-------------~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~  257 (382)
                      .. ...  ...+++|+|+|++|+|+|.+|.++-             .+|+++++.+.+..     .....++.|++.||+
T Consensus       146 a~~~~~~~~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~ILp~~~~~l~~~a~~~L~~~GV~  225 (405)
T COG1252         146 ASQEEDDRALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRILPMFPPKLSKYAERALEKLGVE  225 (405)
T ss_pred             hhccccccceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhccCCCHHHHHHHHHHHHHCCCE
Confidence            10 011  2247999999999999999988652             28999999998743     122335789999999


Q ss_pred             EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCce
Q 016820          258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      +++++.|++++++.       |.+++   +++ ++++|.+||++|.+++...-. .+.+.|..|++.||+..+.+++|+|
T Consensus       226 v~l~~~Vt~v~~~~-------v~~~~---g~~-~I~~~tvvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~~L~~~~~~~I  294 (405)
T COG1252         226 VLLGTPVTEVTPDG-------VTLKD---GEE-EIPADTVVWAAGVRASPLLKDLSGLETDRRGRLVVNPTLQVPGHPDI  294 (405)
T ss_pred             EEcCCceEEECCCc-------EEEcc---CCe-eEecCEEEEcCCCcCChhhhhcChhhhccCCCEEeCCCcccCCCCCe
Confidence            99999999999998       77765   432 699999999999999877655 3677788999999998888899999


Q ss_pred             EEecccCCc-----hhhHHHHHHhhHHHHHHHHHHHHHHccCcccccc
Q 016820          337 FAAGDVQDK-----KYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE  379 (382)
Q Consensus       337 ya~GD~~~~-----~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~  379 (382)
                      ||+|||+..     .|+.+..|.+||..+|+||.+.+.++++.++++.
T Consensus       295 Fa~GD~A~~~~~~p~P~tAQ~A~Qqg~~~a~ni~~~l~g~~l~~f~y~  342 (405)
T COG1252         295 FAAGDCAAVIDPRPVPPTAQAAHQQGEYAAKNIKARLKGKPLKPFKYK  342 (405)
T ss_pred             EEEeccccCCCCCCCCChhHHHHHHHHHHHHHHHHHhcCCCCCCCccc
Confidence            999999953     2789999999999999999999999888777654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=100.00  E-value=1.8e-37  Score=291.81  Aligned_cols=290  Identities=26%  Similarity=0.349  Sum_probs=223.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C---CCCCC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F---PGFPQ---  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~---~~~~~---  115 (382)
                      ..+|++|||+|++|..+|.+++++|.+|.++|+    ....||+|....+.+.               .   .++..   
T Consensus         3 ~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~----~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~   78 (454)
T COG1249           3 KEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEK----GERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVP   78 (454)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCCEEEEee----cCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCC
Confidence            569999999999999999999999999999994    3378888876554321               0   11110   


Q ss_pred             CCChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          116 GILGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       116 ~~~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      .++..++.++.           +..+++.+++++.++...++  ++++.+..+ ..+++++++|+|||++|+.|++++.+
T Consensus        79 ~id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~--~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~  156 (454)
T COG1249          79 KIDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVD--PHTVEVTGEDKETITADNIIIATGSRPRIPPGPGID  156 (454)
T ss_pred             CcCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECC--CCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCC
Confidence            23444444443           33445669999999887777  445555432 36799999999999999999988877


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKID  257 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~  257 (382)
                      ...   +.........  ...+++++|||+|.+|+|+|..+.++|.+||++.+.+.+..      ++.+ .+.|++.|++
T Consensus       157 ~~~---~~~s~~~l~~--~~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp~~D~ei~~~~-~~~l~~~gv~  230 (454)
T COG1249         157 GAR---ILDSSDALFL--LELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILPGEDPEISKEL-TKQLEKGGVK  230 (454)
T ss_pred             CCe---EEechhhccc--ccCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCCcCCHHHHHHH-HHHHHhCCeE
Confidence            521   1111111111  34589999999999999999999999999999999999853      3333 4567778899


Q ss_pred             EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820          258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP  334 (382)
Q Consensus       258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~  334 (382)
                      ++.++.+++++..+++   ..+.+++   ++...+.+|.+++++|++||++-+.   .++.++++|+|.|| ..++|++|
T Consensus       231 i~~~~~v~~~~~~~~~---v~v~~~~---g~~~~~~ad~vLvAiGR~Pn~~~LgLe~~Gv~~~~rg~I~VD-~~~~Tnvp  303 (454)
T COG1249         231 ILLNTKVTAVEKKDDG---VLVTLED---GEGGTIEADAVLVAIGRKPNTDGLGLENAGVELDDRGFIKVD-DQMTTNVP  303 (454)
T ss_pred             EEccceEEEEEecCCe---EEEEEec---CCCCEEEeeEEEEccCCccCCCCCChhhcCceECCCCCEEeC-CccccCCC
Confidence            9999999999988764   1244444   3323789999999999999999554   68899999999999 58999999


Q ss_pred             ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ||||+|||.+.+ .+++.|..+|+.+|+||..
T Consensus       304 ~IyA~GDV~~~~-~Lah~A~~eg~iaa~~i~g  334 (454)
T COG1249         304 GIYAIGDVIGGP-MLAHVAMAEGRIAAENIAG  334 (454)
T ss_pred             CEEEeeccCCCc-ccHhHHHHHHHHHHHHHhC
Confidence            999999998754 4999999999999999997

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=100.00  E-value=2.9e-37  Score=296.65  Aligned_cols=285  Identities=21%  Similarity=0.253  Sum_probs=215.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------CCCCC-----CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------FPGFP-----QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~~~~~-----~~~  117 (382)
                      ++||+||||||+|+++|..++++|++|+|+|+     ..+||.|....+.+.               .+.+.     ..+
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-----~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   76 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-----PRVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARF   76 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-----CccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCc
Confidence            58999999999999999999999999999994     267888765433211               11111     012


Q ss_pred             ChH-----------HHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcccc
Q 016820          118 LGG-----------DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFW  186 (382)
Q Consensus       118 ~~~-----------~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~  186 (382)
                      ...           ++.+.+++.+++.|++++.+++..++++  .+.+..++..+.||+||+|||++|..|++||.+..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~--~v~v~~~g~~~~~d~lIiATGs~p~~p~i~G~~~~~  154 (446)
T TIGR01424        77 DWKKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPN--TVEVLQDGTTYTAKKILIAVGGRPQKPNLPGHELGI  154 (446)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEecCCeEEEcCEEEEecCCcCCCCCCCCcccee
Confidence            222           2344555566778999999998888754  455544566799999999999999999999865321


Q ss_pred             CCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEEcC
Q 016820          187 NRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~~~  261 (382)
                      ..     ......  ...+++++|||+|.+|+|+|..+.+.|.+|+++++.+.+..  .   .....+.+++.||+++++
T Consensus       155 ~~-----~~~~~l--~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~  227 (446)
T TIGR01424       155 TS-----NEAFHL--PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELILRGFDDDMRALLARNMEGRGIRIHPQ  227 (446)
T ss_pred             ch-----HHhhcc--cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCCcccCHHHHHHHHHHHHHCCCEEEeC
Confidence            10     000111  22478999999999999999999999999999999887532  1   122345677889999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCceEE
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~vya  338 (382)
                      +++.+++.++++     +.+..   .++..+++|.+++++|.+|++..+   ..++.++++|++.||+ +++|++|||||
T Consensus       228 ~~v~~i~~~~~~-----~~v~~---~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~IyA  298 (446)
T TIGR01424       228 TSLTSITKTDDG-----LKVTL---SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDE-YSRTSIPSIYA  298 (446)
T ss_pred             CEEEEEEEcCCe-----EEEEE---cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCC-CCccCCCCEEE
Confidence            999999876553     33332   123579999999999999999853   2567788899999998 78899999999


Q ss_pred             ecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          339 AGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +|||++. +..++.|++||+.+|.||..
T Consensus       299 ~GD~~~~-~~l~~~A~~~g~~~a~~i~~  325 (446)
T TIGR01424       299 VGDVTDR-INLTPVAIMEATCFANTEFG  325 (446)
T ss_pred             eeccCCC-ccchhHHHHHHHHHHHHHhc
Confidence            9999974 57899999999999999963

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK06370 mercuric reductase; Validated

Probab=100.00  E-value=1.1e-36  Score=294.27  Aligned_cols=289  Identities=23%  Similarity=0.289  Sum_probs=214.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC----C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP----Q  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~----~  115 (382)
                      .++||+||||||+|+++|..|++.|++|+|||+.     ..||.+....+.+                 ...+++    .
T Consensus         4 ~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-----~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (463)
T PRK06370          4 QRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-----LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPV   78 (463)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-----ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccC
Confidence            4589999999999999999999999999999952     5677766544321                 122322    1


Q ss_pred             CCChHHHHHH-----------HHHHHHHc-CcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          116 GILGGDLMDR-----------CRNQSLRF-GTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       116 ~~~~~~~~~~-----------~~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      .++..++.++           +...+++. |++++.++...++  ++.+.+  ++.++.||+||+|||++|+.|++||.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~--~~~v~v--~~~~~~~d~lViATGs~p~~p~i~G~~  154 (463)
T PRK06370         79 SVDFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFES--PNTVRV--GGETLRAKRIFINTGARAAIPPIPGLD  154 (463)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEcc--CCEEEE--CcEEEEeCEEEEcCCCCCCCCCCCCCC
Confidence            3344444433           33344555 8999988765443  344444  566799999999999999999999976


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhccCCCcEE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDV  258 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~~~gv~~  258 (382)
                      ....   .........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+...     .....+.+++.||++
T Consensus       155 ~~~~---~~~~~~~~~--~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~GV~i  229 (463)
T PRK06370        155 EVGY---LTNETIFSL--DELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPREDEDVAAAVREILEREGIDV  229 (463)
T ss_pred             cCce---EcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcccCHHHHHHHHHHHHhCCCEE
Confidence            5211   111111111  234789999999999999999999999999999998876321     223345677899999


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCc
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      ++++++.+++.++++.   .+.+..  .+++..+++|.+++++|.+|++..+  . .++.++++|++.||+ .++|+.||
T Consensus       230 ~~~~~V~~i~~~~~~~---~v~~~~--~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~l~t~~~~  303 (463)
T PRK06370        230 RLNAECIRVERDGDGI---AVGLDC--NGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDD-QLRTTNPG  303 (463)
T ss_pred             EeCCEEEEEEEcCCEE---EEEEEe--CCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECc-CCcCCCCC
Confidence            9999999998876531   233332  1234679999999999999999833  2 467788899999998 68899999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+|||++. ++..+.|..||+.+|.||..
T Consensus       304 IyAiGD~~~~-~~~~~~A~~~g~~aa~ni~~  333 (463)
T PRK06370        304 IYAAGDCNGR-GAFTHTAYNDARIVAANLLD  333 (463)
T ss_pred             EEEeeecCCC-cccHHHHHHHHHHHHHHHhC
Confidence            9999999874 67889999999999999864

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=100.00  E-value=1.3e-36  Score=291.92  Aligned_cols=284  Identities=21%  Similarity=0.217  Sum_probs=210.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC----CC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP----QG  116 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~----~~  116 (382)
                      ++||+||||||+|+++|..|+++|.+|+|||+.     .+||.|....+.+..                 .+++    ..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-----~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~   76 (450)
T TIGR01421         2 HYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-----KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENT   76 (450)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-----ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCc
Confidence            589999999999999999999999999999942     578877654333210                 0111    11


Q ss_pred             CChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC-CCCCCcc
Q 016820          117 ILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL-QFPGSDA  184 (382)
Q Consensus       117 ~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~-~~~g~~~  184 (382)
                      ....++.+           .+...+++.|++++.++....+  ++.+  ..++..+.||+||+|||++|+.| ++||.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v--~v~~~~~~~d~vIiAtGs~p~~p~~i~g~~~  152 (450)
T TIGR01421        77 FNWPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTK--DGTV--EVNGRDYTAPHILIATGGKPSFPENIPGAEL  152 (450)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEE--EECCEEEEeCEEEEecCCCCCCCCCCCCCce
Confidence            23333332           2444556679999999765443  3333  33566799999999999999988 8888653


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~  259 (382)
                      ...     +......  ...+++++|||+|.+|+|+|..|.+.|++||++++.+.+..  .   ....++.|++.||+++
T Consensus       153 ~~~-----~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~gI~i~  225 (450)
T TIGR01421       153 GTD-----SDGFFAL--EELPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVLRSFDSMISETITEEYEKEGINVH  225 (450)
T ss_pred             eEc-----HHHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCcccCHHHHHHHHHHHHHcCCEEE
Confidence            211     1101111  22468999999999999999999999999999999886531  1   2223456778899999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      +++.+++++.+.++.  ..+++++   + ...+++|.+++++|++|++..+  . .++.++++|++.||+ +++|+.|||
T Consensus       226 ~~~~v~~i~~~~~~~--~~v~~~~---g-~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~-~~~T~~p~I  298 (450)
T TIGR01421       226 KLSKPVKVEKTVEGK--LVIHFED---G-KSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDE-YQNTNVPGI  298 (450)
T ss_pred             cCCEEEEEEEeCCce--EEEEECC---C-cEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCC-CCcCCCCCE
Confidence            999999998765431  1233332   2 2569999999999999999864  2 577888899999998 689999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ||+|||++. +..++.|..+|+.+|.+|.
T Consensus       299 yAiGD~~~~-~~~~~~A~~~g~~aa~~i~  326 (450)
T TIGR01421       299 YALGDVVGK-VELTPVAIAAGRKLSERLF  326 (450)
T ss_pred             EEEEecCCC-cccHHHHHHHHHHHHHHHh
Confidence            999999974 5688899999999999986

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=100.00  E-value=7.7e-37  Score=295.73  Aligned_cols=288  Identities=24%  Similarity=0.277  Sum_probs=214.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc------------------cCC--CCCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE------------------NFP--GFPQ  115 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~~--~~~~  115 (382)
                      +..+||+|||||++|+++|..|++.|.+|+|||    +....||.+....+.+                  .+.  ..+.
T Consensus         3 ~~~yDvvVIGaGpaG~~aA~~la~~G~~v~liE----~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~   78 (461)
T PRK05249          3 MYDYDLVVIGSGPAGEGAAMQAAKLGKRVAVIE----RYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKL   78 (461)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhCCCEEEEEe----ccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcC
Confidence            356899999999999999999999999999999    4445677765433211                  010  1112


Q ss_pred             CCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCC
Q 016820          116 GILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       116 ~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      .++..++.++           +.+.+.+.+++++.+++..++.  +.+.+...+   ..++||+||+|||++|..|++++
T Consensus        79 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviATGs~p~~p~~~~  156 (461)
T PRK05249         79 RITFADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDP--HTVEVECPDGEVETLTADKIVIATGSRPYRPPDVD  156 (461)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCCCC
Confidence            2344444433           3445567799999998877764  455665433   26999999999999998887666


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCC
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPK  255 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~g  255 (382)
                      ...   ..+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..      ...+ .+.+++.|
T Consensus       157 ~~~---~~v~~~~~~~~~--~~~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l-~~~l~~~g  230 (461)
T PRK05249        157 FDH---PRIYDSDSILSL--DHLPRSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLSFLDDEISDAL-SYHLRDSG  230 (461)
T ss_pred             CCC---CeEEcHHHhhch--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCCcCCHHHHHHH-HHHHHHcC
Confidence            432   222222222222  23579999999999999999999999999999999887632      2233 35577889


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |+++.++.+++++.++++     +.+..   .++..+++|.+++|+|++|++..+.   .++.++++|++.||+ +++|+
T Consensus       231 I~v~~~~~v~~i~~~~~~-----~~v~~---~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~  301 (461)
T PRK05249        231 VTIRHNEEVEKVEGGDDG-----VIVHL---KSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNE-NYQTA  301 (461)
T ss_pred             CEEEECCEEEEEEEeCCe-----EEEEE---CCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCC-CcccC
Confidence            999999999999876543     33332   1224699999999999999998542   567788899999998 78899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      .|||||+|||++. +..+..|+.+|+.+|.+|.
T Consensus       302 ~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~  333 (461)
T PRK05249        302 VPHIYAVGDVIGF-PSLASASMDQGRIAAQHAV  333 (461)
T ss_pred             CCCEEEeeecCCC-cccHhHHHHHHHHHHHHHc
Confidence            9999999999973 5789999999999999997

>PRK06116 glutathione reductase; Validated

Probab=100.00  E-value=1.6e-36  Score=292.33  Aligned_cols=285  Identities=25%  Similarity=0.274  Sum_probs=211.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc------------------CCCCC---C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN------------------FPGFP---Q  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~------------------~~~~~---~  115 (382)
                      ..+||+||||||+|+++|..|+++|++|+|||+    . ..||++....+.+.                  ..++.   .
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~----~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   77 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAMYGAKVALIEA----K-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTEN   77 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEec----c-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCC
Confidence            358999999999999999999999999999994    2 57777644322111                  00111   1


Q ss_pred             CCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          116 GILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       116 ~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      ......+.++           +.+.+.+.|++++.+++..++.  +.+.+  ++.++.||+||+|||++|+.|++||.+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~--~~v~~--~g~~~~~d~lViATGs~p~~p~i~g~~~  153 (450)
T PRK06116         78 KFDWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDA--HTVEV--NGERYTADHILIATGGRPSIPDIPGAEY  153 (450)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccC--CEEEE--CCEEEEeCEEEEecCCCCCCCCCCCcce
Confidence            2233333332           3344556799999998887763  34444  6677999999999999999999998653


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~  259 (382)
                      .+..     ......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..  .   .....+.+++.||+++
T Consensus       154 ~~~~-----~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~L~~~GV~i~  226 (450)
T PRK06116        154 GITS-----DGFFAL--EELPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRGDAPLRGFDPDIRETLVEEMEKKGIRLH  226 (450)
T ss_pred             eEch-----hHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCccccCHHHHHHHHHHHHHCCcEEE
Confidence            2111     100111  22468999999999999999999999999999999876531  1   1222456778999999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      .++++.+++.++++.    +.+..   .++.++++|.+++++|.+|+...+.   .++.++++|++.||+ +++|++|||
T Consensus       227 ~~~~V~~i~~~~~g~----~~v~~---~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~I  298 (450)
T PRK06116        227 TNAVPKAVEKNADGS----LTLTL---EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDE-YQNTNVPGI  298 (450)
T ss_pred             CCCEEEEEEEcCCce----EEEEE---cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCC-CCCcCCCCE
Confidence            999999998865542    22332   1225799999999999999998532   567888899999998 788999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ||+|||++. +..+..|+.||+.+|++|..
T Consensus       299 yA~GD~~~~-~~~~~~A~~~g~~aa~~i~g  327 (450)
T PRK06116        299 YAVGDVTGR-VELTPVAIAAGRRLSERLFN  327 (450)
T ss_pred             EEEeecCCC-cCcHHHHHHHHHHHHHHHhC
Confidence            999999864 57889999999999999963

>PLN02507 glutathione reductase

Probab=100.00  E-value=1.6e-36  Score=293.96  Aligned_cols=291  Identities=19%  Similarity=0.221  Sum_probs=215.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc-----CCCCCCCcceecCCCccc---------------C--CCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM-----ANDIAPGGQLTTTSDVEN---------------F--PGF  113 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~-----~~~~~~gg~~~~~~~~~~---------------~--~~~  113 (382)
                      ...+||+|||||++|+.+|..++++|.+|+|||+..     .....+||+|....+.+.               .  .++
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G~  102 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYGW  102 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcCc
Confidence            456899999999999999999999999999999521     112467888765332210               0  011


Q ss_pred             C----CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC-e--EEEcCEEEEccCCCCc
Q 016820          114 P----QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-K--SVLADTVIVATGAVAK  175 (382)
Q Consensus       114 ~----~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~-~--~~~~d~lvlA~G~~~~  175 (382)
                      .    ..+....+.++           ++..+...+++++.+++..+++.  .+.+...+ .  ++.||+||+|||++|.
T Consensus       103 ~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~--~v~V~~~~g~~~~~~~d~LIIATGs~p~  180 (499)
T PLN02507        103 EINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPN--EVEVTQLDGTKLRYTAKHILIATGSRAQ  180 (499)
T ss_pred             ccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCC--EEEEEeCCCcEEEEEcCEEEEecCCCCC
Confidence            1    12344444433           23344557999999999888754  45555433 2  4899999999999999


Q ss_pred             CCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHh
Q 016820          176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRA  250 (382)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~  250 (382)
                      .|++||.+....     .......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..  .   .....+.
T Consensus       181 ~p~ipG~~~~~~-----~~~~~~l--~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~~l~~~d~~~~~~l~~~  253 (499)
T PLN02507        181 RPNIPGKELAIT-----SDEALSL--EELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRKELPLRGFDDEMRAVVARN  253 (499)
T ss_pred             CCCCCCccceec-----hHHhhhh--hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEecCCcCcccCHHHHHHHHHH
Confidence            999998653211     1111111  22368999999999999999999999999999999876421  1   2222356


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPG  327 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~  327 (382)
                      |++.||+++.++++++++.++++     +.+..   +++.++++|.+++++|++|++..+.   .++.++++|++.||+ 
T Consensus       254 l~~~GI~i~~~~~V~~i~~~~~~-----~~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~-  324 (499)
T PLN02507        254 LEGRGINLHPRTNLTQLTKTEGG-----IKVIT---DHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDE-  324 (499)
T ss_pred             HHhCCCEEEeCCEEEEEEEeCCe-----EEEEE---CCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCC-
Confidence            77889999999999999876543     33433   2335799999999999999998642   467788899999998 


Q ss_pred             CCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          328 TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       328 ~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      +++|+.|||||+|||++. +..++.|+.||+.+|.||.
T Consensus       325 ~~~Ts~p~IyAiGDv~~~-~~l~~~A~~qg~~aa~ni~  361 (499)
T PLN02507        325 YSRTNIPSIWAIGDVTNR-INLTPVALMEGTCFAKTVF  361 (499)
T ss_pred             CCcCCCCCEEEeeEcCCC-CccHHHHHHHHHHHHHHHc
Confidence            778999999999999974 5688999999999999986

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=100.00  E-value=5e-37  Score=292.97  Aligned_cols=299  Identities=20%  Similarity=0.197  Sum_probs=219.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .+++|||||||+||+.+|..|.+.+++|+|||++....        +...   ++... ......++...++..+.+.++
T Consensus         9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~~~~~~--------~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~   77 (424)
T PTZ00318          9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISPRNHML--------FTPL---LPQTTTGTLEFRSICEPVRPALAKLPN   77 (424)
T ss_pred             CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcCCCCcc--------hhhh---HHHhcccCCChHHhHHHHHHHhccCCe
Confidence            35789999999999999999987789999999531110        0000   01111 122345666667777778899


Q ss_pred             EEEEeeEEEEEecCCcEEEEE---------CCeEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeeeccC------
Q 016820          136 QIFTETVSKVDFKSRPFKVFT---------DSKSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAVCDG------  198 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~---------~~~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~~~~------  198 (382)
                      +++.++|++||++++.+.+..         ++.++.||+||+|||+.|..+.+||..+.  ....+..+.....      
T Consensus        78 ~~i~~~V~~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~~~~~ipG~~e~~~~~~~~~~a~~~~~~l~~~~  157 (424)
T PTZ00318         78 RYLRAVVYDVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARPNTFNIPGVEERAFFLKEVNHARGIRKRIVQCI  157 (424)
T ss_pred             EEEEEEEEEEEcCCCEEEEecccccccccCCceEecCCEEEECCCcccCCCCCCCHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999998877731         34469999999999999999999997652  2222222111000      


Q ss_pred             --C-C------CCCCCCcEEEEcCCchHHHHHHHHhh--------------cCCEEEEEEeCCCCcc-----hHHHHHHh
Q 016820          199 --A-A------PIFRDKPLAVIGGGDSAMEEANFLTK--------------YGSKVYIIHRRDSFRA-----SKIMQNRA  250 (382)
Q Consensus       199 --~-~------~~~~~~~v~VvG~G~~a~e~a~~l~~--------------~g~~v~~~~~~~~~~~-----~~~~~~~~  250 (382)
                        . .      .....++++|||+|.+|+|+|..|.+              .+.+|+++++.+.+..     .....++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~~~~~~~~~~~~~~  237 (424)
T PTZ00318        158 ERASLPTTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLGSFDQALRKYGQRR  237 (424)
T ss_pred             HHhcCCCCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccccCCHHHHHHHHHH
Confidence              0 0      01123589999999999999999875              3689999999876521     22333567


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCc
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH  330 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~  330 (382)
                      |++.||++++++++.++.++.       +.+++   +  .++++|.++|++|.+|+......++..+++|++.||+.++.
T Consensus       238 L~~~gV~v~~~~~v~~v~~~~-------v~~~~---g--~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~l~~  305 (424)
T PTZ00318        238 LRRLGVDIRTKTAVKEVLDKE-------VVLKD---G--EVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDHLRV  305 (424)
T ss_pred             HHHCCCEEEeCCeEEEEeCCE-------EEECC---C--CEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCCccc
Confidence            888999999999999997643       66643   4  57999999999999998533335677788899999995444


Q ss_pred             CCCCceEEecccCCc----hhhHHHHHHhhHHHHHHHHHHHHHHcc-Cccccc
Q 016820          331 TSVPGVFAAGDVQDK----KYRQAVTAAGTGCMAALEAEHYLQEIG-SQEDKS  378 (382)
Q Consensus       331 t~~~~vya~GD~~~~----~~~~~~~a~~~g~~aa~~i~~~l~~~~-~~~~~~  378 (382)
                      +++|||||+|||+..    .++.+..|++||..+|+||...+.+++ ..++.+
T Consensus       306 ~~~~~IfAiGD~a~~~~~~~~~~~~~A~~qg~~~A~ni~~~l~g~~~~~~~~~  358 (424)
T PTZ00318        306 KPIPNVFALGDCAANEERPLPTLAQVASQQGVYLAKEFNNELKGKPMSKPFVY  358 (424)
T ss_pred             CCCCCEEEEeccccCCCCCCCCchHHHHHHHHHHHHHHHHHhcCCCCCCCCee
Confidence            799999999999963    367889999999999999999999875 444443

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=4.4e-36  Score=290.37  Aligned_cols=290  Identities=24%  Similarity=0.287  Sum_probs=212.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------CC--CC---CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------FP--GF---PQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~~--~~---~~~  116 (382)
                      ..+||+||||||+|+++|..|++.|.+|+|||+    .. .||.|....+.+.               ..  ++   ...
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~----~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~   77 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEK----EK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVG   77 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEec----cc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCc
Confidence            458999999999999999999999999999995    32 7887654433211               00  01   112


Q ss_pred             CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ....++.++           +...+++.|++++.++++.++..  .+.+..  ++..+.||+||+|||++|..|  ||.+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~--~~~v~~~~~~~~~~~d~lViAtGs~p~~~--pg~~  153 (462)
T PRK06416         78 IDFKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPN--TVRVMTEDGEQTYTAKNIILATGSRPREL--PGIE  153 (462)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCC--EEEEecCCCcEEEEeCEEEEeCCCCCCCC--CCCC
Confidence            344555555           34455677999999988877643  455542  235699999999999998754  4443


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV  258 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~  258 (382)
                      . ....++.+......  ...+++++|||+|.+|+|+|..|.+.|.+||++++.+.+..     .....++.+++.||++
T Consensus       154 ~-~~~~v~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~i  230 (462)
T PRK06416        154 I-DGRVIWTSDEALNL--DEVPKSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILPGEDKEISKLAERALKKRGIKI  230 (462)
T ss_pred             C-CCCeEEcchHhhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCCcCCHHHHHHHHHHHHHcCCEE
Confidence            2 11112222222222  23468999999999999999999999999999999887632     1223345677889999


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCc
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      +.++++.+++.++++     +.+.....++..++++|.+++++|.+|+..++   ..++.++ +|++.||+ .++|+.|+
T Consensus       231 ~~~~~V~~i~~~~~~-----v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~-~~~t~~~~  303 (462)
T PRK06416        231 KTGAKAKKVEQTDDG-----VTVTLEDGGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDE-QLRTNVPN  303 (462)
T ss_pred             EeCCEEEEEEEeCCE-----EEEEEEeCCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECC-CCccCCCC
Confidence            999999999887653     33332111333579999999999999999875   2467777 89999998 67899999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+|||+.. ++.+..|+.||+.+|.||..
T Consensus       304 VyAiGD~~~~-~~~~~~A~~~g~~aa~ni~~  333 (462)
T PRK06416        304 IYAIGDIVGG-PMLAHKASAEGIIAAEAIAG  333 (462)
T ss_pred             EEEeeecCCC-cchHHHHHHHHHHHHHHHcC
Confidence            9999999863 67899999999999999974

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=4.2e-36  Score=288.68  Aligned_cols=288  Identities=20%  Similarity=0.252  Sum_probs=211.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCC---CCCCCCChH-------HHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFP---GFPQGILGG-------DLMDRCR  127 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~---~~~~~~~~~-------~~~~~~~  127 (382)
                      .+||+|||||++|+++|..|+++|.+|+|||+   .....||++....+.....   .........       ++.++++
T Consensus         3 ~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~---~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~   79 (441)
T PRK08010          3 KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQ---SNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLR   79 (441)
T ss_pred             cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcC---CCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999995   2224688876543322110   000011221       1222222


Q ss_pred             -----HHHHHcCcEEEEeeEEEEEecCCcEEEEECC-e-EEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCC
Q 016820          128 -----NQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-K-SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAA  200 (382)
Q Consensus       128 -----~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~-~-~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  200 (382)
                           +..+..+++++.+++..++.  +.+.+.+.+ . ++.||+||+|||++|..|++||.+...  .+..+...... 
T Consensus        80 ~~~~~~~~~~~gv~~~~g~~~~i~~--~~~~v~~~~g~~~~~~d~lviATGs~p~~p~i~G~~~~~--~v~~~~~~~~~-  154 (441)
T PRK08010         80 NKNFHNLADMPNIDVIDGQAEFINN--HSLRVHRPEGNLEIHGEKIFINTGAQTVVPPIPGITTTP--GVYDSTGLLNL-  154 (441)
T ss_pred             HhHHHHHhhcCCcEEEEEEEEEecC--CEEEEEeCCCeEEEEeCEEEEcCCCcCCCCCCCCccCCC--CEEChhHhhcc-
Confidence                 12223489999998888874  455665533 3 599999999999999999999975421  12222222222 


Q ss_pred             CCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEEcCceeEEEEecCCcee
Q 016820          201 PIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKV  275 (382)
Q Consensus       201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~  275 (382)
                       ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..  .   .....+.+++.||+++.++.+.+++.++++  
T Consensus       155 -~~~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~--  231 (441)
T PRK08010        155 -KELPGHLGILGGGYIGVEFASMFANFGSKVTILEAASLFLPREDRDIADNIATILRDQGVDIILNAHVERISHHENQ--  231 (441)
T ss_pred             -cccCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCCcCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE--
Confidence             23568999999999999999999999999999999876632  1   122245678899999999999999876542  


Q ss_pred             eeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHH
Q 016820          276 LGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT  352 (382)
Q Consensus       276 ~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~  352 (382)
                         +.+..   ++ .++++|.+++++|.+|++..+.   .++.++++|++.||+ +++|+.|||||+|||++. +...+.
T Consensus       232 ---v~v~~---~~-g~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~~IyA~GD~~~~-~~~~~~  302 (441)
T PRK08010        232 ---VQVHS---EH-AQLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDK-YLHTTADNIWAMGDVTGG-LQFTYI  302 (441)
T ss_pred             ---EEEEE---cC-CeEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECC-CcccCCCCEEEeeecCCC-ccchhH
Confidence               44443   22 2489999999999999997642   467788899999998 689999999999999974 588899


Q ss_pred             HHhhHHHHHHHHH
Q 016820          353 AAGTGCMAALEAE  365 (382)
Q Consensus       353 a~~~g~~aa~~i~  365 (382)
                      |..+|+.++.+|.
T Consensus       303 a~~~~~~~~~~~~  315 (441)
T PRK08010        303 SLDDYRIVRDELL  315 (441)
T ss_pred             HHHHHHHHHHHHc
Confidence            9999999999985

>TIGR02053 MerA mercuric reductase

Probab=100.00  E-value=9e-36  Score=288.16  Aligned_cols=289  Identities=27%  Similarity=0.321  Sum_probs=210.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCC--CCCCCCh
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPG--FPQGILG  119 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~--~~~~~~~  119 (382)
                      +||+||||||+|+++|..|+++|.+|+|||+    . ..||.|....+.+                 .+..  ....++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~----~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~   75 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVER----G-PLGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDF   75 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeC----C-cccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCH
Confidence            5999999999999999999999999999994    2 3777765432211                 0000  0011222


Q ss_pred             H-------HHHHH-----HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccC
Q 016820          120 G-------DLMDR-----CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWN  187 (382)
Q Consensus       120 ~-------~~~~~-----~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~  187 (382)
                      .       ++...     +...+++.+++++.+++..++  ...+.+..+...+.||+||+|||++|+.|++||.+... 
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~--~~~v~v~~g~~~~~~~~lIiATGs~p~~p~i~G~~~~~-  152 (463)
T TIGR02053        76 GELLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKD--PKTVKVDLGREVRGAKRFLIATGARPAIPPIPGLKEAG-  152 (463)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEcc--CCEEEEcCCeEEEEeCEEEEcCCCCCCCCCCCCcccCc-
Confidence            2       22222     234456779999999877654  34444432123589999999999999999999976531 


Q ss_pred             CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCc
Q 016820          188 RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNS  262 (382)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~  262 (382)
                        +..+......  ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+..     .....++.+++.||++++++
T Consensus       153 --~~~~~~~~~~--~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~l~~~gV~i~~~~  228 (463)
T TIGR02053       153 --YLTSEEALAL--DRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLPREEPEISAAVEEALAEEGIEVVTSA  228 (463)
T ss_pred             --eECchhhhCc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCCccCHHHHHHHHHHHHHcCCEEEcCc
Confidence              1111111111  22368999999999999999999999999999999876532     12233466778899999999


Q ss_pred             eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceEEe
Q 016820          263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vya~  339 (382)
                      ++.+++.++++   ..+.+..  .+++.++++|.+++++|++|+...+  . .++.++++|++.||+ +++|+.|||||+
T Consensus       229 ~V~~i~~~~~~---~~v~~~~--~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~Ts~~~VyAi  302 (463)
T TIGR02053       229 QVKAVSVRGGG---KIITVEK--PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDE-TLRTSNPGIYAA  302 (463)
T ss_pred             EEEEEEEcCCE---EEEEEEe--CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECC-CccCCCCCEEEe
Confidence            99999876543   1233332  1234679999999999999999833  2 567788899999998 789999999999


Q ss_pred             cccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          340 GDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       340 GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||++. +..++.|..||+.+|.||..
T Consensus       303 GD~~~~-~~~~~~A~~~g~~aa~ni~~  328 (463)
T TIGR02053       303 GDVTGG-LQLEYVAAKEGVVAAENALG  328 (463)
T ss_pred             eecCCC-cccHhHHHHHHHHHHHHhcC
Confidence            999974 67899999999999999974

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.3e-35  Score=286.50  Aligned_cols=291  Identities=20%  Similarity=0.253  Sum_probs=209.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C--CCC---CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F--PGF---PQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~--~~~---~~~  116 (382)
                      .++||+|||||++|+.+|..|+++|.+|+|||+    ....||+|....+.+.               .  .++   ...
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~----~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~   78 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAADLGLETVCVER----YSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPK   78 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCcEEEEec----CCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            458999999999999999999999999999994    3356777654332111               0  011   012


Q ss_pred             CChHHHHHHHH-----------HHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC-CCCCC
Q 016820          117 ILGGDLMDRCR-----------NQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK-LQFPG  181 (382)
Q Consensus       117 ~~~~~~~~~~~-----------~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~-~~~~g  181 (382)
                      ++...+.++..           ..+++.|++++.+++..++  .+.+.+..++   .++.||+||+|||++|.. |.+++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~  156 (471)
T PRK06467         79 IDIDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTG--GNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH  156 (471)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC
Confidence            23344433332           3345669999999877665  4556665433   369999999999999974 44555


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCc
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKI  256 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv  256 (382)
                      ....    +.........  ...+++++|||+|.+|+|+|..|.+.|.+||++.+.+.+..  .   .....+.+++. +
T Consensus       157 ~~~~----v~~~~~~~~~--~~~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~~~d~~~~~~~~~~l~~~-v  229 (471)
T PRK06467        157 DDPR----IWDSTDALEL--KEVPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIPAADKDIVKVFTKRIKKQ-F  229 (471)
T ss_pred             CCCc----EEChHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCCcCCHHHHHHHHHHHhhc-e
Confidence            3321    1111111111  23468999999999999999999999999999999887632  1   12223456666 9


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSV  333 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~  333 (382)
                      +++.++.+.+++.++++   ..+.+.+. .++..++++|.+++++|++|++.++.   .++.++++|++.||+ +++|+.
T Consensus       230 ~i~~~~~v~~i~~~~~~---~~v~~~~~-~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~-~~~t~~  304 (471)
T PRK06467        230 NIMLETKVTAVEAKEDG---IYVTMEGK-KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDK-QCRTNV  304 (471)
T ss_pred             EEEcCCEEEEEEEcCCE---EEEEEEeC-CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCC-CcccCC
Confidence            99999999999876543   12333321 12235799999999999999998643   568888999999998 788999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||||+|||++. +..++.|..+|+.+|.+|..
T Consensus       305 p~VyAiGDv~~~-~~la~~A~~eG~~aa~~i~g  336 (471)
T PRK06467        305 PHIFAIGDIVGQ-PMLAHKGVHEGHVAAEVIAG  336 (471)
T ss_pred             CCEEEehhhcCC-cccHHHHHHHHHHHHHHHcC
Confidence            999999999864 56899999999999999863

>PLN02546 glutathione reductase

Probab=100.00  E-value=8.3e-36  Score=290.16  Aligned_cols=290  Identities=20%  Similarity=0.196  Sum_probs=215.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc-----CCCCCCCcceecCCCccc---------------C--CCC-
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM-----ANDIAPGGQLTTTSDVEN---------------F--PGF-  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~-----~~~~~~gg~~~~~~~~~~---------------~--~~~-  113 (382)
                      .++||+|||+|++|+.+|..++++|.+|+|||+..     .....+||+|....+.+.               .  .++ 
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~~  157 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGWK  157 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCcc
Confidence            46899999999999999999999999999999421     012357887765443210               0  011 


Q ss_pred             ---CCCCChHH-----------HHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820          114 ---PQGILGGD-----------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       114 ---~~~~~~~~-----------~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                         ...+++..           +.+++.+.+++.|++++.++++.+++.  .  +..++..+.||+||+|||++|..|++
T Consensus       158 ~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~--~--V~v~G~~~~~D~LVIATGs~p~~P~I  233 (558)
T PLN02546        158 YETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPH--T--VDVDGKLYTARNILIAVGGRPFIPDI  233 (558)
T ss_pred             cCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCC--E--EEECCEEEECCEEEEeCCCCCCCCCC
Confidence               01223322           333445556677999999998888753  3  33466779999999999999999999


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNP  254 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~  254 (382)
                      ||.+..+     .+......  ...+++++|||+|.+|+|+|..|.+++.+|+++.+.+.+..  .   .....+.|++.
T Consensus       234 pG~~~v~-----~~~~~l~~--~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~~~d~~~~~~l~~~L~~~  306 (558)
T PLN02546        234 PGIEHAI-----DSDAALDL--PSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLRGFDEEVRDFVAEQMSLR  306 (558)
T ss_pred             CChhhcc-----CHHHHHhc--cccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeccccccccCHHHHHHHHHHHHHC
Confidence            9875421     11111112  23578999999999999999999999999999999876521  1   12234567789


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t  331 (382)
                      ||+++.++.+.++...+++.    +.+..   +++....+|.+++++|++|+...+  + .++.++++|+|.||+ +++|
T Consensus       307 GV~i~~~~~v~~i~~~~~g~----v~v~~---~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~-~l~T  378 (558)
T PLN02546        307 GIEFHTEESPQAIIKSADGS----LSLKT---NKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDE-YSRT  378 (558)
T ss_pred             CcEEEeCCEEEEEEEcCCCE----EEEEE---CCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECC-Ccee
Confidence            99999999999998754442    33433   233445689999999999999864  2 477788899999998 7889


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ++|||||+|||++. +..++.|+.+|+.+|.+|..
T Consensus       379 s~p~IYAaGDv~~~-~~l~~~A~~~g~~~a~~i~g  412 (558)
T PLN02546        379 SVPSIWAVGDVTDR-INLTPVALMEGGALAKTLFG  412 (558)
T ss_pred             CCCCEEEeeccCCC-cccHHHHHHHHHHHHHHHcC
Confidence            99999999999974 57888999999999999863

>PRK12831 putative oxidoreductase; Provisional

Probab=100.00  E-value=4.4e-36  Score=288.30  Aligned_cols=295  Identities=26%  Similarity=0.327  Sum_probs=215.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+||||||+|+++|..|+++|++|+|+|    ....+||.+.+.     +|.+  ....+++..+..+.++++|++
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e----~~~~~GG~l~~g-----ip~~--~l~~~~~~~~~~~~~~~~gv~  207 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFE----ALHEPGGVLVYG-----IPEF--RLPKETVVKKEIENIKKLGVK  207 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEe----cCCCCCCeeeec-----CCCc--cCCccHHHHHHHHHHHHcCCE
Confidence            56899999999999999999999999999999    445677777531     2222  122344777777788889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcc-----eeeeccCC-CCCCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGIS-----ACAVCDGA-APIFRDK  206 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~-----~~~~~~~~-~~~~~~~  206 (382)
                      ++.++...     ..+.+......+.||+||+|||+ .|+.+++||.+.-   ......     ...+.... .....++
T Consensus       208 i~~~~~v~-----~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk  282 (464)
T PRK12831        208 IETNVVVG-----KTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGK  282 (464)
T ss_pred             EEcCCEEC-----CcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCC
Confidence            98886321     11111100123569999999998 6998999997641   000000     00010000 0134689


Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      +|+|||+|++|+|+|..+.++|.+|+++++....  +...... +.+.++||+++++..+.++..+++|+ +.++++...
T Consensus       283 ~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~-~~a~~eGV~i~~~~~~~~i~~~~~g~-v~~v~~~~~  360 (464)
T PRK12831        283 KVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEV-HHAKEEGVIFDLLTNPVEILGDENGW-VKGMKCIKM  360 (464)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-HHHHHcCCEEEecccceEEEecCCCe-EEEEEEEEE
Confidence            9999999999999999999999999999987643  2222222 23556899999999999998765543 555555321


Q ss_pred             c---------------CCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchh
Q 016820          285 V---------------TGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY  347 (382)
Q Consensus       285 ~---------------~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~  347 (382)
                      .               +++...+++|.|++++|..|+..++.  .++.++++|++.+|+.+++|+.|+|||+|||... +
T Consensus       361 ~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~Ts~pgVfAaGD~~~g-~  439 (464)
T PRK12831        361 ELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEETGLTSKEGVFAGGDAVTG-A  439 (464)
T ss_pred             EecCcCCCCCccceecCCceEEEECCEEEECCCCCCChhhhcccCCceECCCCcEEECCCCCccCCCCEEEeCCCCCC-c
Confidence            1               23345799999999999999998775  3677888899999985599999999999999864 5


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHH
Q 016820          348 RQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       348 ~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .++..|+.+|+.||.+|.++|.+
T Consensus       440 ~~v~~Ai~~G~~AA~~I~~~L~~  462 (464)
T PRK12831        440 ATVILAMGAGKKAAKAIDEYLSK  462 (464)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcC
Confidence            68899999999999999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=100.00  E-value=2.1e-35  Score=285.46  Aligned_cols=288  Identities=22%  Similarity=0.278  Sum_probs=210.9

Q ss_pred             cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cCC---CC--
Q 016820           54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NFP---GF--  113 (382)
Q Consensus        54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~~---~~--  113 (382)
                      +....+||+|||||++|+++|..|+++|.+|+|||+    . .+||+|....+.+               ..+   ++  
T Consensus         2 ~~~~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~----~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~   76 (468)
T PRK14694          2 MSDNNLHIAVIGSGGSAMAAALKATERGARVTLIER----G-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSA   76 (468)
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEc----c-ccccceecCCccccHHHHHHHHHHHHHhhccccCCccc
Confidence            455779999999999999999999999999999995    2 5777776543210               111   11  


Q ss_pred             -CCCCChHHHHHHHHHH------------HHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC
Q 016820          114 -PQGILGGDLMDRCRNQ------------SLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       114 -~~~~~~~~~~~~~~~~------------~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~  176 (382)
                       ...+++.++.++..+.            +.+. +++++.+++..++.+.  +.+.+.+   .+++||+||+|||++|+.
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~--~~V~~~~g~~~~~~~d~lViATGs~p~~  154 (468)
T PRK14694         77 QAPVVDRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERT--LTVTLNDGGEQTVHFDRAFIGTGARPAE  154 (468)
T ss_pred             CCCccCHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCE--EEEEecCCCeEEEECCEEEEeCCCCCCC
Confidence             1123445555443332            2233 7999999999997554  4554332   369999999999999999


Q ss_pred             CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhcc
Q 016820          177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALT  252 (382)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~  252 (382)
                      |++||.+.....   ........  ...+++++|||+|.+|+|+|..|.++|.+|+++.+...++.    .....++.++
T Consensus       155 p~i~G~~~~~~~---~~~~~~~l--~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~~~l~~~~~~~~~~l~~~l~  229 (468)
T PRK14694        155 PPVPGLAETPYL---TSTSALEL--DHIPERLLVIGASVVALELAQAFARLGSRVTVLARSRVLSQEDPAVGEAIEAAFR  229 (468)
T ss_pred             CCCCCCCCCceE---cchhhhch--hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECCCCCCCCCHHHHHHHHHHHH
Confidence            999997652111   11111111  23468999999999999999999999999999987543321    1223346678


Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTT  329 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~  329 (382)
                      +.||+++.+..+.+++.+++.     +.+..   .+ .++++|.+++++|.+|+..++.   .++.. ++|++.||+ .+
T Consensus       230 ~~GI~v~~~~~v~~i~~~~~~-----~~v~~---~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~-~~  298 (468)
T PRK14694        230 REGIEVLKQTQASEVDYNGRE-----FILET---NA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDE-HL  298 (468)
T ss_pred             hCCCEEEeCCEEEEEEEcCCE-----EEEEE---CC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCC-Cc
Confidence            899999999999999876542     33333   11 2599999999999999998753   34554 578999998 68


Q ss_pred             cCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          330 HTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       330 ~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      +|+.|||||+|||++. +..++.|..+|+.+|.||.
T Consensus       299 ~Ts~~~IyA~GD~~~~-~~~~~~A~~~G~~aa~~i~  333 (468)
T PRK14694        299 QTTVSGIYAAGDCTDQ-PQFVYVAAAGGSRAAINMT  333 (468)
T ss_pred             ccCCCCEEEEeecCCC-cccHHHHHHHHHHHHHHhc
Confidence            8999999999999974 5788899999999999986

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=100.00  E-value=1.5e-35  Score=284.18  Aligned_cols=289  Identities=24%  Similarity=0.358  Sum_probs=213.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||++|+++|..|++.|++|+|+|    ....+||.+.+        ++|......++.+...+.+.++|++
T Consensus       132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~  199 (449)
T TIGR01316       132 THKKVAVIGAGPAGLACASELAKAGHSVTVFE----ALHKPGGVVTY--------GIPEFRLPKEIVVTEIKTLKKLGVT  199 (449)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe----cCCCCCcEeee--------cCCCccCCHHHHHHHHHHHHhCCcE
Confidence            45899999999999999999999999999999    44467776643        1222233456777777777888999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcc-eeeec------cCCCCCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGIS-ACAVC------DGAAPIFRD  205 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~-~~~~~------~~~~~~~~~  205 (382)
                      ++.+++..     ..  +..++....||+||+|||+ .|+.+++||.+..   ...... .....      ........+
T Consensus       200 ~~~~~~v~-----~~--v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~g  272 (449)
T TIGR01316       200 FRMNFLVG-----KT--ATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAG  272 (449)
T ss_pred             EEeCCccC-----Cc--CCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCC
Confidence            99886331     11  2222223579999999998 6988889987631   000000 00000      000013357


Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      ++|+|||+|++|+|+|..+.++|.+||+++++...  ....... +.++++||+++++..+.++..+++|+ +..+.+..
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~-~~l~~~GV~~~~~~~~~~i~~~~~g~-v~~v~~~~  350 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEI-AHAEEEGVKFHFLCQPVEIIGDEEGN-VRAVKFRK  350 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHH-HHHHhCCCEEEeccCcEEEEEcCCCe-EEEEEEEE
Confidence            89999999999999999999999999999988643  2233332 44677899999999999998765443 55565542


Q ss_pred             cc---------------CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchh
Q 016820          284 LV---------------TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY  347 (382)
Q Consensus       284 ~~---------------~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~  347 (382)
                      ..               +++...+++|.|++++|.+|+..++. .++.++++|++.||+ .++|+.|+|||+|||+.. +
T Consensus       351 ~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~-~~~Ts~~~VfA~GD~~~g-~  428 (449)
T TIGR01316       351 MDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPIMAETTRLKTSERGTIVVDE-DQRTSIPGVFAGGDIILG-A  428 (449)
T ss_pred             EEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCchhhhccCcccCCCCeEEeCC-CCccCCCCEEEecCCCCC-c
Confidence            10               13345799999999999999988776 467788889999998 788999999999999863 5


Q ss_pred             hHHHHHHhhHHHHHHHHHHHH
Q 016820          348 RQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       348 ~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      .++..|+.+|+.||.+|.++|
T Consensus       429 ~~v~~Ai~~G~~AA~~I~~~L  449 (449)
T TIGR01316       429 ATVIRAMGQGKRAAKSINEYL  449 (449)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC
Confidence            788999999999999999875

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=100.00  E-value=4.1e-36  Score=287.87  Aligned_cols=284  Identities=20%  Similarity=0.228  Sum_probs=204.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCC--CChHHHHHHH-HHHHHHc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG--ILGGDLMDRC-RNQSLRF  133 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~  133 (382)
                      ++|||||||++|+.+|..|+++  +.+|+|||+..    ..+  +. ..   .+|.+...  ....+...+. ..+.++.
T Consensus         2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~----~~~--~~-~~---~lp~~~~~~~~~~~~~~~~~~~~~~~~~   71 (438)
T PRK13512          2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDR----DMS--FA-NC---ALPYYIGEVVEDRKYALAYTPEKFYDRK   71 (438)
T ss_pred             CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCC----Ccc--cc-cC---CcchhhcCccCCHHHcccCCHHHHHHhC
Confidence            4799999999999999999987  68999999531    111  00 00   01111100  1112222222 3344667


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEECC--e--EEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcE
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFTDS--K--SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL  208 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~~~--~--~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  208 (382)
                      |++++.+ +|..||.+++.+.+....  .  ++.||+||+|||++|+.|++++...+..+.+..............++++
T Consensus        72 ~i~v~~~~~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~v  151 (438)
T PRK13512         72 QITVKTYHEVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKA  151 (438)
T ss_pred             CCEEEeCCEEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCCCCCCCCCCCeEEecCHHHHHHHHHHHhhcCCCEE
Confidence            9999875 899999999988887532  2  4789999999999998887654333322333333222221112246899


Q ss_pred             EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      +|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||+++++.++.+++...       +++++
T Consensus       152 vViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~~d~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~-------v~~~~  224 (438)
T PRK13512        152 LVVGAGYISLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEIDAINGNE-------VTFKS  224 (438)
T ss_pred             EEECCCHHHHHHHHHHHhCCCcEEEEecccccchhcCHHHHHHHHHHHHhcCCEEEECCeEEEEeCCE-------EEECC
Confidence            9999999999999999999999999999876532     12223466788999999999999997421       55543


Q ss_pred             ccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHHHHH
Q 016820          284 LVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQAVTA  353 (382)
Q Consensus       284 ~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~~~a  353 (382)
                         +  ..+++|.+++++|++|+++++. .++.++++|++.||+ +++|++|||||+|||+..         .++.++.|
T Consensus       225 ---g--~~~~~D~vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~la~~A  298 (438)
T PRK13512        225 ---G--KVEHYDMIIEGVGTHPNSKFIESSNIKLDDKGFIPVND-KFETNVPNIYAIGDIITSHYRHVDLPASVPLAWGA  298 (438)
T ss_pred             ---C--CEEEeCEEEECcCCCcChHHHHhcCcccCCCCcEEECC-CcccCCCCEEEeeeeEEeeeccCCCceecccchHH
Confidence               3  4689999999999999998876 467788889999998 678999999999999852         23567788


Q ss_pred             HhhHHHHHHHHH
Q 016820          354 AGTGCMAALEAE  365 (382)
Q Consensus       354 ~~~g~~aa~~i~  365 (382)
                      ..+|+.+|+||.
T Consensus       299 ~~~a~~~a~ni~  310 (438)
T PRK13512        299 HRAASIVAEQIA  310 (438)
T ss_pred             HHHHHHHHHHhc
Confidence            899999999886

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=100.00  E-value=2.2e-35  Score=283.46  Aligned_cols=288  Identities=22%  Similarity=0.279  Sum_probs=210.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCC---CCCCChHHHHHH---------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF---PQGILGGDLMDR---------  125 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~---~~~~~~~~~~~~---------  125 (382)
                      ++||+||||||||+++|..|+++|.+|+|||+.   ....||++....+.+...-+   ....+..++..+         
T Consensus         3 ~~dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~---~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (438)
T PRK07251          3 TYDLIVIGFGKAGKTLAAKLASAGKKVALVEES---KAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLR   79 (438)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCEEEEEecC---CcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999952   12368877644332211100   001122333222         


Q ss_pred             --HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCC
Q 016820          126 --CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAP  201 (382)
Q Consensus       126 --~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  201 (382)
                        ..+.+.+.+++++.+++..++  ++.+.+...+  .++.||+||+|||++|+.|++||.+..  ..++.+......  
T Consensus        80 ~~~~~~~~~~gV~~~~g~~~~~~--~~~v~v~~~~~~~~~~~d~vViATGs~~~~p~i~G~~~~--~~v~~~~~~~~~--  153 (438)
T PRK07251         80 GKNYAMLAGSGVDLYDAEAHFVS--NKVIEVQAGDEKIELTAETIVINTGAVSNVLPIPGLADS--KHVYDSTGIQSL--  153 (438)
T ss_pred             HHHHHHHHhCCCEEEEEEEEEcc--CCEEEEeeCCCcEEEEcCEEEEeCCCCCCCCCCCCcCCC--CcEEchHHHhcc--
Confidence              234456679999998876553  4556665422  469999999999999999999997432  112222222222  


Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     .....++.+++.||++++++++.+++.++++   
T Consensus       154 ~~~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~---  230 (438)
T PRK07251        154 ETLPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPREEPSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQ---  230 (438)
T ss_pred             hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCCCCHHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCE---
Confidence            23478999999999999999999999999999999886632     1222345677889999999999999876532   


Q ss_pred             eeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHH
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTA  353 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a  353 (382)
                        +.+..   . +.++++|.+++++|.+|+...+.   .++..+++|++.||+ .++|+.|||||+|||++. +...+.|
T Consensus       231 --v~v~~---~-g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~-~~~t~~~~IyaiGD~~~~-~~~~~~a  302 (438)
T PRK07251        231 --VLVVT---E-DETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDD-YCQTSVPGVFAVGDVNGG-PQFTYIS  302 (438)
T ss_pred             --EEEEE---C-CeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECC-CcccCCCCEEEeeecCCC-cccHhHH
Confidence              44433   1 25799999999999999987653   356677889999998 788999999999999974 5788899


Q ss_pred             HhhHHHHHHHHH
Q 016820          354 AGTGCMAALEAE  365 (382)
Q Consensus       354 ~~~g~~aa~~i~  365 (382)
                      ..+|+.++.++.
T Consensus       303 ~~~~~~~~~~~~  314 (438)
T PRK07251        303 LDDFRIVFGYLT  314 (438)
T ss_pred             HHHHHHHHHHHc
Confidence            999998887775

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=100.00  E-value=6.5e-35  Score=281.52  Aligned_cols=287  Identities=25%  Similarity=0.279  Sum_probs=211.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC------C
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP------Q  115 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~------~  115 (382)
                      ++|+|||+|++|+.+|..++++|.+|+|||+.     ..||++....+.+.-                 .++.      .
T Consensus         2 ~~vvviG~G~~G~~~a~~~~~~g~~v~~~e~~-----~~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~   76 (466)
T PRK07845          2 TRIVIIGGGPGGYEAALVAAQLGADVTVIERD-----GLGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEA   76 (466)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-----CCCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccc
Confidence            58999999999999999999999999999952     367776554432110                 0111      0


Q ss_pred             CCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEE--ecCCcEEEEEC-Ce--EEEcCEEEEccCCCCcCCCC
Q 016820          116 GILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVD--FKSRPFKVFTD-SK--SVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       116 ~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~--~~~~~~~v~~~-~~--~~~~d~lvlA~G~~~~~~~~  179 (382)
                      .++...+.           +.+.+.+++++++++.+++..++  .+.+.+.+.++ +.  ++.||+||+|||++|+.|+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~~~p~  156 (466)
T PRK07845         77 RVDLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPRILPT  156 (466)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCCCCCC
Confidence            12232222           23445556779999999887755  44566777653 33  69999999999999987665


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNP  254 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~  254 (382)
                      ++.+.   ..+.........  ...+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+..     ......+.|++.
T Consensus       157 ~~~~~---~~v~~~~~~~~~--~~~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~l~~~L~~~  231 (466)
T PRK07845        157 AEPDG---ERILTWRQLYDL--DELPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPGEDADAAEVLEEVFARR  231 (466)
T ss_pred             CCCCC---ceEEeehhhhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCCCCHHHHHHHHHHHHHC
Confidence            44321   111111111111  22368999999999999999999999999999998876532     122334667889


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t  331 (382)
                      ||+++.++++.+++.++++     +.+..   .++.++++|.+++++|++|++..+   ..++.++++|++.||+ +++|
T Consensus       232 gV~i~~~~~v~~v~~~~~~-----~~v~~---~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~-~~~T  302 (466)
T PRK07845        232 GMTVLKRSRAESVERTGDG-----VVVTL---TDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDR-VSRT  302 (466)
T ss_pred             CcEEEcCCEEEEEEEeCCE-----EEEEE---CCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECC-Cccc
Confidence            9999999999999876543     33333   123579999999999999999853   2578888899999998 7889


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ++|||||+|||++. +++++.|..||..++.++.
T Consensus       303 s~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~  335 (466)
T PRK07845        303 SVPGIYAAGDCTGV-LPLASVAAMQGRIAMYHAL  335 (466)
T ss_pred             CCCCEEEEeeccCC-ccchhHHHHHHHHHHHHHc
Confidence            99999999999974 6789999999999999986

>PRK14727 putative mercuric reductase; Provisional

Probab=100.00  E-value=1.2e-34  Score=280.55  Aligned_cols=287  Identities=23%  Similarity=0.266  Sum_probs=208.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC---CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP---QG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~---~~  116 (382)
                      .++|++|||+|++|+++|..|+++|.+|+|||    +...+||.|....+.+                 .+.+++   ..
T Consensus        15 ~~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie----~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   90 (479)
T PRK14727         15 LQLHVAIIGSGSAAFAAAIKAAEHGARVTIIE----GADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPS   90 (479)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEE----ccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCc
Confidence            56899999999999999999999999999999    4446788776543211                 111221   11


Q ss_pred             CChHHHHHH-------H-----HHHHHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCC
Q 016820          117 ILGGDLMDR-------C-----RNQSLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       117 ~~~~~~~~~-------~-----~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      .....+..+       +     ...++.. +++++.+++..++  .+.+.+...+   .++.||+||+|||++|+.|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p~i~  168 (479)
T PRK14727         91 IDRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKD--GNTLVVRLHDGGERVLAADRCLIATGSTPTIPPIP  168 (479)
T ss_pred             cCHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEecCCCCCCCCCC
Confidence            233333221       1     1222223 7899988876665  3456665433   2599999999999999999999


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch----HHHHHHhccCCCc
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS----KIMQNRALTNPKI  256 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~----~~~~~~~l~~~gv  256 (382)
                      |.+.......  ......   ...+++++|||+|.+|+|+|..|.++|.+|+++.+...+...    .....+.+++.||
T Consensus       169 G~~~~~~~~~--~~~l~~---~~~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~l~~~L~~~GV  243 (479)
T PRK14727        169 GLMDTPYWTS--TEALFS---DELPASLTVIGSSVVAAEIAQAYARLGSRVTILARSTLLFREDPLLGETLTACFEKEGI  243 (479)
T ss_pred             CcCccceecc--hHHhcc---ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCCCcchHHHHHHHHHHHHhCCC
Confidence            9754111110  011111   224689999999999999999999999999999886433221    1222456778899


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSV  333 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~  333 (382)
                      +++.++++.+++.++++     +.+..   .+ .++++|.+++++|.+|++..+.   .++.++++|++.||+ .++|++
T Consensus       244 ~i~~~~~V~~i~~~~~~-----~~v~~---~~-g~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~-~~~Ts~  313 (479)
T PRK14727        244 EVLNNTQASLVEHDDNG-----FVLTT---GH-GELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNP-AMETSA  313 (479)
T ss_pred             EEEcCcEEEEEEEeCCE-----EEEEE---cC-CeEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECC-CeecCC
Confidence            99999999999876543     44443   22 2589999999999999998643   467788899999999 688999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |||||+|||++. +..++.|..+|+.+|.+|.
T Consensus       314 ~~IyA~GD~~~~-~~~~~~A~~~G~~aa~~i~  344 (479)
T PRK14727        314 PDIYAAGDCSDL-PQFVYVAAAAGSRAGINMT  344 (479)
T ss_pred             CCEEEeeecCCc-chhhhHHHHHHHHHHHHHc
Confidence            999999999974 5778899999999999986

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=100.00  E-value=7.8e-35  Score=280.45  Aligned_cols=291  Identities=20%  Similarity=0.223  Sum_probs=211.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccC----CCCCCCcceecCCCccc---------------CC--CC-
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMA----NDIAPGGQLTTTSDVEN---------------FP--GF-  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~----~~~~~gg~~~~~~~~~~---------------~~--~~-  113 (382)
                      .++||+|||+|++|..+|..++++ |.+|+|||+...    ....+||.|....+.+.               ..  ++ 
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~gi~   81 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFGWE   81 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccCee
Confidence            468999999999999999999997 999999995210    01368888775543311               01  11 


Q ss_pred             ----CCCCChHHHHHHH-----------HHHHHH-cCcEEEEeeEEEEEecCCcEEEEEC-------CeEEEcCEEEEcc
Q 016820          114 ----PQGILGGDLMDRC-----------RNQSLR-FGTQIFTETVSKVDFKSRPFKVFTD-------SKSVLADTVIVAT  170 (382)
Q Consensus       114 ----~~~~~~~~~~~~~-----------~~~~~~-~gi~~~~~~v~~i~~~~~~~~v~~~-------~~~~~~d~lvlA~  170 (382)
                          ...++...+.++.           .+.+++ .|++++.++...++  ++.+.+...       ...+.||+||+||
T Consensus        82 ~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~--~~~v~V~~~~~~~~~~~~~~~~d~lIIAT  159 (486)
T TIGR01423        82 FDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALED--KNVVLVRESADPKSAVKERLQAEHILLAT  159 (486)
T ss_pred             ccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEcc--CCEEEEeeccCCCCCcceEEECCEEEEec
Confidence                0112333333332           223344 38999999876555  445666431       2369999999999


Q ss_pred             CCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeCCCCcc-----
Q 016820          171 GAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRRDSFRA-----  242 (382)
Q Consensus       171 G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~~~~~~-----  242 (382)
                      |++|..|++||.+..+..  ...   ...  ...+++++|||+|.+|+|+|..+..+   |.+|+++++.+.+..     
T Consensus       160 Gs~p~~p~i~G~~~~~~~--~~~---~~~--~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il~~~d~~  232 (486)
T TIGR01423       160 GSWPQMLGIPGIEHCISS--NEA---FYL--DEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMILRGFDST  232 (486)
T ss_pred             CCCCCCCCCCChhheech--hhh---hcc--ccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccccccCHH
Confidence            999999999987543211  111   111  23478999999999999999877655   899999999887532     


Q ss_pred             hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCC
Q 016820          243 SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSD  319 (382)
Q Consensus       243 ~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~  319 (382)
                      ......+.|++.||+++.++.+.+++.++++  ...+.+.+   +  .++++|.+++++|++|++..+.   .++.++++
T Consensus       233 ~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~--~~~v~~~~---g--~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~  305 (486)
T TIGR01423       233 LRKELTKQLRANGINIMTNENPAKVTLNADG--SKHVTFES---G--KTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKK  305 (486)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEcCCc--eEEEEEcC---C--CEEEcCEEEEeeCCCcCcccCCchhhCceECCC
Confidence            1222345678899999999999999876443  12233322   3  4799999999999999998653   56788889


Q ss_pred             CceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          320 GYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       320 g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |++.||+ +++|+.|||||+|||++. +..++.|++||+.+|.||.
T Consensus       306 G~I~Vd~-~l~Ts~~~IyA~GDv~~~-~~l~~~A~~qG~~aa~ni~  349 (486)
T TIGR01423       306 GAIQVDE-FSRTNVPNIYAIGDVTDR-VMLTPVAINEGAAFVDTVF  349 (486)
T ss_pred             CCEecCC-CCcCCCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHh
Confidence            9999999 678999999999999974 5788999999999999996

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK13748 putative mercuric reductase; Provisional

Probab=100.00  E-value=7e-35  Score=288.65  Aligned_cols=286  Identities=24%  Similarity=0.285  Sum_probs=210.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cC-CCCC---C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NF-PGFP---Q  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~-~~~~---~  115 (382)
                      ..+||+|||||++|+.+|..|+++|.+|+|||+    . .+||+|....+.+                 .+ .+++   .
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~----~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~  171 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIER----G-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVP  171 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEec----C-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCC
Confidence            358999999999999999999999999999994    3 6788775443221                 11 1221   1


Q ss_pred             CCChHHHHHHHH------------HHHHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCC
Q 016820          116 GILGGDLMDRCR------------NQSLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       116 ~~~~~~~~~~~~------------~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ......+.++..            ..+++. +++++.+++..++.  +.+.+...+   .+++||+||+|||++|+.|++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i  249 (561)
T PRK13748        172 TIDRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDD--QTLIVRLNDGGERVVAFDRCLIATGASPAVPPI  249 (561)
T ss_pred             ccCHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecC--CEEEEEeCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence            233444443322            223344 79999998887764  355565432   259999999999999999999


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCCC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNPK  255 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~g  255 (382)
                      ||.+......  ...... .  ...+++++|||+|.+|+|+|..|.++|.+|+++.+...+..    ......+.+++.|
T Consensus       250 ~g~~~~~~~~--~~~~~~-~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~g  324 (561)
T PRK13748        250 PGLKETPYWT--STEALV-S--DTIPERLAVIGSSVVALELAQAFARLGSKVTILARSTLFFREDPAIGEAVTAAFRAEG  324 (561)
T ss_pred             CCCCccceEc--cHHHhh-c--ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCccccccCHHHHHHHHHHHHHCC
Confidence            9976411100  001011 1  23468999999999999999999999999999998654321    1122346678899


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |+++.++.+.+++.++++     +.+..   .+ .++++|.+++++|.+|++..+.   .++.++++|++.||+ +++|+
T Consensus       325 I~i~~~~~v~~i~~~~~~-----~~v~~---~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts  394 (561)
T PRK13748        325 IEVLEHTQASQVAHVDGE-----FVLTT---GH-GELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQ-GMRTS  394 (561)
T ss_pred             CEEEcCCEEEEEEecCCE-----EEEEe---cC-CeEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECC-CcccC
Confidence            999999999999876542     34433   12 2599999999999999998642   578888899999998 78899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      .|||||+|||++. +..++.|..+|+.+|.||.
T Consensus       395 ~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~  426 (561)
T PRK13748        395 VPHIYAAGDCTDQ-PQFVYVAAAAGTRAAINMT  426 (561)
T ss_pred             CCCEEEeeecCCC-ccchhHHHHHHHHHHHHHc
Confidence            9999999999974 5788899999999999996

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=100.00  E-value=2.9e-35  Score=283.68  Aligned_cols=288  Identities=22%  Similarity=0.259  Sum_probs=208.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCC--CCChHHHHHHHHHHHHHcC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ--GILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g  134 (382)
                      ++|||||||++|+++|..|++++  .+|+|||+..    ..+  +. ...   ++.+..  .....++..+..+.+.+.|
T Consensus         1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~----~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g   70 (444)
T PRK09564          1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTD----IVS--FG-ACG---LPYFVGGFFDDPNTMIARTPEEFIKSG   70 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCC----cce--ee-cCC---CceEeccccCCHHHhhcCCHHHHHHCC
Confidence            37999999999999999999985  5899999532    111  00 000   111111  1123344555556677889


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEE--CCeEEE--cCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCC
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFT--DSKSVL--ADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDK  206 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~--~~~~~~--~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~  206 (382)
                      ++++.+ +|..|+++++.+.+..  ++..+.  ||+||+|||++|+.|+++|.+.   +...................++
T Consensus        71 v~~~~~~~V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~~~~~i~g~~~~~v~~~~~~~~~~~l~~~l~~~~~~  150 (444)
T PRK09564         71 IDVKTEHEVVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARPIIPPIKNINLENVYTLKSMEDGLALKELLKDEEIK  150 (444)
T ss_pred             CeEEecCEEEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCC
Confidence            998876 7999999888887764  244566  9999999999999999988753   1111111111111111122468


Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      +++|+|+|.+|+|+|..|.+.|.+|+++.+.+.+..   .   ....++.+++.||+++.++++.++..++.   +..+.
T Consensus       151 ~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~---~~~v~  227 (444)
T PRK09564        151 NIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILPDSFDKEITDVMEEELRENGVELHLNEFVKSLIGEDK---VEGVV  227 (444)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCchhcCHHHHHHHHHHHHHCCCEEEcCCEEEEEecCCc---EEEEE
Confidence            999999999999999999999999999998875422   1   12234567789999999999999976442   22222


Q ss_pred             EEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHH
Q 016820          281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQA  350 (382)
Q Consensus       281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~  350 (382)
                      .+    +  ..+++|.+++|+|.+|+.++++ .++.++++|++.||+ .++|++|||||+|||+..         .++.+
T Consensus       228 ~~----~--~~i~~d~vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~  300 (444)
T PRK09564        228 TD----K--GEYEADVVIVATGVKPNTEFLEDTGLKTLKNGAIIVDE-YGETSIENIYAAGDCATIYNIVSNKNVYVPLA  300 (444)
T ss_pred             eC----C--CEEEcCEEEECcCCCcCHHHHHhcCccccCCCCEEECC-CcccCCCCEEEeeeEEEEEeccCCCeeeccch
Confidence            21    2  3599999999999999988776 567777889999998 678999999999999863         14678


Q ss_pred             HHHHhhHHHHHHHHHH
Q 016820          351 VTAAGTGCMAALEAEH  366 (382)
Q Consensus       351 ~~a~~~g~~aa~~i~~  366 (382)
                      +.|+.||+.+|.||..
T Consensus       301 ~~A~~qg~~~a~ni~g  316 (444)
T PRK09564        301 TTANKLGRMVGENLAG  316 (444)
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            8999999999999874

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=3.1e-34  Score=277.51  Aligned_cols=290  Identities=26%  Similarity=0.300  Sum_probs=210.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------ccCCCC-----CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------ENFPGF-----PQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~~~~~~-----~~~  116 (382)
                      ..+||+|||||++|+++|..|++.|.+|+|||+     ...||.+....+.               .+++.+     ...
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-----~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~   76 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-----GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPK   76 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-----CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCc
Confidence            458999999999999999999999999999994     3567776532211               111111     124


Q ss_pred             CChHHHHHHHHHHH------------HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          117 ILGGDLMDRCRNQS------------LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       117 ~~~~~~~~~~~~~~------------~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      ..+.++.+++++..            ...+++++.+++..++.  ..+.+  ++.++.||+||+|||++  .|.+||...
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~v~v--~~~~~~~d~lIiATGs~--~p~ipg~~~  150 (460)
T PRK06292         77 IDFKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDP--NTVEV--NGERIEAKNIVIATGSR--VPPIPGVWL  150 (460)
T ss_pred             cCHHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccC--CEEEE--CcEEEEeCEEEEeCCCC--CCCCCCCcc
Confidence            55666665554432            33477888777666553  23333  66779999999999999  445666543


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~  259 (382)
                      .....+..+......  ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+..     .....++.+++. |+++
T Consensus       151 ~~~~~~~~~~~~~~~--~~~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~~~~l~~~-I~i~  227 (460)
T PRK06292        151 ILGDRLLTSDDAFEL--DKLPKSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILPLEDPEVSKQAQKILSKE-FKIK  227 (460)
T ss_pred             cCCCcEECchHHhCc--cccCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcchhHHHHHHHHHHHhhc-cEEE
Confidence            222222222222222  23578999999999999999999999999999999887632     112224557777 9999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      ++.++.+++.+++.    .+.+.. .++++.++++|.+++++|.+|+...+.   .++.++++|++.||+ .++|+.|||
T Consensus       228 ~~~~v~~i~~~~~~----~v~~~~-~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~-~~~ts~~~I  301 (460)
T PRK06292        228 LGAKVTSVEKSGDE----KVEELE-KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDE-HTQTSVPGI  301 (460)
T ss_pred             cCCEEEEEEEcCCc----eEEEEE-cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECC-CcccCCCCE
Confidence            99999999876531    144421 124456799999999999999998543   567788899999999 788999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      ||+|||++. ++.+..|+.||+.+|.+|...
T Consensus       302 yA~GD~~~~-~~~~~~A~~qg~~aa~~i~~~  331 (460)
T PRK06292        302 YAAGDVNGK-PPLLHEAADEGRIAAENAAGD  331 (460)
T ss_pred             EEEEecCCC-ccchhHHHHHHHHHHHHhcCC
Confidence            999999974 568899999999999999753

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=100.00  E-value=2.1e-35  Score=277.51  Aligned_cols=294  Identities=20%  Similarity=0.229  Sum_probs=214.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCC-CCChHHHHHHHHHHHHHcCc
Q 016820           60 KVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ-GILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~gi  135 (382)
                      +|||||||+||+.+|..|+++   +.+|+|||++...        .+..   .++.+.. .....++...+.+.++++++
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~--------~~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~gv   69 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT--------PYSG---MLPGMIAGHYSLDEIRIDLRRLARQAGA   69 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC--------cccc---hhhHHHheeCCHHHhcccHHHHHHhcCC
Confidence            589999999999999999654   6899999953111        0000   1111111 23456677777788888899


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeee----ccCCCC-CCCCCcE
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAV----CDGAAP-IFRDKPL  208 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~----~~~~~~-~~~~~~v  208 (382)
                      +++.++|+.||.+++.+.+. ++.+++||+||+|||+.|..|.+||..+.  ..+.+.....    ...... ....+++
T Consensus        70 ~~~~~~v~~id~~~~~V~~~-~g~~~~yD~LviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  148 (364)
T TIGR03169        70 RFVIAEATGIDPDRRKVLLA-NRPPLSYDVLSLDVGSTTPLSGVEGAADLAVPVKPIENFLARWEALLESADAPPGTKRL  148 (364)
T ss_pred             EEEEEEEEEEecccCEEEEC-CCCcccccEEEEccCCCCCCCCCCcccccccccCCHHHHHHHHHHHHHHHhcCCCCceE
Confidence            99999999999988755543 44579999999999999999999985441  1122111110    111100 1235799


Q ss_pred             EEEcCCchHHHHHHHHhhc----C--CEEEEEEeCCCCc-----chHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820          209 AVIGGGDSAMEEANFLTKY----G--SKVYIIHRRDSFR-----ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG  277 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~----g--~~v~~~~~~~~~~-----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~  277 (382)
                      +|+|+|.+|+|+|..|.+.    +  .+|+++ +.+.+.     ......++.+++.||+++.++.+.+++.+.      
T Consensus       149 vVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li-~~~~~l~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~------  221 (364)
T TIGR03169       149 AVVGGGAAGVEIALALRRRLPKRGLRGQVTLI-AGASLLPGFPAKVRRLVLRLLARRGIEVHEGAPVTRGPDGA------  221 (364)
T ss_pred             EEECCCHHHHHHHHHHHHHHHhcCCCceEEEE-eCCcccccCCHHHHHHHHHHHHHCCCEEEeCCeeEEEcCCe------
Confidence            9999999999999999753    3  589998 444431     122333567888999999999999986442      


Q ss_pred             eEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC-CCCceEEecccCCc----hhhHHHH
Q 016820          278 GLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT-SVPGVFAAGDVQDK----KYRQAVT  352 (382)
Q Consensus       278 ~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t-~~~~vya~GD~~~~----~~~~~~~  352 (382)
                       +.+.+   +  .++++|.+++++|.+|+..+...++.++++|++.||+ ++++ ++|||||+|||+..    .++.+..
T Consensus       222 -v~~~~---g--~~i~~D~vi~a~G~~p~~~l~~~gl~~~~~g~i~vd~-~l~~~~~~~Iya~GD~~~~~~~~~~~~~~~  294 (364)
T TIGR03169       222 -LILAD---G--RTLPADAILWATGARAPPWLAESGLPLDEDGFLRVDP-TLQSLSHPHVFAAGDCAVITDAPRPKAGVY  294 (364)
T ss_pred             -EEeCC---C--CEEecCEEEEccCCChhhHHHHcCCCcCCCCeEEECC-ccccCCCCCEEEeeeeeecCCCCCCCchHH
Confidence             55543   3  5799999999999999876555677788899999998 5666 99999999999852    2567889


Q ss_pred             HHhhHHHHHHHHHHHHHHccCcccccc
Q 016820          353 AAGTGCMAALEAEHYLQEIGSQEDKSE  379 (382)
Q Consensus       353 a~~~g~~aa~~i~~~l~~~~~~~~~~~  379 (382)
                      |+.||+.+|+||.+.+.++++.++++.
T Consensus       295 A~~~g~~~a~ni~~~l~g~~~~~~~~~  321 (364)
T TIGR03169       295 AVRQAPILAANLRASLRGQPLRPFRPQ  321 (364)
T ss_pred             HHHhHHHHHHHHHHHhcCCCCCCCccc
Confidence            999999999999999998877666543

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PTZ00058 glutathione reductase; Provisional

Probab=100.00  E-value=3.8e-34  Score=278.37  Aligned_cols=291  Identities=20%  Similarity=0.208  Sum_probs=209.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC--CC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP--QG  116 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~--~~  116 (382)
                      ..++||+|||||++|+.+|..++++|.+|+|||+.     .+||+|....+.+.-                 .++.  ..
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-----~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~  120 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-----YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFS  120 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-----cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCc
Confidence            36789999999999999999999999999999952     578876654433110                 0111  11


Q ss_pred             CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEec------------------CCcEEEE------E-CCeE
Q 016820          117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFK------------------SRPFKVF------T-DSKS  160 (382)
Q Consensus       117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~------------------~~~~~v~------~-~~~~  160 (382)
                      ++...+.++           +.+.+++.|++++.++...+++.                  ++.+++.      . ++.+
T Consensus       121 ~d~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~  200 (561)
T PTZ00058        121 FNLPLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQV  200 (561)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcE
Confidence            233332222           33444567999999976444311                  1223332      1 3456


Q ss_pred             EEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          161 VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       161 ~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ++||+||+|||++|+.|++||.+..+     .+.   .......+++++|||+|.+|+|+|..|.++|++||++.+.+.+
T Consensus       201 i~ad~lVIATGS~P~~P~IpG~~~v~-----ts~---~~~~l~~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~i  272 (561)
T PTZ00058        201 IEGKNILIAVGNKPIFPDVKGKEFTI-----SSD---DFFKIKEAKRIGIAGSGYIAVELINVVNRLGAESYIFARGNRL  272 (561)
T ss_pred             EECCEEEEecCCCCCCCCCCCceeEE-----EHH---HHhhccCCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEecccc
Confidence            99999999999999999999865211     111   1111223789999999999999999999999999999998865


Q ss_pred             cc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc-cc
Q 016820          241 RA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-QL  314 (382)
Q Consensus       241 ~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~-~~  314 (382)
                      ..     ......+.+++.||+++.+..+.+++.++++.    +.+...  +++..+++|.+++++|++|++..+.. ++
T Consensus       273 l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~----v~v~~~--~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~  346 (561)
T PTZ00058        273 LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKN----LTIYLS--DGRKYEHFDYVIYCVGRSPNTEDLNLKAL  346 (561)
T ss_pred             cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCc----EEEEEC--CCCEEEECCEEEECcCCCCCccccCcccc
Confidence            32     12223456778899999999999998765421    333221  22357999999999999999987752 22


Q ss_pred             -cccCCCceeeCCCCCcCCCCceEEecccCCc---------------------------------hhhHHHHHHhhHHHH
Q 016820          315 -DLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------------------------------KYRQAVTAAGTGCMA  360 (382)
Q Consensus       315 -~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------------------------------~~~~~~~a~~~g~~a  360 (382)
                       ..+++|+|.||+ +++|++|||||+|||++.                                 .+..++.|..||+.+
T Consensus       347 ~~~~~~G~I~VDe-~lqTs~p~IYA~GDv~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~la~~A~~~g~~a  425 (561)
T PTZ00058        347 NIKTPKGYIKVDD-NQRTSVKHIYAVGDCCMVKKNQEIEDLNLLKLYNEEPYLKKKENTSGESYYNVQLTPVAINAGRLL  425 (561)
T ss_pred             ceecCCCeEEECc-CCccCCCCEEEeEeccCccccccccccccccccccccccccccccccccccCcCchHHHHHHHHHH
Confidence             134689999998 788999999999999972                                 367889999999999


Q ss_pred             HHHHHH
Q 016820          361 ALEAEH  366 (382)
Q Consensus       361 a~~i~~  366 (382)
                      |.||..
T Consensus       426 a~ni~g  431 (561)
T PTZ00058        426 ADRLFG  431 (561)
T ss_pred             HHHHhC
Confidence            999963

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=4.7e-34  Score=276.40  Aligned_cols=297  Identities=25%  Similarity=0.292  Sum_probs=211.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecc--cCCCCCCCcceecCCCccc------------------CCCCC---
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGW--MANDIAPGGQLTTTSDVEN------------------FPGFP---  114 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~--~~~~~~~gg~~~~~~~~~~------------------~~~~~---  114 (382)
                      .+|++|||||++|+++|..+++.|.+|+|||++  .......||.|....+.+.                  ..+..   
T Consensus         4 ~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~~~   83 (475)
T PRK06327          4 QFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHVDG   83 (475)
T ss_pred             ceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccCCC
Confidence            589999999999999999999999999999951  1112456776654332110                  00111   


Q ss_pred             CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE--C-CeEEEcCEEEEccCCCCcCCCCC
Q 016820          115 QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT--D-SKSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       115 ~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~--~-~~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      ...+..++.++           +.+..+..+++++.+++..++.+.+.+++..  + +.+++||+||+|||++|+.++..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~~~p~~  163 (475)
T PRK06327         84 VKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPRHLPGV  163 (475)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCCCCCCC
Confidence            11233333332           2334455699999999888876554545443  2 34799999999999999754322


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCC
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNP  254 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~  254 (382)
                      +.+   ...++.+......  ...+++++|||+|.+|+|+|..|.++|.+|+++++.+.+..      ...+ .+.+++.
T Consensus       164 ~~~---~~~~~~~~~~~~~--~~~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~~~d~~~~~~~-~~~l~~~  237 (475)
T PRK06327        164 PFD---NKIILDNTGALNF--TEVPKKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLAAADEQVAKEA-AKAFTKQ  237 (475)
T ss_pred             CCC---CceEECcHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCCcCCHHHHHHH-HHHHHHc
Confidence            211   1222222222222  23468999999999999999999999999999999887632      2222 3557778


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t  331 (382)
                      ||+++.++++.+++.++++  + .+.+.+ .+++...+++|.+++++|.+|++..+.   .++.++++|++.||+ .++|
T Consensus       238 gi~i~~~~~v~~i~~~~~~--v-~v~~~~-~~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~T  312 (475)
T PRK06327        238 GLDIHLGVKIGEIKTGGKG--V-SVAYTD-ADGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDD-HCRT  312 (475)
T ss_pred             CcEEEeCcEEEEEEEcCCE--E-EEEEEe-CCCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECC-CCcc
Confidence            9999999999999877653  1 233333 123335799999999999999998542   467788899999998 6889


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +.|+|||+|||+.. +.+++.|..||..+|.+|..
T Consensus       313 s~~~VyA~GD~~~~-~~~~~~A~~~G~~aa~~i~g  346 (475)
T PRK06327        313 NVPNVYAIGDVVRG-PMLAHKAEEEGVAVAERIAG  346 (475)
T ss_pred             CCCCEEEEEeccCC-cchHHHHHHHHHHHHHHHcC
Confidence            99999999999874 56899999999999999863

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=1.5e-34  Score=279.01  Aligned_cols=292  Identities=22%  Similarity=0.251  Sum_probs=203.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC------------C-------CC--CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF------------P-------GF--PQG  116 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~------------~-------~~--~~~  116 (382)
                      ++||+||||||+|+++|..+++.|.+|+|||    +...+||++....+.+..            .       +.  ...
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE----~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~   78 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQLGLKVACVE----GRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPT   78 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCeEEEEe----cCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCc
Confidence            4899999999999999999999999999999    334678876544322100            0       00  011


Q ss_pred             CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCCCCCCC
Q 016820          117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKLQFPGS  182 (382)
Q Consensus       117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~~~~g~  182 (382)
                      ....++.++           +....++.+++++.++. .++. +.++.+..+ +  .+++||+||+|||++|.  ++||.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a-~~~~-~~~v~v~~~~g~~~~~~~d~lVIATGs~p~--~ipg~  154 (466)
T PRK06115         79 LNLAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWG-RLDG-VGKVVVKAEDGSETQLEAKDIVIATGSEPT--PLPGV  154 (466)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEE-EEcc-CCEEEEEcCCCceEEEEeCEEEEeCCCCCC--CCCCC
Confidence            222322222           22334456899988875 3332 334555443 3  25999999999999985  35664


Q ss_pred             ccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcE
Q 016820          183 DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKID  257 (382)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~  257 (382)
                      .. ....+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.|++.||+
T Consensus       155 ~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~~~d~~~~~~l~~~l~~~gV~  231 (466)
T PRK06115        155 TI-DNQRIIDSTGALSL--PEVPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICPGTDTETAKTLQKALTKQGMK  231 (466)
T ss_pred             CC-CCCeEECHHHHhCC--ccCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCCCCCHHHHHHHHHHHHhcCCE
Confidence            32 11111111111111  23579999999999999999999999999999998876532     122234667788999


Q ss_pred             EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820          258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP  334 (382)
Q Consensus       258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~  334 (382)
                      +++++++.+++.++++  + .+.+.....+++..+++|.|++++|++|++..+.   .++..+++| +.+|+ .++|+.|
T Consensus       232 i~~~~~V~~i~~~~~~--v-~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~~~G-~~vd~-~~~Ts~~  306 (466)
T PRK06115        232 FKLGSKVTGATAGADG--V-SLTLEPAAGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETDKRG-MLAND-HHRTSVP  306 (466)
T ss_pred             EEECcEEEEEEEcCCe--E-EEEEEEcCCCceeEEEeCEEEEccCCccccccCCcccccceeCCCC-EEECC-CeecCCC
Confidence            9999999999876543  1 2333322224456799999999999999998653   356666666 56887 7899999


Q ss_pred             ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +|||+|||++. +..++.|..||+.+|+||..
T Consensus       307 ~IyA~GD~~~~-~~la~~A~~~g~~aa~~i~~  337 (466)
T PRK06115        307 GVWVIGDVTSG-PMLAHKAEDEAVACIERIAG  337 (466)
T ss_pred             CEEEeeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence            99999999974 57899999999999999974

>PRK07846 mycothione reductase; Reviewed

Probab=100.00  E-value=2.9e-34  Score=275.47  Aligned_cols=283  Identities=19%  Similarity=0.256  Sum_probs=205.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCC---CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFP---QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~---~~~  117 (382)
                      ++|++|||+|++|..+|..  ..|.+|+|||+.     ..||.|....+.+.-                 .+..   ..+
T Consensus         1 ~yD~vVIG~G~~g~~aa~~--~~G~~V~lie~~-----~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~   73 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDER--FADKRIAIVEKG-----TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGV   73 (451)
T ss_pred             CCCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-----CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcC
Confidence            3799999999999998876  469999999952     577777655433210                 1111   123


Q ss_pred             ChHHHHHHHHH------------H-HHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          118 LGGDLMDRCRN------------Q-SLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       118 ~~~~~~~~~~~------------~-~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      ++.++.++...            . +++.|++++.++...++  ++.+.+. ++.+++||+||+|||++|+.|++||.+.
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~V~v~-~g~~~~~d~lViATGs~p~~p~i~g~~~  150 (451)
T PRK07846         74 RWPDIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIG--PKTLRTG-DGEEITADQVVIAAGSRPVIPPVIADSG  150 (451)
T ss_pred             CHHHHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEec--CCEEEEC-CCCEEEeCEEEEcCCCCCCCCCCCCcCC
Confidence            44444433211            1 34568999998877664  4444443 3457999999999999999999998653


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--hHHH---HHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--SKIM---QNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~~~~---~~~~l~~~gv~~~  259 (382)
                      ..   .+........  ...+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+..  ...+   ..+.+ +.+|+++
T Consensus       151 ~~---~~~~~~~~~l--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~l~-~~~v~i~  224 (451)
T PRK07846        151 VR---YHTSDTIMRL--PELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLLRHLDDDISERFTELA-SKRWDVR  224 (451)
T ss_pred             cc---EEchHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHH-hcCeEEE
Confidence            21   1111111111  22468999999999999999999999999999999887631  1121   22333 4689999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      +++++.+++.++++     +.+..   .++.++++|.+++++|++|+++++.   .++.++++|++.||+ +++|++|||
T Consensus       225 ~~~~v~~i~~~~~~-----v~v~~---~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~-~~~Ts~p~I  295 (451)
T PRK07846        225 LGRNVVGVSQDGSG-----VTLRL---DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDE-YQRTSAEGV  295 (451)
T ss_pred             eCCEEEEEEEcCCE-----EEEEE---CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECC-CcccCCCCE
Confidence            99999999876543     44433   2235799999999999999998863   467888899999999 688999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ||+|||++. +..++.|.+||+.+|+||..
T Consensus       296 yA~GD~~~~-~~l~~~A~~~g~~~a~ni~~  324 (451)
T PRK07846        296 FALGDVSSP-YQLKHVANHEARVVQHNLLH  324 (451)
T ss_pred             EEEeecCCC-ccChhHHHHHHHHHHHHHcC
Confidence            999999974 57889999999999999963

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=6.2e-34  Score=275.67  Aligned_cols=291  Identities=21%  Similarity=0.256  Sum_probs=205.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc-----------------CCCCC---CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN-----------------FPGFP---QG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~-----------------~~~~~---~~  116 (382)
                      ..+||+||||||+|+++|..|+++|.+|+|||+    . .+||+|....+.+.                 ..+..   ..
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~----~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEK----G-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPA   77 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHhCCCeEEEEEc----c-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            468999999999999999999999999999994    2 57888765432211                 00110   11


Q ss_pred             CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEec-----CCcEEEEECC---eEEEcCEEEEccCCCCcCC
Q 016820          117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFK-----SRPFKVFTDS---KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~-----~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~  177 (382)
                      .....+.++           ..+.+++.+++++.++++.++++     ++.+.+.+++   .++.||+||+|||++|+.+
T Consensus        78 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~~~  157 (472)
T PRK05976         78 LDFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPVEL  157 (472)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCCCC
Confidence            232222222           23445667999999999888865     3356666533   3699999999999998654


Q ss_pred             CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhcc
Q 016820          178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALT  252 (382)
Q Consensus       178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~  252 (382)
                      +  +... ....+..+......  ...+++++|||+|++|+|+|..|.++|.+|+++++.+.+...     .....+.++
T Consensus       158 p--~~~~-~~~~~~~~~~~~~~--~~~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il~~~~~~~~~~l~~~l~  232 (472)
T PRK05976        158 P--GLPF-DGEYVISSDEALSL--ETLPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRILPTEDAELSKEVARLLK  232 (472)
T ss_pred             C--CCCC-CCceEEcchHhhCc--cccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccCCcCCHHHHHHHHHHHH
Confidence            3  2221 01111111111111  224689999999999999999999999999999998865321     122235677


Q ss_pred             CCCcEEEcCceeEEEEec-CCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGE-GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGT  328 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~-~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~  328 (382)
                      +.||+++.++++.+++.. +++  +..+...   +++..++++|.+++++|.+|+...+.   .++.. ++|++.||+ .
T Consensus       233 ~~gI~i~~~~~v~~i~~~~~~~--~~~~~~~---~g~~~~i~~D~vi~a~G~~p~~~~l~l~~~~~~~-~~g~i~Vd~-~  305 (472)
T PRK05976        233 KLGVRVVTGAKVLGLTLKKDGG--VLIVAEH---NGEEKTLEADKVLVSVGRRPNTEGIGLENTDIDV-EGGFIQIDD-F  305 (472)
T ss_pred             hcCCEEEeCcEEEEEEEecCCC--EEEEEEe---CCceEEEEeCEEEEeeCCccCCCCCCchhcCcee-cCCEEEECC-C
Confidence            889999999999999862 222  1112222   24445799999999999999987543   23333 468999998 7


Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ++|+.|+|||+|||++. ++.+..|+.+|+.+|.+|.
T Consensus       306 l~ts~~~IyAiGD~~~~-~~~~~~A~~~g~~aa~~i~  341 (472)
T PRK05976        306 CQTKERHIYAIGDVIGE-PQLAHVAMAEGEMAAEHIA  341 (472)
T ss_pred             cccCCCCEEEeeecCCC-cccHHHHHHHHHHHHHHHc
Confidence            88999999999999864 5789999999999999985

>PTZ00052 thioredoxin reductase; Provisional

Probab=100.00  E-value=4.2e-34  Score=277.27  Aligned_cols=290  Identities=18%  Similarity=0.211  Sum_probs=209.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc----CCCCCCCcceecCCCccc------------------CCCC--
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM----ANDIAPGGQLTTTSDVEN------------------FPGF--  113 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~----~~~~~~gg~~~~~~~~~~------------------~~~~--  113 (382)
                      .+||+||||||+|+++|..|+++|.+|+|||+..    .....+||+|....+.+.                  ..++  
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~~~   84 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGWKT   84 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCCCC
Confidence            5899999999999999999999999999999521    111247888765433321                  0011  


Q ss_pred             CCCCChHHHHHHHHHHHHH-----------cCcEEEEeeEEEEEecCCcEEEEEC--CeEEEcCEEEEccCCCCcCCC-C
Q 016820          114 PQGILGGDLMDRCRNQSLR-----------FGTQIFTETVSKVDFKSRPFKVFTD--SKSVLADTVIVATGAVAKKLQ-F  179 (382)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~-----------~gi~~~~~~v~~i~~~~~~~~v~~~--~~~~~~d~lvlA~G~~~~~~~-~  179 (382)
                      +......++.+++....++           .+|+++.+++...+  ...+.+..+  ...++||+||+|||++|..|. +
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~--~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i  162 (499)
T PTZ00052         85 SSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKD--EHTVSYGDNSQEETITAKYILIATGGRPSIPEDV  162 (499)
T ss_pred             CCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEcc--CCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence            1135666776666554433           46777777765543  344555432  246999999999999999874 8


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCCC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNPK  255 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~g  255 (382)
                      ||.+.....    +......  ...+++++|||+|.+|+|+|..|.++|.+||++.+...+..    ......+.|++.|
T Consensus       163 ~G~~~~~~~----~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~l~~~G  236 (499)
T PTZ00052        163 PGAKEYSIT----SDDIFSL--SKDPGKTLIVGASYIGLETAGFLNELGFDVTVAVRSIPLRGFDRQCSEKVVEYMKEQG  236 (499)
T ss_pred             CCccceeec----HHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCcccccCCHHHHHHHHHHHHHcC
Confidence            886542111    1111111  22467999999999999999999999999999987543321    1223346678889


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |+++++..+.++...+++   ..+.+.+   +  .++++|.+++++|++|++.++.   .++.++++|++.+++.  +|+
T Consensus       237 V~i~~~~~v~~v~~~~~~---~~v~~~~---g--~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~~~--~Ts  306 (499)
T PTZ00052        237 TLFLEGVVPINIEKMDDK---IKVLFSD---G--TTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAPND--CTN  306 (499)
T ss_pred             CEEEcCCeEEEEEEcCCe---EEEEECC---C--CEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeCCC--cCC
Confidence            999999999999876532   1233322   3  4689999999999999998763   4677888898878774  899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      .|+|||+|||+...+..++.|+++|+.+|.||.
T Consensus       307 ~p~IyAiGDv~~~~~~l~~~A~~~g~~aa~ni~  339 (499)
T PTZ00052        307 IPNIFAVGDVVEGRPELTPVAIKAGILLARRLF  339 (499)
T ss_pred             CCCEEEEEEecCCCcccHHHHHHHHHHHHHHHh
Confidence            999999999986456789999999999999996

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=100.00  E-value=6.2e-34  Score=274.86  Aligned_cols=295  Identities=18%  Similarity=0.177  Sum_probs=210.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----CCCCCCcceecCCCccc---------------CC--CCC--
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----NDIAPGGQLTTTSDVEN---------------FP--GFP--  114 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~~~~~gg~~~~~~~~~~---------------~~--~~~--  114 (382)
                      ++||+|||+|++|+.+|..++++|.+|+|||+...    .....||.|....+.+.               ..  ++.  
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~   81 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWNVE   81 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcccC
Confidence            58999999999999999999999999999995311    11247887664332210               00  111  


Q ss_pred             --CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEE-CC--eEEEcCEEEEccCCCCcCCC
Q 016820          115 --QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       115 --~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                        ..++...+.++           ....++..|++++.+....+++  +.+.+.. ++  ..+.||+||+|||++|+.|+
T Consensus        82 ~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~--~~v~v~~~~g~~~~~~~d~lVIATGs~p~~p~  159 (484)
T TIGR01438        82 ETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDK--HRIKATNKKGKEKIYSAERFLIATGERPRYPG  159 (484)
T ss_pred             CCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEeccCCCceEEEeCEEEEecCCCCCCCC
Confidence              11233333322           2334456799999998877764  3455543 22  36999999999999999999


Q ss_pred             CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCC
Q 016820          179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNP  254 (382)
Q Consensus       179 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~  254 (382)
                      +||......    ........  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+...++.    .....++.|++.
T Consensus       160 ipG~~~~~~----~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~l~~~d~~~~~~l~~~L~~~  233 (484)
T TIGR01438       160 IPGAKELCI----TSDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDCANKVGEHMEEH  233 (484)
T ss_pred             CCCccceee----cHHHhhcc--cccCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEecccccccCHHHHHHHHHHHHHc
Confidence            998754211    11111111  22467899999999999999999999999999998533321    122234567888


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccC-CCceeeCCCCCc
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHS-DGYIITKPGTTH  330 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~-~g~i~vd~~~~~  330 (382)
                      ||+++++..+.++...+++   ..+++.+  .++..++++|.+++++|++|++..+.   .++.+++ +|++.||+ +++
T Consensus       234 gV~i~~~~~v~~v~~~~~~---~~v~~~~--~~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~-~~~  307 (484)
T TIGR01438       234 GVKFKRQFVPIKVEQIEAK---VKVTFTD--STNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADE-EEQ  307 (484)
T ss_pred             CCEEEeCceEEEEEEcCCe---EEEEEec--CCcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCC-Ccc
Confidence            9999999999999876542   1244433  11134799999999999999998643   4666765 59999998 788


Q ss_pred             CCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       331 t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+.|+|||+|||+...+..++.|..||+.+|+||..
T Consensus       308 Ts~p~IyA~GDv~~~~~~l~~~A~~~g~~aa~~i~~  343 (484)
T TIGR01438       308 TNVPYIYAVGDILEDKQELTPVAIQAGRLLAQRLFS  343 (484)
T ss_pred             cCCCCEEEEEEecCCCccchHHHHHHHHHHHHHHhc
Confidence            999999999999865567888999999999999963

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=100.00  E-value=2e-34  Score=277.85  Aligned_cols=294  Identities=29%  Similarity=0.394  Sum_probs=216.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...++|+|||||++|+++|..|++.|++|+|+|    .....||.+..        ++|......++.++..+.+.++|+
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv  205 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLARKGYDVTIFE----ARDKAGGLLRY--------GIPEFRLPKDIVDREVERLLKLGV  205 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEc----cCCCCCcEeec--------cCCCccCCHHHHHHHHHHHHHcCC
Confidence            346899999999999999999999999999999    44456666543        122223446777888888888999


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCcccc-CCCcceeeeccC---CCCCCCCCcEEE
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFW-NRGISACAVCDG---AAPIFRDKPLAV  210 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~~v~V  210 (382)
                      +++.++....     .  +..++..+.||+||+|||+. |+.+++||.+... ............   ......+++|+|
T Consensus       206 ~~~~~~~v~~-----~--v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~~~~~~g~~VvV  278 (457)
T PRK11749        206 EIRTNTEVGR-----D--ITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVADYDLPVGKRVVV  278 (457)
T ss_pred             EEEeCCEECC-----c--cCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhccccccCCCCCeEEE
Confidence            9988854311     1  11122237899999999995 7777888865310 000000111000   011236899999


Q ss_pred             EcCCchHHHHHHHHhhcCC-EEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec---
Q 016820          211 IGGGDSAMEEANFLTKYGS-KVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL---  284 (382)
Q Consensus       211 vG~G~~a~e~a~~l~~~g~-~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~---  284 (382)
                      ||+|.+|+|+|..+.+.|. +|+++++.+.  ++...... +.+++.||++++++.+.++..++++  +.+|.+...   
T Consensus       279 iGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~~~~~~~~~~~-~~~~~~GV~i~~~~~v~~i~~~~~~--~~~v~~~~~~~~  355 (457)
T PRK11749        279 IGGGNTAMDAARTAKRLGAESVTIVYRRGREEMPASEEEV-EHAKEEGVEFEWLAAPVEILGDEGR--VTGVEFVRMELG  355 (457)
T ss_pred             ECCCHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-HHHHHCCCEEEecCCcEEEEecCCc--eEEEEEEEEEec
Confidence            9999999999999999987 8999998754  23333333 4567789999999999999876543  234555422   


Q ss_pred             -----------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHH
Q 016820          285 -----------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAV  351 (382)
Q Consensus       285 -----------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~  351 (382)
                                 .++++.++++|.|++++|++|+..++.  .++.++++|++.+|+.+++|+.|+|||+|||+.. ++++.
T Consensus       356 ~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~~l~~~~~gl~~~~~g~i~vd~~~~~Ts~~~VfA~GD~~~~-~~~~~  434 (457)
T PRK11749        356 EPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNPLILSTTPGLELNRWGTIIADDETGRTSLPGVFAGGDIVTG-AATVV  434 (457)
T ss_pred             CcCCCCCcccCCCCceEEEECCEEEECccCCCCchhhccccCccCCCCCCEEeCCCCCccCCCCEEEeCCcCCC-chHHH
Confidence                       123456899999999999999987654  3577888999999986789999999999999953 57899


Q ss_pred             HHHhhHHHHHHHHHHHHHHcc
Q 016820          352 TAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       352 ~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      .|+.+|+.+|.+|.++|.++.
T Consensus       435 ~A~~~G~~aA~~I~~~l~g~~  455 (457)
T PRK11749        435 WAVGDGKDAAEAIHEYLEGAA  455 (457)
T ss_pred             HHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999998753

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=100.00  E-value=6.4e-35  Score=295.75  Aligned_cols=288  Identities=19%  Similarity=0.245  Sum_probs=212.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc----CCCeEEEecccCCCCCCC-cceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGWMANDIAPG-GQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR  132 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~~~~~g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
                      +++|||||+|+||+.+|..|.++    +++|+||++..    ... ....       ++.+......+++.....+++++
T Consensus         3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~----~~~Y~r~~-------L~~~~~~~~~~~l~~~~~~~~~~   71 (847)
T PRK14989          3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEP----RIAYDRVH-------LSSYFSHHTAEELSLVREGFYEK   71 (847)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCC----CCcccCCc-------chHhHcCCCHHHccCCCHHHHHh
Confidence            35899999999999999999865    47999999531    111 1111       11111112334554445566778


Q ss_pred             cCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcE
Q 016820          133 FGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPL  208 (382)
Q Consensus       133 ~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v  208 (382)
                      .|++++.+ .|..|+.+.+.+.. .++..+.||+||+|||++|+.|++||.+.   +..+.+.+.......  ...++++
T Consensus        72 ~gI~~~~g~~V~~Id~~~~~V~~-~~G~~i~yD~LVIATGs~p~~p~ipG~~~~~v~~~rt~~d~~~l~~~--~~~~k~v  148 (847)
T PRK14989         72 HGIKVLVGERAITINRQEKVIHS-SAGRTVFYDKLIMATGSYPWIPPIKGSETQDCFVYRTIEDLNAIEAC--ARRSKRG  148 (847)
T ss_pred             CCCEEEcCCEEEEEeCCCcEEEE-CCCcEEECCEEEECCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHH--HhcCCeE
Confidence            89999998 69999987654433 24557999999999999999999999764   222333333222222  2356899


Q ss_pred             EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                      +|||+|.+|+|+|..|.++|.+|+++++.+.+..      .....++.+++.||+++++..+.+|..++.+. ...+.+.
T Consensus       149 vVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll~~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~-~~~v~~~  227 (847)
T PRK14989        149 AVVGGGLLGLEAAGALKNLGVETHVIEFAPMLMAEQLDQMGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEA-RKTMRFA  227 (847)
T ss_pred             EEECCCHHHHHHHHHHHHcCCeEEEEeccccchhhhcCHHHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCc-eEEEEEC
Confidence            9999999999999999999999999999887532      12334567888999999999999998654221 2234443


Q ss_pred             eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHH
Q 016820          283 NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGC  358 (382)
Q Consensus       283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~  358 (382)
                      +   +  .++++|.+++++|.+|++.++. .++.++++|+|.||+ +++|++|||||+|||+...   ...+..|..||+
T Consensus       228 d---G--~~i~~D~Vv~A~G~rPn~~L~~~~Gl~~~~~G~I~VD~-~l~Ts~p~IYAiGD~a~~~~~~~gl~~~a~~~a~  301 (847)
T PRK14989        228 D---G--SELEVDFIVFSTGIRPQDKLATQCGLAVAPRGGIVIND-SCQTSDPDIYAIGECASWNNRVFGLVAPGYKMAQ  301 (847)
T ss_pred             C---C--CEEEcCEEEECCCcccCchHHhhcCccCCCCCcEEECC-CCcCCCCCEEEeecceeEcCcccccHHHHHHHHH
Confidence            2   3  5799999999999999998775 578888999999998 7889999999999999642   346778888999


Q ss_pred             HHHHHHHH
Q 016820          359 MAALEAEH  366 (382)
Q Consensus       359 ~aa~~i~~  366 (382)
                      .+|.+|..
T Consensus       302 vaa~~i~g  309 (847)
T PRK14989        302 VAVDHLLG  309 (847)
T ss_pred             HHHHHhcC
Confidence            88888753

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=100.00  E-value=2.4e-34  Score=271.08  Aligned_cols=284  Identities=19%  Similarity=0.227  Sum_probs=206.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH-HHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD-RCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gi  135 (382)
                      ++|||||||+||+.+|..|+++  ..+|+||++....      .+..+ ....  .+.......++.. ...++++++|+
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~------~y~~~-~l~~--~~~~~~~~~~~~~~~~~~~~~~~gv   73 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGD------EYNKP-DLSH--VFSQGQRADDLTRQSAGEFAEQFNL   73 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCC------CcCcC-cCcH--HHhCCCCHHHhhcCCHHHHHHhCCC
Confidence            5899999999999999999886  4689999853110      00000 0000  0112234445554 35566778899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc-ccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA-FWNRGISACAVCDGAAPIFRDKPLAVIGG  213 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  213 (382)
                      +++.+ +|+.++.+++.  +.+++..+.||+||+|||++|..|+++|.+. +..+.+..+......  ...+++++|||+
T Consensus        74 ~~~~~~~V~~id~~~~~--v~~~~~~~~yd~LVlATG~~~~~p~i~G~~~v~~~~~~~~~~~~~~~--~~~~~~vvViGg  149 (377)
T PRK04965         74 RLFPHTWVTDIDAEAQV--VKSQGNQWQYDKLVLATGASAFVPPIPGRELMLTLNSQQEYRAAETQ--LRDAQRVLVVGG  149 (377)
T ss_pred             EEECCCEEEEEECCCCE--EEECCeEEeCCEEEECCCCCCCCCCCCCCceEEEECCHHHHHHHHHH--hhcCCeEEEECC
Confidence            99877 79999987764  4456778999999999999999999999754 111222222222222  335789999999


Q ss_pred             CchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC
Q 016820          214 GDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG  287 (382)
Q Consensus       214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~  287 (382)
                      |++|+|+|..|.+.+.+|+++++.+.+..      ......+.+++.||+++.++.+.++..++++   ..+.+.     
T Consensus       150 G~~g~e~A~~L~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~-----  221 (377)
T PRK04965        150 GLIGTELAMDLCRAGKAVTLVDNAASLLASLMPPEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG---IRATLD-----  221 (377)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEecCCcccchhCCHHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE---EEEEEc-----
Confidence            99999999999999999999999886531      1222345677889999999999999886543   123332     


Q ss_pred             ceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHHHHH
Q 016820          288 QVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMAALE  363 (382)
Q Consensus       288 ~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~aa~~  363 (382)
                      ++.++++|.+++|+|.+|+..++. .++..+ + ++.||+ +++|+.|||||+|||+...   ...+..|+.||+.+|+|
T Consensus       222 ~g~~i~~D~vI~a~G~~p~~~l~~~~gl~~~-~-gi~vd~-~l~ts~~~VyA~GD~a~~~~~~~~~~~~a~~~g~~~a~n  298 (377)
T PRK04965        222 SGRSIEVDAVIAAAGLRPNTALARRAGLAVN-R-GIVVDS-YLQTSAPDIYALGDCAEINGQVLPFLQPIQLSAMALAKN  298 (377)
T ss_pred             CCcEEECCEEEECcCCCcchHHHHHCCCCcC-C-CEEECC-CcccCCCCEEEeeecEeECCceeehHHHHHHHHHHHHHH
Confidence            235799999999999999998775 455554 3 489998 7889999999999998532   23566789999999999


Q ss_pred             HHH
Q 016820          364 AEH  366 (382)
Q Consensus       364 i~~  366 (382)
                      |..
T Consensus       299 ~~g  301 (377)
T PRK04965        299 LLG  301 (377)
T ss_pred             hcC
Confidence            864

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=100.00  E-value=6.6e-34  Score=290.90  Aligned_cols=290  Identities=25%  Similarity=0.327  Sum_probs=219.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||||||+||..|++.|++|+|+|    .....||.+.+        ++|......++.++..+.+++.|++
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE----~~~~~GG~l~y--------GIP~~rlp~~vi~~~i~~l~~~Gv~  372 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFE----AFHDLGGVLRY--------GIPEFRLPNQLIDDVVEKIKLLGGR  372 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe----eCCCCCceEEc--------cCCCCcChHHHHHHHHHHHHhhcCe
Confidence            46899999999999999999999999999999    55678888764        4555566778888888888999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCC-CCcCCCCCCCccccCCCccee-eec----------c---CCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGA-VAKKLQFPGSDAFWNRGISAC-AVC----------D---GAA  200 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~~~~~~-~~~----------~---~~~  200 (382)
                      ++.+.....+       +..++ ....||+||+|||+ .|+.+++||.+.   ..++.. .+.          .   ...
T Consensus       373 f~~n~~vG~d-------it~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl---~GV~~a~dfL~~~~~~~~~~~~~~~~~  442 (944)
T PRK12779        373 FVKNFVVGKT-------ATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL---LGVMSANEFLTRVNLMRGLDDDYETPL  442 (944)
T ss_pred             EEEeEEeccE-------EeHHHhccccCCEEEEeCCCCCCCcCCCCCCcC---cCcEEHHHHHHHHHhhccccccccccc
Confidence            9988643322       22222 23579999999999 589999999764   111110 000          0   010


Q ss_pred             CCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          201 PIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      ....+++|+|||+|++|+++|..+.++|.+|+++++++.  ++......+.. .++||+++++..+.++..++++..+.+
T Consensus       443 ~~~~Gk~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~~~mpa~~~e~~~a-~eeGV~~~~~~~p~~i~~d~~~~~V~~  521 (944)
T PRK12779        443 PEVKGKEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTKSEMPARVEELHHA-LEEGINLAVLRAPREFIGDDHTHFVTH  521 (944)
T ss_pred             cccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCcccccccHHHHHHH-HHCCCEEEeCcceEEEEecCCCCEEEE
Confidence            123579999999999999999999999999999998764  23233333333 357999999999999987654433554


Q ss_pred             EEEEec--------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820          279 LKVKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV  342 (382)
Q Consensus       279 v~~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~  342 (382)
                      +++..+              .+++...+++|.||+++|++|+..+..  .++..+++|.+.+|+..++|+.|+|||+|||
T Consensus       522 v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~~~~~Ts~pgVFAaGD~  601 (944)
T PRK12779        522 ALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEKGSQRTSIKGVYSGGDA  601 (944)
T ss_pred             EEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCcCCChhhhhcccCceECCCCCEEECCCCCccCCCCEEEEEcC
Confidence            444210              124446799999999999999876543  3577888999999987789999999999999


Q ss_pred             CCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          343 QDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       343 ~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +.. +.++..|+.+|+.||.+|.++|.-
T Consensus       602 ~~G-~~~vv~Ai~eGr~AA~~I~~~L~~  628 (944)
T PRK12779        602 ARG-GSTAIRAAGDGQAAAKEIVGEIPF  628 (944)
T ss_pred             CCC-hHHHHHHHHHHHHHHHHHHHHhcc
Confidence            974 568999999999999999999874

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=100.00  E-value=1.1e-33  Score=273.76  Aligned_cols=288  Identities=24%  Similarity=0.304  Sum_probs=210.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C--CCC---CCCCC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F--PGF---PQGIL  118 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~--~~~---~~~~~  118 (382)
                      +||+|||||++|+++|..|++.|.+|+|||    + ..+||++....+.+.               .  .++   .....
T Consensus         2 yDvvVIG~G~aGl~aA~~la~~G~~v~lie----~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~   76 (461)
T TIGR01350         2 YDVVVIGGGPGGYVAAIRAAQLGLKVALVE----K-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVD   76 (461)
T ss_pred             ccEEEECCCHHHHHHHHHHHhCCCeEEEEe----c-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCC
Confidence            799999999999999999999999999999    4 467887664332111               0  011   01122


Q ss_pred             hHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCC-CCcc
Q 016820          119 GGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFP-GSDA  184 (382)
Q Consensus       119 ~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~-g~~~  184 (382)
                      ...+.++           +....++.+++++.+++..++  .+.+.+...+  .+++||+||+|||++|+.|++| +.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~d~lVlAtG~~p~~~~~~~~~~~  154 (461)
T TIGR01350        77 WEKMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLD--PGTVLVTGENGEETLTAKNIIIATGSRPRSLPGPFDFDG  154 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCEEEEecCCCcEEEEeCEEEEcCCCCCCCCCCCCCCCC
Confidence            3333322           223445668999999877665  4456665543  4699999999999999888775 3221


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~  259 (382)
                         ..+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..     ......+.+++.||+++
T Consensus       155 ---~~~~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~~~l~~~gi~i~  229 (461)
T TIGR01350       155 ---EVVITSTGALNL--KEVPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILPGEDAEVSKVVAKALKKKGVKIL  229 (461)
T ss_pred             ---ceEEcchHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence               112222211121  23468999999999999999999999999999999886532     12222456778899999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh--hhc-ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK--FVD-GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      .++++.+++.++++     +.+... .++...+++|.+++++|.+|+..  .+. .++..+++|++.||+ +++|+.|+|
T Consensus       230 ~~~~v~~i~~~~~~-----v~v~~~-~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~l~t~~~~I  302 (461)
T TIGR01350       230 TNTKVTAVEKNDDQ-----VVYENK-GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDE-YMRTNVPGI  302 (461)
T ss_pred             eCCEEEEEEEeCCE-----EEEEEe-CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCC-CcccCCCCE
Confidence            99999999876543     444331 13335799999999999999988  333 567788899999998 788999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ||+|||+.. +..+..|+.||+.+|.+|..
T Consensus       303 yaiGD~~~~-~~~~~~A~~~g~~aa~~i~~  331 (461)
T TIGR01350       303 YAIGDVIGG-PMLAHVASHEGIVAAENIAG  331 (461)
T ss_pred             EEeeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence            999999974 57899999999999999974

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=100.00  E-value=9.5e-34  Score=273.22  Aligned_cols=284  Identities=21%  Similarity=0.264  Sum_probs=206.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cCCCCC-----CCC
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NFPGFP-----QGI  117 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~~~~~-----~~~  117 (382)
                      +|+|||||++|+.+|..+++.|.+|+|||+.     ..||.|....+.+                 ...+.+     ...
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~~-----~~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~   76 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDEA-----DLGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISI   76 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC-----cccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCcc
Confidence            7999999999999999999999999999953     3666665432221                 000111     123


Q ss_pred             ChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          118 LGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       118 ~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      +...+..+.           ...+++.+++++.+++..++  ++.+.+..++  .+++||+||+|||++|+.+++++.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~~~~~~~~d~lviATGs~p~~~p~~~~~~  154 (458)
T PRK06912         77 DWKQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFET--DHRVRVEYGDKEEVVDAEQFIIAAGSEPTELPFAPFDG  154 (458)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcc--CCEEEEeeCCCcEEEECCEEEEeCCCCCCCCCCCCCCC
Confidence            344443332           22344568999999887776  4455565433  36999999999999998877776543


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~~~gv~~~  259 (382)
                      .   .+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+...     .....+.+++.||+++
T Consensus       155 ~---~v~~~~~~~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~~~d~e~~~~l~~~L~~~GI~i~  229 (458)
T PRK06912        155 K---WIINSKHAMSL--PSIPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLPGEDEDIAHILREKLENDGVKIF  229 (458)
T ss_pred             C---eEEcchHHhCc--cccCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCccccHHHHHHHHHHHHHCCCEEE
Confidence            1   11112211222  234689999999999999999999999999999998876321     1222456778899999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      +++++.+++.++..     +.+..  +++..++++|.+++++|.+|+...+.   .++..+++| +.||+ .++|+.|||
T Consensus       230 ~~~~V~~i~~~~~~-----v~~~~--~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~~g-i~Vd~-~~~ts~~~V  300 (458)
T PRK06912        230 TGAALKGLNSYKKQ-----ALFEY--EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSNKG-ISVNE-HMQTNVPHI  300 (458)
T ss_pred             ECCEEEEEEEcCCE-----EEEEE--CCceEEEEeCEEEEecCCccCCCCCCchhcCceecCCC-EEeCC-CeecCCCCE
Confidence            99999999876542     44443  23335799999999999999987542   356666666 99998 788999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ||+|||.+ .++.++.|+.+|+.+|.++.
T Consensus       301 yA~GD~~~-~~~la~~A~~~g~~aa~~~~  328 (458)
T PRK06912        301 YACGDVIG-GIQLAHVAFHEGTTAALHAS  328 (458)
T ss_pred             EEEeecCC-CcccHHHHHHHHHHHHHHHc
Confidence            99999997 36789999999999999985

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=100.00  E-value=5e-34  Score=275.92  Aligned_cols=289  Identities=23%  Similarity=0.274  Sum_probs=202.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC------------------CCCC--CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF------------------PGFP--QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~------------------~~~~--~~~  117 (382)
                      .+||+|||||++|+++|..|+++|.+|+|||+.     ..||.+....+.+..                  .+..  ...
T Consensus         4 ~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-----~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~   78 (466)
T PRK07818          4 HYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-----YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTF   78 (466)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-----CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCccc
Confidence            489999999999999999999999999999952     567776654332110                  0000  011


Q ss_pred             ChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          118 LGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       118 ~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ....+..+.           ....+..+++.+.++...++  .+.+.+... +  .+++||+||+|||++|+.+  ||.+
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~--pg~~  154 (466)
T PRK07818         79 DYGAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTD--ANTLEVDLNDGGTETVTFDNAIIATGSSTRLL--PGTS  154 (466)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcC--CCEEEEEecCCCeeEEEcCEEEEeCCCCCCCC--CCCC
Confidence            222222221           11222346777766544444  445555532 2  3599999999999999764  5543


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV  258 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~  258 (382)
                      .. .. +....  ........+++++|||+|.+|+|+|..|.++|.+|+++.+.+.+..     ......+.+++.||++
T Consensus       155 ~~-~~-v~~~~--~~~~~~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~gV~i  230 (466)
T PRK07818        155 LS-EN-VVTYE--EQILSRELPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALPNEDAEVSKEIAKQYKKLGVKI  230 (466)
T ss_pred             CC-Cc-EEchH--HHhccccCCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCCccCHHHHHHHHHHHHHCCCEE
Confidence            10 11 11111  1111123468999999999999999999999999999998876532     1222345677889999


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCc
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      ++++++.+++.++++   ..+.+.. .+++...+++|.+++++|++|++..+   ..++.++++|++.||+ +++|+.|+
T Consensus       231 ~~~~~v~~i~~~~~~---~~v~~~~-~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~-~~~Ts~p~  305 (466)
T PRK07818        231 LTGTKVESIDDNGSK---VTVTVSK-KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDD-YMRTNVPH  305 (466)
T ss_pred             EECCEEEEEEEeCCe---EEEEEEe-cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCC-CcccCCCC
Confidence            999999999876542   1233431 12444579999999999999999854   2567788889999998 78899999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |||+|||++. +++++.|+.||+.+|.||+
T Consensus       306 IyAiGD~~~~-~~l~~~A~~~g~~aa~~i~  334 (466)
T PRK07818        306 IYAIGDVTAK-LQLAHVAEAQGVVAAETIA  334 (466)
T ss_pred             EEEEeecCCC-cccHhHHHHHHHHHHHHHc
Confidence            9999999974 6799999999999999996

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=7.2e-35  Score=253.16  Aligned_cols=304  Identities=34%  Similarity=0.556  Sum_probs=268.5

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ....+||+||||||||-++|.+.+|.|.+.-|+-.      ..||+..-+-.+.+|-..| ...++.+...+++..+++.
T Consensus       208 ~k~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~ae------rfGGQvldT~~IENfIsv~-~teGpkl~~ale~Hv~~Y~  280 (520)
T COG3634         208 AKDAYDVLVVGGGPAGAAAAIYAARKGIRTGLVAE------RFGGQVLDTMGIENFISVP-ETEGPKLAAALEAHVKQYD  280 (520)
T ss_pred             ccCCceEEEEcCCcchhHHHHHHHhhcchhhhhhh------hhCCeeccccchhheeccc-cccchHHHHHHHHHHhhcC
Confidence            34579999999999999999999999999877742      6788888787888887665 3577889999999999999


Q ss_pred             cEEEEe-eEEEEEec---CCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEE
Q 016820          135 TQIFTE-TVSKVDFK---SRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLA  209 (382)
Q Consensus       135 i~~~~~-~v~~i~~~---~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~  209 (382)
                      +++... +++.+.+.   ++.+.++..+ -.+.++.+|++||.+=+...+||.++|..+.+.+|+.|++.  .+.+|+|+
T Consensus       281 vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGP--LF~gK~VA  358 (520)
T COG3634         281 VDVMNLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGP--LFKGKRVA  358 (520)
T ss_pred             chhhhhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCc--ccCCceEE
Confidence            998777 67777764   3445666644 46899999999999888889999999999999999999999  89999999


Q ss_pred             EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820          210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV  289 (382)
Q Consensus       210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~  289 (382)
                      |||+|++|+|.|-.|+-.-.+||++.-.+.+....-+++++..-.+++++.+..-++|..+++.  +.++...+..+++.
T Consensus       359 VIGGGNSGvEAAIDLAGiv~hVtllEF~~eLkAD~VLq~kl~sl~Nv~ii~na~Ttei~Gdg~k--V~Gl~Y~dr~sge~  436 (520)
T COG3634         359 VIGGGNSGVEAAIDLAGIVEHVTLLEFAPELKADAVLQDKLRSLPNVTIITNAQTTEVKGDGDK--VTGLEYRDRVSGEE  436 (520)
T ss_pred             EECCCcchHHHHHhHHhhhheeeeeecchhhhhHHHHHHHHhcCCCcEEEecceeeEEecCCce--ecceEEEeccCCce
Confidence            9999999999999999877899999999999888888877777889999999999999998653  77788888777878


Q ss_pred             EEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          290 SDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       290 ~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ..+.-+-|+.-.|..||+.+++..+.+++.|-|.||. ...|+.|+|||+|||...+++++..++..|..|+...-.||.
T Consensus       437 ~~l~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~-~g~TsvpGvFAAGD~T~~~yKQIIIamG~GA~AaL~AFDyLI  515 (520)
T COG3634         437 HHLELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDA-RGETNVPGVFAAGDCTTVPYKQIIIAMGEGAKASLSAFDYLI  515 (520)
T ss_pred             eEEEeeeeEEEEecccChhHhhchhhcCcCccEEEec-CCCcCCCceeecCcccCCccceEEEEecCcchhhhhhhhhhe
Confidence            8899999999999999999999778999999999999 899999999999999998899999999999999999998887


Q ss_pred             H
Q 016820          370 E  370 (382)
Q Consensus       370 ~  370 (382)
                      .
T Consensus       516 R  516 (520)
T COG3634         516 R  516 (520)
T ss_pred             e
Confidence            6

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=100.00  E-value=2.7e-34  Score=272.24  Aligned_cols=285  Identities=17%  Similarity=0.170  Sum_probs=196.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .++|||||||+||+++|..|+++|.  +|+|++++....   .......   ..+...+   ..+.....-.+...+.++
T Consensus         3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~---y~r~~l~---~~~~~~~---~~~~~~~~~~~~~~~~~i   73 (396)
T PRK09754          3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLP---YERPPLS---KSMLLED---SPQLQQVLPANWWQENNV   73 (396)
T ss_pred             cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCC---CCCCCCC---HHHHCCC---CccccccCCHHHHHHCCC
Confidence            4689999999999999999999976  799999531110   0000000   0000000   000000001233456799


Q ss_pred             EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      +++.+ .|..++.+++.+.+. ++..+.||+||+|||++|+.+++++...   +..+...+.......  ...+++++||
T Consensus        74 ~~~~g~~V~~id~~~~~v~~~-~g~~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~--~~~~~~vvVi  150 (396)
T PRK09754         74 HLHSGVTIKTLGRDTRELVLT-NGESWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREV--LQPERSVVIV  150 (396)
T ss_pred             EEEcCCEEEEEECCCCEEEEC-CCCEEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHH--hhcCCeEEEE
Confidence            99988 699999887655443 4567999999999999998777665432   111222222222222  2357899999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV  285 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~  285 (382)
                      |+|.+|+|+|..|.+.|.+||++++.+.+..   .   .....+.+++.||+++.++.+.+++.++.      +.+..  
T Consensus       151 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~------~~v~l--  222 (396)
T PRK09754        151 GAGTIGLELAASATQRRCKVTVIELAATVMGRNAPPPVQRYLLQRHQQAGVRILLNNAIEHVVDGEK------VELTL--  222 (396)
T ss_pred             CCCHHHHHHHHHHHHcCCeEEEEecCCcchhhhcCHHHHHHHHHHHHHCCCEEEeCCeeEEEEcCCE------EEEEE--
Confidence            9999999999999999999999999886531   1   12233556778999999999999987321      23332  


Q ss_pred             CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch--------hhHHHHHHhh
Q 016820          286 TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK--------YRQAVTAAGT  356 (382)
Q Consensus       286 ~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~--------~~~~~~a~~~  356 (382)
                       .++..+++|.+++++|.+|++.++. .++.  .++++.||+ +++|++|||||+|||+..+        ...+..|..|
T Consensus       223 -~~g~~i~aD~Vv~a~G~~pn~~l~~~~gl~--~~~gi~vd~-~~~ts~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~q  298 (396)
T PRK09754        223 -QSGETLQADVVIYGIGISANDQLAREANLD--TANGIVIDE-ACRTCDPAIFAGGDVAITRLDNGALHRCESWENANNQ  298 (396)
T ss_pred             -CCCCEEECCEEEECCCCChhhHHHHhcCCC--cCCCEEECC-CCccCCCCEEEccceEeeeCCCCCEEEECcHHHHHHH
Confidence             2235799999999999999988765 3443  346799998 6889999999999998521        2456889999


Q ss_pred             HHHHHHHHHH
Q 016820          357 GCMAALEAEH  366 (382)
Q Consensus       357 g~~aa~~i~~  366 (382)
                      |+.+|+||..
T Consensus       299 g~~aa~ni~g  308 (396)
T PRK09754        299 AQIAAAAMLG  308 (396)
T ss_pred             HHHHHHHhcC
Confidence            9999999974

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=100.00  E-value=5.6e-33  Score=273.52  Aligned_cols=295  Identities=20%  Similarity=0.223  Sum_probs=205.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cC-----CCC----
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NF-----PGF----  113 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~-----~~~----  113 (382)
                      ++||+|||+|++|+.+|..++++|.+|+|||+   ....+||+|....+.+               +.     .++    
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~---~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~  192 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTG---DDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNA  192 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC---CCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeecc
Confidence            68999999999999999999999999999993   2235788766443221               00     011    


Q ss_pred             -----------------CCCCChHHHHHHHHHH-----------HHHcC-------cEEEEeeEEEEEecCCcEEEEECC
Q 016820          114 -----------------PQGILGGDLMDRCRNQ-----------SLRFG-------TQIFTETVSKVDFKSRPFKVFTDS  158 (382)
Q Consensus       114 -----------------~~~~~~~~~~~~~~~~-----------~~~~g-------i~~~~~~v~~i~~~~~~~~v~~~~  158 (382)
                                       ...++...+.++.+..           +++.+       ++++.+...-++  .+.+.+..++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~--~~~v~v~~~g  270 (659)
T PTZ00153        193 FKNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVD--KNTIKSEKSG  270 (659)
T ss_pred             ccccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEec--CCeEEEccCC
Confidence                             0123444444443332           23333       677777654444  3344444345


Q ss_pred             eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          159 KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       159 ~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++.||+||+|||++|..|++++.+.   ..+..+......  ...+++++|||+|.+|+|+|..|.+.|.+||++++.+
T Consensus       271 ~~i~ad~lIIATGS~P~~P~~~~~~~---~~V~ts~d~~~l--~~lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~  345 (659)
T PTZ00153        271 KEFKVKNIIIATGSTPNIPDNIEVDQ---KSVFTSDTAVKL--EGLQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYSP  345 (659)
T ss_pred             EEEECCEEEEcCCCCCCCCCCCCCCC---CcEEehHHhhhh--hhcCCceEEECCCHHHHHHHHHHHhCCCeEEEEeccC
Confidence            67999999999999998887655432   122222222222  2347899999999999999999999999999999988


Q ss_pred             CCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC----------ceEEEecCeEEEeeC
Q 016820          239 SFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG----------QVSDLKVSGLFFAIG  302 (382)
Q Consensus       239 ~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~----------~~~~~~~D~vi~~~G  302 (382)
                      .+..      ...+.+..+++.||+++.++.+.+++.++++..+ .+.+.+..++          +..++++|.+++++|
T Consensus       346 ~ll~~~d~eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~~~~v-~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtG  424 (659)
T PTZ00153        346 QLLPLLDADVAKYFERVFLKSKPVRVHLNTLIEYVRAGKGNQPV-IIGHSERQTGESDGPKKNMNDIKETYVDSCLVATG  424 (659)
T ss_pred             cccccCCHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEE-EEEEeccccccccccccccccceEEEcCEEEEEEC
Confidence            7632      2233322346789999999999999876543211 1222211101          113799999999999


Q ss_pred             CCCChhhhc---ccccccCCCceeeCCCCCcCC------CCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          303 HEPATKFVD---GQLDLHSDGYIITKPGTTHTS------VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       303 ~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~------~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ++|++..+.   .++..+ +|+|.||+ +++|+      +|||||+|||.+. +..++.|..||+.+|++|..
T Consensus       425 r~Pnt~~L~l~~~gi~~~-~G~I~VDe-~lqTs~~~~~~v~~IYAiGDv~g~-~~La~~A~~qg~~aa~ni~g  494 (659)
T PTZ00153        425 RKPNTNNLGLDKLKIQMK-RGFVSVDE-HLRVLREDQEVYDNIFCIGDANGK-QMLAHTASHQALKVVDWIEG  494 (659)
T ss_pred             cccCCccCCchhcCCccc-CCEEeECC-CCCcCCCCCCCCCCEEEEEecCCC-ccCHHHHHHHHHHHHHHHcC
Confidence            999998753   355565 49999999 67776      6999999999974 67899999999999999964

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=100.00  E-value=1.4e-33  Score=281.32  Aligned_cols=297  Identities=26%  Similarity=0.323  Sum_probs=216.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||++|+++|..|++.|++|+|+|    .....||.+..        ++|......++.++..+.+.++|++
T Consensus       192 ~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~Gv~  259 (652)
T PRK12814        192 SGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFD----ANEQAGGMMRY--------GIPRFRLPESVIDADIAPLRAMGAE  259 (652)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCcEEEEe----cCCCCCceeee--------cCCCCCCCHHHHHHHHHHHHHcCCE
Confidence            45799999999999999999999999999999    55567777653        2233334566777777778889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccccC-CCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFWN-RGISACAVCDGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~v~VvG~G  214 (382)
                      ++.++...++.       ..++....||+||+|||+++ ..+++||.+.... .................+++|+|||+|
T Consensus       260 i~~~~~v~~dv-------~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~gk~VvVIGgG  332 (652)
T PRK12814        260 FRFNTVFGRDI-------TLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALGTALHPGKKVVVIGGG  332 (652)
T ss_pred             EEeCCcccCcc-------CHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcCCcccCCCeEEEECCC
Confidence            98886433321       11111235999999999975 5678888653110 111111110101114468999999999


Q ss_pred             chHHHHHHHHhhcCC-EEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec-------
Q 016820          215 DSAMEEANFLTKYGS-KVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL-------  284 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~-~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~-------  284 (382)
                      ++|+|+|..+.++|. +|++++++..  ++.......+.+ ++||+++++..+.++..++++..++.+.+...       
T Consensus       333 ~~a~e~A~~l~~~Ga~~Vtlv~r~~~~~mpa~~~ei~~a~-~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~  411 (652)
T PRK12814        333 NTAIDAARTALRLGAESVTILYRRTREEMPANRAEIEEAL-AEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGR  411 (652)
T ss_pred             HHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHHHHH-HcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCC
Confidence            999999999999985 6999998764  333333333443 57999999999999987654422333333321       


Q ss_pred             -----cCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHH
Q 016820          285 -----VTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC  358 (382)
Q Consensus       285 -----~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~  358 (382)
                           .+++...+++|.||+++|..|++.++. .++.++.+|++.+|+.+++|+.|+|||+||++.. +.++..|+.+|+
T Consensus       412 ~~~~~~~g~~~~i~~D~VI~AiG~~p~~~ll~~~gl~~~~~G~I~vd~~~~~Ts~pgVfA~GDv~~g-~~~v~~Ai~~G~  490 (652)
T PRK12814        412 RRPVPVEGSEFTLQADTVISAIGQQVDPPIAEAAGIGTSRNGTVKVDPETLQTSVAGVFAGGDCVTG-ADIAINAVEQGK  490 (652)
T ss_pred             CcceecCCceEEEECCEEEECCCCcCCcccccccCccccCCCcEeeCCCCCcCCCCCEEEcCCcCCC-chHHHHHHHHHH
Confidence                 023345799999999999999998876 4677888899999987899999999999999863 578899999999


Q ss_pred             HHHHHHHHHHHHccCc
Q 016820          359 MAALEAEHYLQEIGSQ  374 (382)
Q Consensus       359 ~aa~~i~~~l~~~~~~  374 (382)
                      .||.+|.++|.+++..
T Consensus       491 ~AA~~I~~~L~g~~~~  506 (652)
T PRK12814        491 RAAHAIDLFLNGKPVT  506 (652)
T ss_pred             HHHHHHHHHHcCCCCC
Confidence            9999999999987644

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=1.1e-33  Score=287.31  Aligned_cols=293  Identities=23%  Similarity=0.334  Sum_probs=214.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||+||+++|..|++.|++|+|+|    ....+||.+.+        ++|......++.+...+.+.++|++
T Consensus       430 ~~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e----~~~~~GG~l~~--------gip~~rlp~~~~~~~~~~l~~~gv~  497 (752)
T PRK12778        430 NGKKVAVIGSGPAGLSFAGDLAKRGYDVTVFE----ALHEIGGVLKY--------GIPEFRLPKKIVDVEIENLKKLGVK  497 (752)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCeeee--------cCCCCCCCHHHHHHHHHHHHHCCCE
Confidence            46799999999999999999999999999999    44467777653        2333333456677767777889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccc---cCCCcce-----eeeccC-CCCCCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAF---WNRGISA-----CAVCDG-AAPIFRDK  206 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~---~~~~~~~-----~~~~~~-~~~~~~~~  206 (382)
                      ++.++...     +.+++. +.....||+||+|||+ .|+.+++||.+..   .......     ..+... ......++
T Consensus       498 ~~~~~~v~-----~~v~~~-~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk  571 (752)
T PRK12778        498 FETDVIVG-----KTITIE-ELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGK  571 (752)
T ss_pred             EECCCEEC-----CcCCHH-HHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCC
Confidence            98885321     111121 1123669999999999 5998999997631   0000000     000000 01134579


Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      +|+|||+|++|+|+|..+.++|.+ |+++++++..  +...... +.++++||++++++.+.++..+++|+ ++++++..
T Consensus       572 ~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~~~~~~~~~e~-~~~~~~GV~i~~~~~~~~i~~~~~g~-v~~v~~~~  649 (752)
T PRK12778        572 KVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSEEEMPARLEEV-KHAKEEGIEFLTLHNPIEYLADEKGW-VKQVVLQK  649 (752)
T ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHH-HHHHHcCCEEEecCcceEEEECCCCE-EEEEEEEE
Confidence            999999999999999999999987 9999987643  2222222 34667899999999999998766553 55565532


Q ss_pred             c---------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCch
Q 016820          284 L---------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK  346 (382)
Q Consensus       284 ~---------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~  346 (382)
                      .               .++++..+++|.|++++|++|+..++.  .++.++++|++.+|+ .++|+.|+|||+|||+.. 
T Consensus       650 ~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~gVfA~GD~~~g-  727 (752)
T PRK12778        650 MELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPLVPSSIPGLELNRKGTIVVDE-EMQSSIPGIYAGGDIVRG-  727 (752)
T ss_pred             EEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCccccccccCceECCCCCEEeCC-CCCCCCCCEEEeCCccCC-
Confidence            1               123345799999999999999987654  267788889999998 568999999999999864 


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          347 YRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       347 ~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      +.++..|+.+|+.||.+|.++|.++
T Consensus       728 ~~~vv~Av~~G~~AA~~I~~~L~~~  752 (752)
T PRK12778        728 GATVILAMGDGKRAAAAIDEYLSSK  752 (752)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhccC
Confidence            5788999999999999999999764

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=100.00  E-value=3e-33  Score=288.60  Aligned_cols=294  Identities=28%  Similarity=0.368  Sum_probs=219.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||||||++|..|++.|++|+|+|    ....+||.+..        ++|......++.+...+.+.++|++
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E----~~~~~GG~l~~--------gip~~rl~~e~~~~~~~~l~~~Gv~  496 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVKYGVDVTVYE----ALHVVGGVLQY--------GIPSFRLPRDIIDREVQRLVDIGVK  496 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEe----cCCCCcceeec--------cCCccCCCHHHHHHHHHHHHHCCCE
Confidence            35799999999999999999999999999999    45567776653        3344445677888888888999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCccccCCCccee---------------eeccCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDAFWNRGISAC---------------AVCDGAA  200 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~~~~~~---------------~~~~~~~  200 (382)
                      ++.+++...+     +++..-.....||+||+|||+ .|+.+++||.+.   ..++..               .+.... 
T Consensus       497 ~~~~~~vg~~-----~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l---~gV~~a~~fL~~~~~~~~~~~~~~~~~-  567 (1006)
T PRK12775        497 IETNKVIGKT-----FTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFA---GQVYSANEFLTRVNLMGGDKFPFLDTP-  567 (1006)
T ss_pred             EEeCCccCCc-----cCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCC---CCcEEHHHHHHHHHhcCccccccccCC-
Confidence            9988643222     121110012469999999999 589999999653   111111               111112 


Q ss_pred             CCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchHHHH-HHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          201 PIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASKIMQ-NRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                       ...+++|+|||+|++|+++|..+.++|. .|++++++.......... .+.++++||+++++..+.++..+++|+ +.+
T Consensus       568 -~~~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr~~~em~a~~~e~~~a~eeGI~~~~~~~p~~i~~~~~G~-v~~  645 (1006)
T PRK12775        568 -ISLGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRRSEAEAPARIEEIRHAKEEGIDFFFLHSPVEIYVDAEGS-VRG  645 (1006)
T ss_pred             -ccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEecCCcEEEEeCCCCe-EEE
Confidence             3468999999999999999999999986 588888776543322211 134667899999999999998765553 555


Q ss_pred             EEEEec--------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCC----CCCcCCCCceEE
Q 016820          279 LKVKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKP----GTTHTSVPGVFA  338 (382)
Q Consensus       279 v~~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~----~~~~t~~~~vya  338 (382)
                      +++...              .+++...+++|.|++++|++|+..++.  .++.++++|.+.+|+    .+++|+.|+|||
T Consensus       646 v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~~~v~~~~~Ts~pgVFA  725 (1006)
T PRK12775        646 MKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPIITQSTPGLALNKWGNIAADDGKLESTQSTNLPGVFA  725 (1006)
T ss_pred             EEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChhhhhccCCcccCCCCcEEeCCCccccCcCCCCCCEEE
Confidence            655421              123335799999999999999987654  257778889999996    478999999999


Q ss_pred             ecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          339 AGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      +||++.. +.++..|+.+|+.||.+|.++|.+....
T Consensus       726 aGDv~~G-~~~vv~Ai~~Gr~AA~~I~~~L~~~~~~  760 (1006)
T PRK12775        726 GGDIVTG-GATVILAMGAGRRAARSIATYLRLGKKW  760 (1006)
T ss_pred             ecCcCCC-ccHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            9999864 5788999999999999999999976543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=100.00  E-value=4.6e-33  Score=259.73  Aligned_cols=296  Identities=27%  Similarity=0.340  Sum_probs=207.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|++.|++|++||    ....+|+.+...     ++..  ....+.+...+ +.+.+.+++
T Consensus        17 ~~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie----~~~~~gg~~~~~-----~~~~--~~~~~~~~~~~-~~l~~~~i~   84 (352)
T PRK12770         17 TGKKVAIIGAGPAGLAAAGYLACLGYEVHVYD----KLPEPGGLMLFG-----IPEF--RIPIERVREGV-KELEEAGVV   84 (352)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEe----CCCCCCceeeec-----Cccc--ccCHHHHHHHH-HHHHhCCeE
Confidence            45799999999999999999999999999999    444566655421     1111  11233343344 445556999


Q ss_pred             EEEee-EEEEEe----cCCcEEEE---ECCeEEEcCEEEEccCC-CCcCCCCCCCccccC-CCcce----eeeccC----
Q 016820          137 IFTET-VSKVDF----KSRPFKVF---TDSKSVLADTVIVATGA-VAKKLQFPGSDAFWN-RGISA----CAVCDG----  198 (382)
Q Consensus       137 ~~~~~-v~~i~~----~~~~~~v~---~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~-~~~~~----~~~~~~----  198 (382)
                      ++.++ +..++.    ..+.+...   .++..+.||+||+|||+ .|+.|++||.+.... .....    +.....    
T Consensus        85 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~  164 (352)
T PRK12770         85 FHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPW  164 (352)
T ss_pred             EecCcEEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhcccccccc
Confidence            98884 433322    11222111   12224789999999999 478888998653111 10000    000000    


Q ss_pred             -CCCCCCCCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCc--chHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820          199 -AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFR--ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK  274 (382)
Q Consensus       199 -~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~  274 (382)
                       ..+...+++++|+|+|++|+|+|..|.+.|.+ |+++.+++...  ...... +.++++||+++++..+.+++.++.  
T Consensus       165 ~~~~~~~g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~~~~~~~~~~~-~~l~~~gi~i~~~~~v~~i~~~~~--  241 (352)
T PRK12770        165 EKVPPVEGKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTINEAPAGKYEI-ERLIARGVEFLELVTPVRIIGEGR--  241 (352)
T ss_pred             ccccccCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecchhhCCCCHHHH-HHHHHcCCEEeeccCceeeecCCc--
Confidence             11123468999999999999999999988886 99999876432  223443 447788999999999999986542  


Q ss_pred             eeeeEEEEec---------------cCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceE
Q 016820          275 VLGGLKVKNL---------------VTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVF  337 (382)
Q Consensus       275 ~~~~v~~~~~---------------~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vy  337 (382)
                       +..+++...               .++++..+++|.+++++|++|+..+..  .++.++++|++.||+ .++|+.|+||
T Consensus       242 -~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~vy  319 (352)
T PRK12770        242 -VEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDE-KHMTSREGVF  319 (352)
T ss_pred             -EeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCC-CcccCCCCEE
Confidence             444544321               124456899999999999999988765  467778889999998 6789999999


Q ss_pred             EecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          338 AAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      ++|||+.. +..+..|+.+|+.+|.+|.++|..
T Consensus       320 aiGD~~~~-~~~~~~A~~~g~~aa~~i~~~l~~  351 (352)
T PRK12770        320 AAGDVVTG-PSKIGKAIKSGLRAAQSIHEWLDL  351 (352)
T ss_pred             EEcccccC-cchHHHHHHHHHHHHHHHHHHHhc
Confidence            99999874 578999999999999999999864

>TIGR03452 mycothione_red mycothione reductase

Probab=100.00  E-value=1.3e-32  Score=264.40  Aligned_cols=283  Identities=19%  Similarity=0.240  Sum_probs=198.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC---------------C--CCC---CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF---------------P--GFP---QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------------~--~~~---~~~  117 (382)
                      ++|++|||+|++|..+|..  .+|.+|+|||+.     ..||+|....+.+.-               .  ++.   ..+
T Consensus         2 ~yD~vvIG~G~~g~~aa~~--~~g~~V~lie~~-----~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~   74 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPR--FADKRIAIVEKG-----TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSV   74 (452)
T ss_pred             CcCEEEECCCHHHHHHHHH--HCCCeEEEEeCC-----CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCcc
Confidence            4899999999999998654  479999999952     578877655433110               0  111   123


Q ss_pred             ChHHHHHHHHH------------HH---HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCC
Q 016820          118 LGGDLMDRCRN------------QS---LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGS  182 (382)
Q Consensus       118 ~~~~~~~~~~~------------~~---~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~  182 (382)
                      ++..+.++...            ..   ++.|++++.++....+  ...+.+. ++.+++||+||+|||++|..|+..+.
T Consensus        75 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~V~~~-~g~~~~~d~lIiATGs~p~~p~~~~~  151 (452)
T TIGR03452        75 RWPDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVG--PRTLRTG-DGEEITGDQIVIAAGSRPYIPPAIAD  151 (452)
T ss_pred             CHHHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEec--CCEEEEC-CCcEEEeCEEEEEECCCCCCCCCCCC
Confidence            34444433211            11   1268999888755443  3334332 44579999999999999988764332


Q ss_pred             ccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--hHH---HHHHhccCCCcE
Q 016820          183 DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--SKI---MQNRALTNPKID  257 (382)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~~~---~~~~~l~~~gv~  257 (382)
                      ...   ...........  ...+++++|||+|++|+|+|..|.+.|.+|+++++.+.+..  ...   ...+.+ +.+|+
T Consensus       152 ~~~---~~~~~~~~~~l--~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~~~d~~~~~~l~~~~-~~gI~  225 (452)
T TIGR03452       152 SGV---RYHTNEDIMRL--PELPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLRHLDEDISDRFTEIA-KKKWD  225 (452)
T ss_pred             CCC---EEEcHHHHHhh--hhcCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccccccCHHHHHHHHHHH-hcCCE
Confidence            211   01111111111  22468999999999999999999999999999999886521  111   122333 35899


Q ss_pred             EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCC
Q 016820          258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVP  334 (382)
Q Consensus       258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~  334 (382)
                      ++.+.++.+++.++++     +.+.. ..+  .++++|.+++++|++|+..++.   .++.++++|++.||+ +++|+.|
T Consensus       226 i~~~~~V~~i~~~~~~-----v~v~~-~~g--~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~-~~~Ts~~  296 (452)
T TIGR03452       226 IRLGRNVTAVEQDGDG-----VTLTL-DDG--STVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDE-YGRTSAR  296 (452)
T ss_pred             EEeCCEEEEEEEcCCe-----EEEEE-cCC--CEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCC-CcccCCC
Confidence            9999999999876543     33433 113  4799999999999999998754   467888899999998 6789999


Q ss_pred             ceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       335 ~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +|||+|||++. ++.++.|.+||+.+|+||..
T Consensus       297 ~IyA~GD~~~~-~~l~~~A~~~g~~~a~ni~~  327 (452)
T TIGR03452       297 GVWALGDVSSP-YQLKHVANAEARVVKHNLLH  327 (452)
T ss_pred             CEEEeecccCc-ccChhHHHHHHHHHHHHhcC
Confidence            99999999974 57889999999999999964

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=100.00  E-value=1.6e-32  Score=265.00  Aligned_cols=290  Identities=26%  Similarity=0.296  Sum_probs=210.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||++|+++|..|++.|++|+|||    .....||.+..        ++|......++.....+.+.++|++
T Consensus       142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~~~~~gv~  209 (471)
T PRK12810        142 TGKKVAVVGSGPAGLAAADQLARAGHKVTVFE----RADRIGGLLRY--------GIPDFKLEKEVIDRRIELMEAEGIE  209 (471)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCcEEEEe----cCCCCCceeee--------cCCcccCCHHHHHHHHHHHHhCCcE
Confidence            45799999999999999999999999999999    44556766543        2333334456677777778889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCccee-ee-------------ccCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISAC-AV-------------CDGAAP  201 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~-~~-------------~~~~~~  201 (382)
                      ++.++....+...       +.....||+||+|||+. |+.+.+||.+.   ..++.. .+             ....  
T Consensus       210 ~~~~~~v~~~~~~-------~~~~~~~d~vvlAtGa~~~~~l~ipG~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~--  277 (471)
T PRK12810        210 FRTNVEVGKDITA-------EELLAEYDAVFLGTGAYKPRDLGIPGRDL---DGVHFAMDFLIQNTRRVLGDETEPFI--  277 (471)
T ss_pred             EEeCCEECCcCCH-------HHHHhhCCEEEEecCCCCCCcCCCCCccC---CCcEEHHHHHHHHHhhhccccccccc--
Confidence            9988644332111       11225799999999997 77888888653   111111 00             0111  


Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchH-----------HHHHHhccCCCcEEEcCceeEEEEe
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASK-----------IMQNRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~-----------~~~~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      ...+++|+|||+|++|+|+|..+.+.|. +|+.+.+.+......           .+..+.+.+.||+++++..+.++..
T Consensus       278 ~~~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GV~i~~~~~~~~i~~  357 (471)
T PRK12810        278 SAKGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIMPMPPSRRNKNNPWPYWPMKLEVSNAHEEGVEREFNVQTKEFEG  357 (471)
T ss_pred             cCCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEccccCCCccccccccCCcccchHHHHHHHHHcCCeEEeccCceEEEc
Confidence            3457999999999999999998888875 788665544322111           0112345668999999999999976


Q ss_pred             cCCceeeeeEEEEecc---------CCceEEEecCeEEEeeCCCCChh-hhc-ccccccCCCceeeCCCCCcCCCCceEE
Q 016820          270 EGDKKVLGGLKVKNLV---------TGQVSDLKVSGLFFAIGHEPATK-FVD-GQLDLHSDGYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~---------~~~~~~~~~D~vi~~~G~~p~~~-~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya  338 (382)
                      +++  .+.+|++....         +++...+++|.||+++|.+|+.. ++. .++.++++|++.+|+.+++|+.|+|||
T Consensus       358 ~~g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa  435 (471)
T PRK12810        358 ENG--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFA  435 (471)
T ss_pred             cCC--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEE
Confidence            432  25556554211         23446799999999999999853 554 467788889999985478899999999


Q ss_pred             ecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820          339 AGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~  373 (382)
                      +|||+.. +.++..|+.+|+.||.+|.++|.++.+
T Consensus       436 ~GD~~~g-~~~~~~Av~~G~~AA~~i~~~L~g~~~  469 (471)
T PRK12810        436 AGDMRRG-QSLVVWAIAEGRQAARAIDAYLMGSTA  469 (471)
T ss_pred             ccccCCC-chhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            9999974 567889999999999999999987554

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=100.00  E-value=3.4e-33  Score=283.60  Aligned_cols=281  Identities=21%  Similarity=0.274  Sum_probs=206.6

Q ss_pred             EEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCcE
Q 016820           61 VCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        61 vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      |||||+|+||+++|.+|+++   +++|+|||+..    ..+....      .++.+. .....+++.....+++++.+++
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~----~~~y~r~------~L~~~l~g~~~~~~l~~~~~~~~~~~gv~   70 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEP----HPNYNRI------LLSSVLQGEADLDDITLNSKDWYEKHGIT   70 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCC----CCCcccc------cccHHHCCCCCHHHccCCCHHHHHHCCCE
Confidence            69999999999999999876   47999999531    2111000      011111 1223445554556667788999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      ++.+ +|+.|+++++.+.+. ++.++.||+||+|||+.|+.|++||.+.   +..+.+.++......  ...+++++|||
T Consensus        71 ~~~g~~V~~Id~~~k~V~~~-~g~~~~yD~LVlATGs~p~~p~ipG~~~~~v~~~rt~~d~~~i~~~--~~~~k~vvVVG  147 (785)
T TIGR02374        71 LYTGETVIQIDTDQKQVITD-AGRTLSYDKLILATGSYPFILPIPGADKKGVYVFRTIEDLDAIMAM--AQRFKKAAVIG  147 (785)
T ss_pred             EEcCCeEEEEECCCCEEEEC-CCcEeeCCEEEECCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHH--hhcCCeEEEEC
Confidence            9998 799999887654432 4557999999999999999999999764   222222222222222  23468999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcch------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT  286 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~  286 (382)
                      +|.+|+|+|..|.+.|.+|+++++.+.+...      ....++.+++.||+++++..+.++..++.   +..+.+.+   
T Consensus       148 gG~~GlE~A~~L~~~G~~Vtvv~~~~~ll~~~ld~~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~~---~~~v~~~d---  221 (785)
T TIGR02374       148 GGLLGLEAAVGLQNLGMDVSVIHHAPGLMAKQLDQTAGRLLQRELEQKGLTFLLEKDTVEIVGATK---ADRIRFKD---  221 (785)
T ss_pred             CCHHHHHHHHHHHhcCCeEEEEccCCchhhhhcCHHHHHHHHHHHHHcCCEEEeCCceEEEEcCCc---eEEEEECC---
Confidence            9999999999999999999999988876321      23335667889999999999999987543   33455543   


Q ss_pred             CceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHHHH
Q 016820          287 GQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMAAL  362 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~aa~  362 (382)
                      +  ..+++|.|++++|.+|+..++. .++..+  |.+.||+ +++|++|||||+|||+...   ...+..|..||+.+|.
T Consensus       222 G--~~i~~D~Vi~a~G~~Pn~~la~~~gl~~~--ggI~Vd~-~~~Ts~p~IyA~GD~a~~~~~~~gl~~~a~~qa~vaA~  296 (785)
T TIGR02374       222 G--SSLEADLIVMAAGIRPNDELAVSAGIKVN--RGIIVND-SMQTSDPDIYAVGECAEHNGRVYGLVAPLYEQAKVLAD  296 (785)
T ss_pred             C--CEEEcCEEEECCCCCcCcHHHHhcCCccC--CCEEECC-CcccCCCCEEEeeecceeCCcccccHHHHHHHHHHHHH
Confidence            3  5799999999999999999875 456554  7799998 7889999999999998642   3356678899999999


Q ss_pred             HHH
Q 016820          363 EAE  365 (382)
Q Consensus       363 ~i~  365 (382)
                      ||.
T Consensus       297 ni~  299 (785)
T TIGR02374       297 HIC  299 (785)
T ss_pred             Hhc
Confidence            986

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=100.00  E-value=3.1e-32  Score=274.52  Aligned_cols=289  Identities=23%  Similarity=0.275  Sum_probs=206.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+||||||||+++|..|+++|++|+|+|    ....+||.+..        .+|......++.++..+.+.+.|++
T Consensus       538 tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~E----k~~~~GG~lr~--------~IP~~Rlp~evL~~die~l~~~GVe  605 (1019)
T PRK09853        538 SRKKVAVIGAGPAGLAAAYFLARAGHPVTVFE----REENAGGVVKN--------IIPQFRIPAELIQHDIEFVKAHGVK  605 (1019)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCeEEEEe----cccccCcceee--------ecccccccHHHHHHHHHHHHHcCCE
Confidence            45799999999999999999999999999999    44567777653        1223233456666666777888999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceeeec-cCCCCCCCCCcEEEEcCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACAVC-DGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~VvG~G  214 (382)
                      ++.++...++.++        .....||+||||||++ +..++++|.+......+...... ........+++|+|||+|
T Consensus       606 ~~~gt~Vdi~le~--------L~~~gYDaVILATGA~~~~~l~IpG~~~gV~saldfL~~~k~~~~~~~~GKrVVVIGGG  677 (1019)
T PRK09853        606 FEFGCSPDLTVEQ--------LKNEGYDYVVVAIGADKNGGLKLEGGNQNVIKALPFLEEYKNKGTALKLGKHVVVVGGG  677 (1019)
T ss_pred             EEeCceeEEEhhh--------heeccCCEEEECcCCCCCCCCCCCCccCCceehHHHHHHHhhhcccccCCCEEEEECCC
Confidence            9988533333221        1235699999999997 45567887653111111111111 001113458999999999


Q ss_pred             chHHHHHHHHhhc-C-CEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE--------
Q 016820          215 DSAMEEANFLTKY-G-SKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK--------  282 (382)
Q Consensus       215 ~~a~e~a~~l~~~-g-~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~--------  282 (382)
                      ++|+|+|..+.+. + .+|++++|+..  ++......++++ ++||+++....+.++..++. -.+..+.+.        
T Consensus       678 nVAmD~Ar~a~RlgGakeVTLVyRr~~~~MPA~~eEle~Al-eeGVe~~~~~~p~~I~~dG~-l~~~~~~lg~~d~~Gr~  755 (1019)
T PRK09853        678 NTAMDAARAALRVPGVEKVTVVYRRTKQEMPAWREEYEEAL-EDGVEFKELLNPESFDADGT-LTCRVMKLGEPDESGRR  755 (1019)
T ss_pred             hHHHHHHHHHHhcCCCceEEEEEccCcccccccHHHHHHHH-HcCCEEEeCCceEEEEcCCc-EEEEEEEeecccCCCce
Confidence            9999999998887 4 48999998753  333333334444 46999999999999864321 001111110        


Q ss_pred             -eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHH
Q 016820          283 -NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMA  360 (382)
Q Consensus       283 -~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~a  360 (382)
                       ....+++.++++|.||+++|.+|+..++. .++.++++|++.||+ +++|+.|+|||+|||+.. +.++..|+.+|+.|
T Consensus       756 ~~v~tg~~~~I~aD~VIvAIG~~Pntelle~~GL~ld~~G~I~VDe-tlqTs~pgVFAaGD~a~G-p~tvv~Ai~qGr~A  833 (1019)
T PRK09853        756 RPVETGETVTLEADTVITAIGEQVDTELLKANGIPLDKKGWPVVDA-NGETSLTNVYMIGDVQRG-PSTIVAAIADARRA  833 (1019)
T ss_pred             EEeeCCCeEEEEeCEEEECCCCcCChhHHHhcCccccCCCCEEeCC-CcccCCCCEEEEeccccC-chHHHHHHHHHHHH
Confidence             01124557899999999999999998876 467788899999987 788999999999999863 57899999999999


Q ss_pred             HHHHHHHHH
Q 016820          361 ALEAEHYLQ  369 (382)
Q Consensus       361 a~~i~~~l~  369 (382)
                      |.+|...+.
T Consensus       834 A~nI~~~~~  842 (1019)
T PRK09853        834 ADAILSREG  842 (1019)
T ss_pred             HHHHhhhcC
Confidence            999998765

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=100.00  E-value=1.7e-31  Score=270.59  Aligned_cols=289  Identities=23%  Similarity=0.272  Sum_probs=202.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+||||||||++||+.|++.|++|+|+|    ....+||.+...        +|......+..++..+.+.++|++
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~E----k~~~lGG~l~~~--------IP~~rlp~e~l~~~ie~l~~~GVe  603 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLARAGHPVTVFE----KKEKPGGVVKNI--------IPEFRISAESIQKDIELVKFHGVE  603 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHCCCeEEEEe----cccccCceeeec--------ccccCCCHHHHHHHHHHHHhcCcE
Confidence            45799999999999999999999999999999    445678876531        222223345666666677788999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceeeecc-CCCCCCCCCcEEEEcCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACAVCD-GAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~v~VvG~G  214 (382)
                      ++.+....+       .+. +.....||+||+|||++ +..+.++|........+....... .......+++|+|||+|
T Consensus       604 ~~~g~~~d~-------~ve-~l~~~gYDaVIIATGA~~~~~l~I~G~~~~v~~avefL~~~~~~~~~~~~GK~VVVIGGG  675 (1012)
T TIGR03315       604 FKYGCSPDL-------TVA-ELKNQGYKYVILAIGAWKHGPLRLEGGGERVLKSLEFLRAFKEGPTINPLGKHVVVVGGG  675 (1012)
T ss_pred             EEEecccce-------Ehh-hhhcccccEEEECCCCCCCCCCCcCCCCcceeeHHHHHHHhhccccccccCCeEEEECCC
Confidence            988732111       111 11235699999999997 455577775431111111111111 10113458999999999


Q ss_pred             chHHHHHHHHhhc-C-CEEEEEEeCCC--CcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE--------
Q 016820          215 DSAMEEANFLTKY-G-SKVYIIHRRDS--FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK--------  282 (382)
Q Consensus       215 ~~a~e~a~~l~~~-g-~~v~~~~~~~~--~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~--------  282 (382)
                      ++|+|+|..+.+. | .+|++++++..  ++......++.+ ++||+++....+.++..  ++-.+..+.+.        
T Consensus       676 nvAmD~Ar~a~Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~al-eeGVe~~~~~~p~~I~~--g~l~v~~~~l~~~d~sGr~  752 (1012)
T TIGR03315       676 NTAMDAARAALRVPGVEKVTVVYRRTKRYMPASREELEEAL-EDGVDFKELLSPESFED--GTLTCEVMKLGEPDASGRR  752 (1012)
T ss_pred             HHHHHHHHHHHHhCCCceEEEEEccCccccccCHHHHHHHH-HcCCEEEeCCceEEEEC--CeEEEEEEEeecccCCCce
Confidence            9999999998876 6 48999998763  233333333444 46999999988888872  11011111110        


Q ss_pred             -eccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHH
Q 016820          283 -NLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMA  360 (382)
Q Consensus       283 -~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~a  360 (382)
                       ...++++..+++|.||+++|.+|+..++. .++.++++|++.+|+.+++|+.|+|||+|||+.. +.++..|+.+|+.|
T Consensus       753 ~~v~~Gee~~I~aD~VIvAiG~~Pnt~lle~~GL~ld~~G~I~VD~~~~~Ts~pgVFAaGD~a~G-P~tVv~AIaqGr~A  831 (1012)
T TIGR03315       753 RPVGTGETVDLPADTVIAAVGEQVDTDLLQKNGIPLDEYGWPVVNQATGETNITNVFVIGDANRG-PATIVEAIADGRKA  831 (1012)
T ss_pred             eeecCCCeEEEEeCEEEEecCCcCChHHHHhcCcccCCCCCEEeCCCCCccCCCCEEEEeCcCCC-ccHHHHHHHHHHHH
Confidence             11124456799999999999999998876 4677888999999986689999999999999863 67899999999999


Q ss_pred             HHHHHHHHH
Q 016820          361 ALEAEHYLQ  369 (382)
Q Consensus       361 a~~i~~~l~  369 (382)
                      |.+|.....
T Consensus       832 A~nIl~~~~  840 (1012)
T TIGR03315       832 ANAILSREG  840 (1012)
T ss_pred             HHHHhcccc
Confidence            999986543

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=100.00  E-value=2.6e-31  Score=266.11  Aligned_cols=293  Identities=23%  Similarity=0.263  Sum_probs=210.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||+||+++|..|+++|++|+|+|    ....+||.+..        ++|......++.++..+.++++|++
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E----~~~~~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~  393 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYD----RHPEIGGLLTF--------GIPAFKLDKSLLARRREIFSAMGIE  393 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCceeee--------cCCCccCCHHHHHHHHHHHHHCCeE
Confidence            45799999999999999999999999999999    55567877654        2233333456777767778889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc--------cCC---Cccee-eeccCCCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF--------WNR---GISAC-AVCDGAAPIF  203 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~--------~~~---~~~~~-~~~~~~~~~~  203 (382)
                      ++.++....+     +.+  ......||.|++|+|.. +..+.++|.+.-        ...   ..... ..........
T Consensus       394 ~~~~~~v~~~-----i~~--~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~  466 (654)
T PRK12769        394 FELNCEVGKD-----ISL--ESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINT  466 (654)
T ss_pred             EECCCEeCCc-----CCH--HHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccC
Confidence            9887522111     111  11124699999999995 445677776530        000   00000 0000010023


Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      .+++|+|||+|++|+++|..+.++|. +|+++++++..  +...... +.++++||+++++..+.++..+++|+ +.+|+
T Consensus       467 ~gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~~~~~~~~~~~e~-~~~~~~Gv~~~~~~~~~~i~~~~~g~-v~~v~  544 (654)
T PRK12769        467 AGLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRRDEANMPGSKKEV-KNAREEGANFEFNVQPVALELNEQGH-VCGIR  544 (654)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEecCCCCCCCCHHHH-HHHHHcCCeEEeccCcEEEEECCCCe-EEEEE
Confidence            57899999999999999999999885 79999987653  3344443 34677899999999999998655443 55565


Q ss_pred             EEecc---------------CCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCCC---CCcCCCCceEEec
Q 016820          281 VKNLV---------------TGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKPG---TTHTSVPGVFAAG  340 (382)
Q Consensus       281 ~~~~~---------------~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~vya~G  340 (382)
                      +....               +++...+++|.||+++|+.|+. .++. .++.++++|.+.+|+.   .++|+.|+|||+|
T Consensus       545 ~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfAaG  624 (654)
T PRK12769        545 FLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHGMPWLESHGVTVDKWGRIIADVESQYRYQTSNPKIFAGG  624 (654)
T ss_pred             EEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCccccccccCCcCCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence            53211               2334579999999999999985 3444 4678888999999863   4789999999999


Q ss_pred             ccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       341 D~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      |+... +.++..|+.+|+.||.+|.++|..|
T Consensus       625 D~~~g-~~~vv~Ai~~Gr~AA~~I~~~L~~~  654 (654)
T PRK12769        625 DAVRG-ADLVVTAMAEGRHAAQGIIDWLGVK  654 (654)
T ss_pred             CcCCC-CcHHHHHHHHHHHHHHHHHHHhCcC
Confidence            99864 5788999999999999999998753

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=100.00  E-value=5.2e-31  Score=229.22  Aligned_cols=290  Identities=22%  Similarity=0.211  Sum_probs=213.5

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC-----------------CCCCC---
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-----------------PGFPQ---  115 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-----------------~~~~~---  115 (382)
                      ...+|.+|||||..|+..|+.++++|.++.|+|    .....||+|....+.+.-                 -+++.   
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~~GAkv~l~E----~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~   93 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAASHGAKVALCE----LPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEE   93 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHhcCceEEEEe----cCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccc
Confidence            357999999999999999999999999999999    555778887654332110                 11221   


Q ss_pred             -CCChHHH-------HHHH----HHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeE---EEcCEEEEccCCCCcCCCCC
Q 016820          116 -GILGGDL-------MDRC----RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS---VLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       116 -~~~~~~~-------~~~~----~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~---~~~d~lvlA~G~~~~~~~~~  180 (382)
                       ..++..+       ..+|    ++.+.+.+++++.+....+++.  .+.++..+++   |.++++++|+|.+|..|.+|
T Consensus        94 ~~fdW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~--~v~V~~~d~~~~~Ytak~iLIAtGg~p~~PnIp  171 (478)
T KOG0405|consen   94 GSFDWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPG--EVEVEVNDGTKIVYTAKHILIATGGRPIIPNIP  171 (478)
T ss_pred             cCCcHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCC--ceEEEecCCeeEEEecceEEEEeCCccCCCCCC
Confidence             1233322       2222    3334455788888887777644  3455444443   89999999999999999999


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCC
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPK  255 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~g  255 (382)
                      |.+.....     +-.-..  ...+++++|||+|++|+|+|..+..+|.+++++.|.+.+.-     ......+.++.+|
T Consensus       172 G~E~gidS-----Dgff~L--ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~~kvLR~FD~~i~~~v~~~~~~~g  244 (478)
T KOG0405|consen  172 GAELGIDS-----DGFFDL--EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQEKVLRGFDEMISDLVTEHLEGRG  244 (478)
T ss_pred             chhhcccc-----ccccch--hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEecchhhcchhHHHHHHHHHHhhhcc
Confidence            98752211     111111  44689999999999999999999999999999999987631     2233346688899


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |++|.++.+.++....+|.    ..+..   ..+....+|.++|++|+.|++.-+.   .++.++++|.|.+|+ +++|+
T Consensus       245 invh~~s~~~~v~K~~~g~----~~~i~---~~~~i~~vd~llwAiGR~Pntk~L~le~vGVk~~~~g~IivDe-Yq~Tn  316 (478)
T KOG0405|consen  245 INVHKNSSVTKVIKTDDGL----ELVIT---SHGTIEDVDTLLWAIGRKPNTKGLNLENVGVKTDKNGAIIVDE-YQNTN  316 (478)
T ss_pred             eeecccccceeeeecCCCc----eEEEE---eccccccccEEEEEecCCCCcccccchhcceeeCCCCCEEEec-cccCC
Confidence            9999999999999887762    22222   1224556999999999999998665   578899999999999 99999


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      +|+||++||+.+ +.-+...|...|+..+..+-..
T Consensus       317 vp~I~avGDv~g-k~~LTPVAiaagr~la~rlF~~  350 (478)
T KOG0405|consen  317 VPSIWAVGDVTG-KINLTPVAIAAGRKLANRLFGG  350 (478)
T ss_pred             CCceEEeccccC-cEecchHHHhhhhhHHHHhhcC
Confidence            999999999997 3455667777777776665443

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=100.00  E-value=9e-31  Score=252.97  Aligned_cols=293  Identities=26%  Similarity=0.329  Sum_probs=206.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||+|++|+++|..|++.|++|+|+|    ....+||.+.+        ++|......++.....+.++++|+++
T Consensus       143 ~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~~  210 (485)
T TIGR01317       143 GKKVAVVGSGPAGLAAADQLNRAGHTVTVFE----REDRCGGLLMY--------GIPNMKLDKAIVDRRIDLLSAEGIDF  210 (485)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCeEEEEe----cCCCCCceeec--------cCCCccCCHHHHHHHHHHHHhCCCEE
Confidence            4799999999999999999999999999999    44456766653        22222334556666667778899999


Q ss_pred             EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceee---------eccCC-----CCC
Q 016820          138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACA---------VCDGA-----API  202 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~---------~~~~~-----~~~  202 (382)
                      +.++....+...       +.....||.||+|||.+ |..+++||.+.   ..++...         .....     ...
T Consensus       211 ~~~~~v~~~~~~-------~~~~~~~d~VilAtGa~~~~~l~i~G~~~---~gV~~~~~~l~~~~~~~~~~~~~~~~~~~  280 (485)
T TIGR01317       211 VTNTEIGVDISA-------DELKEQFDAVVLAGGATKPRDLPIPGREL---KGIHYAMEFLPSATKALLGKDFKDIIFIK  280 (485)
T ss_pred             ECCCEeCCccCH-------HHHHhhCCEEEEccCCCCCCcCCCCCcCC---CCcEeHHHHHHHHhhhhcccccccccccc
Confidence            888533222111       11235799999999997 88889998753   1121110         00000     012


Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCCcch----------------HHHHHHhccCCCcEE-EcCcee
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSFRAS----------------KIMQNRALTNPKIDV-IWNSVV  264 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~~~~----------------~~~~~~~l~~~gv~~-~~~~~v  264 (382)
                      ..+++|+|||+|++|+++|..+.+.+ .+|+++++.+.....                ....++..+..|+.+ +++..+
T Consensus       281 ~~gk~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~~~~~~~~~~~~~~~~~~e~~~a~~e~~~~~gv~~~~~~~~~  360 (485)
T TIGR01317       281 AKGKKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKPPEARAKDNPWPEWPRVYRVDYAHEEAAAHYGRDPREYSILT  360 (485)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCChhhcccccCCCccchhhhhHHHHHhhhhhcCccceEEecCc
Confidence            46799999999999999988887776 579999877654211                111223333346543 457778


Q ss_pred             EEEEecCCceeeeeEEEEec--------------cCCceEEEecCeEEEeeCCC-CChhhhc-ccccccCCCceeeCCCC
Q 016820          265 LEAYGEGDKKVLGGLKVKNL--------------VTGQVSDLKVSGLFFAIGHE-PATKFVD-GQLDLHSDGYIITKPGT  328 (382)
Q Consensus       265 ~~i~~~~~g~~~~~v~~~~~--------------~~~~~~~~~~D~vi~~~G~~-p~~~~~~-~~~~~~~~g~i~vd~~~  328 (382)
                      .+|..+++|+ +.++.+...              ..++...+++|.|++++|.. |+..++. .++.++++|++.+++..
T Consensus       361 ~~i~~~~~g~-v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~~~~  439 (485)
T TIGR01317       361 KEFIGDDEGK-VTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGFVGPEQILLDDFGVKKTRRGNISAGYDD  439 (485)
T ss_pred             EEEEEcCCCe-EEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCcCCCccccccccCcccCCCCCEEecCCC
Confidence            8887654332 555553211              12334579999999999996 8877766 46777788999776668


Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      ++|+.|+|||+|||+.. +.++..|+.+|+.||.+|.++|.++..+
T Consensus       440 ~~Ts~~gVfAaGD~~~g-~~~~~~Av~~G~~AA~~i~~~L~g~~~~  484 (485)
T TIGR01317       440 YSTSIPGVFAAGDCRRG-QSLIVWAINEGRKAAAAVDRYLMGSSVL  484 (485)
T ss_pred             ceECCCCEEEeeccCCC-cHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            99999999999999864 5688899999999999999999876543

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=100.00  E-value=9.1e-31  Score=251.97  Aligned_cols=288  Identities=25%  Similarity=0.326  Sum_probs=209.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|++.|++|+++|    ....+||.+..        ++|......++.++..+.+.++|++
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e----~~~~~gG~l~~--------gip~~~~~~~~~~~~~~~~~~~Gv~  207 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILARAGVQVVVFD----RHPEIGGLLTF--------GIPSFKLDKAVLSRRREIFTAMGIE  207 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEe----cCCCCCceeee--------cCccccCCHHHHHHHHHHHHHCCCE
Confidence            45799999999999999999999999999999    45567776653        2333334567777777888999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccccCCCcce--------------ee-eccCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFWNRGISA--------------CA-VCDGAA  200 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~~~~~~~--------------~~-~~~~~~  200 (382)
                      ++.++....+       +..++....||.||+|||+.+ ..+++||.+.   ..++.              .. ......
T Consensus       208 ~~~~~~v~~~-------~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~---~gV~~a~~~l~~~~~~~~~~~~~~~~~~  277 (467)
T TIGR01318       208 FHLNCEVGRD-------ISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDA---PGVLQALPFLIANTRQLMGLPESPEEPL  277 (467)
T ss_pred             EECCCEeCCc-------cCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCC---CCcEEHHHHHHHHHHHhcCCCccccccc
Confidence            9887422111       111122247999999999976 4567888654   11110              00 000000


Q ss_pred             CCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820          201 PIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG  277 (382)
Q Consensus       201 ~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~  277 (382)
                      ....+++++|+|+|.+|+++|..+.++|. +||++++++..  +...... +.++++||+++++..+.++..+++|+ +.
T Consensus       278 ~~~~gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~~~~~~~~~~e~-~~~~~~GV~~~~~~~~~~i~~~~~g~-v~  355 (467)
T TIGR01318       278 IDVEGKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRDEANMPGSRREV-ANAREEGVEFLFNVQPVYIECDEDGR-VT  355 (467)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecCcccCCCCHHHH-HHHHhcCCEEEecCCcEEEEECCCCe-EE
Confidence            12357899999999999999999999985 79999987653  3333333 33567899999999999998765543 55


Q ss_pred             eEEEEec---------------cCCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCC---CCCcCCCCceE
Q 016820          278 GLKVKNL---------------VTGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKP---GTTHTSVPGVF  337 (382)
Q Consensus       278 ~v~~~~~---------------~~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~---~~~~t~~~~vy  337 (382)
                      ++++...               .++++..+++|.||+++|++|+. .++. .++.++++|++.+|+   ..++|+.|+||
T Consensus       356 ~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd~~~~~~~~T~~~gVf  435 (467)
T TIGR01318       356 GVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHAMPWLAGHGITLDSWGRIITGDVSYLPYQTTNPKIF  435 (467)
T ss_pred             EEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCccccccccCccCCCCCCEEeCCccccCccCCCCCEE
Confidence            5555321               12345689999999999999985 3443 467788889999994   36789999999


Q ss_pred             EecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          338 AAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ++|||+.. +..+..|+.+|+.||.+|.++|.
T Consensus       436 a~GD~~~~-~~~~~~Ai~~G~~aA~~i~~~L~  466 (467)
T TIGR01318       436 AGGDAVRG-ADLVVTAVAEGRQAAQGILDWLG  466 (467)
T ss_pred             EECCcCCC-ccHHHHHHHHHHHHHHHHHHHhc
Confidence            99999864 56788999999999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=100.00  E-value=7.6e-31  Score=230.97  Aligned_cols=294  Identities=24%  Similarity=0.246  Sum_probs=220.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC----------------------CCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF----------------------PGFP  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~----------------------~~~~  114 (382)
                      .++||+|||+||+|..+|..++++|++.++||    +....||++....+.+.-                      ...+
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvE----kr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~  113 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVE----KRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSS  113 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHHhcceeEEEe----ccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCccccc
Confidence            47999999999999999999999999999999    566888887654332110                      0011


Q ss_pred             CCCChHHH-----------HHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC---CeEEEcCEEEEccCCCCcCCCCC
Q 016820          115 QGILGGDL-----------MDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD---SKSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       115 ~~~~~~~~-----------~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~---~~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      ..++.+.+           ..-+...+++.+++++.+.-..++++  .+.+...   ...+.++.+|+|||+.  .+++|
T Consensus       114 ~~~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~--~V~v~k~dg~~~ii~aKnIiiATGSe--V~~~P  189 (506)
T KOG1335|consen  114 VSLDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPN--KVSVKKIDGEDQIIKAKNIIIATGSE--VTPFP  189 (506)
T ss_pred             eecCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCc--eEEEeccCCCceEEeeeeEEEEeCCc--cCCCC
Confidence            12222222           22344455666888888876666654  3444432   2459999999999994  23455


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------chHHHHHHhccCC
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------ASKIMQNRALTNP  254 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------~~~~~~~~~l~~~  254 (382)
                      |..-- ...+-+..-....  ...+++++|+|+|.+|+|+..-+.++|.+||+++-.+.+.      .++.. ++.|+..
T Consensus       190 GI~ID-ekkIVSStgALsL--~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD~Eisk~~-qr~L~kQ  265 (506)
T KOG1335|consen  190 GITID-EKKIVSSTGALSL--KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMDGEISKAF-QRVLQKQ  265 (506)
T ss_pred             CeEec-CceEEecCCccch--hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccCHHHHHHH-HHHHHhc
Confidence            54321 1222222222222  4568999999999999999999999999999999887763      23444 5778889


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t  331 (382)
                      |+.+++++.+..++.+++|.  ..+.+++..+++...++||.+++++|++|.+.-+.   .++..|++|.+.+|. .++|
T Consensus       266 gikF~l~tkv~~a~~~~dg~--v~i~ve~ak~~k~~tle~DvlLVsiGRrP~t~GLgle~iGi~~D~r~rv~v~~-~f~t  342 (506)
T KOG1335|consen  266 GIKFKLGTKVTSATRNGDGP--VEIEVENAKTGKKETLECDVLLVSIGRRPFTEGLGLEKIGIELDKRGRVIVNT-RFQT  342 (506)
T ss_pred             CceeEeccEEEEeeccCCCc--eEEEEEecCCCceeEEEeeEEEEEccCcccccCCChhhcccccccccceeccc-cccc
Confidence            99999999999999999873  34677776777788999999999999999988665   477789999999998 8899


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      .+||||+|||+... |++++.|..+|-.+.+.|+.
T Consensus       343 ~vP~i~~IGDv~~g-pMLAhkAeeegI~~VE~i~g  376 (506)
T KOG1335|consen  343 KVPHIYAIGDVTLG-PMLAHKAEEEGIAAVEGIAG  376 (506)
T ss_pred             cCCceEEecccCCc-chhhhhhhhhchhheeeecc
Confidence            99999999999974 78999999999988776653

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=99.98  E-value=2.7e-30  Score=246.85  Aligned_cols=282  Identities=19%  Similarity=0.213  Sum_probs=203.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-----------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-----------------------------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-----------------------------  107 (382)
                      ..++|+|||||++||.+|++|.+.|++|+++|    +...+||.|......                             
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE----~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~   84 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFE----REKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRE   84 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEe----cCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHh
Confidence            35899999999999999999999999999999    556778888653210                             


Q ss_pred             ----ccCCCCC----------CCCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecCCcEEEEECC--e---EEEcCE
Q 016820          108 ----ENFPGFP----------QGILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKSRPFKVFTDS--K---SVLADT  165 (382)
Q Consensus       108 ----~~~~~~~----------~~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~~~~~v~~~~--~---~~~~d~  165 (382)
                          ..+|..+          ..+...++.+|++++++++++.  +..+ +|+.|++.++.|.+.+.+  +   +..||+
T Consensus        85 ~m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~  164 (461)
T PLN02172         85 CMGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDA  164 (461)
T ss_pred             hccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCE
Confidence                1122211          2346689999999999999987  6666 799999888888887632  1   367999


Q ss_pred             EEEccC--CCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch
Q 016820          166 VIVATG--AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS  243 (382)
Q Consensus       166 lvlA~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~  243 (382)
                      ||+|+|  ..|+.|.+||.+.+.+..+|.+.+....  .+.+|+|+|||+|.+|+|+|..|.+.+++|++++|...+...
T Consensus       165 VIvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr~~~--~~~gk~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~~~~~~  242 (461)
T PLN02172        165 VVVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYRVPD--PFKNEVVVVIGNFASGADISRDIAKVAKEVHIASRASESDTY  242 (461)
T ss_pred             EEEeccCCCCCcCCCCCCcccCCceEEEecccCCcc--ccCCCEEEEECCCcCHHHHHHHHHHhCCeEEEEEeecccccc
Confidence            999999  5799999999988888888888887765  678999999999999999999999999999999997654211


Q ss_pred             HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc-c-ccccCCCc
Q 016820          244 KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-Q-LDLHSDGY  321 (382)
Q Consensus       244 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~-~-~~~~~~g~  321 (382)
                           ..+......++.+..|..+..++.      |++.+   +  ..+++|.||+|||++++.+++.. + +..+.+..
T Consensus       243 -----~~~~~~~~~v~~~~~I~~~~~~g~------V~f~D---G--~~~~~D~Ii~~TGy~~~~pfL~~~~~i~v~~~~v  306 (461)
T PLN02172        243 -----EKLPVPQNNLWMHSEIDTAHEDGS------IVFKN---G--KVVYADTIVHCTGYKYHFPFLETNGYMRIDENRV  306 (461)
T ss_pred             -----ccCcCCCCceEECCcccceecCCe------EEECC---C--CCccCCEEEECCcCCccccccCcccceeeCCCcc
Confidence                 112222334455667776654432      77765   4  45789999999999999999862 1 22222221


Q ss_pred             eeeCCCCCcCC-CCceEEecccCCchhhHHHHHHhhHHHHHH
Q 016820          322 IITKPGTTHTS-VPGVFAAGDVQDKKYRQAVTAAGTGCMAAL  362 (382)
Q Consensus       322 i~vd~~~~~t~-~~~vya~GD~~~~~~~~~~~a~~~g~~aa~  362 (382)
                      ...-.+.+... .|+++.+|=....  .....+-.|++.+|.
T Consensus       307 ~~Ly~~~f~~~~~p~LafiG~~~~~--~~f~~~E~Qa~~~a~  346 (461)
T PLN02172        307 EPLYKHVFPPALAPGLSFIGLPAMG--IQFVMFEIQSKWVAA  346 (461)
T ss_pred             hhhHHhhcCCCCCCcEEEEeccccc--cCchhHHHHHHHHHH
Confidence            12322233444 4899999976421  223344445554443

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=99.97  E-value=5.6e-30  Score=255.38  Aligned_cols=293  Identities=22%  Similarity=0.257  Sum_probs=209.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|++.|++|+++|    ....+||.+.+        ++|......++.+...+.+.++|++
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e----~~~~~GG~l~~--------gip~~~l~~~~~~~~~~~~~~~Gv~  376 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILARAGVQVDVFD----RHPEIGGMLTF--------GIPPFKLDKTVLSQRREIFTAMGID  376 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHHcCCcEEEEe----CCCCCCCeeec--------cCCcccCCHHHHHHHHHHHHHCCeE
Confidence            45899999999999999999999999999999    55567777654        2333334466777777788899999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc--------cCCCcceeeeccC----CCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF--------WNRGISACAVCDG----AAPIF  203 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~--------~~~~~~~~~~~~~----~~~~~  203 (382)
                      ++.++....+     +.+  ++....||.||+|+|+. +..+.++|.+.-        .............    .....
T Consensus       377 ~~~~~~v~~~-----~~~--~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~  449 (639)
T PRK12809        377 FHLNCEIGRD-----ITF--SDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDV  449 (639)
T ss_pred             EEcCCccCCc-----CCH--HHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccC
Confidence            9888421111     111  11234699999999996 445677776530        0000000000000    01123


Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      .+++++|+|+|.++++.+..+.++| .+||++++++..  +....... .++++||+++++..+.++..+++|+ +.+++
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr~~~~~~~~~~e~~-~a~~eGv~~~~~~~~~~i~~~~~g~-v~~v~  527 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRRDEVSMPGSRKEVV-NAREEGVEFQFNVQPQYIACDEDGR-LTAVG  527 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCcccCCCCHHHHH-HHHHcCCeEEeccCCEEEEECCCCe-EEEEE
Confidence            5799999999999999999988888 489999987654  22233322 3557899999999999998765553 55554


Q ss_pred             EEecc---------------CCceEEEecCeEEEeeCCCCCh-hhhc-ccccccCCCceeeCCC---CCcCCCCceEEec
Q 016820          281 VKNLV---------------TGQVSDLKVSGLFFAIGHEPAT-KFVD-GQLDLHSDGYIITKPG---TTHTSVPGVFAAG  340 (382)
Q Consensus       281 ~~~~~---------------~~~~~~~~~D~vi~~~G~~p~~-~~~~-~~~~~~~~g~i~vd~~---~~~t~~~~vya~G  340 (382)
                      +....               +++...+++|.||+++|++|+. .++. .++.++++|++.+|+.   +++|+.|+|||+|
T Consensus       528 ~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~~~~~~~Ts~~gVfA~G  607 (639)
T PRK12809        528 LIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTGDVGYLPTQTHLKKVFAGG  607 (639)
T ss_pred             EEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCccccccccCcccCCCCCEEeCCCcccCcccCCCCEEEcC
Confidence            42211               2345689999999999999974 4444 4677888899999862   4789999999999


Q ss_pred             ccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       341 D~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      |+... +.++..|+.+|+.||.+|..+|.++
T Consensus       608 D~~~g-~~~vv~Ai~~Gr~AA~~i~~~l~~~  637 (639)
T PRK12809        608 DAVHG-ADLVVTAMAAGRQAARDMLTLFDTK  637 (639)
T ss_pred             CCCCC-chHHHHHHHHHHHHHHHHHHHHhhh
Confidence            99864 5788999999999999999999865

>PRK13984 putative oxidoreductase; Provisional

Probab=99.97  E-value=1.2e-29  Score=252.71  Aligned_cols=288  Identities=24%  Similarity=0.318  Sum_probs=200.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|+++|++|+|+|    ....+||.+..        +++......++.....+.++++|++
T Consensus       282 ~~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie----~~~~~gG~~~~--------~i~~~~~~~~~~~~~~~~~~~~gv~  349 (604)
T PRK13984        282 KNKKVAIVGSGPAGLSAAYFLATMGYEVTVYE----SLSKPGGVMRY--------GIPSYRLPDEALDKDIAFIEALGVK  349 (604)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCceEee--------cCCcccCCHHHHHHHHHHHHHCCcE
Confidence            45789999999999999999999999999999    44556666543        2222233456666666778889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccc-cCCCcceeeecc----CC-CCCCCCCcEE
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAF-WNRGISACAVCD----GA-APIFRDKPLA  209 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~-~~~~~~~~~~~~----~~-~~~~~~~~v~  209 (382)
                      ++.++....+..       .+.....||+||+|||+. |+.+++||.+.. ............    .. .....+++|+
T Consensus       350 ~~~~~~v~~~~~-------~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~k~Vv  422 (604)
T PRK13984        350 IHLNTRVGKDIP-------LEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGEGPKPKIPRSLV  422 (604)
T ss_pred             EECCCEeCCcCC-------HHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccCCCcCCCCCcEE
Confidence            988843222110       111235799999999996 688889987541 011111111010    00 0022468999


Q ss_pred             EEcCCchHHHHHHHHhhcC------CEEEEEEeCC---CCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          210 VIGGGDSAMEEANFLTKYG------SKVYIIHRRD---SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       210 VvG~G~~a~e~a~~l~~~g------~~v~~~~~~~---~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      |||+|.+|+|+|..+.+++      .+|+++....   .++.......+. .++||+++++..+.++..+++  .+..++
T Consensus       423 VIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~r~~~~~~~~~~e~~~~-~~~GV~i~~~~~~~~i~~~~g--~v~~v~  499 (604)
T PRK13984        423 VIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLERTFEEMPADMEEIEEG-LEEGVVIYPGWGPMEVVIEND--KVKGVK  499 (604)
T ss_pred             EECCchHHHHHHHHHHhccccccCceEEEEeccccCcccCCCCHHHHHHH-HHcCCEEEeCCCCEEEEccCC--EEEEEE
Confidence            9999999999999998875      3678764321   122222222333 357999999999988865432  255555


Q ss_pred             EEec--------------cCCceEEEecCeEEEeeCCCCChhhhcc----cccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820          281 VKNL--------------VTGQVSDLKVSGLFFAIGHEPATKFVDG----QLDLHSDGYIITKPGTTHTSVPGVFAAGDV  342 (382)
Q Consensus       281 ~~~~--------------~~~~~~~~~~D~vi~~~G~~p~~~~~~~----~~~~~~~g~i~vd~~~~~t~~~~vya~GD~  342 (382)
                      +...              .++++..+++|.|++++|++|+..++..    ++.. ++|++.||+ .++|++|+|||+||+
T Consensus       500 ~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~-~~~Ts~~gVfAaGD~  577 (604)
T PRK13984        500 FKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYLPEELKSKLEF-VRGRILTNE-YGQTSIPWLFAGGDI  577 (604)
T ss_pred             EEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhhhhhhccCccc-cCCeEEeCC-CCccCCCCEEEecCc
Confidence            5321              0234467999999999999999887652    2433 468899998 789999999999999


Q ss_pred             CCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          343 QDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       343 ~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +..+  ....|+.+|+.||.+|.++|.+
T Consensus       578 ~~~~--~~v~Ai~~G~~AA~~I~~~L~~  603 (604)
T PRK13984        578 VHGP--DIIHGVADGYWAAEGIDMYLRK  603 (604)
T ss_pred             CCch--HHHHHHHHHHHHHHHHHHHhcc
Confidence            9743  4578999999999999999965

>PLN02852 ferredoxin-NADP+ reductase

Probab=99.97  E-value=3.3e-29  Score=238.56  Aligned_cols=293  Identities=19%  Similarity=0.285  Sum_probs=205.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH--cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR--AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ..++|+||||||||+++|..|++  .|++|+|+|    ....+||.+.+.       -.|++....++...+.+.+...+
T Consensus        25 ~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E----~~p~pgGlvr~g-------vaP~~~~~k~v~~~~~~~~~~~~   93 (491)
T PLN02852         25 EPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIE----RLPTPFGLVRSG-------VAPDHPETKNVTNQFSRVATDDR   93 (491)
T ss_pred             CCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEe----cCCCCcceEeec-------cCCCcchhHHHHHHHHHHHHHCC
Confidence            45789999999999999999987  699999999    455677766531       11344455667777777788888


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccc----------cCCCcceeeeccCCCCCC
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAF----------WNRGISACAVCDGAAPIF  203 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~----------~~~~~~~~~~~~~~~~~~  203 (382)
                      ++++.+.....+       +..++-...||+||+|+|+.+ +.+++||.+.-          |.+....+......  ..
T Consensus        94 v~~~~nv~vg~d-------vtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~--~~  164 (491)
T PLN02852         94 VSFFGNVTLGRD-------VSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPD--LK  164 (491)
T ss_pred             eEEEcCEEECcc-------ccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhc--cc
Confidence            998776322111       111222347999999999975 67789997641          01110011000111  23


Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCc--ch-H---------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFR--AS-K---------------  244 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~--~~-~---------------  244 (382)
                      .+++++|||+|++|+++|..|.+.                    + .+|+++.|+....  +. +               
T Consensus       165 ~gk~VvVIGgGnvAlD~Ar~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~  244 (491)
T PLN02852        165 SSDTAVVLGQGNVALDCARILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRI  244 (491)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceee
Confidence            578999999999999999998765                    4 4699999988431  00 0               


Q ss_pred             -------------------------HHHHHhccC---------CCcEEEcCceeEEEEecC--CceeeeeEEEEec----
Q 016820          245 -------------------------IMQNRALTN---------PKIDVIWNSVVLEAYGEG--DKKVLGGLKVKNL----  284 (382)
Q Consensus       245 -------------------------~~~~~~l~~---------~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~~----  284 (382)
                                               .++++...+         ++|.+++...+.+|..++  +| .+.++++...    
T Consensus       245 ~~~~~~~~~~~~~~~~~~r~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~-~v~~l~~~~~~l~~  323 (491)
T PLN02852        245 KEADLTLSPEDEEELKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNG-HVAGVKLERTVLEG  323 (491)
T ss_pred             chhhhccccchhhhhccchhhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCC-cEEEEEEEEeecCC
Confidence                                     001111111         579999999999998532  23 4777777532    


Q ss_pred             ----------cCCceEEEecCeEEEeeCCC--CChhh-hc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhH
Q 016820          285 ----------VTGQVSDLKVSGLFFAIGHE--PATKF-VD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQ  349 (382)
Q Consensus       285 ----------~~~~~~~~~~D~vi~~~G~~--p~~~~-~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~  349 (382)
                                .+++...++||.||.+.|++  |...+ +.  .++..+.+|++.+|+ ..+|+.|+|||+|||...+.+.
T Consensus       324 ~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~~~p~~~l~f~~~~gv~~n~~G~V~~d~-~~~T~ipGvyAaGDi~~Gp~gv  402 (491)
T PLN02852        324 AAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDGLPFDHKRGVVPNVHGRVLSSA-SGADTEPGLYVVGWLKRGPTGI  402 (491)
T ss_pred             CcccCCcccCCCCCEEEEECCEEEEeecCCCCCCCCCccccCcCeeECCCceEEeCC-CCccCCCCEEEeeeEecCCCCe
Confidence                      13445679999999999998  44442 22  245667889999987 5678999999999999877779


Q ss_pred             HHHHHhhHHHHHHHHHHHHHHc
Q 016820          350 AVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       350 ~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      +..++.+|+.++.+|.+++...
T Consensus       403 I~t~~~dA~~ta~~i~~d~~~~  424 (491)
T PLN02852        403 IGTNLTCAEETVASIAEDLEQG  424 (491)
T ss_pred             eeecHhhHHHHHHHHHHHHHcC
Confidence            9999999999999999999863

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=99.97  E-value=7.1e-29  Score=244.88  Aligned_cols=291  Identities=27%  Similarity=0.383  Sum_probs=208.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|+++|++|+++|    .....||.+..        ++|......++.+.-.+.+.++|++
T Consensus       136 ~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e----~~~~~GG~l~~--------gip~~~~~~~~~~~~l~~~~~~Gv~  203 (564)
T PRK12771        136 TGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFE----AGPKLGGMMRY--------GIPAYRLPREVLDAEIQRILDLGVE  203 (564)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCeeee--------cCCCccCCHHHHHHHHHHHHHCCCE
Confidence            45789999999999999999999999999999    45567776643        2333333456666666677889999


Q ss_pred             EEEee-E-EEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCcccc-CCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          137 IFTET-V-SKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFW-NRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       137 ~~~~~-v-~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      +..+. + .++..+.         ....||+||+|+|..+ ..+.+++.+... ...+..............+++++|+|
T Consensus       204 ~~~~~~~~~~~~~~~---------~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~~~~~~gk~v~ViG  274 (564)
T PRK12771        204 VRLGVRVGEDITLEQ---------LEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEGEPPFLGKRVVVIG  274 (564)
T ss_pred             EEeCCEECCcCCHHH---------HHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhccCCcCCCCCEEEEC
Confidence            88774 3 2221111         1125899999999964 455677754310 00000000000000134589999999


Q ss_pred             CCchHHHHHHHHhhcC-CEEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc----
Q 016820          213 GGDSAMEEANFLTKYG-SKVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV----  285 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g-~~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~----  285 (382)
                      +|.++++.+..+.+++ .+|+++++.+..  ........+ ..+.||+++++..+.++..++++. + ++++....    
T Consensus       275 gg~~a~d~a~~a~~lga~~v~ii~r~~~~~~~~~~~~~~~-a~~~GVki~~~~~~~~i~~~~~~~-~-~v~~~~~~~~~~  351 (564)
T PRK12771        275 GGNTAMDAARTARRLGAEEVTIVYRRTREDMPAHDEEIEE-ALREGVEINWLRTPVEIEGDENGA-T-GLRVITVEKMEL  351 (564)
T ss_pred             ChHHHHHHHHHHHHcCCCEEEEEEecCcccCCCCHHHHHH-HHHcCCEEEecCCcEEEEcCCCCE-E-EEEEEEEEeccc
Confidence            9999999999998888 679999887642  333333333 445799999999999998766542 1 33332110    


Q ss_pred             ---------CCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHH
Q 016820          286 ---------TGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA  354 (382)
Q Consensus       286 ---------~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~  354 (382)
                               +++...+++|.||+++|..|+..++.  .++. +++|++.+|+.+++|+.|+||++||+... ++++..|+
T Consensus       352 ~~~g~~~~~~g~~~~i~~D~Vi~A~G~~p~~~~~~~~~gl~-~~~G~i~vd~~~~~ts~~~Vfa~GD~~~g-~~~v~~Av  429 (564)
T PRK12771        352 DEDGRPSPVTGEEETLEADLVVLAIGQDIDSAGLESVPGVE-VGRGVVQVDPNFMMTGRPGVFAGGDMVPG-PRTVTTAI  429 (564)
T ss_pred             CCCCCeeecCCceEEEECCEEEECcCCCCchhhhhhccCcc-cCCCCEEeCCCCccCCCCCEEeccCcCCC-chHHHHHH
Confidence                     24456899999999999999988776  3566 77899999998889999999999999863 67899999


Q ss_pred             hhHHHHHHHHHHHHHHccC
Q 016820          355 GTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       355 ~~g~~aa~~i~~~l~~~~~  373 (382)
                      .+|+.+|.+|.++|.++..
T Consensus       430 ~~G~~aA~~i~~~L~g~~~  448 (564)
T PRK12771        430 GHGKKAARNIDAFLGGEPY  448 (564)
T ss_pred             HHHHHHHHHHHHHHcCCCC
Confidence            9999999999999987653

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=99.97  E-value=1.1e-29  Score=227.22  Aligned_cols=301  Identities=18%  Similarity=0.201  Sum_probs=217.4

Q ss_pred             cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCC-CCChHHHHHHHHHHHHH
Q 016820           54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ-GILGGDLMDRCRNQSLR  132 (382)
Q Consensus        54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  132 (382)
                      ....+++|||+|+|++|.+++..|...-++|++|.+.        ..+..+.   -+|..+. .+....+.+..+...++
T Consensus        51 ~~~kKk~vVVLGsGW~a~S~lk~ldts~YdV~vVSPR--------nyFlFTP---LLpS~~vGTve~rSIvEPIr~i~r~  119 (491)
T KOG2495|consen   51 NGGKKKRVVVLGSGWGAISLLKKLDTSLYDVTVVSPR--------NYFLFTP---LLPSTTVGTVELRSIVEPIRAIARK  119 (491)
T ss_pred             CCCCCceEEEEcCchHHHHHHHhccccccceEEeccc--------cceEEee---ccCCccccceeehhhhhhHHHHhhc
Confidence            3456789999999999999999999999999999942        1111111   1111111 23345666777666655


Q ss_pred             c--CcEEEEeeEEEEEecCCcEEEEE---CC----eEEEcCEEEEccCCCCcCCCCCCCcc--ccCCCcceeeec-----
Q 016820          133 F--GTQIFTETVSKVDFKSRPFKVFT---DS----KSVLADTVIVATGAVAKKLQFPGSDA--FWNRGISACAVC-----  196 (382)
Q Consensus       133 ~--gi~~~~~~v~~i~~~~~~~~v~~---~~----~~~~~d~lvlA~G~~~~~~~~~g~~~--~~~~~~~~~~~~-----  196 (382)
                      .  +++++..+...||++++.++++.   ++    -.+.||+||+|+|..++.+.+||..+  ++.+.+++.+..     
T Consensus       120 k~~~~~y~eAec~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~~TFgipGV~e~~~FLKEv~dAqeIR~~~~  199 (491)
T KOG2495|consen  120 KNGEVKYLEAECTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEPNTFGIPGVEENAHFLKEVEDAQEIRRKVI  199 (491)
T ss_pred             cCCCceEEecccEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCCCCCCCCchhhchhhhhhhhHHHHHHHHHH
Confidence            5  67788888999999999887764   22    35899999999999999999999876  222333332211     


Q ss_pred             --------cCCC--CCCCCCcEEEEcCCchHHHHHHHHhhc--------------CCEEEEEEeCCCCcch-----HHHH
Q 016820          197 --------DGAA--PIFRDKPLAVIGGGDSAMEEANFLTKY--------------GSKVYIIHRRDSFRAS-----KIMQ  247 (382)
Q Consensus       197 --------~~~~--~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------g~~v~~~~~~~~~~~~-----~~~~  247 (382)
                              ....  +..+-.+++|||||++|+|+|.+|...              -.+||++...+.+...     ....
T Consensus       200 ~~le~a~~~~l~~eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL~mFdkrl~~ya  279 (491)
T KOG2495|consen  200 DNLEKAELPGLSDEERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHILNMFDKRLVEYA  279 (491)
T ss_pred             HHHHHhhcCCCChHHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHHHHHHHHHHHHH
Confidence                    0000  012234799999999999999988854              1479999998866321     1223


Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCC--ceeeC
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG--YIITK  325 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g--~i~vd  325 (382)
                      ++.+.+.||.+..++.+..+.+..       +..+.. +|+..++++.+++|+||..|.+-.-......++.|  .+.+|
T Consensus       280 e~~f~~~~I~~~~~t~Vk~V~~~~-------I~~~~~-~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vD  351 (491)
T KOG2495|consen  280 ENQFVRDGIDLDTGTMVKKVTEKT-------IHAKTK-DGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVD  351 (491)
T ss_pred             HHHhhhccceeecccEEEeecCcE-------EEEEcC-CCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeee
Confidence            467888999999999999998887       666653 46668899999999999988654322122233444  89999


Q ss_pred             CCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820          326 PGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       326 ~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~~i~~~l~~~~~  373 (382)
                      ++++..+.+||||+|||+..  .++++..|.+||.++|++...-......
T Consensus       352 E~LrV~G~~nvfAiGDca~~~~~~~tAQVA~QqG~yLAk~fn~m~k~~~~  401 (491)
T KOG2495|consen  352 EWLRVKGVKNVFAIGDCADQRGLKPTAQVAEQQGAYLAKNFNKMGKGGNL  401 (491)
T ss_pred             ceeeccCcCceEEeccccccccCccHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            98888899999999999932  2559999999999999999877765443

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=99.97  E-value=8e-30  Score=232.26  Aligned_cols=287  Identities=24%  Similarity=0.313  Sum_probs=213.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+++|||+|++|..|+..+++.|.  +++|+-+.        -..  +.+...++.+.. .....+.....++.++++|
T Consensus        74 ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~--------~~~--pydr~~Ls~~~~-~~~~~~a~r~~e~Yke~gI  142 (478)
T KOG1336|consen   74 ARHFVIVGGGPGGAVAIETLRQVGFTERIALVKRE--------YLL--PYDRARLSKFLL-TVGEGLAKRTPEFYKEKGI  142 (478)
T ss_pred             cceEEEEcCCchhhhhHhhHHhhCCCcceEEEecc--------ccC--cccchhccccee-eccccccccChhhHhhcCc
Confidence            5789999999999999999999974  56666421        000  001111111111 1223444455556788899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      +++.+ .|+.+|...+.+.+. +++.+.|++++||||+.++.+++||.+.   +..+.+...+.....  ......|+++
T Consensus       143 e~~~~t~v~~~D~~~K~l~~~-~Ge~~kys~LilATGs~~~~l~~pG~~~~nv~~ireieda~~l~~~--~~~~~~vV~v  219 (478)
T KOG1336|consen  143 ELILGTSVVKADLASKTLVLG-NGETLKYSKLIIATGSSAKTLDIPGVELKNVFYLREIEDANRLVAA--IQLGGKVVCV  219 (478)
T ss_pred             eEEEcceeEEeeccccEEEeC-CCceeecceEEEeecCccccCCCCCccccceeeeccHHHHHHHHHH--hccCceEEEE
Confidence            99999 699999988876554 6778999999999999999999999875   222333333322332  3447889999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV  285 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~  285 (382)
                      |+|..++|++..|...+++||++++.+.+..      .....+.++++.||+++.++.+.+++.+.+|+ +..|.+.+  
T Consensus       220 G~G~ig~Evaa~l~~~~~~VT~V~~e~~~~~~lf~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Ge-v~~V~l~d--  296 (478)
T KOG1336|consen  220 GGGFIGMEVAAALVSKAKSVTVVFPEPWLLPRLFGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGE-VSEVKLKD--  296 (478)
T ss_pred             CchHHHHHHHHHHHhcCceEEEEccCccchhhhhhHHHHHHHHHHHHhcCeEEEEecceeecccCCCCc-EEEEEecc--
Confidence            9999999999999999999999999887632      22333578899999999999999999998875 54566654  


Q ss_pred             CCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchh---------hHHHHHHhh
Q 016820          286 TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY---------RQAVTAAGT  356 (382)
Q Consensus       286 ~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~---------~~~~~a~~~  356 (382)
                       +  .++++|.+++.+|.+|++.+++.+...++.|++.||+ +++|++|||||+||++..+.         ..+..|..+
T Consensus       297 -g--~~l~adlvv~GiG~~p~t~~~~~g~~~~~~G~i~V~~-~f~t~~~~VyAiGDva~fp~~~~~~~~~v~H~~~A~~~  372 (478)
T KOG1336|consen  297 -G--KTLEADLVVVGIGIKPNTSFLEKGILLDSKGGIKVDE-FFQTSVPNVYAIGDVATFPLKGYGEDRRVEHVDHARAS  372 (478)
T ss_pred             -C--CEeccCeEEEeeccccccccccccceecccCCEeehh-ceeeccCCcccccceeecccccccccccchHHHHHHHH
Confidence             4  7899999999999999999997677788999999999 89999999999999996432         234455555


Q ss_pred             HHHHHHHHH
Q 016820          357 GCMAALEAE  365 (382)
Q Consensus       357 g~~aa~~i~  365 (382)
                      |+.+...|.
T Consensus       373 g~~av~ai~  381 (478)
T KOG1336|consen  373 GRQAVKAIK  381 (478)
T ss_pred             HHhhhhhhh
Confidence            555444443

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=99.97  E-value=6e-29  Score=238.39  Aligned_cols=274  Identities=23%  Similarity=0.255  Sum_probs=194.8

Q ss_pred             HHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCC-CC-hHHHHHHH-HHHHHHcCcEEEEe-eEEEE
Q 016820           72 TAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG-IL-GGDLMDRC-RNQSLRFGTQIFTE-TVSKV  145 (382)
Q Consensus        72 ~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~-~~-~~~~~~~~-~~~~~~~gi~~~~~-~v~~i  145 (382)
                      ++|.+|+++  .++|+|||+..    ...   ..+..   ++.+..+ .. .+++..+. .++..++|++++.+ +|+.+
T Consensus         1 saA~~l~~~~~~~~Vtlid~~~----~~~---~~~~~---l~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~i   70 (427)
T TIGR03385         1 SAASRVRRLDKESDIIVFEKTE----DVS---FANCG---LPYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEV   70 (427)
T ss_pred             CHHHHHHhhCCCCcEEEEEcCC----cee---EEcCC---CCeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEE
Confidence            478888887  47899999532    110   00000   1111111 11 23334333 34557889998766 89999


Q ss_pred             EecCCcEEEEEC--CeEEE--cCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHH
Q 016820          146 DFKSRPFKVFTD--SKSVL--ADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAM  218 (382)
Q Consensus       146 ~~~~~~~~v~~~--~~~~~--~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~  218 (382)
                      +++++.+.+...  +..+.  ||+||+|||++|+.|++||.+.   +....+..+...........+++++|||+|.+|+
T Consensus        71 d~~~~~v~~~~~~~~~~~~~~yd~lIiATG~~p~~~~i~G~~~~~v~~~~~~~~~~~~~~~l~~~~~~~vvViGgG~~g~  150 (427)
T TIGR03385        71 NDERQTVVVRNNKTNETYEESYDYLILSPGASPIVPNIEGINLDIVFTLRNLEDTDAIKQYIDKNKVENVVIIGGGYIGI  150 (427)
T ss_pred             ECCCCEEEEEECCCCCEEecCCCEEEECCCCCCCCCCCCCcCCCCEEEECCHHHHHHHHHHHhhcCCCeEEEECCCHHHH
Confidence            988888877653  34577  9999999999999999998652   1112222222111111113468999999999999


Q ss_pred             HHHHHHhhcCCEEEEEEeCCCCc---c---hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          219 EEANFLTKYGSKVYIIHRRDSFR---A---SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       219 e~a~~l~~~g~~v~~~~~~~~~~---~---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      |+|..|.+.|.+|+++.+.+.+.   .   ......+.+++.||+++++..+.+++.++.   +  +.+.+   +  ..+
T Consensus       151 e~A~~l~~~g~~Vtli~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~---~--v~~~~---g--~~i  220 (427)
T TIGR03385       151 EMAEALRERGKNVTLIHRSERILNKLFDEEMNQIVEEELKKHEINLRLNEEVDSIEGEER---V--KVFTS---G--GVY  220 (427)
T ss_pred             HHHHHHHhCCCcEEEEECCcccCccccCHHHHHHHHHHHHHcCCEEEeCCEEEEEecCCC---E--EEEcC---C--CEE
Confidence            99999999999999999887652   1   122234567788999999999999987542   1  23322   3  469


Q ss_pred             ecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHHHHHHhhHHHHHH
Q 016820          293 KVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQAVTAAGTGCMAAL  362 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~~~a~~~g~~aa~  362 (382)
                      ++|.+++++|.+|+.+++. .++.++++|++.||+ .++|+.|+|||+|||+..         .++.+..|.+||+.+|+
T Consensus       221 ~~D~vi~a~G~~p~~~~l~~~gl~~~~~G~i~vd~-~~~t~~~~Vya~GD~~~~~~~~~~~~~~~~~~~~A~~~g~~~a~  299 (427)
T TIGR03385       221 QADMVILATGIKPNSELAKDSGLKLGETGAIWVNE-KFQTSVPNIYAAGDVAESHNIITKKPAWVPLAWGANKMGRIAGE  299 (427)
T ss_pred             EeCEEEECCCccCCHHHHHhcCcccCCCCCEEECC-CcEeCCCCEEEeeeeEEeeeccCCCceeeechHHHHHHHHHHHH
Confidence            9999999999999998876 467788889999998 688999999999999852         13578899999999999


Q ss_pred             HHHH
Q 016820          363 EAEH  366 (382)
Q Consensus       363 ~i~~  366 (382)
                      ||..
T Consensus       300 ni~g  303 (427)
T TIGR03385       300 NIAG  303 (427)
T ss_pred             HhcC
Confidence            9963

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=7.1e-29  Score=215.18  Aligned_cols=301  Identities=19%  Similarity=0.230  Sum_probs=217.1

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEec---c-cCCCCCCCcceecCCCccc------------------CCC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG---W-MANDIAPGGQLTTTSDVEN------------------FPG  112 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~---~-~~~~~~~gg~~~~~~~~~~------------------~~~  112 (382)
                      ...++|++|||||.+||+||.+++.+|.+|.++|-   . .+..|-.||++....+++.                  |..
T Consensus        16 ~sydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyGW   95 (503)
T KOG4716|consen   16 SSYDYDLIVIGGGSGGLACAKEAADLGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYGW   95 (503)
T ss_pred             ccCCccEEEEcCCcchhhHHHHHHhcCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhCC
Confidence            34679999999999999999999999999999993   1 2334667777765443211                  100


Q ss_pred             C-C---CCCChHHHHHHHHHHHHHcC----cEEEEeeEEEEEec-----CCcEEEEE-CC--eEEEcCEEEEccCCCCcC
Q 016820          113 F-P---QGILGGDLMDRCRNQSLRFG----TQIFTETVSKVDFK-----SRPFKVFT-DS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       113 ~-~---~~~~~~~~~~~~~~~~~~~g----i~~~~~~v~~i~~~-----~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~  176 (382)
                      . +   -..++..+.+..+...+..+    +.++..+|.-++.-     ...+.... ++  ..+.++.+|+|||.+|++
T Consensus        96 ~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RPrY  175 (503)
T KOG4716|consen   96 NVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRPRY  175 (503)
T ss_pred             CCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCCCC
Confidence            0 0   12355667777777666553    22322244444321     11222222 22  348899999999999999


Q ss_pred             CCCCCCccccC--CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-hHHH---HHHh
Q 016820          177 LQFPGSDAFWN--RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-SKIM---QNRA  250 (382)
Q Consensus       177 ~~~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-~~~~---~~~~  250 (382)
                      |.+||..++..  +.+++.        ...+.+.+|||+|++++|+|.+|.-.|.+||+..|+-.++. .+.+   ..+.
T Consensus       176 p~IpG~~Ey~ITSDDlFsl--------~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRSI~LrGFDqdmae~v~~~  247 (503)
T KOG4716|consen  176 PDIPGAKEYGITSDDLFSL--------PYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRSILLRGFDQDMAELVAEH  247 (503)
T ss_pred             CCCCCceeeeecccccccc--------cCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEEeecccccHHHHHHHHHH
Confidence            99999877333  233333        33467799999999999999999999999999999876643 2222   2466


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---cccccc-CCCceeeCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLH-SDGYIITKP  326 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~-~~g~i~vd~  326 (382)
                      |++.||.+.....+.+++..++|+..  |......++++.+-++|.|+|+.|+.+.+.-+.   .++..| .+|.|.+|+
T Consensus       248 m~~~Gikf~~~~vp~~Veq~~~g~l~--v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~~l~L~~~GVk~n~ks~KI~v~~  325 (503)
T KOG4716|consen  248 MEERGIKFLRKTVPERVEQIDDGKLR--VFYKNTNTGEEGEEEYDTVLWAIGRKALTDDLNLDNAGVKTNEKSGKIPVDD  325 (503)
T ss_pred             HHHhCCceeecccceeeeeccCCcEE--EEeecccccccccchhhhhhhhhccccchhhcCCCccceeecccCCccccCh
Confidence            88899999999899999998887522  333433344445668999999999999988665   456664 468999998


Q ss_pred             CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       327 ~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                       ..+|+.|+|||+||+....+.....|++.|+..|+++-.
T Consensus       326 -~e~t~vp~vyAvGDIl~~kpELTPvAIqsGrlLa~Rlf~  364 (503)
T KOG4716|consen  326 -EEATNVPYVYAVGDILEDKPELTPVAIQSGRLLARRLFA  364 (503)
T ss_pred             -HHhcCCCceEEecceecCCcccchhhhhhchHHHHHHhc
Confidence             789999999999999987888899999999999988754

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=99.96  E-value=2e-27  Score=246.89  Aligned_cols=285  Identities=22%  Similarity=0.249  Sum_probs=204.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc-Cc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF-GT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi  135 (382)
                      ..+||+||||||||+++|..|++.|++|+|+|    .....||.+....      .........++...+.+.+..+ ++
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar~G~~V~liD----~~~~~GG~~~~~~------~~~~g~~~~~~~~~~~~~l~~~~~v  231 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAARAGARVILVD----EQPEAGGSLLSEA------ETIDGKPAADWAAATVAELTAMPEV  231 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhCCCcEEEEe----cCCCCCCeeeccc------cccCCccHHHHHHHHHHHHhcCCCc
Confidence            46899999999999999999999999999999    5556788775422      1112344566666666666666 48


Q ss_pred             EEEEe-eEEEEEecCCcEEEE-------------ECC--eEEEcCEEEEccCCCCcCCCCCCCccccCCCccee----ee
Q 016820          136 QIFTE-TVSKVDFKSRPFKVF-------------TDS--KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISAC----AV  195 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~-------------~~~--~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~----~~  195 (382)
                      +++.+ +|..+........+.             ..+  ..+.||+||||||+.++.+++||.+.   ..+..+    .+
T Consensus       232 ~v~~~t~V~~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~r~~pipG~~~---pgV~~~~~~~~~  308 (985)
T TIGR01372       232 TLLPRTTAFGYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHERPLVFANNDR---PGVMLAGAARTY  308 (985)
T ss_pred             EEEcCCEEEEEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCCcCCCCCCCCC---CCcEEchHHHHH
Confidence            88877 677765422111111             001  15899999999999999999999764   222221    11


Q ss_pred             ccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820          196 CDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK  274 (382)
Q Consensus       196 ~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~  274 (382)
                      +... ....+++++|+|+|++++++|..|.+.|. .|+++++.+.+  ...+ .+.+++.||+++.+..+.++..++.  
T Consensus       309 l~~~-~~~~gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~~~~--~~~l-~~~L~~~GV~i~~~~~v~~i~g~~~--  382 (985)
T TIGR01372       309 LNRY-GVAPGKRIVVATNNDSAYRAAADLLAAGIAVVAIIDARADV--SPEA-RAEARELGIEVLTGHVVAATEGGKR--  382 (985)
T ss_pred             HHhh-CcCCCCeEEEECCCHHHHHHHHHHHHcCCceEEEEccCcch--hHHH-HHHHHHcCCEEEcCCeEEEEecCCc--
Confidence            1111 13357999999999999999999999994 57888776644  2233 3457788999999999999987653  


Q ss_pred             eeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCC--CceeeCCCCCcCCCCceEEecccCCchhhH
Q 016820          275 VLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSD--GYIITKPGTTHTSVPGVFAAGDVQDKKYRQ  349 (382)
Q Consensus       275 ~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~--g~i~vd~~~~~t~~~~vya~GD~~~~~~~~  349 (382)
                       ++.|++... .+++..+++|.|+++.|.+|++.++.   +.+.+++.  +|+.      .|+.|+||++||+.+.  ..
T Consensus       383 -v~~V~l~~~-~g~~~~i~~D~V~va~G~~Pnt~L~~~lg~~~~~~~~~~~~~~------~t~v~gVyaaGD~~g~--~~  452 (985)
T TIGR01372       383 -VSGVAVARN-GGAGQRLEADALAVSGGWTPVVHLFSQRGGKLAWDAAIAAFLP------GDAVQGCILAGAANGL--FG  452 (985)
T ss_pred             -EEEEEEEec-CCceEEEECCEEEEcCCcCchhHHHHhcCCCeeeccccCceec------CCCCCCeEEeeccCCc--cC
Confidence             455666631 24557899999999999999999875   23333332  2221      3668999999999964  47


Q ss_pred             HHHHHhhHHHHHHHHHHHHHH
Q 016820          350 AVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       350 ~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +..|+.+|..||..|+..+..
T Consensus       453 ~~~A~~eG~~Aa~~i~~~lg~  473 (985)
T TIGR01372       453 LAAALADGAAAGAAAARAAGF  473 (985)
T ss_pred             HHHHHHHHHHHHHHHHHHcCC
Confidence            788999999999999988864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=99.96  E-value=6.1e-29  Score=236.50  Aligned_cols=290  Identities=22%  Similarity=0.277  Sum_probs=222.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      +.++||||.|++|..+..++.+.   -++++++-..    ..+.-....     --+.++...+.+++.-.-..+.++++
T Consensus         3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~E----p~~nY~Ri~-----Ls~vl~~~~~~edi~l~~~dwy~~~~   73 (793)
T COG1251           3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEE----PRPNYNRIL-----LSSVLAGEKTAEDISLNRNDWYEENG   73 (793)
T ss_pred             ceeEEEEecccchhhHHHHHHhcCcccceEEEeccC----CCcccccee-----eccccCCCccHHHHhccchhhHHHcC
Confidence            46899999999999999999884   4788888632    111111110     00122223455666666677889999


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEE
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      |+++.+ .|+.||.+++.++.. .+.++.||.||+|||+.|..+++||.+.   +..+++.+.......  ....++.+|
T Consensus        74 i~L~~~~~v~~idr~~k~V~t~-~g~~~~YDkLilATGS~pfi~PiPG~~~~~v~~~R~i~D~~am~~~--ar~~~~avV  150 (793)
T COG1251          74 ITLYTGEKVIQIDRANKVVTTD-AGRTVSYDKLIIATGSYPFILPIPGSDLPGVFVYRTIDDVEAMLDC--ARNKKKAVV  150 (793)
T ss_pred             cEEEcCCeeEEeccCcceEEcc-CCcEeecceeEEecCccccccCCCCCCCCCeeEEecHHHHHHHHHH--HhccCCcEE
Confidence            999999 799999988754332 5667999999999999999999999885   333444443322222  223456899


Q ss_pred             EcCCchHHHHHHHHhhcCCEEEEEEeCCCC------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       211 vG~G~~a~e~a~~l~~~g~~v~~~~~~~~~------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      ||+|..|+|.|.-|.+.|.++++++-.+.+      +...+++++.+++.|++++++...+++.....   ++++++++ 
T Consensus       151 IGGGLLGlEaA~~L~~~Gm~~~Vvh~~~~lMerQLD~~ag~lL~~~le~~Gi~~~l~~~t~ei~g~~~---~~~vr~~D-  226 (793)
T COG1251         151 IGGGLLGLEAARGLKDLGMEVTVVHIAPTLMERQLDRTAGRLLRRKLEDLGIKVLLEKNTEEIVGEDK---VEGVRFAD-  226 (793)
T ss_pred             EccchhhhHHHHHHHhCCCceEEEeecchHHHHhhhhHHHHHHHHHHHhhcceeecccchhhhhcCcc---eeeEeecC-
Confidence            999999999999999999999999998876      34566677889999999999988888887443   66788776 


Q ss_pred             cCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHH
Q 016820          285 VTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMA  360 (382)
Q Consensus       285 ~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~a  360 (382)
                        +  ..+++|.|++++|.+|+..+.. +++.+++  .|.||+ +++|++|+|||+|+|+.+.   +.....+..|++.+
T Consensus       227 --G--~~i~ad~VV~a~GIrPn~ela~~aGlavnr--GIvvnd-~mqTsdpdIYAvGEcae~~g~~yGLVaP~yeq~~v~  299 (793)
T COG1251         227 --G--TEIPADLVVMAVGIRPNDELAKEAGLAVNR--GIVVND-YMQTSDPDIYAVGECAEHRGKVYGLVAPLYEQAKVL  299 (793)
T ss_pred             --C--CcccceeEEEecccccccHhHHhcCcCcCC--Ceeecc-cccccCCCeeehhhHHHhcCccceehhHHHHHHHHH
Confidence              5  6799999999999999999886 6888877  889998 8999999999999999643   56677788888888


Q ss_pred             HHHHHHHHHH
Q 016820          361 ALEAEHYLQE  370 (382)
Q Consensus       361 a~~i~~~l~~  370 (382)
                      |.++.....+
T Consensus       300 a~hl~~~~~~  309 (793)
T COG1251         300 ADHLCGGEAE  309 (793)
T ss_pred             HHHhccCccc
Confidence            8877665443

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=99.95  E-value=7.5e-27  Score=226.02  Aligned_cols=284  Identities=23%  Similarity=0.283  Sum_probs=173.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC-------------------CcccCCC------C
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS-------------------DVENFPG------F  113 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~-------------------~~~~~~~------~  113 (382)
                      ++|+|||||++||.+|+.|.+.|++++++|    +...+||.|....                   ....|+.      +
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE----~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~   77 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFE----KSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDY   77 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEE----SSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEe----cCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCC
Confidence            689999999999999999999999999999    6778888886421                   1111222      2


Q ss_pred             CCCCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecC-----CcEEEEECC----eEEEcCEEEEccCC--CCcCCC-
Q 016820          114 PQGILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKS-----RPFKVFTDS----KSVLADTVIVATGA--VAKKLQ-  178 (382)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~-----~~~~v~~~~----~~~~~d~lvlA~G~--~~~~~~-  178 (382)
                      |..+...++.+|++.+++++++.  +..+ +|.++++.+     +.|.+.++.    .+-.+|+||+|+|.  .|+.|. 
T Consensus        78 p~f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~  157 (531)
T PF00743_consen   78 PDFPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEP  157 (531)
T ss_dssp             SSSEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB---
T ss_pred             CCCCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChh
Confidence            34567899999999999999874  5556 688887754     358887632    23569999999998  588884 


Q ss_pred             -CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchH-------------
Q 016820          179 -FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK-------------  244 (382)
Q Consensus       179 -~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~-------------  244 (382)
                       +||.+.|.+..+|...|.+..  .+.+|+|+|||+|.+|+++|.+|.+..++|++..|++.+...+             
T Consensus       158 ~~~G~e~F~G~i~HS~~yr~~~--~f~gKrVlVVG~g~Sg~DIa~el~~~a~~v~~s~R~~~wv~pr~~~~G~P~D~~~~  235 (531)
T PF00743_consen  158 SFPGLEKFKGEIIHSKDYRDPE--PFKGKRVLVVGGGNSGADIAVELSRVAKKVYLSTRRGAWVLPRYWDNGYPFDMVFS  235 (531)
T ss_dssp             --CTGGGHCSEEEEGGG--TGG--GGTTSEEEEESSSHHHHHHHHHHTTTSCCEEEECC---------------------
T ss_pred             hhhhhhcCCeeEEccccCcChh--hcCCCEEEEEeCCHhHHHHHHHHHHhcCCeEEEEeccccccccccccccccccccc
Confidence             899999988999999888776  7889999999999999999999999999999888877651100             


Q ss_pred             -----------------HHHHHhc--------------------------------cCCCcEEEcCceeEEEEecCCcee
Q 016820          245 -----------------IMQNRAL--------------------------------TNPKIDVIWNSVVLEAYGEGDKKV  275 (382)
Q Consensus       245 -----------------~~~~~~l--------------------------------~~~gv~~~~~~~v~~i~~~~~g~~  275 (382)
                                       .+.++.+                                ....|.+  ...|.+++++     
T Consensus       236 ~R~~~~l~~~lp~~~~~~~~~~~l~~~~~~~~~gl~p~~~~~~~~~~ind~l~~~i~~G~i~v--k~~I~~~~~~-----  308 (531)
T PF00743_consen  236 TRFSSFLQKNLPESLSNWLLEKKLNKRFDHENYGLKPKHRFFSQHPTINDELPNRIRSGRIKV--KPDIKRFTEN-----  308 (531)
T ss_dssp             -----------------------------------------------------------------EE-EEEE-SS-----
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc-----
Confidence                             0000000                                0000111  0112222211     


Q ss_pred             eeeEEEEeccCCceEE-EecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC--CCCceEEecccCCchhhHHHH
Q 016820          276 LGGLKVKNLVTGQVSD-LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT--SVPGVFAAGDVQDKKYRQAVT  352 (382)
Q Consensus       276 ~~~v~~~~~~~~~~~~-~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t--~~~~vya~GD~~~~~~~~~~~  352 (382)
                        +|.+++   |  .. .++|.||+|||++...++++..+....++.+....+.+..  .+|++..+|=+... ......
T Consensus       309 --~v~F~D---G--s~~e~vD~II~~TGY~~~fpFL~~~~~~~~~~~~~LYk~vfp~~~~~ptLafIG~~~~~-g~~fp~  380 (531)
T PF00743_consen  309 --SVIFED---G--STEEDVDVIIFCTGYKFSFPFLDESLIKVDDNRVRLYKHVFPPNLDHPTLAFIGLVQPF-GSIFPI  380 (531)
T ss_dssp             --EEEETT---S--EEEEE-SEEEE---EE---TTB-TTTT-S-SSSSSEETTTEETETTSTTEEESS-SBSS-S-HHHH
T ss_pred             --cccccc---c--ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccc
Confidence              144432   3  44 4799999999999999999844332334444455544433  45899999987531 122334


Q ss_pred             HHhhHHHHHHH
Q 016820          353 AAGTGCMAALE  363 (382)
Q Consensus       353 a~~~g~~aa~~  363 (382)
                      +-.||+.+|.-
T Consensus       381 ~ElQArw~a~v  391 (531)
T PF00743_consen  381 FELQARWAARV  391 (531)
T ss_dssp             HHHHHHHHHHH
T ss_pred             ccccccccccc
Confidence            55666655543

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=99.92  E-value=2.6e-24  Score=203.06  Aligned_cols=291  Identities=28%  Similarity=0.312  Sum_probs=212.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+||||||+|+++|..|++.|++|+++|    .....||.+.+        ++|......++.+...+.+++.|++|
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e----~~~~~GGll~y--------GIP~~kl~k~i~d~~i~~l~~~Gv~~  190 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFE----RVALDGGLLLY--------GIPDFKLPKDILDRRLELLERSGVEF  190 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeC----CcCCCceeEEe--------cCchhhccchHHHHHHHHHHHcCeEE
Confidence            3899999999999999999999999999999    67788888886        56777778899999999999999999


Q ss_pred             EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc--------ccCCCc-ceeeecc-CCCCCCCCC
Q 016820          138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA--------FWNRGI-SACAVCD-GAAPIFRDK  206 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~--------~~~~~~-~~~~~~~-~~~~~~~~~  206 (382)
                      +.+.....+..       .+.-.-.||++++|+|. .|+..++||.+.        |..... ....... .......++
T Consensus       191 ~~~~~vG~~it-------~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk  263 (457)
T COG0493         191 KLNVRVGRDIT-------LEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGK  263 (457)
T ss_pred             EEcceECCcCC-------HHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCC
Confidence            88853332211       11222356999999999 688889999864        111110 0000000 111133459


Q ss_pred             cEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC---c----chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF---R----ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~---~----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      +++|||+|.++++++....+.|. +|+.+.+...-   .    ....+.-+....+|+...+.....++..+.+|+ +..
T Consensus       264 ~vvVIGgG~Ta~D~~~t~~r~Ga~~v~~~~~~~~~~~~~~~~~~~~~~~~~~a~eeg~~~~~~~~~~~~~~~e~Gr-V~~  342 (457)
T COG0493         264 RVVVIGGGDTAMDCAGTALRLGAKSVTCFYREDRDDETNEWPTWAAQLEVRSAGEEGVERLPFVQPKAFIGNEGGR-VTG  342 (457)
T ss_pred             eEEEECCCCCHHHHHHHHhhcCCeEEEEeccccccccCCcccccchhhhhhhhhhcCCcccccCCceeEeecCCCc-Eee
Confidence            99999999999999999999986 67777522211   1    111112234556788888888888998877764 333


Q ss_pred             EEEEec----------------cCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEe
Q 016820          279 LKVKNL----------------VTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       279 v~~~~~----------------~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~  339 (382)
                      +.+...                ..++...+++|.++.+.|+.++.....   ..+..+..|.+.+++...+|+.|++||.
T Consensus       343 ~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~vfa~  422 (457)
T COG0493         343 VKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAADTVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPGVFAG  422 (457)
T ss_pred             eecccccccCcccccccccCccccCceEEehHHHHHHHhccCCCcccccccccccccCCCCceecccccccccCCCeeeC
Confidence            322221                125557889999999999998865532   2567888999999995559999999999


Q ss_pred             cccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          340 GDVQDKKYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       340 GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ||+... ......|+.+|+.+|+.|..++.
T Consensus       423 gD~~~g-~~~vv~ai~eGr~aak~i~~~~l  451 (457)
T COG0493         423 GDAVRG-AALVVWAIAEGREAAKAIDKELL  451 (457)
T ss_pred             ceeccc-hhhhhhHHhhchHHHHhhhHHHH
Confidence            999974 57899999999999999994443

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=99.90  E-value=6.2e-23  Score=176.92  Aligned_cols=169  Identities=28%  Similarity=0.399  Sum_probs=120.5

Q ss_pred             EEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCc---------c---cCCCC--------------C
Q 016820           62 CIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDV---------E---NFPGF--------------P  114 (382)
Q Consensus        62 vIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~---------~---~~~~~--------------~  114 (382)
                      +|||||++|+++|..|.++|.+ ++|+|    ....+||.|......         .   .++.+              .
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e----~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLE----RNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPH   76 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEE----SSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEe----CCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCc
Confidence            7999999999999999999999 99999    555677776531100         0   00110              1


Q ss_pred             CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEEccCC--CCcCCCCCC-CccccCCC
Q 016820          115 QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIVATGA--VAKKLQFPG-SDAFWNRG  189 (382)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~--~~~~~~~~g-~~~~~~~~  189 (382)
                      .....+++.+|+++++++++++++.+ +|+++..+++.|.+++.++ ++++|+||+|||.  .|+.|.++| ...   ..
T Consensus        77 ~~~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~---~~  153 (203)
T PF13738_consen   77 DFPSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR---PI  153 (203)
T ss_dssp             SSEBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS---EE
T ss_pred             ccCCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc---ce
Confidence            13466889999999999999998877 6999999998999999876 8999999999997  788899998 222   44


Q ss_pred             cceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          190 ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      +|...+.+..  ...+++|+|||+|.+|++++..|.+.+.+|+++.|++.
T Consensus       154 ~h~~~~~~~~--~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~~R~~~  201 (203)
T PF13738_consen  154 IHSADWRDPE--DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLVTRSPI  201 (203)
T ss_dssp             EEGGG-STTG--GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEEESS--
T ss_pred             EehhhcCChh--hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEEecCCC
Confidence            5555554444  56789999999999999999999999999999999875

...

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=5.7e-22  Score=186.32  Aligned_cols=232  Identities=22%  Similarity=0.290  Sum_probs=172.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-------------------ccCCCCC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-------------------ENFPGFP---  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-------------------~~~~~~~---  114 (382)
                      ..++|+|||||+|||.+|+.|.+.|++++++|    +...+||.|.+....                   ..++.+|   
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfE----r~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~   80 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFE----RTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPE   80 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEE----ecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcc
Confidence            46899999999999999999999999999999    677889988766211                   1222222   


Q ss_pred             ---C-CCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecC-CcEEEEECC-----eEEEcCEEEEccCCC--CcCCCC
Q 016820          115 ---Q-GILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKS-RPFKVFTDS-----KSVLADTVIVATGAV--AKKLQF  179 (382)
Q Consensus       115 ---~-~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~-~~~~v~~~~-----~~~~~d~lvlA~G~~--~~~~~~  179 (382)
                         . .++..++.+||+.+++++++.  +..+ +|..++... +.|.+.+.+     ...-+|.|++|+|..  |+.|.+
T Consensus        81 ~~~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~  160 (448)
T KOG1399|consen   81 RDPRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQI  160 (448)
T ss_pred             cCcccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcC
Confidence               1 256679999999999999874  4444 577888877 688887632     257799999999996  899999


Q ss_pred             CC--CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcE
Q 016820          180 PG--SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKID  257 (382)
Q Consensus       180 ~g--~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~  257 (382)
                      +|  .+.|.+..+|.+.|....  .+.+|+|+|||+|++|+|++..+++...+|++..+ . +......  ......++.
T Consensus       161 ~g~~~~~f~G~~iHS~~Yk~~e--~f~~k~VlVIG~g~SG~DIs~d~~~~ak~v~~~~~-~-~~~~~~~--~~~~~~~~~  234 (448)
T KOG1399|consen  161 PGPGIESFKGKIIHSHDYKSPE--KFRDKVVLVVGCGNSGMDISLDLLRVAKEVHLSVV-S-PKVHVEP--PEILGENLW  234 (448)
T ss_pred             CCCchhhcCCcceehhhccCcc--cccCceEEEECCCccHHHHHHHHHHhccCcceeee-c-ccccccc--cceeecceE
Confidence            88  457888999999998777  78899999999999999999999988888887765 1 0000000  001112333


Q ss_pred             EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       258 ~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      .+  ..|+..++++       +.+..    ......+|.+|+|||+.-..++++
T Consensus       235 ~~--~~i~~~~e~~-------~~~~~----~~~~~~~D~ii~ctgy~y~fPfl~  275 (448)
T KOG1399|consen  235 QV--PSIKSFTEDG-------SVFEK----GGPVERVDRIIFCTGYKYKFPFLE  275 (448)
T ss_pred             Ec--cccccccCcc-------eEEEc----CceeEEeeeEEEeeeeEeecceec
Confidence            32  2266666655       44443    235678999999999999888887

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=99.90  E-value=1.3e-22  Score=186.65  Aligned_cols=245  Identities=23%  Similarity=0.233  Sum_probs=150.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCCCcccC---------CCCC-------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTSDVENF---------PGFP-------------  114 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------~~~~-------------  114 (382)
                      .+|+++||.||++|++|..|.+.+ .++.++|+.....|.+|..+.....-..+         |.-+             
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl   81 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL   81 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence            479999999999999999999996 99999998777777776654432211111         1000             


Q ss_pred             --------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC----cEEEEE-----CCeEEEcCEEEEccCCCCcC
Q 016820          115 --------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR----PFKVFT-----DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       115 --------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~----~~~v~~-----~~~~~~~d~lvlA~G~~~~~  176 (382)
                              ..+...++.+|+++.+++++-.+..+ +|++|++..+    .|.|.+     ++..+.++.||+|+|..|..
T Consensus        82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~i  161 (341)
T PF13434_consen   82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPRI  161 (341)
T ss_dssp             HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred             hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCCC
Confidence                    13577899999999999998657667 7999988765    388887     34569999999999999888


Q ss_pred             CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCCcc------------
Q 016820          177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSFRA------------  242 (382)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~~~------------  242 (382)
                      |..........+.+|..++..........++|+|||+|.+|.|++..|.+.+.  +|+++.|++.+..            
T Consensus       162 P~~~~~~~~~~~v~Hss~~~~~~~~~~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~  241 (341)
T PF13434_consen  162 PEWFQDLPGSPRVFHSSEYLSRIDQSLAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFS  241 (341)
T ss_dssp             -GGGGGGTT-TTEEEGGGHHHHHT-----EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGS
T ss_pred             CcchhhcCCCCCEEEehHhhhccccccCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcC
Confidence            75332211112445555554443225568999999999999999999998874  8999999997710            


Q ss_pred             ------------------------------hHH--------HH-HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          243 ------------------------------SKI--------MQ-NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       243 ------------------------------~~~--------~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                                                    ...        +. +++..+..++++.++.|..++..++|+  ..+.+.+
T Consensus       242 P~~v~~f~~l~~~~R~~~l~~~~~~ny~~i~~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~--~~l~~~~  319 (341)
T PF13434_consen  242 PEYVDYFYSLPDEERRELLREQRHTNYGGIDPDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGG--VRLTLRH  319 (341)
T ss_dssp             HHHHHHHHTS-HHHHHHHHHHTGGGTSSEB-HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SS--EEEEEEE
T ss_pred             chhhhhhhcCCHHHHHHHHHHhHhhcCCCCCHHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCE--EEEEEEE
Confidence                                          000        00 122334568999999999999988543  2356666


Q ss_pred             ccCCceEEEecCeEEEeeCCC
Q 016820          284 LVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       284 ~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      ...+....+.+|.||+|||++
T Consensus       320 ~~~~~~~~~~~D~VilATGy~  340 (341)
T PF13434_consen  320 RQTGEEETLEVDAVILATGYR  340 (341)
T ss_dssp             TTT--EEEEEESEEEE---EE
T ss_pred             CCCCCeEEEecCEEEEcCCcc
Confidence            556667889999999999986

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=99.89  E-value=8.4e-22  Score=188.49  Aligned_cols=287  Identities=21%  Similarity=0.193  Sum_probs=192.4

Q ss_pred             EEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCC-ChHHHHHHHHHHHHHcCcEE
Q 016820           61 VCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI-LGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        61 vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ++|||+|++|+++|..+.+.  +.+++++...........+....         ..... ....+..... ...+.++++
T Consensus         1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~-~~~~~~i~~   70 (415)
T COG0446           1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLY---------VGGGIASLEDLRYPPR-FNRATGIDV   70 (415)
T ss_pred             CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchH---------HhcccCCHHHhcccch-hHHhhCCEE
Confidence            58999999999999999886  56787776321111111100000         00001 1111111111 224668888


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCc-cccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD-AFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ..+ +|..++++.+.+.+.  ++.+.||++++|||.+|..++..... .+..+...........  ....++++|+|+|+
T Consensus        71 ~~~~~v~~id~~~~~v~~~--~g~~~yd~LvlatGa~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~  146 (415)
T COG0446          71 RTGTEVTSIDPENKVVLLD--DGEIEYDYLVLATGARPRPPPISDWEGVVTLRLREDAEALKGG--AEPPKDVVVVGAGP  146 (415)
T ss_pred             eeCCEEEEecCCCCEEEEC--CCcccccEEEEcCCCcccCCCccccCceEEECCHHHHHHHHHH--HhccCeEEEECCcH
Confidence            887 699999988865554  33899999999999999887611111 0111222222222221  11258999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV  289 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~  289 (382)
                      .|+++|..+.+.|++|++++..+.+..      ......+.+++.||+++++..+.+++...+..  .......   ..+
T Consensus       147 ~gle~A~~~~~~G~~v~l~e~~~~~~~~~~~~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~~~~--~~~~~~~---~~~  221 (415)
T COG0446         147 IGLEAAEAAAKRGKKVTLIEAADRLGGQLLDPEVAEELAELLEKYGVELLLGTKVVGVEGKGNTL--VVERVVG---IDG  221 (415)
T ss_pred             HHHHHHHHHHHcCCeEEEEEcccccchhhhhHHHHHHHHHHHHHCCcEEEeCCceEEEEcccCcc--eeeEEEE---eCC
Confidence            999999999999999999999887732      22333567888999999999999999987531  1100122   334


Q ss_pred             EEEecCeEEEeeCCCCChhhhcccc--cccCCCceeeCCCCCcCC-CCceEEecccCCch---------hhHHHHHHhhH
Q 016820          290 SDLKVSGLFFAIGHEPATKFVDGQL--DLHSDGYIITKPGTTHTS-VPGVFAAGDVQDKK---------YRQAVTAAGTG  357 (382)
Q Consensus       290 ~~~~~D~vi~~~G~~p~~~~~~~~~--~~~~~g~i~vd~~~~~t~-~~~vya~GD~~~~~---------~~~~~~a~~~g  357 (382)
                      ..+++|.+++++|.+|+..+.....  .....|++.||+ .++++ .++||++|||+...         ...+..+..++
T Consensus       222 ~~~~~d~~~~~~g~~p~~~l~~~~~~~~~~~~g~i~v~~-~~~~~~~~~v~a~GD~~~~~~~~~~~~~~~~~~~~a~~~~  300 (415)
T COG0446         222 EEIKADLVIIGPGERPNVVLANDALPGLALAGGAVLVDE-RGGTSKDPDVYAAGDVAEIPAAETGKGGRIALWAIAVAAG  300 (415)
T ss_pred             cEEEeeEEEEeecccccHHHHhhCccceeccCCCEEEcc-ccccCCCCCEEeccceEeeecccCCceeeeechhhHhhhh
Confidence            6799999999999999977776433  456788999999 66666 99999999987532         33456777888


Q ss_pred             HHHHHHHHHH
Q 016820          358 CMAALEAEHY  367 (382)
Q Consensus       358 ~~aa~~i~~~  367 (382)
                      +.++.++...
T Consensus       301 ~i~~~~~~~~  310 (415)
T COG0446         301 RIAAENIAGA  310 (415)
T ss_pred             HHHHHHhccc
Confidence            8888877743

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=99.88  E-value=4.3e-21  Score=191.88  Aligned_cols=275  Identities=18%  Similarity=0.164  Sum_probs=174.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--C---------------------C-CCCcceecCCCcccCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--D---------------------I-APGGQLTTTSDVENFP  111 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~---------------------~-~~gg~~~~~~~~~~~~  111 (382)
                      ...++|+||||||||+++|+.|++.|++|+++|+....  .                     . ..||...+        
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~y--------  452 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEY--------  452 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccccccccccchhhhhccchhhhccccCCccccc--------
Confidence            35689999999999999999999999999999952100  0                     0 02222211        


Q ss_pred             CCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCC-CCcCCCCCCCccccCC
Q 016820          112 GFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGA-VAKKLQFPGSDAFWNR  188 (382)
Q Consensus       112 ~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~-~~~~~~~~g~~~~~~~  188 (382)
                      ++|. ....+..+.++..... .+++++.+.....+...       +. ....||+|++|||+ .|+.+++||.+.   .
T Consensus       453 GIp~-R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~-------edl~~~gyDAV~IATGA~kpr~L~IPGeda---~  521 (1028)
T PRK06567        453 GITV-RWDKNNLDILRLILERNNNFKYYDGVALDFNITK-------EQAFDLGFDHIAFCIGAGQPKVLDIENFEA---K  521 (1028)
T ss_pred             Cccc-cchHHHHHHHHHHHhcCCceEEECCeEECccCCH-------HHHhhcCCCEEEEeCCCCCCCCCCCCCccC---C
Confidence            1221 1123333333333222 24555556432222111       11 23579999999999 799999999764   1


Q ss_pred             Cccee-eecc-----------CCCCCCCCCcEEEEcCCchHHHHHHHHhh------------------------------
Q 016820          189 GISAC-AVCD-----------GAAPIFRDKPLAVIGGGDSAMEEANFLTK------------------------------  226 (382)
Q Consensus       189 ~~~~~-~~~~-----------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~------------------------------  226 (382)
                      .+... +++.           .......+++|+|||||++|+|+|.....                              
T Consensus       522 GV~sA~DfL~~l~~~~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~  601 (1028)
T PRK06567        522 GVKTASDFLMTLQSGGAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFI  601 (1028)
T ss_pred             CeEEHHHHHHHHhhcccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHH
Confidence            11110 0000           00012246899999999999999983321                              


Q ss_pred             ---------------------cCCEEEEEEeCCCCc--ch---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          227 ---------------------YGSKVYIIHRRDSFR--AS---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       227 ---------------------~g~~v~~~~~~~~~~--~~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                                           .| .|++++|+..-.  ..   .+..+. ..++||+++....+.+|..++.|+ +.+++
T Consensus       602 ~h~r~~g~~~~~~~v~~l~~~~G-~VtIvYRr~~~empA~~~~~eEv~~-A~eEGV~f~~~~~P~~i~~d~~g~-v~~l~  678 (1028)
T PRK06567        602 AHAKLFKEAKNNEELRKVFNKLG-GATVYYRGRLQDSPAYKLNHEELIY-ALALGVDFKENMQPLRINVDKYGH-VESVE  678 (1028)
T ss_pred             HHHHhhcchhccchhhhhhccCC-ceEEEecCChhhCCCCCCCHHHHHH-HHHcCcEEEecCCcEEEEecCCCe-EEEEE
Confidence                                 22 288998886442  21   222223 345799999999999998876553 66676


Q ss_pred             EEecc-----------C-C-------------ceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCc
Q 016820          281 VKNLV-----------T-G-------------QVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       281 ~~~~~-----------~-~-------------~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      +....           . +             .+..++||.|+.|+|..|++.+..                      .+
T Consensus       679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~~~~~~~~----------------------~~  736 (1028)
T PRK06567        679 FENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIENNTQFDE----------------------DK  736 (1028)
T ss_pred             EEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccCCcccccc----------------------cc
Confidence            65322           0 1             347899999999999999988731                      11


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      +-.+||+-+...++...|+.+|+.++.+|.++|....+.
T Consensus       737 ~s~~~d~~~~f~Gtvv~A~as~k~~~~~i~~~l~~~~~~  775 (1028)
T PRK06567        737 YSYFGDCNPKYSGSVVKALASSKEGYDAINKKLINNNPS  775 (1028)
T ss_pred             cccccCCCCccccHHHHHHHHHHhHHHHHHHHHhhCCCC
Confidence            233455554444588999999999999999999876554

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.4e-21  Score=191.23  Aligned_cols=290  Identities=23%  Similarity=0.293  Sum_probs=190.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .-++|.|||+||+||+||-+|.+.|+.|+++|    ....+||.+.+        ++|.......+.++-...+.+.||+
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk~gh~v~vye----r~dr~ggll~y--------gipnmkldk~vv~rrv~ll~~egi~ 1851 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNKAGHTVTVYE----RSDRVGGLLMY--------GIPNMKLDKFVVQRRVDLLEQEGIR 1851 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhhcCcEEEEEE----ecCCcCceeee--------cCCccchhHHHHHHHHHHHHhhCce
Confidence            45899999999999999999999999999999    67789998886        5666566667778777888899999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc--------ccC---CCcceeeeccCCCCCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA--------FWN---RGISACAVCDGAAPIFR  204 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~--------~~~---~~~~~~~~~~~~~~~~~  204 (382)
                      |+.++  .|.+   .  +..+.-.-..|.+|+|+|+ .|+..++||-+.        |..   +.+..... +..-....
T Consensus      1852 f~tn~--eigk---~--vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~-d~~~~~~~ 1923 (2142)
T KOG0399|consen 1852 FVTNT--EIGK---H--VSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVL-DGNYISAK 1923 (2142)
T ss_pred             EEeec--cccc---c--ccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhcccc-ccceeccC
Confidence            98874  2221   1  2223334578999999999 699999999875        100   11111111 11111345


Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCcc-------------------hHHHHHHhcc-CCC-cEEEc--
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFRA-------------------SKIMQNRALT-NPK-IDVIW--  260 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~~-------------------~~~~~~~~l~-~~g-v~~~~--  260 (382)
                      +|+|+|||+|.+|-++...-.++|.+ |.-+.--+.++.                   .....++..- +.. ..+..  
T Consensus      1924 gkkvivigggdtg~dcigtsvrhg~~sv~n~ellp~pp~~ra~~npwpqwprvfrvdygh~e~~~~~g~dpr~y~vltk~ 2003 (2142)
T KOG0399|consen 1924 GKKVIVIGGGDTGTDCIGTSVRHGCKSVGNFELLPQPPPERAPDNPWPQWPRVFRVDYGHAEAKEHYGSDPRTYSVLTKR 2003 (2142)
T ss_pred             CCeEEEECCCCccccccccchhhccceecceeecCCCCcccCCCCCCccCceEEEeecchHHHHHHhCCCcceeeeeeee
Confidence            89999999999999999888888854 443433222210                   0111111111 100 11111  


Q ss_pred             ----------Ccee--EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC-hhhhc-ccccccCCCceeeCC
Q 016820          261 ----------NSVV--LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA-TKFVD-GQLDLHSDGYIITKP  326 (382)
Q Consensus       261 ----------~~~v--~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~-~~~~~-~~~~~~~~g~i~vd~  326 (382)
                                +-..  .+++.++.|.    .++.. ..++++.+++|+|+++-|+... ....+ .++..++++-+..-.
T Consensus      2004 f~~~~~g~v~gl~~vrvew~k~~~g~----w~~~e-i~~see~~eadlv~lamgf~gpe~~~~~~~~~~~d~rsni~t~~ 2078 (2142)
T KOG0399|consen 2004 FIGDDNGNVTGLETVRVEWEKDDKGR----WQMKE-INNSEEIIEADLVILAMGFVGPEKSVIEQLNLKTDPRSNILTPK 2078 (2142)
T ss_pred             eeccCCCceeeEEEEEEEEEecCCCc----eEEEE-cCCcceeeecceeeeeccccCcchhhhhhcCcccCccccccCCC
Confidence                      1111  1233444442    12211 1244578999999999999844 34433 456667776665555


Q ss_pred             CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       327 ~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ..+.+.++.+||+|||... -....+|++.|+.+|..+-..+.++.
T Consensus      2079 ~~y~t~v~~vfaagdcrrg-qslvvwai~egrq~a~~vd~~~~~~t 2123 (2142)
T KOG0399|consen 2079 DSYSTDVAKVFAAGDCRRG-QSLVVWAIQEGRQAARQVDELMGGTT 2123 (2142)
T ss_pred             ccccccccceeecccccCC-ceEEEEEehhhhHHHHHHHHHhCCcc
Confidence            5789999999999999864 35678999999999999998555544

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=99.87  E-value=5.7e-21  Score=182.16  Aligned_cols=179  Identities=26%  Similarity=0.318  Sum_probs=141.4

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecC----------CCcccCCCCCC-----CCCh
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTT----------SDVENFPGFPQ-----GILG  119 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~----------~~~~~~~~~~~-----~~~~  119 (382)
                      ...+||+|||||++|+++|+.|.+.|.+ ++|+|    +...+||.|...          .....||.+|.     ....
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~E----k~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~   81 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFE----KRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPF   81 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEE----ccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCc
Confidence            3568999999999999999999999999 99999    555667665431          12223333332     1223


Q ss_pred             HHHHHHHHHHHHHcCcEEEEe---eEEEE--EecCCcEEEEECCeE---EEcCEEEEccCC--CCcCCCCCCCccccCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE---TVSKV--DFKSRPFKVFTDSKS---VLADTVIVATGA--VAKKLQFPGSDAFWNRG  189 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~---~v~~i--~~~~~~~~v~~~~~~---~~~d~lvlA~G~--~~~~~~~~g~~~~~~~~  189 (382)
                      .++.+++..+++++++.....   .|..+  +.+.+.|+|.++++.   +.+|.||+|||.  .|+.|.++|.+.|.+..
T Consensus        82 ~~~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~  161 (443)
T COG2072          82 AEIKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRI  161 (443)
T ss_pred             ccHHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceE
Confidence            447888888888887654222   23334  444567988876543   669999999998  69999999999999999


Q ss_pred             cceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          190 ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|..++.+..  .+.+|+|+|||+|.+|++++..|.+.+.+||++.|++..
T Consensus       162 ~HS~~~~~~~--~~~GKrV~VIG~GaSA~di~~~l~~~ga~vt~~qRs~~~  210 (443)
T COG2072         162 LHSADWPNPE--DLRGKRVLVIGAGASAVDIAPELAEVGASVTLSQRSPPH  210 (443)
T ss_pred             EchhcCCCcc--ccCCCeEEEECCCccHHHHHHHHHhcCCeeEEEecCCCc
Confidence            9999999987  889999999999999999999999999999999999876

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=99.85  E-value=3.1e-21  Score=166.71  Aligned_cols=301  Identities=15%  Similarity=0.143  Sum_probs=191.9

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHc-C-CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARA-E-LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR  132 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~-g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
                      .+..++|+|||||.+|+.+|..+.+. | -+|.++|+....-.++|-++......           .-+-...-+.-+-.
T Consensus        36 ~~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~HyYQPgfTLvGgGl~-----------~l~~srr~~a~liP  104 (446)
T KOG3851|consen   36 ARKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDHYYQPGFTLVGGGLK-----------SLDSSRRKQASLIP  104 (446)
T ss_pred             cccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhcccCcceEEeccchh-----------hhhhccCccccccc
Confidence            34678999999999999999999877 3 58999996433333444433321100           00000000000111


Q ss_pred             cCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCC----cceeeecc----CCCCCCC
Q 016820          133 FGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRG----ISACAVCD----GAAPIFR  204 (382)
Q Consensus       133 ~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~----~~~~~~~~----~~~~~~~  204 (382)
                      .+..++...|.+.+++++.+... ++++|.||++|+|+|..-+...|+|..+.....    .++..+.+    .......
T Consensus       105 ~~a~wi~ekv~~f~P~~N~v~t~-gg~eIsYdylviA~Giql~y~~IkGl~Eal~tP~VcSnYSpkyvdk~y~~~~~fk~  183 (446)
T KOG3851|consen  105 KGATWIKEKVKEFNPDKNTVVTR-GGEEISYDYLVIAMGIQLDYGKIKGLVEALDTPGVCSNYSPKYVDKVYKELMNFKK  183 (446)
T ss_pred             CCcHHHHHHHHhcCCCcCeEEcc-CCcEEeeeeEeeeeeceeccchhcChHhhccCCCcccccChHHHHHHHHHHHhccC
Confidence            23444455677888888765554 567899999999999988888888876522211    01101000    0000112


Q ss_pred             CC--------cEEEEcCCchHHHHHHH-HhhcCC--EEEEEEe--CCCCc----chHHHHHHhccCCCcEEEcCceeEEE
Q 016820          205 DK--------PLAVIGGGDSAMEEANF-LTKYGS--KVYIIHR--RDSFR----ASKIMQNRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       205 ~~--------~v~VvG~G~~a~e~a~~-l~~~g~--~v~~~~~--~~~~~----~~~~~~~~~l~~~gv~~~~~~~v~~i  267 (382)
                      +.        .+---|+-.-.+-++.. +.++|.  ++.+++.  -+.+.    ..+.+ +++.++++|++.....+.++
T Consensus       184 GNAIfTfPntpiKCAGAPQKi~yise~y~Rk~gvRd~a~iiy~Tsl~~iFgVk~Y~~AL-~k~~~~rni~vn~krnLiEV  262 (446)
T KOG3851|consen  184 GNAIFTFPNTPIKCAGAPQKIMYISESYFRKRGVRDNANIIYNTSLPTIFGVKHYADAL-EKVIQERNITVNYKRNLIEV  262 (446)
T ss_pred             CceEEecCCCccccCCCchhhhhhhHHHHHHhCccccccEEEecCccceecHHHHHHHH-HHHHHhcceEeeeccceEEE
Confidence            22        22233444445556544 455553  3444443  33332    23333 46677899999999999999


Q ss_pred             EecCCceeeeeEEEEeccC-CceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcC-CCCceEEecccCCc
Q 016820          268 YGEGDKKVLGGLKVKNLVT-GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT-SVPGVFAAGDVQDK  345 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~-~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t-~~~~vya~GD~~~~  345 (382)
                      ..++..     ..+++... |...+++++++.+.+++++...+..+. -.|..||+.||..+++. .+||||+||||.+.
T Consensus       263 ~~~~~~-----AvFe~L~kPG~t~ei~yslLHv~Ppms~pe~l~~s~-~adktGfvdVD~~TlQs~kypNVFgiGDc~n~  336 (446)
T KOG3851|consen  263 RTNDRK-----AVFENLDKPGVTEEIEYSLLHVTPPMSTPEVLANSD-LADKTGFVDVDQSTLQSKKYPNVFGIGDCMNL  336 (446)
T ss_pred             eccchh-----hHHHhcCCCCceeEEeeeeeeccCCCCChhhhhcCc-ccCcccceecChhhhccccCCCceeeccccCC
Confidence            888753     34443332 666789999999999998866655544 56889999999977765 69999999999975


Q ss_pred             h-hhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          346 K-YRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       346 ~-~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      + .+++.....|....-+|+.+.++++.+-
T Consensus       337 PnsKTaAAvaaq~~vv~~nl~~~m~g~~pt  366 (446)
T KOG3851|consen  337 PNSKTAAAVAAQSPVVDKNLTQVMQGKRPT  366 (446)
T ss_pred             CchhhHHHHHhcCchhhhhHHHHhcCCCcc
Confidence            4 6777788899999999999999987643

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.84  E-value=7.6e-19  Score=157.69  Aligned_cols=312  Identities=18%  Similarity=0.203  Sum_probs=207.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCCCcccC---------CC-------------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTSDVENF---------PG-------------  112 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~~~~~~---------~~-------------  112 (382)
                      +...|++.||-||+-|++|..|...+ .++..+|+.+...|.+|..+..+..-..|         |-             
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h~   82 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEHG   82 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHcc
Confidence            35689999999999999999999985 88999999888888888765543211111         00             


Q ss_pred             ----C----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEE---EecCCc--EEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          113 ----F----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKV---DFKSRP--FKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       113 ----~----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i---~~~~~~--~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                          +    -..+.+.|+.+|+++.+..+ -.++.+ +|++|   +.+...  +.+..++..++++.||+++|.+|+.|+
T Consensus        83 RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP~  161 (436)
T COG3486          83 RLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIPP  161 (436)
T ss_pred             hHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCCh
Confidence                0    02357789999999999888 455566 68855   333221  233334557999999999999999984


Q ss_pred             C-CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc----CCEEEEEEeCCCCcc-----------
Q 016820          179 F-PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDSFRA-----------  242 (382)
Q Consensus       179 ~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~v~~~~~~~~~~~-----------  242 (382)
                      . .....  .+..|..++.....+....++|.|||+|.+|.|+...|...    ..++.|+.|+..+.+           
T Consensus       162 ~f~~l~~--~~vfHss~~~~~~~~~~~~~~V~ViG~GQSAAEi~~~Ll~~~~~~~~~l~witR~~gf~p~d~Skf~~e~F  239 (436)
T COG3486         162 CFRSLIG--ERVFHSSEYLERHPELLQKRSVTVIGSGQSAAEIFLDLLNSQPPQDYQLNWITRSSGFLPMDYSKFGLEYF  239 (436)
T ss_pred             HHhCcCc--cceeehHHHHHhhHHhhcCceEEEEcCCccHHHHHHHHHhCCCCcCccceeeeccCCCCccccchhhhhhc
Confidence            2 11111  14455555554443333445599999999999999888743    346899999988711           


Q ss_pred             --------------------------------------hHHHHHHhc--cCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          243 --------------------------------------SKIMQNRAL--TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       243 --------------------------------------~~~~~~~~l--~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                                                            .+.+.++-+  .+.++.++..+.+..+++.++|+  ..+.+.
T Consensus       240 ~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~l~~~~~~v~l~~~~ev~~~~~~G~g~--~~l~~~  317 (436)
T COG3486         240 SPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQSLGGRKPDVRLLSLSEVQSVEPAGDGR--YRLTLR  317 (436)
T ss_pred             CchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHHhcCCCCCeeeccccceeeeecCCCce--EEEEEe
Confidence                                                  011111112  14678899999999999999874  345555


Q ss_pred             eccCCceEEEecCeEEEeeCCCCChh-hhc---ccccccCCCceeeCCCCCcCC----CCceEEecccCCchhhHHHHHH
Q 016820          283 NLVTGQVSDLKVSGLFFAIGHEPATK-FVD---GQLDLHSDGYIITKPGTTHTS----VPGVFAAGDVQDKKYRQAVTAA  354 (382)
Q Consensus       283 ~~~~~~~~~~~~D~vi~~~G~~p~~~-~~~---~~~~~~~~g~i~vd~~~~~t~----~~~vya~GD~~~~~~~~~~~a~  354 (382)
                      ....++..+++.|.||++||++...+ ++.   ..+.++++|...|++++..-.    .-.||+-|-+... .+.+..-.
T Consensus       318 ~~~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~ht-HGig~pdL  396 (436)
T COG3486         318 HHETGELETVETDAVILATGYRRAVPSFLEGLADRLQWDDDGRLVIGRDYRVLWDGPGKGRIFVQNAELHT-HGIGAPDL  396 (436)
T ss_pred             eccCCCceEEEeeEEEEecccccCCchhhhhHHHhhcccccCCeEecCceeeecCCCCcceEEEecccccc-cccCCccc
Confidence            55567778899999999999995443 555   356778899999998544322    2369999987642 11111122


Q ss_pred             hhHHHHHHHHHHHHHHccC
Q 016820          355 GTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       355 ~~g~~aa~~i~~~l~~~~~  373 (382)
                      .-+.+=+..|.+.|.+..+
T Consensus       397 sl~a~Raa~I~~~L~g~~~  415 (436)
T COG3486         397 SLGAWRAAVILNSLLGREK  415 (436)
T ss_pred             hHHHHHHHHHHHHHhCcCC
Confidence            2222333445566655443

>PTZ00188 adrenodoxin reductase; Provisional

Probab=99.84  E-value=1.2e-18  Score=163.69  Aligned_cols=289  Identities=17%  Similarity=0.148  Sum_probs=184.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHH-HcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAA-RAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .+++|+||||||||+++|.+|. +.|++|+|+|    +...+||.+.+.       -.|++.....+.+.+...+...++
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfE----k~p~pgGLvR~G-------VaPdh~~~k~v~~~f~~~~~~~~v  106 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFE----KLPNPYGLIRYG-------VAPDHIHVKNTYKTFDPVFLSPNY  106 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEe----cCCCCccEEEEe-------CCCCCccHHHHHHHHHHHHhhCCe
Confidence            4578999999999999999765 6699999999    666778877642       112344556777777777777788


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCC----------CCc---------c-----ccCCCcc
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP----------GSD---------A-----FWNRGIS  191 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~----------g~~---------~-----~~~~~~~  191 (382)
                      +++.+.-...+       +..+.-.-.||.||+|+|+.+..++++          |.+         .     .|.+..+
T Consensus       107 ~f~gnv~VG~D-------vt~eeL~~~YDAVIlAtGA~~l~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p  179 (506)
T PTZ00188        107 RFFGNVHVGVD-------LKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMY  179 (506)
T ss_pred             EEEeeeEecCc-------cCHHHHHhcCCEEEEEcCCCCCCCCcccccceeeeccccccccccCcEEehheEEEeecCCC
Confidence            88743211111       111122247999999999986433311          321         1     2333322


Q ss_pred             eee---eccCCCC-CCCCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCcc----
Q 016820          192 ACA---VCDGAAP-IFRDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFRA----  242 (382)
Q Consensus       192 ~~~---~~~~~~~-~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~~----  242 (382)
                      .+.   ....++. ....++++|||+|++|+++|..|...                    + .+|+++.|+.....    
T Consensus       180 ~~~~~~~~~ayL~p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~  259 (506)
T PTZ00188        180 NDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTN  259 (506)
T ss_pred             CccccccccccccccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCH
Confidence            111   1111110 11457899999999999999976422                    1 47899988875500    


Q ss_pred             -----------------hHH--------------------------HHHHhcc----------CCCcEEEcCceeEEEEe
Q 016820          243 -----------------SKI--------------------------MQNRALT----------NPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       243 -----------------~~~--------------------------~~~~~l~----------~~gv~~~~~~~v~~i~~  269 (382)
                                       ...                          ++++..+          .+.+.+++...+.+|.+
T Consensus       260 kElrEL~~l~~~~v~v~~~d~~~~~~~~~~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~  339 (506)
T PTZ00188        260 AELRELISLENTKVILSKKNYDLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRP  339 (506)
T ss_pred             HHHHHHhcCCCCeEEEChhhhcccccccchhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEEC
Confidence                             000                          1111111          13366777788888886


Q ss_pred             cCCceeeeeEEEEec--------cCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecc
Q 016820          270 EGDKKVLGGLKVKNL--------VTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGD  341 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~--------~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD  341 (382)
                      ++ | .++++++...        .+++.+.+++|+|+.++|++...-  . ++.+| .. +......-....|++|++|.
T Consensus       340 ~~-~-~v~~v~~~~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~--~-g~pFd-~~-~~n~~grv~~~~~g~Y~~GW  412 (506)
T PTZ00188        340 ID-G-AMKNVELELNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNF--A-ENLYN-QS-VQMFKEDIGQHKFAIFKAGW  412 (506)
T ss_pred             CC-C-cEeEEEEEEeecccCccCCCCeeEEEEcCEEEEcccccCCCC--C-CCCcc-cc-CCCCCCcccCCCCCcEEeee
Confidence            32 3 3777887732        235557899999999999997542  2 45666 32 33322111113699999999


Q ss_pred             cCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          342 VQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       342 ~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +...+.+.+...+..+..++..|.+++..
T Consensus       413 iKrGP~GvIgtn~~da~~t~~~v~~d~~~  441 (506)
T PTZ00188        413 FDKGPKGNIASQILNSKNSTHLVLNFLQK  441 (506)
T ss_pred             cCcCCCceeccCcccHHHHHHHHHHHHhh
Confidence            99877778888888999999999999865

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=99.82  E-value=5.4e-19  Score=156.46  Aligned_cols=286  Identities=19%  Similarity=0.257  Sum_probs=187.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ..++|+|||+||||+.+|..|.+.  +++|.++|    +...+.|...       |.-.|++...+.+...+.+.+++..
T Consensus        19 ~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~E----k~PvPFGLvR-------yGVAPDHpEvKnvintFt~~aE~~r   87 (468)
T KOG1800|consen   19 STPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFE----KLPVPFGLVR-------YGVAPDHPEVKNVINTFTKTAEHER   87 (468)
T ss_pred             CCceEEEECCCchHHHHHHHHHhcCCCCeeEeee----cCCcccceee-------eccCCCCcchhhHHHHHHHHhhccc
Confidence            345899999999999999999884  69999999    4445555544       3344666677788888888888878


Q ss_pred             cEEEEe-eE-EEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCCCCCcc----------ccCCCcceeeeccCCCC
Q 016820          135 TQIFTE-TV-SKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQFPGSDA----------FWNRGISACAVCDGAAP  201 (382)
Q Consensus       135 i~~~~~-~v-~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~~g~~~----------~~~~~~~~~~~~~~~~~  201 (382)
                      ..++.+ ++ .++..         ..-+-.||.||+|.|+ .++.++|||.+.          -|++.....+..+.   
T Consensus        88 fsf~gNv~vG~dvsl---------~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~---  155 (468)
T KOG1800|consen   88 FSFFGNVKVGRDVSL---------KELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEP---  155 (468)
T ss_pred             eEEEecceecccccH---------HHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCc---
Confidence            877766 33 22221         1223479999999999 578889999873          33343333332222   


Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcC----------------------CEEEEEEeCCCCcch----------------
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYG----------------------SKVYIIHRRDSFRAS----------------  243 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g----------------------~~v~~~~~~~~~~~~----------------  243 (382)
                      .....+++|||.|++++++|..|...-                      ++|+++.|+..+..+                
T Consensus       156 dls~~~vvIvG~GNVAlDvARiLls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~  235 (468)
T KOG1800|consen  156 DLSGRKVVIVGNGNVALDVARILLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGAR  235 (468)
T ss_pred             ccccceEEEEccCchhhhhhhhhhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcc
Confidence            344889999999999999998876421                      478999988866110                


Q ss_pred             ------------------------HHH----HHHhcc--------CCC---cEEEcCceeEEEEecCCceeeeeEEEE--
Q 016820          244 ------------------------KIM----QNRALT--------NPK---IDVIWNSVVLEAYGEGDKKVLGGLKVK--  282 (382)
Q Consensus       244 ------------------------~~~----~~~~l~--------~~g---v~~~~~~~v~~i~~~~~g~~~~~v~~~--  282 (382)
                                              +.+    .+.+-+        ..+   ..+.+.....+|.++.+|  +.++.+.  
T Consensus       236 ~r~~~~~~~~~~~~~~~~~~~RpRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~--v~~~~~~~t  313 (468)
T KOG1800|consen  236 PRLDPVDFSGKWMDESETPQHRPRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG--VSGVRFQVT  313 (468)
T ss_pred             cccCchhccceeCCcccccccCchhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc--ccceEEEee
Confidence                                    001    000000        011   122223334455555443  2223332  


Q ss_pred             ------eccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCc---CCCCceEEecccCCchhhHHHHH
Q 016820          283 ------NLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH---TSVPGVFAAGDVQDKKYRQAVTA  353 (382)
Q Consensus       283 ------~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~---t~~~~vya~GD~~~~~~~~~~~a  353 (382)
                            ...+++.++++|++++.+.|++..+-.  .++.+|....+.-|.+.+.   --.|+||++|.|...+.+.+..+
T Consensus       314 ~l~~~~~~~tg~~e~~p~~l~i~sIGYks~pv~--~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIatt  391 (468)
T KOG1800|consen  314 ILEGTQAVPTGAFETLPCGLLIRSIGYKSVPVD--SGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATT  391 (468)
T ss_pred             eehhhcccccCceEeeccceeEeeeeecccccC--CCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeeh
Confidence                  223456688999999999999864321  1444444333333321111   03699999999998778889999


Q ss_pred             HhhHHHHHHHHHHHHH
Q 016820          354 AGTGCMAALEAEHYLQ  369 (382)
Q Consensus       354 ~~~g~~aa~~i~~~l~  369 (382)
                      +++|..+|..|.+++.
T Consensus       392 m~dAf~v~d~I~qD~~  407 (468)
T KOG1800|consen  392 MQDAFEVADTIVQDLK  407 (468)
T ss_pred             hhhHHHHHHHHHHHHH
Confidence            9999999999999998

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=99.82  E-value=4.3e-18  Score=155.09  Aligned_cols=205  Identities=20%  Similarity=0.227  Sum_probs=135.8

Q ss_pred             EEEcCEEEEccCCCCcCCCCC---CCccccCCCcce---e------------eeccCCCCCCCCCcEEEE---cCCc---
Q 016820          160 SVLADTVIVATGAVAKKLQFP---GSDAFWNRGISA---C------------AVCDGAAPIFRDKPLAVI---GGGD---  215 (382)
Q Consensus       160 ~~~~d~lvlA~G~~~~~~~~~---g~~~~~~~~~~~---~------------~~~~~~~~~~~~~~v~Vv---G~G~---  215 (382)
                      +++...+|+|||-.+....-.   |...+ .+.+..   .            .+....  ...+|+|++|   |+-.   
T Consensus       298 e~~vGaIIvAtGy~~~Da~~k~EyGYG~~-~nVIT~lElErml~~~GPT~GkvlrpSd--g~~pKrVaFIqCVGSRD~~~  374 (622)
T COG1148         298 ELEVGAIIVATGYKPFDATRKEEYGYGKY-PNVITNLELERMLNPNGPTGGKVLRPSD--GKPPKRVAFIQCVGSRDFQV  374 (622)
T ss_pred             EEEeceEEEEccccccCcchhhhcCCCCC-cchhhHHHHHHHhccCCCCCceEEecCC--CCCCceEEEEEEecCcCccc
Confidence            488999999999976554221   11110 000000   0            111111  3457888885   5432   


Q ss_pred             -----h------HHHHHHHHhhc--CCEEEEEEeCCCC-c-chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          216 -----S------AMEEANFLTKY--GSKVYIIHRRDSF-R-ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       216 -----~------a~e~a~~l~~~--g~~v~~~~~~~~~-~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                           +      ++..|.++.++  ..+|++++..-+- . ....+..+..++.||+++.+ ++.+|...++++.+  |+
T Consensus       375 ~n~YCSrvCCm~slKqA~~Ike~~Pd~~v~I~YmDiRafG~~yEefY~~~Q~~~gV~fIRG-rvaei~e~p~~~l~--V~  451 (622)
T COG1148         375 GNPYCSRVCCMVSLKQAQLIKERYPDTDVTIYYMDIRAFGKDYEEFYVRSQEDYGVRFIRG-RVAEIAEFPKKKLI--VR  451 (622)
T ss_pred             CChhhHHHHHHHHHhhhhhhhhcCCCcceeEEEEEeeccCccHHHHHHhhhhhhchhhhcC-ChHHheeCCCCeeE--EE
Confidence                 1      33334444443  2567777654432 2 34455556666889999865 68888888776533  66


Q ss_pred             EEeccCCceEEEecCeEEEeeCCCCChhhhc----ccccccCCCceeeCCCCC---cCCCCceEEecccCCchhhHHHHH
Q 016820          281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVD----GQLDLHSDGYIITKPGTT---HTSVPGVFAAGDVQDKKYRQAVTA  353 (382)
Q Consensus       281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~----~~~~~~~~g~i~vd~~~~---~t~~~~vya~GD~~~~~~~~~~~a  353 (382)
                      .++...+...++++|+|++++|+.|....-.    .+|+.+++||+....-.+   .++.++||.+|-+.+  |+.+..+
T Consensus       452 ~EdTl~g~~~e~~~DLVVLa~Gmep~~g~~kia~iLgL~~~~~gF~k~~hPkl~pv~s~~~GIflAG~aqg--PkdI~~s  529 (622)
T COG1148         452 VEDTLTGEVKEIEADLVVLATGMEPSEGAKKIAKILGLSQDEDGFLKEAHPKLRPVDSNRDGIFLAGAAQG--PKDIADS  529 (622)
T ss_pred             EEeccCccceecccceEEEeeccccCcchHHHHHhcCcccCCCCccccCCCCcccccccCCcEEEeecccC--CccHHHH
Confidence            6676667778899999999999998654322    588999999987753233   457899999999986  6899999


Q ss_pred             HhhHHHHHHHHHHHHHHcc
Q 016820          354 AGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       354 ~~~g~~aa~~i~~~l~~~~  372 (382)
                      +.||..||..+++.+....
T Consensus       530 iaqa~aAA~kA~~~l~~g~  548 (622)
T COG1148         530 IAQAKAAAAKAAQLLGRGE  548 (622)
T ss_pred             HHHhHHHHHHHHHHhhcCc
Confidence            9999999999999887543

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=99.82  E-value=4.3e-20  Score=164.86  Aligned_cols=297  Identities=19%  Similarity=0.175  Sum_probs=191.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCC---CCCCcceecCCCcc--------cCCCCC--CCCChHH
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMAND---IAPGGQLTTTSDVE--------NFPGFP--QGILGGD  121 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~---~~~gg~~~~~~~~~--------~~~~~~--~~~~~~~  121 (382)
                      .....+|||+|.+..+++...+..  +.+|.+|...+...   ......+....+..        .|.+-.  -+...+.
T Consensus       177 ~hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~dpn~~k~lrfkqwsGkeRsiffepd~  256 (659)
T KOG1346|consen  177 KHVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGDPNSAKKLRFKQWSGKERSIFFEPDG  256 (659)
T ss_pred             ccCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCCCChhhheeecccCCccceeEecCCc
Confidence            345689999999998888777665  67788875211110   01111111110000        000000  0011111


Q ss_pred             HHHHHHH--HHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc--c-----cCCCcc
Q 016820          122 LMDRCRN--QSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA--F-----WNRGIS  191 (382)
Q Consensus       122 ~~~~~~~--~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~--~-----~~~~~~  191 (382)
                      +.-.-++  .+..-|+.+..+ .|..|+.+++.+.+. ++.+|.||.++||||.+|+...+.....  .     ..+...
T Consensus       257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~Ln-DG~~I~YdkcLIATG~~Pk~l~~~~~A~~evk~kit~fr~p~  335 (659)
T KOG1346|consen  257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILN-DGTTIGYDKCLIATGVRPKKLQVFEEASEEVKQKITYFRYPA  335 (659)
T ss_pred             ceeChhHCcccccCceEEEeccceEEeecccCeEEec-CCcEeehhheeeecCcCcccchhhhhcCHHhhhheeEEecch
Confidence            1111111  112337889999 799999988876665 6778999999999999998775432221  1     111112


Q ss_pred             eeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc----CCEEEEEEeCCCCc-------chHHHHHHhccCCCcEEEc
Q 016820          192 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY----GSKVYIIHRRDSFR-------ASKIMQNRALTNPKIDVIW  260 (382)
Q Consensus       192 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~----g~~v~~~~~~~~~~-------~~~~~~~~~l~~~gv~~~~  260 (382)
                      +.......  ....++|.|||+|..|.|+++.|.+.    |.+|+.+.......       .+++.. +.+++.||.++.
T Consensus       336 DF~rlek~--~aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm~kiLPeyls~wt~-ekir~~GV~V~p  412 (659)
T KOG1346|consen  336 DFKRLEKG--LAEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNMEKILPEYLSQWTI-EKIRKGGVDVRP  412 (659)
T ss_pred             HHHHHHHh--hhhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCChhhhhHHHHHHHHH-HHHHhcCceecc
Confidence            22222222  23358999999999999999999864    57887766544321       133333 457789999999


Q ss_pred             CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCC-CceeeCCCCCcCCCCceEE
Q 016820          261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSD-GYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       261 ~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~-g~i~vd~~~~~t~~~~vya  338 (382)
                      +..|..+.....+     +.++.   .++.++..|+|+.|+|..||+++.. .++.+|++ |...||. .++ ...|||+
T Consensus       413 na~v~sv~~~~~n-----l~lkL---~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvna-eL~-ar~Nvwv  482 (659)
T KOG1346|consen  413 NAKVESVRKCCKN-----LVLKL---SDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNA-ELK-ARENVWV  482 (659)
T ss_pred             chhhhhhhhhccc-----eEEEe---cCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeh-eee-cccceee
Confidence            9999998887654     66665   4458899999999999999999987 67888764 7888988 343 3589999


Q ss_pred             ecccCCc--------hhhHHHHHHhhHHHHHHHHHHH
Q 016820          339 AGDVQDK--------KYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       339 ~GD~~~~--------~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      +||++..        .......|+-.|++|++||.-.
T Consensus       483 AGdaacF~D~~LGrRRVehhdhavvSGRLAGENMtgA  519 (659)
T KOG1346|consen  483 AGDAACFEDGVLGRRRVEHHDHAVVSGRLAGENMTGA  519 (659)
T ss_pred             ecchhhhhcccccceeccccccceeeceecccccccc
Confidence            9998852        1234456888999999998653

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.80  E-value=1.4e-20  Score=161.99  Aligned_cols=182  Identities=26%  Similarity=0.385  Sum_probs=119.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHH--H--HHHHHHHHcCc
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLM--D--RCRNQSLRFGT  135 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~gi  135 (382)
                      ||+|||||+||+++|.+|++.+.+++|+|+..    ..+..   ..................+.  +  .+.+.+...++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   73 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP----GTPYN---SGCIPSPLLVEIAPHRHEFLPARLFKLVDQLKNRGV   73 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS----HHHHH---HSHHHHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc----ccccc---cccccccccccccccccccccccccccccccccceE
Confidence            69999999999999999999999999998410    00000   00000000000000001111  1  33334466799


Q ss_pred             EEEEe-eEEEEEecCCcE-----EE---EE-CCeEEEcCEEEEccCCCCcCCCCCCCcc-ccCCCcceeeeccCCCCCCC
Q 016820          136 QIFTE-TVSKVDFKSRPF-----KV---FT-DSKSVLADTVIVATGAVAKKLQFPGSDA-FWNRGISACAVCDGAAPIFR  204 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~-----~v---~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~  204 (382)
                      +++.+ ++.+++...+.+     .+   .. ++.++.||+||+|||+.|+.|.+||.+. ...+....+......  ...
T Consensus        74 ~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~~--~~~  151 (201)
T PF07992_consen   74 EIRLNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIPGEEVAYFLRGVDDAQRFLEL--LES  151 (201)
T ss_dssp             EEEHHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESSTTTTTECBTTSEEHHHHHHTH--SST
T ss_pred             EEeeccccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecCCCcccccccccccccccccc--ccc
Confidence            99555 799999887742     22   11 3456999999999999999999999732 333555555555554  333


Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      .++++|||                                                                        
T Consensus       152 ~~~v~VvG------------------------------------------------------------------------  159 (201)
T PF07992_consen  152 PKRVAVVG------------------------------------------------------------------------  159 (201)
T ss_dssp             TSEEEEES------------------------------------------------------------------------
T ss_pred             cccccccc------------------------------------------------------------------------
Confidence            55999999                                                                        


Q ss_pred             cCCceEEEecCeEEEeeCCCCChhhh--cccccccCCCceeeCCCCCcCCCCceEEecccCCc
Q 016820          285 VTGQVSDLKVSGLFFAIGHEPATKFV--DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK  345 (382)
Q Consensus       285 ~~~~~~~~~~D~vi~~~G~~p~~~~~--~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~  345 (382)
                                            ...+  ..++.++++|++.||+ +++|+.||||++|||++.
T Consensus       160 ----------------------~~~l~~~~~~~~~~~g~i~vd~-~~~t~~~~Iya~GD~a~~  199 (201)
T PF07992_consen  160 ----------------------TEFLAEKLGVELDENGFIKVDE-NLQTSVPGIYAAGDCAGI  199 (201)
T ss_dssp             ----------------------TTTSTHHTTSTBTTTSSBEEBT-TSBBSSTTEEE-GGGBEE
T ss_pred             ----------------------cccccccccccccccccccccc-cccccccccccccccccc
Confidence                                  3333  2467788999999999 789999999999999864

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=99.70  E-value=5.6e-17  Score=136.81  Aligned_cols=254  Identities=19%  Similarity=0.178  Sum_probs=143.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH------H
Q 016820           60 KVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS------L  131 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~  131 (382)
                      +.+|||||.||++||.+|+.+  ..+++|+...    ..+       ....         ....+.+|+.++-      .
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitas----s~v-------ksvt---------n~~~i~~ylekfdv~eq~~~   60 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITAS----SFV-------KSVT---------NYQKIGQYLEKFDVKEQNCH   60 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEecc----HHH-------HHHh---------hHHHHHHHHHhcCccccchh
Confidence            368999999999999999998  5788888721    000       0000         1112222222211      1


Q ss_pred             HcCcEEE--EeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCC-Ccc-ccCCCcceeeeccCCCCCCCCCc
Q 016820          132 RFGTQIF--TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPG-SDA-FWNRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       132 ~~gi~~~--~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g-~~~-~~~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      ++|-++.  .+.|..++..+..++.+ ++..+.|++|++|+|.+|..- ..| ... ...+.....+.....  ....|.
T Consensus        61 elg~~f~~~~~~v~~~~s~ehci~t~-~g~~~ky~kKOG~tg~kPklq-~E~~n~~Iv~irDtDsaQllq~k--l~kaK~  136 (334)
T KOG2755|consen   61 ELGPDFRRFLNDVVTWDSSEHCIHTQ-NGEKLKYFKLCLCTGYKPKLQ-VEGINPKIVGIRDTDSAQLLQCK--LVKAKI  136 (334)
T ss_pred             hhcccHHHHHHhhhhhccccceEEec-CCceeeEEEEEEecCCCccee-ecCCCceEEEEecCcHHHHHHHH--Hhhcce
Confidence            1122211  11133344333333332 567799999999999999653 333 222 111222333333333  556899


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhc------------------------------
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRAL------------------------------  251 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l------------------------------  251 (382)
                      |.|+|.|.+++|++.++.-  .+|+|....+.+..      ..+.....+                              
T Consensus       137 VlilgnGgia~El~yElk~--~nv~w~ikd~~IsaTFfdpGaaef~~i~l~a~~s~~~iaiKh~q~iea~pk~~~n~vg~  214 (334)
T KOG2755|consen  137 VLILGNGGIAMELTYELKI--LNVTWKIKDEGISATFFDPGAAEFYDINLRADRSTRIIAIKHFQYIEAFPKCEENNVGP  214 (334)
T ss_pred             EEEEecCchhHHHHHHhhc--ceeEEEecchhhhhcccCccHHHHhHhhhhcccccchhhhhhhhhhhhcCcccccCccc
Confidence            9999999999999999874  46777776665410      011100000                              


Q ss_pred             ----------------c--CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-c
Q 016820          252 ----------------T--NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-G  312 (382)
Q Consensus       252 ----------------~--~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~  312 (382)
                                      +  ++.+++..+.-+....+.+.    ..++-.+...+.-..+.||.+++++|..|+..++- .
T Consensus       215 algpDw~s~~dl~g~~eseer~l~~l~~~~~~~~d~~d~----~sv~~~~~ek~~~~qlt~d~ivSatgvtpn~e~~~~~  290 (334)
T KOG2755|consen  215 ALGPDWHSQIDLQGISESENRSLTYLRNCVITSTDTSDN----LSVHYMDKEKMADNQLTCDFIVSATGVTPNSEWAMNK  290 (334)
T ss_pred             ccCcchhhhcccccchhhhhhhhHHhhhheeeeccchhh----cccccccccccccceeeeeEEEeccccCcCceEEecC
Confidence                            0  00001000111111111111    11222221222224678999999999999999543 3


Q ss_pred             cccccCCCceeeCCCCCcCCCCceEEecccCC
Q 016820          313 QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD  344 (382)
Q Consensus       313 ~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~  344 (382)
                      .++..++|.+.||+ .++|+.|++||+||.+.
T Consensus       291 ~lq~~edggikvdd-~m~tslpdvFa~gDvct  321 (334)
T KOG2755|consen  291 MLQITEDGGIKVDD-AMETSLPDVFAAGDVCT  321 (334)
T ss_pred             hhhhccccCeeehh-hccccccceeeecceec
Confidence            56778899999998 89999999999999875

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.66  E-value=1.2e-14  Score=131.27  Aligned_cols=118  Identities=31%  Similarity=0.391  Sum_probs=89.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC----CCCcceecCCCc------ccCCC--------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI----APGGQLTTTSDV------ENFPG--------------  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~----~~gg~~~~~~~~------~~~~~--------------  112 (382)
                      ..+||+|||||+||++||..+++.|++|+|||+...-+.    .-||.|..+...      .++|+              
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~   81 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTP   81 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCH
Confidence            458999999999999999999999999999995321111    113333332211      12221              


Q ss_pred             ----------------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEE
Q 016820          113 ----------------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIV  168 (382)
Q Consensus       113 ----------------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvl  168 (382)
                                            ||.......+.+.+...+++.|++++.+ +|.+++.++..+.+.++++ ++++|.+|+
T Consensus        82 ~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~lil  161 (408)
T COG2081          82 EDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSLIL  161 (408)
T ss_pred             HHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEEEE
Confidence                                  3333456788899999999999999999 7999999988899998887 699999999


Q ss_pred             ccCCCC
Q 016820          169 ATGAVA  174 (382)
Q Consensus       169 A~G~~~  174 (382)
                      |+|..+
T Consensus       162 AtGG~S  167 (408)
T COG2081         162 ATGGKS  167 (408)
T ss_pred             ecCCcC
Confidence            999643

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=99.62  E-value=1.1e-14  Score=137.27  Aligned_cols=155  Identities=17%  Similarity=0.105  Sum_probs=103.4

Q ss_pred             EEEEcCCchHHHHH-HHHh----hcCCEEEEEEeCCCCcch----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          208 LAVIGGGDSAMEEA-NFLT----KYGSKVYIIHRRDSFRAS----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       208 v~VvG~G~~a~e~a-~~l~----~~g~~v~~~~~~~~~~~~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      =.|++.+.+|+|.+ ..+.    ++|.+|+++...+.....    ..+ .+.+++.|++++.++.+.+++..+++  +..
T Consensus       218 ~~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~~ppslpG~rL~~aL-~~~l~~~Gv~I~~g~~V~~v~~~~~~--V~~  294 (422)
T PRK05329        218 EAVLLPAVLGLDDDAAVLAELEEALGCPVFELPTLPPSVPGLRLQNAL-RRAFERLGGRIMPGDEVLGAEFEGGR--VTA  294 (422)
T ss_pred             CEEEECceecCCChHHHHHHHHHHHCCCEEEeCCCCCCCchHHHHHHH-HHHHHhCCCEEEeCCEEEEEEEeCCE--EEE
Confidence            37788999999998 5554    469999999887766432    333 35577789999999999999877643  222


Q ss_pred             EEEEeccCCceEEEecCeEEEeeCCCCChhhhc---------ccccc--cC-----------------CCceeeCCC---
Q 016820          279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---------GQLDL--HS-----------------DGYIITKPG---  327 (382)
Q Consensus       279 v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---------~~~~~--~~-----------------~g~i~vd~~---  327 (382)
                      +. .  ..+....+.+|.+++|+|..+...+..         -++.+  .+                 .-.+.+|+.   
T Consensus       295 v~-~--~~g~~~~i~AD~VVLAtGrf~s~GL~a~~~~i~Epif~l~v~~~~~r~~w~~~~~~~~~p~~~~GV~~d~~~~p  371 (422)
T PRK05329        295 VW-T--RNHGDIPLRARHFVLATGSFFSGGLVAERDGIREPIFGLDVLQPADRADWYQRDFFAPHPFLQFGVATDATLRP  371 (422)
T ss_pred             EE-e--eCCceEEEECCEEEEeCCCcccCceeccCCccccccCCCCCCCCCchhhhhhhhhccCCchhhcCceECCCcCc
Confidence            22 1  124446799999999999876543311         01111  00                 112455553   


Q ss_pred             ---CCcCCCCceEEecccCCchhh-----HHHHHHhhHHHHHHHHHHHH
Q 016820          328 ---TTHTSVPGVFAAGDVQDKKYR-----QAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       328 ---~~~t~~~~vya~GD~~~~~~~-----~~~~a~~~g~~aa~~i~~~l  368 (382)
                         ..++..+||||||++.+.+..     -...|+..|..||++|++..
T Consensus       372 ~~~~g~~~~~nl~a~G~vl~g~d~~~~~~g~Gva~~ta~~a~~~~~~~~  420 (422)
T PRK05329        372 LDSQGGPVIENLYAAGAVLGGYDPIREGCGSGVALATALHAAEQIAEEA  420 (422)
T ss_pred             ccCCCCeeccceEEeeehhcCCchHHhCCCchhHHHHHHHHHHHHHHhh
Confidence               223458999999999864311     23578899999999998654

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.49  E-value=2.3e-11  Score=112.86  Aligned_cols=174  Identities=22%  Similarity=0.275  Sum_probs=106.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCc------------c-cCCC----------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDV------------E-NFPG----------  112 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~------------~-~~~~----------  112 (382)
                      ++|+|||+|++|+.+|.+|.+.   ...|.|+|+    ....|.-+.+....            . ..|.          
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~----~~~~G~GiaYs~~~p~~~lNv~a~~mS~~~pD~p~~F~~WL~   77 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEP----RPNFGQGIAYSTEEPEHLLNVPAARMSAFAPDIPQDFVRWLQ   77 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEecc----ccccCCCccCCCCCchhhhccccccccccCCCCchHHHHHHH
Confidence            6899999999999999999988   233999995    33333322221111            0 0011          


Q ss_pred             ------------------C-CCCCChHHHHHHHHHHHHHcC---cEEEEeeEEEEEec--CCcEEEEEC-CeEEEcCEEE
Q 016820          113 ------------------F-PQGILGGDLMDRCRNQSLRFG---TQIFTETVSKVDFK--SRPFKVFTD-SKSVLADTVI  167 (382)
Q Consensus       113 ------------------~-~~~~~~~~~~~~~~~~~~~~g---i~~~~~~v~~i~~~--~~~~~v~~~-~~~~~~d~lv  167 (382)
                                        | |..+.++.+.+++..++++..   +.++..+++++..+  ...+.+.+. +....+|-+|
T Consensus        78 ~~~~~~~d~~~~~~d~~~y~pR~lfG~Yl~e~l~~l~~~~~~~~v~~~~~~a~~~~~~~n~~~~~~~~~~g~~~~ad~~V  157 (474)
T COG4529          78 KQLQRYRDPEDINHDGQAYPPRRLFGEYLREQLAALLARGRQTRVRTIREEATSVRQDTNAGGYLVTTADGPSEIADIIV  157 (474)
T ss_pred             hcccccCChhhcCCccccccchhHHHHHHHHHHHHHHHhcCccceeEEeeeeecceeccCCceEEEecCCCCeeeeeEEE
Confidence                              0 112233444444555555444   67777777777766  445555554 4557899999


Q ss_pred             EccCCCCcCCCC-----CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCC
Q 016820          168 VATGAVAKKLQF-----PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSF  240 (382)
Q Consensus       168 lA~G~~~~~~~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~  240 (382)
                      +|||..+-.++.     +|...+. ...+....++.   .....+|+|+|+|.+.++....|.+.|+  +||.+.|+...
T Consensus       158 latgh~~~~~~~~~~~~~~~~~~i-a~~~~~~~ld~---v~~~drVli~GsgLt~~D~v~~l~~~gh~g~It~iSRrGl~  233 (474)
T COG4529         158 LATGHSAPPADPAARDLKGSPRLI-ADPYPANALDG---VDADDRVLIVGSGLTSIDQVLVLRRRGHKGPITAISRRGLV  233 (474)
T ss_pred             EeccCCCCCcchhhhccCCCccee-ccccCCccccc---ccCCCceEEecCCchhHHHHHHHhccCCccceEEEeccccc
Confidence            999985433322     2221111 11111122222   3345679999999999999999999875  58999988743

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=99.39  E-value=7.4e-12  Score=118.81  Aligned_cols=136  Identities=20%  Similarity=0.128  Sum_probs=102.1

Q ss_pred             cceeccccccccccccccccccc--CCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC
Q 016820           20 KARTFFGIVTTSSAAAAASFSAT--TAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP   97 (382)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~   97 (382)
                      .+..++ ++||+++..++.+...  ....++...... ..+.+++|||||+.|+++|..++++|.+|+|+|+.       
T Consensus       135 ~a~~ii-IATGS~p~~~~~~~~~~~~~~~s~~~l~~~-~lP~~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~-------  205 (454)
T COG1249         135 TADNII-IATGSRPRIPPGPGIDGARILDSSDALFLL-ELPKSLVIVGGGYIGLEFASVFAALGSKVTVVERG-------  205 (454)
T ss_pred             EeCEEE-EcCCCCCcCCCCCCCCCCeEEechhhcccc-cCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEecC-------
Confidence            333333 6699998877755544  334444434444 67899999999999999999999999999999941       


Q ss_pred             CcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-e--EEEcCEEEEccCCC
Q 016820           98 GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-K--SVLADTVIVATGAV  173 (382)
Q Consensus        98 gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~--~~~~d~lvlA~G~~  173 (382)
                                    ........+++.+.+.+.+++.+++++.+ .+..++..++.+.+..++ .  ++.+|++++|+|++
T Consensus       206 --------------~~iLp~~D~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~  271 (454)
T COG1249         206 --------------DRILPGEDPEISKELTKQLEKGGVKILLNTKVTAVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRK  271 (454)
T ss_pred             --------------CCCCCcCCHHHHHHHHHHHHhCCeEEEccceEEEEEecCCeEEEEEecCCCCEEEeeEEEEccCCc
Confidence                          11122356899999999999988999999 688887766555555433 2  68899999999999


Q ss_pred             CcCCC
Q 016820          174 AKKLQ  178 (382)
Q Consensus       174 ~~~~~  178 (382)
                      |+...
T Consensus       272 Pn~~~  276 (454)
T COG1249         272 PNTDG  276 (454)
T ss_pred             cCCCC
Confidence            98874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.39  E-value=2.4e-12  Score=121.12  Aligned_cols=112  Identities=31%  Similarity=0.397  Sum_probs=72.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC--------cceecCC---CcccC----CC-----------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG--------GQLTTTS---DVENF----PG-----------  112 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g--------g~~~~~~---~~~~~----~~-----------  112 (382)
                      |||+|||||+||+.||+.|++.|++|+|+|++    ..+|        |++..+.   ....|    +.           
T Consensus         1 ydviIIGgGaAGl~aA~~aa~~g~~V~vlE~~----~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~   76 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAEKGARVLVLERN----KRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKR   76 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHHTT--EEEE-SS----SSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCC----cccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhc
Confidence            69999999999999999999999999999953    3332        3333222   00000    00           


Q ss_pred             -------------------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEE-CCeEEEcC
Q 016820          113 -------------------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFT-DSKSVLAD  164 (382)
Q Consensus       113 -------------------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d  164 (382)
                                               +|......++.+.+...+++.|++++.+ +|.+|..+++. +.+.+ ++..+.+|
T Consensus        77 f~~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~  156 (409)
T PF03486_consen   77 FSPEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEAD  156 (409)
T ss_dssp             S-HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEES
T ss_pred             CCHHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCC
Confidence                                     2223356788888999999999999999 79999987766 88998 78889999


Q ss_pred             EEEEccCCCC
Q 016820          165 TVIVATGAVA  174 (382)
Q Consensus       165 ~lvlA~G~~~  174 (382)
                      .||+|+|..+
T Consensus       157 ~vILAtGG~S  166 (409)
T PF03486_consen  157 AVILATGGKS  166 (409)
T ss_dssp             EEEE----SS
T ss_pred             EEEEecCCCC
Confidence            9999999865

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK09897 hypothetical protein; Provisional

Probab=99.34  E-value=2.1e-10  Score=111.44  Aligned_cols=172  Identities=15%  Similarity=0.219  Sum_probs=103.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCC-C-----ccc---------------C-----
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTS-D-----VEN---------------F-----  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~-~-----~~~---------------~-----  110 (382)
                      ++|+|||||++|+++|..|.+.+  .+|+|+|+.    ..+|..+.+.. .     ..+               |     
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~----~~~G~G~ays~~~~~~~L~~N~~~~~~p~~~~~f~~Wl~~~~   77 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQA----DEAGVGMPYSDEENSKMMLANIASIEIPPIYCTYLEWLQKQE   77 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecC----CCCCcceeecCCCChHHHHhcccccccCCChHHHHHHhhhhh
Confidence            58999999999999999998874  589999963    22231111000 0     000               0     


Q ss_pred             -----------------CCCCCCCChHHHHHHHHHH---HHHcC--cEEEEe-eEEEEEecCCcEEEEECC--eEEEcCE
Q 016820          111 -----------------PGFPQGILGGDLMDRCRNQ---SLRFG--TQIFTE-TVSKVDFKSRPFKVFTDS--KSVLADT  165 (382)
Q Consensus       111 -----------------~~~~~~~~~~~~~~~~~~~---~~~~g--i~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~  165 (382)
                                       ..+|....+..+.+.+...   +...|  +.++.. +|++++..++.+.+.+++  ..+.+|+
T Consensus        78 ~~~~~~~g~~~~~l~~~~f~PR~l~G~YL~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~~V~t~~gg~~i~aD~  157 (534)
T PRK09897         78 DSHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMLATNQDLPSETFDL  157 (534)
T ss_pred             HHHHHhcCCcceeecCCccCCeecchHHHHHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEEEEEECCCCeEEEcCE
Confidence                             0111222333333333333   33445  666666 899999888888887643  5689999


Q ss_pred             EEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcC-----------------
Q 016820          166 VIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG-----------------  228 (382)
Q Consensus       166 lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g-----------------  228 (382)
                      ||+|+|..+..+ .++...+... .+... ...   ...+.+|+|+|.|.++++.+..|...+                 
T Consensus       158 VVLAtGh~~p~~-~~~~~~yi~~-pw~~~-~~~---~i~~~~V~I~GtGLt~iD~v~~Lt~~gG~F~~~~~~~~~l~y~~  231 (534)
T PRK09897        158 AVIATGHVWPDE-EEATRTYFPS-PWSGL-MEA---KVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDN  231 (534)
T ss_pred             EEECCCCCCCCC-ChhhccccCC-CCcch-hhc---CCCCCeEEEECCCHHHHHHHHHHHhcCCceeccCCCcceeeecC
Confidence            999999843111 1222212111 11111 111   223689999999999999998887542                 


Q ss_pred             ----CEEEEEEeCCCC
Q 016820          229 ----SKVYIIHRRDSF  240 (382)
Q Consensus       229 ----~~v~~~~~~~~~  240 (382)
                          .+|+.+.|+..+
T Consensus       232 sg~~~~I~a~SRrGl~  247 (534)
T PRK09897        232 ASEKLNITLMSRTGIL  247 (534)
T ss_pred             CCCCceEEEEeCCCCC
Confidence                368888877764

>TIGR00136 gidA glucose-inhibited division protein A

Probab=99.24  E-value=3.7e-09  Score=102.91  Aligned_cols=120  Identities=24%  Similarity=0.258  Sum_probs=77.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC------CCCCCCcceec--CCCccc---------------C-----
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA------NDIAPGGQLTT--TSDVEN---------------F-----  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~------~~~~~gg~~~~--~~~~~~---------------~-----  110 (382)
                      +||+|||||++|+++|..+++.|.+|+|+|+...      .....||....  ......               |     
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~~c~ps~gG~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~   80 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKCSCNPAIGGPAKGILVKEIDALGGLMGKAADKAGLQFRVLNS   80 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCCCccccccccccchhhhhhhcccchHHHHHHhhceeheeccc
Confidence            5899999999999999999999999999996311      11111211000  000000               0     


Q ss_pred             ---CCC--C-CCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEec-CC-cEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820          111 ---PGF--P-QGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFK-SR-PFKVFTD-SKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       111 ---~~~--~-~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~-~~-~~~v~~~-~~~~~~d~lvlA~G~~~~~~~  178 (382)
                         |..  + ..++...+...+++.+++. ++.++.++++++..+ ++ .+.|.+. +..+.++.||+|||...+-..
T Consensus        81 skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL~g~i  158 (617)
T TIGR00136        81 SKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFLRGKI  158 (617)
T ss_pred             CCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCcccCCCE
Confidence               100  0 1345667777888888777 789988888887544 33 3345554 446999999999999765443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=99.19  E-value=2.7e-10  Score=108.06  Aligned_cols=118  Identities=27%  Similarity=0.315  Sum_probs=82.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------CCCc---ccCC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------TSDV---ENFP  111 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------~~~~---~~~~  111 (382)
                      +||+||||||||+++|+.|++.|++|+|+|+.......+|+.+..                        +...   ...+
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIPDSLIDRRVTQMRMISPSRVPIKVTIP   80 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCchHHHhhhcceeEEEcCCCceeeeccC
Confidence            589999999999999999999999999999752222223332110                        0000   0011


Q ss_pred             C---CCCCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC---------CeEEEcCEEEEccCCCCcC
Q 016820          112 G---FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD---------SKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       112 ~---~~~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~---------~~~~~~d~lvlA~G~~~~~  176 (382)
                      .   +...+....+.+++.+.+.+.|++++.++++++..+++.+.+...         ..++++|.||.|+|.++..
T Consensus        81 ~~~~~~~~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v  157 (388)
T TIGR02023        81 SEDGYVGMVRREVFDSYLRERAQKAGAELIHGLFLKLERDRDGVTLTYRTPKKGAGGEKGSVEADVVIGADGANSPV  157 (388)
T ss_pred             CCCCceEeeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCCeEEEEEEeccccCCCcceEEEeCEEEECCCCCcHH
Confidence            0   101256677888888888889999988888888877777666532         2469999999999987644

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PLN02463 lycopene beta cyclase

Probab=99.19  E-value=6e-10  Score=106.58  Aligned_cols=121  Identities=19%  Similarity=0.135  Sum_probs=84.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee--------------cCCC--------cccCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT--------------TTSD--------VENFPGF  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~--------------~~~~--------~~~~~~~  113 (382)
                      ..+||+|||||+||+++|..|++.|++|.|+|+....... ..+.|.              ....        .......
T Consensus        27 ~~~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~  106 (447)
T PLN02463         27 RVVDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDR  106 (447)
T ss_pred             cCceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccC
Confidence            4589999999999999999999999999999974211110 011100              0000        0000011


Q ss_pred             CC-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCe-EEEcCEEEEccCCCCcCC
Q 016820          114 PQ-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSK-SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       114 ~~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~~~~~~  177 (382)
                      +. .+...++.+.+.+.+.+.|++++..+|++|+.+++.+.+.++++ ++++|.||.|+|..+...
T Consensus       107 ~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s~l~  172 (447)
T PLN02463        107 PYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSRCLV  172 (447)
T ss_pred             cceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCcCcc
Confidence            11 24677888888888888899998778999998877777776554 799999999999976543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.18  E-value=9.8e-10  Score=105.94  Aligned_cols=101  Identities=15%  Similarity=0.117  Sum_probs=81.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+|+|||+|++|+++|..|++.|.+|+++++.    ..             +    .....+++.+.+.+.+++.|++
T Consensus       156 ~~~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~----~~-------------~----l~~~~~~~~~~~~~~l~~~GI~  214 (438)
T PRK07251        156 LPERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAA----ST-------------I----LPREEPSVAALAKQYMEEDGIT  214 (438)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----Cc-------------c----CCCCCHHHHHHHHHHHHHcCCE
Confidence            4578999999999999999999999999999941    00             0    0112356777788888899999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+..++.++.+|.||+|+|.+|+...
T Consensus       215 i~~~~~V~~i~~~~~~v~v~~~g~~i~~D~viva~G~~p~~~~  257 (438)
T PRK07251        215 FLLNAHTTEVKNDGDQVLVVTEDETYRFDALLYATGRKPNTEP  257 (438)
T ss_pred             EEcCCEEEEEEecCCEEEEEECCeEEEcCEEEEeeCCCCCccc
Confidence            9988 79999877666767666778999999999999998653

>PRK08275 putative oxidoreductase; Provisional

Probab=99.17  E-value=4.5e-09  Score=104.02  Aligned_cols=51  Identities=25%  Similarity=0.354  Sum_probs=43.2

Q ss_pred             CceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          320 GYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       320 g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      |++.+|. ..+|+.|+|||+|||+.........++..|+.|+.++++++.+.
T Consensus       357 Ggi~~d~-~~~t~i~gl~a~Ge~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~  407 (554)
T PRK08275        357 SGVWVNE-KAETTVPGLYAAGDMASVPHNYMLGAFTYGWFAGENAAEYVAGR  407 (554)
T ss_pred             CcEEECC-CCccCCCCEEECcccCCchhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            6899998 78899999999999975445567789999999999999988654

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.16  E-value=4.2e-10  Score=99.89  Aligned_cols=118  Identities=27%  Similarity=0.340  Sum_probs=79.2

Q ss_pred             cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec-----CC-Cc----------ccCCC--CC-
Q 016820           54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT-----TS-DV----------ENFPG--FP-  114 (382)
Q Consensus        54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~-----~~-~~----------~~~~~--~~-  114 (382)
                      .+...+||+|||||++|+.+|+.|++.|++|+|+|+..    .+|+.+..     .. ..          ..++.  .. 
T Consensus        21 ~~~~~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~----~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~   96 (257)
T PRK04176         21 LDYLEVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL----SFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVED   96 (257)
T ss_pred             HHhccCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC----CCCCccccCccccccccchHHHHHHHHHCCCCceeecC
Confidence            34567899999999999999999999999999999632    22322110     00 00          00000  00 


Q ss_pred             --CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEE-EEE------------CCeEEEcCEEEEccCCCCc
Q 016820          115 --QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFK-VFT------------DSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       115 --~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~-v~~------------~~~~~~~d~lvlA~G~~~~  175 (382)
                        ......++...+.+.+.+.|++++.+ +|.++..+++ .+. +..            +..+++++.||.|||....
T Consensus        97 g~~~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~  174 (257)
T PRK04176         97 GLYVADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE  174 (257)
T ss_pred             cceeccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence              12356788888888899999999988 6888865444 321 111            1246999999999997543

>PRK10015 oxidoreductase; Provisional

Probab=99.16  E-value=3.9e-10  Score=108.01  Aligned_cols=120  Identities=23%  Similarity=0.254  Sum_probs=81.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecCC------C------c---------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTTS------D------V---------------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~~------~------~---------------  107 (382)
                      .++||+||||||||+++|+.|++.|++|+|||+....  ....|+.+....      .      .               
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~~g~k~~~gg~i~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~~   83 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGFAASAPVERKVTREKISFLTEE   83 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCcccccCceeecccHHHHcccccccCCccccccceeEEEEeCC
Confidence            4589999999999999999999999999999964221  112233221100      0      0               


Q ss_pred             ----ccCCC----C----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCC
Q 016820          108 ----ENFPG----F----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       108 ----~~~~~----~----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~  173 (382)
                          ..+..    .    ...+.+..+-+.+.+.+.+.|++++.+ +|+++..+++.+. +.+++.++.+|.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015         84 SAVTLDFHREQPDVPQHASYTVLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN  163 (429)
T ss_pred             CceEeecccCCCCCCCcCceEeehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence                00000    0    011344566677888888899999988 7888877665554 45566679999999999986


Q ss_pred             CcC
Q 016820          174 AKK  176 (382)
Q Consensus       174 ~~~  176 (382)
                      +..
T Consensus       164 s~v  166 (429)
T PRK10015        164 SML  166 (429)
T ss_pred             hhh
Confidence            543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=99.16  E-value=7.3e-10  Score=106.43  Aligned_cols=122  Identities=24%  Similarity=0.316  Sum_probs=82.4

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC------------------------CCc-cc
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT------------------------SDV-EN  109 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~------------------------~~~-~~  109 (382)
                      ...++||+||||||||+++|..|++.|++|+|+|+.......+|+.+...                        ... ..
T Consensus        36 ~~~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~~~~~~~~i~~~~~~~p~~~~v~  115 (450)
T PLN00093         36 SGRKLRVAVIGGGPAGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLPLDIIDRKVTKMKMISPSNVAVD  115 (450)
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCcHHHHHHHhhhheEecCCceEEE
Confidence            34568999999999999999999999999999997543333344432100                        000 00


Q ss_pred             CC----CCCC--CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEec---CCcEEEEE--C--------CeEEEcCEEEEcc
Q 016820          110 FP----GFPQ--GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFK---SRPFKVFT--D--------SKSVLADTVIVAT  170 (382)
Q Consensus       110 ~~----~~~~--~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~---~~~~~v~~--~--------~~~~~~d~lvlA~  170 (382)
                      +.    ..+.  .+.+..+.+.|.+.+.+.|++++.+++.+++.+   ++.+.+..  .        ..++++|.||.|+
T Consensus       116 ~~~~~~~~~~~~~v~R~~~d~~L~~~A~~~Ga~~~~~~v~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~v~a~~VIgAD  195 (450)
T PLN00093        116 IGKTLKPHEYIGMVRREVLDSFLRERAQSNGATLINGLFTRIDVPKDPNGPYVIHYTSYDSGSGAGTPKTLEVDAVIGAD  195 (450)
T ss_pred             ecccCCCCCeEEEecHHHHHHHHHHHHHHCCCEEEeceEEEEEeccCCCCcEEEEEEeccccccCCCccEEEeCEEEEcC
Confidence            00    0001  146677888898889999999988887777642   23344432  1        2469999999999


Q ss_pred             CCCCcC
Q 016820          171 GAVAKK  176 (382)
Q Consensus       171 G~~~~~  176 (382)
                      |..+..
T Consensus       196 G~~S~v  201 (450)
T PLN00093        196 GANSRV  201 (450)
T ss_pred             CcchHH
Confidence            987644

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.15  E-value=4.1e-10  Score=106.96  Aligned_cols=120  Identities=24%  Similarity=0.276  Sum_probs=83.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC--CCCcceecCCCcc-------------------cCCC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI--APGGQLTTTSDVE-------------------NFPG---  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~--~~gg~~~~~~~~~-------------------~~~~---  112 (382)
                      .++||+||||||||++||+.|++.|++|+|+|+...-+.  ..++.+. .....                   .++.   
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~-~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~   80 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLS-PRALEELIPDFDEEIERKVTGARIYFPGEKV   80 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceec-hhhHHHhCCCcchhhheeeeeeEEEecCCce
Confidence            468999999999999999999999999999996322221  2212111 10000                   0010   


Q ss_pred             -------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcCC
Q 016820          113 -------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       113 -------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~~  177 (382)
                             .-..+....+-++|.+.+.+.|.+++.+ ++..+..+++.+.+..  ++.+++++++|.|+|..+...
T Consensus        81 ~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s~l~  155 (396)
T COG0644          81 AIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNSALA  155 (396)
T ss_pred             EEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcchHHH
Confidence                   0011346778888999999999999998 6888888776655443  335799999999999876443

>PRK06847 hypothetical protein; Provisional

Probab=99.14  E-value=1.2e-09  Score=103.32  Aligned_cols=119  Identities=24%  Similarity=0.253  Sum_probs=84.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-------------------------------cCC-
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-------------------------------TTS-  105 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-------------------------------~~~-  105 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|+....... |..+.                               ... 
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g   82 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVY-GAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDG   82 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccC-CceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCC
Confidence            579999999999999999999999999999974321111 11000                               000 


Q ss_pred             C-cccCC-------CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCC
Q 016820          106 D-VENFP-------GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAV  173 (382)
Q Consensus       106 ~-~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~  173 (382)
                      . ...++       .++  ..+...++.+.+.+.+.+.|++++.+ ++++++.+++.+.+.. ++.++.+|.||.|+|.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vI~AdG~~  162 (375)
T PRK06847         83 TLLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDGVTVTFSDGTTGRYDLVVGADGLY  162 (375)
T ss_pred             CEEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEEEEEEcCCCEEEcCEEEECcCCC
Confidence            0 00000       011  23456788889999888889999998 7999987777777665 45569999999999997


Q ss_pred             CcCC
Q 016820          174 AKKL  177 (382)
Q Consensus       174 ~~~~  177 (382)
                      +...
T Consensus       163 s~~r  166 (375)
T PRK06847        163 SKVR  166 (375)
T ss_pred             cchh
Confidence            7553

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.14  E-value=4.5e-10  Score=102.34  Aligned_cols=118  Identities=24%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee------------------------cC-CCcccCCC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT------------------------TT-SDVENFPG  112 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~------------------------~~-~~~~~~~~  112 (382)
                      +||+|||||++|+++|+.|++.|.+|+|+|+....... .+..+.                        .. ......+.
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPI   80 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEecc
Confidence            58999999999999999999999999999974321111 111000                        00 00000000


Q ss_pred             ---CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcC
Q 016820          113 ---FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       113 ---~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~  176 (382)
                         ....+...++.+.+.+.+.+.|++++.+ +++++..+++.+.+..  ++.++++|+||+|+|.....
T Consensus        81 ~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s~~  150 (295)
T TIGR02032        81 ETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRSIV  150 (295)
T ss_pred             CCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcchHH
Confidence               0012456788888999899999999888 7888877776655433  34579999999999987543

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=99.11  E-value=1.8e-09  Score=104.55  Aligned_cols=101  Identities=22%  Similarity=0.219  Sum_probs=79.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||||++|+++|..|.+.|.+|+|+++.    .    .+        ++     ....++.+.+.+.+++.|++
T Consensus       169 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~----~----~l--------l~-----~~d~e~~~~l~~~L~~~GI~  227 (458)
T PRK06912        169 IPSSLLIVGGGVIGCEFASIYSRLGTKVTIVEMA----P----QL--------LP-----GEDEDIAHILREKLENDGVK  227 (458)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C----Cc--------Cc-----cccHHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999941    0    00        11     12467788888888899999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++..++.+++.+.+..++  .++.+|.||+|+|.+|+...
T Consensus       228 i~~~~~V~~i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~~~~  272 (458)
T PRK06912        228 IFTGAALKGLNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPRVQQ  272 (458)
T ss_pred             EEECCEEEEEEEcCCEEEEEECCceEEEEeCEEEEecCCccCCCC
Confidence            9998 688998776656665444  35999999999999998653

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.10  E-value=1.3e-09  Score=104.46  Aligned_cols=120  Identities=24%  Similarity=0.251  Sum_probs=82.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecCC------------Ccc--------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTTS------------DVE--------------  108 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~~------------~~~--------------  108 (382)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+....  ....|+.+....            ...              
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~~g~k~~~gg~l~~~~~e~l~~~~~~~~~~~~~~~~~~~~~~~~~   83 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEK   83 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCCCCCcccccceechhhHHHHhhhhhhcCcccceeeeeeEEEEcCC
Confidence            3589999999999999999999999999999964211  112233221000            000              


Q ss_pred             -----cCC--------CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEECCeEEEcCEEEEccCCC
Q 016820          109 -----NFP--------GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       109 -----~~~--------~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lvlA~G~~  173 (382)
                           .++        .....+...++.+.+.+.+.+.|++++.+ +|+++..+++.+ .+.+++.++.++.||+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~  163 (428)
T PRK10157         84 SAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN  163 (428)
T ss_pred             CceeeccccccccCCCCCceeeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence                 000        00012345677778888888999999988 788887666554 345566789999999999986


Q ss_pred             CcC
Q 016820          174 AKK  176 (382)
Q Consensus       174 ~~~  176 (382)
                      +..
T Consensus       164 s~l  166 (428)
T PRK10157        164 SIL  166 (428)
T ss_pred             HHH
Confidence            543

>PRK14694 putative mercuric reductase; Provisional

Probab=99.10  E-value=1.9e-09  Score=104.74  Aligned_cols=129  Identities=19%  Similarity=0.227  Sum_probs=92.6

Q ss_pred             ccccccccccccccccC-C-CCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           27 IVTTSSAAAAASFSATT-A-PKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++||+.+..++...... . ..+.... .....+.+++|||+|+.|+++|..|++.|.+|+++++.         .    
T Consensus       146 iATGs~p~~p~i~G~~~~~~~~~~~~~-~l~~~~~~vvViG~G~~G~E~A~~l~~~g~~Vtlv~~~---------~----  211 (468)
T PRK14694        146 IGTGARPAEPPVPGLAETPYLTSTSAL-ELDHIPERLLVIGASVVALELAQAFARLGSRVTVLARS---------R----  211 (468)
T ss_pred             EeCCCCCCCCCCCCCCCCceEcchhhh-chhcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEECC---------C----
Confidence            66888765554333221 1 1111111 11223579999999999999999999999999999830         0    


Q ss_pred             CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                          .++     ...+++.+.+++.+++.|++++.+ ++..++.+++.+.+.++++++.+|.||+|+|.+|+...
T Consensus       212 ----~l~-----~~~~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~  277 (468)
T PRK14694        212 ----VLS-----QEDPAVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAGTLRAEQLLVATGRTPNTEN  277 (468)
T ss_pred             ----CCC-----CCCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCCEEEeCEEEEccCCCCCcCC
Confidence                011     134577888888889999999998 78899877766666666678999999999999998753

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=99.09  E-value=3.5e-09  Score=103.01  Aligned_cols=101  Identities=19%  Similarity=0.240  Sum_probs=76.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||||++|+++|..|++.|.+|+|+|+..    .    +        ++     ....++.+.+.+.+++.|++
T Consensus       179 ~~~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~----~----i--------l~-----~~~~~~~~~l~~~l~~~gI~  237 (472)
T PRK05976        179 LPKSLVIVGGGVIGLEWASMLADFGVEVTVVEAAD----R----I--------LP-----TEDAELSKEVARLLKKLGVR  237 (472)
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEecC----c----c--------CC-----cCCHHHHHHHHHHHHhcCCE
Confidence            45799999999999999999999999999999410    0    0        11     12456778888888899999


Q ss_pred             EEEe-eEEEEEe--cCCcEEEEE-CC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDF--KSRPFKVFT-DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~--~~~~~~v~~-~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++..++.  +++...+.+ ++  .++.+|.||+|+|.+|+...
T Consensus       238 i~~~~~v~~i~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~  285 (472)
T PRK05976        238 VVTGAKVLGLTLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPNTEG  285 (472)
T ss_pred             EEeCcEEEEEEEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccCCCC
Confidence            9999 6888875  333222322 33  35999999999999998754

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.09  E-value=1.9e-09  Score=95.47  Aligned_cols=121  Identities=24%  Similarity=0.297  Sum_probs=78.3

Q ss_pred             cccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecCC-------Cc---ccCCCCC--C---C
Q 016820           54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTTS-------DV---ENFPGFP--Q---G  116 (382)
Q Consensus        54 ~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~~-------~~---~~~~~~~--~---~  116 (382)
                      .+...+||+|||||++|+.+|+.|++.|.+|+|+|+...-+  ...++......       .+   ..++..+  .   .
T Consensus        17 ~~~~~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~   96 (254)
T TIGR00292        17 LDYAESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVV   96 (254)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEE
Confidence            34467999999999999999999999999999999642111  11111111000       00   0001000  0   1


Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC--cE-EEEE------------CCeEEEcCEEEEccCCCC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR--PF-KVFT------------DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~--~~-~v~~------------~~~~~~~d~lvlA~G~~~  174 (382)
                      ....++.+.+.+.+.+.|++++.+ ++.++..+++  .+ -+..            +...++++.||.|||...
T Consensus        97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a  170 (254)
T TIGR00292        97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDA  170 (254)
T ss_pred             eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCc
Confidence            245678888888889999999888 6888876554  22 1221            124689999999999764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.08  E-value=5.5e-09  Score=103.27  Aligned_cols=52  Identities=23%  Similarity=0.282  Sum_probs=41.1

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      .|.+.+|. ..+|..||+||+|++++..       -.....|+..|+.|++++++++.+.
T Consensus       348 ~GGi~vd~-~~~t~IpGLyAaGE~~gg~hG~~rlgG~sl~~a~v~Gr~Ag~~aa~~~~~~  406 (543)
T PRK06263        348 MGGIRINE-DCETNIPGLFACGEVAGGVHGANRLGGNALADTQVFGAIAGKSAAKNAENN  406 (543)
T ss_pred             cCCEEECC-CCcccCCCeEeccccccCCCCCCccchhhhhhhHHHHHHHHHHHHHHhhhc
Confidence            58899998 6679999999999986421       1235578999999999999987643

>PRK06834 hypothetical protein; Provisional

Probab=99.08  E-value=2.3e-09  Score=104.32  Aligned_cols=124  Identities=18%  Similarity=0.229  Sum_probs=84.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCCCccee----------------c-------CC------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAPGGQLT----------------T-------TS------  105 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~gg~~~----------------~-------~~------  105 (382)
                      .+||+||||||+|+++|..|++.|++|+|||+.....   ...++...                .       ..      
T Consensus         3 ~~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~   82 (488)
T PRK06834          3 EHAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRL   82 (488)
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEec
Confidence            5799999999999999999999999999999753211   11111000                0       00      


Q ss_pred             CcccCCC---CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCCCC
Q 016820          106 DVENFPG---FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       106 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      +...++.   +...+....+.+.+.+.+++.|++++.+ +++++..+++.+.+... +.++++|+||.|.|.++......
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~v~~~~g~~i~a~~vVgADG~~S~vR~~l  162 (488)
T PRK06834         83 DISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTGVDVELSDGRTLRAQYLVGCDGGRSLVRKAA  162 (488)
T ss_pred             ccccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEEEecCCCCCcHhhc
Confidence            0000000   0111234566777778888889999988 79999888877777654 34799999999999988655433


Q ss_pred             C
Q 016820          181 G  181 (382)
Q Consensus       181 g  181 (382)
                      |
T Consensus       163 g  163 (488)
T PRK06834        163 G  163 (488)
T ss_pred             C
Confidence            3

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=99.08  E-value=3e-08  Score=92.91  Aligned_cols=111  Identities=18%  Similarity=0.139  Sum_probs=70.0

Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---------ccccc--
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---------GQLDL--  316 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---------~~~~~--  316 (382)
                      .+.+++.|++++.+..+.++..+++.  +..+....   +....+.+|.+|+|+|.--...+..         -++.+  
T Consensus       270 ~~~~~~~Gg~il~g~~V~~i~~~~~~--v~~V~t~~---g~~~~l~AD~vVLAaGaw~S~gL~a~l~~i~Epif~L~v~~  344 (419)
T TIGR03378       270 KHRFEQLGGVMLPGDRVLRAEFEGNR--VTRIHTRN---HRDIPLRADHFVLASGSFFSNGLVAEFDKIYEPIFGLDVLQ  344 (419)
T ss_pred             HHHHHHCCCEEEECcEEEEEEeeCCe--EEEEEecC---CccceEECCEEEEccCCCcCHHHHhhcCceeeeccCCCcCC
Confidence            35567889999999999998876653  33333222   2224799999999999872222111         11211  


Q ss_pred             --cC---------------CCceeeCCCCCcC-----CCCceEEecccCCch--h--h-HHHHHHhhHHHHHHHH
Q 016820          317 --HS---------------DGYIITKPGTTHT-----SVPGVFAAGDVQDKK--Y--R-QAVTAAGTGCMAALEA  364 (382)
Q Consensus       317 --~~---------------~g~i~vd~~~~~t-----~~~~vya~GD~~~~~--~--~-~~~~a~~~g~~aa~~i  364 (382)
                        +.               .-.+.+|+. +++     ..+|+|++|.+.+.+  .  + ....|+..|..||++|
T Consensus       345 ~~~r~~W~~~~ff~~~p~~~~GV~~d~~-lrp~~~g~~~~Nl~a~G~vL~G~d~~~~gcG~GVai~Ta~~aa~~i  418 (419)
T TIGR03378       345 LPDRDQWYQHRFFAPHPFMQFGVKTDAQ-LRPSRGGQTIENLYAIGAVLGGYDPIFEGCGSGVAVSTALHAAEQI  418 (419)
T ss_pred             CcchhhhcchhhcCCChhhhcCceEccc-cCccCCCcccccceEechhhcCCChHhcCCCchhHHHHHHHHHHhh
Confidence              00               123667774 442     389999999988643  1  1 2347888888888876

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.07  E-value=8.8e-10  Score=79.47  Aligned_cols=74  Identities=27%  Similarity=0.397  Sum_probs=62.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      +++|||+|.+|+|+|..|.+.+++|+++++.+.+..     ......+.+++.||++++++.+.+++.++++  ++ |++
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~--~~-V~~   77 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDG--VE-VTL   77 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTS--EE-EEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCE--EE-EEE
Confidence            589999999999999999999999999999998851     1223346788889999999999999999986  44 666


Q ss_pred             Ee
Q 016820          282 KN  283 (382)
Q Consensus       282 ~~  283 (382)
                      ++
T Consensus        78 ~~   79 (80)
T PF00070_consen   78 ED   79 (80)
T ss_dssp             ET
T ss_pred             ec
Confidence            54

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.07  E-value=1.4e-09  Score=103.43  Aligned_cols=123  Identities=19%  Similarity=0.199  Sum_probs=83.4

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC-Cc--c---ee--------------c-----CCCc---
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP-GG--Q---LT--------------T-----TSDV---  107 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~-gg--~---~~--------------~-----~~~~---  107 (382)
                      ...+||+|||||++|+++|+.|++.|++|+|||+........ +.  .   +.              .     ....   
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALADAGLSVALVEGREPPRWQADQPDLRVYAFAADNAALLDRLGVWPAVRAARAQPYRRM   83 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCCCcccccCCCCCEEEEecHHHHHHHHHCCchhhhhHhhCCcccEE
Confidence            346899999999999999999999999999999743211110 10  0   00              0     0000   


Q ss_pred             ----------ccCCC--C-----CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEE
Q 016820          108 ----------ENFPG--F-----PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIV  168 (382)
Q Consensus       108 ----------~~~~~--~-----~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvl  168 (382)
                                ..+..  .     ...+...++.+.+.+.+.+.|++++.+ +|+++..+++.+.+..+ +.++.+|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~  163 (392)
T PRK08773         84 RVWDAGGGGELGFDADTLGREQLGWIVENDLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLEAALAIA  163 (392)
T ss_pred             EEEeCCCCceEEechhccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEEeCEEEE
Confidence                      00000  0     001234667778888888889999888 79999887777777664 45799999999


Q ss_pred             ccCCCCcCCC
Q 016820          169 ATGAVAKKLQ  178 (382)
Q Consensus       169 A~G~~~~~~~  178 (382)
                      |+|.++....
T Consensus       164 AdG~~S~vr~  173 (392)
T PRK08773        164 ADGAASTLRE  173 (392)
T ss_pred             ecCCCchHHH
Confidence            9999875443

>PRK14727 putative mercuric reductase; Provisional

Probab=99.06  E-value=3.2e-09  Score=103.42  Aligned_cols=100  Identities=19%  Similarity=0.173  Sum_probs=81.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+|+++.         .+        +     ....+++.+.+++.+++.|++
T Consensus       187 ~~k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~---------~~--------l-----~~~d~~~~~~l~~~L~~~GV~  244 (479)
T PRK14727        187 LPASLTVIGSSVVAAEIAQAYARLGSRVTILARS---------TL--------L-----FREDPLLGETLTACFEKEGIE  244 (479)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEcC---------CC--------C-----CcchHHHHHHHHHHHHhCCCE
Confidence            3578999999999999999999999999999830         00        1     113456778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++..++.+++.+.+.++++++.+|.+|+|+|.+|+...
T Consensus       245 i~~~~~V~~i~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn~~~  287 (479)
T PRK14727        245 VLNNTQASLVEHDDNGFVLTTGHGELRAEKLLISTGRHANTHD  287 (479)
T ss_pred             EEcCcEEEEEEEeCCEEEEEEcCCeEEeCEEEEccCCCCCccC
Confidence            9988 78888876666777766778999999999999998763

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=99.06  E-value=5e-09  Score=101.81  Aligned_cols=100  Identities=18%  Similarity=0.174  Sum_probs=79.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||++|+++|..|++.|.+|+|+|+..    .            .++     ....++.+.+.+.+++.|++
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~----~------------~l~-----~~~~~~~~~~~~~l~~~gi~  227 (461)
T TIGR01350       169 VPESLVIIGGGVIGIEFASIFASLGSKVTVIEMLD----R------------ILP-----GEDAEVSKVVAKALKKKGVK  227 (461)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC----C------------CCC-----CCCHHHHHHHHHHHHHcCCE
Confidence            45799999999999999999999999999999420    0            011     12356777888888899999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++.+.+... +  .++.+|.||+|+|..|+..
T Consensus       228 i~~~~~v~~i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~~~  272 (461)
T TIGR01350       228 ILTNTKVTAVEKNDDQVVYENKGGETETLTGEKVLVAVGRKPNTE  272 (461)
T ss_pred             EEeCCEEEEEEEeCCEEEEEEeCCcEEEEEeCEEEEecCCcccCC
Confidence            9998 79999877776666543 3  3699999999999999876

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=99.06  E-value=8.9e-09  Score=102.72  Aligned_cols=44  Identities=32%  Similarity=0.403  Sum_probs=37.2

Q ss_pred             CCCCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          326 PGTTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       326 ~~~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      + ..+|+.|||||+|||++. ...+...+..+|+.++.++++++..
T Consensus       389 ~-~~~T~v~glyA~Ge~~~~~~~~l~~~s~~~g~~ag~~~~~~~~~  433 (608)
T PRK06854        389 Y-NRMTTVEGLFAAGDVVGGSPHKFSSGSFAEGRIAAKAAVRYILD  433 (608)
T ss_pred             c-ccccCCCCEEEeeecCCCCcchhHHHHHHHHHHHHHHHHHHHHh
Confidence            6 678999999999999752 3567778889999999999999865

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=99.05  E-value=3.6e-09  Score=105.06  Aligned_cols=52  Identities=21%  Similarity=0.200  Sum_probs=41.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      .|.|.+|. ..+|..|++||+|+|++ ..       ......|+..|+.|++++++++.+.
T Consensus       358 ~GGi~vd~-~~~t~i~GLyAaGe~~~~g~hGanrlggnsl~~a~v~Gr~Ag~~aa~~~~~~  417 (582)
T PRK09231        358 MGGIETDQ-NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRVAGEQAAERAATA  417 (582)
T ss_pred             CCCEEECC-CCccccCCEEecccccccccCCCCCcchhHHHHHHHHHHHHHHHHHHhhhcc
Confidence            58899998 67799999999999864 11       2345678899999999999988643

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=99.05  E-value=3.8e-09  Score=76.13  Aligned_cols=76  Identities=17%  Similarity=0.095  Sum_probs=62.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEE
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT  139 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  139 (382)
                      +++|||||+.|+++|..|+++|.+|+|+++.                     ..+.....+++.+++.+.+++.|++++.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~---------------------~~~~~~~~~~~~~~~~~~l~~~gV~v~~   59 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERS---------------------DRLLPGFDPDAAKILEEYLRKRGVEVHT   59 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESS---------------------SSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEecc---------------------chhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence            5899999999999999999999999999941                     1111234578889999999999999999


Q ss_pred             e-eEEEEEecCCcEEEEE
Q 016820          140 E-TVSKVDFKSRPFKVFT  156 (382)
Q Consensus       140 ~-~v~~i~~~~~~~~v~~  156 (382)
                      + .+.+++.+++.+.+..
T Consensus        60 ~~~v~~i~~~~~~~~V~~   77 (80)
T PF00070_consen   60 NTKVKEIEKDGDGVEVTL   77 (80)
T ss_dssp             SEEEEEEEEETTSEEEEE
T ss_pred             CCEEEEEEEeCCEEEEEE
Confidence            9 6999998887654543

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=99.05  E-value=2.6e-09  Score=101.43  Aligned_cols=115  Identities=19%  Similarity=0.166  Sum_probs=79.4

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcceec-----------CCCccc-----CCC------CCC-
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLTT-----------TSDVEN-----FPG------FPQ-  115 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~~-----------~~~~~~-----~~~------~~~-  115 (382)
                      ||+|||||++|+++|+.|++.|++|+|||+....... ..+.+..           ...+..     ++.      .+. 
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTAYG   80 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCcee
Confidence            7999999999999999999999999999964211100 0000000           000000     010      111 


Q ss_pred             CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEec-CCcEEEEECCe-EEEcCEEEEccCCCC
Q 016820          116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFK-SRPFKVFTDSK-SVLADTVIVATGAVA  174 (382)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~-~~~~~v~~~~~-~~~~d~lvlA~G~~~  174 (382)
                      .+...++.+.+.+.+.+.|++++.+++..+..+ ++.+.+.++++ +++++.||.|+|..+
T Consensus        81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s  141 (388)
T TIGR01790        81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP  141 (388)
T ss_pred             EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence            245678888998888888999987788888776 55666766554 799999999999987

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=99.04  E-value=3.6e-09  Score=100.55  Aligned_cols=120  Identities=23%  Similarity=0.322  Sum_probs=79.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------CCCc-ccC---
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------TSDV-ENF---  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------~~~~-~~~---  110 (382)
                      +||+||||||+|+++|..|++.|++|+|+|+.......+|+.+..                        +... ..+   
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~cg~~i~~~~l~~~g~~~~~~~~~i~~~~~~~p~~~~~~~~~~   80 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKPCGGAIPLCMVDEFALPRDIIDRRVTKMKMISPSNIAVDIGRT   80 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhhHhhccCchhHHHhhhceeEEecCCceEEEeccC
Confidence            489999999999999999999999999999753322333432210                        0000 000   


Q ss_pred             -CC--CCCCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEe---cCCcEEEEE--C--------CeEEEcCEEEEccCCCC
Q 016820          111 -PG--FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDF---KSRPFKVFT--D--------SKSVLADTVIVATGAVA  174 (382)
Q Consensus       111 -~~--~~~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~---~~~~~~v~~--~--------~~~~~~d~lvlA~G~~~  174 (382)
                       +.  +...+....+-+++.+.+.+.|++++.+++.++..   .++.+.+..  .        ..+++++.||.|+|..+
T Consensus        81 ~~~~~~~~~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S  160 (398)
T TIGR02028        81 LKEHEYIGMLRREVLDSFLRRRAADAGATLINGLVTKLSLPADADDPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANS  160 (398)
T ss_pred             CCCCCceeeeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCCCceEEEEEeeccccccCCCccEEEeCEEEECCCcch
Confidence             00  00124567777888888999999998888777643   223344431  1        23699999999999987


Q ss_pred             cCCC
Q 016820          175 KKLQ  178 (382)
Q Consensus       175 ~~~~  178 (382)
                      ....
T Consensus       161 ~v~~  164 (398)
T TIGR02028       161 RVAK  164 (398)
T ss_pred             HHHH
Confidence            6543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.03  E-value=3.5e-09  Score=101.47  Aligned_cols=121  Identities=20%  Similarity=0.198  Sum_probs=78.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcceecC------------------------------C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLTTT------------------------------S  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~~~------------------------------~  105 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|+....... .|..+...                              .
T Consensus        17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   96 (415)
T PRK07364         17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDA   96 (415)
T ss_pred             cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeC
Confidence            4589999999999999999999999999999975322111 12110000                              0


Q ss_pred             C---cccCCC--CCC-----CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC--C--eEEEcCEEEEc
Q 016820          106 D---VENFPG--FPQ-----GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD--S--KSVLADTVIVA  169 (382)
Q Consensus       106 ~---~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~--~--~~~~~d~lvlA  169 (382)
                      .   ...+..  ...     ......+.+.+.+.+.+. +++++.+ ++++++.+++.+.+...  +  .++++|.||.|
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~adlvIgA  176 (415)
T PRK07364         97 DYPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDAATVTLEIEGKQQTLQSKLVVAA  176 (415)
T ss_pred             CCCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeeEEEEccCCcceEEeeeEEEEe
Confidence            0   000110  000     011245666676666665 7998877 78899877777666543  3  35999999999


Q ss_pred             cCCCCcCC
Q 016820          170 TGAVAKKL  177 (382)
Q Consensus       170 ~G~~~~~~  177 (382)
                      .|.++..-
T Consensus       177 DG~~S~vR  184 (415)
T PRK07364        177 DGARSPIR  184 (415)
T ss_pred             CCCCchhH
Confidence            99977543

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.03  E-value=2.9e-09  Score=101.12  Aligned_cols=121  Identities=17%  Similarity=0.149  Sum_probs=81.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc-----c---------eecCC--------Ccc------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG-----Q---------LTTTS--------DVE------  108 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg-----~---------~~~~~--------~~~------  108 (382)
                      +.+||+|||||++|+++|+.|++.|++|+|+|+.........+     .         +....        ...      
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~~r~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~   83 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQSGLRVALLAPRAPPRPADDAWDSRVYAISPSSQAFLERLGVWQALDAARLAPVYDMR   83 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCccccCCCCCCceEeecHHHHHHHHHcCchhhhhhhcCCcceEEE
Confidence            3579999999999999999999999999999974322110000     0         00000        000      


Q ss_pred             ---------cCC----CCC---CCCChHHHHHHHHHHHHHcC-cEEEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEcc
Q 016820          109 ---------NFP----GFP---QGILGGDLMDRCRNQSLRFG-TQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVAT  170 (382)
Q Consensus       109 ---------~~~----~~~---~~~~~~~~~~~~~~~~~~~g-i~~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~  170 (382)
                               .+.    ..|   ..+....+.+.+.+.+.+.+ ++++..+++++..+++.+.+.+++ .++++|+||.|+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~ad  163 (388)
T PRK07608         84 VFGDAHARLHFSAYQAGVPQLAWIVESSLIERALWAALRFQPNLTWFPARAQGLEVDPDAATLTLADGQVLRADLVVGAD  163 (388)
T ss_pred             EEECCCceeEeeccccCCCCCEEEEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCCeEEEEECCCCEEEeeEEEEeC
Confidence                     000    001   11235677788888888887 888844788988777777777644 469999999999


Q ss_pred             CCCCcCC
Q 016820          171 GAVAKKL  177 (382)
Q Consensus       171 G~~~~~~  177 (382)
                      |.++...
T Consensus       164 G~~S~vr  170 (388)
T PRK07608        164 GAHSWVR  170 (388)
T ss_pred             CCCchHH
Confidence            9976544

>TIGR02053 MerA mercuric reductase

Probab=99.03  E-value=5.2e-09  Score=101.64  Aligned_cols=131  Identities=18%  Similarity=0.185  Sum_probs=89.4

Q ss_pred             ccccccccccccccccC--CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           27 IVTTSSAAAAASFSATT--APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      +++|+.+..+.......  ........ .......+++|||+|++|+++|..|+++|.+|+|+++.        ..+   
T Consensus       134 iATGs~p~~p~i~G~~~~~~~~~~~~~-~~~~~~~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~--------~~~---  201 (463)
T TIGR02053       134 IATGARPAIPPIPGLKEAGYLTSEEAL-ALDRIPESLAVIGGGAIGVELAQAFARLGSEVTILQRS--------DRL---  201 (463)
T ss_pred             EcCCCCCCCCCCCCcccCceECchhhh-CcccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC--------CcC---
Confidence            66887765443332221  11111111 11223579999999999999999999999999999941        000   


Q ss_pred             CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCCCC
Q 016820          105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                           ++     ...+++...+++.+++.|++++.+ +|..++.+++.+.+..    ++.++.+|.||+|+|.+|+...+
T Consensus       202 -----l~-----~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~~~~l  271 (463)
T TIGR02053       202 -----LP-----REEPEISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITVEKPGGQGEVEADELLVATGRRPNTDGL  271 (463)
T ss_pred             -----CC-----ccCHHHHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcCCCCC
Confidence                 11     124567788888888999999998 5999987655444433    22569999999999999987643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.03  E-value=2.3e-09  Score=102.33  Aligned_cols=121  Identities=20%  Similarity=0.277  Sum_probs=83.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCC---CCccee---------------------------c---
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIA---PGGQLT---------------------------T---  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~---~gg~~~---------------------------~---  103 (382)
                      +||+|||||++|+++|..|++.|  ++|+|+|+.......   .+..+.                           .   
T Consensus         2 ~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   81 (403)
T PRK07333          2 CDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDS   81 (403)
T ss_pred             CCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeC
Confidence            79999999999999999999995  999999975321111   111000                           0   


Q ss_pred             CC-C-----cccC-----CCCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEE
Q 016820          104 TS-D-----VENF-----PGFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIV  168 (382)
Q Consensus       104 ~~-~-----~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvl  168 (382)
                      .. .     ...+     ...+  ..+...++.+.+.+.+.+.|++++.+ +|++++.+++.+.+.. ++.++.+|.||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vI~  161 (403)
T PRK07333         82 RTSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLEARLLVA  161 (403)
T ss_pred             CCCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEEeCEEEE
Confidence            00 0     0000     0011  12355778888888888889999888 7999988887777765 445699999999


Q ss_pred             ccCCCCcCCCC
Q 016820          169 ATGAVAKKLQF  179 (382)
Q Consensus       169 A~G~~~~~~~~  179 (382)
                      |+|.++.....
T Consensus       162 AdG~~S~vr~~  172 (403)
T PRK07333        162 ADGARSKLREL  172 (403)
T ss_pred             cCCCChHHHHH
Confidence            99998765433

>PRK06370 mercuric reductase; Validated

Probab=99.03  E-value=6.2e-09  Score=101.10  Aligned_cols=129  Identities=17%  Similarity=0.102  Sum_probs=88.6

Q ss_pred             ccccccccccccccccC--CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           27 IVTTSSAAAAASFSATT--APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      +++|+.+..+.......  ...+.... .....+++|+|||+|+.|+++|..|++.|.+|+|+++.    ..+       
T Consensus       139 iATGs~p~~p~i~G~~~~~~~~~~~~~-~~~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~----~~~-------  206 (463)
T PRK06370        139 INTGARAAIPPIPGLDEVGYLTNETIF-SLDELPEHLVIIGGGYIGLEFAQMFRRFGSEVTVIERG----PRL-------  206 (463)
T ss_pred             EcCCCCCCCCCCCCCCcCceEcchHhh-CccccCCEEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----CCC-------
Confidence            66887766554332221  11111111 11234579999999999999999999999999999941    000       


Q ss_pred             CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCC
Q 016820          105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~  177 (382)
                           +     .....++.+.+.+.+++.|++++.+ ++.+++.+++.+.+..    ++.++.+|.||+|+|.+|+..
T Consensus       207 -----l-----~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn~~  274 (463)
T PRK06370        207 -----L-----PREDEDVAAAVREILEREGIDVRLNAECIRVERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPNTD  274 (463)
T ss_pred             -----C-----cccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcCCC
Confidence                 0     1123567778888888999999988 7999987655443332    234699999999999999875

>PLN02697 lycopene epsilon cyclase

Probab=99.03  E-value=5.7e-09  Score=101.54  Aligned_cols=117  Identities=18%  Similarity=0.198  Sum_probs=80.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC--------------CC-cccC-------CCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT--------------SD-VENF-------PGFP  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~--------------~~-~~~~-------~~~~  114 (382)
                      ..+||+|||||+||+++|..|++.|++|+|||+....... .|.|...              .. ...+       ...+
T Consensus       107 ~~~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n-~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~  185 (529)
T PLN02697        107 GTLDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNN-YGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRA  185 (529)
T ss_pred             CcccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCc-cccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCc
Confidence            3589999999999999999999999999999963111111 1111100              00 0000       0111


Q ss_pred             C-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEE--EECCeEEEcCEEEEccCCCC
Q 016820          115 Q-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKV--FTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v--~~~~~~~~~d~lvlA~G~~~  174 (382)
                      . .+....+.+.+.+.+.+.|++++..+|+.+..+++.+.+  ..++.++.++.||.|+|..+
T Consensus       186 Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        186 YGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             ccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            1 256778888898888888999977789999876665432  33567799999999999976

>PRK08071 L-aspartate oxidase; Provisional

Probab=99.03  E-value=3.9e-09  Score=103.31  Aligned_cols=32  Identities=38%  Similarity=0.345  Sum_probs=29.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ++||||||+|.||+.||.++++ |.+|+|+||.
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~-g~~V~lveK~   34 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH-EYNVIIITKK   34 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc-CCCEEEEecc
Confidence            5799999999999999999976 9999999973

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.03  E-value=4.5e-09  Score=109.51  Aligned_cols=51  Identities=27%  Similarity=0.303  Sum_probs=44.5

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|+|.||. ..+|+.||+||+|||++....+...+...|+.++.++++++.+
T Consensus       361 ~GGi~vd~-~~~T~v~GLfAaGE~a~~~~nsl~~a~v~G~~Ag~~a~~~~~~  411 (897)
T PRK13800        361 ASGVWVDE-HARTTVPGLYAAGDLACVPHNYMIGAFVFGDLAGAHAAGTLAE  411 (897)
T ss_pred             cceEEecC-CCcccCCCeEechhccCcchhhhhhHHHhHHHHHHHHHHHHhc
Confidence            48999998 7889999999999998755677888999999999999988754

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.02  E-value=1.7e-09  Score=101.03  Aligned_cols=120  Identities=23%  Similarity=0.224  Sum_probs=78.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee------------------------------cCCC-
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT------------------------------TTSD-  106 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~------------------------------~~~~-  106 (382)
                      ++||+|||||++|+++|..|+++|++|+|||+.........+...                              .... 
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~   80 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGI   80 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEET
T ss_pred             CceEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeeccc
Confidence            379999999999999999999999999999975433222222100                              0000 


Q ss_pred             ------------cccC-----CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--C--C--eEEE
Q 016820          107 ------------VENF-----PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--D--S--KSVL  162 (382)
Q Consensus       107 ------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~--~--~~~~  162 (382)
                                  ...+     ......+...++.+.|.+.+++.++++..+ ++.++..+.+.+.+..  .  +  .+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~  160 (356)
T PF01494_consen   81 SDSRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIE  160 (356)
T ss_dssp             TTSEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEE
T ss_pred             CCccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEE
Confidence                        0000     001112346788899999999999999998 6888887776654332  2  2  2589


Q ss_pred             cCEEEEccCCCCcCC
Q 016820          163 ADTVIVATGAVAKKL  177 (382)
Q Consensus       163 ~d~lvlA~G~~~~~~  177 (382)
                      +|.||.|.|.++..-
T Consensus       161 adlvVgADG~~S~vR  175 (356)
T PF01494_consen  161 ADLVVGADGAHSKVR  175 (356)
T ss_dssp             ESEEEE-SGTT-HHH
T ss_pred             EeeeecccCcccchh
Confidence            999999999987544

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=99.02  E-value=3.4e-09  Score=100.77  Aligned_cols=120  Identities=13%  Similarity=0.113  Sum_probs=80.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc----c-----------------eecC-----C-----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG----Q-----------------LTTT-----S-----  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg----~-----------------~~~~-----~-----  105 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+........++    +                 +...     .     
T Consensus         4 ~~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~~~~~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~   83 (391)
T PRK08020          4 QPTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAAPAPFDADSQPDVRISAISAASVALLKGLGVWDAVQAMRSHPYRRL   83 (391)
T ss_pred             ccccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCCCCcccccCCCCceEEeccHHHHHHHHHcCChhhhhhhhCcccceE
Confidence            4589999999999999999999999999999974311100000    0                 0000     0     


Q ss_pred             ------Cc-c-------cCCCCCCCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEE
Q 016820          106 ------DV-E-------NFPGFPQGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIV  168 (382)
Q Consensus       106 ------~~-~-------~~~~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvl  168 (382)
                            .. .       ..+.....+....+.+.+.+.+.+. +++++.+ +++++..+++.+.+..+ +.++++|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~  163 (391)
T PRK08020         84 ETWEWETAHVVFDAAELKLPELGYMVENRVLQLALWQALEAHPNVTLRCPASLQALQRDDDGWELTLADGEEIQAKLVIG  163 (391)
T ss_pred             EEEeCCCCeEEecccccCCCccEEEEEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCeEEEEECCCCEEEeCEEEE
Confidence                  00 0       0000001134456777777777766 8999877 78888877777777654 44799999999


Q ss_pred             ccCCCCcC
Q 016820          169 ATGAVAKK  176 (382)
Q Consensus       169 A~G~~~~~  176 (382)
                      |.|.++..
T Consensus       164 AdG~~S~v  171 (391)
T PRK08020        164 ADGANSQV  171 (391)
T ss_pred             eCCCCchh
Confidence            99998754

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=99.02  E-value=1.3e-08  Score=91.40  Aligned_cols=137  Identities=15%  Similarity=0.201  Sum_probs=98.5

Q ss_pred             ccceeccccccccccccccccccc--CCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC
Q 016820           19 TKARTFFGIVTTSSAAAAASFSAT--TAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA   96 (382)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~   96 (382)
                      ..+..++ ++||+.....+.+..+  ...+++....+ ...+++++|||+|..||+++.-..++|.+|+++|    ....
T Consensus       172 i~aKnIi-iATGSeV~~~PGI~IDekkIVSStgALsL-~~vPk~~~viG~G~IGLE~gsV~~rLGseVT~VE----f~~~  245 (506)
T KOG1335|consen  172 IKAKNII-IATGSEVTPFPGITIDEKKIVSSTGALSL-KEVPKKLTVIGAGYIGLEMGSVWSRLGSEVTVVE----FLDQ  245 (506)
T ss_pred             EeeeeEE-EEeCCccCCCCCeEecCceEEecCCccch-hhCcceEEEEcCceeeeehhhHHHhcCCeEEEEE----ehhh
Confidence            3444444 5577744433333322  34444444333 4477899999999999999999999999999999    2222


Q ss_pred             CCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEE------CCeEEEcCEEEE
Q 016820           97 PGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFT------DSKSVLADTVIV  168 (382)
Q Consensus        97 ~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~------~~~~~~~d~lvl  168 (382)
                      ++                 .....|+.+.+++.+.+.|++|..+ +|..++...+ .+.++.      +..++++|.+++
T Consensus       246 i~-----------------~~mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~dg~v~i~ve~ak~~k~~tle~DvlLV  308 (506)
T KOG1335|consen  246 IG-----------------GVMDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGDGPVEIEVENAKTGKKETLECDVLLV  308 (506)
T ss_pred             hc-----------------cccCHHHHHHHHHHHHhcCceeEeccEEEEeeccCCCceEEEEEecCCCceeEEEeeEEEE
Confidence            22                 2245789999999999999999999 6999988876 555543      224599999999


Q ss_pred             ccCCCCcCCC
Q 016820          169 ATGAVAKKLQ  178 (382)
Q Consensus       169 A~G~~~~~~~  178 (382)
                      ++|++|....
T Consensus       309 siGRrP~t~G  318 (506)
T KOG1335|consen  309 SIGRRPFTEG  318 (506)
T ss_pred             EccCcccccC
Confidence            9999997653

>PRK08013 oxidoreductase; Provisional

Probab=99.02  E-value=3e-09  Score=101.37  Aligned_cols=120  Identities=16%  Similarity=0.162  Sum_probs=80.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc----c-----------------eec-----CCC---c-
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG----Q-----------------LTT-----TSD---V-  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg----~-----------------~~~-----~~~---~-  107 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|+........|.    +                 +..     ...   . 
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~~~~~~~~~~~~~~~~   82 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVWQDILARRASCYHGME   82 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCchhhhhhcCccccEEE
Confidence            479999999999999999999999999999975321111110    0                 000     000   0 


Q ss_pred             -------c--cCC----CCCC---CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEE
Q 016820          108 -------E--NFP----GFPQ---GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIV  168 (382)
Q Consensus       108 -------~--~~~----~~~~---~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvl  168 (382)
                             .  .+.    +.+.   .+...++.+.+.+.+.+. +++++.+ ++.+++.+++.+.+.. ++.++++|+||-
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~a~lvVg  162 (400)
T PRK08013         83 VWDKDSFGRIAFDDQSMGYSHLGHIIENSVIHYALWQKAQQSSDITLLAPAELQQVAWGENEAFLTLKDGSMLTARLVVG  162 (400)
T ss_pred             EEeCCCCceEEEcccccCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCeEEEEEcCCCEEEeeEEEE
Confidence                   0  000    0110   133456677777777765 7999888 7999987777776654 456799999999


Q ss_pred             ccCCCCcCC
Q 016820          169 ATGAVAKKL  177 (382)
Q Consensus       169 A~G~~~~~~  177 (382)
                      |.|.++..-
T Consensus       163 ADG~~S~vR  171 (400)
T PRK08013        163 ADGANSWLR  171 (400)
T ss_pred             eCCCCcHHH
Confidence            999987554

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=99.01  E-value=6.7e-09  Score=100.24  Aligned_cols=101  Identities=18%  Similarity=0.250  Sum_probs=81.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+|+++.        ..+        .+     ....++.+.+.+.+++.|++
T Consensus       157 ~~~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~--------~~~--------l~-----~~~~~~~~~l~~~l~~~gV~  215 (441)
T PRK08010        157 LPGHLGILGGGYIGVEFASMFANFGSKVTILEAA--------SLF--------LP-----REDRDIADNIATILRDQGVD  215 (441)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC--------CCC--------CC-----CcCHHHHHHHHHHHHhCCCE
Confidence            4569999999999999999999999999999931        000        11     12356778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+.++++++.+|.|++|+|.+|+...
T Consensus       216 v~~~~~v~~i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn~~~  258 (441)
T PRK08010        216 IILNAHVERISHHENQVQVHSEHAQLAVDALLIASGRQPATAS  258 (441)
T ss_pred             EEeCCEEEEEEEcCCEEEEEEcCCeEEeCEEEEeecCCcCCCC
Confidence            9988 79999877666777666667999999999999998753

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.01  E-value=6.4e-09  Score=101.04  Aligned_cols=100  Identities=20%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+|+|+.        ..        -+|     ....++.+.+.+.+++.||+
T Consensus       171 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~--------~~--------~l~-----~~d~~~~~~l~~~l~~~gV~  229 (466)
T PRK07818        171 LPKSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFL--------DR--------ALP-----NEDAEVSKEIAKQYKKLGVK  229 (466)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecC--------CC--------cCC-----ccCHHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999931        00        011     12356778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE---CC--eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT---DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++++++.+++.+.+..   ++  .++.+|.||+|+|.+|+..
T Consensus       230 i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn~~  276 (466)
T PRK07818        230 ILTGTKVESIDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPRVE  276 (466)
T ss_pred             EEECCEEEEEEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccCCC
Confidence            9998 7999987665544432   33  3699999999999999875

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=99.01  E-value=5.5e-09  Score=101.90  Aligned_cols=118  Identities=23%  Similarity=0.244  Sum_probs=77.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc------CCCCCCCccee----c----CC-------Ccc--cC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM------ANDIAPGGQLT----T----TS-------DVE--NF---  110 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~------~~~~~~gg~~~----~----~~-------~~~--~~---  110 (382)
                      ..+||+|||||+||++||..+++.|.+|.|||+..      .+....||...    .    ..       +..  .+   
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m~CnpsiGG~akg~lvrEidalGg~~g~~~d~~giq~r~l   82 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQMSCNPAIGGIAKGHLVREIDALGGEMGKAIDKTGIQFRML   82 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHHcCCcEEEEecccccccccCCccccccchhhHHHHHHHhcCCHHHHHHhhccCceeec
Confidence            45899999999999999999999999999999642      11122222110    0    00       000  00   


Q ss_pred             -----CCC---CCCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCcEE-EEE-CCeEEEcCEEEEccCCCC
Q 016820          111 -----PGF---PQGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRPFK-VFT-DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       111 -----~~~---~~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~~~-v~~-~~~~~~~d~lvlA~G~~~  174 (382)
                           |..   ...++...+...+.+.+.+. +++++.++|.++..+++.+. |.+ ++..+.++.||+|||...
T Consensus        83 n~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~grV~GV~t~dG~~I~Ak~VIlATGTFL  157 (618)
T PRK05192         83 NTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENGRVVGVVTQDGLEFRAKAVVLTTGTFL  157 (618)
T ss_pred             ccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCCEEEEEEECCCCEEECCEEEEeeCcch
Confidence                 000   01234456667777777655 89998888988876665543 444 455799999999999754

>PRK08244 hypothetical protein; Provisional

Probab=99.01  E-value=4.8e-09  Score=102.75  Aligned_cols=120  Identities=20%  Similarity=0.174  Sum_probs=80.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc------------------------------eecCCCc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ------------------------------LTTTSDV  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~------------------------------~~~~~~~  107 (382)
                      ++||+||||||+|+++|..|++.|++|+|||+.........+.                              +......
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   81 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTR   81 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEeccccc
Confidence            4799999999999999999999999999999743221111100                              0000000


Q ss_pred             ccCCC----CC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE---CC-eEEEcCEEEEccCCCCcC
Q 016820          108 ENFPG----FP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT---DS-KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       108 ~~~~~----~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lvlA~G~~~~~  176 (382)
                      ..+..    .+  ..+....+.+.+.+.+.+.|++++.+ +++++..+++.+.+..   ++ .++++|+||.|.|.++..
T Consensus        82 ~~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~a~~vVgADG~~S~v  161 (493)
T PRK08244         82 LDFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDGVEVVVRGPDGLRTLTSSYVVGADGAGSIV  161 (493)
T ss_pred             CCcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCeEEEEEEeCCccEEEEeCEEEECCCCChHH
Confidence            00100    00  11234567777788888889999888 7989987777665543   23 369999999999998754


Q ss_pred             C
Q 016820          177 L  177 (382)
Q Consensus       177 ~  177 (382)
                      -
T Consensus       162 R  162 (493)
T PRK08244        162 R  162 (493)
T ss_pred             H
Confidence            3

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=99.00  E-value=6.6e-09  Score=100.92  Aligned_cols=101  Identities=20%  Similarity=0.196  Sum_probs=80.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|++|+++|..|++.|.+|+++++.    ..    +        ++     ...+++.+.+++.+++.|++
T Consensus       171 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----~~----~--------l~-----~~~~~~~~~l~~~l~~~gV~  229 (462)
T PRK06416        171 VPKSLVVIGGGYIGVEFASAYASLGAEVTIVEAL----PR----I--------LP-----GEDKEISKLAERALKKRGIK  229 (462)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----CC----c--------CC-----cCCHHHHHHHHHHHHHcCCE
Confidence            3578999999999999999999999999999941    00    0        11     12367778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CC---eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DS---KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+.. ++   .++.+|.||+|+|.+|+...
T Consensus       230 i~~~~~V~~i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~~~~  276 (462)
T PRK06416        230 IKTGAKAKKVEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPNTEN  276 (462)
T ss_pred             EEeCCEEEEEEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccCCCC
Confidence            9998 7999987766666553 33   46999999999999998754

>PRK13748 putative mercuric reductase; Provisional

Probab=99.00  E-value=6.1e-09  Score=103.73  Aligned_cols=100  Identities=20%  Similarity=0.183  Sum_probs=81.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||+|+.|+++|..|.+.|.+|+|+++.         .        .++     ...+++.+.+++.+++.||+
T Consensus       269 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~---------~--------~l~-----~~d~~~~~~l~~~l~~~gI~  326 (561)
T PRK13748        269 IPERLAVIGSSVVALELAQAFARLGSKVTILARS---------T--------LFF-----REDPAIGEAVTAAFRAEGIE  326 (561)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecC---------c--------ccc-----ccCHHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999931         0        011     12467788888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++.+++.+.+.++++++.+|.||+|+|.+|+...
T Consensus       327 i~~~~~v~~i~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn~~~  369 (561)
T PRK13748        327 VLEHTQASQVAHVDGEFVLTTGHGELRADKLLVATGRAPNTRS  369 (561)
T ss_pred             EEcCCEEEEEEecCCEEEEEecCCeEEeCEEEEccCCCcCCCC
Confidence            9988 78888876666667666668999999999999998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=99.00  E-value=7.1e-09  Score=100.12  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=78.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||||+.|+++|..|++.|.+|+|+++.                    +. +.....+++.+.+++.+++.||+
T Consensus       165 ~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~--------------------~~-il~~~d~~~~~~~~~~l~~~gI~  223 (450)
T TIGR01421       165 LPKRVVIVGAGYIAVELAGVLHGLGSETHLVIRH--------------------ER-VLRSFDSMISETITEEYEKEGIN  223 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC--------------------CC-CCcccCHHHHHHHHHHHHHcCCE
Confidence            4579999999999999999999999999999931                    00 01113456778888888999999


Q ss_pred             EEEe-eEEEEEecCCc-EEEEEC-C-eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP-FKVFTD-S-KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~-~~v~~~-~-~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++.+.+. +.+..+ + ..+.+|.||+|+|.+|+...
T Consensus       224 i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn~~~  269 (450)
T TIGR01421       224 VHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPNTKG  269 (450)
T ss_pred             EEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcCccc
Confidence            9998 68888765433 444443 3 45999999999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=99.00  E-value=3.5e-08  Score=92.29  Aligned_cols=50  Identities=20%  Similarity=0.256  Sum_probs=39.6

Q ss_pred             CCcC-CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCcccccc
Q 016820          328 TTHT-SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE  379 (382)
Q Consensus       328 ~~~t-~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~  379 (382)
                      ++++ ..||||++|.+.+..  .-..|..+|..|+.|++..+.++++...+.+
T Consensus       324 ~l~~k~~~~l~~AGqi~g~~--Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~  374 (436)
T PRK05335        324 TLQLKKRPNLFFAGQITGVE--GYVESAASGLLAGINAARLALGKEPVIPPPT  374 (436)
T ss_pred             hccccCCCCEEeeeeecCch--HHHHHHHHHHHHHHHHHHHhcCCCCCCCCcc
Confidence            4555 579999999999742  2339999999999999999998887655443

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=99.00  E-value=6.5e-09  Score=101.06  Aligned_cols=100  Identities=20%  Similarity=0.121  Sum_probs=77.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||||+.|+++|..|++.|.+|+++++.         .        .+     ....+++.+.+++.+++.||+
T Consensus       179 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~---------~--------~l-----~~~d~~~~~~l~~~L~~~gV~  236 (484)
T TIGR01438       179 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS---------I--------LL-----RGFDQDCANKVGEHMEEHGVK  236 (484)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCcEEEEEec---------c--------cc-----cccCHHHHHHHHHHHHHcCCE
Confidence            3468999999999999999999999999999830         0        01     123467888888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CC---eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DS---KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~---~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++..++.+.+.. ++   .++.+|.|++|+|..|+...
T Consensus       237 i~~~~~v~~v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn~~~  283 (484)
T TIGR01438       237 FKRQFVPIKVEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDACTRK  283 (484)
T ss_pred             EEeCceEEEEEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcCCCc
Confidence            9998 5778876555544443 22   36999999999999998753

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK06184 hypothetical protein; Provisional

Probab=99.00  E-value=8.4e-09  Score=101.22  Aligned_cols=120  Identities=19%  Similarity=0.169  Sum_probs=80.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcc-----------------------------eecC-CC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQ-----------------------------LTTT-SD  106 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~-----------------------------~~~~-~~  106 (382)
                      .+||+||||||+|+++|..|++.|++|+|||+....... .+..                             +... ..
T Consensus         3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~   82 (502)
T PRK06184          3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGS   82 (502)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCce
Confidence            579999999999999999999999999999974221110 0000                             0000 00


Q ss_pred             c------ccC---C--CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEE
Q 016820          107 V------ENF---P--GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIV  168 (382)
Q Consensus       107 ~------~~~---~--~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvl  168 (382)
                      .      ...   +  .++  ..+....+.+.+.+.+.+.|++++.+ ++++++.+++.+++..    ++.++++|+||.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVg  162 (502)
T PRK06184         83 VAESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVG  162 (502)
T ss_pred             EEEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEE
Confidence            0      000   0  001  11233456667778788889999988 7999988777776654    335699999999


Q ss_pred             ccCCCCcCC
Q 016820          169 ATGAVAKKL  177 (382)
Q Consensus       169 A~G~~~~~~  177 (382)
                      |+|.++..-
T Consensus       163 ADG~~S~vR  171 (502)
T PRK06184        163 ADGGRSFVR  171 (502)
T ss_pred             CCCCchHHH
Confidence            999987543

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.99  E-value=6.5e-09  Score=100.98  Aligned_cols=101  Identities=21%  Similarity=0.181  Sum_probs=80.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||+|+.|+++|..|++.|.+|+|+++.    .             .+    ......++.+.+.+.+++.|++
T Consensus       174 ~~~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~----~-------------~~----l~~~d~~~~~~l~~~l~~~gI~  232 (461)
T PRK05249        174 LPRSLIIYGAGVIGCEYASIFAALGVKVTLINTR----D-------------RL----LSFLDDEISDALSYHLRDSGVT  232 (461)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C-------------Cc----CCcCCHHHHHHHHHHHHHcCCE
Confidence            4679999999999999999999999999999941    0             00    0123467788888888899999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .++.++.+++.+.+.. ++.++.+|.||+|+|.+|+...
T Consensus       233 v~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~~  276 (461)
T PRK05249        233 IRHNEEVEKVEGGDDGVIVHLKSGKKIKADCLLYANGRTGNTDG  276 (461)
T ss_pred             EEECCEEEEEEEeCCeEEEEECCCCEEEeCEEEEeecCCccccC
Confidence            9988 7888887666666654 3456999999999999998753

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=98.99  E-value=6.1e-09  Score=97.43  Aligned_cols=57  Identities=26%  Similarity=0.313  Sum_probs=48.5

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+.+.+.+.+.+.|++++.+ +|++|+.+++.+. |.++++.+++|.||+|+|.+.
T Consensus       145 ~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s  203 (358)
T PF01266_consen  145 DPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWS  203 (358)
T ss_dssp             EHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGH
T ss_pred             cccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEecccccc
Confidence            46788888999999999999999 8999999999988 999888899999999999854

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.99  E-value=4.2e-09  Score=100.58  Aligned_cols=121  Identities=13%  Similarity=0.138  Sum_probs=80.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC---------CCCCCccee--------------c-----CCCc--
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN---------DIAPGGQLT--------------T-----TSDV--  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---------~~~~gg~~~--------------~-----~~~~--  107 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|+....         ....+..+.              .     ....  
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~   81 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQGSGLEVLLLDGGPLSVKPFDPQAPFEPRVSALSAASQRILERLGAWDGIAARRASPYSE   81 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhcCCCEEEEEcCCCccccccccCCCCCccchhhhHHHHHHHHHCChhhhhhHhhCcccee
Confidence            479999999999999999999999999999975310         000111100              0     0000  


Q ss_pred             -----------ccCCCC----C---CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEE
Q 016820          108 -----------ENFPGF----P---QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVI  167 (382)
Q Consensus       108 -----------~~~~~~----~---~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lv  167 (382)
                                 ..+...    +   ..+....+.+.+.+.+.+.+++++.+ ++.+++.+++.+.+...+ .++.+|.||
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV  161 (405)
T PRK05714         82 MQVWDGSGTGQIHFSAASVHAEVLGHIVENRVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLRAPLVV  161 (405)
T ss_pred             EEEEcCCCCceEEecccccCCCccEEEEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEEE
Confidence                       000000    0   01223456667777777789999888 799998887777776544 579999999


Q ss_pred             EccCCCCcCCC
Q 016820          168 VATGAVAKKLQ  178 (382)
Q Consensus       168 lA~G~~~~~~~  178 (382)
                      .|.|.++..-.
T Consensus       162 gAdG~~S~vR~  172 (405)
T PRK05714        162 AADGANSAVRR  172 (405)
T ss_pred             EecCCCchhHH
Confidence            99999775543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.99  E-value=2.4e-08  Score=87.94  Aligned_cols=117  Identities=16%  Similarity=0.047  Sum_probs=74.7

Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh-----------hcccccc
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF-----------VDGQLDL  316 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~-----------~~~~~~~  316 (382)
                      .+.+++.|.-++.+..+.+.+-.++.  ++.|....   .....+.+|..++++|.--...+           +.+.+.-
T Consensus       265 ~~~f~~~Gg~~m~Gd~V~~a~~~~~~--v~~i~trn---~~diP~~a~~~VLAsGsffskGLvae~d~I~EPIf~ldi~~  339 (421)
T COG3075         265 QRQFEQLGGLWMPGDEVKKATCKGGR--VTEIYTRN---HADIPLRADFYVLASGSFFSKGLVAERDKIYEPIFDLDILQ  339 (421)
T ss_pred             HHHHHHcCceEecCCceeeeeeeCCe--EEEEEecc---cccCCCChhHeeeeccccccccchhhhhhhhcchhhccccc
Confidence            45677788889999999988877763  66666654   33356788999999886432211           1122222


Q ss_pred             cCC-----------------CceeeCCCCCcC-----CCCceEEecccCCchhh-----HHHHHHhhHHHHHHHHHHHHH
Q 016820          317 HSD-----------------GYIITKPGTTHT-----SVPGVFAAGDVQDKKYR-----QAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       317 ~~~-----------------g~i~vd~~~~~t-----~~~~vya~GD~~~~~~~-----~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      +++                 -.+.+|+ +++.     ...|+|+||.+.+....     ....|+..|..+|+.|++...
T Consensus       340 ~~dR~~W~~~~ffapqp~~qfGV~tD~-~lrp~~~g~~~eNL~aiGavlgGfdpi~egcGsGVaivta~~aa~qi~~~~~  418 (421)
T COG3075         340 TADRAEWYHSDFFAPQPYQQFGVTTDD-TLRPSRGGQTIENLYAIGAVLGGFDPIAEGCGSGVAIVTALHAAEQIAERAG  418 (421)
T ss_pred             CcchhhhhhccccCCChhHHhCccccc-ccCccccchHHHHHHHHHHHhcCCcHHHhcCCcchHHHHHHHHHHHHHHHhc
Confidence            221                 1244555 4443     35789999999875322     234677888888888887765


Q ss_pred             H
Q 016820          370 E  370 (382)
Q Consensus       370 ~  370 (382)
                      +
T Consensus       419 ~  419 (421)
T COG3075         419 G  419 (421)
T ss_pred             c
Confidence            4

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.99  E-value=7.5e-09  Score=102.60  Aligned_cols=51  Identities=22%  Similarity=0.162  Sum_probs=40.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+|+.|++||+|+|++ ..       ......+...|+.|+++++.+...
T Consensus       357 ~GGi~~d~-~~~t~i~GLyAaGe~a~~G~hGanrl~g~sl~~~~v~G~~ag~~aa~~~~~  415 (580)
T TIGR01176       357 MGGIETDI-NCETRIKGLFAVGECASVGLHGANRLGSNSLAELVVFGRRAGEAAAERAAR  415 (580)
T ss_pred             CCCeeECc-CcccccCCeEeeecccccCcCCCccccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            57789998 67899999999999863 11       135677899999999999988754

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>TIGR00275 flavoprotein, HI0933 family

Probab=98.99  E-value=6.3e-09  Score=98.85  Aligned_cols=113  Identities=33%  Similarity=0.426  Sum_probs=79.3

Q ss_pred             EEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC----CCCcceecCCC--c----ccCCC-------------------
Q 016820           62 CIIGSGPAAHTAAIYAARAELKPILFEGWMANDI----APGGQLTTTSD--V----ENFPG-------------------  112 (382)
Q Consensus        62 vIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~----~~gg~~~~~~~--~----~~~~~-------------------  112 (382)
                      +|||||++|+++|+.|++.|.+|+|+|+...-+.    .-+|.+..+..  .    ..++.                   
T Consensus         1 vIIGgG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~~~sG~grcn~tn~~~~~~~~~~~~~~~~~~~~~l~~~~~~d~~~   80 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAREGLSVLLLEKNKKIGKKLLISGGGRCNLTNSCPTPEFVAYYPRNGKFLRSALSRFSNKDLID   80 (400)
T ss_pred             CEEEEeHHHHHHHHHHHhcCCcEEEEecCccccccccccCCceEEccCCCcchhHHHhcCCCcHHHHHHHHhCCHHHHHH
Confidence            6999999999999999999999999996432111    11122221110  0    00000                   


Q ss_pred             -----------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          113 -----------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       113 -----------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                                       +|......++.+.+.+.+++.+++++.+ .|.++..+++.+.+.+++..+.+|.||+|+|..+
T Consensus        81 ~~~~~Gv~~~~~~~g~~~p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~~v~~~~~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275        81 FFESLGLELKVEEDGRVFPCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDDNGFGVETSGGEYEADKVILATGGLS  160 (400)
T ss_pred             HHHHcCCeeEEecCCEeECCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCeEEEEECCcEEEcCEEEECCCCcc
Confidence                             1112234677888888888899999988 6889987777777777777899999999999864

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=98.98  E-value=6.4e-08  Score=90.24  Aligned_cols=114  Identities=23%  Similarity=0.262  Sum_probs=75.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC----CCCCCcceecCC--Cc--------------------------
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN----DIAPGGQLTTTS--DV--------------------------  107 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~----~~~~gg~~~~~~--~~--------------------------  107 (382)
                      ||+|||+|.|||++|..|.+. ++|+|+.|....    .+..||......  +.                          
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~~sS~~AQGGIAa~~~~~Ds~~~Hv~DTL~AG~glcD~~aV~~iv~   87 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGESSSYWAQGGIAAALSEDDSPELHVADTLAAGAGLCDEEAVEFIVS   87 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCCccchhhcCceEeeeCCCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            899999999999999999998 999999974322    112233211000  00                          


Q ss_pred             -------------ccC----CC----------------CCCCCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCC-c
Q 016820          108 -------------ENF----PG----------------FPQGILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSR-P  151 (382)
Q Consensus       108 -------------~~~----~~----------------~~~~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~-~  151 (382)
                                   ..|    .+                .....++.+++..|...+++ .+|+++.+ .+.++-.+++ .
T Consensus        88 ~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS~rRIlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~  167 (518)
T COG0029          88 EAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHSRRRILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIG  167 (518)
T ss_pred             hHHHHHHHHHHcCCCCcCCCCCceeeeeecccCCceEEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCce
Confidence                         000    00                00124778999999988876 69999999 6777766665 2


Q ss_pred             ---EEEEEC-C--eEEEcCEEEEccCCCC
Q 016820          152 ---FKVFTD-S--KSVLADTVIVATGAVA  174 (382)
Q Consensus       152 ---~~v~~~-~--~~~~~d~lvlA~G~~~  174 (382)
                         +.+... +  ..+.++.+|+|||.-.
T Consensus       168 ~~Gv~~~~~~~~~~~~~a~~vVLATGG~g  196 (518)
T COG0029         168 VAGVLVLNRNGELGTFRAKAVVLATGGLG  196 (518)
T ss_pred             EeEEEEecCCCeEEEEecCeEEEecCCCc
Confidence               333323 2  4588999999999854

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.98  E-value=1.9e-08  Score=97.96  Aligned_cols=101  Identities=16%  Similarity=0.219  Sum_probs=78.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++|+|||+|+.|+++|..|++.|.+|+|+++.    .             .+    ......++.+.+.+.+++.|++
T Consensus       182 ~~~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~----~-------------~~----l~~~d~~~~~~~~~~l~~~gi~  240 (475)
T PRK06327        182 VPKKLAVIGAGVIGLELGSVWRRLGAEVTILEAL----P-------------AF----LAAADEQVAKEAAKAFTKQGLD  240 (475)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----C-------------cc----CCcCCHHHHHHHHHHHHHcCcE
Confidence            4579999999999999999999999999999941    0             00    0112367778888888889999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-C--C--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-D--S--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~--~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ +|..++.+++.+.+.. +  +  ..+.+|.|++|+|.+|+...
T Consensus       241 i~~~~~v~~i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~~~~  288 (475)
T PRK06327        241 IHLGVKIGEIKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPNTDG  288 (475)
T ss_pred             EEeCcEEEEEEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccCCCC
Confidence            9998 7999987766555542 2  2  45999999999999998764

>PRK07846 mycothione reductase; Reviewed

Probab=98.98  E-value=1.8e-08  Score=97.29  Aligned_cols=130  Identities=18%  Similarity=0.165  Sum_probs=87.0

Q ss_pred             ccccccccccccccccC-CC-CCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           27 IVTTSSAAAAASFSATT-AP-KISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++||+.+..++...... .. +..... .....+.+++|||||+.|+++|..|+++|.+|+|+++.    ..    +   
T Consensus       134 iATGs~p~~p~i~g~~~~~~~~~~~~~-~l~~~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~----~~----l---  201 (451)
T PRK07846        134 IAAGSRPVIPPVIADSGVRYHTSDTIM-RLPELPESLVIVGGGFIAAEFAHVFSALGVRVTVVNRS----GR----L---  201 (451)
T ss_pred             EcCCCCCCCCCCCCcCCccEEchHHHh-hhhhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC----Cc----c---
Confidence            66888776554333211 11 111111 11224579999999999999999999999999999941    00    0   


Q ss_pred             CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCCC
Q 016820          105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                           +     .....++.+.+.+.. +.+++++.+ ++++++.+++.+.+.. ++.++.+|.|++|+|.+|+...+
T Consensus       202 -----l-----~~~d~~~~~~l~~l~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~l  267 (451)
T PRK07846        202 -----L-----RHLDDDISERFTELA-SKRWDVRLGRNVVGVSQDGSGVTLRLDDGSTVEADVLLVATGRVPNGDLL  267 (451)
T ss_pred             -----c-----cccCHHHHHHHHHHH-hcCeEEEeCCEEEEEEEcCCEEEEEECCCcEeecCEEEEEECCccCcccc
Confidence                 0     112345666665544 458999888 7889987666555554 44569999999999999987643

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.98  E-value=1.1e-08  Score=98.86  Aligned_cols=129  Identities=16%  Similarity=0.129  Sum_probs=89.2

Q ss_pred             ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820           27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD  106 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~  106 (382)
                      ++||+.+..++.........+...... .....+++|||+|++|+++|..+++.|.+|+++++.        ..+     
T Consensus       136 iATGs~p~~p~i~G~~~~~~~~~~~~l-~~~~~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~--------~~~-----  201 (446)
T TIGR01424       136 IAVGGRPQKPNLPGHELGITSNEAFHL-PTLPKSILILGGGYIAVEFAGIWRGLGVQVTLIYRG--------ELI-----  201 (446)
T ss_pred             EecCCcCCCCCCCCccceechHHhhcc-cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEeC--------CCC-----
Confidence            668877654432222111111111111 224578999999999999999999999999999931        000     


Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                         +     ....+++.+.+.+.+++.|++++.+ ++..++.+++.+.+.. ++.++.+|.||+|+|..|+..
T Consensus       202 ---l-----~~~d~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn~~  266 (446)
T TIGR01424       202 ---L-----RGFDDDMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIVADVVLFATGRSPNTK  266 (446)
T ss_pred             ---C-----cccCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEeecCEEEEeeCCCcCCC
Confidence               1     1123577778888888999999998 7889987655555554 455699999999999998765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=98.97  E-value=8.9e-09  Score=100.51  Aligned_cols=130  Identities=19%  Similarity=0.190  Sum_probs=91.3

Q ss_pred             ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820           27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD  106 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~  106 (382)
                      +++|+.+..+..........+..... .....++|+|||+|+.|+++|..+++.|.+|+|+++.                
T Consensus       173 IATGs~p~~p~ipG~~~~~~~~~~~~-l~~~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~----------------  235 (499)
T PLN02507        173 IATGSRAQRPNIPGKELAITSDEALS-LEELPKRAVVLGGGYIAVEFASIWRGMGATVDLFFRK----------------  235 (499)
T ss_pred             EecCCCCCCCCCCCccceechHHhhh-hhhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEec----------------
Confidence            66888765443322211111111111 1234579999999999999999999999999999931                


Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820          107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~  178 (382)
                           ..+......++.+.+.+.+++.||+++.+ ++.+++.+++.+.+..+ +.++.+|.|++|+|.+|+...
T Consensus       236 -----~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  304 (499)
T PLN02507        236 -----ELPLRGFDDEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGIKVITDHGEEFVADVVLFATGRAPNTKR  304 (499)
T ss_pred             -----CCcCcccCHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeEEEEECCCcEEEcCEEEEeecCCCCCCC
Confidence                 00011134677888888889999999999 79999876666666554 456999999999999998754

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.97  E-value=7.9e-09  Score=86.04  Aligned_cols=118  Identities=29%  Similarity=0.359  Sum_probs=76.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc--CCCCCCCcceecCCCc----------ccCCCCC--C---CCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM--ANDIAPGGQLTTTSDV----------ENFPGFP--Q---GIL  118 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~--~~~~~~gg~~~~~~~~----------~~~~~~~--~---~~~  118 (382)
                      ....||+||||||+||+||++|++.|.+|+++|+..  +.+...||.+...--.          ...++-+  +   -..
T Consensus        28 ~~esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~d  107 (262)
T COG1635          28 YLESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVAD  107 (262)
T ss_pred             hhhccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEec
Confidence            356899999999999999999999999999999642  1222223332211000          0001111  0   124


Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEE-EE------------ECCeEEEcCEEEEccCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFK-VF------------TDSKSVLADTVIVATGAV  173 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~-v~------------~~~~~~~~d~lvlA~G~~  173 (382)
                      ..++...+...+-+.|.++++. .|.++-..++ ++. +.            .|--.++++++|=|||..
T Consensus       108 s~e~~skl~~~a~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHd  177 (262)
T COG1635         108 SAEFASKLAARALDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHD  177 (262)
T ss_pred             HHHHHHHHHHHHHhcCceeeecceEEEEEEecCCceEEEEEecchhhhcccccCcceeeEEEEEeCCCCc
Confidence            5677777888888889999988 6888765554 221 11            133458888999999864

>PRK07236 hypothetical protein; Provisional

Probab=98.96  E-value=1.1e-08  Score=97.07  Aligned_cols=119  Identities=17%  Similarity=0.135  Sum_probs=74.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC---------Ccc-----cCC----------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS---------DVE-----NFP----------  111 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~---------~~~-----~~~----------  111 (382)
                      +..++|+|||||++|+++|..|++.|++|+|+|+........|+.+....         ...     ..+          
T Consensus         4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~   83 (386)
T PRK07236          4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRD   83 (386)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCC
Confidence            34589999999999999999999999999999975322222222111000         000     000          


Q ss_pred             C-------CC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcC
Q 016820          112 G-------FP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       112 ~-------~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~  176 (382)
                      +       .+ .......+.+.+.+.+  .+++++.+ +|+++..+++.+.+... +.++.+|.||.|.|.++..
T Consensus        84 g~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vIgADG~~S~v  156 (386)
T PRK07236         84 GRVVQRRPMPQTQTSWNVLYRALRAAF--PAERYHLGETLVGFEQDGDRVTARFADGRRETADLLVGADGGRSTV  156 (386)
T ss_pred             CCEeeccCCCccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCchH
Confidence            0       00 0112333444443322  24567777 69999887777777654 4579999999999997654

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.96  E-value=5.1e-09  Score=96.89  Aligned_cols=113  Identities=25%  Similarity=0.280  Sum_probs=72.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcc---------------eecCCCcc-------c--
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQ---------------LTTTSDVE-------N--  109 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~---------------~~~~~~~~-------~--  109 (382)
                      ||+|||||.||++||+.+++.|++|.|+..      +..+....|+.               +....+..       +  
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            799999999999999999999999999942      11111112211               00000000       0  


Q ss_pred             --CCCCC--CCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcE-EEEE-CCeEEEcCEEEEccCC
Q 016820          110 --FPGFP--QGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPF-KVFT-DSKSVLADTVIVATGA  172 (382)
Q Consensus       110 --~~~~~--~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~-~v~~-~~~~~~~d~lvlA~G~  172 (382)
                        .+...  ...+...+..++++.+.+ .+++++.++|+++..+++.+ .|.+ ++..+.+|.+|+|||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence              01111  134677888888888877 58999888999998877654 3444 4566999999999998

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07190 hypothetical protein; Provisional

Probab=98.96  E-value=1.3e-08  Score=99.07  Aligned_cols=118  Identities=15%  Similarity=0.167  Sum_probs=79.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcce---------------------------ecC-----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL---------------------------TTT-----  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~---------------------------~~~-----  104 (382)
                      ..+||+||||||+|+++|..|++.|++|+|||+.....  ..+..                           ...     
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~--~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPL--EVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWAN   81 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCccc--ccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecC
Confidence            45799999999999999999999999999999743211  01110                           000     


Q ss_pred             CCc-----c---cCCC--CC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEcc
Q 016820          105 SDV-----E---NFPG--FP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVAT  170 (382)
Q Consensus       105 ~~~-----~---~~~~--~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~  170 (382)
                      ...     .   ....  .+  ..+....+.+.+.+.+.+.|++++.+ +|+++..+++.+.+.. ++.++++++||.|+
T Consensus        82 g~~i~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgAD  161 (487)
T PRK07190         82 GKFISRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGAD  161 (487)
T ss_pred             CceEeeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECC
Confidence            000     0   0000  00  11223455666777788889999998 7999988777766554 34579999999999


Q ss_pred             CCCCcC
Q 016820          171 GAVAKK  176 (382)
Q Consensus       171 G~~~~~  176 (382)
                      |.++..
T Consensus       162 G~~S~v  167 (487)
T PRK07190        162 GSRSFV  167 (487)
T ss_pred             CCCHHH
Confidence            997643

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.95  E-value=8.1e-09  Score=97.49  Aligned_cols=119  Identities=14%  Similarity=0.138  Sum_probs=81.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC---CCcceecC--------------------CCc--------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA---PGGQLTTT--------------------SDV--------  107 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~---~gg~~~~~--------------------~~~--------  107 (382)
                      .||+|||||++|+++|..|++.|++|+|+|+.......   .+..+...                    ...        
T Consensus         2 ~dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~   81 (374)
T PRK06617          2 SNTVILGCGLSGMLTALSFAQKGIKTTIFESKSVKSPEFFKDIRTTALTPHSKNFLFSIDIWEELEKFVAEMQDIYVVDN   81 (374)
T ss_pred             ccEEEECCCHHHHHHHHHHHcCCCeEEEecCCCCCCCccCcCceEEEeCHHHHHHHHHCCcHHHHHhhcCCCcEEEEEEC
Confidence            68999999999999999999999999999964211111   01100000                    000        


Q ss_pred             -----ccCCC-----CCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          108 -----ENFPG-----FPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       108 -----~~~~~-----~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                           ..+..     +...+...++.+.+.+.+.+.+ ++++.+ +++++..+++.+.+..+++++++|.||.|.|.++.
T Consensus        82 ~g~~~~~~~~~~~~~~g~~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~~~~~adlvIgADG~~S~  161 (374)
T PRK06617         82 KASEILDLRNDADAVLGYVVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHNDYSIIKFDDKQIKCNLLIICDGANSK  161 (374)
T ss_pred             CCceEEEecCCCCCCcEEEEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeEEEEEcCCEEeeCEEEEeCCCCch
Confidence                 00000     0011345778888888777775 888877 78898877777777777778999999999999875


Q ss_pred             CC
Q 016820          176 KL  177 (382)
Q Consensus       176 ~~  177 (382)
                      .-
T Consensus       162 vR  163 (374)
T PRK06617        162 VR  163 (374)
T ss_pred             hH
Confidence            54

>PRK06116 glutathione reductase; Validated

Probab=98.94  E-value=1.4e-08  Score=98.27  Aligned_cols=101  Identities=17%  Similarity=0.135  Sum_probs=79.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+|+|||+|+.|+++|..|++.|.+|+++++.    .    .+             .....+++.+.+.+.+++.|++
T Consensus       166 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~----~----~~-------------l~~~~~~~~~~l~~~L~~~GV~  224 (450)
T PRK06116        166 LPKRVAVVGAGYIAVEFAGVLNGLGSETHLFVRG----D----AP-------------LRGFDPDIRETLVEEMEKKGIR  224 (450)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----C----CC-------------ccccCHHHHHHHHHHHHHCCcE
Confidence            4579999999999999999999999999999941    0    00             0113357778888888999999


Q ss_pred             EEEe-eEEEEEecCCc-EEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP-FKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++. +.+.+ ++.++.+|.||+|+|.+|+...
T Consensus       225 i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~~~~  269 (450)
T PRK06116        225 LHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPNTDG  269 (450)
T ss_pred             EECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcCCCC
Confidence            9988 79999876443 55554 4556999999999999998764

>PRK09126 hypothetical protein; Provisional

Probab=98.94  E-value=1.1e-08  Score=97.34  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=77.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC----CCCCcce-------------------ecCC--Cc-----
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND----IAPGGQL-------------------TTTS--DV-----  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~----~~~gg~~-------------------~~~~--~~-----  107 (382)
                      ++||+|||||++|+++|..|++.|++|+|+|+.....    ...|..+                   ....  ..     
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~   82 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKV   82 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEE
Confidence            5899999999999999999999999999999753210    1112110                   0000  00     


Q ss_pred             --------ccCCCC---CC----CCChHHHHHHHHHHH-HHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEc
Q 016820          108 --------ENFPGF---PQ----GILGGDLMDRCRNQS-LRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVA  169 (382)
Q Consensus       108 --------~~~~~~---~~----~~~~~~~~~~~~~~~-~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA  169 (382)
                              ..++..   ..    .+....+.+.+.+.+ +..|++++.+ ++++++.+++.+.+.. ++.++.+|.||.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~~~v~~~~g~~~~a~~vI~A  162 (392)
T PRK09126         83 LNGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDGAQVTLANGRRLTARLLVAA  162 (392)
T ss_pred             EcCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCeEEEEEcCCCEEEeCEEEEe
Confidence                    000000   00    012233444444444 3468999988 7889987777776664 4457999999999


Q ss_pred             cCCCCcCCC
Q 016820          170 TGAVAKKLQ  178 (382)
Q Consensus       170 ~G~~~~~~~  178 (382)
                      .|..+....
T Consensus       163 dG~~S~vr~  171 (392)
T PRK09126        163 DSRFSATRR  171 (392)
T ss_pred             CCCCchhhH
Confidence            999876554

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.94  E-value=1.9e-08  Score=97.64  Aligned_cols=101  Identities=14%  Similarity=0.092  Sum_probs=77.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||+|+.|+++|..+.+.|.+|+|+|+.    ..            -++     ....++.+.+++.+++.|++
T Consensus       173 ~~~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~----~~------------il~-----~~d~~~~~~l~~~l~~~gV~  231 (466)
T PRK06115        173 VPKHLVVIGAGVIGLELGSVWRRLGAQVTVVEYL----DR------------ICP-----GTDTETAKTLQKALTKQGMK  231 (466)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEeCC----CC------------CCC-----CCCHHHHHHHHHHHHhcCCE
Confidence            4689999999999999999999999999999931    00            011     12356778888888899999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE------CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT------DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~------~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.++..+++.+.+..      ++..+.+|.|++|+|..|+...
T Consensus       232 i~~~~~V~~i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~~  280 (466)
T PRK06115        232 FKLGSKVTGATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPYTQG  280 (466)
T ss_pred             EEECcEEEEEEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCcccccc
Confidence            9998 7989987655554432      1246999999999999997653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=98.93  E-value=1.4e-08  Score=96.22  Aligned_cols=120  Identities=23%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC--ccee-----------c-----------------C-CC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG--GQLT-----------T-----------------T-SD  106 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g--g~~~-----------~-----------------~-~~  106 (382)
                      .+||+|||||++|+++|..|++.|++|+|||+....-...|  ..+.           .                 . ..
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~   81 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGG   81 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCC
Confidence            47999999999999999999999999999997511111111  1000           0                 0 00


Q ss_pred             --cccC-----C--CCCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCC
Q 016820          107 --VENF-----P--GFPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAV  173 (382)
Q Consensus       107 --~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~  173 (382)
                        ...+     .  .+...+...++...+.+.+.+.+ ++++.+ +|+.++.+++.+.+..  ++.++++|.||-|.|.+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~  161 (387)
T COG0654          82 RRLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGAN  161 (387)
T ss_pred             ceeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCc
Confidence              0000     0  00012455788888988888876 899998 7999998887766554  45569999999999997


Q ss_pred             CcCC
Q 016820          174 AKKL  177 (382)
Q Consensus       174 ~~~~  177 (382)
                      +..-
T Consensus       162 S~vR  165 (387)
T COG0654         162 SAVR  165 (387)
T ss_pred             hHHH
Confidence            6443

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=98.92  E-value=8.9e-09  Score=97.55  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=79.3

Q ss_pred             cEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCC-----ccee-----------cCCC-------c--------
Q 016820           60 KVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPG-----GQLT-----------TTSD-------V--------  107 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~g-----g~~~-----------~~~~-------~--------  107 (382)
                      ||+|||||++|+++|..|++.| ++|+|+|+........+     ..+.           ....       .        
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~   80 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANSPSAAQPGFDARSLALSYGSKQILEKLGLWPKLAPFATPILDIHVSDQ   80 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCCccccCCCCCCeeEeccHHHHHHHHHCCChhhhHhhcCccceEEEEcC
Confidence            7999999999999999999999 99999997532222111     0000           0000       0        


Q ss_pred             -----ccCC----CCC---CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCC
Q 016820          108 -----ENFP----GFP---QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGA  172 (382)
Q Consensus       108 -----~~~~----~~~---~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~  172 (382)
                           ..+.    ..+   ..+...++.+.+.+.+.+. |++++.+ +|+++..+++.+.+..+ +.++.+|.||.|.|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vV~AdG~  160 (382)
T TIGR01984        81 GHFGATHLRASEFGLPALGYVVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYVRVTLDNGQQLRAKLLIAADGA  160 (382)
T ss_pred             CCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeEEEEECCCCEEEeeEEEEecCC
Confidence                 0000    000   0134467778888877774 9999877 79999877777777654 456999999999998


Q ss_pred             CCcC
Q 016820          173 VAKK  176 (382)
Q Consensus       173 ~~~~  176 (382)
                      ++..
T Consensus       161 ~S~v  164 (382)
T TIGR01984       161 NSKV  164 (382)
T ss_pred             ChHH
Confidence            7643

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=98.92  E-value=1.3e-08  Score=96.73  Aligned_cols=122  Identities=18%  Similarity=0.082  Sum_probs=79.6

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------------ee-------------c-CCC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------------LT-------------T-TSD  106 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------------~~-------------~-~~~  106 (382)
                      .+..+||+|||||++|+++|..|++.|++|+|||+........+..              +.             . ...
T Consensus         4 ~~~~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~~~~~r~~~l~~~s~~~l~~lgl~~~~~~~~~~~~~~~~~~~~   83 (388)
T PRK07494          4 EKEHTDIAVIGGGPAGLAAAIALARAGASVALVAPEPPYADLRTTALLGPSIRFLERLGLWARLAPHAAPLQSMRIVDAT   83 (388)
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCCCCCcchhhCcHHHHHHHHHhCchhhhHhhcceeeEEEEEeCC
Confidence            3456899999999999999999999999999999753211110000              00             0 000


Q ss_pred             cc-------cCC-----CCC--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEc
Q 016820          107 VE-------NFP-----GFP--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVA  169 (382)
Q Consensus       107 ~~-------~~~-----~~~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA  169 (382)
                      ..       .+.     ..+  ..+...++.+.+.+.+.++ ++. +.+ +|.+++.+++.+.+..++ .++++|.||.|
T Consensus        84 g~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~~~-~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~vI~A  162 (388)
T PRK07494         84 GRLIRAPEVRFRAAEIGEDAFGYNIPNWLLNRALEARVAELPNIT-RFGDEAESVRPREDEVTVTLADGTTLSARLVVGA  162 (388)
T ss_pred             CCCCCCceEEEcHHhcCCCccEEEeEhHHHHHHHHHHHhcCCCcE-EECCeeEEEEEcCCeEEEEECCCCEEEEeEEEEe
Confidence            00       000     000  1234456777777777776 466 445 799998888878777644 46999999999


Q ss_pred             cCCCCcCC
Q 016820          170 TGAVAKKL  177 (382)
Q Consensus       170 ~G~~~~~~  177 (382)
                      +|..+...
T Consensus       163 dG~~S~vr  170 (388)
T PRK07494        163 DGRNSPVR  170 (388)
T ss_pred             cCCCchhH
Confidence            99976443

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.92  E-value=1.2e-08  Score=97.21  Aligned_cols=121  Identities=21%  Similarity=0.269  Sum_probs=77.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc---CCCeEEEeccc-CCCCCCC-----ccee--------------c----C-----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWM-ANDIAPG-----GQLT--------------T----T-----  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~-~~~~~~g-----g~~~--------------~----~-----  104 (382)
                      ..+||+|||||++|+++|+.|++.   |++|+|+|+.. ......+     ..+.              .    .     
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~   81 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFAPESDAHPGFDARAIALAAGTCQQLARLGVWQALADCATPITH   81 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCCcccccCCCCCccceeccHHHHHHHHHCCChhhhHhhcCCccE
Confidence            458999999999999999999998   99999999731 1111111     0000              0    0     


Q ss_pred             -----CC-cc--cCC----CCC---CCCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEE
Q 016820          105 -----SD-VE--NFP----GFP---QGILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTV  166 (382)
Q Consensus       105 -----~~-~~--~~~----~~~---~~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~l  166 (382)
                           .. ..  .+.    +.+   ..+...++.+.+.+.+.+ .|++++.+ +++++..+++.+.+.+++ ..+.+|.|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~a~~v  161 (395)
T PRK05732         82 IHVSDRGHAGFVRLDAEDYGVPALGYVVELHDVGQRLFALLDKAPGVTLHCPARVANVERTQGSVRVTLDDGETLTGRLL  161 (395)
T ss_pred             EEEecCCCCceEEeehhhcCCCccEEEEEhHHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCCeEEEEECCCCEEEeCEE
Confidence                 00 00  000    000   012234555566665555 47899877 788998777777777644 46999999


Q ss_pred             EEccCCCCcCC
Q 016820          167 IVATGAVAKKL  177 (382)
Q Consensus       167 vlA~G~~~~~~  177 (382)
                      |.|.|.++..-
T Consensus       162 I~AdG~~S~vr  172 (395)
T PRK05732        162 VAADGSHSALR  172 (395)
T ss_pred             EEecCCChhhH
Confidence            99999976543

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.92  E-value=2e-08  Score=97.50  Aligned_cols=100  Identities=18%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||||+.|+++|..|++.|.+|+|||+.    .    .+        .     ....+++.+.+++.+++. ++
T Consensus       173 ~~~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~----~----~i--------l-----~~~d~~~~~~~~~~l~~~-v~  230 (471)
T PRK06467        173 VPKRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMF----D----QV--------I-----PAADKDIVKVFTKRIKKQ-FN  230 (471)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEecC----C----CC--------C-----CcCCHHHHHHHHHHHhhc-eE
Confidence            4579999999999999999999999999999931    0    00        1     113466777788877777 99


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-C----CeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-D----SKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~----~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++.+++.+.+.. +    ..++.+|.||+|+|.+|+...
T Consensus       231 i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn~~~  278 (471)
T PRK06467        231 IMLETKVTAVEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPNGKL  278 (471)
T ss_pred             EEcCCEEEEEEEcCCEEEEEEEeCCCcceEEEeCEEEEeecccccCCc
Confidence            9888 6888876665555543 1    135999999999999998763

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=98.92  E-value=2.2e-08  Score=97.24  Aligned_cols=101  Identities=17%  Similarity=0.168  Sum_probs=79.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+++++.                    +.. ......++.+.+.+.+++.||+
T Consensus       176 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~--------------------~~~-l~~~d~~~~~~l~~~L~~~gV~  234 (466)
T PRK07845        176 LPEHLIVVGSGVTGAEFASAYTELGVKVTLVSSR--------------------DRV-LPGEDADAAEVLEEVFARRGMT  234 (466)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcC--------------------CcC-CCCCCHHHHHHHHHHHHHCCcE
Confidence            3578999999999999999999999999999931                    000 0112456778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++..++.+++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus       235 i~~~~~v~~v~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn~~~  278 (466)
T PRK07845        235 VLKRSRAESVERTGDGVVVTLTDGRTVEGSHALMAVGSVPNTAG  278 (466)
T ss_pred             EEcCCEEEEEEEeCCEEEEEECCCcEEEecEEEEeecCCcCCCC
Confidence            9988 6889976666565554 4566999999999999998764

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.91  E-value=2e-08  Score=98.15  Aligned_cols=100  Identities=16%  Similarity=0.093  Sum_probs=78.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+|+++.                 ..+     .....++.+.+++.+++.||+
T Consensus       181 ~~~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~-----------------~~l-----~~~d~~~~~~l~~~l~~~GV~  238 (499)
T PTZ00052        181 DPGKTLIVGASYIGLETAGFLNELGFDVTVAVRS-----------------IPL-----RGFDRQCSEKVVEYMKEQGTL  238 (499)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC-----------------ccc-----ccCCHHHHHHHHHHHHHcCCE
Confidence            3468999999999999999999999999999820                 001     113456778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..+...++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus       239 i~~~~~v~~v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn~~~  282 (499)
T PTZ00052        239 FLEGVVPINIEKMDDKIKVLFSDGTTELFDTVLYATGRKPDIKG  282 (499)
T ss_pred             EEcCCeEEEEEEcCCeEEEEECCCCEEEcCEEEEeeCCCCCccc
Confidence            9998 5777876554455544 4566999999999999998764

>PTZ00058 glutathione reductase; Provisional

Probab=98.90  E-value=1.5e-08  Score=99.55  Aligned_cols=129  Identities=14%  Similarity=0.141  Sum_probs=87.7

Q ss_pred             ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820           27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD  106 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~  106 (382)
                      ++||+.+..+..........+...... . .+.+|+|||+|+.|+++|..|++.|.+|+++++.               +
T Consensus       208 IATGS~P~~P~IpG~~~v~ts~~~~~l-~-~pk~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~---------------~  270 (561)
T PTZ00058        208 IAVGNKPIFPDVKGKEFTISSDDFFKI-K-EAKRIGIAGSGYIAVELINVVNRLGAESYIFARG---------------N  270 (561)
T ss_pred             EecCCCCCCCCCCCceeEEEHHHHhhc-c-CCCEEEEECCcHHHHHHHHHHHHcCCcEEEEEec---------------c
Confidence            668887655443222111111111111 1 2579999999999999999999999999999931               0


Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEE-CC-eEEEcCEEEEccCCCCcCCC
Q 016820          107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFT-DS-KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~-~~-~~~~~d~lvlA~G~~~~~~~  178 (382)
                           .+ .....+++.+.+.+.+++.|++++.+ ++.+++.+++ .+.+.. ++ .++.+|.|++|+|.+|+...
T Consensus       271 -----~i-l~~~d~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~Pn~~~  340 (561)
T PTZ00058        271 -----RL-LRKFDETIINELENDMKKNNINIITHANVEEIEKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSPNTED  340 (561)
T ss_pred             -----cc-cccCCHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCCCcEEEEECCCCEEEECCEEEECcCCCCCccc
Confidence                 00 01123677788888888999999998 6888886543 344432 33 46999999999999988653

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=98.90  E-value=1.6e-08  Score=84.79  Aligned_cols=120  Identities=28%  Similarity=0.385  Sum_probs=69.9

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecC----CCcc------cCCC--CCC---CC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTT----SDVE------NFPG--FPQ---GI  117 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~----~~~~------~~~~--~~~---~~  117 (382)
                      +..++||+||||||+|++||+.|++.|++|.++|+...-  ....||.+...    ....      ..+.  ..+   -.
T Consensus        14 ~~~~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~   93 (230)
T PF01946_consen   14 DYLEYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVA   93 (230)
T ss_dssp             HHTEESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES
T ss_pred             hhccCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEE
Confidence            446799999999999999999999999999999963211  11222222110    0000      0000  000   13


Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEE-EEE------------CCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFK-VFT------------DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~-v~~------------~~~~~~~d~lvlA~G~~~  174 (382)
                      ...++...+...+-+.|.++++. .|+++-..+ +++. +..            |--.++++.||=|||...
T Consensus        94 d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda  165 (230)
T PF01946_consen   94 DSVEFTSTLASKAIDAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA  165 (230)
T ss_dssp             -HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred             cHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence            55677777777777799999988 688875554 4322 111            334799999999999854

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=98.90  E-value=1.3e-08  Score=96.45  Aligned_cols=117  Identities=19%  Similarity=0.183  Sum_probs=79.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC----Ccceec-------------------------------C
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP----GGQLTT-------------------------------T  104 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~----gg~~~~-------------------------------~  104 (382)
                      ||+|||||++|+++|..|++.|++|+|+|+........    +.....                               .
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~   80 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPAEAAATPGFDNRVSALSAASIRLLEKLGVWDKIEPDRAQPIRDIHVSD   80 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCccccCCCCCCcceeecCHHHHHHHHHCCchhhhhhhcCCCceEEEEEe
Confidence            79999999999999999999999999999753211110    000000                               0


Q ss_pred             CC---cccCCC-------CCCCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccC
Q 016820          105 SD---VENFPG-------FPQGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATG  171 (382)
Q Consensus       105 ~~---~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G  171 (382)
                      ..   ...++.       ....+...++.+.+.+.+.+.+ ++++.+ +|++++.+++.+.+... +.++.+|.||.|.|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vi~adG  160 (385)
T TIGR01988        81 GGSFGALHFDADEIGLEALGYVVENRVLQQALWERLQEYPNVTLLCPARVVELPRHSDHVELTLDDGQQLRARLLVGADG  160 (385)
T ss_pred             CCCCceEEechhhcCCCccEEEEEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCeeEEEECCCCEEEeeEEEEeCC
Confidence            00   000100       0011345677788888888887 998888 79999888777777654 45699999999999


Q ss_pred             CCCcC
Q 016820          172 AVAKK  176 (382)
Q Consensus       172 ~~~~~  176 (382)
                      .++..
T Consensus       161 ~~S~v  165 (385)
T TIGR01988       161 ANSKV  165 (385)
T ss_pred             CCCHH
Confidence            87643

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.90  E-value=2.8e-08  Score=96.50  Aligned_cols=130  Identities=18%  Similarity=0.077  Sum_probs=87.9

Q ss_pred             ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceec
Q 016820           27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +++|+.+..+..........+..... ....+.+++|||||+.|+++|..+..+   |.+|+|+++.             
T Consensus       157 IATGs~p~~p~i~G~~~~~~~~~~~~-~~~~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~-------------  222 (486)
T TIGR01423       157 LATGSWPQMLGIPGIEHCISSNEAFY-LDEPPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRN-------------  222 (486)
T ss_pred             EecCCCCCCCCCCChhheechhhhhc-cccCCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecC-------------
Confidence            56888765443332221122221111 223457899999999999999877665   9999999931             


Q ss_pred             CCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          104 TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                             +.+ .....+++.+.+.+.+++.|++++.+ .+.+++.+++. ..+.. ++.++.+|.+++|+|.+|+...
T Consensus       223 -------~~i-l~~~d~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn~~~  292 (486)
T TIGR01423       223 -------NMI-LRGFDSTLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPRTQT  292 (486)
T ss_pred             -------Ccc-ccccCHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcCccc
Confidence                   000 01134678888888899999999998 68888765332 34443 4567999999999999998753

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK06126 hypothetical protein; Provisional

Probab=98.90  E-value=2.8e-08  Score=98.64  Aligned_cols=122  Identities=20%  Similarity=0.243  Sum_probs=78.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc---------------------------------ee
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ---------------------------------LT  102 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~---------------------------------~~  102 (382)
                      +..+||+|||||++|+++|..|++.|++|+|||+.........+.                                 +.
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~   84 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYF   84 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEE
Confidence            456899999999999999999999999999999743211111100                                 00


Q ss_pred             c--CC-Cccc--CCC-------------------CCCCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE
Q 016820          103 T--TS-DVEN--FPG-------------------FPQGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT  156 (382)
Q Consensus       103 ~--~~-~~~~--~~~-------------------~~~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~  156 (382)
                      .  .. ....  ++.                   ....+....+.+.+.+.+.+. +++++.+ ++++++.+++.+.+..
T Consensus        85 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~  164 (545)
T PRK06126         85 TRLTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADGVTATV  164 (545)
T ss_pred             ecCCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCeEEEEE
Confidence            0  00 0000  000                   001223345666777777654 7999988 7999988777655432


Q ss_pred             ----CC--eEEEcCEEEEccCCCCcCC
Q 016820          157 ----DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       157 ----~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                          ++  .++++|+||.|+|.++..-
T Consensus       165 ~~~~~g~~~~i~ad~vVgADG~~S~VR  191 (545)
T PRK06126        165 EDLDGGESLTIRADYLVGCDGARSAVR  191 (545)
T ss_pred             EECCCCcEEEEEEEEEEecCCcchHHH
Confidence                23  2589999999999987544

>PRK06185 hypothetical protein; Provisional

Probab=98.90  E-value=2.4e-08  Score=95.43  Aligned_cols=121  Identities=21%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC-CCCCccee--------------c----------------C
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-IAPGGQLT--------------T----------------T  104 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~gg~~~--------------~----------------~  104 (382)
                      ...+||+|||||++|+++|..|++.|++|+|||+..... ...+..+.              .                .
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~   83 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIG   83 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEEC
Confidence            456899999999999999999999999999999743211 11111100              0                0


Q ss_pred             CC-c--ccCCCC----C--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcE---EEEE-CC-eEEEcCEEEE
Q 016820          105 SD-V--ENFPGF----P--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPF---KVFT-DS-KSVLADTVIV  168 (382)
Q Consensus       105 ~~-~--~~~~~~----~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~---~v~~-~~-~~~~~d~lvl  168 (382)
                      .. .  ..+...    +  ..+...++.+.+.+.+.+. +++++.+ ++.++..+++.+   .+.. ++ .++++|.||.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~  163 (407)
T PRK06185         84 GRTVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVG  163 (407)
T ss_pred             CeEEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEE
Confidence            00 0  000000    0  1123456777777777664 8999888 788887766654   3333 33 3699999999


Q ss_pred             ccCCCCcC
Q 016820          169 ATGAVAKK  176 (382)
Q Consensus       169 A~G~~~~~  176 (382)
                      |+|..+..
T Consensus       164 AdG~~S~v  171 (407)
T PRK06185        164 ADGRHSRV  171 (407)
T ss_pred             CCCCchHH
Confidence            99997643

>PRK08163 salicylate hydroxylase; Provisional

Probab=98.90  E-value=1.7e-08  Score=96.18  Aligned_cols=118  Identities=22%  Similarity=0.225  Sum_probs=79.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC----------------------C-Cc-------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT----------------------S-DV-------  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~----------------------~-~~-------  107 (382)
                      +.||+|||||++|+++|..|++.|++|+|+|+...... .|..+...                      . ..       
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~~-~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIGE-IGAGIQLGPNAFSALDALGVGEAARQRAVFTDHLTMMDAVD   82 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccccc-ccceeeeCchHHHHHHHcCChHHHHhhccCCcceEEEeCCC
Confidence            47999999999999999999999999999997432211 11100000                      0 00       


Q ss_pred             ----ccCC---------CCCC-CCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEcc
Q 016820          108 ----ENFP---------GFPQ-GILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVAT  170 (382)
Q Consensus       108 ----~~~~---------~~~~-~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~  170 (382)
                          ..++         +.+. .+...++.+.+.+.+.+.+ ++++.+ ++++++.+++.+.+... +.++.+|.||.|.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~Ad  162 (396)
T PRK08163         83 AEEVVRIPTGQAFRARFGNPYAVIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGDGVTVFDQQGNRWTGDALIGCD  162 (396)
T ss_pred             CCEEEEeccchhHHHhcCCcEEEEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCCceEEEEcCCCEEecCEEEECC
Confidence                0000         0000 1345566777777776664 888888 78999877777777654 4569999999999


Q ss_pred             CCCCcC
Q 016820          171 GAVAKK  176 (382)
Q Consensus       171 G~~~~~  176 (382)
                      |.++..
T Consensus       163 G~~S~~  168 (396)
T PRK08163        163 GVKSVV  168 (396)
T ss_pred             CcChHH
Confidence            997654

>PRK11445 putative oxidoreductase; Provisional

Probab=98.89  E-value=3e-08  Score=92.74  Aligned_cols=117  Identities=20%  Similarity=0.187  Sum_probs=77.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC-----CCCCCcceec-----------C---CCcc----------c
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN-----DIAPGGQLTT-----------T---SDVE----------N  109 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-----~~~~gg~~~~-----------~---~~~~----------~  109 (382)
                      +||+||||||||+++|..|++. ++|+|+|+....     ...+|+.+..           .   ....          .
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~   80 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTID   80 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEec
Confidence            7999999999999999999999 999999975321     1123332110           0   0000          0


Q ss_pred             CC-------CCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcC
Q 016820          110 FP-------GFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKK  176 (382)
Q Consensus       110 ~~-------~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~  176 (382)
                      +.       +.+ ..+.+.++.+.+.+. .+.+++++.+ .+..+..+++.+.+..  ++.  ++++|+||.|+|..+..
T Consensus        81 ~~~~~~~~~~~~~~~i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~a~~vV~AdG~~S~v  159 (351)
T PRK11445         81 LANSLTRNYQRSYINIDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDDGYHVIFRADGWEQHITARYLVGADGANSMV  159 (351)
T ss_pred             ccccchhhcCCCcccccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCCEEEEEEecCCcEEEEEeCEEEECCCCCcHH
Confidence            00       001 124556666666653 4568998888 6888887777776653  332  58999999999997654


Q ss_pred             C
Q 016820          177 L  177 (382)
Q Consensus       177 ~  177 (382)
                      .
T Consensus       160 r  160 (351)
T PRK11445        160 R  160 (351)
T ss_pred             h
Confidence            3

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=98.89  E-value=1.7e-08  Score=96.37  Aligned_cols=120  Identities=17%  Similarity=0.166  Sum_probs=76.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC-C--CCCCc---cee-----------cCCCc-------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN-D--IAPGG---QLT-----------TTSDV-------------  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~-~--~~~gg---~~~-----------~~~~~-------------  107 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|+.... .  ...+.   .+.           .....             
T Consensus         4 ~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~   83 (405)
T PRK08850          4 SVDVAIIGGGMVGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAWQGIEARRAAPYIAMEV   83 (405)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCchhhhhhhhCCcccEEEE
Confidence            579999999999999999999999999999974111 0  00000   000           00000             


Q ss_pred             --------ccCCC----CC---CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEc
Q 016820          108 --------ENFPG----FP---QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVA  169 (382)
Q Consensus       108 --------~~~~~----~~---~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA  169 (382)
                              ..+..    .+   ..+....+.+.+.+.+.+. +++++.+ +|++++.+++.+.+..+ +.++++|.||.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~~~v~~~~g~~~~a~lvIgA  163 (405)
T PRK08850         84 WEQDSFARIEFDAESMAQPDLGHIVENRVIQLALLEQVQKQDNVTLLMPARCQSIAVGESEAWLTLDNGQALTAKLVVGA  163 (405)
T ss_pred             EeCCCCceEEEeccccCCCccEEEEEHHHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCCeEEEEECCCCEEEeCEEEEe
Confidence                    00000    00   0112344555666666554 7998888 79999877777777654 457999999999


Q ss_pred             cCCCCcCC
Q 016820          170 TGAVAKKL  177 (382)
Q Consensus       170 ~G~~~~~~  177 (382)
                      .|..+..-
T Consensus       164 DG~~S~vR  171 (405)
T PRK08850        164 DGANSWLR  171 (405)
T ss_pred             CCCCChhH
Confidence            99976544

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.89  E-value=3.1e-08  Score=98.00  Aligned_cols=121  Identities=20%  Similarity=0.247  Sum_probs=81.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc------------------------------ceecCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG------------------------------QLTTTSD  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg------------------------------~~~~~~~  106 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+.........+                              .+.....
T Consensus         9 ~~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g   88 (538)
T PRK06183          9 HDTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKG   88 (538)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCC
Confidence            4589999999999999999999999999999974321110000                              0000000


Q ss_pred             --cccCC-------CCC--CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC---C--eEEEcCEEEE
Q 016820          107 --VENFP-------GFP--QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD---S--KSVLADTVIV  168 (382)
Q Consensus       107 --~~~~~-------~~~--~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~---~--~~~~~d~lvl  168 (382)
                        ...+.       +++  ..+...++.+.+.+.+.+. +++++.+ ++++++.+++.+++...   +  .++++|+||.
T Consensus        89 ~~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~v~v~~~~~~G~~~~i~ad~vVg  168 (538)
T PRK06183         89 RCLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDGVTVTLTDADGQRETVRARYVVG  168 (538)
T ss_pred             CEEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCeEEEEEEcCCCCEEEEEEEEEEe
Confidence              00011       111  1233456667777777665 8999988 79999888887776552   3  3699999999


Q ss_pred             ccCCCCcCC
Q 016820          169 ATGAVAKKL  177 (382)
Q Consensus       169 A~G~~~~~~  177 (382)
                      |.|.++..-
T Consensus       169 ADG~~S~vR  177 (538)
T PRK06183        169 CDGANSFVR  177 (538)
T ss_pred             cCCCchhHH
Confidence            999987553

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.89  E-value=2.2e-08  Score=94.91  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=75.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC-CCC---Ccc---ee-----------cCCCc------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-IAP---GGQ---LT-----------TTSDV------------  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~---gg~---~~-----------~~~~~------------  107 (382)
                      .+||+|||||++|+++|..|++.|++|+|||+..... ...   +..   +.           .....            
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~~~~~~~~~~~~~~   82 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAWSSIVAMRVCPYKRLE   82 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCchhhhHhhCCccceEE
Confidence            3799999999999999999999999999999643111 001   111   00           00000            


Q ss_pred             --------ccCCCCC-------CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEc
Q 016820          108 --------ENFPGFP-------QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVA  169 (382)
Q Consensus       108 --------~~~~~~~-------~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA  169 (382)
                              ..++...       ..+....+...+.+.+.+. +++++.+ ++++++.+++.+.+... +.++++|.||.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~g~~i~~~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~~~~v~~~~g~~~~~~lvIgA  162 (384)
T PRK08849         83 TWEHPECRTRFHSDELNLDQLGYIVENRLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAEGNRVTLESGAEIEAKWVIGA  162 (384)
T ss_pred             EEeCCCceEEecccccCCCccEEEEEcHHHHHHHHHHHHhCCCeEEECCCceeEEEEcCCeEEEEECCCCEEEeeEEEEe
Confidence                    0000000       0011233444444444443 6888887 79999887777766664 457999999999


Q ss_pred             cCCCCcCCC
Q 016820          170 TGAVAKKLQ  178 (382)
Q Consensus       170 ~G~~~~~~~  178 (382)
                      +|.++..-.
T Consensus       163 DG~~S~vR~  171 (384)
T PRK08849        163 DGANSQVRQ  171 (384)
T ss_pred             cCCCchhHH
Confidence            999875543

>PRK07588 hypothetical protein; Provisional

Probab=98.88  E-value=2e-08  Score=95.53  Aligned_cols=118  Identities=20%  Similarity=0.170  Sum_probs=76.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC------------------------------CCc-
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT------------------------------SDV-  107 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~------------------------------~~~-  107 (382)
                      +||+|||||++|+++|+.|++.|++|+|+|+...... .|..+...                              ... 
T Consensus         1 ~~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~g~~~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~g~   79 (391)
T PRK07588          1 MKVAISGAGIAGPTLAYWLRRYGHEPTLIERAPELRT-GGYMVDFWGVGYEVAKRMGITDQLREAGYQIEHVRSVDPTGR   79 (391)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCceEEEeCCCCccC-CCeEEeccCcHHHHHHHcCCHHHHHhccCCccceEEEcCCCC
Confidence            4799999999999999999999999999997432211 11100000                              000 


Q ss_pred             --ccCC--CC------C-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCC
Q 016820          108 --ENFP--GF------P-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVA  174 (382)
Q Consensus       108 --~~~~--~~------~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~  174 (382)
                        ..++  .+      + ..+...++.+.+.+.+ ..+++++.+ +|++++.+++.+.+..+ +.++.+|.||.|.|.++
T Consensus        80 ~~~~~~~~~~~~~~g~~~~~i~r~~l~~~L~~~~-~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588         80 RKADLNVDSFRRMVGDDFTSLPRGDLAAAIYTAI-DGQVETIFDDSIATIDEHRDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             EEEEecHHHccccCCCceEEEEHHHHHHHHHHhh-hcCeEEEeCCEEeEEEECCCeEEEEECCCCEEEeCEEEECCCCCc
Confidence              0000  00      0 0123345555555543 337899888 79999888887777664 45689999999999987


Q ss_pred             cCCC
Q 016820          175 KKLQ  178 (382)
Q Consensus       175 ~~~~  178 (382)
                      ..-.
T Consensus       159 ~vR~  162 (391)
T PRK07588        159 HVRR  162 (391)
T ss_pred             cchh
Confidence            6543

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=98.87  E-value=3.4e-08  Score=93.89  Aligned_cols=56  Identities=18%  Similarity=0.096  Sum_probs=46.4

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+.+.+.+.+.+.|++++.+ +|..++.+++.+.+.++++++.+|.||+|+|.++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCEEEeCEEEECCCcch
Confidence            4566677777778889999888 7999988777777877777899999999999865

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=98.87  E-value=5.7e-09  Score=103.79  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=65.7

Q ss_pred             CCCcEEEEcCCc--hHHHHHHHHhhcCCEEEEEEeCCCCc--------------------chHHHHHHhccCCCcEEEcC
Q 016820          204 RDKPLAVIGGGD--SAMEEANFLTKYGSKVYIIHRRDSFR--------------------ASKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       204 ~~~~v~VvG~G~--~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~~~~~~~~l~~~gv~~~~~  261 (382)
                      ..+++.|+|++.  .+.+++..+...+.+++++.+...+.                    ....+ .+.+++.|++++.+
T Consensus       156 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~~~G~~l~~~L-~~~~~~~Gv~i~~~  234 (574)
T PRK12842        156 PLKTITFIGMMFNSSNADLKHFFNATRSLTSFIYVAKRLATHLKDLALYRRGTQVTSGNALAARL-AKSALDLGIPILTG  234 (574)
T ss_pred             CcccccccceecccchHHHHHHHhhccchhHHHHHHHHHHhhHHHHhhccCCcccccHHHHHHHH-HHHHHhCCCEEEeC
Confidence            357788999988  78899998888877766543322111                    11222 23456789999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecC-eEEEeeCCCC
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS-GLFFAIGHEP  305 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D-~vi~~~G~~p  305 (382)
                      +.+.++..+++  .+.+|.+.+.  +....+.++ .||+|+|.-+
T Consensus       235 ~~v~~l~~~~g--~V~GV~~~~~--~~~~~i~a~k~VVlAtGg~~  275 (574)
T PRK12842        235 TPARELLTEGG--RVVGARVIDA--GGERRITARRGVVLACGGFS  275 (574)
T ss_pred             CEEEEEEeeCC--EEEEEEEEcC--CceEEEEeCCEEEEcCCCcc
Confidence            99999987643  3666776541  223457786 7999998766

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.86  E-value=2.8e-08  Score=93.64  Aligned_cols=116  Identities=19%  Similarity=0.208  Sum_probs=79.1

Q ss_pred             cEEEECCcHHHHHHHHHH--HHcCCCeEEEecccCC---CCCCCcceecCCC------cccCC--------------CCC
Q 016820           60 KVCIIGSGPAAHTAAIYA--ARAELKPILFEGWMAN---DIAPGGQLTTTSD------VENFP--------------GFP  114 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l--~~~g~~v~lie~~~~~---~~~~gg~~~~~~~------~~~~~--------------~~~  114 (382)
                      ||+|||||+||+++|..|  ++.|.+|+|||+....   .....+-+.....      .+.++              .++
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            899999999999999999  7779999999964222   1111111110000      00110              111


Q ss_pred             C-CCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCc
Q 016820          115 Q-GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       115 ~-~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~  175 (382)
                      . .+....+.+++.+.+...++.++...|.+|+..++.+.+.+ ++.+++++.||-|.|..+.
T Consensus        81 Y~~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~~~~v~~~~g~~i~a~~VvDa~g~~~~  143 (374)
T PF05834_consen   81 YCMIDRADFYEFLLERAAAGGVIRLNARVTSIEETGDGVLVVLADGRTIRARVVVDARGPSSP  143 (374)
T ss_pred             eEEEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCceEEEEECCCCEEEeeEEEECCCcccc
Confidence            1 35678888888888886677777778999998887665555 4457999999999996554

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.85  E-value=5.9e-08  Score=96.70  Aligned_cols=51  Identities=22%  Similarity=0.240  Sum_probs=40.9

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCchh-------hHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKKY-------RQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~~-------~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+|+.|++||+|+|++...       .....+...|+.|+.++++++.+
T Consensus       370 ~gG~~~d~-~~~t~i~gL~a~Ge~~~~~hg~nrl~~~sl~~~~v~g~~Ag~~aa~~~~~  427 (603)
T TIGR01811       370 MGGLWVDY-DQMTNIPGLFAAGECDFSQHGANRLGANSLLSAIADGYFALPFTIPNYLG  427 (603)
T ss_pred             CCCeeECC-CCcccCCCEEECcccccCcCCCccchhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            48899998 77899999999999964221       35668889999999999887643

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>PRK07045 putative monooxygenase; Reviewed

Probab=98.85  E-value=5.9e-08  Score=92.16  Aligned_cols=121  Identities=17%  Similarity=0.083  Sum_probs=77.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-----------------------------c--CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-----------------------------T--TS  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-----------------------------~--~~  105 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|+........++...                             .  ..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g   83 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDK   83 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCC
Confidence            4579999999999999999999999999999975322211111000                             0  00


Q ss_pred             Cc---ccCCCCC-C----CCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCc--EEEEE-CCeEEEcCEEEEccCC
Q 016820          106 DV---ENFPGFP-Q----GILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRP--FKVFT-DSKSVLADTVIVATGA  172 (382)
Q Consensus       106 ~~---~~~~~~~-~----~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~--~~v~~-~~~~~~~d~lvlA~G~  172 (382)
                      ..   ..+.... .    .+...++.+.+.+.+.+ .+++++.+ +++++..+++.  +.+.. ++.++.+|.||.|.|.
T Consensus        84 ~~~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~  163 (388)
T PRK07045         84 ELIASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGA  163 (388)
T ss_pred             cEEEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCC
Confidence            00   0010000 0    12344566666666644 47999888 78888876544  24544 4457999999999999


Q ss_pred             CCcCC
Q 016820          173 VAKKL  177 (382)
Q Consensus       173 ~~~~~  177 (382)
                      ++..-
T Consensus       164 ~S~vR  168 (388)
T PRK07045        164 RSMIR  168 (388)
T ss_pred             ChHHH
Confidence            76443

>TIGR03452 mycothione_red mycothione reductase

Probab=98.85  E-value=3.7e-08  Score=95.23  Aligned_cols=100  Identities=22%  Similarity=0.209  Sum_probs=75.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+++++.    ..             +    .....+++.+.+.+.. +.+++
T Consensus       168 ~~k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~----~~-------------l----l~~~d~~~~~~l~~~~-~~gI~  225 (452)
T TIGR03452       168 LPESLVIVGGGYIAAEFAHVFSALGTRVTIVNRS----TK-------------L----LRHLDEDISDRFTEIA-KKKWD  225 (452)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCCCcEEEEEcc----Cc-------------c----ccccCHHHHHHHHHHH-hcCCE
Confidence            4579999999999999999999999999999941    00             0    0112345666666544 45899


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++..++.+++.+.+.. ++.++.+|.|++|+|.+|+...
T Consensus       226 i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn~~~  269 (452)
T TIGR03452       226 IRLGRNVTAVEQDGDGVTLTLDDGSTVTADVLLVATGRVPNGDL  269 (452)
T ss_pred             EEeCCEEEEEEEcCCeEEEEEcCCCEEEcCEEEEeeccCcCCCC
Confidence            9988 7899987666665554 3456999999999999998754

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=98.84  E-value=4.7e-08  Score=92.54  Aligned_cols=56  Identities=16%  Similarity=0.169  Sum_probs=46.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+.|++++.+ +|.++..+++.+.+.++++++.+|+||+|+|.+.
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCCEEEeCEEEEecCcch
Confidence            3466677777778889999888 6999988777787877777899999999999863

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=98.84  E-value=4.2e-08  Score=92.72  Aligned_cols=100  Identities=15%  Similarity=0.260  Sum_probs=78.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||||+.|+++|..|.+.|.+|+++++.    ..                +......+++.+.+++.+++.|+++
T Consensus       141 ~~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~----~~----------------~l~~~~~~~~~~~l~~~l~~~gV~i  200 (377)
T PRK04965        141 AQRVLVVGGGLIGTELAMDLCRAGKAVTLVDNA----AS----------------LLASLMPPEVSSRLQHRLTEMGVHL  200 (377)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC----Cc----------------ccchhCCHHHHHHHHHHHHhCCCEE
Confidence            468999999999999999999999999999941    00                0011123567778888888999999


Q ss_pred             EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++.+++.+.+.. ++.++.+|.||+|+|.+|+..
T Consensus       201 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~~~  242 (377)
T PRK04965        201 LLKSQLQGLEKTDSGIRATLDSGRSIEVDAVIAAAGLRPNTA  242 (377)
T ss_pred             EECCeEEEEEccCCEEEEEEcCCcEEECCEEEECcCCCcchH
Confidence            987 7889987766666554 455799999999999998653

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.84  E-value=4.4e-08  Score=94.74  Aligned_cols=100  Identities=21%  Similarity=0.183  Sum_probs=79.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+|+|||||++|+++|..|++.|.+|+++++.    .    .+        ++    ....+++.+.+.+.+++.|+++
T Consensus       149 ~~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~----~----~~--------l~----~~~~~~~~~~l~~~l~~~gI~v  208 (444)
T PRK09564        149 IKNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLE----D----RI--------LP----DSFDKEITDVMEEELRENGVEL  208 (444)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCcEEEEeCC----c----cc--------Cc----hhcCHHHHHHHHHHHHHCCCEE
Confidence            478999999999999999999999999999931    0    00        00    1124678888889999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ ++.+++.+++...+.++++++.+|.+|+|+|.+|+..
T Consensus       209 ~~~~~v~~i~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~~~  249 (444)
T PRK09564        209 HLNEFVKSLIGEDKVEGVVTDKGEYEADVVIVATGVKPNTE  249 (444)
T ss_pred             EcCCEEEEEecCCcEEEEEeCCCEEEcCEEEECcCCCcCHH
Confidence            988 6888876554445566777899999999999998754

>PRK06753 hypothetical protein; Provisional

Probab=98.84  E-value=4.5e-08  Score=92.43  Aligned_cols=115  Identities=21%  Similarity=0.224  Sum_probs=74.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec-------------------------------CCC-
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT-------------------------------TSD-  106 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~-------------------------------~~~-  106 (382)
                      ++|+|||||++|+++|+.|++.|++|+|+|+....... |..+..                               ... 
T Consensus         1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~-g~gi~l~~~~~~~L~~~gl~~~~~~~~~~~~~~~~~~~~g~   79 (373)
T PRK06753          1 MKIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVKEV-GAGIGIGDNVIKKLGNHDLAKGIKNAGQILSTMNLLDDKGT   79 (373)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccccc-ccceeeChHHHHHHHhcChHHHHHhcCCcccceeEEcCCCC
Confidence            37999999999999999999999999999974322111 110000                               000 


Q ss_pred             c-ccCC----CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcC
Q 016820          107 V-ENFP----GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       107 ~-~~~~----~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~  176 (382)
                      . ...+    .....+....+.+.+.+.+.  +.+++.+ ++++++.+++.+.+..+ +.++.+|.||.|.|.++..
T Consensus        80 ~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~~~~vigadG~~S~v  154 (373)
T PRK06753         80 LLNKVKLKSNTLNVTLHRQTLIDIIKSYVK--EDAIFTGKEVTKIENETDKVTIHFADGESEAFDLCIGADGIHSKV  154 (373)
T ss_pred             EEeecccccCCccccccHHHHHHHHHHhCC--CceEEECCEEEEEEecCCcEEEEECCCCEEecCEEEECCCcchHH
Confidence            0 0000    00012344566666655544  3567777 79999888777777664 4569999999999987644

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.83  E-value=7.3e-08  Score=95.61  Aligned_cols=120  Identities=17%  Similarity=0.193  Sum_probs=79.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc---------------------------e-----ec
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ---------------------------L-----TT  103 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~---------------------------~-----~~  103 (382)
                      +..+||+|||||++|+++|..|++.|++|+|||+.....  .++.                           +     ..
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~--~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~   98 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLS--TGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFL   98 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC--CCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEe
Confidence            356899999999999999999999999999999743211  1110                           0     00


Q ss_pred             C-CCcccCC-------CCCC--CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE---CCe-EEEcCEEE
Q 016820          104 T-SDVENFP-------GFPQ--GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT---DSK-SVLADTVI  167 (382)
Q Consensus       104 ~-~~~~~~~-------~~~~--~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~---~~~-~~~~d~lv  167 (382)
                      . .....+.       .++.  .+...++.+.+.+.+.+. +++++.+ ++++++.+++.+.+..   ++. ++++|+||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~i~ad~vV  178 (547)
T PRK08132         99 RDEEVYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDGVTLTVETPDGPYTLEADWVI  178 (547)
T ss_pred             CCCeEEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCEEEEEEECCCCcEEEEeCEEE
Confidence            0 0000000       0010  123456667777777765 6899888 7989988777665543   232 58999999


Q ss_pred             EccCCCCcCC
Q 016820          168 VATGAVAKKL  177 (382)
Q Consensus       168 lA~G~~~~~~  177 (382)
                      .|.|.++..-
T Consensus       179 gADG~~S~vR  188 (547)
T PRK08132        179 ACDGARSPLR  188 (547)
T ss_pred             ECCCCCcHHH
Confidence            9999987543

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=98.82  E-value=3.4e-07  Score=90.95  Aligned_cols=44  Identities=23%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             CCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          328 TTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       328 ~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      ..+|+.|++||+|||+.. ..+++..+..+|..++.++++++...
T Consensus       401 ~~~T~i~gLyA~Ge~~~~~~h~l~~nsl~eg~~ag~~a~~~~~~~  445 (614)
T TIGR02061       401 NRMTTVEGLFTCGDGVGASPHKFSSGSFTEGRIAAKAAVRWILDH  445 (614)
T ss_pred             CCccccCCEEeceecccCcchhhHHhHHHHHHHHHHHHHHHHHhC
Confidence            457899999999999752 35677788888999999999988643

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.82  E-value=8.4e-08  Score=93.06  Aligned_cols=118  Identities=24%  Similarity=0.332  Sum_probs=78.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceec--CCC---------------------------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTT--TSD---------------------------  106 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~--~~~---------------------------  106 (382)
                      +||+|||+|.||+.||..+++.|.+|+|+||......   ..||....  ..+                           
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae~G~~V~liek~~~~~~s~~a~ggi~~~~~~~ds~e~~~~d~~~~~~~~~d~~~v~~~~~   81 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAKKGFDVTIIGPGIKKSNSYLAQAGIAFPILEGDSIRAHVLDTIRAGKYINDEEVVWNVIS   81 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCCCCCCCcHHHcCCcccccCCCCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            7999999999999999999999999999997422110   00110000  000                           


Q ss_pred             -------c-----ccCC------C--CC-----CCCChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcE-EEEECCeE
Q 016820          107 -------V-----ENFP------G--FP-----QGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF-KVFTDSKS  160 (382)
Q Consensus       107 -------~-----~~~~------~--~~-----~~~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~-~v~~~~~~  160 (382)
                             +     ..|.      +  ++     .......+.+.+.+.+.+.|++++.+.++.+..+++.+ .+..++..
T Consensus        82 ~~~~~i~~L~~~Gv~f~~~~~~~g~~~~r~~~~~~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~g~v~Gv~~~g~~  161 (466)
T PRK08401         82 KSSEAYDFLTSLGLEFEGNELEGGHSFPRVFTIKNETGKHIIKILYKHARELGVNFIRGFAEELAIKNGKAYGVFLDGEL  161 (466)
T ss_pred             HHHHHHHHHHHcCCCcccCCCcCCccCCeEEECCCCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeCCEEEEEEECCEE
Confidence                   0     0000      0  11     01245678888888888999999877777776555444 34456667


Q ss_pred             EEcCEEEEccCCCCcC
Q 016820          161 VLADTVIVATGAVAKK  176 (382)
Q Consensus       161 ~~~d~lvlA~G~~~~~  176 (382)
                      +.++.||+|||..+..
T Consensus       162 i~a~~VVLATGG~~~~  177 (466)
T PRK08401        162 LKFDATVIATGGFSGL  177 (466)
T ss_pred             EEeCeEEECCCcCcCC
Confidence            9999999999996543

>PRK06996 hypothetical protein; Provisional

Probab=98.82  E-value=4.6e-08  Score=93.16  Aligned_cols=118  Identities=15%  Similarity=0.191  Sum_probs=79.4

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcC----CCeEEEecccCCCCCCC--c-c--------------ee----------c
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAE----LKPILFEGWMANDIAPG--G-Q--------------LT----------T  103 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g----~~v~lie~~~~~~~~~g--g-~--------------~~----------~  103 (382)
                      ....+||+|||||++|+++|..|++.|    .+|+|+|+.........  + .              |.          .
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~   87 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHV   87 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEE
Confidence            345689999999999999999999987    47999997421111100  0 0              00          0


Q ss_pred             C--CCc-------cc--CCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC----eEEEcCEEE
Q 016820          104 T--SDV-------EN--FPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS----KSVLADTVI  167 (382)
Q Consensus       104 ~--~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~----~~~~~d~lv  167 (382)
                      .  ...       ..  .+.....+...++.+.|.+.+.+.+++++.+ ++++++.+.+.+++...+    .++++|+||
T Consensus        88 ~~~~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v~v~~~~~~g~~~i~a~lvI  167 (398)
T PRK06996         88 SQRGHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADGVTLALGTPQGARTLRARIAV  167 (398)
T ss_pred             ecCCCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeEEEEECCCCcceEEeeeEEE
Confidence            0  000       00  0000012345678888888888889999888 688888777778776542    479999999


Q ss_pred             EccCC
Q 016820          168 VATGA  172 (382)
Q Consensus       168 lA~G~  172 (382)
                      .|.|.
T Consensus       168 gADG~  172 (398)
T PRK06996        168 QAEGG  172 (398)
T ss_pred             ECCCC
Confidence            99995

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=98.81  E-value=6.6e-08  Score=91.38  Aligned_cols=55  Identities=15%  Similarity=0.173  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ..+...+.+.+.+.|++++.+ +|+++..+++.+.+.++++.+.+|.||+|+|.+.
T Consensus       149 ~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~  204 (376)
T PRK11259        149 ELAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGTYEAKKLVVSAGAWV  204 (376)
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCEEEeeEEEEecCcch
Confidence            455555666677789999887 6999988777788888777899999999999864

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.81  E-value=5.6e-08  Score=97.01  Aligned_cols=101  Identities=15%  Similarity=0.089  Sum_probs=75.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH-HHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS-LRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi  135 (382)
                      .+.+|+|||||+.|+++|..|.+.|.+|+|||+.    ..             +    ......++.+++.+.+ ++.||
T Consensus       311 lpk~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~----~~-------------l----l~~~d~eis~~l~~~ll~~~GV  369 (659)
T PTZ00153        311 LQNYMGIVGMGIIGLEFMDIYTALGSEVVSFEYS----PQ-------------L----LPLLDADVAKYFERVFLKSKPV  369 (659)
T ss_pred             cCCceEEECCCHHHHHHHHHHHhCCCeEEEEecc----Cc-------------c----cccCCHHHHHHHHHHHhhcCCc
Confidence            4578999999999999999999999999999931    00             0    0113456777777754 57899


Q ss_pred             EEEEe-eEEEEEecCCc--EEEEEC-------C---------eEEEcCEEEEccCCCCcCCC
Q 016820          136 QIFTE-TVSKVDFKSRP--FKVFTD-------S---------KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~--~~v~~~-------~---------~~~~~d~lvlA~G~~~~~~~  178 (382)
                      +++.+ .|..|+.+++.  +.+...       +         .++.+|.|++|+|.+|+...
T Consensus       370 ~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~  431 (659)
T PTZ00153        370 RVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNN  431 (659)
T ss_pred             EEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCcc
Confidence            99999 68889765432  444321       1         26999999999999998764

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=98.81  E-value=9.1e-08  Score=92.83  Aligned_cols=55  Identities=27%  Similarity=0.340  Sum_probs=43.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +..+...+.+.+.+.|++++.+ .|++++. ++.+.+.++++++.+|+||+|+|.+.
T Consensus       182 P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~~~~~v~t~~g~v~A~~VV~Atga~s  237 (460)
T TIGR03329       182 PGLLVRGLRRVALELGVEIHENTPMTGLEE-GQPAVVRTPDGQVTADKVVLALNAWM  237 (460)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEee-CCceEEEeCCcEEECCEEEEcccccc
Confidence            4455666777778889999888 6888875 44567777888899999999999863

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PLN02985 squalene monooxygenase

Probab=98.81  E-value=8.2e-08  Score=93.89  Aligned_cols=123  Identities=19%  Similarity=0.242  Sum_probs=78.2

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCccee------------------------------c
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLT------------------------------T  103 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~------------------------------~  103 (382)
                      ....+||+|||||++|+++|..|++.|++|+|+|+....... .|..+.                              .
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~~g~~L~p~g~~~L~~LGl~d~l~~~~~~~~~~~~v~~  119 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLREPERMMGEFMQPGGRFMLSKLGLEDCLEGIDAQKATGMAVYK  119 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCCCCccccccccCchHHHHHHHcCCcchhhhccCcccccEEEEE
Confidence            345689999999999999999999999999999974321111 110000                              0


Q ss_pred             CCC--cccCCC----CC-----CCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCc---EEEEE-CCe--EEEcCE
Q 016820          104 TSD--VENFPG----FP-----QGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRP---FKVFT-DSK--SVLADT  165 (382)
Q Consensus       104 ~~~--~~~~~~----~~-----~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~---~~v~~-~~~--~~~~d~  165 (382)
                      ...  ...++.    .+     ..+...++.+.+.+.+.+. ++++..++++++..+++.   +++.. ++.  ++.+|.
T Consensus       120 ~g~~~~~~~~~~~~~~~~~~~g~~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~~~v~gV~~~~~dG~~~~~~AdL  199 (514)
T PLN02985        120 DGKEAVAPFPVDNNNFPYEPSARSFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEKGVIKGVTYKNSAGEETTALAPL  199 (514)
T ss_pred             CCEEEEEeCCCCCcCCCcccceeeeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcCCEEEEEEEEcCCCCEEEEECCE
Confidence            000  001110    00     1234567778888877766 699888888777655543   33332 233  367999


Q ss_pred             EEEccCCCCcCC
Q 016820          166 VIVATGAVAKKL  177 (382)
Q Consensus       166 lvlA~G~~~~~~  177 (382)
                      ||.|.|..+...
T Consensus       200 VVgADG~~S~vR  211 (514)
T PLN02985        200 TVVCDGCYSNLR  211 (514)
T ss_pred             EEECCCCchHHH
Confidence            999999977554

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.80  E-value=1e-07  Score=78.14  Aligned_cols=108  Identities=24%  Similarity=0.322  Sum_probs=67.7

Q ss_pred             EEECCcHHHHHHHHHHHHc-----CCCeEEEecccCCCCCCCcceecC----------C-CcccCCCC------------
Q 016820           62 CIIGSGPAAHTAAIYAARA-----ELKPILFEGWMANDIAPGGQLTTT----------S-DVENFPGF------------  113 (382)
Q Consensus        62 vIIGaG~aGl~~A~~l~~~-----g~~v~lie~~~~~~~~~gg~~~~~----------~-~~~~~~~~------------  113 (382)
                      +|||+|++|++++.+|.++     ..+|+|+|+...   ..|+.+...          . .+..++.-            
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~---G~G~~~~~~~~~~~llN~~a~~~s~~~~~~~~~f~~Wl~~~   77 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF---GAGGAYRPDQPPSHLLNTPADQMSLFPDDPGDDFVDWLRAN   77 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc---cccccCCCCCChHHhhcccccccccccccCCCCHHHHHHhc
Confidence            5999999999999999988     589999996211   112221111          0 00001100            


Q ss_pred             ----------CCCCChHHHHHHHHHHHHH----c--C--cEEEEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCC
Q 016820          114 ----------PQGILGGDLMDRCRNQSLR----F--G--TQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGA  172 (382)
Q Consensus       114 ----------~~~~~~~~~~~~~~~~~~~----~--g--i~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~  172 (382)
                                ..+..+..+-+|+++.+++    .  +  +.++..+|++|+..++.+.+.+ ++..+.+|+||+|+|.
T Consensus        78 ~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~~~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen   78 GADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRRDDDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             CcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEEcCCcEEEEECCCCEEEeCEEEECCCC
Confidence                      1123334444555554433    2  4  4456668999999988877655 5567999999999995

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=98.79  E-value=5.6e-08  Score=92.46  Aligned_cols=99  Identities=17%  Similarity=0.151  Sum_probs=76.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+|+|+.    ..                .......+++.+++.+.+++.|+++
T Consensus       144 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~----~~----------------~l~~~~~~~~~~~l~~~l~~~GV~i  203 (396)
T PRK09754        144 ERSVVIVGAGTIGLELAASATQRRCKVTVIELA----AT----------------VMGRNAPPPVQRYLLQRHQQAGVRI  203 (396)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC----Cc----------------chhhhcCHHHHHHHHHHHHHCCCEE
Confidence            468999999999999999999999999999931    00                0001234567778888888999999


Q ss_pred             EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++. ++.+.+.+ ++.++.+|.||+|+|.+|+..
T Consensus       204 ~~~~~V~~i~~-~~~~~v~l~~g~~i~aD~Vv~a~G~~pn~~  244 (396)
T PRK09754        204 LLNNAIEHVVD-GEKVELTLQSGETLQADVVIYGIGISANDQ  244 (396)
T ss_pred             EeCCeeEEEEc-CCEEEEEECCCCEEECCEEEECCCCChhhH
Confidence            988 6888875 33444444 456799999999999998753

>PLN02661 Putative thiazole synthesis

Probab=98.78  E-value=1.2e-07  Score=86.50  Aligned_cols=118  Identities=21%  Similarity=0.268  Sum_probs=69.8

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCC--CCCCCcceecCC-------C-cccCCCCCC--------
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMAN--DIAPGGQLTTTS-------D-VENFPGFPQ--------  115 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~--~~~~gg~~~~~~-------~-~~~~~~~~~--------  115 (382)
                      +..++||+|||||++|+.+|+.|++. |++|+|+|+....  +...|+......       . ...+ +.+.        
T Consensus        89 ~~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeEl-GV~fd~~dgy~v  167 (357)
T PLN02661         89 TYADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDEL-GVPYDEQENYVV  167 (357)
T ss_pred             hcccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHc-CCCcccCCCeeE
Confidence            34578999999999999999999986 8999999963211  111121111000       0 0000 1110        


Q ss_pred             CCChHHHHHHHHHHHH-HcCcEEEEe-eEEEEEecCCcE-EEEE---------CC------eEEEcCEEEEccCCC
Q 016820          116 GILGGDLMDRCRNQSL-RFGTQIFTE-TVSKVDFKSRPF-KVFT---------DS------KSVLADTVIVATGAV  173 (382)
Q Consensus       116 ~~~~~~~~~~~~~~~~-~~gi~~~~~-~v~~i~~~~~~~-~v~~---------~~------~~~~~d~lvlA~G~~  173 (382)
                      .....++...+.+.+. +.+++++.+ .+.++..+++.+ -+..         +.      ..+++++||+|||..
T Consensus       168 v~ha~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~  243 (357)
T PLN02661        168 IKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHD  243 (357)
T ss_pred             ecchHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCC
Confidence            1122344455555444 468999888 677776655432 1110         11      258999999999954

>PLN02546 glutathione reductase

Probab=98.76  E-value=1.1e-07  Score=93.70  Aligned_cols=130  Identities=17%  Similarity=0.102  Sum_probs=87.8

Q ss_pred             ccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820           27 IVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD  106 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~  106 (382)
                      +++|+.+..+................ ......+|+|||||+.|+++|..|.+.|.+|+|+++.    .    .      
T Consensus       222 IATGs~p~~P~IpG~~~v~~~~~~l~-~~~~~k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~----~----~------  286 (558)
T PLN02546        222 IAVGGRPFIPDIPGIEHAIDSDAALD-LPSKPEKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQ----K----K------  286 (558)
T ss_pred             EeCCCCCCCCCCCChhhccCHHHHHh-ccccCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEec----c----c------
Confidence            66888765443222211111111111 1124579999999999999999999999999999931    0    0      


Q ss_pred             cccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcEEEEECCeEEE-cCEEEEccCCCCcCCC
Q 016820          107 VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPFKVFTDSKSVL-ADTVIVATGAVAKKLQ  178 (382)
Q Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~~v~~~~~~~~-~d~lvlA~G~~~~~~~  178 (382)
                        -+     ....+++.+.+++.+++.||+++.+ .+..+... ++.+.+.++++++. +|.||+|+|.+|+...
T Consensus       287 --il-----~~~d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pnt~~  354 (558)
T PLN02546        287 --VL-----RGFDEEVRDFVAEQMSLRGIEFHTEESPQAIIKSADGSLSLKTNKGTVEGFSHVMFATGRKPNTKN  354 (558)
T ss_pred             --cc-----cccCHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCCCEEEEEECCeEEEecCEEEEeeccccCCCc
Confidence              00     1134677788888889999999988 68888754 33355555555544 8999999999998753

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.76  E-value=3.4e-07  Score=90.38  Aligned_cols=50  Identities=20%  Similarity=0.186  Sum_probs=39.9

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      .|.+.+|. ..+|+.||+||+|+|+. ..       -.....+...|+.|+++++++..
T Consensus       353 ~GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~  410 (536)
T PRK09077        353 CGGVMVDL-HGRTDLDGLYAIGEVSYTGLHGANRMASNSLLECLVYGRSAAEDILSRLP  410 (536)
T ss_pred             cCCeeECC-CCccccCCEEecccccccccCCCccchhhhHHHHHHHHHHHHHHHHHhhc
Confidence            57899998 67899999999999863 21       13566788999999999988753

>PRK05868 hypothetical protein; Validated

Probab=98.75  E-value=9.6e-08  Score=90.04  Aligned_cols=117  Identities=16%  Similarity=0.143  Sum_probs=73.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec------------------------------CCCcc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT------------------------------TSDVE  108 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~------------------------------~~~~~  108 (382)
                      +||+|||||++|+++|..|++.|++|+|||+..... ..|..+..                              .....
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~-~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~   80 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLR-PGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGN   80 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCC-CCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCC
Confidence            589999999999999999999999999999743221 11110000                              00000


Q ss_pred             ---cCCC---CCC-------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCC
Q 016820          109 ---NFPG---FPQ-------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAV  173 (382)
Q Consensus       109 ---~~~~---~~~-------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~  173 (382)
                         ....   ...       .+...++.+.+.+ ....+++++.+ ++++++.+++.+++.. ++.++++|.||-|.|.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~l~~-~~~~~v~i~~~~~v~~i~~~~~~v~v~~~dg~~~~adlvIgADG~~  159 (372)
T PRK05868         81 ELFRDTESTPTGGPVNSPDIELLRDDLVELLYG-ATQPSVEYLFDDSISTLQDDGDSVRVTFERAAAREFDLVIGADGLH  159 (372)
T ss_pred             EEeecccccccCCCCCCceEEEEHHHHHHHHHH-hccCCcEEEeCCEEEEEEecCCeEEEEECCCCeEEeCEEEECCCCC
Confidence               0000   000       0112344443333 22458889888 7999987777777765 44579999999999997


Q ss_pred             CcCC
Q 016820          174 AKKL  177 (382)
Q Consensus       174 ~~~~  177 (382)
                      +..-
T Consensus       160 S~vR  163 (372)
T PRK05868        160 SNVR  163 (372)
T ss_pred             chHH
Confidence            6543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.75  E-value=1.7e-07  Score=91.85  Aligned_cols=57  Identities=28%  Similarity=0.369  Sum_probs=44.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCch--------hhHHHHHHhhHHHHHHHHHHHHHHccCcc
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKK--------YRQAVTAAGTGCMAALEAEHYLQEIGSQE  375 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~--------~~~~~~a~~~g~~aa~~i~~~l~~~~~~~  375 (382)
                      -|.+++|.....+..|++||+|+|++..        ......+...|+.|+.++++++..+...+
T Consensus       355 mGGi~~~~~~~~t~i~GLfAaGe~~~~~~hGanrlG~nsl~~~~v~G~~Ag~~aa~y~~~~~~~~  419 (562)
T COG1053         355 MGGIPTNTGRVETKIPGLFAAGEAAGVSHHGANRLGGNSLLDLVVFGRIAGEAAAEYAKEKSGSP  419 (562)
T ss_pred             cCCEeecccccccCCCCeEECceecccccCCcccCCccccHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            4778888424466799999999998522        23677899999999999999999877664

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=98.75  E-value=1.9e-07  Score=90.54  Aligned_cols=57  Identities=18%  Similarity=0.182  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHHH----cC--cEEEEe-eEEEEEec-CCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLR----FG--TQIFTE-TVSKVDFK-SRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~----~g--i~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +...+...+.+.+.+    .|  ++++.+ +|++|+.+ ++.|.+.++.+++.+|+||+|+|.+.
T Consensus       209 d~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~S  273 (497)
T PTZ00383        209 DYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGYS  273 (497)
T ss_pred             CHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChhH
Confidence            445677778888888    77  778887 79999887 55678888888999999999999864

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.75  E-value=1.6e-07  Score=89.26  Aligned_cols=120  Identities=16%  Similarity=0.083  Sum_probs=75.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecC------------------------------C
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTT------------------------------S  105 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~------------------------------~  105 (382)
                      .+||+|||||++|+++|+.|++.|++|+|+|+.....  ...+.....+                              .
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g   81 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDG   81 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECC
Confidence            4789999999999999999999999999999754210  1111110000                              0


Q ss_pred             Cc--ccCCCCC--C---CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEe-cCCcEEEEE--CCe--EEEcCEEEEccCC
Q 016820          106 DV--ENFPGFP--Q---GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDF-KSRPFKVFT--DSK--SVLADTVIVATGA  172 (382)
Q Consensus       106 ~~--~~~~~~~--~---~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~-~~~~~~v~~--~~~--~~~~d~lvlA~G~  172 (382)
                      ..  ..++...  .   .....++.+.+.+.+.+.|++++.+ ++++++. +++...+..  ++.  ++++|+||.|.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~~~V~~~~~G~~~~i~ad~vVgADG~  161 (392)
T PRK08243         82 RRHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDRPYVTYEKDGEEHRLDCDFIAGCDGF  161 (392)
T ss_pred             EEEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCceEEEEEcCCeEEEEEeCEEEECCCC
Confidence            00  0011000  0   0123455666666667789999888 6877765 444444433  342  5899999999999


Q ss_pred             CCcCC
Q 016820          173 VAKKL  177 (382)
Q Consensus       173 ~~~~~  177 (382)
                      ++..-
T Consensus       162 ~S~vR  166 (392)
T PRK08243        162 HGVSR  166 (392)
T ss_pred             CCchh
Confidence            77544

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.75  E-value=3.3e-08  Score=84.94  Aligned_cols=104  Identities=23%  Similarity=0.227  Sum_probs=67.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc--------cC--------------------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE--------NF--------------------  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~--------~~--------------------  110 (382)
                      .+|+|||+|++|++||+.|++.|.+|+|+|    ++.-.||++.......        +|                    
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~e----Kg~GvGGRlAtRRl~~g~~DhGAqYfk~~~~~F~~~Ve~~~~~glV   77 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALREAGREVTVFE----KGRGVGGRLATRRLDGGRFDHGAQYFKPRDELFLRAVEALRDDGLV   77 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHhcCcEEEEEE----cCCCcccchheeccCCccccccceeecCCchHHHHHHHHHHhCCce
Confidence            479999999999999999999999999999    4445555543211000        00                    


Q ss_pred             ---------------CCCCC------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe--EEEcCEE
Q 016820          111 ---------------PGFPQ------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK--SVLADTV  166 (382)
Q Consensus       111 ---------------~~~~~------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~--~~~~d~l  166 (382)
                                     +..+.      ......+.+++     ....+++++ +|+.+...++.|++.++++  ...+|.|
T Consensus        78 ~~W~~~~~~~~~~~~~~~~d~~pyvg~pgmsalak~L-----AtdL~V~~~~rVt~v~~~~~~W~l~~~~g~~~~~~d~v  152 (331)
T COG3380          78 DVWTPAVWTFTGDGSPPRGDEDPYVGEPGMSALAKFL-----ATDLTVVLETRVTEVARTDNDWTLHTDDGTRHTQFDDV  152 (331)
T ss_pred             eeccccccccccCCCCCCCCCCccccCcchHHHHHHH-----hccchhhhhhhhhhheecCCeeEEEecCCCcccccceE
Confidence                           00000      00111122211     125566666 6899998899999998443  4889999


Q ss_pred             EEccC
Q 016820          167 IVATG  171 (382)
Q Consensus       167 vlA~G  171 (382)
                      |+|.-
T Consensus       153 vla~P  157 (331)
T COG3380         153 VLAIP  157 (331)
T ss_pred             EEecC
Confidence            99984

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=98.75  E-value=1.2e-07  Score=91.15  Aligned_cols=99  Identities=20%  Similarity=0.180  Sum_probs=76.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+|+|||+|++|+++|..|++.|.+|+++++.    ..+                .......++.+.+.+.+++.||++
T Consensus       137 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~----~~~----------------~~~~~~~~~~~~~~~~l~~~gV~v  196 (427)
T TIGR03385       137 VENVVIIGGGYIGIEMAEALRERGKNVTLIHRS----ERI----------------LNKLFDEEMNQIVEEELKKHEINL  196 (427)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEECC----ccc----------------CccccCHHHHHHHHHHHHHcCCEE
Confidence            478999999999999999999999999999941    000                001123567778888889999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++.++. +.+..++.++.+|.||+|+|.+|+..
T Consensus       197 ~~~~~v~~i~~~~~-~v~~~~g~~i~~D~vi~a~G~~p~~~  236 (427)
T TIGR03385       197 RLNEEVDSIEGEER-VKVFTSGGVYQADMVILATGIKPNSE  236 (427)
T ss_pred             EeCCEEEEEecCCC-EEEEcCCCEEEeCEEEECCCccCCHH
Confidence            988 7889986554 32334567799999999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.75  E-value=1.9e-06  Score=81.28  Aligned_cols=45  Identities=16%  Similarity=0.142  Sum_probs=37.8

Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccccc
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKS  378 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~  378 (382)
                      ..||+|.+|=..+.  ..-..|..||..|+.|++..+.++++...+.
T Consensus       328 ~~~~lf~AGQi~G~--~GY~Eaaa~Gl~agina~~~~~~~~~~~~~~  372 (433)
T TIGR00137       328 DRQTLFFAGQLTGV--EGYVASTAGGWLAGINAARLALGEPLLTLPA  372 (433)
T ss_pred             CCCCEEECcccccc--hHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            57999999999874  3556899999999999999999987765553

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.73  E-value=1.8e-07  Score=89.18  Aligned_cols=118  Identities=17%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee-----------------------------cCC--Cc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT-----------------------------TTS--DV  107 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~-----------------------------~~~--~~  107 (382)
                      .+|+|||||++|+++|..|++.|++|+|+|+...... .|..+.                             ...  ..
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~~~-~g~gi~l~~~~~~~L~~~Gl~~~l~~~~~~~~~~~~~~g~~~   81 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQELSE-VGAGLQLAPNAMRHLERLGVADRLSGTGVTPKALYLMDGRKA   81 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCc-CCccceeChhHHHHHHHCCChHHHhhcccCcceEEEecCCCc
Confidence            5899999999999999999999999999997432111 111000                             000  00


Q ss_pred             ---c--cC---C----CCCC-CCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEE---CC-eEEEcCEEEE
Q 016820          108 ---E--NF---P----GFPQ-GILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFT---DS-KSVLADTVIV  168 (382)
Q Consensus       108 ---~--~~---~----~~~~-~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~---~~-~~~~~d~lvl  168 (382)
                         .  .+   .    ..+. .+...++.+.|.+.+.+. +++++.+ ++++++.+++.+.+..   ++ .++.+|.||.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~~~v~v~~~~~~~~~~~~adlvIg  161 (400)
T PRK06475         82 RPLLAMQLGDLARKRWHHPYIVCHRADLQSALLDACRNNPGIEIKLGAEMTSQRQTGNSITATIIRTNSVETVSAAYLIA  161 (400)
T ss_pred             ceEEEecchhhhhhcCCCCceeECHHHHHHHHHHHHHhcCCcEEEECCEEEEEecCCCceEEEEEeCCCCcEEecCEEEE
Confidence               0  00   0    0000 124466777777766554 7898888 7889987777766553   33 4689999999


Q ss_pred             ccCCCCcCC
Q 016820          169 ATGAVAKKL  177 (382)
Q Consensus       169 A~G~~~~~~  177 (382)
                      |.|.++..-
T Consensus       162 ADG~~S~vR  170 (400)
T PRK06475        162 CDGVWSMLR  170 (400)
T ss_pred             CCCccHhHH
Confidence            999976543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=98.72  E-value=2e-07  Score=89.95  Aligned_cols=57  Identities=18%  Similarity=0.226  Sum_probs=41.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-Cc---EEEEECCe---EEEcCEEEEccCCCCc
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RP---FKVFTDSK---SVLADTVIVATGAVAK  175 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~---~~v~~~~~---~~~~d~lvlA~G~~~~  175 (382)
                      ..++.+.+.+.+++.|++++.+ .++++..++ +.   +.+...++   .+.++.||+|+|....
T Consensus       129 g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~~  193 (439)
T TIGR01813       129 GAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFGS  193 (439)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCCC
Confidence            4568888888899999999998 688887653 32   33443333   3789999999998543

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=98.72  E-value=3.6e-07  Score=89.58  Aligned_cols=118  Identities=25%  Similarity=0.363  Sum_probs=75.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceecCC-C--------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTTTS-D--------------------------  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~~~-~--------------------------  106 (382)
                      .++||||||+|.+|+++|+.+++.|.+|+||||....+.   ..+|.+.... .                          
T Consensus        60 ~~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~~~~~~~~~~~~  139 (506)
T PRK06481         60 DKYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPVAGGNTMKASSGMNASETKFQKAQGIADSNDKFYEETLKGGGGTN  139 (506)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccCCccccCChHHHHhcCCCCCHHHHHHHHHHhcCCCC
Confidence            468999999999999999999999999999996421110   0011000000 0                          


Q ss_pred             -----------------c-----ccC-----C-C-------CCC--CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820          107 -----------------V-----ENF-----P-G-------FPQ--GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK  148 (382)
Q Consensus       107 -----------------~-----~~~-----~-~-------~~~--~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~  148 (382)
                                       +     ..+     + +       .|.  ......+.+.+.+.+++.|++++.+ .++++..+
T Consensus       140 d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~~~g~~~~r~~~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~  219 (506)
T PRK06481        140 DKALLRYFVDNSASAIDWLDSMGIKLDNLTITGGMSEKRTHRPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEK  219 (506)
T ss_pred             CHHHHHHHHhccHHHHHHHHHcCceEeecccCCCCCCCceeccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEec
Confidence                             0     000     0 0       000  0123457778888888899999988 68888765


Q ss_pred             CCc---EEEEECC---eEEEcCEEEEccCCCC
Q 016820          149 SRP---FKVFTDS---KSVLADTVIVATGAVA  174 (382)
Q Consensus       149 ~~~---~~v~~~~---~~~~~d~lvlA~G~~~  174 (382)
                      ++.   +.+...+   ..+.++.||+|+|...
T Consensus       220 ~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~~  251 (506)
T PRK06481        220 DGKVTGVKVKINGKETKTISSKAVVVTTGGFG  251 (506)
T ss_pred             CCEEEEEEEEeCCCeEEEEecCeEEEeCCCcc
Confidence            543   3343333   3588999999999743

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.71  E-value=1.1e-08  Score=97.99  Aligned_cols=109  Identities=28%  Similarity=0.271  Sum_probs=30.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-----------------------ccCCCCC--
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-----------------------ENFPGFP--  114 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-----------------------~~~~~~~--  114 (382)
                      ||||||||++|++||+.+++.|.+|+|||    +...+||........                       ......+  
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE----~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~   76 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIE----KGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQE   76 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-----SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST---------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEE----CCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccc
Confidence            79999999999999999999999999999    455666653321100                       0000000  


Q ss_pred             --------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc---EEEEEC--CeEEEcCEEEEccCC
Q 016820          115 --------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP---FKVFTD--SKSVLADTVIVATGA  172 (382)
Q Consensus       115 --------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~---~~v~~~--~~~~~~d~lvlA~G~  172 (382)
                              .......+...+.+.+.+.|++++.+ .+.++..+++.   +.+.+.  ..+++++.+|-|||.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~~i~~V~~~~~~g~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   77 DRYGWVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGGRITGVIVETKSGRKEIRAKVFIDATGD  148 (428)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                    01233445556667777889999999 68888777643   333322  345999999999994

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=98.70  E-value=5.1e-07  Score=87.53  Aligned_cols=94  Identities=12%  Similarity=0.162  Sum_probs=58.8

Q ss_pred             CchHHHHHHHHhhcCCEEE--------EEEeCCCCcc-hHHHHHHhccCCCcEEEcCceeEEEEec--CCceeeeeEEEE
Q 016820          214 GDSAMEEANFLTKYGSKVY--------IIHRRDSFRA-SKIMQNRALTNPKIDVIWNSVVLEAYGE--GDKKVLGGLKVK  282 (382)
Q Consensus       214 G~~a~e~a~~l~~~g~~v~--------~~~~~~~~~~-~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~g~~~~~v~~~  282 (382)
                      =.+|.|+..++.+.-+++.        .+.+...+.. ...+ .+.+++.||+++++++++++..+  ++...+.++.+.
T Consensus       191 whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL-~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~  269 (576)
T PRK13977        191 WHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPL-IKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLT  269 (576)
T ss_pred             hhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHH-HHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEE
Confidence            3579999988876522221        1122222222 2333 46788899999999999999985  222568888886


Q ss_pred             eccCCce-EEEecCeEEEeeCCCCChh
Q 016820          283 NLVTGQV-SDLKVSGLFFAIGHEPATK  308 (382)
Q Consensus       283 ~~~~~~~-~~~~~D~vi~~~G~~p~~~  308 (382)
                      ....+.. ...+.|.||+++|.-....
T Consensus       270 ~~~~~~~I~l~~~DlVivTnGs~t~ns  296 (576)
T PRK13977        270 RNGKEETIDLTEDDLVFVTNGSITESS  296 (576)
T ss_pred             eCCceeEEEecCCCEEEEeCCcCcccc
Confidence            4211212 2346899999998865443

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.70  E-value=2.6e-07  Score=89.81  Aligned_cols=100  Identities=18%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||+|+.|+++|..|++.|.+|+++++.    ...                 ......++.+.+++.+++. ++
T Consensus       168 ~~k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~----~~~-----------------l~~~d~~~~~~~~~~l~~~-I~  225 (460)
T PRK06292        168 LPKSLAVIGGGVIGLELGQALSRLGVKVTVFERG----DRI-----------------LPLEDPEVSKQAQKILSKE-FK  225 (460)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecC----CCc-----------------CcchhHHHHHHHHHHHhhc-cE
Confidence            4579999999999999999999999999999941    000                 0113467788888888888 99


Q ss_pred             EEEe-eEEEEEecCC-cEEEEE---CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSR-PFKVFT---DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~-~~~v~~---~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++ .+.+..   ++.++.+|.+++|+|.+|+...
T Consensus       226 i~~~~~v~~i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~~~~  272 (460)
T PRK06292        226 IKLGAKVTSVEKSGDEKVEELEKGGKTETIEADYVLVATGRRPNTDG  272 (460)
T ss_pred             EEcCCEEEEEEEcCCceEEEEEcCCceEEEEeCEEEEccCCccCCCC
Confidence            9988 7888876554 344422   2245999999999999998764

>PRK07538 hypothetical protein; Provisional

Probab=98.70  E-value=2e-07  Score=89.23  Aligned_cols=117  Identities=24%  Similarity=0.262  Sum_probs=74.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC-----------------------CCcc-------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT-----------------------SDVE-------  108 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~-----------------------~~~~-------  108 (382)
                      +||+|||||++|+++|..|++.|++|+|||+...... .|..+...                       ....       
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~-~g~gi~l~p~~~~~L~~lgl~~~l~~~~~~~~~~~~~~~~g~   79 (413)
T PRK07538          1 MKVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPELRP-LGVGINLLPHAVRELAELGLLDALDAIGIRTRELAYFNRHGQ   79 (413)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcccc-cCcceeeCchHHHHHHHCCCHHHHHhhCCCCcceEEEcCCCC
Confidence            4899999999999999999999999999997432211 11111000                       0000       


Q ss_pred             ---cCC-----CC--C-CCCChHHHHHHHHHHHHH-cC-cEEEEe-eEEEEEecCCcEEEEE-C-----CeEEEcCEEEE
Q 016820          109 ---NFP-----GF--P-QGILGGDLMDRCRNQSLR-FG-TQIFTE-TVSKVDFKSRPFKVFT-D-----SKSVLADTVIV  168 (382)
Q Consensus       109 ---~~~-----~~--~-~~~~~~~~~~~~~~~~~~-~g-i~~~~~-~v~~i~~~~~~~~v~~-~-----~~~~~~d~lvl  168 (382)
                         ..+     ++  + ..+...++.+.|.+.+.+ .| ..++.+ +|++++.+++.+.+.. +     ..++++|.||-
T Consensus        80 ~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~~~~~~~~~~~~g~~~~~~adlvIg  159 (413)
T PRK07538         80 RIWSEPRGLAAGYDWPQYSIHRGELQMLLLDAVRERLGPDAVRTGHRVVGFEQDADVTVVFLGDRAGGDLVSVRGDVLIG  159 (413)
T ss_pred             EEeeccCCcccCCCCceEEEEHHHHHHHHHHHHHhhcCCcEEEcCCEEEEEEecCCceEEEEeccCCCccceEEeeEEEE
Confidence               000     00  0 013456677777766654 46 457777 7889887666544332 1     13699999999


Q ss_pred             ccCCCCcC
Q 016820          169 ATGAVAKK  176 (382)
Q Consensus       169 A~G~~~~~  176 (382)
                      |.|.++..
T Consensus       160 ADG~~S~v  167 (413)
T PRK07538        160 ADGIHSAV  167 (413)
T ss_pred             CCCCCHHH
Confidence            99997644

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.70  E-value=2.2e-07  Score=88.18  Aligned_cols=119  Identities=12%  Similarity=0.080  Sum_probs=71.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC--CCCCcceecC---------------------CC--------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND--IAPGGQLTTT---------------------SD--------  106 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~--~~~gg~~~~~---------------------~~--------  106 (382)
                      .+||+|||||++|+++|..|++.|++|+|||+.....  ...+..+...                     ..        
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~a~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   81 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSRDYVLGRIRAGVLEQGTVDLLREAGVDERMDREGLVHEGTEIAFDG   81 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCCcccCCceeEeeECHHHHHHHHHCCChHHHHhcCceecceEEeeCC
Confidence            4799999999999999999999999999999754210  0111111000                     00        


Q ss_pred             -c--ccCCCCCC-----CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEe-cCC--cEEEEECCe--EEEcCEEEEccCC
Q 016820          107 -V--ENFPGFPQ-----GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDF-KSR--PFKVFTDSK--SVLADTVIVATGA  172 (382)
Q Consensus       107 -~--~~~~~~~~-----~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~-~~~--~~~v~~~~~--~~~~d~lvlA~G~  172 (382)
                       .  ..+.....     ......+...+.+.+.+.++.++.+ +++.+.. +.+  .+++..++.  ++++|.||-|.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~~~~~V~~~~~g~~~~i~adlvIGADG~  161 (390)
T TIGR02360        82 QRFRIDLKALTGGKTVMVYGQTEVTRDLMEAREAAGLTTVYDADDVRLHDLAGDRPYVTFERDGERHRLDCDFIAGCDGF  161 (390)
T ss_pred             EEEEEeccccCCCceEEEeCHHHHHHHHHHHHHhcCCeEEEeeeeEEEEecCCCccEEEEEECCeEEEEEeCEEEECCCC
Confidence             0  00110000     0123455566666667778887777 5555532 333  344432443  5899999999999


Q ss_pred             CCcC
Q 016820          173 VAKK  176 (382)
Q Consensus       173 ~~~~  176 (382)
                      ++..
T Consensus       162 ~S~V  165 (390)
T TIGR02360       162 HGVS  165 (390)
T ss_pred             chhh
Confidence            7644

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=98.69  E-value=4.4e-07  Score=86.86  Aligned_cols=56  Identities=14%  Similarity=0.160  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CC----eEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DS----KSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~----~~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+.|++++.+ +|++++.+++.+.+.+  .+    .++++|+||+|+|.+.
T Consensus       196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s  258 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGS  258 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcCh
Confidence            3455666777788889999988 7999987777665543  21    3689999999999864

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.69  E-value=1.6e-07  Score=90.46  Aligned_cols=120  Identities=17%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHH----cCCCeEEEecccCCCCC------CC----cc-----------------eec----
Q 016820           59 TKVCIIGSGPAAHTAAIYAAR----AELKPILFEGWMANDIA------PG----GQ-----------------LTT----  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~----~g~~v~lie~~~~~~~~------~g----g~-----------------~~~----  103 (382)
                      +||+|||||++|+++|..|++    .|++|+|||+.......      ..    ..                 +..    
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~~~~~~~~~~~~~~~~~~R~~~l~~~s~~~L~~lG~~~~l~~~   80 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSITPASISFFKKIGAWDHIQSD   80 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCCcccccccccCCCCCCCCCeEEcCHHHHHHHHHcCchhhhhhh
Confidence            589999999999999999999    79999999973211100      00    00                 000    


Q ss_pred             -C----------CC---cccCCCC------CCCCChHHHHHHHHHHHHHcC---cEEEEe-eEEEEEec-------CCcE
Q 016820          104 -T----------SD---VENFPGF------PQGILGGDLMDRCRNQSLRFG---TQIFTE-TVSKVDFK-------SRPF  152 (382)
Q Consensus       104 -~----------~~---~~~~~~~------~~~~~~~~~~~~~~~~~~~~g---i~~~~~-~v~~i~~~-------~~~~  152 (382)
                       .          ..   ...+...      ...+....+.+.+.+.+.+.+   ++++.+ ++.+++.+       ++.+
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v  160 (437)
T TIGR01989        81 RIQPFGRMQVWDGCSLALIRFDRDNGKEDMACIIENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWV  160 (437)
T ss_pred             cCCceeeEEEecCCCCceEEeecCCCCCceEEEEEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCce
Confidence             0          00   0000100      011344567777777777764   888888 78888642       3456


Q ss_pred             EEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          153 KVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       153 ~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      .+.. ++.++++|+||.|.|.++..-.
T Consensus       161 ~v~~~~g~~i~a~llVgADG~~S~vR~  187 (437)
T TIGR01989       161 HITLSDGQVLYTKLLIGADGSNSNVRK  187 (437)
T ss_pred             EEEEcCCCEEEeeEEEEecCCCChhHH
Confidence            6655 4467999999999999875543

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=98.68  E-value=4.6e-08  Score=92.05  Aligned_cols=116  Identities=23%  Similarity=0.220  Sum_probs=76.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcceec---------------CCCcccC------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQLTT---------------TSDVENF------  110 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~~~~---------------~~~~~~~------  110 (382)
                      .+||+|||||.||++||...+++|+++.|+.-      .+.++..+||.-..               ..+...+      
T Consensus         4 ~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN   83 (621)
T COG0445           4 EYDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLN   83 (621)
T ss_pred             CCceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhcc
Confidence            48999999999999999999999999999974      23444555543110               0000000      


Q ss_pred             ----C---CCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCc--EEEEE-CCeEEEcCEEEEccCCC
Q 016820          111 ----P---GFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRP--FKVFT-DSKSVLADTVIVATGAV  173 (382)
Q Consensus       111 ----~---~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~--~~v~~-~~~~~~~d~lvlA~G~~  173 (382)
                          |   +.....+...+.+.+++.++. .++.++.+.|.++..+++.  +-|.+ ++..+.++.||++||..
T Consensus        84 ~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~~v~GV~t~~G~~~~a~aVVlTTGTF  157 (621)
T COG0445          84 SSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQRVVGVVTADGPEFHAKAVVLTTGTF  157 (621)
T ss_pred             CCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCCeEEEEEeCCCCeeecCEEEEeeccc
Confidence                0   001122344555666666644 4899999999888775543  34444 45669999999999974

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=98.68  E-value=1.9e-07  Score=89.98  Aligned_cols=97  Identities=11%  Similarity=0.083  Sum_probs=75.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+++|||||+.|+++|..|++.|.+|+|+++.    ..             +    .....+++.+.+.+.+++.||++
T Consensus       148 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~----~~-------------l----~~~~d~~~~~~l~~~l~~~gI~i  206 (438)
T PRK13512        148 VDKALVVGAGYISLEVLENLYERGLHPTLIHRS----DK-------------I----NKLMDADMNQPILDELDKREIPY  206 (438)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCcEEEEecc----cc-------------c----chhcCHHHHHHHHHHHHhcCCEE
Confidence            468999999999999999999999999999931    00             0    01134577788888889999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      +.+ ++.+++.  ..+.+. ++..+.+|.|++|+|.+|+...
T Consensus       207 ~~~~~v~~i~~--~~v~~~-~g~~~~~D~vl~a~G~~pn~~~  245 (438)
T PRK13512        207 RLNEEIDAING--NEVTFK-SGKVEHYDMIIEGVGTHPNSKF  245 (438)
T ss_pred             EECCeEEEEeC--CEEEEC-CCCEEEeCEEEECcCCCcChHH
Confidence            988 6888863  233332 4567999999999999997653

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=98.67  E-value=1.7e-07  Score=96.51  Aligned_cols=100  Identities=14%  Similarity=0.110  Sum_probs=76.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+++|||||+.|+++|..|+++|.+|+|+|..                    +.+......++..+.+++.+++.||++
T Consensus       145 ~k~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~--------------------~~ll~~~ld~~~~~~l~~~L~~~GV~v  204 (847)
T PRK14989        145 SKRGAVVGGGLLGLEAAGALKNLGVETHVIEFA--------------------PMLMAEQLDQMGGEQLRRKIESMGVRV  204 (847)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecc--------------------ccchhhhcCHHHHHHHHHHHHHCCCEE
Confidence            468999999999999999999999999999931                    011011134567778888889999999


Q ss_pred             EEe-eEEEEEecC--CcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKS--RPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~--~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+|..++  ....+.. ++.++.+|.||+|+|.+|+..
T Consensus       205 ~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~~  248 (847)
T PRK14989        205 HTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQDK  248 (847)
T ss_pred             EcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCch
Confidence            998 688887543  2233333 556799999999999999864

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=98.65  E-value=7.7e-07  Score=79.07  Aligned_cols=162  Identities=18%  Similarity=0.263  Sum_probs=106.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      ...|+|||+|+.|+-+|..|.+.|.+|.++++...+..                                          
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv~~~~~~~g~~~vd~~  104 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGIRYKEVEDGLYVADSV  104 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCCCceeecCcceeccHH
Confidence            45799999999999999999999999999997764310                                          


Q ss_pred             --hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCChh-hhcc-
Q 016820          243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPATK-FVDG-  312 (382)
Q Consensus       243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~~-~~~~-  312 (382)
                        ...+. +...+.|++++.++.+.++..+++| .+.++.++...      ..+...+.++.||.|+|...... .+.. 
T Consensus       105 ~l~~~L~-~~A~~~Gv~I~~~t~V~dl~~~~~g-~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~v~~~l~~~  182 (257)
T PRK04176        105 EAAAKLA-AAAIDAGAKIFNGVSVEDVILREDP-RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAEVVSVLARK  182 (257)
T ss_pred             HHHHHHH-HHHHHcCCEEEcCceeceeeEeCCC-cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcHHHHHHHHH
Confidence              01111 2234579999999999998865543 25566654311      11346799999999999765432 1110 


Q ss_pred             ----cccc-------cCCC-ceeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHHHH
Q 016820          313 ----QLDL-------HSDG-YIITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYLQE  370 (382)
Q Consensus       313 ----~~~~-------~~~g-~i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l~~  370 (382)
                          ....       .+.| ...|+. +.+ -+|++|++|=++.     +....+..+| -+|+.+|+.|.+.|..
T Consensus       183 ~~~~~~~~~g~~~~~~~~~e~~v~~~-t~~-~~~g~~~~gm~~~~~~~~~rmg~~fg~m~~sg~~~a~~~~~~~~~  256 (257)
T PRK04176        183 GPELGIEVPGEKSMWAERGEKLVVEN-TGE-VYPGLYVAGMAANAVHGLPRMGPIFGGMLLSGKKVAELILEKLKK  256 (257)
T ss_pred             cCCcccccCCccccccCchHHHHHhc-CCe-EcCCEEEeehhhhhhcCCCccCchhHhHHHhHHHHHHHHHHHhhc
Confidence                1100       0111 222222 233 3799999998763     2344455444 7999999999999874

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=98.64  E-value=4.8e-07  Score=85.20  Aligned_cols=53  Identities=23%  Similarity=0.166  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +...+...+.+.+.+. |++++.+ +|.+|+..    .+.++++.+.+|+||+|+|.+.
T Consensus       143 ~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~----~v~t~~g~i~a~~VV~A~G~~s  197 (365)
T TIGR03364       143 EPREAIPALAAYLAEQHGVEFHWNTAVTSVETG----TVRTSRGDVHADQVFVCPGADF  197 (365)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC----eEEeCCCcEEeCEEEECCCCCh
Confidence            3455666676666654 9999887 68888643    4666667789999999999864

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=98.64  E-value=3.3e-07  Score=87.90  Aligned_cols=58  Identities=21%  Similarity=0.224  Sum_probs=40.9

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE---EEE--ECCe--EEEcCEEEEccCCCCc
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF---KVF--TDSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~---~v~--~~~~--~~~~d~lvlA~G~~~~  175 (382)
                      ....+.+.+.+.+++++++++.+ .++++..+++++   .+.  .++.  +++++.||+|||....
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            45778899999999999999999 688888776653   233  2333  4889999999999654

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=98.63  E-value=6.3e-07  Score=87.24  Aligned_cols=117  Identities=21%  Similarity=0.229  Sum_probs=74.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----C-CCCCCcc-eecCCCc-------------------ccC-
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----N-DIAPGGQ-LTTTSDV-------------------ENF-  110 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~-~~~~gg~-~~~~~~~-------------------~~~-  110 (382)
                      ..+||||||+|.+|+++|+.+++.|.+|+||||...    . ....+|. +......                   ... 
T Consensus         3 ~~~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (466)
T PRK08274          3 SMVDVLVIGGGNAALCAALAAREAGASVLLLEAAPREWRGGNSRHTRNLRCMHDAPQDVLVGAYPEEEFWQDLLRVTGGR   82 (466)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcccccCCceeeeCCCchhhccccccHHHHHHHHHHhhCCC
Confidence            357999999999999999999999999999997431    0 0111110 0000000                   000 


Q ss_pred             ----------------------CCCC------------CC-----CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC
Q 016820          111 ----------------------PGFP------------QG-----ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR  150 (382)
Q Consensus       111 ----------------------~~~~------------~~-----~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~  150 (382)
                                            .+.+            ..     -....+...+.+.+++.|++++.+ +|+++..+++
T Consensus        83 ~~~~~~~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~~~~~~~~~~~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g  162 (466)
T PRK08274         83 TDEALARLLIRESSDCRDWMRKHGVRFQPPLSGALHVARTNAFFWGGGKALVNALYRSAERLGVEIRYDAPVTALELDDG  162 (466)
T ss_pred             CCHHHHHHHHHcCHHHHHHHHhCCceEeecCCCccccCCCCeeecCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC
Confidence                                  0000            00     013467777888888899999988 7888876555


Q ss_pred             cEE-EEEC-----CeEEEcCEEEEccCCC
Q 016820          151 PFK-VFTD-----SKSVLADTVIVATGAV  173 (382)
Q Consensus       151 ~~~-v~~~-----~~~~~~d~lvlA~G~~  173 (382)
                      .+. +...     ...+.++.||+|+|..
T Consensus       163 ~v~gv~~~~~~g~~~~i~a~~VIlAtGg~  191 (466)
T PRK08274        163 RFVGARAGSAAGGAERIRAKAVVLAAGGF  191 (466)
T ss_pred             eEEEEEEEccCCceEEEECCEEEECCCCC
Confidence            432 3221     2358899999999974

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.62  E-value=1.7e-07  Score=83.19  Aligned_cols=138  Identities=17%  Similarity=0.086  Sum_probs=98.8

Q ss_pred             ccceecccccccccccccccccccCCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC
Q 016820           19 TKARTFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG   98 (382)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g   98 (382)
                      -.++..+ +++|+.+..|..+...-...++....+ +.++++++|||||+.++++|--++.+|.++.|+=+.        
T Consensus       152 Ytak~iL-IAtGg~p~~PnIpG~E~gidSDgff~L-ee~Pkr~vvvGaGYIavE~Agi~~gLgsethlfiR~--------  221 (478)
T KOG0405|consen  152 YTAKHIL-IATGGRPIIPNIPGAELGIDSDGFFDL-EEQPKRVVVVGAGYIAVEFAGIFAGLGSETHLFIRQ--------  221 (478)
T ss_pred             EecceEE-EEeCCccCCCCCCchhhccccccccch-hhcCceEEEEccceEEEEhhhHHhhcCCeeEEEEec--------
Confidence            3445555 669998887744444455555555444 457899999999999999999999999999998631        


Q ss_pred             cceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCeEE-EcCEEEEccCCCCc
Q 016820           99 GQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSKSV-LADTVIVATGAVAK  175 (382)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~~~-~~d~lvlA~G~~~~  175 (382)
                                   ..+..-..+.+.+.+.+.+...||+++.. .++.+.+..+. ..+.+..+++ ..|.|+.|+|+.|+
T Consensus       222 -------------~kvLR~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~Pn  288 (478)
T KOG0405|consen  222 -------------EKVLRGFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDDGLELVITSHGTIEDVDTLLWAIGRKPN  288 (478)
T ss_pred             -------------chhhcchhHHHHHHHHHHhhhcceeecccccceeeeecCCCceEEEEeccccccccEEEEEecCCCC
Confidence                         01122345677788888888899999988 57777665544 3333333444 49999999999998


Q ss_pred             CCCC
Q 016820          176 KLQF  179 (382)
Q Consensus       176 ~~~~  179 (382)
                      ...+
T Consensus       289 tk~L  292 (478)
T KOG0405|consen  289 TKGL  292 (478)
T ss_pred             cccc
Confidence            7643

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.61  E-value=4.6e-07  Score=86.85  Aligned_cols=114  Identities=20%  Similarity=0.257  Sum_probs=72.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceecCC--------------------------------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTTTS--------------------------------  105 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~~~--------------------------------  105 (382)
                      .+|+|||||++|+++|..|+++| ++|+|+|+..... ..|..+....                                
T Consensus         1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~-~~G~gi~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   79 (414)
T TIGR03219         1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG-EVGAGVSFGANAVRAIVGLGLGEAYTQVADSTPAPWQDIWFE   79 (414)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC-CCccceeeCccHHHHHHHcCChhHHHHHhcCCCccCcceeEE
Confidence            37999999999999999999998 6999999743221 1121110000                                


Q ss_pred             ----CcccC------CCCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCC
Q 016820          106 ----DVENF------PGFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGA  172 (382)
Q Consensus       106 ----~~~~~------~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~  172 (382)
                          ....+      +.++ ..+.+.++.+.+.+.+.  +..++.+ +|++++.+++.+.+.. ++.++.+|.||.|.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~~~~v~~~~g~~~~ad~vVgADG~  157 (414)
T TIGR03219        80 WRNGSDASYLGATIAPGVGQSSVHRADFLDALLKHLP--EGIASFGKRATQIEEQAEEVQVLFTDGTEYRCDLLIGADGI  157 (414)
T ss_pred             EEecCccceeeeeccccCCcccCCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCCcEEEEEcCCCEEEeeEEEECCCc
Confidence                00000      0000 01334556666655443  3445556 7999988777787765 4456999999999999


Q ss_pred             CCc
Q 016820          173 VAK  175 (382)
Q Consensus       173 ~~~  175 (382)
                      ++.
T Consensus       158 ~S~  160 (414)
T TIGR03219       158 KSA  160 (414)
T ss_pred             cHH
Confidence            764

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.61  E-value=1.8e-07  Score=92.60  Aligned_cols=101  Identities=14%  Similarity=0.187  Sum_probs=64.8

Q ss_pred             CCCcEEEEcCCchHHHHHHH-------HhhcCCEEEEEEeCCCC--c----chHHHHHHhccCCCcEEEcCceeEEEEec
Q 016820          204 RDKPLAVIGGGDSAMEEANF-------LTKYGSKVYIIHRRDSF--R----ASKIMQNRALTNPKIDVIWNSVVLEAYGE  270 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~-------l~~~g~~v~~~~~~~~~--~----~~~~~~~~~l~~~gv~~~~~~~v~~i~~~  270 (382)
                      .++..+++|++..+++++..       +.+.+.+|++....+..  .    ....+ .+.+++.|+++++++.+.++..+
T Consensus       159 ~p~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~L-~~~~~~~gv~v~~~t~v~~l~~~  237 (557)
T PRK07843        159 VPLNMVVMQQDYVWLNLLKRHPRGVLRALKVGARTLWAKATGKNLLGMGQALAAGL-RIGLQRAGVPVLLNTPLTDLYVE  237 (557)
T ss_pred             ccccccccHHHHHHHHhhhcCchhHHHHHHHHHHHHHHhccCCCcccCcHHHHHHH-HHHHHcCCCEEEeCCEEEEEEEe
Confidence            35678899999999987754       44555555544333221  1    12222 35567789999999999999876


Q ss_pred             CCceeeeeEEEEeccCCceEEEecC-eEEEee-CCCCChhh
Q 016820          271 GDKKVLGGLKVKNLVTGQVSDLKVS-GLFFAI-GHEPATKF  309 (382)
Q Consensus       271 ~~g~~~~~v~~~~~~~~~~~~~~~D-~vi~~~-G~~p~~~~  309 (382)
                      + + .+.+|.+..  .++...+.++ .||+|+ |+.+|..+
T Consensus       238 ~-g-~v~Gv~~~~--~g~~~~i~A~~~VIlAtGG~~~n~~m  274 (557)
T PRK07843        238 D-G-RVTGVHAAE--SGEPQLIRARRGVILASGGFEHNEQM  274 (557)
T ss_pred             C-C-EEEEEEEEe--CCcEEEEEeceeEEEccCCcCcCHHH
Confidence            4 3 366676653  2445668885 688866 55555443

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.60  E-value=3.5e-07  Score=85.98  Aligned_cols=106  Identities=18%  Similarity=0.271  Sum_probs=67.6

Q ss_pred             cEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCc--ceecCC-Cc-------------ccCCC---------
Q 016820           60 KVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGG--QLTTTS-DV-------------ENFPG---------  112 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg--~~~~~~-~~-------------~~~~~---------  112 (382)
                      ||+|||||+||+++|..|++.  |++|.|+|+..    ..++  .|.... +.             +.++.         
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~----~~~~~~tw~~~~~~~~~~~~~~~~~~v~~~W~~~~v~~~~~~   76 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGR----TIGGNHTWSFFDSDLSDAQHAWLADLVQTDWPGYEVRFPKYR   76 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCC----CCCCcccceecccccchhhhhhhhhhheEeCCCCEEECcchh
Confidence            799999999999999999987  99999999632    2222  111000 00             00100         


Q ss_pred             ----CC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          113 ----FP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       113 ----~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                          .+ ..+...++.+.+.+.+.. +  ++.+ +|..++  .+.+++ .++.+++++.||.|.|..+.
T Consensus        77 ~~l~~~Y~~I~r~~f~~~l~~~l~~-~--i~~~~~V~~v~--~~~v~l-~dg~~~~A~~VI~A~G~~s~  139 (370)
T TIGR01789        77 RKLKTAYRSMTSTRFHEGLLQAFPE-G--VILGRKAVGLD--ADGVDL-APGTRINARSVIDCRGFKPS  139 (370)
T ss_pred             hhcCCCceEEEHHHHHHHHHHhhcc-c--EEecCEEEEEe--CCEEEE-CCCCEEEeeEEEECCCCCCC
Confidence                00 123445666666554433 3  4444 788884  345666 57778999999999998754

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.60  E-value=4.1e-07  Score=89.17  Aligned_cols=55  Identities=18%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-----eEEEcCEEEEccCCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-----KSVLADTVIVATGAVA  174 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-----~~~~~d~lvlA~G~~~  174 (382)
                      ..+...+...+.+.|++++.. +|+++..+++.+.+.+.+     .++.++.||.|+|.+.
T Consensus       155 ~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~~~v~~~~~~g~~~~i~a~~VVnAaG~wa  215 (502)
T PRK13369        155 ARLVVLNALDAAERGATILTRTRCVSARREGGLWRVETRDADGETRTVRARALVNAAGPWV  215 (502)
T ss_pred             HHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCEEEEEEEeCCCCEEEEEecEEEECCCccH
Confidence            344445556677889999988 788988777666665422     3599999999999864

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=98.59  E-value=4.9e-07  Score=86.44  Aligned_cols=99  Identities=26%  Similarity=0.337  Sum_probs=78.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+++|||+|++|+++|..|++.|++|+++|.    ...+++.+.               . .++.+.+.+.++++|+++
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~----~~~~~~~~~---------------~-~~~~~~~~~~l~~~gi~~  195 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAKRGKKVTLIEA----ADRLGGQLL---------------D-PEVAEELAELLEKYGVEL  195 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHHcCCeEEEEEc----ccccchhhh---------------h-HHHHHHHHHHHHHCCcEE
Confidence            47999999999999999999999999999993    222222111               0 678889999999999999


Q ss_pred             EEe-eEEEEEecCCcEE----EEECCeEEEcCEEEEccCCCCcC
Q 016820          138 FTE-TVSKVDFKSRPFK----VFTDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~----v~~~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +.+ .+..|+...+...    .......+++|.+++++|.+|+.
T Consensus       196 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~~  239 (415)
T COG0446         196 LLGTKVVGVEGKGNTLVVERVVGIDGEEIKADLVIIGPGERPNV  239 (415)
T ss_pred             EeCCceEEEEcccCcceeeEEEEeCCcEEEeeEEEEeecccccH
Confidence            888 6889987765432    34456679999999999999963

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=98.59  E-value=9.2e-07  Score=86.74  Aligned_cols=33  Identities=27%  Similarity=0.227  Sum_probs=31.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+||+|||||..|+++|+.|++.|++|+|||+
T Consensus         5 ~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk   37 (508)
T PRK12266          5 ETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQ   37 (508)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCeEEEEec
Confidence            458999999999999999999999999999997

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=98.58  E-value=1.1e-06  Score=82.44  Aligned_cols=57  Identities=23%  Similarity=0.232  Sum_probs=45.5

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEEEEECCe-E-EEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFTDSK-S-VLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~~~~-~-~~~d~lvlA~G~~~  174 (382)
                      ...++...+.+.+.+.|..+..+ +|+.|..+++ .+.+.+..+ + ++++.||.|.|...
T Consensus       151 ~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         151 DPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             cHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH
Confidence            45677788888888889999999 7999999888 455555443 3 99999999999854

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=98.58  E-value=4.3e-07  Score=93.42  Aligned_cols=100  Identities=17%  Similarity=0.163  Sum_probs=76.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+++|||||+.|+++|..|++.|.+|+|++..                    +.+......++....+++.+++.||++
T Consensus       140 ~k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~--------------------~~ll~~~ld~~~~~~l~~~l~~~GV~v  199 (785)
T TIGR02374       140 FKKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHA--------------------PGLMAKQLDQTAGRLLQRELEQKGLTF  199 (785)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEccC--------------------CchhhhhcCHHHHHHHHHHHHHcCCEE
Confidence            468999999999999999999999999999931                    000001123556677788888999999


Q ss_pred             EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .++++..++....+.. ++.++.+|.||+|+|.+|+..
T Consensus       200 ~~~~~v~~i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn~~  241 (785)
T TIGR02374       200 LLEKDTVEIVGATKADRIRFKDGSSLEADLIVMAAGIRPNDE  241 (785)
T ss_pred             EeCCceEEEEcCCceEEEEECCCCEEEcCEEEECCCCCcCcH
Confidence            999 5888875544333443 556799999999999999765

>PRK07121 hypothetical protein; Validated

Probab=98.58  E-value=1e-06  Score=86.21  Aligned_cols=34  Identities=32%  Similarity=0.368  Sum_probs=32.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||||||+|.||+++|+++++.|.+|+|+||.
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~   52 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAAAGARVLVLERA   52 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            4689999999999999999999999999999974

>PRK07804 L-aspartate oxidase; Provisional

Probab=98.58  E-value=1.1e-06  Score=86.73  Aligned_cols=118  Identities=20%  Similarity=0.198  Sum_probs=76.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCC-CcceecC--C-------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAP-GGQLTTT--S-------------------------  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~-gg~~~~~--~-------------------------  105 (382)
                      ...||+|||+|.||+.||.++++.|.+|+|+||.....   ... |+.....  .                         
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s~~a~Ggi~a~~~~~ds~e~~~~d~~~~g~g~~d~~~v~~   94 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGSTRWAQGGIAAVLDPGDSPEAHVADTLVAGAGLCDPDAVRS   94 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCchhhhccceeeccCCCCCHHHHHHHHHHhcCCCCCHHHHHH
Confidence            56899999999999999999999999999999742110   000 1100000  0                         


Q ss_pred             --------------CcccCC-------------CCC--------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC
Q 016820          106 --------------DVENFP-------------GFP--------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS  149 (382)
Q Consensus       106 --------------~~~~~~-------------~~~--------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~  149 (382)
                                    .-..|.             +..        ....+.++.+.|.+.+++.+++++.+ .+.++..++
T Consensus        95 ~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~~g~~~~r~~~~~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~  174 (541)
T PRK07804         95 LVAEGPRAVRELVALGARFDESPDGRWALTREGGHSRRRIVHAGGDATGAEVQRALDAAVRADPLDIREHALALDLLTDG  174 (541)
T ss_pred             HHHHHHHHHHHHHHcCCccccCCCCcEeeeccCCeecCeeEecCCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcC
Confidence                          000000             000        01245678888888888899999888 688886654


Q ss_pred             C-c---EEEE-----ECC--eEEEcCEEEEccCCCC
Q 016820          150 R-P---FKVF-----TDS--KSVLADTVIVATGAVA  174 (382)
Q Consensus       150 ~-~---~~v~-----~~~--~~~~~d~lvlA~G~~~  174 (382)
                      + .   +.+.     .++  ..+.++.||+|||...
T Consensus       175 ~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~~  210 (541)
T PRK07804        175 TGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGLG  210 (541)
T ss_pred             CCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCCC
Confidence            3 2   3333     122  3588999999999965

>TIGR00551 nadB L-aspartate oxidase

Probab=98.58  E-value=8.4e-07  Score=86.68  Aligned_cols=58  Identities=19%  Similarity=0.311  Sum_probs=42.2

Q ss_pred             ChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCcEE---EEECC--eEEEcCEEEEccCCCCc
Q 016820          118 LGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRPFK---VFTDS--KSVLADTVIVATGAVAK  175 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~~---v~~~~--~~~~~d~lvlA~G~~~~  175 (382)
                      +...+.+.+.+.+.+ .+|+++.+ .++++..+++.+.   +...+  ..+.++.||+|||....
T Consensus       126 ~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~~  190 (488)
T TIGR00551       126 TGREVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAGK  190 (488)
T ss_pred             CHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCcccC
Confidence            456788888888877 69999998 6888876555432   22222  35899999999999654

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=98.58  E-value=3.2e-07  Score=85.45  Aligned_cols=96  Identities=23%  Similarity=0.272  Sum_probs=73.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC-------------CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHH
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE-------------LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDR  125 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g-------------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (382)
                      .+++|||||+.|+++|.+|+..-             .+|+|||+.        -            .. .....+++.++
T Consensus       156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~--------p------------~I-Lp~~~~~l~~~  214 (405)
T COG1252         156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG--------P------------RI-LPMFPPKLSKY  214 (405)
T ss_pred             eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccC--------c------------hh-ccCCCHHHHHH
Confidence            47999999999999999998761             389999931        0            00 12345788999


Q ss_pred             HHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          126 CRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       126 ~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      .++.++++||+++.+ .|++++++  .+++...++++.++.+|.|+|.++...
T Consensus       215 a~~~L~~~GV~v~l~~~Vt~v~~~--~v~~~~g~~~I~~~tvvWaaGv~a~~~  265 (405)
T COG1252         215 AERALEKLGVEVLLGTPVTEVTPD--GVTLKDGEEEIPADTVVWAAGVRASPL  265 (405)
T ss_pred             HHHHHHHCCCEEEcCCceEEECCC--cEEEccCCeeEecCEEEEcCCCcCChh
Confidence            999999999999999 69999855  445543333599999999999987544

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=98.57  E-value=9.8e-07  Score=87.25  Aligned_cols=33  Identities=36%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+||+|||||..|+++|+.|++.|++|+|||+
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~rG~~V~LlEk   37 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCALRGLRCILVER   37 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEEC
Confidence            458999999999999999999999999999997

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=98.57  E-value=7.8e-07  Score=90.24  Aligned_cols=55  Identities=15%  Similarity=0.124  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeE-EEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKS-VLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~-~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+ |++++.+ .|+++..+++.|.+.++++. +.+|.||+|+|...
T Consensus       407 p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~~ad~VV~A~G~~s  463 (662)
T PRK01747        407 PAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQLDFAGGTLASAPVVVLANGHDA  463 (662)
T ss_pred             HHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEEEEECCCcEEECCEEEECCCCCc
Confidence            34566666666667 8999887 69999887778888876665 67999999999864

>TIGR00292 thiazole biosynthesis enzyme

Probab=98.56  E-value=1.4e-06  Score=77.28  Aligned_cols=161  Identities=17%  Similarity=0.212  Sum_probs=105.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------c---------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------A---------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------~---------------------------------  242 (382)
                      .-.|+|||+|+.|+-+|..|.+.|.+|.++++...+.         .                                 
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi~~~~~~~g~~~~~~~  100 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGIRYEDEGDGYVVADSA  100 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCCCeeeccCceEEeeHH
Confidence            4579999999999999999999999999999876541         0                                 


Q ss_pred             --hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCCh-hhhcc-
Q 016820          243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPAT-KFVDG-  312 (382)
Q Consensus       243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~-~~~~~-  312 (382)
                        ...+. +...+.|++++.++.+.++..++++..+.++.++...      ..+...+.++.||.|||..... .++.. 
T Consensus       101 el~~~L~-~~a~e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l~~~  179 (254)
T TIGR00292       101 EFISTLA-SKALQAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVCAKK  179 (254)
T ss_pred             HHHHHHH-HHHHHcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHHHHH
Confidence              01111 1234578999999999998876653236667664321      1134679999999999976543 33321 


Q ss_pred             -cccccC-----CCce--------eeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHH
Q 016820          313 -QLDLHS-----DGYI--------ITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYL  368 (382)
Q Consensus       313 -~~~~~~-----~g~i--------~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l  368 (382)
                       .+..+.     -+.+        .|+. +.+ -+|++|++|=.+.     +....+..+| -+|+.+|+.|.+.|
T Consensus       180 ~~~~~~~~~~~g~~~~~~~~~e~~~~~~-t~~-~~~g~~~~gm~~~~~~~~~rmgp~fg~m~~sg~~~a~~~~~~~  253 (254)
T TIGR00292       180 IVLEDQVPKLGGEKSMWAEVAEVAIHEN-TRE-VVPNLYVAGMAVAAVHGLPRMGPIFGGMLLSGKHVAEQILEKL  253 (254)
T ss_pred             cCcccCCcccCCchhhhhhhhHHHHHhc-cCc-ccCCEEEechhhhhhcCCCCcCchHHHHHHhhHHHHHHHHHHh
Confidence             111111     1111        1221 222 3799999998763     2344555544 78999999998876

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.56  E-value=4.9e-07  Score=87.13  Aligned_cols=60  Identities=20%  Similarity=0.198  Sum_probs=43.8

Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcE--EEEE-CCeEEEcCEEEEccCCCCcC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF--KVFT-DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~--~v~~-~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +....+-++|.+.+.+.|++++.++|+++..+++..  .+.+ ++.++++|.+|=|+|.....
T Consensus       151 lDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~s~L  213 (454)
T PF04820_consen  151 LDRAKFDQFLRRHAEERGVEVIEGTVVDVELDEDGRITAVRLDDGRTIEADFFIDASGRRSLL  213 (454)
T ss_dssp             EEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG-CC
T ss_pred             EeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCccchh
Confidence            356788899999999999999999988887766553  4555 45669999999999987644

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=98.56  E-value=2e-06  Score=82.27  Aligned_cols=55  Identities=18%  Similarity=0.046  Sum_probs=41.7

Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCc-EEEEECCeEEEcCEEEEccCCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRP-FKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~-~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ..+...+.+.+.+.|++++.+ +|.+++.. ++. +.+.++++.+.+++||+|+|.+.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence            345555667778889999988 79999754 344 45777777899999999999854

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.56  E-value=1e-06  Score=87.73  Aligned_cols=58  Identities=26%  Similarity=0.410  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE----EEE-CCe--EEEcCEEEEccCCCCc
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK----VFT-DSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~----v~~-~~~--~~~~d~lvlA~G~~~~  175 (382)
                      .+..+...+.+.+.+.||+++.+ .+.++..+++.+.    +.. ++.  .+.++.||+|||....
T Consensus       133 tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~~~  198 (575)
T PRK05945        133 TGHAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGYGR  198 (575)
T ss_pred             ChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCCcC
Confidence            34677788888888889999888 6888765544322    122 222  4899999999999653

>PRK06175 L-aspartate oxidase; Provisional

Probab=98.56  E-value=9e-07  Score=85.01  Aligned_cols=50  Identities=16%  Similarity=0.091  Sum_probs=39.0

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      .|.+.||. ..+|..||+||+|.+++ ..       -.....+...|+.|+++|+..+.
T Consensus       331 ~GGi~vd~-~~~t~i~gLYAaGE~a~~g~hG~nrl~gnsl~~~lvfGr~Ag~~a~~~~~  388 (433)
T PRK06175        331 MGGIKVDL-NSKTSMKNLYAFGEVSCTGVHGANRLASNSLLEGLVFSKRGAEKINSEID  388 (433)
T ss_pred             cCCEEECC-CccccCCCeEecccccccCCCccccchhHHHHHHHHHHHHHHHHHHHhhh
Confidence            58889998 56689999999999863 11       22456788999999999987664

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=98.54  E-value=1.4e-06  Score=83.54  Aligned_cols=56  Identities=18%  Similarity=0.173  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+.|++++.+ +|++++.+++.+ .+.++++++.+|+||+|+|.+.
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~  257 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYS  257 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcch
Confidence            3456666777778889999887 799998776654 4667777899999999999864

>PRK10262 thioredoxin reductase; Provisional

Probab=98.54  E-value=9.5e-07  Score=81.62  Aligned_cols=98  Identities=20%  Similarity=0.216  Sum_probs=73.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|..|+++|..|++.+.+|+++++.                    +.++   ....+.+.+++.+++.+++
T Consensus       145 ~g~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~--------------------~~~~---~~~~~~~~~~~~l~~~gV~  201 (321)
T PRK10262        145 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR--------------------DGFR---AEKILIKRLMDKVENGNII  201 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEEC--------------------CccC---CCHHHHHHHHhhccCCCeE
Confidence            4579999999999999999999999999999941                    0010   1134566777777888999


Q ss_pred             EEEe-eEEEEEecCCc---EEEEEC-----CeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFTD-----SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~~-----~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.++..   +++...     ..++.+|.||+++|.+|+..
T Consensus       202 i~~~~~v~~v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~~~  251 (321)
T PRK10262        202 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTA  251 (321)
T ss_pred             EEeCCEEEEEEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccChh
Confidence            9987 68888765432   333321     13599999999999998775

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.53  E-value=1.8e-06  Score=86.66  Aligned_cols=121  Identities=17%  Similarity=0.163  Sum_probs=74.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcc-------------------------------eecC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQ-------------------------------LTTT  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~-------------------------------~~~~  104 (382)
                      .++||+||||||+||++|..|++. |++|.|||+..... ..|.-                               +...
T Consensus        31 ~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~-~~grA~gl~prtleiL~~lGl~d~l~~~g~~~~~~~~~~~  109 (634)
T PRK08294         31 DEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRL-ELGQADGIACRTMEMFQAFGFAERILKEAYWINETAFWKP  109 (634)
T ss_pred             CCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCCC-CCCeeeEEChHHHHHHHhccchHHHHhhcccccceEEEcC
Confidence            368999999999999999999995 99999999743211 11100                               0000


Q ss_pred             C-----Cc------ccC----CCCCC-CCChHHHHHHHHHHHHHcC--cEEEEe-eEEEEEecC---CcEEEEE------
Q 016820          105 S-----DV------ENF----PGFPQ-GILGGDLMDRCRNQSLRFG--TQIFTE-TVSKVDFKS---RPFKVFT------  156 (382)
Q Consensus       105 ~-----~~------~~~----~~~~~-~~~~~~~~~~~~~~~~~~g--i~~~~~-~v~~i~~~~---~~~~v~~------  156 (382)
                      .     ..      ...    ..++. .+....+.+.+.+.+.+.+  +.+..+ +++++..++   ..+++..      
T Consensus       110 ~~~~~~~i~r~~~~~~~~~~~~~~~~~~l~Q~~le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~  189 (634)
T PRK08294        110 DPADPSTIVRTGRVQDTEDGLSEFPHVIVNQARVHDYFLDVMRNSPTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGE  189 (634)
T ss_pred             CCccccceeccccccccCCCCCCCccEeeCHHHHHHHHHHHHHhcCCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCC
Confidence            0     00      000    00111 1233456677777777765  466666 688887553   2354443      


Q ss_pred             -CC--eEEEcCEEEEccCCCCcCCC
Q 016820          157 -DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       157 -~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                       ++  .++++|+||-|.|.++.+-.
T Consensus       190 ~~g~~~tv~A~~lVGaDGa~S~VR~  214 (634)
T PRK08294        190 HEGEEETVRAKYVVGCDGARSRVRK  214 (634)
T ss_pred             CCCceEEEEeCEEEECCCCchHHHH
Confidence             13  46999999999999875543

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.51  E-value=5.1e-07  Score=82.12  Aligned_cols=115  Identities=22%  Similarity=0.325  Sum_probs=74.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHc------CCCeEEEecccCCCCCCCcceecCCCc---------c------------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARA------ELKPILFEGWMANDIAPGGQLTTTSDV---------E------------  108 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~~~~~gg~~~~~~~~---------~------------  108 (382)
                      ...+||+|||||||||++|++|+++      .++|.++|    +...+||+...-..+         .            
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvE----Kaa~~GghtlSGaviep~aldEL~P~wke~~apl~t~  149 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVE----KAAEVGGHTLSGAVIEPGALDELLPDWKEDGAPLNTP  149 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEe----eccccCCceecceeeccchhhhhCcchhhcCCccccc
Confidence            3568999999999999999999887      58899999    455566543211000         0            


Q ss_pred             ---------------cCCCCCC-------CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-E-EEEEC------
Q 016820          109 ---------------NFPGFPQ-------GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-F-KVFTD------  157 (382)
Q Consensus       109 ---------------~~~~~~~-------~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~-~v~~~------  157 (382)
                                     ..|-.+.       -+...++..++-+.++++|++++.+ .+.++-.+++. + -+.++      
T Consensus       150 vT~d~~~fLt~~~~i~vPv~~pm~NhGNYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~edgsVkGiaT~D~GI~k  229 (621)
T KOG2415|consen  150 VTSDKFKFLTGKGRISVPVPSPMDNHGNYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDEDGSVKGIATNDVGISK  229 (621)
T ss_pred             ccccceeeeccCceeecCCCcccccCCcEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCCCcEeeEeeccccccC
Confidence                           0010000       1245789999999999999999988 45555444332 1 22221      


Q ss_pred             ----------CeEEEcCEEEEccCCCC
Q 016820          158 ----------SKSVLADTVIVATGAVA  174 (382)
Q Consensus       158 ----------~~~~~~d~lvlA~G~~~  174 (382)
                                +-.+.++.-|+|-|++.
T Consensus       230 ~G~pKd~FerGme~hak~TifAEGc~G  256 (621)
T KOG2415|consen  230 DGAPKDTFERGMEFHAKVTIFAEGCHG  256 (621)
T ss_pred             CCCccccccccceecceeEEEeccccc
Confidence                      12477888888888764

>PLN02661 Putative thiazole synthesis

Probab=98.50  E-value=5.2e-06  Score=75.98  Aligned_cols=165  Identities=19%  Similarity=0.212  Sum_probs=105.7

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCCcc----------------------------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSFRA----------------------------------------  242 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~~~----------------------------------------  242 (382)
                      ..-.|+|||+|..|+-+|..|.+. +.+|+++++...+..                                        
T Consensus        91 ~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~gg~l~~~~vv~~~a~e~LeElGV~fd~~dgy~vv~h  170 (357)
T PLN02661         91 ADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRKPAHLFLDELGVPYDEQENYVVIKH  170 (357)
T ss_pred             ccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccceeeCcccccccccccHHHHHHHHcCCCcccCCCeeEecc
Confidence            345899999999999999999975 789999998654310                                        


Q ss_pred             ----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------C---CceEEEecCeEEEeeCCCCChhh
Q 016820          243 ----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------T---GQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       243 ----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~---~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                          ...+.++.+++.|++++.+..+.++..+++  .+.++.++...      .   .+...+.++.||++||..+....
T Consensus       171 a~e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g~~ga  248 (357)
T PLN02661        171 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGD--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDGPFGA  248 (357)
T ss_pred             hHHHHHHHHHHHHhcCCCEEEeCeEeeeEEecCC--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCCcchh
Confidence                011223344567899999999999887653  36667653211      1   12346899999999997653211


Q ss_pred             h--c--ccccccC----CCc--------eeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHH
Q 016820          310 V--D--GQLDLHS----DGY--------IITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHY  367 (382)
Q Consensus       310 ~--~--~~~~~~~----~g~--------i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~  367 (382)
                      .  .  ..+....    -..        ..|+. +.+ -+|++|++|=...     +....+..+| -+|+.+|+.|.+.
T Consensus       249 ~~~~~~~~~g~~~~~pg~~~~~~~~~e~~~v~~-t~e-v~pgl~~~gm~~~~~~g~~rmgp~fg~m~~sg~k~a~~~~~~  326 (357)
T PLN02661        249 TGVKRLKSIGMIDSVPGMKALDMNAAEDAIVRL-TRE-VVPGMIVTGMEVAEIDGSPRMGPTFGAMMISGQKAAHLALKA  326 (357)
T ss_pred             hhhhcccccCCccCCCCccccchhhHHHHHHhc-cCc-ccCCEEEeccchhhhcCCCccCchhHhHHhhhHHHHHHHHHH
Confidence            1  1  0011100    011        11221 222 3799999998763     2344455444 8999999999999


Q ss_pred             HHHcc
Q 016820          368 LQEIG  372 (382)
Q Consensus       368 l~~~~  372 (382)
                      |...+
T Consensus       327 l~~~~  331 (357)
T PLN02661        327 LGLPN  331 (357)
T ss_pred             Hccch
Confidence            98543

>PTZ00367 squalene epoxidase; Provisional

Probab=98.50  E-value=9.3e-07  Score=87.15  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=32.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM   91 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~   91 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            46899999999999999999999999999999753

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.49  E-value=2.6e-06  Score=84.58  Aligned_cols=51  Identities=16%  Similarity=0.201  Sum_probs=40.1

Q ss_pred             CCceeeCCCCCcC-CCCceEEecccCC-chh-------hHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHT-SVPGVFAAGDVQD-KKY-------RQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t-~~~~vya~GD~~~-~~~-------~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+| +.||+||+|+|++ ...       -....+...|+.|+.++++++..
T Consensus       346 ~GGi~vd~-~~~t~~IpGLyAaGE~a~~g~hGanrlggnsl~~~~v~G~~Ag~~aa~~~~~  405 (566)
T PRK06452        346 MGGIDVDI-DGRNPDIVGLFSAGEAACVSVHGANRLGSNSLLDTLVFGQVTGRTVVQFLKS  405 (566)
T ss_pred             cCCeEECC-CCCcCCcCCeEecccccccCCCCcccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence            58889997 4567 4999999999974 221       15678899999999999988764

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=98.48  E-value=4.2e-06  Score=70.08  Aligned_cols=162  Identities=21%  Similarity=0.297  Sum_probs=108.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------ch------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------AS------------------------  243 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------~~------------------------  243 (382)
                      .-.|+|||+|++|+-.|.+|++.|.+|.++.++-.+.                 ..                        
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~iL~e~gI~ye~~e~g~~v~ds~  109 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIWGGGMLFNKIVVREEADEILDEFGIRYEEEEDGYYVADSA  109 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCcccccccccceeeecchHHHHHHHhCCcceecCCceEEecHH
Confidence            4579999999999999999999999999999988771                 00                        


Q ss_pred             ---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC------CceEEEecCeEEEeeCCCCChh-hhc--
Q 016820          244 ---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT------GQVSDLKVSGLFFAIGHEPATK-FVD--  311 (382)
Q Consensus       244 ---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~------~~~~~~~~D~vi~~~G~~p~~~-~~~--  311 (382)
                         ..+..+.+ +.|.+++....++++--.++. .+.++.++...-      -++..+++++++.+||.....- ++.  
T Consensus       110 e~~skl~~~a~-~aGaki~n~~~veDvi~r~~~-rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda~v~~~~~kr  187 (262)
T COG1635         110 EFASKLAARAL-DAGAKIFNGVSVEDVIVRDDP-RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDAEVVSFLAKR  187 (262)
T ss_pred             HHHHHHHHHHH-hcCceeeecceEEEEEEecCC-ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCchHHHHHHHHh
Confidence               11112223 357888989999988765542 377787764321      2346788999999999987542 222  


Q ss_pred             ---ccccccCCCc--------eeeCCCCCcCCCCceEEecccCC-----chhhHHHHHH-hhHHHHHHHHHHHHHH
Q 016820          312 ---GQLDLHSDGY--------IITKPGTTHTSVPGVFAAGDVQD-----KKYRQAVTAA-GTGCMAALEAEHYLQE  370 (382)
Q Consensus       312 ---~~~~~~~~g~--------i~vd~~~~~t~~~~vya~GD~~~-----~~~~~~~~a~-~~g~~aa~~i~~~l~~  370 (382)
                         .++.+...+.        +.|+. +++ -+||+|++|=+..     +....+..+| -+|+.+|+.|.+.|..
T Consensus       188 ~~~l~~~~~Ge~~mw~e~~E~lvV~~-T~e-V~pgL~vaGMa~~av~G~pRMGPiFGgMllSGkkaAe~i~e~L~~  261 (262)
T COG1635         188 IPELGIEVPGEKSMWAERGEDLVVEN-TGE-VYPGLYVAGMAVNAVHGLPRMGPIFGGMLLSGKKAAEEILEKLKL  261 (262)
T ss_pred             ccccccccCCCcchhhhHHHHHHHhc-ccc-ccCCeEeehhhHHhhcCCcccCchhhhhhhchHHHHHHHHHHhhc
Confidence               1121111111        22222 222 4799999998763     2344455444 7899999999988864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=2.2e-06  Score=85.52  Aligned_cols=51  Identities=24%  Similarity=0.225  Sum_probs=40.3

Q ss_pred             CCceeeCCCCCcCC------CCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTS------VPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~------~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+|.      .||+||+|+|++ ..       -.....|+..|+.|++++++++..
T Consensus       352 ~GGi~vd~-~~~t~~~~g~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~Gr~Ag~~aa~~~~~  416 (577)
T PRK06069        352 MGGIHTDV-YGRVLTADGEWVRGLWAAGEAAAVSVHGANRLGSNSTAECLVWGRIAGEQAAEYALK  416 (577)
T ss_pred             CCCceECC-CCcCcCCCCCEeCCeEeccccccccccccccchhhHHHHHHHHHHHHHHHHHHHhhc
Confidence            58888988 66777      899999999974 11       124567889999999999988764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.48  E-value=2.4e-06  Score=85.73  Aligned_cols=52  Identities=29%  Similarity=0.367  Sum_probs=41.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|.+.++|+.||+||+|+|++..       -.....|...|+.|++++++++.+
T Consensus       391 ~GGi~vd~~~~~t~IpGLYAaGE~agg~hGanrl~gnsl~~a~v~Gr~Ag~~aa~~~~~  449 (626)
T PRK07803        391 MGGVEVDPDTGAATVPGLFAAGECAGGMHGSNRLGGNSLSDLLVFGRRAGLGAADYVRG  449 (626)
T ss_pred             cCCEEEcCCCCeeecCCeeEccccccccCcCccccchhHHHHHHHHHHHHHHHHHHhhc
Confidence            5888999856678999999999987521       235668889999999999988754

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=98.48  E-value=2.5e-06  Score=85.09  Aligned_cols=51  Identities=29%  Similarity=0.255  Sum_probs=40.6

Q ss_pred             CCceeeCCCCCc----CCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTH----TSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~----t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+    |..||+||+|+|++ ..       -.....|+..|+.|++++++++..
T Consensus       342 ~GGi~id~-~~~v~~~t~I~GLyAaGe~a~~g~hGa~rl~g~sl~~a~v~G~~Ag~~aa~~~~~  404 (566)
T TIGR01812       342 MGGIPTDY-TGRVICETIVKGLFAAGECACVSVHGANRLGGNSLLELVVFGRIAGEAAAEYAAK  404 (566)
T ss_pred             CCCeEECc-CcccccCcccCCeeecccccccCcCcccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            57888887 556    89999999999874 21       135678999999999999998764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=98.47  E-value=3.7e-06  Score=84.32  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||+|.||+.||.++++.|.+|+|+||.
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae~G~~VilveK~   82 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSEHGFNTACITKL   82 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHhcCCcEEEEEcC
Confidence            4689999999999999999999999999999973

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=98.46  E-value=5e-06  Score=82.94  Aligned_cols=35  Identities=43%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ...+||+|||+|.+|+.+|..++++|.+|+|||+.
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~~g~~v~~iek~   44 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAWHGLKVIVVEKD   44 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            34689999999999999999999999999999963

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=98.46  E-value=4e-06  Score=81.17  Aligned_cols=57  Identities=18%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             ChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEec-CCcEEEE---ECCe---EEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFK-SRPFKVF---TDSK---SVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~-~~~~~v~---~~~~---~~~~d~lvlA~G~~~  174 (382)
                      +...+.+.+.+.+.+ .|++++.+ +|+++..+ ++.|.+.   ++.+   ++++|+||+|.|.+.
T Consensus       182 D~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~v~v~~t~~g~~~~i~Ad~VV~AAGawS  247 (497)
T PRK13339        182 NFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWEVTVKDRNTGEKREQVADYVFIGAGGGA  247 (497)
T ss_pred             CHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEEEEEEecCCCceEEEEcCEEEECCCcch
Confidence            344566666666644 48999888 79999877 6667765   3333   689999999999964

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=98.46  E-value=2e-06  Score=76.35  Aligned_cols=56  Identities=16%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEE---ecCCcEEEEECCeE-EEcCEEEEccCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVD---FKSRPFKVFTDSKS-VLADTVIVATGAV  173 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~---~~~~~~~v~~~~~~-~~~d~lvlA~G~~  173 (382)
                      .....+..++..++++|+.++.+ .|..+.   .++..+.+.|.++. +.++.+|+++|++
T Consensus       151 ~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaW  211 (399)
T KOG2820|consen  151 NAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAW  211 (399)
T ss_pred             eHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHH
Confidence            44667788899999999999988 466655   34445666665554 9999999999996

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=98.46  E-value=3.4e-06  Score=79.99  Aligned_cols=57  Identities=26%  Similarity=0.256  Sum_probs=41.1

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEE-e-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFT-E-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~-~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+.+.+...+.+.|...+. + .+..++.+.+.+.+.++++++.+|.||+|+|.+.
T Consensus       154 ~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~i~a~~vv~a~G~~~  212 (387)
T COG0665         154 DPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGTIEADKVVLAAGAWA  212 (387)
T ss_pred             CHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCccEEeCEEEEcCchHH
Confidence            3456667777777888854444 4 5667765324577888888899999999999863

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=98.43  E-value=4.6e-06  Score=83.55  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||+|.||+.||+++++.|.+|+|+||.
T Consensus        28 ~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~lveK~   61 (617)
T PTZ00139         28 HTYDAVVVGAGGAGLRAALGLVELGYKTACISKL   61 (617)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEecc
Confidence            4689999999999999999999999999999973

>PLN02815 L-aspartate oxidase

Probab=98.42  E-value=4.4e-06  Score=83.07  Aligned_cols=50  Identities=22%  Similarity=0.139  Sum_probs=38.9

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      -|.+.+|. ..+|+.||+||+|+|++ ..       -.....++..|+.|+..++.++.
T Consensus       377 ~GGi~vD~-~~~t~IpGLyAaGE~a~~G~hGanrl~gnsl~e~lvfGr~Ag~~aa~~~~  434 (594)
T PLN02815        377 CGGVRTGL-QGETNVQGLYAAGEVACTGLHGANRLASNSLLEALVFARRAVQPSIDHMA  434 (594)
T ss_pred             CCCeeECC-CCceecCCEEecccccccCCCCCCcchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            58889998 67799999999999873 21       12456788889999999887653

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=98.42  E-value=3.7e-07  Score=63.21  Aligned_cols=37  Identities=35%  Similarity=0.552  Sum_probs=32.2

Q ss_pred             EECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           63 IIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        63 IIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      |||||++|+++|+.|++.|++|+|+|    +...+||.+..
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E----~~~~~GG~~~~   37 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFE----KNDRLGGRARS   37 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEE----SSSSSSGGGCE
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEe----cCcccCcceeE
Confidence            89999999999999999999999999    66678887654

...

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=98.41  E-value=1.7e-06  Score=80.46  Aligned_cols=103  Identities=18%  Similarity=0.122  Sum_probs=81.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ...||++|+|..|+++|..|...+.+|++|++..                    ........+.+.+.++.++++.|+++
T Consensus       213 ~~~vV~vG~G~ig~Evaa~l~~~~~~VT~V~~e~--------------------~~~~~lf~~~i~~~~~~y~e~kgVk~  272 (478)
T KOG1336|consen  213 GGKVVCVGGGFIGMEVAAALVSKAKSVTVVFPEP--------------------WLLPRLFGPSIGQFYEDYYENKGVKF  272 (478)
T ss_pred             CceEEEECchHHHHHHHHHHHhcCceEEEEccCc--------------------cchhhhhhHHHHHHHHHHHHhcCeEE
Confidence            5679999999999999999999999999999421                    11112566788888999999999999


Q ss_pred             EEee-EEEEEecC--CcEEEEE-CCeEEEcCEEEEccCCCCcCCCCC
Q 016820          138 FTET-VSKVDFKS--RPFKVFT-DSKSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       138 ~~~~-v~~i~~~~--~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      +.++ +.+++.+.  +...+.. ++.++.+|.||+.+|.+|+...+.
T Consensus       273 ~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~t~~~~  319 (478)
T KOG1336|consen  273 YLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPNTSFLE  319 (478)
T ss_pred             EEecceeecccCCCCcEEEEEeccCCEeccCeEEEeecccccccccc
Confidence            9995 66776554  3333443 566799999999999999988665

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=98.41  E-value=2.8e-06  Score=81.53  Aligned_cols=93  Identities=22%  Similarity=0.237  Sum_probs=71.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHH--------------cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH
Q 016820           59 TKVCIIGSGPAAHTAAIYAAR--------------AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD  124 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~--------------~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  124 (382)
                      .+++|||||++|+++|..|+.              .+.+|+||++.        ..+        ++     ...+++.+
T Consensus       174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~--------~~l--------l~-----~~~~~~~~  232 (424)
T PTZ00318        174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAG--------SEV--------LG-----SFDQALRK  232 (424)
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCC--------Ccc--------cc-----cCCHHHHH
Confidence            489999999999999999976              36899999931        000        11     12356788


Q ss_pred             HHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          125 RCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       125 ~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                      .+++.+++.||+++.+ .+.+++.+  .+.+. ++.++.+|.+|+|+|..|+
T Consensus       233 ~~~~~L~~~gV~v~~~~~v~~v~~~--~v~~~-~g~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        233 YGQRRLRRLGVDIRTKTAVKEVLDK--EVVLK-DGEVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             HHHHHHHHCCCEEEeCCeEEEEeCC--EEEEC-CCCEEEccEEEEccCCCCc
Confidence            8888999999999988 68888743  34432 5667999999999999876

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.40  E-value=5.8e-06  Score=83.33  Aligned_cols=51  Identities=20%  Similarity=0.263  Sum_probs=40.0

Q ss_pred             CCceeeCCCCCcC-CCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHT-SVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t-~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      -|.|.+|. ..+| ..|++||+|+|++ ..       --+...++..|+.|++++++++.+
T Consensus       372 mGGi~vd~-~~~t~~I~GLyAaGE~a~~g~hGanrlggnsl~~~~v~G~iAg~~aa~~~~~  431 (657)
T PRK08626        372 MGGIRTNP-TGESYGLKGLFSAGEAACWDMHGFNRLGGNSLAETVVAGMIVGKYVADFCLG  431 (657)
T ss_pred             cCCceECC-CCCCcccCCEEecccccccCCCCCCccchHHHHHHHHHHHHHHHHHHHHhhc
Confidence            47899998 5677 5999999999874 11       124567889999999999998764

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.40  E-value=3.4e-06  Score=83.99  Aligned_cols=118  Identities=19%  Similarity=0.255  Sum_probs=72.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC---ccee---------------------cCC-----C
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG---GQLT---------------------TTS-----D  106 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g---g~~~---------------------~~~-----~  106 (382)
                      ..+.+|+|||||++|+++|..|++.|++|+|+|+........|   +.+.                     ...     .
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~~~~r~~G~~~~~I~L~pngl~aLe~LGl~~~e~l~~~g~~~~~~  158 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDLSAIRGEGKYRGPIQIQSNALAALEAIDIDVAEQVMEAGCITGDR  158 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccccccccccccCcccccCHHHHHHHHHcCcchHHHHHhhcCcccce
Confidence            3568999999999999999999999999999997531101111   0000                     000     0


Q ss_pred             c------------ccCCC--------CC--CCCChHHHHHHHHHHHHHcCcE-EEEe-eEEEEEecCCcEEEEECC-eEE
Q 016820          107 V------------ENFPG--------FP--QGILGGDLMDRCRNQSLRFGTQ-IFTE-TVSKVDFKSRPFKVFTDS-KSV  161 (382)
Q Consensus       107 ~------------~~~~~--------~~--~~~~~~~~~~~~~~~~~~~gi~-~~~~-~v~~i~~~~~~~~v~~~~-~~~  161 (382)
                      .            ..+..        .+  ..+...++.+.|.+   ..+.. ++.+ +|++++.+++.+++...+ .++
T Consensus       159 i~~~~d~~~G~~~~~~~~~~~~~~~g~p~~~~I~R~~L~~~L~~---alg~~~i~~g~~V~~I~~~~d~VtV~~~dG~ti  235 (668)
T PLN02927        159 INGLVDGISGSWYVKFDTFTPAASRGLPVTRVISRMTLQQILAR---AVGEDVIRNESNVVDFEDSGDKVTVVLENGQRY  235 (668)
T ss_pred             eeeeeecCCCceEeeccccccccccCCCeEEEEeHHHHHHHHHh---hCCCCEEEcCCEEEEEEEeCCEEEEEECCCCEE
Confidence            0            00000        00  01233444454433   33333 3445 799998888888777644 569


Q ss_pred             EcCEEEEccCCCCcC
Q 016820          162 LADTVIVATGAVAKK  176 (382)
Q Consensus       162 ~~d~lvlA~G~~~~~  176 (382)
                      .+|.||.|.|.++..
T Consensus       236 ~aDlVVGADG~~S~v  250 (668)
T PLN02927        236 EGDLLVGADGIWSKV  250 (668)
T ss_pred             EcCEEEECCCCCcHH
Confidence            999999999997644

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.40  E-value=1.1e-05  Score=78.81  Aligned_cols=61  Identities=11%  Similarity=0.174  Sum_probs=48.3

Q ss_pred             ccCCCcEEEcCceeEEEEecCCc-eeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDK-KVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g-~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      +...+++++.++.+.+|..++++ ..++++.+.+..+++..++.++.+|+|.|..-+..++-
T Consensus       224 ~~~~n~~l~~~a~v~~i~~d~~~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL  285 (544)
T TIGR02462       224 APSERFTLLTNHRCTRLVRNETNESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV  285 (544)
T ss_pred             ccCCCEEEEcCCEEEEEEeCCCCCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence            45677999999999999987654 45888888775456667899999999999887766553

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.39  E-value=8.3e-07  Score=91.20  Aligned_cols=106  Identities=21%  Similarity=0.247  Sum_probs=70.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCC---------C----------cccC-------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTS---------D----------VENF-------  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~---------~----------~~~~-------  110 (382)
                      ++|+|||||++|+++|+.|++.  |++|+|+|+..... ..|..+....         .          ...+       
T Consensus         1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~~-~~G~Gi~ls~~~l~~L~~~~~~~~~~~~~~~~~~~~~~~~~   79 (765)
T PRK08255          1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPYD-TFGWGVVFSDATLGNLRAADPVSAAAIGDAFNHWDDIDVHF   79 (765)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCCc-ccCcceEccHHHHHHHHhcCHHHHHHHHHhcccCCceEEEE
Confidence            4799999999999999999998  89999999753221 1221111000         0          0000       


Q ss_pred             -------CCCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820          111 -------PGFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       111 -------~~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~  176 (382)
                             .+.+ ..+...++.+.|.+.+.+.|++++.+ ++.+++.           ....+|.||.|+|.++..
T Consensus        80 ~g~~~~~~g~~~~~i~R~~L~~~L~e~a~~~GV~i~~g~~v~~i~~-----------~~~~~D~VVgADG~~S~v  143 (765)
T PRK08255         80 KGRRIRSGGHGFAGIGRKRLLNILQARCEELGVKLVFETEVPDDQA-----------LAADADLVIASDGLNSRI  143 (765)
T ss_pred             CCEEEEECCeeEecCCHHHHHHHHHHHHHHcCCEEEeCCccCchhh-----------hhcCCCEEEEcCCCCHHH
Confidence                   0000 13567889999999999999999888 4554431           124799999999987643

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.39  E-value=7.7e-06  Score=81.79  Aligned_cols=34  Identities=29%  Similarity=0.303  Sum_probs=31.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||||||+|.||++||+++++.|.+|+|+||.
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~~G~~V~lveK~   44 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAEAGLKTACITKV   44 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            5689999999999999999999999999999973

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.36  E-value=7.6e-06  Score=82.28  Aligned_cols=33  Identities=24%  Similarity=0.227  Sum_probs=31.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+||+|||+|.||++||.++++.|.+|+|+|+
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK   66 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGELGYNVKVFCY   66 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEec
Confidence            468999999999999999999999999999996

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.35  E-value=1.4e-06  Score=78.59  Aligned_cols=119  Identities=22%  Similarity=0.298  Sum_probs=76.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC-------CCCcceec------------------------C
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI-------APGGQLTT------------------------T  104 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~-------~~gg~~~~------------------------~  104 (382)
                      ....||+|||||.+|.++|+.|++.|.+|.+||+.....+       ++||....                        .
T Consensus        43 ~~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~EPdRivGEllQPGG~~~L~~LGl~Dcve~IDAQ~v~Gy~ifk~  122 (509)
T KOG1298|consen   43 DGAADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSEPDRIVGELLQPGGYLALSKLGLEDCVEGIDAQRVTGYAIFKD  122 (509)
T ss_pred             CCcccEEEECCcchHHHHHHHHhhCCcEEEEEecccccchHHHHHhcCcchhHHHHHhCHHHHhhcccceEeeeeEEEeC
Confidence            3568999999999999999999999999999997433322       33432110                        0


Q ss_pred             CC-------cccCCCCCCC--CChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcEE---EEEC-C--eEEEcCEEEE
Q 016820          105 SD-------VENFPGFPQG--ILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPFK---VFTD-S--KSVLADTVIV  168 (382)
Q Consensus       105 ~~-------~~~~~~~~~~--~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~~---v~~~-~--~~~~~d~lvl  168 (382)
                      ..       ..+++.-+.+  .....+.+.+++.+.. .++++..++|.++-.+++.+.   ...+ +  .+..+..-|+
T Consensus       123 gk~v~~pyP~~~f~~d~~GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~gvvkGV~yk~k~gee~~~~ApLTvV  202 (509)
T KOG1298|consen  123 GKEVDLPYPLKNFPSDPSGRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEEGVVKGVTYKNKEGEEVEAFAPLTVV  202 (509)
T ss_pred             CceeeccCCCcCCCCCcccceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhccCeEEeEEEecCCCceEEEecceEEE
Confidence            00       1111111111  1234577777776654 489999999998877766332   2222 2  2466888999


Q ss_pred             ccCCCC
Q 016820          169 ATGAVA  174 (382)
Q Consensus       169 A~G~~~  174 (382)
                      |.|+.+
T Consensus       203 CDGcfS  208 (509)
T KOG1298|consen  203 CDGCFS  208 (509)
T ss_pred             ecchhH
Confidence            999854

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.35  E-value=1.1e-05  Score=80.66  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=32.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ...+||||||+|.||+.||.++++.|.+|+||||.
T Consensus        10 ~~~~DVlVIG~G~AGl~AAi~Aa~~G~~V~vleK~   44 (591)
T PRK07057         10 RRKFDVVIVGAGGSGMRASLQLARAGLSVAVLSKV   44 (591)
T ss_pred             cccCCEEEECccHHHHHHHHHHHHCCCcEEEEecc
Confidence            35689999999999999999999999999999973

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=1.2e-05  Score=80.25  Aligned_cols=34  Identities=21%  Similarity=0.234  Sum_probs=31.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ...||||||+|.||+.||.++++.|.+|+|+||.
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lleK~   39 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQSGQSCALLSKV   39 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCcEEEEEcc
Confidence            3579999999999999999999999999999974

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.32  E-value=1.1e-05  Score=80.48  Aligned_cols=51  Identities=25%  Similarity=0.356  Sum_probs=41.4

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.||. ..+|+.||+||+|+|++..       -.+...|+..|+.|++++++++.+
T Consensus       355 ~GGi~vd~-~~~t~I~GLyAaGE~~~g~hGanrlggnsl~~~lv~Gr~Ag~~aa~~~~~  412 (589)
T PRK08641        355 MGGLWVDY-DQMTNIPGLFAAGECDYSYHGANRLGANSLLSAIYGGMVAGPNAVEYIKG  412 (589)
T ss_pred             CCCeEECC-CCCeECCCEEECcccccCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            58899998 5788999999999987421       235668899999999999988764

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=98.31  E-value=2e-06  Score=79.66  Aligned_cols=118  Identities=25%  Similarity=0.251  Sum_probs=75.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEec------ccCCCCCCCcc----ee-----------cCCCccc-----
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG------WMANDIAPGGQ----LT-----------TTSDVEN-----  109 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~------~~~~~~~~gg~----~~-----------~~~~~~~-----  109 (382)
                      ...+||||||||.||+++|...++.|.+.+|+..      ++.++...||.    ++           ..++...     
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~  105 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKV  105 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHH
Confidence            3568999999999999999999999999999985      33444445542    11           1111100     


Q ss_pred             --------CCCCCCCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCC---c--E--EEEECCeEEEcCEEEEccCCC
Q 016820          110 --------FPGFPQGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSR---P--F--KVFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       110 --------~~~~~~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~---~--~--~v~~~~~~~~~d~lvlA~G~~  173 (382)
                              .-+....++...+...+++.+.. .++.++.+.|.++...+.   .  +  .+..++..+.++.||+.||..
T Consensus       106 LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~dgt~v~a~~VilTTGTF  185 (679)
T KOG2311|consen  106 LNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVDGTVVYAESVILTTGTF  185 (679)
T ss_pred             hhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEecCcEeccceEEEeeccc
Confidence                    00111234556666677666543 367777787777643321   1  1  122366779999999999973

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.31  E-value=9.5e-07  Score=85.41  Aligned_cols=46  Identities=28%  Similarity=0.315  Sum_probs=41.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS  105 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~  105 (382)
                      ..+++|+|||||+|||+||++|...|++|+|+|    ..+.+||++....
T Consensus        13 ~~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLE----ARdRvGGRI~t~~   58 (501)
T KOG0029|consen   13 GKKKKVIVIGAGLAGLSAARQLQDFGFDVLVLE----ARDRVGGRIYTFK   58 (501)
T ss_pred             cCCCcEEEECCcHHHHHHHHHHHHcCCceEEEe----ccCCcCceeEEEe
Confidence            456899999999999999999999999999999    7789999887543

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.31  E-value=5.5e-06  Score=81.88  Aligned_cols=33  Identities=27%  Similarity=0.264  Sum_probs=29.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||||||+|.||++||+++++ |.+|+||||.
T Consensus         8 ~e~DVlVVG~G~AGl~AAi~A~~-G~~V~lieK~   40 (553)
T PRK07395          8 SQFDVLVVGSGAAGLYAALCLPS-HLRVGLITKD   40 (553)
T ss_pred             ccCCEEEECccHHHHHHHHHhhc-CCCEEEEEcc
Confidence            46899999999999999999964 9999999974

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.31  E-value=4.4e-06  Score=76.37  Aligned_cols=93  Identities=17%  Similarity=0.249  Sum_probs=73.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  241 (382)
                      ..|+|||+|+.|+-+|..+.+.|++|+++++.+.+.                                            
T Consensus         4 ~dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~ft~~d   83 (408)
T COG2081           4 FDVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARFTPED   83 (408)
T ss_pred             ceEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhCCHHH
Confidence            579999999999999999999999999999888760                                            


Q ss_pred             -----------------------------chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          242 -----------------------------ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       242 -----------------------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                                                   ....+ ...+++.||+++++++|..++.++.+     ..+..   .++.++
T Consensus        84 ~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~l-l~~~~~~gV~i~~~~~v~~v~~~~~~-----f~l~t---~~g~~i  154 (408)
T COG2081          84 FIDWVEGLGIALKEEDLGRMFPDSDKASPIVDAL-LKELEALGVTIRTRSRVSSVEKDDSG-----FRLDT---SSGETV  154 (408)
T ss_pred             HHHHHHhcCCeeEEccCceecCCccchHHHHHHH-HHHHHHcCcEEEecceEEeEEecCce-----EEEEc---CCCCEE
Confidence                                         00111 23467789999999999999999853     55554   333589


Q ss_pred             ecCeEEEeeCCCCCh
Q 016820          293 KVSGLFFAIGHEPAT  307 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~  307 (382)
                      .||.+|+|+|-...+
T Consensus       155 ~~d~lilAtGG~S~P  169 (408)
T COG2081         155 KCDSLILATGGKSWP  169 (408)
T ss_pred             EccEEEEecCCcCCC
Confidence            999999999966433

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.30  E-value=4.6e-06  Score=76.12  Aligned_cols=95  Identities=17%  Similarity=0.271  Sum_probs=70.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC------------Cc-c---------hHHHHHHhccCCCcEEEcCcee
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS------------FR-A---------SKIMQNRALTNPKIDVIWNSVV  264 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~------------~~-~---------~~~~~~~~l~~~gv~~~~~~~v  264 (382)
                      +++|||+|+.|+++|..|.+.|.+|+++++.+.            ++ .         ...+ ++.+++.|++++. ..+
T Consensus         2 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~gv~~~~-~~v   79 (300)
T TIGR01292         2 DVIIIGAGPAGLTAAIYAARANLKTLIIEGMEPGGQLTTTTEVENYPGFPEGISGPELMEKM-KEQAVKFGAEIIY-EEV   79 (300)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCcceeecccccccCCCCCCCChHHHHHHH-HHHHHHcCCeEEE-EEE
Confidence            589999999999999999999999999997541            01 0         1222 3456677999988 789


Q ss_pred             EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      ..++.+++.     +.+..   .++..+.+|.+++|+|..|+...+.
T Consensus        80 ~~v~~~~~~-----~~v~~---~~~~~~~~d~liiAtG~~~~~~~i~  118 (300)
T TIGR01292        80 IKVDLSDRP-----FKVKT---GDGKEYTAKAVIIATGASARKLGIP  118 (300)
T ss_pred             EEEEecCCe-----eEEEe---CCCCEEEeCEEEECCCCCcccCCCC
Confidence            999887642     33433   2235799999999999988755443

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=98.29  E-value=8.1e-06  Score=81.89  Aligned_cols=33  Identities=27%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++||+|||||..|+++|+.|++.|++|+|||+
T Consensus        70 ~~~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~  102 (627)
T PLN02464         70 EPLDVLVVGGGATGAGVALDAATRGLRVGLVER  102 (627)
T ss_pred             CccCEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence            458999999999999999999999999999997

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.29  E-value=1.7e-05  Score=78.54  Aligned_cols=32  Identities=25%  Similarity=0.392  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++||||||+| +|+++|..+++.|.+|+||||
T Consensus        15 ~e~DvvvvG~G-~G~~aA~~a~~~G~~v~v~Ek   46 (564)
T PRK12845         15 TTVDLLVVGSG-TGMAAALAAHELGLSVLIVEK   46 (564)
T ss_pred             ceeCEEEECCc-HHHHHHHHHHHCCCcEEEEec
Confidence            47899999999 899999999999999999996

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.27  E-value=1.9e-05  Score=78.81  Aligned_cols=57  Identities=18%  Similarity=0.229  Sum_probs=40.6

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC----CcE---EE-EE-CCe--EEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS----RPF---KV-FT-DSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~----~~~---~v-~~-~~~--~~~~d~lvlA~G~~~  174 (382)
                      ++..+...+.+.+.+.||+++.+ .+.++..++    +.+   .. .. ++.  .+.++.||+|||...
T Consensus       138 tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~  206 (583)
T PRK08205        138 TGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGGSG  206 (583)
T ss_pred             CHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCCCc
Confidence            34677888888888899999998 688876443    332   22 11 232  478999999999965

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=98.27  E-value=1.2e-05  Score=78.12  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=41.9

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEEEEE---C-C--eEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFKVFT---D-S--KSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~v~~---~-~--~~~~~d~lvlA~G~~~  174 (382)
                      +...+...+.+.+.+.|++++.+ +|+++..++ +.|.+.+   + +  .++++|+||+|+|.+.
T Consensus       176 dp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s  240 (483)
T TIGR01320       176 DFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGA  240 (483)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcch
Confidence            34566677777777889999988 799998754 3465542   1 2  2589999999999854

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=98.27  E-value=2e-05  Score=78.57  Aligned_cols=33  Identities=42%  Similarity=0.576  Sum_probs=31.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++||+|||+|.+|+.+|..+++.|.+|+|||+
T Consensus        15 ~~~dvvvvG~G~aG~~aa~~~~~~g~~v~l~ek   47 (578)
T PRK12843         15 AEFDVIVIGAGAAGMSAALFAAIAGLKVLLVER   47 (578)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEec
Confidence            367999999999999999999999999999996

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.26  E-value=9.8e-06  Score=79.59  Aligned_cols=51  Identities=24%  Similarity=0.239  Sum_probs=39.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .|.+.+|. ..+|+.|++||+|+|+. ..       -.....+...|+.++++++++...
T Consensus       341 ~GGi~vd~-~~~t~I~GLyAaGE~a~~G~hGanrl~gnsl~~~~v~G~~ag~~aa~~~~~  399 (513)
T PRK07512        341 MGGIAVDA-DGRSSLPGLWAAGEVASTGLHGANRLASNSLLEAVVFAARAAEDIAGTPAA  399 (513)
T ss_pred             cCCEEECC-CCccccCCEEecccccccCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            48889998 67799999999999862 11       224567788999999999888654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=98.23  E-value=3.5e-05  Score=71.77  Aligned_cols=46  Identities=26%  Similarity=0.297  Sum_probs=40.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS  105 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~  105 (382)
                      ....||+|||+|.+||.+|++|.+.|++|+|+|    .....||++....
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~kaG~~v~ilE----ar~r~GGR~~t~r   50 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKKAGYQVQILE----ARDRVGGRSLTAR   50 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhhcCcEEEEEe----ccCCcCceeEEEe
Confidence            356899999999999999999999999999999    6778888866443

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.23  E-value=8e-06  Score=80.39  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=67.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~  136 (382)
                      .++|+|||||+.|+++|..|++.+.+|++++..                    +..    ..   ...+.+.+++ .||+
T Consensus       352 ~k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~--------------------~~l----~~---~~~l~~~l~~~~gV~  404 (515)
T TIGR03140       352 GKDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFA--------------------DEL----KA---DKVLQDKLKSLPNVD  404 (515)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCcEEEEEEeC--------------------CcC----Ch---hHHHHHHHhcCCCCE
Confidence            469999999999999999999999999999931                    000    01   1233444444 5999


Q ss_pred             EEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccCCCCcCCCC
Q 016820          137 IFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ++.+ .+.++..+++.+   .+..  ++  .++.+|.|++|+|..|+..-+
T Consensus       405 i~~~~~v~~i~~~~~~v~~v~~~~~~~~~~~~i~~D~vi~a~G~~Pn~~~l  455 (515)
T TIGR03140       405 ILTSAQTTEIVGDGDKVTGIRYQDRNSGEEKQLDLDGVFVQIGLVPNTEWL  455 (515)
T ss_pred             EEECCeeEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEEEeCCcCCchHH
Confidence            9998 688887654432   2321  11  358999999999999976533

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=98.21  E-value=1.5e-05  Score=75.04  Aligned_cols=94  Identities=20%  Similarity=0.253  Sum_probs=69.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc----C--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA----E--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSL  131 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~----g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (382)
                      ..+|+|||+|++|+++|..|++.    |  .+|+|+..         ..+        +     .....++.+.+.+.++
T Consensus       145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~~---------~~~--------l-----~~~~~~~~~~~~~~l~  202 (364)
T TIGR03169       145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIAG---------ASL--------L-----PGFPAKVRRLVLRLLA  202 (364)
T ss_pred             CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEeC---------Ccc--------c-----ccCCHHHHHHHHHHHH
Confidence            35899999999999999999853    4  47888851         000        0     1123556778888889


Q ss_pred             HcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820          132 RFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       132 ~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +.||+++.+ ++..++.+  .+.+. ++.++.+|.+|+|+|.+|+.
T Consensus       203 ~~gV~v~~~~~v~~i~~~--~v~~~-~g~~i~~D~vi~a~G~~p~~  245 (364)
T TIGR03169       203 RRGIEVHEGAPVTRGPDG--ALILA-DGRTLPADAILWATGARAPP  245 (364)
T ss_pred             HCCCEEEeCCeeEEEcCC--eEEeC-CCCEEecCEEEEccCCChhh
Confidence            999999998 68888633  33332 56679999999999998863

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=98.20  E-value=2.8e-05  Score=75.78  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~   90 (382)
                      ..+||+|||||+.|+++|++|++.  |.+|+|+|+.
T Consensus         4 ~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~   39 (494)
T PRK05257          4 SKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERL   39 (494)
T ss_pred             ccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcC
Confidence            457999999999999999999985  7899999974

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.19  E-value=3.1e-05  Score=76.84  Aligned_cols=34  Identities=32%  Similarity=0.462  Sum_probs=31.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      .++||+|||+|.+|+++|..+++.|.+|+|||+.
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~   38 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQ   38 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            3689999999999999999999999999999963

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.18  E-value=3.5e-05  Score=76.83  Aligned_cols=34  Identities=32%  Similarity=0.399  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      .+.||||||+|.+|+++|+.+++.|.+|+|+||.
T Consensus        10 ~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~   43 (584)
T PRK12835         10 REVDVLVVGSGGGGMTAALTAAARGLDTLVVEKS   43 (584)
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcC
Confidence            4689999999999999999999999999999964

>PRK12839 hypothetical protein; Provisional

Probab=98.17  E-value=5e-05  Score=75.48  Aligned_cols=34  Identities=29%  Similarity=0.344  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||+|.+|+++|+.+++.|.+|+|||+.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~   40 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKA   40 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4689999999999999999999999999999963

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.16  E-value=2.3e-05  Score=75.35  Aligned_cols=33  Identities=33%  Similarity=0.267  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+||+|||||..|+.+|..++..|++|+|+|+
T Consensus        11 ~~~DviVIGGGitG~GiArDaA~RGl~v~LvE~   43 (532)
T COG0578          11 EEFDVIVIGGGITGAGIARDAAGRGLKVALVEK   43 (532)
T ss_pred             cCCCEEEECCchhhHHHHHHHHhCCCeEEEEec
Confidence            679999999999999999999999999999995

>KOG2495 consensus NADH-dehydrogenase (ubiquinone) [Energy production and conversion]

Probab=98.15  E-value=4e-06  Score=76.81  Aligned_cols=97  Identities=23%  Similarity=0.261  Sum_probs=72.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc--------------CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA--------------ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLM  123 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~--------------g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~  123 (382)
                      .-++|||||||.|+++|.+|+..              ..+|+|+|+.                    |.. .......+.
T Consensus       218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~--------------------d~i-L~mFdkrl~  276 (491)
T KOG2495|consen  218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAA--------------------DHI-LNMFDKRLV  276 (491)
T ss_pred             eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccc--------------------hhH-HHHHHHHHH
Confidence            36899999999999999999865              3789999931                    101 123457788


Q ss_pred             HHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCC
Q 016820          124 DRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       124 ~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~  177 (382)
                      +|.++.+.+.+|++..+ .|..++.+  .+.+.+.+   .++.|-.+|.|||..|+..
T Consensus       277 ~yae~~f~~~~I~~~~~t~Vk~V~~~--~I~~~~~~g~~~~iPYG~lVWatG~~~rp~  332 (491)
T KOG2495|consen  277 EYAENQFVRDGIDLDTGTMVKKVTEK--TIHAKTKDGEIEEIPYGLLVWATGNGPRPV  332 (491)
T ss_pred             HHHHHHhhhccceeecccEEEeecCc--EEEEEcCCCceeeecceEEEecCCCCCchh
Confidence            88888889999999999 57777643  34444432   3599999999999976543

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=98.15  E-value=1.4e-05  Score=74.76  Aligned_cols=95  Identities=22%  Similarity=0.159  Sum_probs=65.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+++|||+|+.|+++|..|.+.|.+ |+|+++..    .    .          ..+   ..    ....+.++++|++
T Consensus       172 g~~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~----~----~----------~~~---~~----~~~~~~l~~~gi~  226 (352)
T PRK12770        172 GKKVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRT----I----N----------EAP---AG----KYEIERLIARGVE  226 (352)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeecc----h----h----------hCC---CC----HHHHHHHHHcCCE
Confidence            36899999999999999999999997 99998310    0    0          000   11    2233446778999


Q ss_pred             EEEe-eEEEEEecCCcEEEE--------------------E-CCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVF--------------------T-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~--------------------~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.+++...+.                    . ++..+.+|.||+|+|.+|+..
T Consensus       227 i~~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~  289 (352)
T PRK12770        227 FLELVTPVRIIGEGRVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEIPTPP  289 (352)
T ss_pred             EeeccCceeeecCCcEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccCCCch
Confidence            9988 577776543311121                    1 124699999999999998653

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=98.14  E-value=4.5e-05  Score=75.06  Aligned_cols=33  Identities=33%  Similarity=0.338  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ...||||||+| +|+++|+++++.|.+|+||||.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~   38 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEAT   38 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecC
Confidence            36899999999 9999999999999999999974

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.11  E-value=4.9e-05  Score=81.66  Aligned_cols=36  Identities=36%  Similarity=0.438  Sum_probs=33.1

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      .+.+.||||||+|.||++||.++++.|.+|+|+||.
T Consensus       406 ~t~~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~  441 (1167)
T PTZ00306        406 GSLPARVIVVGGGLAGCSAAIEAASCGAQVILLEKE  441 (1167)
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHHCCCcEEEEEcc
Confidence            356799999999999999999999999999999963

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1e-05  Score=71.87  Aligned_cols=129  Identities=16%  Similarity=0.103  Sum_probs=90.4

Q ss_pred             ccccccccccccccccC-CCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC
Q 016820           27 IVTTSSAAAAASFSATT-APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS  105 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~  105 (382)
                      +++|.++.-+..+.... ..++++... ....+-+.+|||||+.+|+||-.|+-.|++|++.-+.               
T Consensus       167 IatG~RPrYp~IpG~~Ey~ITSDDlFs-l~~~PGkTLvVGa~YVaLECAgFL~gfg~~vtVmVRS---------------  230 (503)
T KOG4716|consen  167 IATGLRPRYPDIPGAKEYGITSDDLFS-LPYEPGKTLVVGAGYVALECAGFLKGFGYDVTVMVRS---------------  230 (503)
T ss_pred             EEecCCCCCCCCCCceeeeeccccccc-ccCCCCceEEEccceeeeehhhhHhhcCCCcEEEEEE---------------
Confidence            56888888777766553 344444333 3345568899999999999999999999999998741               


Q ss_pred             CcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEee-EEEEEecC-CcEEEEE------CCeEEEcCEEEEccCCCCcCC
Q 016820          106 DVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKS-RPFKVFT------DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~-v~~i~~~~-~~~~v~~------~~~~~~~d~lvlA~G~~~~~~  177 (382)
                             ++..-...++.+.+.+..+++|++|.... ...++..+ +.+.+.-      ++..-.||.|++|.|..+...
T Consensus       231 -------I~LrGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~~~~  303 (503)
T KOG4716|consen  231 -------ILLRGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKALTD  303 (503)
T ss_pred             -------eecccccHHHHHHHHHHHHHhCCceeecccceeeeeccCCcEEEEeecccccccccchhhhhhhhhccccchh
Confidence                   11223457888899999999999998873 44554433 3333321      223467999999999987554


Q ss_pred             C
Q 016820          178 Q  178 (382)
Q Consensus       178 ~  178 (382)
                      +
T Consensus       304 ~  304 (503)
T KOG4716|consen  304 D  304 (503)
T ss_pred             h
Confidence            3

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.08  E-value=8.4e-06  Score=69.70  Aligned_cols=104  Identities=24%  Similarity=0.349  Sum_probs=72.8

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----------------hH--------HHHHHhccCCCcEEEcCc
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------------SK--------IMQNRALTNPKIDVIWNS  262 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------------~~--------~~~~~~l~~~gv~~~~~~  262 (382)
                      +|+|||+|+.|+.+|..|.+.+.+++++...+....                ..        .+. +.+...+++++.++
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~   79 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSPGTPYNSGCIPSPLLVEIAPHRHEFLPARLFKLV-DQLKNRGVEIRLNA   79 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHGHHH-HHHHHHTHEEEHHH
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecccccccccccccccccccccccccccccccccccc-cccccceEEEeecc
Confidence            589999999999999999999999999976553200                00        111 12356799998899


Q ss_pred             eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      ++.+++.....-....+.+.....+++.++.+|.+++|+|..|....+.
T Consensus        80 ~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~~~~~i~  128 (201)
T PF07992_consen   80 KVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRPRTPNIP  128 (201)
T ss_dssp             TEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEEEEESST
T ss_pred             ccccccccccccccCcccceeeccCCceEecCCeeeecCccccceeecC
Confidence            9999988775100001222222235668899999999999998766444

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.07  E-value=2.2e-05  Score=67.27  Aligned_cols=92  Identities=20%  Similarity=0.317  Sum_probs=58.7

Q ss_pred             EEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCCcc-------------------------------h-------------
Q 016820          209 AVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFRA-------------------------------S-------------  243 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~~~-------------------------------~-------------  243 (382)
                      +|||+|+.|+-+|..|.+.|.+ ++++++.+.+..                               .             
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDFPS   80 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSSEB
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCcccCC
Confidence            6999999999999999999998 999998865500                               0             


Q ss_pred             ----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC--CCChh
Q 016820          244 ----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH--EPATK  308 (382)
Q Consensus       244 ----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~--~p~~~  308 (382)
                          ....+...++.+++++++++|+++..++++     ..+..   .++..+.+|.||+|+|.  .|..+
T Consensus        81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-----w~v~~---~~~~~~~a~~VVlAtG~~~~p~~p  143 (203)
T PF13738_consen   81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-----WTVTT---RDGRTIRADRVVLATGHYSHPRIP  143 (203)
T ss_dssp             HHHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-----EEEEE---TTS-EEEEEEEEE---SSCSB---
T ss_pred             HHHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-----EEEEE---EecceeeeeeEEEeeeccCCCCcc
Confidence                011234456678889999999999999875     44444   22257889999999997  45444

...

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.07  E-value=5.2e-05  Score=73.61  Aligned_cols=95  Identities=19%  Similarity=0.141  Sum_probs=66.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...+|+|||+|..|+.+|..|.+.|. +|+++++..               ...++.     . ..    ..+.+.+.||
T Consensus       272 ~g~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~---------------~~~~~~-----~-~~----~~~~~~~~GV  326 (457)
T PRK11749        272 VGKRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRG---------------REEMPA-----S-EE----EVEHAKEEGV  326 (457)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCCC-----C-HH----HHHHHHHCCC
Confidence            35799999999999999999999998 899998310               001111     1 11    2344577899


Q ss_pred             EEEEe-eEEEEEecCCc---EEEEE------------------CCeEEEcCEEEEccCCCCcC
Q 016820          136 QIFTE-TVSKVDFKSRP---FKVFT------------------DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~---~~v~~------------------~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +++.+ .+..+..+++.   +.+..                  +..++.+|.||+|+|..|+.
T Consensus       327 ~i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~~p~~  389 (457)
T PRK11749        327 EFEWLAAPVEILGDEGRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQTPNP  389 (457)
T ss_pred             EEEecCCcEEEEecCCceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccCCCCc
Confidence            99988 57777665533   33321                  22359999999999999874

>PRK07208 hypothetical protein; Provisional

Probab=98.07  E-value=1.1e-05  Score=78.92  Aligned_cols=43  Identities=37%  Similarity=0.416  Sum_probs=38.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||+|||||++||++|+.|++.|++|+|+|    +...+||.+..
T Consensus         3 ~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E----~~~~~GG~~~s   45 (479)
T PRK07208          3 NKKSVVIIGAGPAGLTAAYELLKRGYPVTVLE----ADPVVGGISRT   45 (479)
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEe----cCCCCCceeee
Confidence            45799999999999999999999999999999    56678887654

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.03  E-value=5.6e-06  Score=80.75  Aligned_cols=43  Identities=35%  Similarity=0.409  Sum_probs=38.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||||||||+.||.+|..|+++|++|+|+|    +...+||....
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE----~~~~~GG~a~t   44 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLE----KNDRVGGRART   44 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHhCCCEEEEEE----ecCCCCcceEE
Confidence            35899999999999999999999999999999    66678886553

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=6.1e-06  Score=78.06  Aligned_cols=44  Identities=32%  Similarity=0.379  Sum_probs=39.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD  106 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~  106 (382)
                      ++|+|+|||.|||++|++|++.|++|+|+|    ..+..||.+....+
T Consensus         1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~e----a~~~~GGk~~s~~~   44 (485)
T COG3349           1 MRVAIAGAGLAGLAAAYELADAGYDVTLYE----ARDRLGGKVASWRD   44 (485)
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCceEEEe----ccCccCceeeeeec
Confidence            479999999999999999999999999999    77888988765443

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=98.02  E-value=3.2e-05  Score=73.29  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=59.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------------------------------  241 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------------------------------  241 (382)
                      +|+|||+|++|+-+|..+++.|.+|+++++++.+.                                             
T Consensus         2 dviIIGgGaAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~~~d   81 (409)
T PF03486_consen    2 DVIIIGGGAAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFSPED   81 (409)
T ss_dssp             SEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-HHH
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCCHHH
Confidence            58999999999999999999999999999998770                                             


Q ss_pred             ----------------------ch---H---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe
Q 016820          242 ----------------------AS---K---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK  293 (382)
Q Consensus       242 ----------------------~~---~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~  293 (382)
                                            .+   .   ..+.+.+++.||+++++++|.++..++++  +..|+.     .+...+.
T Consensus        82 ~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~--~f~v~~-----~~~~~~~  154 (409)
T PF03486_consen   82 LIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDG--VFGVKT-----KNGGEYE  154 (409)
T ss_dssp             HHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTE--EEEEEE-----TTTEEEE
T ss_pred             HHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCc--eeEeec-----cCccccc
Confidence                                  00   0   11123356689999999999999987764  233333     2336899


Q ss_pred             cCeEEEeeCCCCCh
Q 016820          294 VSGLFFAIGHEPAT  307 (382)
Q Consensus       294 ~D~vi~~~G~~p~~  307 (382)
                      +|.||+|+|..+.+
T Consensus       155 a~~vILAtGG~S~p  168 (409)
T PF03486_consen  155 ADAVILATGGKSYP  168 (409)
T ss_dssp             ESEEEE----SSSG
T ss_pred             CCEEEEecCCCCcc
Confidence            99999999987643

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.02  E-value=3.4e-05  Score=74.61  Aligned_cols=95  Identities=20%  Similarity=0.123  Sum_probs=64.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||||..|+.+|..|.++|.+|+++++...               ..++      ....    ..+.+.+.||++
T Consensus       272 gk~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~---------------~~~~------~~~~----~~~~l~~~GV~~  326 (449)
T TIGR01316       272 GKSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR---------------EDMT------ARVE----EIAHAEEEGVKF  326 (449)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc---------------ccCC------CCHH----HHHHHHhCCCEE
Confidence            47899999999999999999999999999984200               0011      1111    223456779999


Q ss_pred             EEe-eEEEEEec-CCcE---EEE------------------EC-CeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFK-SRPF---KVF------------------TD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~-~~~~---~v~------------------~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.++..+ ++.+   .+.                  .+ ..++.+|.||+|+|..|+..
T Consensus       327 ~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~~p~~~  390 (449)
T TIGR01316       327 HFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGNGSNPI  390 (449)
T ss_pred             EeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCCCCCch
Confidence            877 56676543 2222   221                  01 12599999999999998764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.00  E-value=3.8e-05  Score=75.70  Aligned_cols=95  Identities=17%  Similarity=0.104  Sum_probs=67.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi~  136 (382)
                      .++|+|||||..|+++|..|+..+.+|+|+++.    .                ..   ..    ...+.+.+.+ .||+
T Consensus       351 gk~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~----~----------------~l---~~----~~~l~~~l~~~~gI~  403 (517)
T PRK15317        351 GKRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFA----P----------------EL---KA----DQVLQDKLRSLPNVT  403 (517)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCEEEEEEEC----c----------------cc---cc----cHHHHHHHhcCCCcE
Confidence            468999999999999999999999999999931    0                00   00    1233444444 5999


Q ss_pred             EEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccCCCCcCCCC
Q 016820          137 IFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ++.+ .+.++..+++.+   .+..  ++  .++.+|.+++|+|..|+...+
T Consensus       404 i~~~~~v~~i~~~~g~v~~v~~~~~~~g~~~~i~~D~v~~~~G~~p~~~~l  454 (517)
T PRK15317        404 IITNAQTTEVTGDGDKVTGLTYKDRTTGEEHHLELEGVFVQIGLVPNTEWL  454 (517)
T ss_pred             EEECcEEEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeECCccCchHH
Confidence            9998 688887664433   2221  12  359999999999999976533

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=98.00  E-value=7.8e-06  Score=79.25  Aligned_cols=42  Identities=31%  Similarity=0.381  Sum_probs=37.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++|+|||||++||+||+.|++.|  ++|+|+|    ....+||++...
T Consensus         1 ~~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlE----a~~~~GGr~~t~   44 (451)
T PRK11883          1 KKVAIIGGGITGLSAAYRLHKKGPDADITLLE----ASDRLGGKIQTV   44 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCCCCCEEEEE----cCCCCcceEEEE
Confidence            47999999999999999999988  8999999    667889987653

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=97.99  E-value=7.8e-05  Score=71.87  Aligned_cols=56  Identities=16%  Similarity=0.325  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEec--CCcEE-EEE--CCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK--SRPFK-VFT--DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~--~~~~~-v~~--~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+.+.+.+.+++.|++++.+ +|+++..+  ++.+. +..  +...+.++.||+|+|...
T Consensus       122 g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~~  183 (432)
T TIGR02485       122 GKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGLG  183 (432)
T ss_pred             HHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCcc
Confidence            3567788888889999999998 68888765  33332 232  234689999999999743

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>PLN02268 probable polyamine oxidase

Probab=97.97  E-value=9.5e-06  Score=78.29  Aligned_cols=42  Identities=33%  Similarity=0.375  Sum_probs=38.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      .+|+|||||.+||++|+.|.+.|++|+|+|    ....+||++...
T Consensus         1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlE----a~~r~GGri~t~   42 (435)
T PLN02268          1 PSVIVIGGGIAGIAAARALHDASFKVTLLE----SRDRIGGRVHTD   42 (435)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEe----CCCCCCceeeec
Confidence            479999999999999999999999999999    677889988753

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.97  E-value=2.8e-05  Score=76.01  Aligned_cols=80  Identities=11%  Similarity=0.038  Sum_probs=59.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||+|.+|+++|..|+++|++|+++|+.                            ..+....+.+.+++.|+++
T Consensus        16 ~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~----------------------------~~~~~~~~~~~l~~~gv~~   67 (480)
T PRK01438         16 GLRVVVAGLGVSGFAAADALLELGARVTVVDDG----------------------------DDERHRALAAILEALGATV   67 (480)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC----------------------------chhhhHHHHHHHHHcCCEE
Confidence            458999999999999999999999999999931                            0122334445567779998


Q ss_pred             EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820          138 FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      +.+....              ....+|.||+++|..|+.|.+
T Consensus        68 ~~~~~~~--------------~~~~~D~Vv~s~Gi~~~~~~~   95 (480)
T PRK01438         68 RLGPGPT--------------LPEDTDLVVTSPGWRPDAPLL   95 (480)
T ss_pred             EECCCcc--------------ccCCCCEEEECCCcCCCCHHH
Confidence            8764111              013589999999999988743

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=97.95  E-value=0.0002  Score=67.10  Aligned_cols=55  Identities=18%  Similarity=0.222  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCc-EEEEE------CCeEEEcCEEEEccCCC
Q 016820          119 GGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRP-FKVFT------DSKSVLADTVIVATGAV  173 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~-~~v~~------~~~~~~~d~lvlA~G~~  173 (382)
                      ...+.+.+.+.+.+. ++++..+ +|++|...++. |.|..      +..++++++|++..|..
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG~  243 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGGG  243 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCchH
Confidence            345566666666665 8999888 89999988665 88875      23569999999999984

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=97.94  E-value=6.7e-05  Score=73.06  Aligned_cols=105  Identities=15%  Similarity=0.103  Sum_probs=64.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..++|+|||+|..|+.+|..+.++|. +|++++..    ..+.....   .....+.++     .   ....+.+.+.|+
T Consensus       280 ~gk~VvVIGgG~~g~e~A~~~~~~ga~~Vt~~~~~----~~~~~~~~---~~~~~~~~~-----~---~~~~~~~~~~GV  344 (471)
T PRK12810        280 KGKHVVVIGGGDTGMDCVGTAIRQGAKSVTQRDIM----PMPPSRRN---KNNPWPYWP-----M---KLEVSNAHEEGV  344 (471)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEcccc----CCCccccc---cccCCcccc-----h---HHHHHHHHHcCC
Confidence            35789999999999999999999986 68877621    00000000   000000010     0   112344567799


Q ss_pred             EEEEe-eEEEEEecCCcEE-EE-----E----------CCeEEEcCEEEEccCCCCcC
Q 016820          136 QIFTE-TVSKVDFKSRPFK-VF-----T----------DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~-v~-----~----------~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +++.+ .+++|..+++.++ +.     .          +..++.+|.||+|+|..|+.
T Consensus       345 ~i~~~~~~~~i~~~~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~~p~~  402 (471)
T PRK12810        345 EREFNVQTKEFEGENGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGFTGPE  402 (471)
T ss_pred             eEEeccCceEEEccCCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCcCCCc
Confidence            99888 5777764444332 21     1          11459999999999998864

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=97.93  E-value=5.3e-05  Score=69.63  Aligned_cols=32  Identities=25%  Similarity=0.447  Sum_probs=30.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +.+|+|||||.+|+++|..|+++|++|+|+|+
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~   33 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHRKGIDVVVLES   33 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCeEEEEee
Confidence            46899999999999999999999999999996

>PLN02576 protoporphyrinogen oxidase

Probab=97.91  E-value=1.9e-05  Score=77.65  Aligned_cols=44  Identities=23%  Similarity=0.334  Sum_probs=38.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcceecC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ..+||+|||||++||++|+.|++. |++|+|+|    +...+||.+...
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlE----a~~rvGGr~~t~   55 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTE----ARDRVGGNITSV   55 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCCceeEe
Confidence            346899999999999999999999 99999999    667888887654

>PRK12831 putative oxidoreductase; Provisional

Probab=97.89  E-value=0.00013  Score=70.75  Aligned_cols=96  Identities=19%  Similarity=0.131  Sum_probs=63.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||..|+.+|..|.++|.+|+|+++..                  ....+.  ...++     +.+.+.|++
T Consensus       280 ~gk~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~------------------~~~m~a--~~~e~-----~~a~~eGV~  334 (464)
T PRK12831        280 VGKKVAVVGGGNVAMDAARTALRLGAEVHIVYRRS------------------EEELPA--RVEEV-----HHAKEEGVI  334 (464)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCEEEEEeecC------------------cccCCC--CHHHH-----HHHHHcCCE
Confidence            35799999999999999999999999999998410                  011111  11121     224567999


Q ss_pred             EEEe-eEEEEEecC-CcE---EEE---E--------------CC--eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKS-RPF---KVF---T--------------DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~-~~~---~v~---~--------------~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.. .+..+..++ +.+   .+.   .              ++  ..+.+|.||+|+|..|+..
T Consensus       335 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~~p~~~  399 (464)
T PRK12831        335 FDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGTSPNPL  399 (464)
T ss_pred             EEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCCCCChh
Confidence            9877 466665432 222   111   0              11  2599999999999998764

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=97.89  E-value=7.1e-05  Score=67.04  Aligned_cols=42  Identities=36%  Similarity=0.487  Sum_probs=36.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ...+|+|||+|++||+||..|.+. ++|+|+|    .+...||+...
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfE----A~~rlGGha~T   48 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSRR-HDVTLFE----ADRRLGGHANT   48 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhcc-cceEEEe----ccccccCccce
Confidence            457999999999999999999887 8999999    66778877554

>PRK07233 hypothetical protein; Provisional

Probab=97.88  E-value=1.7e-05  Score=76.48  Aligned_cols=40  Identities=33%  Similarity=0.428  Sum_probs=36.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +|+|||||++||++|+.|++.|++|+|+|    +...+||.+..
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE----~~~~~GG~~~s   40 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFE----ADDQLGGLAAS   40 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEE----eCCCCCCceee
Confidence            58999999999999999999999999999    66678887654

>PRK06847 hypothetical protein; Provisional

Probab=97.88  E-value=0.00011  Score=69.36  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=68.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      .++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..                                          
T Consensus         4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~~~~~~g~g~~l~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~g~   83 (375)
T PRK06847          4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDPEWRVYGAGITLQGNALRALRELGVLDECLEAGFGFDGVDLFDPDGT   83 (375)
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCccCCceeeecHHHHHHHHHcCCHHHHHHhCCCccceEEECCCCC
Confidence            46899999999999999999999999999987764200                                          


Q ss_pred             ------h----------------HH---HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          243 ------S----------------KI---MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       243 ------~----------------~~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                            .                ..   .+.+.+.+.|++++.++++.+++.++++     +.+..   .++.++.+|.|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----~~v~~---~~g~~~~ad~v  155 (375)
T PRK06847         84 LLAELPTPRLAGDDLPGGGGIMRPALARILADAARAAGADVRLGTTVTAIEQDDDG-----VTVTF---SDGTTGRYDLV  155 (375)
T ss_pred             EEEecCcccccccCCCCcccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCE-----EEEEE---cCCCEEEcCEE
Confidence                  0                00   0112233468899999999999876653     33333   12256899999


Q ss_pred             EEeeCCCCCh
Q 016820          298 FFAIGHEPAT  307 (382)
Q Consensus       298 i~~~G~~p~~  307 (382)
                      |.|.|..+..
T Consensus       156 I~AdG~~s~~  165 (375)
T PRK06847        156 VGADGLYSKV  165 (375)
T ss_pred             EECcCCCcch
Confidence            9999987644

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.88  E-value=1.7e-05  Score=77.13  Aligned_cols=43  Identities=33%  Similarity=0.468  Sum_probs=38.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc----CCCeEEEecccCCCCCCCcceecC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++||+|||||++||++|+.|++.    |++|+|+|    +...+||.+...
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE----~~~r~GG~~~t~   48 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVE----ASDRVGGKIQTV   48 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEE----cCCcCcceEEEE
Confidence            36899999999999999999999    99999999    667888887653

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=97.86  E-value=0.00027  Score=65.79  Aligned_cols=47  Identities=30%  Similarity=0.291  Sum_probs=41.8

Q ss_pred             ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       321 ~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      .+.+|++ ++|+.+|+|++||+++. .+.+..|..+|-.+|+.|+.+..
T Consensus       438 ri~~d~~-~~t~i~gLy~aGdGAG~-argI~~Aaa~Gi~~A~~i~~k~~  484 (486)
T COG2509         438 RIKVDED-LSTSIKGLYPAGDGAGL-ARGIVSAAADGIKAAEGIARKYG  484 (486)
T ss_pred             eEeeccc-ceeeecceEEccccccc-cchhHHHhhhhHHHHHHHHHHhc
Confidence            5788884 99999999999999984 68999999999999999998754

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.84  E-value=4.6e-05  Score=67.57  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=53.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc------ccCCCCCCCCChHHHHHHHHHHHHH
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV------ENFPGFPQGILGGDLMDRCRNQSLR  132 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
                      +|++|||+|.+|+.+|..|+++|.+|.|||    +...+||.+....+-      |.+...-.+-+...+.+++....+-
T Consensus         2 fd~lIVGaGlsG~V~A~~a~~~gk~VLIve----kR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~~F~e~   77 (374)
T COG0562           2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVE----KRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVNQFTEF   77 (374)
T ss_pred             CcEEEECCchhHHHHHHHHHHcCCEEEEEe----ccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHhhhhhh
Confidence            689999999999999999999999999999    566888877654332      2332222344667888888877654


Q ss_pred             c
Q 016820          133 F  133 (382)
Q Consensus       133 ~  133 (382)
                      .
T Consensus        78 ~   78 (374)
T COG0562          78 N   78 (374)
T ss_pred             h
Confidence            3

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.84  E-value=0.00011  Score=72.98  Aligned_cols=96  Identities=16%  Similarity=0.087  Sum_probs=63.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||||+.|+++|..|++.|.+|+++++..                    .+   .....+.   .+.....|++
T Consensus       142 ~g~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~--------------------~~---~~~~~~~---~~~~~~~gV~  195 (555)
T TIGR03143       142 TGMDVFVIGGGFAAAEEAVFLTRYASKVTVIVREP--------------------DF---TCAKLIA---EKVKNHPKIE  195 (555)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHccCCEEEEEEeCC--------------------cc---ccCHHHH---HHHHhCCCcE
Confidence            35789999999999999999999999999999410                    00   0011222   2223446999


Q ss_pred             EEEe-eEEEEEecCCc--EEEEE--CCeE--E--EcCE----EEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP--FKVFT--DSKS--V--LADT----VIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~--~~v~~--~~~~--~--~~d~----lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++.++..  +.+..  ++..  +  .+|.    |++|+|..|+..-
T Consensus       196 i~~~~~V~~i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn~~l  250 (555)
T TIGR03143       196 VKFNTELKEATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPSSEL  250 (555)
T ss_pred             EEeCCEEEEEEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCChhH
Confidence            9988 68888754432  11111  2332  2  3566    9999999997753

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=97.84  E-value=0.00013  Score=71.69  Aligned_cols=100  Identities=21%  Similarity=0.253  Sum_probs=63.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      .|+|+|||+|.+|+-.+..|.+.|.+++++++.+.+..                                          
T Consensus         1 ~krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~f   80 (531)
T PF00743_consen    1 AKRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPDF   80 (531)
T ss_dssp             --EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSSS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCCC
Confidence            37999999999999999999999999999998886610                                          


Q ss_pred             --hH---HHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          243 --SK---IMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       243 --~~---~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                        ..   ..++.+.+..++  .+.++++|.+++..++......-.+....++...+-.+|.|++|+|.-
T Consensus        81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~  149 (531)
T PF00743_consen   81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHF  149 (531)
T ss_dssp             EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SS
T ss_pred             CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCc
Confidence              01   111233333443  577899999998765421111133333334444566799999999985

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=97.82  E-value=0.0002  Score=63.98  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc----CCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA----ELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~----g~~v~lie~~   90 (382)
                      ...||+|||||..|.+.|+.|++.    |++|+++|+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErd  122 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERD  122 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEecc
Confidence            468999999999999999999887    7999999973

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.81  E-value=2.4e-05  Score=76.77  Aligned_cols=41  Identities=39%  Similarity=0.516  Sum_probs=36.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +||+|||||++||++|..|++.|++|+|+|    +...+||....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE----~~~~~GG~~~t   42 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLE----QHAQPGGCAGT   42 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCccce
Confidence            689999999999999999999999999999    56677776543

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=97.81  E-value=2.6e-05  Score=73.92  Aligned_cols=42  Identities=40%  Similarity=0.510  Sum_probs=37.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++|+|||||++||++|++|++.+  ++++|+|    .+...||.+...
T Consensus         1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE----~~~r~GG~l~T~   44 (444)
T COG1232           1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFE----ADDRVGGLLRTV   44 (444)
T ss_pred             CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEe----cCCCCCceEEEE
Confidence            47999999999999999999999  9999999    677899987753

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.80  E-value=2.8e-05  Score=72.68  Aligned_cols=41  Identities=20%  Similarity=0.218  Sum_probs=35.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +||+|||||++|+++|..|++.|.+|+|+|    +....||.+..
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viE----k~~~iGG~~~~   42 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVE----KRNHIGGNCYD   42 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEe----cCCCCCCceee
Confidence            689999999999999999999999999999    45567776543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=97.80  E-value=0.00056  Score=66.19  Aligned_cols=134  Identities=19%  Similarity=0.238  Sum_probs=82.1

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------------------------------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------------------------------  241 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------------  241 (382)
                      ..++|+|||+|++|+-.|..|.+.|.+|+++++++.+.                                          
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~m~f   88 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPRECMGY   88 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhhccC
Confidence            46899999999999999999999999999888765330                                          


Q ss_pred             --------------------chHHH---HHHhccCCCcE--EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          242 --------------------ASKIM---QNRALTNPKID--VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       242 --------------------~~~~~---~~~~l~~~gv~--~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                                          ....+   ++...+..|++  +.++++|.+++..+++   ..|...+. .+...+..+|.
T Consensus        89 ~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~---w~V~~~~~-~~~~~~~~~d~  164 (461)
T PLN02172         89 RDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGK---WRVQSKNS-GGFSKDEIFDA  164 (461)
T ss_pred             CCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCe---EEEEEEcC-CCceEEEEcCE
Confidence                                00111   12223345666  7789999999886542   22443321 12223568999


Q ss_pred             EEEeeC--CCCChhhhcccccccCCCceeeCCCCCcC----CCCceEEecccCC
Q 016820          297 LFFAIG--HEPATKFVDGQLDLHSDGYIITKPGTTHT----SVPGVFAAGDVQD  344 (382)
Q Consensus       297 vi~~~G--~~p~~~~~~~~~~~~~~g~i~vd~~~~~t----~~~~vya~GD~~~  344 (382)
                      ||+|+|  ..|+.+.+. ++..- .|.+.-- +.++.    ..++|-++|-...
T Consensus       165 VIvAtG~~~~P~~P~ip-G~~~f-~G~~iHs-~~yr~~~~~~gk~VvVVG~G~S  215 (461)
T PLN02172        165 VVVCNGHYTEPNVAHIP-GIKSW-PGKQIHS-HNYRVPDPFKNEVVVVIGNFAS  215 (461)
T ss_pred             EEEeccCCCCCcCCCCC-CcccC-CceEEEe-cccCCccccCCCEEEEECCCcC
Confidence            999999  456655443 33110 1211111 11221    3577999987653

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=97.78  E-value=0.00034  Score=62.45  Aligned_cols=34  Identities=26%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ...||+|||+|.+|+-+|.+|+..|.+|+++|++
T Consensus         4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQE   37 (552)
T COG3573           4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQE   37 (552)
T ss_pred             ccccEEEECccHHHHHHHHHHHhcCceEEEEccc
Confidence            4689999999999999999999999999999975

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.77  E-value=0.00022  Score=67.91  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCccc
Confidence            568999999999999999999999999999987654

>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]

Probab=97.77  E-value=7.2e-05  Score=68.44  Aligned_cols=99  Identities=19%  Similarity=0.144  Sum_probs=74.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc----CCCeEEE-ecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA----ELKPILF-EGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR  132 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~----g~~v~li-e~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
                      +..|.|||+|+.|.++|+.|.+.    |.+|.-+ +.                   +  +....+.++.+.++-.+..++
T Consensus       347 k~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~E-------------------k--~nm~kiLPeyls~wt~ekir~  405 (659)
T KOG1346|consen  347 KQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEE-------------------K--YNMEKILPEYLSQWTIEKIRK  405 (659)
T ss_pred             cceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecc-------------------c--CChhhhhHHHHHHHHHHHHHh
Confidence            47899999999999999999886    4444322 20                   0  111234456677777778888


Q ss_pred             cCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820          133 FGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       133 ~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      -|++++.+ .|.++....+.+.+..+ +.+++.|.||+|+|..|+..
T Consensus       406 ~GV~V~pna~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN~e  452 (659)
T KOG1346|consen  406 GGVDVRPNAKVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPNSE  452 (659)
T ss_pred             cCceeccchhhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCchh
Confidence            89999988 68888877777777664 55699999999999999875

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.77  E-value=0.00033  Score=67.13  Aligned_cols=97  Identities=19%  Similarity=0.265  Sum_probs=67.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++++.+..                                          
T Consensus        18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~   97 (415)
T PRK07364         18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAEAAAAKGQAYALSLLSARIFEGIGVWEKILPQIGKFRQIRLSDAD   97 (415)
T ss_pred             ccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCccccCCCCcEEEechHHHHHHHHCChhhhhHhhcCCccEEEEEeCC
Confidence            46799999999999999999999999999997764300                                          


Q ss_pred             ----------------------hHHHHH---HhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          243 ----------------------SKIMQN---RALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       243 ----------------------~~~~~~---~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                                            ...+.+   +.+.+ .+++++.++++.+++.++++   ..+++.+  .++..++.+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~~~---~~v~~~~--~~~~~~i~adl  172 (415)
T PRK07364         98 YPGVVKFQPTDLGTEALGYVGEHQVLLEALQEFLQSCPNITWLCPAEVVSVEYQQDA---ATVTLEI--EGKQQTLQSKL  172 (415)
T ss_pred             CCceeeeccccCCCCccEEEEecHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCCe---eEEEEcc--CCcceEEeeeE
Confidence                                  000011   11222 47888888999998776653   1244432  23235799999


Q ss_pred             EEEeeCCCCC
Q 016820          297 LFFAIGHEPA  306 (382)
Q Consensus       297 vi~~~G~~p~  306 (382)
                      ||.|.|....
T Consensus       173 vIgADG~~S~  182 (415)
T PRK07364        173 VVAADGARSP  182 (415)
T ss_pred             EEEeCCCCch
Confidence            9999997654

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=97.76  E-value=3.2e-05  Score=75.28  Aligned_cols=42  Identities=26%  Similarity=0.503  Sum_probs=36.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc------CCCeEEEecccCCCCCCCcceecC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA------ELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++|+|||||++||++|+.|++.      |++|+|+|    ....+||.+...
T Consensus         2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlE----a~~r~GGr~~T~   49 (463)
T PRK12416          2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVE----KEEYLGGKIHSV   49 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEe----cCCCccceEEEE
Confidence            4799999999999999999986      38999999    667889987754

>PLN02568 polyamine oxidase

Probab=97.76  E-value=3.7e-05  Score=75.68  Aligned_cols=43  Identities=30%  Similarity=0.372  Sum_probs=37.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-----CCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-----LKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +.+||+|||||++|+++|+.|++.|     ++|+|+|    +...+||.+..
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E----~~~~~GGr~~t   51 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVE----GGDRIGGRINT   51 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEe----CCCCcCCeEEE
Confidence            3579999999999999999999987     8999999    56678887654

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=97.76  E-value=0.00018  Score=62.89  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC------CCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE------LKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g------~~v~lie~   89 (382)
                      ..++|+|||||..|+.+|+.|.+++      .+|+|+|+
T Consensus         9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs   47 (380)
T KOG2852|consen    9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFES   47 (380)
T ss_pred             CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEee
Confidence            3489999999999999999999997      89999995

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.75  E-value=0.00023  Score=66.35  Aligned_cols=97  Identities=20%  Similarity=0.277  Sum_probs=68.4

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------------------------------c---
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------------------------------A---  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------------~---  242 (382)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.+.+.                                         .   
T Consensus         3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~~~~~~l~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~~   82 (356)
T PF01494_consen    3 DVAIVGAGPAGLAAALALARAGIDVTIIERRPDPRPKGRGIGLSPNSLRILQRLGLLDEILARGSPHEVMRIFFYDGISD   82 (356)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTCEEEEEESSSSCCCSSSSEEEEHHHHHHHHHTTEHHHHHHHSEEECEEEEEEEEETTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcccccccchhcccccccccccccccccccccccccchhhhhhhcccccceeeEeecccCC
Confidence            59999999999999999999999999999987660                                         0   


Q ss_pred             --------------------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          243 --------------------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       243 --------------------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                                                .    ...+.+.+++.|++++.++++..++.+.++  + .+.+....++...++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~--~-~~~~~~~~~g~~~~i  159 (356)
T PF01494_consen   83 SRIWVENPQIREDMEIDTKGPYGHVIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDDG--V-TVVVRDGEDGEEETI  159 (356)
T ss_dssp             SEEEEEEEEEEEECHSTSGSSCEEEEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETTE--E-EEEEEETCTCEEEEE
T ss_pred             ccceeeecccceeeeccccCCcchhhhHHHHHHhhhhhhhhhhhhheeeeecccccccccc--c-ccccccccCCceeEE
Confidence                                      0    011112234467899999999999888765  1 234444444555689


Q ss_pred             ecCeEEEeeCCCCC
Q 016820          293 KVSGLFFAIGHEPA  306 (382)
Q Consensus       293 ~~D~vi~~~G~~p~  306 (382)
                      .+|+||-|-|....
T Consensus       160 ~adlvVgADG~~S~  173 (356)
T PF01494_consen  160 EADLVVGADGAHSK  173 (356)
T ss_dssp             EESEEEE-SGTT-H
T ss_pred             EEeeeecccCcccc
Confidence            99999999999874

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=97.75  E-value=0.00015  Score=67.56  Aligned_cols=89  Identities=25%  Similarity=0.488  Sum_probs=61.8

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEE-eCCCC---------------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIH-RRDSF---------------------------------------------  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~-~~~~~---------------------------------------------  240 (382)
                      .|+|||+|..|+|.|..+++.|.+|.++. ..+.+                                             
T Consensus         1 DViVVGgG~AG~eAA~aaAr~G~~V~Lit~~~d~i~~~~Cnpsigg~~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~s   80 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAARMGAKVLLITHNTDTIGEMSCNPSIGGIAKGHLVREIDALGGLMGRAADETGIHFRMLNRS   80 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTT--EEEEES-GGGTT--SSSSEEESTTHHHHHHHHHHTT-SHHHHHHHHEEEEEEESTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeecccccccccchhhhccccccchhHHHhhhhhHHHHHHhHhhhhhhccccc
Confidence            48999999999999999999999999994 33333                                             


Q ss_pred             ---------------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          241 ---------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       241 ---------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                                     .+...+.+.+....+++++ ...+.++..+++  .+.+|.+.+   +  ..+.+|.||++||.
T Consensus        81 kGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~-~~~V~~l~~e~~--~v~GV~~~~---g--~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   81 KGPAVHALRAQVDRDKYSRAMREKLESHPNLTII-QGEVTDLIVENG--KVKGVVTKD---G--EEIEADAVVLATGT  150 (392)
T ss_dssp             S-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEE-ES-EEEEEECTT--EEEEEEETT---S--EEEEECEEEE-TTT
T ss_pred             CCCCccchHhhccHHHHHHHHHHHHhcCCCeEEE-EcccceEEecCC--eEEEEEeCC---C--CEEecCEEEEeccc
Confidence                           0112332333344889987 568999988764  366666643   3  68999999999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=97.74  E-value=0.00026  Score=68.61  Aligned_cols=58  Identities=17%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +++..+...+...++++|..++.+ -|++|... ++.+-|+|.-+.+++.++|-|+|.+.
T Consensus       184 ~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWA  243 (856)
T KOG2844|consen  184 MDPAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWA  243 (856)
T ss_pred             cCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHH
Confidence            355677788888999999999988 58888754 44567888888999999999999754

>PRK06834 hypothetical protein; Provisional

Probab=97.73  E-value=0.00026  Score=69.14  Aligned_cols=93  Identities=18%  Similarity=0.185  Sum_probs=68.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----c--------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----A--------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----~--------------------------------------  242 (382)
                      ..|+|||+|++|+-+|..|.+.|.+|+++++.+...     .                                      
T Consensus         4 ~dVlIVGaGp~Gl~lA~~La~~G~~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~~~l~~~~~~~~~~~~~~~~~~   83 (488)
T PRK06834          4 HAVVIAGGGPTGLMLAGELALAGVDVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIADRFLAQGQVAQVTGFAATRLD   83 (488)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcHHHHHhcCCccccceeeeEecc
Confidence            579999999999999999999999999999876420     0                                      


Q ss_pred             --------------hH----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          243 --------------SK----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       243 --------------~~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                    .+    ..+.+.+++.|++++.++++..++.++++     +.+.. .++  ..+.+|++|.|.|..
T Consensus        84 ~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~-----v~v~~-~~g--~~i~a~~vVgADG~~  155 (488)
T PRK06834         84 ISDFPTRHNYGLALWQNHIERILAEWVGELGVPIYRGREVTGFAQDDTG-----VDVEL-SDG--RTLRAQYLVGCDGGR  155 (488)
T ss_pred             cccCCCCCCccccccHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCe-----EEEEE-CCC--CEEEeCEEEEecCCC
Confidence                          00    01112344568999999999999887764     44443 113  478999999999987


Q ss_pred             CC
Q 016820          305 PA  306 (382)
Q Consensus       305 p~  306 (382)
                      +.
T Consensus       156 S~  157 (488)
T PRK06834        156 SL  157 (488)
T ss_pred             CC
Confidence            64

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.72  E-value=3.6e-05  Score=75.73  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=34.4

Q ss_pred             EEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           61 VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        61 vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      |||||||.+||+||..|++.|++|+|+|    +...+||.+..
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE----~~~~~GG~~~t   39 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVE----QRDKPGGRAGV   39 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEE----CCCCCcCceEE
Confidence            6899999999999999999999999999    56677776543

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.71  E-value=0.00074  Score=57.10  Aligned_cols=101  Identities=19%  Similarity=0.277  Sum_probs=70.4

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------------------  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------------  241 (382)
                      ...++|||+|++|+-+|.+|++.|.+|.+++++..+.                                           
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~~Gg~lf~~iVVq~~a~~iL~elgi~y~~~~~g~~v~d~~   96 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMWGGGMLFNKIVVQEEADEILDELGIPYEEYGDGYYVADSV   96 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-CTT---EEEETTTHHHHHHHT---EE-SSEEEES-HH
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCccccccccccchhhhhhhHHHHHHhCCceeEEeCCeEEEEcHH
Confidence            3579999999999999999999999999999887661                                           


Q ss_pred             -chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc------CCceEEEecCeEEEeeCCCCCh
Q 016820          242 -ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV------TGQVSDLKVSGLFFAIGHEPAT  307 (382)
Q Consensus       242 -~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~------~~~~~~~~~D~vi~~~G~~p~~  307 (382)
                       ....+..+.++ .|++++....++++--.++ ..+.++.++...      .-++..+.+.+|+.+||.....
T Consensus        97 ~~~s~L~s~a~~-aGakifn~~~vEDvi~r~~-~rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda~v  167 (230)
T PF01946_consen   97 EFTSTLASKAID-AGAKIFNLTSVEDVIVRED-DRVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDAEV  167 (230)
T ss_dssp             HHHHHHHHHHHT-TTEEEEETEEEEEEEEECS-CEEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSSSS
T ss_pred             HHHHHHHHHHhc-CCCEEEeeeeeeeeEEEcC-CeEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCchHH
Confidence             01122233344 8999999999999877664 358888887542      1245689999999999998754

>TIGR02730 carot_isom carotene isomerase

Probab=97.71  E-value=4.9e-05  Score=74.54  Aligned_cols=41  Identities=27%  Similarity=0.343  Sum_probs=36.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +||+|||||.+|+++|..|++.|++|+|+|    +...+||....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE----~~~~~GG~~~~   41 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLE----RYLIPGGSAGY   41 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEE----CCCCCCCceeE
Confidence            589999999999999999999999999999    56677776554

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>TIGR02731 phytoene_desat phytoene desaturase

Probab=97.68  E-value=5.2e-05  Score=73.57  Aligned_cols=40  Identities=35%  Similarity=0.532  Sum_probs=35.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +|+|||||++|+++|+.|.+.|++|+|+|    +...+||.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE----~~~~~GG~~~s   40 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLE----ARDVLGGKVAA   40 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEe----cCCCCCCCcce
Confidence            58999999999999999999999999999    55677887654

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK08244 hypothetical protein; Provisional

Probab=97.68  E-value=0.00033  Score=68.73  Aligned_cols=96  Identities=21%  Similarity=0.256  Sum_probs=69.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      ..|+|||+|++|+-+|..|.+.|.+|+++++.+....                                           
T Consensus         3 ~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   82 (493)
T PRK08244          3 YEVIIIGGGPVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGLLERFLEKGRKLPSGHFAGLDTRL   82 (493)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCcHHHHHhhcccccceEEecccccC
Confidence            4699999999999999999999999999998765400                                           


Q ss_pred             ---------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          243 ---------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       243 ---------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                                     .    ..++.+.+++.|++++.++++.+++.++++  + .+.+.+. .+ ..++.+|++|.|.|.
T Consensus        83 ~~~~~~~~~~~~~~i~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~-~g-~~~i~a~~vVgADG~  157 (493)
T PRK08244         83 DFSALDTSSNYTLFLPQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGDG--V-EVVVRGP-DG-LRTLTSSYVVGADGA  157 (493)
T ss_pred             CcccCCCCCCcEEEecHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCCe--E-EEEEEeC-Cc-cEEEEeCEEEECCCC
Confidence                           0    011122334568999999999999877664  1 2344431 12 257899999999998


Q ss_pred             CCC
Q 016820          304 EPA  306 (382)
Q Consensus       304 ~p~  306 (382)
                      ...
T Consensus       158 ~S~  160 (493)
T PRK08244        158 GSI  160 (493)
T ss_pred             ChH
Confidence            763

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=97.67  E-value=0.00056  Score=60.80  Aligned_cols=30  Identities=30%  Similarity=0.261  Sum_probs=28.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .|||||+|.|||+++..+...|-.|+|+|+
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek   40 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEK   40 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEec
Confidence            599999999999999999999888999994

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=97.67  E-value=0.00032  Score=74.36  Aligned_cols=91  Identities=16%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+|+|||+|+.|+.+|..|.+.|. .|+|+|..                             +.+...+.+.+++.||+
T Consensus       317 gk~VvViG~G~~g~e~A~~L~~~G~~vV~vv~~~-----------------------------~~~~~~l~~~L~~~GV~  367 (985)
T TIGR01372       317 GKRIVVATNNDSAYRAAADLLAAGIAVVAIIDAR-----------------------------ADVSPEARAEARELGIE  367 (985)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCceEEEEccC-----------------------------cchhHHHHHHHHHcCCE
Confidence            4789999999999999999999995 57888821                             01122345566788999


Q ss_pred             EEEe-eEEEEEecCC--cEEEEE---CCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSR--PFKVFT---DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~~~v~~---~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+..+..+++  .+.+..   ++.++.+|.|+++.|..|+..
T Consensus       368 i~~~~~v~~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pnt~  414 (985)
T TIGR01372       368 VLTGHVVAATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPVVH  414 (985)
T ss_pred             EEcCCeEEEEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCchhH
Confidence            9998 6778865543  234432   335699999999999998653

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06184 hypothetical protein; Provisional

Probab=97.67  E-value=0.00039  Score=68.42  Aligned_cols=95  Identities=14%  Similarity=0.142  Sum_probs=67.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      .+|+|||+|++|+-+|..|.+.|.+|+++++.+.+..                                           
T Consensus         4 ~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~~~~~~~~ra~~l~~~~~e~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~   83 (502)
T PRK06184          4 TDVLIVGAGPTGLTLAIELARRGVSFRLIEKAPEPFPGSRGKGIQPRTQEVFDDLGVLDRVVAAGGLYPPMRIYRDDGSV   83 (502)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCcCccceeecHHHHHHHHHcCcHHHHHhcCccccceeEEeCCceE
Confidence            4699999999999999999999999999998764400                                           


Q ss_pred             -----------------------hH----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          243 -----------------------SK----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       243 -----------------------~~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                                             .+    ..+.+.+.+.|+++++++++.+++.++++  + .+.+...  +++..+.+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~--v-~v~~~~~--~~~~~i~a~  158 (502)
T PRK06184         84 AESDMFAHLEPTPDEPYPLPLMVPQWRTERILRERLAELGHRVEFGCELVGFEQDADG--V-TARVAGP--AGEETVRAR  158 (502)
T ss_pred             EEeeccccccCCCCCCCCcceecCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCCc--E-EEEEEeC--CCeEEEEeC
Confidence                                   00    01112234458889999999999877664  1 1233221  234679999


Q ss_pred             eEEEeeCCCC
Q 016820          296 GLFFAIGHEP  305 (382)
Q Consensus       296 ~vi~~~G~~p  305 (382)
                      +||.|.|...
T Consensus       159 ~vVgADG~~S  168 (502)
T PRK06184        159 YLVGADGGRS  168 (502)
T ss_pred             EEEECCCCch
Confidence            9999999775

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.65  E-value=0.0018  Score=66.99  Aligned_cols=95  Identities=20%  Similarity=0.171  Sum_probs=63.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++|||||||..|+.+|..+.++|.+ |+++++..               ...++   .  ...++     +.+.+.|++
T Consensus       570 gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~---------------~~~~~---~--~~~e~-----~~~~~~GV~  624 (752)
T PRK12778        570 GKKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRS---------------EEEMP---A--RLEEV-----KHAKEEGIE  624 (752)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCC---C--CHHHH-----HHHHHcCCE
Confidence            47899999999999999999999998 99998420               00111   1  11221     235677999


Q ss_pred             EEEe-eEEEEEecC-CcE---EEE-------------------ECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKS-RPF---KVF-------------------TDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~-~~~---~v~-------------------~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.. .+..+..++ +.+   .+.                   .+...+.+|.||+|+|..|+..
T Consensus       625 i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~p~~~  689 (752)
T PRK12778        625 FLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVSPNPL  689 (752)
T ss_pred             EEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCCCCcc
Confidence            8877 466664332 221   111                   0112589999999999998764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=97.65  E-value=0.00055  Score=69.32  Aligned_cols=96  Identities=22%  Similarity=0.230  Sum_probs=63.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..++|+|||+|..|+.+|..+.++|. +|+|+.+..               ...+|.     ...++.+     +.+.||
T Consensus       322 ~gk~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~---------------~~~mpa-----~~~ei~~-----a~~eGV  376 (652)
T PRK12814        322 PGKKVVVIGGGNTAIDAARTALRLGAESVTILYRRT---------------REEMPA-----NRAEIEE-----ALAEGV  376 (652)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecC---------------cccCCC-----CHHHHHH-----HHHcCC
Confidence            35799999999999999999999997 599998410               001111     1223322     235699


Q ss_pred             EEEEe-eEEEEEecCCcEEEE-----E--------------CC--eEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVF-----T--------------DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~-----~--------------~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.. .+.++..+++.+.+.     .              ++  ..+.+|.||+|+|..|+..
T Consensus       377 ~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~~p~~~  440 (652)
T PRK12814        377 SLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQQVDPP  440 (652)
T ss_pred             cEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCCcCCcc
Confidence            99887 466665544432221     0              12  2489999999999988754

>PLN02852 ferredoxin-NADP+ reductase

Probab=97.64  E-value=0.0001  Score=71.33  Aligned_cols=88  Identities=22%  Similarity=0.220  Sum_probs=61.4

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhh--cCCEEEEEEeCCCCc---------ch---HH---HHHHhccCCCcEEEcCcee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDSFR---------AS---KI---MQNRALTNPKIDVIWNSVV  264 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~--~g~~v~~~~~~~~~~---------~~---~~---~~~~~l~~~gv~~~~~~~v  264 (382)
                      ...+++|+|||+|+.|+.+|..|.+  .|++|+++++.+.+.         ..   +.   ...+++...+|+++.+..+
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~v  102 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTL  102 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEE
Confidence            3346899999999999999999986  689999999988661         00   11   1124466678888876544


Q ss_pred             EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                           ..+      +.+..      ....+|.||+|+|..+.
T Consensus       103 -----g~d------vtl~~------L~~~yDaVIlAtGa~~~  127 (491)
T PLN02852        103 -----GRD------VSLSE------LRDLYHVVVLAYGAESD  127 (491)
T ss_pred             -----Ccc------ccHHH------HhhhCCEEEEecCCCCC
Confidence                 111      33322      22469999999999863

>PRK09126 hypothetical protein; Provisional

Probab=97.64  E-value=0.00047  Score=65.55  Aligned_cols=94  Identities=20%  Similarity=0.192  Sum_probs=66.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------c-----h------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------A-----S------------------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------~-----~------------------------------  243 (382)
                      -+|+|||+|+.|+-+|..|.+.|.+|+++++.+...       .     .                              
T Consensus         4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~~i~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~   83 (392)
T PRK09126          4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLAALADPAFDGREIALTHASREILQRLGAWDRIPEDEISPLRDAKVL   83 (392)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcccccCCCCchhHHHhhHHHHHHHHHCCChhhhccccCCccceEEEE
Confidence            469999999999999999999999999999875310       0     0                              


Q ss_pred             ------------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe
Q 016820          244 ------------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK  293 (382)
Q Consensus       244 ------------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~  293 (382)
                                                    +.+.+.+.+..|++++.++++.+++.++++     +.+..   .++.++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~~-----~~v~~---~~g~~~~  155 (392)
T PRK09126         84 NGRSPFALTFDARGRGADALGYLVPNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDDG-----AQVTL---ANGRRLT  155 (392)
T ss_pred             cCCCCceeEeehhhcCCCcceEEEeHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCCe-----EEEEE---cCCCEEE
Confidence                                          000111123457888888888888776653     33332   1225799


Q ss_pred             cCeEEEeeCCCCCh
Q 016820          294 VSGLFFAIGHEPAT  307 (382)
Q Consensus       294 ~D~vi~~~G~~p~~  307 (382)
                      +|++|.|.|..+..
T Consensus       156 a~~vI~AdG~~S~v  169 (392)
T PRK09126        156 ARLLVAADSRFSAT  169 (392)
T ss_pred             eCEEEEeCCCCchh
Confidence            99999999987653

>PLN02529 lysine-specific histone demethylase 1

Probab=97.61  E-value=8.8e-05  Score=75.01  Aligned_cols=42  Identities=31%  Similarity=0.445  Sum_probs=35.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..++|+|||||++|+++|..|++.|++|+|+|+    ...+||++.
T Consensus       159 ~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~----~~~~GG~~~  200 (738)
T PLN02529        159 TEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEG----RNRPGGRVY  200 (738)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCcEEEEec----CccCcCcee
Confidence            468999999999999999999999999999994    445555443

>PRK06475 salicylate hydroxylase; Provisional

Probab=97.61  E-value=0.00053  Score=65.40  Aligned_cols=35  Identities=23%  Similarity=0.282  Sum_probs=32.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ++|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~   37 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL   37 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            68999999999999999999999999999987754

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=97.59  E-value=0.00028  Score=73.31  Aligned_cols=86  Identities=19%  Similarity=0.246  Sum_probs=61.6

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAY  268 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~  268 (382)
                      ..+++|+|||+|+.|+..|..|.+.|++|+++++.+.+.           ......   .+.+.+.||+++++..+ .+ 
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~~IP~~Rlp~evL~~die~l~~~GVe~~~gt~V-di-  614 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKNIIPQFRIPAELIQHDIEFVKAHGVKFEFGCSP-DL-  614 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceeeecccccccHHHHHHHHHHHHHcCCEEEeCcee-EE-
Confidence            357899999999999999999999999999999876431           111111   13455679999988765 12 


Q ss_pred             ecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          269 GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       269 ~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                                 .+..   .  ....+|.|++|||..+.
T Consensus       615 -----------~le~---L--~~~gYDaVILATGA~~~  636 (1019)
T PRK09853        615 -----------TVEQ---L--KNEGYDYVVVAIGADKN  636 (1019)
T ss_pred             -----------Ehhh---h--eeccCCEEEECcCCCCC
Confidence                       1111   1  23568999999999854

>PLN02676 polyamine oxidase

Probab=97.58  E-value=9.6e-05  Score=72.10  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=36.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||+|||||++||++|+.|++.|. +|+|+|    ....+||.+..
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE----~~~~~GG~~~~   68 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILE----ATDRIGGRMRK   68 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEec----CCCCCCCccee
Confidence            45799999999999999999999998 699999    55667776653

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.58  E-value=0.00063  Score=64.71  Aligned_cols=34  Identities=24%  Similarity=0.374  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus         6 ~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~~   39 (392)
T PRK08773          6 RRDAVIVGGGVVGAACALALADAGLSVALVEGRE   39 (392)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence            4579999999999999999999999999999864

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=97.56  E-value=0.00011  Score=68.69  Aligned_cols=43  Identities=28%  Similarity=0.385  Sum_probs=36.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ...+|||||||.||++||.+|.++| .+++|+|    ....+||++..
T Consensus        20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlE----a~dRIGGRI~t   63 (498)
T KOG0685|consen   20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILE----ASDRIGGRIHT   63 (498)
T ss_pred             CCceEEEECCchHHHHHHHHHHHhCCceEEEEE----eccccCceEee
Confidence            4468999999999999999999775 6899999    77788888664

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.56  E-value=0.00087  Score=60.78  Aligned_cols=91  Identities=16%  Similarity=0.212  Sum_probs=66.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------------------------------  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------------------------------  242 (382)
                      .|+|||+|+.|+-+|..|.+.|.+|+++++.+....                                            
T Consensus         2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (295)
T TIGR02032         2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEIPIE   81 (295)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEeccC
Confidence            589999999999999999999999999998754210                                            


Q ss_pred             ------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          243 ------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       243 ------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                                  ...+ .+.+.+.|++++.++++.++..++++     +.+...  .+...+.+|++|.|+|...
T Consensus        82 ~~~~~~i~r~~l~~~l-~~~~~~~gv~~~~~~~v~~~~~~~~~-----~~~~~~--~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        82 TELAYVIDRDAFDEQL-AERAQEAGAELRLGTTVLDVEIHDDR-----VVVIVR--GGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             CCcEEEEEHHHHHHHH-HHHHHHcCCEEEeCcEEeeEEEeCCE-----EEEEEc--CccEEEEeCEEEECCCcch
Confidence                        0112 23344578999999999998776653     333221  2235789999999999864

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.55  E-value=0.00027  Score=62.92  Aligned_cols=50  Identities=18%  Similarity=0.236  Sum_probs=39.7

Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccccccC
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSES  380 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~~~  380 (382)
                      +..+.||+|++|-..+.  ..-..+...|.+|+.|+++...++.+..+++..
T Consensus       330 ~lk~~p~l~fAGQitG~--EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT  379 (439)
T COG1206         330 QLKKRPNLFFAGQITGV--EGYVESAASGLLAGINAARLALGEEPLIPPPTT  379 (439)
T ss_pred             hcccCCCcEEeeeeecc--hhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchh
Confidence            34478999999999874  355678889999999999999988876665543

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.55  E-value=0.00059  Score=63.61  Aligned_cols=31  Identities=26%  Similarity=0.463  Sum_probs=29.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      .|+|||+|..|+-+|.+|.+.|.+|+++++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~~G~~V~l~e~~   31 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELARRGHSVTLLERG   31 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeec
Confidence            4899999999999999999999999999988

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PRK05868 hypothetical protein; Validated

Probab=97.54  E-value=0.0008  Score=63.49  Aligned_cols=93  Identities=17%  Similarity=0.280  Sum_probs=65.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h----------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S----------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~----------------------  243 (382)
                      ++|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                    .                      
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   81 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLLAAAQEHKTRIRGASFVDRDGNE   81 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCHHHHHhhccCccceEEEeCCCCE
Confidence            4799999999999999999999999999998775510                    0                      


Q ss_pred             -----------------------HHHHHHhcc---CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          244 -----------------------KIMQNRALT---NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       244 -----------------------~~~~~~~l~---~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                                             ..+ .+.+.   ..|++++++.+++.++.++++     +.+..   .++.++.+|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~i~R~~L-~~~l~~~~~~~v~i~~~~~v~~i~~~~~~-----v~v~~---~dg~~~~adlv  152 (372)
T PRK05868         82 LFRDTESTPTGGPVNSPDIELLRDDL-VELLYGATQPSVEYLFDDSISTLQDDGDS-----VRVTF---ERAAAREFDLV  152 (372)
T ss_pred             EeecccccccCCCCCCceEEEEHHHH-HHHHHHhccCCcEEEeCCEEEEEEecCCe-----EEEEE---CCCCeEEeCEE
Confidence                                   001 11111   357788888888888766543     44433   22246889999


Q ss_pred             EEeeCCCCCh
Q 016820          298 FFAIGHEPAT  307 (382)
Q Consensus       298 i~~~G~~p~~  307 (382)
                      |-|-|.+...
T Consensus       153 IgADG~~S~v  162 (372)
T PRK05868        153 IGADGLHSNV  162 (372)
T ss_pred             EECCCCCchH
Confidence            9999987654

>PRK06126 hypothetical protein; Provisional

Probab=97.53  E-value=0.0013  Score=65.52  Aligned_cols=99  Identities=18%  Similarity=0.299  Sum_probs=70.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------hH--------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------SK--------------------  244 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~~--------------------  244 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+....                    .+                    
T Consensus         7 ~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~~~~~~ra~~l~~r~~e~L~~lGl~~~l~~~g~~~~~~~~~~~~~~   86 (545)
T PRK06126          7 ETPVLIVGGGPVGLALALDLGRRGVDSILVERKDGTAFNPKANTTSARSMEHFRRLGIADEVRSAGLPVDYPTDIAYFTR   86 (545)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCccccCCHHHHHHHHhcChHHHHHhhcCCccccCCceEEec
Confidence            46799999999999999999999999999987764300                    00                    


Q ss_pred             ---------------------------------------HHHHHhc-----cCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          245 ---------------------------------------IMQNRAL-----TNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       245 ---------------------------------------~~~~~~l-----~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                                                             ...++.|     +..++++++++++.+++.++++  +. +.
T Consensus        87 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~~--v~-v~  163 (545)
T PRK06126         87 LTGYELARFRLPSAREAITPVGGPDGSWPSPELPHRIPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDADG--VT-AT  163 (545)
T ss_pred             CCCceeeeeecCCcCcccccccccccccCCCCccccCCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCCe--EE-EE
Confidence                                                   0001111     2357899999999999887764  22 44


Q ss_pred             EEeccCCceEEEecCeEEEeeCCCCC
Q 016820          281 VKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       281 ~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      +.+..+++..++.+|++|.|.|....
T Consensus       164 ~~~~~~g~~~~i~ad~vVgADG~~S~  189 (545)
T PRK06126        164 VEDLDGGESLTIRADYLVGCDGARSA  189 (545)
T ss_pred             EEECCCCcEEEEEEEEEEecCCcchH
Confidence            44433454467899999999998763

>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]

Probab=97.52  E-value=0.00018  Score=70.72  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=69.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC-CCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-QGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...-+|||||.-|+++|..|...|.++.+++                     +..+. ..--...--..|+..+.+.|++
T Consensus       145 ~~~avVIGGGLLGlEaA~~L~~~Gm~~~Vvh---------------------~~~~lMerQLD~~ag~lL~~~le~~Gi~  203 (793)
T COG1251         145 KKKAVVIGGGLLGLEAARGLKDLGMEVTVVH---------------------IAPTLMERQLDRTAGRLLRRKLEDLGIK  203 (793)
T ss_pred             cCCcEEEccchhhhHHHHHHHhCCCceEEEe---------------------ecchHHHHhhhhHHHHHHHHHHHhhcce
Confidence            4557999999999999999999999999998                     10110 0001122334566777888999


Q ss_pred             EEEee-EEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTET-VSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~~-v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.++ .+.|-.+++...+... +..+.+|.+|+|+|.+|+.-
T Consensus       204 ~~l~~~t~ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn~e  246 (793)
T COG1251         204 VLLEKNTEEIVGEDKVEGVRFADGTEIPADLVVMAVGIRPNDE  246 (793)
T ss_pred             eecccchhhhhcCcceeeEeecCCCcccceeEEEecccccccH
Confidence            99884 4445444444455554 45599999999999999764

>PRK07236 hypothetical protein; Provisional

Probab=97.52  E-value=0.0007  Score=64.26  Aligned_cols=94  Identities=18%  Similarity=0.139  Sum_probs=64.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-c-------hH---HHHHHh-----------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-A-------SK---IMQNRA-----------------------  250 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-~-------~~---~~~~~~-----------------------  250 (382)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+... .       ..   ..++++                       
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~g~   85 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPTELDGRGAGIVLQPELLRALAEAGVALPADIGVPSRERIYLDRDGR   85 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCCCcccccccCccceEEEeCCCC
Confidence            4789999999999999999999999999999876421 0       11   111110                       


Q ss_pred             --------------------c-c-CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          251 --------------------L-T-NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       251 --------------------l-~-~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                                          | + -.+++++.++++++++.++++     +.+..   .++.++.+|+||.|-|....
T Consensus        86 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-----v~v~~---~~g~~~~ad~vIgADG~~S~  155 (386)
T PRK07236         86 VVQRRPMPQTQTSWNVLYRALRAAFPAERYHLGETLVGFEQDGDR-----VTARF---ADGRRETADLLVGADGGRST  155 (386)
T ss_pred             EeeccCCCccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCe-----EEEEE---CCCCEEEeCEEEECCCCCch
Confidence                                0 0 012457888889999877653     43433   22357899999999886543

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.51  E-value=0.0015  Score=65.00  Aligned_cols=98  Identities=21%  Similarity=0.314  Sum_probs=67.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..                                          
T Consensus        23 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  102 (547)
T PRK08132         23 RHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAICFAKRSLEIFDRLGCGERMVDKGVSWNVGKVFLRDEE  102 (547)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEEEcHHHHHHHHHcCCcHHHHhhCceeeceeEEeCCCe
Confidence            45799999999999999999999999999987764300                                          


Q ss_pred             --------------------hH-----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          243 --------------------SK-----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       243 --------------------~~-----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                                          .+     .+.+.+.+..++++++++++.+++.++++   ..+.+.+  .+...++.+|++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~~---v~v~~~~--~~g~~~i~ad~v  177 (547)
T PRK08132        103 VYRFDLLPEPGHRRPAFINLQQYYVEGYLVERAQALPNIDLRWKNKVTGLEQHDDG---VTLTVET--PDGPYTLEADWV  177 (547)
T ss_pred             EEEecCCCCCCCCCCceEecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEEcCCE---EEEEEEC--CCCcEEEEeCEE
Confidence                                00     00111112246889899999999887664   1133332  122246899999


Q ss_pred             EEeeCCCCCh
Q 016820          298 FFAIGHEPAT  307 (382)
Q Consensus       298 i~~~G~~p~~  307 (382)
                      |.|.|.....
T Consensus       178 VgADG~~S~v  187 (547)
T PRK08132        178 IACDGARSPL  187 (547)
T ss_pred             EECCCCCcHH
Confidence            9999977643

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=97.51  E-value=0.00012  Score=70.15  Aligned_cols=197  Identities=17%  Similarity=0.127  Sum_probs=109.6

Q ss_pred             cccEEEECCcH-HHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGP-AAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~-aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+.+++|.++ .+...|..+..-+-  -+..           .++   ....+|.+-.-+....+...++...+.....
T Consensus         5 ~~~e~~~~~~~~~a~~~a~rCl~C~~--~C~~-----------~cp---~~~~IP~~~~lv~~g~~~~a~~~i~~tn~~p   68 (457)
T COG0493           5 DFREAVVGSGPEAAIYEAARCLDCGD--PCIT-----------GCP---VHNDIPEPIGLVREGVDHEAIKLIHKTNNLP   68 (457)
T ss_pred             cceeeecCCCHHHHHHHHHHHHcCCC--cccc-----------CCc---CCCcCCCHHHHHhcCCcHHHHHHHHHhCCCc
Confidence            46889999999 77777777654432  1111           111   1112222211111111333344444444444


Q ss_pred             EEEeeEEEEE--ecCCcEEEEECCeEEEcCEEEEccCCCCcCC-CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820          137 IFTETVSKVD--FKSRPFKVFTDSKSVLADTVIVATGAVAKKL-QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG  213 (382)
Q Consensus       137 ~~~~~v~~i~--~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  213 (382)
                      -++++|.-..  -+.. .++..++..+.++.|..+.|...... .+++...              .  ...+++|+|||+
T Consensus        69 ~~~gRvcp~~~~ceg~-cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~~--------------~--~~tg~~VaviGa  131 (457)
T COG0493          69 AITGRVCPLGNLCEGA-CVLGIEELPVNIGALERAIGDKADREGWIPGELP--------------G--SRTGKKVAVIGA  131 (457)
T ss_pred             cccCccCCCCCceeee-eeeccCCCchhhhhHHHHHhhHHHHhCCCCCCCC--------------C--CCCCCEEEEECC
Confidence            4444433222  1111 11111345577788888877653221 1222210              0  224589999999


Q ss_pred             CchHHHHHHHHhhcCCEEEEEEeCCCCc-----------c----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          214 GDSAMEEANFLTKYGSKVYIIHRRDSFR-----------A----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       214 G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      |+.++.+|..|.+.|+.||++.+.+...           .    .... -+.|++.|++|+.+.++-.    +       
T Consensus       132 GPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~yGIP~~kl~k~i~d~~-i~~l~~~Gv~~~~~~~vG~----~-------  199 (457)
T COG0493         132 GPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRR-LELLERSGVEFKLNVRVGR----D-------  199 (457)
T ss_pred             CchHhhhHHHHHhCCCeEEEeCCcCCCceeEEecCchhhccchHHHHH-HHHHHHcCeEEEEcceECC----c-------
Confidence            9999999999999999999998887661           1    1122 2467788999998876621    1       


Q ss_pred             EEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          279 LKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       279 v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      ++++.      ..-.+|.+++++|..-
T Consensus       200 it~~~------L~~e~Dav~l~~G~~~  220 (457)
T COG0493         200 ITLEE------LLKEYDAVFLATGAGK  220 (457)
T ss_pred             CCHHH------HHHhhCEEEEeccccC
Confidence            22222      2234599999999853

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.50  E-value=0.001  Score=66.10  Aligned_cols=98  Identities=18%  Similarity=0.339  Sum_probs=69.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------------------  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------------  241 (382)
                      ..+|+|||+|++|+-+|..|.+.|.+|+++++.+.+.                                           
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~l~~~~~~~L~~lGl~~~l~~~~~~~~~~~~~~~~g~   89 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVGIDDEALRVLQAIGLADEVLPHTTPNHGMRFLDAKGR   89 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceeeeCHHHHHHHHHcCChhHHHhhcccCCceEEEcCCCC
Confidence            4579999999999999999999999999999876430                                           


Q ss_pred             ----ch----------------HHHHHHh----cc-CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          242 ----AS----------------KIMQNRA----LT-NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       242 ----~~----------------~~~~~~~----l~-~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                          ..                +...++.    +. ..|+++++++++++++.++++  + .+++++. +++..++.+|+
T Consensus        90 ~~~~~~~~~~~~~g~~~~~~~~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~~--v-~v~~~~~-~G~~~~i~ad~  165 (538)
T PRK06183         90 CLAEIARPSTGEFGWPRRNAFHQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDDG--V-TVTLTDA-DGQRETVRARY  165 (538)
T ss_pred             EEEEEcCCCCCCCCCChhccCChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCCe--E-EEEEEcC-CCCEEEEEEEE
Confidence                00                0000111    22 248999999999999887765  1 2344321 24346799999


Q ss_pred             EEEeeCCCCC
Q 016820          297 LFFAIGHEPA  306 (382)
Q Consensus       297 vi~~~G~~p~  306 (382)
                      ||-|.|....
T Consensus       166 vVgADG~~S~  175 (538)
T PRK06183        166 VVGCDGANSF  175 (538)
T ss_pred             EEecCCCchh
Confidence            9999998764

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.50  E-value=0.00023  Score=74.56  Aligned_cols=88  Identities=18%  Similarity=0.209  Sum_probs=62.7

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEEe
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      .+++|+|||+|+.|+.+|.+|.+.|++|+++++.+.+.           ..+.+.   -+.+++.||+++++..+-    
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG----  380 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLRYGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG----  380 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEEccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec----
Confidence            47999999999999999999999999999999876541           112111   134667899998886541    


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC-CCh
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE-PAT  307 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~-p~~  307 (382)
                       .+      +.+++     .....+|.|++|||.. |..
T Consensus       381 -~d------it~~~-----l~~~~yDAV~LAtGA~~pr~  407 (944)
T PRK12779        381 -KT------ATLED-----LKAAGFWKIFVGTGAGLPTF  407 (944)
T ss_pred             -cE------EeHHH-----hccccCCEEEEeCCCCCCCc
Confidence             11      33322     1235799999999994 543

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=97.50  E-value=0.00014  Score=74.07  Aligned_cols=43  Identities=28%  Similarity=0.439  Sum_probs=37.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..++|+|||||++|+++|+.|.+.|++|+|+|    +...+||++..
T Consensus       237 ~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E----~~~r~GGr~~t  279 (808)
T PLN02328        237 EPANVVVVGAGLAGLVAARQLLSMGFKVVVLE----GRARPGGRVKT  279 (808)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEe----ccccCCCcccc
Confidence            45899999999999999999999999999999    55567776543

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.003  Score=56.87  Aligned_cols=112  Identities=17%  Similarity=0.144  Sum_probs=73.2

Q ss_pred             CCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH
Q 016820           45 PKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD  124 (382)
Q Consensus        45 ~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  124 (382)
                      ....+..+.+--.-+||+|||||-+|+++|+.|+-.=..|+|+|                     |   ...+..+   +
T Consensus       341 VayCPHCDGPLF~gK~VAVIGGGNSGvEAAIDLAGiv~hVtllE---------------------F---~~eLkAD---~  393 (520)
T COG3634         341 VAYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE---------------------F---APELKAD---A  393 (520)
T ss_pred             eeeCCCCCCcccCCceEEEECCCcchHHHHHhHHhhhheeeeee---------------------c---chhhhhH---H
Confidence            33344444444456899999999999999999998878999999                     1   0111122   2


Q ss_pred             HHHHHHHH-cCcEEEEe-eEEEEEecCCcE-----EEEECC--eEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          125 RCRNQSLR-FGTQIFTE-TVSKVDFKSRPF-----KVFTDS--KSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       125 ~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~-----~v~~~~--~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      -+++.+.. .+++++.+ .-++|.-+.+.+     .-+..+  ..+.-+-+++-.|..|+...+.|.-
T Consensus       394 VLq~kl~sl~Nv~ii~na~Ttei~Gdg~kV~Gl~Y~dr~sge~~~l~LeGvFVqIGL~PNT~WLkg~v  461 (520)
T COG3634         394 VLQDKLRSLPNVTIITNAQTTEVKGDGDKVTGLEYRDRVSGEEHHLELEGVFVQIGLLPNTEWLKGAV  461 (520)
T ss_pred             HHHHHHhcCCCcEEEecceeeEEecCCceecceEEEeccCCceeEEEeeeeEEEEecccChhHhhchh
Confidence            34444444 37888887 566676554432     222222  2366788999999999887776653

>PTZ00188 adrenodoxin reductase; Provisional

Probab=97.49  E-value=0.00048  Score=66.01  Aligned_cols=86  Identities=21%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             CCCcEEEEcCCchHHHHHHHHh-hcCCEEEEEEeCCCCc---------c---hHHH---HHHhccCCCcEEEcCceeEEE
Q 016820          204 RDKPLAVIGGGDSAMEEANFLT-KYGSKVYIIHRRDSFR---------A---SKIM---QNRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~-~~g~~v~~~~~~~~~~---------~---~~~~---~~~~l~~~gv~~~~~~~v~~i  267 (382)
                      .+++|+|||+|+.|+.+|..|. +.+++|+++++.+.+.         .   .+.+   ....+...+++++.+..+-  
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG--  115 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG--  115 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec--
Confidence            4689999999999999999764 6799999999998771         0   1111   1123445677766332221  


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                         .+      +.++      ...-.+|.||+++|..+.
T Consensus       116 ---~D------vt~e------eL~~~YDAVIlAtGA~~l  139 (506)
T PTZ00188        116 ---VD------LKME------ELRNHYNCVIFCCGASEV  139 (506)
T ss_pred             ---Cc------cCHH------HHHhcCCEEEEEcCCCCC
Confidence               11      1111      122378999999998864

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=97.48  E-value=0.0016  Score=63.33  Aligned_cols=94  Identities=18%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++++|||+|..|+.+|..+.++|. +|+|+++..               ...++.     ...++     +.+.+.|++
T Consensus       282 gk~VvVIGgG~~a~d~A~~a~~~Ga~~Vtvv~r~~---------------~~~~~~-----~~~e~-----~~~~~~GV~  336 (467)
T TIGR01318       282 GKRVVVLGGGDTAMDCVRTAIRLGAASVTCAYRRD---------------EANMPG-----SRREV-----ANAREEGVE  336 (467)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCCeEEEEEecC---------------cccCCC-----CHHHH-----HHHHhcCCE
Confidence            4789999999999999999999996 699998410               000111     11222     334677999


Q ss_pred             EEEe-eEEEEEecC-CcE---EEE-E------------------CCeEEEcCEEEEccCCCCcC
Q 016820          137 IFTE-TVSKVDFKS-RPF---KVF-T------------------DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       137 ~~~~-~v~~i~~~~-~~~---~v~-~------------------~~~~~~~d~lvlA~G~~~~~  176 (382)
                      ++.+ .+..+..++ +.+   ++. +                  +...+.+|.||+|+|..|+.
T Consensus       337 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~~p~~  400 (467)
T TIGR01318       337 FLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGFQPHA  400 (467)
T ss_pred             EEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcCCCCc
Confidence            9888 577775432 222   121 0                  11358999999999999874

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=97.47  E-value=0.00016  Score=70.41  Aligned_cols=40  Identities=28%  Similarity=0.404  Sum_probs=35.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +|+|||||++|+++|+.|++.|++|+|+|    +...+||.+..
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E----~~~~~GG~~~~   40 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYE----SRSFIGGKVGS   40 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEE----ecCCCCceeee
Confidence            58999999999999999999999999999    55667776554

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PRK06753 hypothetical protein; Provisional

Probab=97.47  E-value=0.00085  Score=63.31  Aligned_cols=34  Identities=26%  Similarity=0.532  Sum_probs=31.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            6999999999999999999999999999988754

>PRK06185 hypothetical protein; Provisional

Probab=97.45  E-value=0.0016  Score=62.26  Aligned_cols=97  Identities=16%  Similarity=0.320  Sum_probs=67.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------c----------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------A----------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~----------------------  242 (382)
                      ..+|+|||+|++|+-+|..|.+.|.+|+++++.+.+.                    .                      
T Consensus         6 ~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~~~~~~r~~~l~~~s~~~L~~lG~~~~~~~~~~~~~~~~~~~~~~~   85 (407)
T PRK06185          6 TTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHADFLRDFRGDTVHPSTLELMDELGLLERFLELPHQKVRTLRFEIGGR   85 (407)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccCccccCceeChhHHHHHHHcCChhHHhhcccceeeeEEEEECCe
Confidence            4679999999999999999999999999999865320                    0                      


Q ss_pred             -------------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          243 -------------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       243 -------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                                               ...+.+.+.+..|++++.++++.++..++++  +.++.+..  .+....+.+|.+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~--v~~v~~~~--~~g~~~i~a~~v  161 (407)
T PRK06185         86 TVTLADFSRLPTPYPYIAMMPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGR--VTGVRART--PDGPGEIRADLV  161 (407)
T ss_pred             EEEecchhhcCCCCCcEEEeehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCE--EEEEEEEc--CCCcEEEEeCEE
Confidence                                     0011111112347888888888888776543  33445543  122247899999


Q ss_pred             EEeeCCCC
Q 016820          298 FFAIGHEP  305 (382)
Q Consensus       298 i~~~G~~p  305 (382)
                      |.|.|...
T Consensus       162 I~AdG~~S  169 (407)
T PRK06185        162 VGADGRHS  169 (407)
T ss_pred             EECCCCch
Confidence            99999875

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.45  E-value=0.0012  Score=62.43  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=29.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~  238 (382)
                      .|+|||+|+.|+-+|..|.+.| .+|+++++.+
T Consensus         1 dv~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~   33 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSRLGKIKIALIEANS   33 (382)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence            4899999999999999999999 9999998765

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07588 hypothetical protein; Provisional

Probab=97.44  E-value=0.0012  Score=62.80  Aligned_cols=34  Identities=26%  Similarity=0.459  Sum_probs=31.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHHCCCceEEEeCCCCc
Confidence            6999999999999999999999999999877654

>PRK07190 hypothetical protein; Provisional

Probab=97.43  E-value=0.001  Score=65.03  Aligned_cols=92  Identities=15%  Similarity=0.119  Sum_probs=65.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------ch----------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------AS----------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~----------------------  243 (382)
                      ..|+|||+|++|+-+|..|.+.|.+|.++++.+...                    ..                      
T Consensus         6 ~dVlIVGAGPaGL~lA~~Lar~Gi~V~llEr~~~~~~~gra~~l~~~tle~L~~lGl~~~l~~~~~~~~~~~~~~~g~~i   85 (487)
T PRK07190          6 TDVVIIGAGPVGLMCAYLGQLCGLNTVIVDKSDGPLEVGRADALNARTLQLLELVDLFDELYPLGKPCNTSSVWANGKFI   85 (487)
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCCEEEEeCCCcccccccceEeCHHHHHHHHhcChHHHHHhhCccceeEEEecCCceE
Confidence            479999999999999999999999999998776430                    00                      


Q ss_pred             ----------------------HH----HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          244 ----------------------KI----MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       244 ----------------------~~----~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                                            +.    ++.+.+++.|++++++++++++..++++     +.+.. ..+  .++.++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~q~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~-----v~v~~-~~g--~~v~a~~v  157 (487)
T PRK07190         86 SRQSSWWEELEGCLHKHFLMLGQSYVEKLLDDKLKEAGAAVKRNTSVVNIELNQAG-----CLTTL-SNG--ERIQSRYV  157 (487)
T ss_pred             eeccccCccCCcCCCCceEecCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCe-----eEEEE-CCC--cEEEeCEE
Confidence                                  00    0011233468889999999999887764     33332 113  47899999


Q ss_pred             EEeeCCCC
Q 016820          298 FFAIGHEP  305 (382)
Q Consensus       298 i~~~G~~p  305 (382)
                      |.|.|.+.
T Consensus       158 VgADG~~S  165 (487)
T PRK07190        158 IGADGSRS  165 (487)
T ss_pred             EECCCCCH
Confidence            99999865

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.43  E-value=0.00021  Score=71.06  Aligned_cols=35  Identities=26%  Similarity=0.311  Sum_probs=32.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM   91 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~   91 (382)
                      .+.||||||+|.+|++||..+++.|.+|+||||..
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELADAGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            46899999999999999999999999999999643

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.42  E-value=0.0022  Score=61.27  Aligned_cols=136  Identities=20%  Similarity=0.224  Sum_probs=84.7

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----------------------------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----------------------------------------  242 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----------------------------------------  242 (382)
                      ..++++|||+|++|+-.|..|.+.|.+++++.|.+.+..                                         
T Consensus         5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~~~   84 (448)
T KOG1399|consen    5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERDPR   84 (448)
T ss_pred             CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccCcc
Confidence            368999999999999999999999999999998887610                                         


Q ss_pred             ---hH-H---HHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC--CChhhhc
Q 016820          243 ---SK-I---MQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVD  311 (382)
Q Consensus       243 ---~~-~---~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~--p~~~~~~  311 (382)
                         .. .   .++...+..++  .+..++.+.+++...+|+  ..|...+.... ..+.-||.|++|+|.-  |+.+...
T Consensus        85 ~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gk--W~V~~~~~~~~-~~~~ifd~VvVctGh~~~P~~P~~~  161 (448)
T KOG1399|consen   85 YFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGK--WRVTTKDNGTQ-IEEEIFDAVVVCTGHYVEPRIPQIP  161 (448)
T ss_pred             cCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCc--eeEEEecCCcc-eeEEEeeEEEEcccCcCCCCCCcCC
Confidence               00 1   11223334443  466678788888876443  33555442211 3567899999999998  5555443


Q ss_pred             ccccccC-CCceeeCCCCCcC----CCCceEEecccCC
Q 016820          312 GQLDLHS-DGYIITKPGTTHT----SVPGVFAAGDVQD  344 (382)
Q Consensus       312 ~~~~~~~-~g~i~vd~~~~~t----~~~~vya~GD~~~  344 (382)
                       +...+. .|.+.- .+.++.    ....|.++|--.+
T Consensus       162 -g~~~~~f~G~~iH-S~~Yk~~e~f~~k~VlVIG~g~S  197 (448)
T KOG1399|consen  162 -GPGIESFKGKIIH-SHDYKSPEKFRDKVVLVVGCGNS  197 (448)
T ss_pred             -CCchhhcCCccee-hhhccCcccccCceEEEECCCcc
Confidence             321222 222211 112221    3467888887654

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.42  E-value=0.00028  Score=65.42  Aligned_cols=116  Identities=19%  Similarity=0.199  Sum_probs=58.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCC----CCCcceecCCCcccCCCCC---------------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDI----APGGQLTTTSDVENFPGFP---------------  114 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~----~~gg~~~~~~~~~~~~~~~---------------  114 (382)
                      ...++|+|||||.++.+++..|.+.+.  +|+++-+......    .....+..+.....|...|               
T Consensus       188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~~~~~d~s~f~ne~f~P~~v~~f~~l~~~~R~~~l~~~~~~n  267 (341)
T PF13434_consen  188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPGFFPMDDSPFVNEIFSPEYVDYFYSLPDEERRELLREQRHTN  267 (341)
T ss_dssp             ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS-EB----CCHHGGGSHHHHHHHHTS-HHHHHHHHHHTGGGT
T ss_pred             cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCccCCCccccchhhhcCchhhhhhhcCCHHHHHHHHHHhHhhc
Confidence            456899999999999999999999874  7999985321110    1111111110000010111               


Q ss_pred             -CCCChHHHHHHH------HHHHHHcCcEEEEe-eEEEEEecCC-cEEEEECC------eEEEcCEEEEccCC
Q 016820          115 -QGILGGDLMDRC------RNQSLRFGTQIFTE-TVSKVDFKSR-PFKVFTDS------KSVLADTVIVATGA  172 (382)
Q Consensus       115 -~~~~~~~~~~~~------~~~~~~~gi~~~~~-~v~~i~~~~~-~~~v~~~~------~~~~~d~lvlA~G~  172 (382)
                       ..++ .++.+.+      ++...+..+.++.+ +|+++...++ .+.+....      ..+.+|.||+|||-
T Consensus       268 y~~i~-~~~l~~iy~~lY~~~v~g~~~~~l~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~D~VilATGy  339 (341)
T PF13434_consen  268 YGGID-PDLLEAIYDRLYEQRVSGRGRLRLLPNTEVTSAEQDGDGGVRLTLRHRQTGEEETLEVDAVILATGY  339 (341)
T ss_dssp             SSEB--HHHHHHHHHHHHHHHHHT---SEEETTEEEEEEEEES-SSEEEEEEETTT--EEEEEESEEEE---E
T ss_pred             CCCCC-HHHHHHHHHHHHHHHhcCCCCeEEeCCCEEEEEEECCCCEEEEEEEECCCCCeEEEecCEEEEcCCc
Confidence             1112 2222222      11222335777766 6889988874 77776532      45899999999994

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.42  E-value=0.0025  Score=57.94  Aligned_cols=125  Identities=18%  Similarity=0.240  Sum_probs=76.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC-------------c------chHHHH---HHhccCCCcEEEcCce
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF-------------R------ASKIMQ---NRALTNPKIDVIWNSV  263 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~-------------~------~~~~~~---~~~l~~~gv~~~~~~~  263 (382)
                      ..|+|||+|+.|+-.|-++.+.+.+++++......             +      ....+.   ++.....++++.. ..
T Consensus         4 ~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~~~venypg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~   82 (305)
T COG0492           4 YDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKTTDVENYPGFPGGILGPELMEQMKEQAEKFGVEIVE-DE   82 (305)
T ss_pred             eeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccceeecCCCCCccCCchHHHHHHHHHHHhhcCeEEEE-EE
Confidence            46999999999999999999999774444333211             0      011221   2334457888876 66


Q ss_pred             eEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCC--c-eeeCCCCCcCCCCceEEec
Q 016820          264 VLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG--Y-IITKPGTTHTSVPGVFAAG  340 (382)
Q Consensus       264 v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g--~-i~vd~~~~~t~~~~vya~G  340 (382)
                      +.+++..++.     +.+.+   +++. +.++.||+|||..+...-+.....+-..|  + ..+|. ++.  .++|.++|
T Consensus        83 v~~v~~~~~~-----F~v~t---~~~~-~~ak~vIiAtG~~~~~~~~~~e~e~~g~gv~yc~~cdg-~~~--~k~v~ViG  150 (305)
T COG0492          83 VEKVELEGGP-----FKVKT---DKGT-YEAKAVIIATGAGARKLGVPGEEEFEGKGVSYCATCDG-FFK--GKDVVVIG  150 (305)
T ss_pred             EEEEeecCce-----EEEEE---CCCe-EEEeEEEECcCCcccCCCCCcchhhcCCceEEeeecCc-ccc--CCeEEEEc
Confidence            7777776631     55554   3334 99999999999988665332111222222  2 22333 232  34888888


Q ss_pred             ccC
Q 016820          341 DVQ  343 (382)
Q Consensus       341 D~~  343 (382)
                      .-.
T Consensus       151 gG~  153 (305)
T COG0492         151 GGD  153 (305)
T ss_pred             CCH
Confidence            753

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.41  E-value=0.0012  Score=62.88  Aligned_cols=92  Identities=16%  Similarity=0.059  Sum_probs=64.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcc----------------------h-------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRA----------------------S-------------------  243 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~----------------------~-------------------  243 (382)
                      +|+|||+|+.|+-+|..|.+.|  .+|+++++.+....                      .                   
T Consensus         3 dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   82 (403)
T PRK07333          3 DVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPAGAWSRDPRASAIAAAARRMLEALGVWDEIAPEAQPITDMVITDSR   82 (403)
T ss_pred             CEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCcccCCCCcceEEecHHHHHHHHHCCChhhhhhhcCcccEEEEEeCC
Confidence            5899999999999999999985  89999998653100                      0                   


Q ss_pred             -------------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          244 -------------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       244 -------------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                                                     ...+.+.+.+.|++++.++++++++.++++     +.+..   .++..+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~-----v~v~~---~~g~~~  154 (403)
T PRK07333         83 TSDPVRPVFLTFEGEVEPGEPFAHMVENRVLINALRKRAEALGIDLREATSVTDFETRDEG-----VTVTL---SDGSVL  154 (403)
T ss_pred             CCCCCccceEEecccccCCCccEEEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCE-----EEEEE---CCCCEE
Confidence                                           000011233457888888888888776653     33433   223568


Q ss_pred             ecCeEEEeeCCCCC
Q 016820          293 KVSGLFFAIGHEPA  306 (382)
Q Consensus       293 ~~D~vi~~~G~~p~  306 (382)
                      .+|+||.|.|..+.
T Consensus       155 ~ad~vI~AdG~~S~  168 (403)
T PRK07333        155 EARLLVAADGARSK  168 (403)
T ss_pred             EeCEEEEcCCCChH
Confidence            99999999998754

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.41  E-value=0.0003  Score=66.68  Aligned_cols=92  Identities=16%  Similarity=0.169  Sum_probs=63.7

Q ss_pred             chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHh--ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA--LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~--l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      ..++|+...|.+.+.+=.+++......-+..-..-+  ..+.|-.+..+.++.++..+++|+ +.++++.+..+|++.++
T Consensus       196 ~~alE~fPmL~~~~L~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~k-v~Ga~~rD~iTG~e~~I  274 (680)
T KOG0042|consen  196 KEALEIFPMLRKDNLKGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGK-VIGARARDHITGKEYEI  274 (680)
T ss_pred             HHHHHhCccccccCceeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCc-eeeeEEEEeecCcEEEE
Confidence            467888888888776666665555443222211111  234677777777888888877774 66788888888988999


Q ss_pred             ecCeEEEeeCCCCCh
Q 016820          293 KVSGLFFAIGHEPAT  307 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~  307 (382)
                      .+..||-+||--.+.
T Consensus       275 ~Ak~VVNATGpfsDs  289 (680)
T KOG0042|consen  275 RAKVVVNATGPFSDS  289 (680)
T ss_pred             EEEEEEeCCCCccHH
Confidence            999999999866543

>PRK07045 putative monooxygenase; Reviewed

Probab=97.40  E-value=0.0015  Score=62.05  Aligned_cols=94  Identities=16%  Similarity=0.256  Sum_probs=65.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----------h--------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------S--------------------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------~--------------------------------  243 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..          .                                
T Consensus         6 ~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~l~~~~~~~L~~lGl~~~~~~~~~~~~~~~~~~~~g~~   85 (388)
T PRK07045          6 VDVLINGSGIAGVALAHLLGARGHSVTVVERAARNRAQNGADLLKPSGIGVVRAMGLLDDVFAAGGLRRDAMRLYHDKEL   85 (388)
T ss_pred             eEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcccCCCcccccCccHHHHHHHcCCHHHHHhcccccccceEEecCCcE
Confidence            4799999999999999999999999999987774400          0                                


Q ss_pred             ------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEE
Q 016820          244 ------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFF  299 (382)
Q Consensus       244 ------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~  299 (382)
                                              +.+.+++-...|+++++++++..++.++++. +..+++.+   +  .++.+|++|-
T Consensus        86 ~~~~~~~~~~~~g~~~~i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~-~~~v~~~~---g--~~~~~~~vIg  159 (388)
T PRK07045         86 IASLDYRSASALGYFILIPCEQLRRLLLAKLDGLPNVRLRFETSIERIERDADGT-VTSVTLSD---G--ERVAPTVLVG  159 (388)
T ss_pred             EEEecCCccccCCceEEccHHHHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCc-EEEEEeCC---C--CEEECCEEEE
Confidence                                    0000111123578888899999998876542 22344332   3  4688999998


Q ss_pred             eeCCCC
Q 016820          300 AIGHEP  305 (382)
Q Consensus       300 ~~G~~p  305 (382)
                      |.|...
T Consensus       160 ADG~~S  165 (388)
T PRK07045        160 ADGARS  165 (388)
T ss_pred             CCCCCh
Confidence            888775

>PLN02463 lycopene beta cyclase

Probab=97.38  E-value=0.0013  Score=63.30  Aligned_cols=91  Identities=19%  Similarity=0.154  Sum_probs=63.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------c-------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------A-------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------~-------------------------------------  242 (382)
                      -+|+|||+|+.|+.+|..|.+.|.+|.++++.+...      .                                     
T Consensus        29 ~DVvIVGaGpAGLalA~~La~~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~~~~y  108 (447)
T PLN02463         29 VDLVVVGGGPAGLAVAQQVSEAGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDLDRPY  108 (447)
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccccCcc
Confidence            479999999999999999999999999998765210      0                                     


Q ss_pred             ----h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          243 ----S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       243 ----~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                          .    ..+. +.+.+.|++++ ..++.+++.++++     +.+..   .++..+.+|.||.|+|..+.
T Consensus       109 ~~V~R~~L~~~Ll-~~~~~~GV~~~-~~~V~~I~~~~~~-----~~V~~---~dG~~i~A~lVI~AdG~~s~  170 (447)
T PLN02463        109 GRVNRKKLKSKML-ERCIANGVQFH-QAKVKKVVHEESK-----SLVVC---DDGVKIQASLVLDATGFSRC  170 (447)
T ss_pred             eeEEHHHHHHHHH-HHHhhcCCEEE-eeEEEEEEEcCCe-----EEEEE---CCCCEEEcCEEEECcCCCcC
Confidence                0    0111 11234688886 5688888877653     33332   22357999999999987653

>PLN02487 zeta-carotene desaturase

Probab=97.37  E-value=0.00029  Score=69.64  Aligned_cols=42  Identities=29%  Similarity=0.344  Sum_probs=36.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..++|+|||||++|+++|+.|++.|++|+|+|    .....||.+.
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E----~~~~~gG~~~  115 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLDQGHEVDIYE----SRPFIGGKVG  115 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeeEEEe----cCCCCCCcee
Confidence            34699999999999999999999999999999    5556677654

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=97.37  E-value=0.00025  Score=65.36  Aligned_cols=43  Identities=30%  Similarity=0.409  Sum_probs=37.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCe--EEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKP--ILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v--~lie~~~~~~~~~gg~~~~  103 (382)
                      ..++|+|||||.+||++|++|++++.++  +|+|    .+...||.+..
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~E----a~~RvGGwirS   54 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFE----ASPRVGGWIRS   54 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEe----cCCcccceeee
Confidence            3479999999999999999999997665  5599    77788998876

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=97.37  E-value=0.0023  Score=65.10  Aligned_cols=94  Identities=19%  Similarity=0.192  Sum_probs=62.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++|+|||||..|+.+|..+.++|. +|+++.+.               ....++.     ...+     .+.+.+.|++
T Consensus       468 gk~VvVIGgG~~a~d~A~~a~r~ga~~Vt~i~~~---------------~~~~~~~-----~~~e-----~~~~~~~Gv~  522 (654)
T PRK12769        468 GLNVVVLGGGDTAMDCVRTALRHGASNVTCAYRR---------------DEANMPG-----SKKE-----VKNAREEGAN  522 (654)
T ss_pred             CCeEEEECCcHHHHHHHHHHHHcCCCeEEEeEec---------------CCCCCCC-----CHHH-----HHHHHHcCCe
Confidence            4689999999999999999999997 69998831               0001111     1111     2345677999


Q ss_pred             EEEe-eEEEEEec-CCcE---EEE-E----------------CC--eEEEcCEEEEccCCCCcC
Q 016820          137 IFTE-TVSKVDFK-SRPF---KVF-T----------------DS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       137 ~~~~-~v~~i~~~-~~~~---~v~-~----------------~~--~~~~~d~lvlA~G~~~~~  176 (382)
                      ++.+ .+.++..+ ++.+   .+. .                .+  ..+.+|.||+|+|..|+.
T Consensus       523 ~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~~p~~  586 (654)
T PRK12769        523 FEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGFNPHG  586 (654)
T ss_pred             EEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccCCCCc
Confidence            9887 56666532 2222   211 0                11  259999999999998874

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.37  E-value=0.0018  Score=61.51  Aligned_cols=93  Identities=19%  Similarity=0.272  Sum_probs=68.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC-CCC--------------------cc----------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR-DSF--------------------RA----------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~-~~~--------------------~~----------------------  242 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++. ..+                    ..                      
T Consensus         3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~~~~i~~~~~~~~~~~~~~~~~~   82 (387)
T COG0654           3 LDVAIVGAGPAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGLWDRLEALGVPPLHVMVVDDGGR   82 (387)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCChhhhhhccCCceeeEEEecCCc
Confidence            57999999999999999999999999999998 222                    00                      


Q ss_pred             ------------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEE
Q 016820          243 ------------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF  298 (382)
Q Consensus       243 ------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi  298 (382)
                                              ...+.+...+..+|+++.++.++.++.++++  +. ++++.  ++  .++.+|++|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~--v~-v~l~~--dG--~~~~a~llV  155 (387)
T COG0654          83 RLLIFDAAELGRGALGYVVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGDG--VT-VTLSF--DG--ETLDADLLV  155 (387)
T ss_pred             eeEEecccccCCCcceEEeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCc--eE-EEEcC--CC--cEEecCEEE
Confidence                                    0111122223455999999999999998864  22 44441  24  489999999


Q ss_pred             EeeCCCC
Q 016820          299 FAIGHEP  305 (382)
Q Consensus       299 ~~~G~~p  305 (382)
                      -|-|...
T Consensus       156 gADG~~S  162 (387)
T COG0654         156 GADGANS  162 (387)
T ss_pred             ECCCCch
Confidence            9998664

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.34  E-value=0.0019  Score=61.69  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~   35 (405)
T PRK05714          3 ADLLIVGAGMVGSALALALQGSGLEVLLLDGGP   35 (405)
T ss_pred             ccEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            369999999999999999999999999999865

>PLN02612 phytoene desaturase

Probab=97.33  E-value=0.00029  Score=70.17  Aligned_cols=43  Identities=40%  Similarity=0.505  Sum_probs=36.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .+++|+|||||++|+++|+.|.+.|++|+|+|    ....+||....
T Consensus        92 ~~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e----~~~~~gG~~~s  134 (567)
T PLN02612         92 KPLKVVIAGAGLAGLSTAKYLADAGHKPILLE----ARDVLGGKVAA  134 (567)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEe----cCCCCCCccee
Confidence            45789999999999999999999999999999    44556776543

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.33  E-value=0.0021  Score=60.90  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=30.4

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus         1 dViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~~   33 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALARSGLKIALIEATPA   33 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhcCCCEEEEEeCCCc
Confidence            489999999999999999999999999998863

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK08013 oxidoreductase; Provisional

Probab=97.33  E-value=0.0021  Score=61.31  Aligned_cols=34  Identities=24%  Similarity=0.333  Sum_probs=31.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus         4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~   37 (400)
T PRK08013          4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVP   37 (400)
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCC
Confidence            4799999999999999999999999999997654

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.32  E-value=0.00022  Score=68.56  Aligned_cols=93  Identities=19%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------chH-----------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------ASK-----------  244 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------~~~-----------  244 (382)
                      .|+|||+|+.|+-.|...++.|.+|.++++.+.+.                               ...           
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~~~~~~~~~~~~~~~~~~gi~~e~~~~~~~~~~~~~~~~~~   80 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATSGGVSPFDGNHDEDQVIGGIFREFLNRLRARGGYPQEDRYG   80 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGGSSS-EETTEEHHHHHHHHHHHHHHHST-------------
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceECCcCChhhcchhhccCCCHHHHHHHHHhhhcccccccccc
Confidence            48999999999999999999999999999888661                               000           


Q ss_pred             -------------HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          245 -------------IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       245 -------------~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                                   ....+++.+.|+++++++.+.++..+++  .+.+|.+.+.. + ..++.++.+|.|||-
T Consensus        81 ~~~~~~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~~--~i~~V~~~~~~-g-~~~i~A~~~IDaTG~  148 (428)
T PF12831_consen   81 WVSNVPFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDGG--RITGVIVETKS-G-RKEIRAKVFIDATGD  148 (428)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc--ccccccccccc-c-ccccccccccccccc
Confidence                         0112345567999999999999998753  37778887533 3 578999999999994

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=97.30  E-value=0.00021  Score=65.19  Aligned_cols=70  Identities=17%  Similarity=0.195  Sum_probs=50.1

Q ss_pred             HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC-ceEEEecCeEEEeeCCCCChhhhc-ccc
Q 016820          245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG-QVSDLKVSGLFFAIGHEPATKFVD-GQL  314 (382)
Q Consensus       245 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~-~~~~~~~D~vi~~~G~~p~~~~~~-~~~  314 (382)
                      ..+..++++.|++++++++|++|..+.++...++|++.+.... ....+..+.||+|.|.--.+.+|. +++
T Consensus       197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl~SGi  268 (296)
T PF00732_consen  197 TYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLLRSGI  268 (296)
T ss_dssp             HHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHHHTTE
T ss_pred             cccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhccccc
Confidence            3345667777999999999999977655556888999875433 235677899999999876665553 444

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.29  E-value=0.001  Score=64.48  Aligned_cols=81  Identities=17%  Similarity=0.170  Sum_probs=55.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|+|+|.+|+++|..|++.|++|+++|+.                           ..+.+.+. .+.+.+.+++
T Consensus         4 ~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~---------------------------~~~~~~~~-~~~l~~~~~~   55 (450)
T PRK14106          4 KGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEK---------------------------EEDQLKEA-LEELGELGIE   55 (450)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC---------------------------chHHHHHH-HHHHHhcCCE
Confidence            3478999999999999999999999999999931                           01122222 2334566777


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+...+             ...-.+|.||+++|..+..|.
T Consensus        56 ~~~~~~~~-------------~~~~~~d~vv~~~g~~~~~~~   84 (450)
T PRK14106         56 LVLGEYPE-------------EFLEGVDLVVVSPGVPLDSPP   84 (450)
T ss_pred             EEeCCcch-------------hHhhcCCEEEECCCCCCCCHH
Confidence            65553322             011247999999998776653

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.28  E-value=0.0032  Score=59.75  Aligned_cols=35  Identities=29%  Similarity=0.492  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus         7 ~~dViIVGaG~~Gl~~A~~L~~~G~~v~liE~~~~   41 (388)
T PRK07494          7 HTDIAVIGGGPAGLAAAIALARAGASVALVAPEPP   41 (388)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCeEEEEeCCCC
Confidence            34799999999999999999999999999998754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.28  E-value=0.0023  Score=60.69  Aligned_cols=33  Identities=30%  Similarity=0.391  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|+.|.-+|..|.+.|.+|+++++.+
T Consensus         4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            369999999999999999999999999999764

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=97.27  E-value=0.00084  Score=65.66  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=62.4

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                      ..+++++|+|+|.+|+++|..|.+.|.+|+++++.+... ...+ .+.+++.|++++.+..+.                 
T Consensus        14 ~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~-~~~~-~~~l~~~gv~~~~~~~~~-----------------   74 (480)
T PRK01438         14 WQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDER-HRAL-AAILEALGATVRLGPGPT-----------------   74 (480)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhh-hHHH-HHHHHHcCCEEEECCCcc-----------------
Confidence            347899999999999999999999999999998765422 2222 244667798887664321                 


Q ss_pred             eccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          283 NLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                             ....+|.||.++|..|+.+++.
T Consensus        75 -------~~~~~D~Vv~s~Gi~~~~~~~~   96 (480)
T PRK01438         75 -------LPEDTDLVVTSPGWRPDAPLLA   96 (480)
T ss_pred             -------ccCCCCEEEECCCcCCCCHHHH
Confidence                   1245899999999999988654

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.24  E-value=0.0035  Score=59.58  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|+.|+-+|..|.+.|.+|+++++.+
T Consensus         5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~~~   38 (391)
T PRK08020          5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEHAA   38 (391)
T ss_pred             cccEEEECcCHHHHHHHHHHhcCCCEEEEEcCCC
Confidence            3579999999999999999999999999998764

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.23  E-value=0.003  Score=60.75  Aligned_cols=34  Identities=26%  Similarity=0.398  Sum_probs=30.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus         6 ~DViIVGaGpAG~~aA~~La~~G~~V~llEr~~~   39 (428)
T PRK10157          6 FDAIIVGAGLAGSVAALVLAREGAQVLVIERGNS   39 (428)
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCeEEEEEcCCC
Confidence            4799999999999999999999999999987653

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.23  E-value=0.003  Score=60.37  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=30.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.
T Consensus         5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            57999999999999999999999999999985

>PLN03000 amine oxidase

Probab=97.23  E-value=0.00044  Score=70.70  Aligned_cols=43  Identities=33%  Similarity=0.452  Sum_probs=37.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ...+|+|||||++|+.+|..|.+.|++|+|+|    ....+||++..
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE----~~~riGGRi~T  225 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMRFGFKVTVLE----GRKRPGGRVYT  225 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCcEEEEE----ccCcCCCCcce
Confidence            35899999999999999999999999999999    55566776543

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.23  E-value=0.00035  Score=66.98  Aligned_cols=43  Identities=14%  Similarity=0.130  Sum_probs=38.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||+|||+|.+|+.+|..|++.|.+|.++|    .+...||.+..
T Consensus         3 ~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD----~n~~yGG~~as   45 (443)
T PTZ00363          3 ETYDVIVCGTGLKECILSGLLSVNGKKVLHMD----RNPYYGGESAS   45 (443)
T ss_pred             CcceEEEECCChHHHHHHhhhhhCCCEEEEec----CCCCcCccccc
Confidence            35899999999999999999999999999999    66677877653

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.22  E-value=0.0033  Score=59.75  Aligned_cols=32  Identities=25%  Similarity=0.352  Sum_probs=29.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRR  237 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~  237 (382)
                      .+|+|||+|+.|+-+|..|.+.   |.+|+++++.
T Consensus         4 ~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          4 MDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4799999999999999999998   9999999984

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.22  E-value=0.0033  Score=59.40  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=29.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.
T Consensus         3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~~   33 (374)
T PRK06617          3 NTVILGCGLSGMLTALSFAQKGIKTTIFESK   33 (374)
T ss_pred             cEEEECCCHHHHHHHHHHHcCCCeEEEecCC
Confidence            5999999999999999999999999999975

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.22  E-value=0.0026  Score=60.60  Aligned_cols=89  Identities=17%  Similarity=0.219  Sum_probs=67.5

Q ss_pred             EEECCcHHHHHHH-HHHH----HcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           62 CIIGSGPAAHTAA-IYAA----RAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        62 vIIGaG~aGl~~A-~~l~----~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      +|++-|..|++.+ ..++    ++|.+|++++.                       .|..+...++.+.+.+.+++.|++
T Consensus       219 ~V~~PavIGle~a~~v~~~L~~~LG~~V~~vp~-----------------------~ppslpG~rL~~aL~~~l~~~Gv~  275 (422)
T PRK05329        219 AVLLPAVLGLDDDAAVLAELEEALGCPVFELPT-----------------------LPPSVPGLRLQNALRRAFERLGGR  275 (422)
T ss_pred             EEEECceecCCChHHHHHHHHHHHCCCEEEeCC-----------------------CCCCCchHHHHHHHHHHHHhCCCE
Confidence            7789999999998 5554    46999999982                       122334457888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEE-EE-CC--eEEEcCEEEEccCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKV-FT-DS--KSVLADTVIVATGAV  173 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v-~~-~~--~~~~~d~lvlA~G~~  173 (382)
                      ++.+ +|.+++.+++.+.. .+ ++  ..+.+|.+|+|+|+.
T Consensus       276 I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        276 IMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             EEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            9998 79999877665543 22 22  348999999999985

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.20  E-value=0.0036  Score=59.37  Aligned_cols=34  Identities=26%  Similarity=0.343  Sum_probs=31.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus         6 ~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~~~~   39 (388)
T PRK07608          6 FDVVVVGGGLVGASLALALAQSGLRVALLAPRAP   39 (388)
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            4699999999999999999999999999987754

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=97.20  E-value=0.0039  Score=65.31  Aligned_cols=94  Identities=23%  Similarity=0.240  Sum_probs=59.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-EL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ..++|+|||||..|+.+|..+.+. |. +|+++.+..               ....+.     ...++.+     +.+.|
T Consensus       665 ~GK~VVVIGGGnvAmD~Ar~a~Rl~Ga~kVtLVyRr~---------------~~~Mpa-----~~eEl~~-----aleeG  719 (1012)
T TIGR03315       665 LGKHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRT---------------KRYMPA-----SREELEE-----ALEDG  719 (1012)
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHhCCCceEEEEEccC---------------cccccc-----CHHHHHH-----HHHcC
Confidence            457999999999999999999887 75 799998420               001111     1223222     22468


Q ss_pred             cEEEEe-eEEEEEecCCcEEE-----------------EECC-eEEEcCEEEEccCCCCcCC
Q 016820          135 TQIFTE-TVSKVDFKSRPFKV-----------------FTDS-KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v-----------------~~~~-~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++++.. .+..++  ++.+.+                 ..+. .++.+|.||+|+|..|+..
T Consensus       720 Ve~~~~~~p~~I~--~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~Pnt~  779 (1012)
T TIGR03315       720 VDFKELLSPESFE--DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQVDTD  779 (1012)
T ss_pred             CEEEeCCceEEEE--CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCcCChH
Confidence            988776 455554  122211                 1111 2589999999999998654

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK13984 putative oxidoreductase; Provisional

Probab=97.19  E-value=0.0036  Score=63.07  Aligned_cols=98  Identities=21%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC------CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL------KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSL  131 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~------~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (382)
                      .++|+|||||..|+.+|..|.+++.      +|+++...                 .....++.  ...++.+     +.
T Consensus       418 ~k~VvVIGGG~~g~e~A~~l~r~~~~~~g~~~V~v~~~~-----------------r~~~~~~~--~~~e~~~-----~~  473 (604)
T PRK13984        418 PRSLVVIGGGNVAMDIARSMARLQKMEYGEVNVKVTSLE-----------------RTFEEMPA--DMEEIEE-----GL  473 (604)
T ss_pred             CCcEEEECCchHHHHHHHHHHhccccccCceEEEEeccc-----------------cCcccCCC--CHHHHHH-----HH
Confidence            4799999999999999999998853      66776410                 00111111  1222222     23


Q ss_pred             HcCcEEEEe-eEEEEEecCCcEE---EE-----------------E-CCeEEEcCEEEEccCCCCcCCCC
Q 016820          132 RFGTQIFTE-TVSKVDFKSRPFK---VF-----------------T-DSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       132 ~~gi~~~~~-~v~~i~~~~~~~~---v~-----------------~-~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      +.|++++.+ .+..+..+++.+.   +.                 . +...+.+|.||+|+|..|+...+
T Consensus       474 ~~GV~i~~~~~~~~i~~~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~p~~~~l  543 (604)
T PRK13984        474 EEGVVIYPGWGPMEVVIENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQAPDYSYL  543 (604)
T ss_pred             HcCCEEEeCCCCEEEEccCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCCCChhhh
Confidence            569998876 3545543332221   11                 0 12359999999999999875543

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.18  E-value=0.00066  Score=66.32  Aligned_cols=86  Identities=22%  Similarity=0.326  Sum_probs=61.4

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------chHHHH---HHhccCCCcEEEcCceeEEEEe
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------ASKIMQ---NRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~~~~~---~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      .+++++|||+|+.|+.+|..|.+.|.+|+++.+.+.+.           ......   .+.+++.||+++.++.+..   
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~---  218 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLMYGIPNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV---  218 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceeeccCCCccCCHHHHHHHHHHHHhCCCEEECCCEeCC---
Confidence            46899999999999999999999999999998776431           111121   2345678999998887631   


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC-CC
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE-PA  306 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~-p~  306 (382)
                       +       +.      .+.....+|.|++++|.. |.
T Consensus       219 -~-------~~------~~~~~~~~d~VilAtGa~~~~  242 (485)
T TIGR01317       219 -D-------IS------ADELKEQFDAVVLAGGATKPR  242 (485)
T ss_pred             -c-------cC------HHHHHhhCCEEEEccCCCCCC
Confidence             0       11      011235789999999998 44

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=97.14  E-value=0.0047  Score=59.58  Aligned_cols=135  Identities=22%  Similarity=0.240  Sum_probs=80.0

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCC--------------------------cc-----------hHH
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSF--------------------------RA-----------SKI  245 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~--------------------------~~-----------~~~  245 (382)
                      ...+|+|||+|.+|+-++..|.+.|.. +.+++++..+                          +.           ...
T Consensus         7 ~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~~~~   86 (443)
T COG2072           7 THTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAEIKD   86 (443)
T ss_pred             CcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCcccHHH
Confidence            346899999999999999999999988 9999888644                          00           122


Q ss_pred             HHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC--CChhhhcccccccCCCc
Q 016820          246 MQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVDGQLDLHSDGY  321 (382)
Q Consensus       246 ~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~--p~~~~~~~~~~~~~~g~  321 (382)
                      .....+++.++  ++..++.+..+..+.+++ ...|+++.   +...++.+|.||+|||.-  |+.+-+. ++.. -.|.
T Consensus        87 y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~-~w~V~~~~---~~~~~~~a~~vV~ATG~~~~P~iP~~~-G~~~-f~g~  160 (443)
T COG2072          87 YIKDYLEKYGLRFQIRFNTRVEVADWDEDTK-RWTVTTSD---GGTGELTADFVVVATGHLSEPYIPDFA-GLDE-FKGR  160 (443)
T ss_pred             HHHHHHHHcCceeEEEcccceEEEEecCCCC-eEEEEEcC---CCeeeEecCEEEEeecCCCCCCCCCCC-CccC-CCce
Confidence            23344554442  344456666666665543 44455544   322227899999999993  3333222 2211 1222


Q ss_pred             eeeCC---CCCcCCCCceEEecccCC
Q 016820          322 IITKP---GTTHTSVPGVFAAGDVQD  344 (382)
Q Consensus       322 i~vd~---~~~~t~~~~vya~GD~~~  344 (382)
                      +.--.   +...-.-++|-+||--++
T Consensus       161 ~~HS~~~~~~~~~~GKrV~VIG~GaS  186 (443)
T COG2072         161 ILHSADWPNPEDLRGKRVLVIGAGAS  186 (443)
T ss_pred             EEchhcCCCccccCCCeEEEECCCcc
Confidence            21111   011224578999998764

>PRK07538 hypothetical protein; Provisional

Probab=97.13  E-value=0.0045  Score=59.33  Aligned_cols=34  Identities=21%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            6999999999999999999999999999987654

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.11  E-value=0.0058  Score=60.72  Aligned_cols=52  Identities=19%  Similarity=0.281  Sum_probs=37.8

Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      .+.|++++.++.+..+..++++  +.++++.+..++++..+.+|.||.|+|.-.
T Consensus       160 ~~~Ga~i~~~t~V~~i~~~~~~--v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa  211 (546)
T PRK11101        160 KEHGAQILTYHEVTGLIREGDT--VCGVRVRDHLTGETQEIHAPVVVNAAGIWG  211 (546)
T ss_pred             HhCCCEEEeccEEEEEEEcCCe--EEEEEEEEcCCCcEEEEECCEEEECCChhH
Confidence            3568888888899998876542  556777654445456799999999998643

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.10  E-value=0.0052  Score=58.46  Aligned_cols=96  Identities=13%  Similarity=0.133  Sum_probs=66.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  241 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+...                                            
T Consensus         3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~a~~l~~~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~g~   82 (392)
T PRK08243          3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSREYVEGRIRAGVLEQGTVDLLREAGVGERMDREGLVHDGIELRFDGR   82 (392)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCccccccccceeEECHhHHHHHHHcCChHHHHhcCCccCcEEEEECCE
Confidence            569999999999999999999999999999886410                                            


Q ss_pred             -----c-------------hHHHHHHh---ccCCCcEEEcCceeEEEEe-cCCceeeeeEEEEeccCCceEEEecCeEEE
Q 016820          242 -----A-------------SKIMQNRA---LTNPKIDVIWNSVVLEAYG-EGDKKVLGGLKVKNLVTGQVSDLKVSGLFF  299 (382)
Q Consensus       242 -----~-------------~~~~~~~~---l~~~gv~~~~~~~v~~i~~-~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~  299 (382)
                           .             ...+.+.+   ..+.|+++++++++.+++. ++++   ..|.+..  +++..++.+|+||-
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~~~---~~V~~~~--~G~~~~i~ad~vVg  157 (392)
T PRK08243         83 RHRIDLTELTGGRAVTVYGQTEVTRDLMAARLAAGGPIRFEASDVALHDFDSDR---PYVTYEK--DGEEHRLDCDFIAG  157 (392)
T ss_pred             EEEeccccccCCceEEEeCcHHHHHHHHHHHHhCCCeEEEeeeEEEEEecCCCc---eEEEEEc--CCeEEEEEeCEEEE
Confidence                 0             00001111   2346888888988888876 3332   2244431  24445789999999


Q ss_pred             eeCCCCC
Q 016820          300 AIGHEPA  306 (382)
Q Consensus       300 ~~G~~p~  306 (382)
                      |-|....
T Consensus       158 ADG~~S~  164 (392)
T PRK08243        158 CDGFHGV  164 (392)
T ss_pred             CCCCCCc
Confidence            9888754

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.09  E-value=0.0054  Score=58.06  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=31.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~  240 (382)
                      -.|+|||+|.+|+-++.+|.+..  .+|+++++...+
T Consensus         4 ~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           4 YDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             eeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            46999999999999999999998  899999987766

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.09  E-value=0.0039  Score=61.67  Aligned_cols=32  Identities=25%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      -.|+|||+|+.|++.|..+++.|.+|.++++.
T Consensus         5 yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~   36 (618)
T PRK05192          5 YDVIVVGGGHAGCEAALAAARMGAKTLLLTHN   36 (618)
T ss_pred             ceEEEECchHHHHHHHHHHHHcCCcEEEEecc
Confidence            46999999999999999999999999999887

>PRK10015 oxidoreductase; Provisional

Probab=97.09  E-value=0.005  Score=59.25  Aligned_cols=34  Identities=29%  Similarity=0.389  Sum_probs=30.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      -.|+|||+|+.|+-+|..|++.|.+|.++++.+.
T Consensus         6 ~DViIVGgGpAG~~aA~~LA~~G~~VlliEr~~~   39 (429)
T PRK10015          6 FDAIVVGAGVAGSVAALVMARAGLDVLVIERGDS   39 (429)
T ss_pred             cCEEEECcCHHHHHHHHHHHhCCCeEEEEecCCC
Confidence            4799999999999999999999999999987654

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=97.04  E-value=0.0025  Score=56.65  Aligned_cols=34  Identities=18%  Similarity=0.189  Sum_probs=31.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~   90 (382)
                      ..+|+||||||..|++.|++|.-.  +.+|.++|+.
T Consensus        47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke   82 (453)
T KOG2665|consen   47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKE   82 (453)
T ss_pred             ccccEEEECCceeehhhhHHHhhcCCCceEEeeehh
Confidence            469999999999999999999877  8999999974

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.02  E-value=0.0036  Score=66.36  Aligned_cols=96  Identities=22%  Similarity=0.184  Sum_probs=61.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..++|+|||||..|+.+|..+.++|.+ |+++.+.               ....++.     ...+     .+.+.+.||
T Consensus       570 ~Gk~VvVIGgG~tA~D~A~~a~rlGa~~Vtiv~rr---------------~~~em~a-----~~~e-----~~~a~eeGI  624 (1006)
T PRK12775        570 LGKSVVVIGAGNTAMDCLRVAKRLGAPTVRCVYRR---------------SEAEAPA-----RIEE-----IRHAKEEGI  624 (1006)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeec---------------CcccCCC-----CHHH-----HHHHHhCCC
Confidence            457999999999999999999999985 6777631               0001111     1111     123566799


Q ss_pred             EEEEe-eEEEEEec-CCcE---EEE---E-------------CC--eEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFK-SRPF---KVF---T-------------DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~-~~~~---~v~---~-------------~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.. .+..+..+ ++.+   .+.   .             .+  .++.+|.||+|.|..|+..
T Consensus       625 ~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~~p~~~  689 (1006)
T PRK12775        625 DFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGTKANPI  689 (1006)
T ss_pred             EEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCcCCChh
Confidence            98877 45566432 2222   111   0             11  2599999999999998754

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=97.01  E-value=0.004  Score=60.27  Aligned_cols=34  Identities=26%  Similarity=0.413  Sum_probs=26.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC---CEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG---SKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g---~~v~~~~~~~~~  240 (382)
                      +|+|||+|..|.-.|..|.+.+   .+|++++.....
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCCCC
Confidence            5899999999999999999988   789999887543

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=97.01  E-value=0.011  Score=55.23  Aligned_cols=60  Identities=20%  Similarity=0.269  Sum_probs=47.6

Q ss_pred             CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCC
Q 016820          113 FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVA  174 (382)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~  174 (382)
                      ||......++.+.+...+++.||+++++ +|.+|+  ++.+.+.+..  ..+++|+||+|||+.+
T Consensus        79 fP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i~--~~~~~v~~~~~~~~~~a~~vIlAtGG~s  141 (376)
T TIGR03862        79 FPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGWQ--GGTLRFETPDGQSTIEADAVVLALGGAS  141 (376)
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEe--CCcEEEEECCCceEEecCEEEEcCCCcc
Confidence            4445567889999999999999999999 799993  3456776532  4699999999999864

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PLN02976 amine oxidase

Probab=96.99  E-value=0.0011  Score=70.57  Aligned_cols=43  Identities=30%  Similarity=0.441  Sum_probs=37.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..++|+|||||++|+.+|+.|.+.|++|+|+|    ....+||++..
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlE----a~~~vGGri~t  734 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQRQGFSVTVLE----ARSRIGGRVYT  734 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHHCCCcEEEEe----eccCCCCceee
Confidence            45899999999999999999999999999999    44567777654

>PRK09897 hypothetical protein; Provisional

Probab=96.98  E-value=0.0079  Score=59.10  Aligned_cols=35  Identities=20%  Similarity=0.288  Sum_probs=29.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~  240 (382)
                      ++|+|||+|+.|+-++..|.+.+  .+|++++++..+
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~   38 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEA   38 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCC
Confidence            47999999999999999998764  479999886544

>PRK11445 putative oxidoreductase; Provisional

Probab=96.96  E-value=0.0087  Score=56.00  Aligned_cols=93  Identities=23%  Similarity=0.223  Sum_probs=63.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------ch----HHH-------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------AS----KIM-------------------------  246 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~~----~~~-------------------------  246 (382)
                      +|+|||+|+.|+-+|..|.+. .+|+++++.+...           ..    ..+                         
T Consensus         3 dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~~~~~~~~~~g~~l~~~~~~~L~~lgl~~~~~~~~~~~~~~~~~~~~   81 (351)
T PRK11445          3 DVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQCGTEGFSKPCGGLLAPDAQKSFAKDGLTLPKDVIANPQIFAVKTIDL   81 (351)
T ss_pred             eEEEECCCHHHHHHHHHHhcc-CCEEEEECCCccccccccCcCcCccCHHHHHHHHHcCCCCCcceeeccccceeeEecc
Confidence            699999999999999999998 9999999776310           00    000                         


Q ss_pred             --------------H-----HHh---ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          247 --------------Q-----NRA---LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       247 --------------~-----~~~---l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                    .     .+.   ....|++++.++.+..+..++++     +.+....+++..++.+|++|.|.|..
T Consensus        82 ~~~~~~~~~~~~~~i~R~~~~~~L~~~~~~gv~v~~~~~v~~i~~~~~~-----~~v~~~~~g~~~~i~a~~vV~AdG~~  156 (351)
T PRK11445         82 ANSLTRNYQRSYINIDRHKFDLWLKSLIPASVEVYHNSLCRKIWREDDG-----YHVIFRADGWEQHITARYLVGADGAN  156 (351)
T ss_pred             cccchhhcCCCcccccHHHHHHHHHHHHhcCCEEEcCCEEEEEEEcCCE-----EEEEEecCCcEEEEEeCEEEECCCCC
Confidence                          0     001   11357888889899988876654     32321112433468999999999986


Q ss_pred             C
Q 016820          305 P  305 (382)
Q Consensus       305 p  305 (382)
                      .
T Consensus       157 S  157 (351)
T PRK11445        157 S  157 (351)
T ss_pred             c
Confidence            4

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=96.95  E-value=0.012  Score=59.67  Aligned_cols=95  Identities=17%  Similarity=0.164  Sum_probs=62.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..++|+|||+|..|+.+|..+.++|. +|+++.+.               ....++.     ...++.     .+.+.|+
T Consensus       450 ~gk~vvViGgG~~a~d~a~~~~~~Ga~~Vt~v~rr---------------~~~~~~~-----~~~e~~-----~a~~eGv  504 (639)
T PRK12809        450 EGKRVVVLGGGDTTMDCLRTSIRLNAASVTCAYRR---------------DEVSMPG-----SRKEVV-----NAREEGV  504 (639)
T ss_pred             CCCeEEEECCcHHHHHHHHHHHHcCCCeEEEeeec---------------CcccCCC-----CHHHHH-----HHHHcCC
Confidence            34789999999999999999999995 79999831               0001111     122222     2466799


Q ss_pred             EEEEe-eEEEEEecC-CcEE-EE---E------------------CCeEEEcCEEEEccCCCCcC
Q 016820          136 QIFTE-TVSKVDFKS-RPFK-VF---T------------------DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~-~~~~-v~---~------------------~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +++.. .+.+|..++ +.+. +.   .                  +...+.+|.||+|+|..|+.
T Consensus       505 ~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~~p~~  569 (639)
T PRK12809        505 EFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGFQAHA  569 (639)
T ss_pred             eEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCCCCCc
Confidence            98887 466765332 2221 11   0                  11258999999999998864

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=96.94  E-value=0.0082  Score=57.16  Aligned_cols=92  Identities=17%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      ..|+|||+|+.|.-+|..|++.|.+|.+++++..+..                                           
T Consensus         4 ~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~~~~~   83 (396)
T COG0644           4 YDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEKVAIE   83 (396)
T ss_pred             eeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCceEEe
Confidence            4699999999999999999999999999998776510                                           


Q ss_pred             --------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          243 --------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       243 --------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                                    .+++ .+..++.|.+++.++++..+..++++     +...... ++ .++.++++|.|.|...
T Consensus        84 ~~~~~~y~v~R~~fd~~L-a~~A~~aGae~~~~~~~~~~~~~~~~-----~~~~~~~-~~-~e~~a~~vI~AdG~~s  152 (396)
T COG0644          84 VPVGEGYIVDRAKFDKWL-AERAEEAGAELYPGTRVTGVIREDDG-----VVVGVRA-GD-DEVRAKVVIDADGVNS  152 (396)
T ss_pred             cCCCceEEEEhHHhhHHH-HHHHHHcCCEEEeceEEEEEEEeCCc-----EEEEEEc-CC-EEEEcCEEEECCCcch
Confidence                          0111 22345578999999999999888875     2222111 22 6899999999998654

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.94  E-value=0.0077  Score=57.73  Aligned_cols=34  Identities=29%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~  240 (382)
                      +|+|||+|..|+-+|..|.+.| .+|+++++.+.+
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            6999999999999999999998 499999988765

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=96.93  E-value=0.008  Score=57.21  Aligned_cols=33  Identities=21%  Similarity=0.476  Sum_probs=30.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~  238 (382)
                      -+|+|||+|.+|+-+|..|.+.  |.+|+++++..
T Consensus         3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~   37 (393)
T PRK11728          3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKES   37 (393)
T ss_pred             ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence            3699999999999999999998  99999999864

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.92  E-value=0.0019  Score=61.34  Aligned_cols=33  Identities=36%  Similarity=0.490  Sum_probs=30.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      +|+|||+|..|+++|..|++.|.+|+++++++.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCcEEEEecccc
Confidence            689999999999999999999999999997665

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=96.92  E-value=0.0052  Score=57.87  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=30.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~  240 (382)
                      .|+|||+|+.|+.+|..|.+.  |.+|.++++.+.+
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~   36 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI   36 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            489999999999999999986  8999999987733

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK02106 choline dehydrogenase; Validated

Probab=96.91  E-value=0.00096  Score=66.57  Aligned_cols=34  Identities=24%  Similarity=0.331  Sum_probs=31.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH-cCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~   90 (382)
                      ..+|+||||+|.+|+.+|.+|++ .|.+|+|||+.
T Consensus         4 ~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG   38 (560)
T PRK02106          4 MEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAG   38 (560)
T ss_pred             CcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCC
Confidence            45899999999999999999999 69999999974

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=96.91  E-value=0.0075  Score=57.22  Aligned_cols=33  Identities=36%  Similarity=0.497  Sum_probs=29.8

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~   33 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPP   33 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCC
Confidence            489999999999999999999999999997653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06996 hypothetical protein; Provisional

Probab=96.88  E-value=0.011  Score=56.44  Aligned_cols=94  Identities=16%  Similarity=0.194  Sum_probs=64.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC----CEEEEEEeCCCCc---------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG----SKVYIIHRRDSFR---------------------------------------  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g----~~v~~~~~~~~~~---------------------------------------  241 (382)
                      ...|+|||+|+.|+-+|..|.+.|    .+|+++++.+...                                       
T Consensus        11 ~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~~~~~~~~r~~~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~   90 (398)
T PRK06996         11 DFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREPAASANDPRAIALSHGSRVLLETLGAWPADATPIEHIHVSQR   90 (398)
T ss_pred             CCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCCCcCCCCceEEEecHHHHHHHHhCCCchhcCCcccEEEEecC
Confidence            457999999999999999999886    4799998864210                                       


Q ss_pred             ----------------c-----h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          242 ----------------A-----S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       242 ----------------~-----~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                                      .     .    ...+.+.+.+.+++++.++++.+++.+.++     +++.....+.+.++.+|+
T Consensus        91 ~~~g~~~~~~~~~~~~~~g~~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~-----v~v~~~~~~g~~~i~a~l  165 (398)
T PRK06996         91 GHFGRTLIDRDDHDVPALGYVVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDADG-----VTLALGTPQGARTLRARI  165 (398)
T ss_pred             CCCceEEecccccCCCcCEEEEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCCe-----EEEEECCCCcceEEeeeE
Confidence                            0     0    011112344567888888888888776654     444431111125799999


Q ss_pred             EEEeeCC
Q 016820          297 LFFAIGH  303 (382)
Q Consensus       297 vi~~~G~  303 (382)
                      +|-|.|.
T Consensus       166 vIgADG~  172 (398)
T PRK06996        166 AVQAEGG  172 (398)
T ss_pred             EEECCCC
Confidence            9999995

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=96.88  E-value=0.01  Score=56.04  Aligned_cols=61  Identities=20%  Similarity=0.296  Sum_probs=46.0

Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccc
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQL  314 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~  314 (382)
                      +..|+++++++.|++|+..++|.  ..|.+.+..+++...+.+++|++..|...-.-+-+.++
T Consensus       193 ~~~~~~~~~~~eV~~i~r~~dg~--W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi  253 (488)
T PF06039_consen  193 KQKGFELHLNHEVTDIKRNGDGR--WEVKVKDLKTGEKREVRAKFVFVGAGGGALPLLQKSGI  253 (488)
T ss_pred             hCCCcEEEecCEeCeeEECCCCC--EEEEEEecCCCCeEEEECCEEEECCchHhHHHHHHcCC
Confidence            34599999999999999998874  33666655567778999999999998876333323455

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=96.85  E-value=0.0095  Score=56.27  Aligned_cols=89  Identities=16%  Similarity=0.190  Sum_probs=60.9

Q ss_pred             cEEEEcCCchHHHHHHHH--hhcCCEEEEEEeCCCC--cc----------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFL--TKYGSKVYIIHRRDSF--RA----------------------------------------  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l--~~~g~~v~~~~~~~~~--~~----------------------------------------  242 (382)
                      .|+|||+|+.|..+|..|  .+.|.+|.++++.+..  ..                                        
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~~~~~~~tW~~~~~~~~~~~~~v~~~w~~~~v~~~~~~~~~~~~~   80 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKPPWPNDRTWCFWEKDLGPLDSLVSHRWSGWRVYFPDGSRILIDYP   80 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccccccCCcccccccccccchHHHHheecCceEEEeCCCceEEcccc
Confidence            489999999999999999  7778999999876543  00                                        


Q ss_pred             ---------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          243 ---------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       243 ---------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                               .+.+. +.+...++ ++.+..|.+|+..+++     +.+..   .++..+.++.|+.|.|..+
T Consensus        81 Y~~i~~~~f~~~l~-~~~~~~~~-~~~~~~V~~i~~~~~~-----~~v~~---~~g~~i~a~~VvDa~g~~~  142 (374)
T PF05834_consen   81 YCMIDRADFYEFLL-ERAAAGGV-IRLNARVTSIEETGDG-----VLVVL---ADGRTIRARVVVDARGPSS  142 (374)
T ss_pred             eEEEEHHHHHHHHH-HHhhhCCe-EEEccEEEEEEecCce-----EEEEE---CCCCEEEeeEEEECCCccc
Confidence                     01111 22233444 5567889999888863     22222   2235799999999998654

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=96.83  E-value=0.01  Score=56.33  Aligned_cols=31  Identities=35%  Similarity=0.576  Sum_probs=29.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      +|+|||+|+.|+-+|..|++.|.+|+++++.
T Consensus         2 DVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         2 DVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            5899999999999999999999999999987

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>TIGR02028 ChlP geranylgeranyl reductase

Probab=96.83  E-value=0.012  Score=56.08  Aligned_cols=33  Identities=27%  Similarity=0.588  Sum_probs=30.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      +|+|||+|+.|.-+|..|++.|.+|.++++...
T Consensus         2 ~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~   34 (398)
T TIGR02028         2 RVAVVGGGPAGASAAETLASAGIQTFLLERKPD   34 (398)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCcEEEEecCCC
Confidence            699999999999999999999999999987654

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=96.80  E-value=0.009  Score=56.92  Aligned_cols=89  Identities=18%  Similarity=0.248  Sum_probs=55.3

Q ss_pred             chHHHHHHHHhhcCCEE------EEEEeCC--CCc-chHHHHHHhccCCCcEEEcCceeEEEEecC--CceeeeeEEEEe
Q 016820          215 DSAMEEANFLTKYGSKV------YIIHRRD--SFR-ASKIMQNRALTNPKIDVIWNSVVLEAYGEG--DKKVLGGLKVKN  283 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v------~~~~~~~--~~~-~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~  283 (382)
                      .+++|+-.+|.+.-+++      .-+.+..  .+. ....+ .+.|++.||+++++++|++|+-+.  +.+.+..+++..
T Consensus       173 hSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl-~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~  251 (500)
T PF06100_consen  173 HSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPL-IRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQ  251 (500)
T ss_pred             hhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHH-HHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEc
Confidence            47899999988763222      1111111  111 12333 467889999999999999988753  334566666653


Q ss_pred             ccCCceEEEe---cCeEEEeeCCCCC
Q 016820          284 LVTGQVSDLK---VSGLFFAIGHEPA  306 (382)
Q Consensus       284 ~~~~~~~~~~---~D~vi~~~G~~p~  306 (382)
                        .+....+.   -|.|++..|..-.
T Consensus       252 --~g~~~~i~l~~~DlV~vT~GS~t~  275 (500)
T PF06100_consen  252 --DGKEETIDLGPDDLVFVTNGSMTE  275 (500)
T ss_pred             --CCCeeEEEeCCCCEEEEECCcccc
Confidence              23334443   5888888887653

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=96.80  E-value=0.0023  Score=63.95  Aligned_cols=85  Identities=22%  Similarity=0.266  Sum_probs=58.6

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------c----hHHHHHHhccCCCcEEEcCcee-EE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------A----SKIMQNRALTNPKIDVIWNSVV-LE  266 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------~----~~~~~~~~l~~~gv~~~~~~~v-~~  266 (382)
                      ..+++|+|||+|+.|+..|..|.+.|.+|+++++.+.+.           .    ..... +.+.+.|++++.+..+ .+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l-~~~~~~Gv~~~~~~~~~~~  213 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEI-QRILDLGVEVRLGVRVGED  213 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHH-HHHHHCCCEEEeCCEECCc
Confidence            457899999999999999999999999999998765431           1    11111 2355678888877544 21


Q ss_pred             EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      +..+.                  ....+|.+++++|..+.
T Consensus       214 ~~~~~------------------~~~~~D~Vi~AtG~~~~  235 (564)
T PRK12771        214 ITLEQ------------------LEGEFDAVFVAIGAQLG  235 (564)
T ss_pred             CCHHH------------------HHhhCCEEEEeeCCCCC
Confidence            11110                  11248999999998753

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=96.77  E-value=0.017  Score=56.84  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=30.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .-.|+|||+|..|+-.|..+++.|.+|.++++.+.
T Consensus        61 ~~DVvVVG~G~AGl~AAi~Aa~~Ga~VivlEK~~~   95 (506)
T PRK06481         61 KYDIVIVGAGGAGMSAAIEAKDAGMNPVILEKMPV   95 (506)
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            34799999999999999999999999999887653

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=96.77  E-value=0.0064  Score=53.65  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=37.9

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~  176 (382)
                      ....+..|+.+.+.+.|+.|.+.+|.+++.-.+          -.||.||-|+|.....
T Consensus       149 E~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~~----------~~~DVivNCtGL~a~~  197 (342)
T KOG3923|consen  149 EGPKYLPYLKKRLTENGVEFVQRRVESLEEVAR----------PEYDVIVNCTGLGAGK  197 (342)
T ss_pred             cchhhhHHHHHHHHhcCcEEEEeeeccHHHhcc----------CCCcEEEECCcccccc
Confidence            456788888888889999998888877763221          4689999999987543

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=96.77  E-value=0.019  Score=55.51  Aligned_cols=50  Identities=20%  Similarity=0.149  Sum_probs=35.5

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.|++++.++.++++..+++|+ +.++.+.+ ..+....+.++.||+|+|.-
T Consensus       142 ~~gv~i~~~~~v~~l~~~~~g~-v~Gv~~~~-~~g~~~~~~a~~VVlAtGg~  191 (439)
T TIGR01813       142 KEGIDTRLNSKVEDLIQDDQGT-VVGVVVKG-KGKGIYIKAAKAVVLATGGF  191 (439)
T ss_pred             HcCCEEEeCCEeeEeEECCCCc-EEEEEEEe-CCCeEEEEecceEEEecCCC
Confidence            4678899999999998765443 55676664 22323457899999999843

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=96.77  E-value=0.014  Score=55.96  Aligned_cols=54  Identities=19%  Similarity=0.302  Sum_probs=40.4

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      +++.|++++.+++++++..+++  .+.++.+.+..+++...+.++.||+|||--..
T Consensus       151 ~~~~gv~i~~~~~~~~Li~e~g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~~  204 (417)
T PF00890_consen  151 AEEAGVDIRFNTRVTDLITEDG--RVTGVVAENPADGEFVRIKAKAVILATGGFGG  204 (417)
T ss_dssp             HHHTTEEEEESEEEEEEEEETT--EEEEEEEEETTTCEEEEEEESEEEE----BGG
T ss_pred             HhhcCeeeeccceeeeEEEeCC--ceeEEEEEECCCCeEEEEeeeEEEeccCcccc
Confidence            4456799999999999998754  48889998655676678999999999988765

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.70  E-value=0.0038  Score=60.71  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +|+|||.|.+|+++|..|.+.|++|+++|+
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~   31 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDR   31 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECC
Confidence            589999999999999999999999999994

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=96.69  E-value=0.0024  Score=54.69  Aligned_cols=32  Identities=19%  Similarity=0.177  Sum_probs=30.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..++|+|||||..|..-+..|.+.|.+|+|++
T Consensus         8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs   39 (205)
T TIGR01470         8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIA   39 (205)
T ss_pred             CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence            34689999999999999999999999999998

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=96.67  E-value=0.017  Score=54.65  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=29.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|+|||+|.+|+-+|..|.+.|.+|+++++..
T Consensus         2 dvvIIGaGi~G~s~A~~La~~g~~V~l~e~~~   33 (380)
T TIGR01377         2 DVIVVGAGIMGCFAAYHLAKHGKKTLLLEQFD   33 (380)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            58999999999999999999999999998753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02985 squalene monooxygenase

Probab=96.66  E-value=0.025  Score=55.72  Aligned_cols=34  Identities=26%  Similarity=0.351  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus        43 ~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~   76 (514)
T PLN02985         43 ATDVIIVGAGVGGSALAYALAKDGRRVHVIERDL   76 (514)
T ss_pred             CceEEEECCCHHHHHHHHHHHHcCCeEEEEECcC
Confidence            4579999999999999999999999999999875

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=96.66  E-value=0.016  Score=54.71  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|.+|+-+|..|++.|.+|+++++..
T Consensus         4 ~dv~IIGgGi~G~s~A~~L~~~g~~V~lie~~~   36 (376)
T PRK11259          4 YDVIVIGLGSMGSAAGYYLARRGLRVLGLDRFM   36 (376)
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            369999999999999999999999999998753

>PLN02697 lycopene epsilon cyclase

Probab=96.66  E-value=0.014  Score=57.46  Aligned_cols=91  Identities=22%  Similarity=0.142  Sum_probs=61.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      -.|+|||+|+.|+.+|..+.+.|.+|.++.+...+..                                           
T Consensus       109 ~DVvIVGaGPAGLalA~~Lak~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~~Yg~  188 (529)
T PLN02697        109 LDLVVIGCGPAGLALAAESAKLGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGRAYGR  188 (529)
T ss_pred             ccEEEECcCHHHHHHHHHHHhCCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccCcccE
Confidence            4799999999999999999999999999976432200                                           


Q ss_pred             -h-----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          243 -S-----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       243 -~-----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                       .     +.+. +.+.+.|+++ .+..+.++..++++  +. +...    .++.++.++.||.|+|..+
T Consensus       189 V~R~~L~~~Ll-~~a~~~GV~~-~~~~V~~I~~~~~~--~~-vv~~----~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        189 VSRTLLHEELL-RRCVESGVSY-LSSKVDRITEASDG--LR-LVAC----EDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             EcHHHHHHHHH-HHHHhcCCEE-EeeEEEEEEEcCCc--EE-EEEE----cCCcEEECCEEEECCCcCh
Confidence             0     1111 1123457887 46788888776553  11 1111    1225799999999999865

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=96.65  E-value=0.0039  Score=64.10  Aligned_cols=87  Identities=21%  Similarity=0.297  Sum_probs=63.7

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----------hHHHH---HHhccCCCcEEEcCceeEEE
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----------SKIMQ---NRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----------~~~~~---~~~l~~~gv~~~~~~~v~~i  267 (382)
                      ...+++|+|||+|+.|+..|..|.+.|+.|+++.|.++...           .+...   -.++.++||+++.++.|-+-
T Consensus      1782 ~rtg~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ygipnmkldk~vv~rrv~ll~~egi~f~tn~eigk~ 1861 (2142)
T KOG0399|consen 1782 FRTGKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMYGIPNMKLDKFVVQRRVDLLEQEGIRFVTNTEIGKH 1861 (2142)
T ss_pred             cccCcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeeecCCccchhHHHHHHHHHHHHhhCceEEeecccccc
Confidence            34579999999999999999999999999999999998721           11121   14677899999988765221


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                                 +.+.      +..-+.|.|++|+|.+-
T Consensus      1862 -----------vs~d------~l~~~~daiv~a~gst~ 1882 (2142)
T KOG0399|consen 1862 -----------VSLD------ELKKENDAIVLATGSTT 1882 (2142)
T ss_pred             -----------ccHH------HHhhccCeEEEEeCCCC
Confidence                       1111      12345689999999874

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=96.63  E-value=0.0073  Score=56.89  Aligned_cols=69  Identities=28%  Similarity=0.375  Sum_probs=56.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch------------------HHHHHHhccCCCcEEEcCceeEE
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------------------KIMQNRALTNPKIDVIWNSVVLE  266 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------------------~~~~~~~l~~~gv~~~~~~~v~~  266 (382)
                      .++++|||||..|++.|..|++.|.+|+++...+.+...                  .....+.....+|++++.+.|++
T Consensus       124 ~~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~k~FP~~dcs~C~LaP~m~~v~~hp~i~l~TyaeV~e  203 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLNKTFPTNDCSICILAPKMVEVSNHPNIELITYAEVEE  203 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhhccCCCcccchhhccchhhhhccCCceeeeeeeeeee
Confidence            589999999999999999999999999999999887321                  11223556678999999999999


Q ss_pred             EEecCCc
Q 016820          267 AYGEGDK  273 (382)
Q Consensus       267 i~~~~~g  273 (382)
                      +...-++
T Consensus       204 v~G~vGn  210 (622)
T COG1148         204 VSGSVGN  210 (622)
T ss_pred             ecccccc
Confidence            8776543

>TIGR00275 flavoprotein, HI0933 family

Probab=96.63  E-value=0.011  Score=56.40  Aligned_cols=46  Identities=17%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +++.|++++.++.+.++..++++     +.+..  .+  ..+.+|.||+|+|...
T Consensus       115 l~~~gv~i~~~~~V~~i~~~~~~-----~~v~~--~~--~~i~ad~VIlAtG~~s  160 (400)
T TIGR00275       115 LKELGVEILTNSKVKSIKKDDNG-----FGVET--SG--GEYEADKVILATGGLS  160 (400)
T ss_pred             HHHCCCEEEeCCEEEEEEecCCe-----EEEEE--CC--cEEEcCEEEECCCCcc
Confidence            44568889999999999776542     33333  12  3689999999999754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=96.62  E-value=0.01  Score=55.74  Aligned_cols=95  Identities=18%  Similarity=0.291  Sum_probs=63.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-C-------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-F-------------------------------------------  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-~-------------------------------------------  240 (382)
                      .-.|+|||+|..|+|.|...++.|.+.++++.+-. +                                           
T Consensus        28 ~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ld~Ig~msCNPsfGGigKg~LmrEVDALdGl~~rvcD~s~vq~k~LN  107 (679)
T KOG2311|consen   28 TYDVVVIGGGHAGCEAAAAAARLGARTLLLTHNLDTIGEMSCNPSFGGIGKGHLMREVDALDGLCSRVCDQSGVQYKVLN  107 (679)
T ss_pred             cccEEEECCCccchHHHHHHHhcCCceEEeecccccccccccCcccCCcccceeeeeehhhcchHhhhhhhhhhhHHHhh
Confidence            34799999999999999999999988877765432 2                                           


Q ss_pred             -----------------cchHHHHHHhccCCCcEEEcCceeEEEEecC--CceeeeeEEEEeccCCceEEEecCeEEEee
Q 016820          241 -----------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEG--DKKVLGGLKVKNLVTGQVSDLKVSGLFFAI  301 (382)
Q Consensus       241 -----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~  301 (382)
                                       .+.+.+++++...+++++..+.-..=+..++  +-+.+++|.+.+   +  +.+.++.||+.|
T Consensus       108 rs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~~~~~~gV~l~d---g--t~v~a~~VilTT  182 (679)
T KOG2311|consen  108 RSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDGHCVVSGVVLVD---G--TVVYAESVILTT  182 (679)
T ss_pred             ccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCCceEEEEEEEec---C--cEeccceEEEee
Confidence                             0123444444555677776554333333332  224566777765   4  678999999998


Q ss_pred             CCC
Q 016820          302 GHE  304 (382)
Q Consensus       302 G~~  304 (382)
                      |.-
T Consensus       183 GTF  185 (679)
T KOG2311|consen  183 GTF  185 (679)
T ss_pred             ccc
Confidence            864

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.56  E-value=0.018  Score=58.69  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++..
T Consensus       261 ~dVvIIGaGIaG~s~A~~La~~G~~V~VlE~~~  293 (662)
T PRK01747        261 RDAAIIGGGIAGAALALALARRGWQVTLYEADE  293 (662)
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            589999999999999999999999999999864

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=96.50  E-value=0.0078  Score=62.37  Aligned_cols=36  Identities=19%  Similarity=0.244  Sum_probs=33.1

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+++|+|||+|+.|+.+|.+|.+.|++|++++..+
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~  416 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLK  416 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcccc
Confidence            458999999999999999999999999999999753

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=96.49  E-value=0.027  Score=45.99  Aligned_cols=30  Identities=23%  Similarity=0.377  Sum_probs=24.5

Q ss_pred             EEEcCCchHHHHHHHHhhc-----CCEEEEEEeCC
Q 016820          209 AVIGGGDSAMEEANFLTKY-----GSKVYIIHRRD  238 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~-----g~~v~~~~~~~  238 (382)
                      +|||+|++|+-++..|.+.     ..+|+++++.+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            5899999999999998876     35788888744

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.46  E-value=0.034  Score=55.88  Aligned_cols=50  Identities=18%  Similarity=0.221  Sum_probs=37.3

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      .||+++.++.+.++..+++| .+.+|.+.+..++....+.++.||+|||--
T Consensus       146 ~gV~i~~~t~v~~Li~dd~g-rV~GV~~~~~~~g~~~~i~AkaVVLATGG~  195 (603)
T TIGR01811       146 GLVEKYEGWEMLDIIVVDGN-RARGIIARNLVTGEIETHSADAVILATGGY  195 (603)
T ss_pred             CCcEEEeCcEEEEEEEcCCC-EEEEEEEEECCCCcEEEEEcCEEEECCCCC
Confidence            47999999999998775544 377777765333544678999999999874

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=96.42  E-value=0.0085  Score=57.42  Aligned_cols=92  Identities=18%  Similarity=0.304  Sum_probs=62.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC---------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF---------------------------------------------  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~---------------------------------------------  240 (382)
                      -.|+|||+|..|+|.|...++.|.++.+++.+...                                             
T Consensus         5 ~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~~dtig~msCNPaIGG~~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~   84 (621)
T COG0445           5 YDVIVIGGGHAGVEAALAAARMGAKTLLLTLNLDTIGEMSCNPAIGGPGKGHLVREIDALGGLMGKAADKAGIQFRMLNS   84 (621)
T ss_pred             CceEEECCCccchHHHHhhhccCCeEEEEEcCCCceeecccccccCCcccceeEEeehhccchHHHhhhhcCCchhhccC
Confidence            47999999999999999999999998887655432                                             


Q ss_pred             ----------------cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          241 ----------------RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       241 ----------------~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                      .+...+.+.+...+++.++.+ .+.++.-.++. .+.+|....   +  ..+.++.||++||.-
T Consensus        85 sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~-~v~dli~e~~~-~v~GV~t~~---G--~~~~a~aVVlTTGTF  157 (621)
T COG0445          85 SKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQG-EVEDLIVEEGQ-RVVGVVTAD---G--PEFHAKAVVLTTGTF  157 (621)
T ss_pred             CCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHh-hhHHHhhcCCC-eEEEEEeCC---C--CeeecCEEEEeeccc
Confidence                            001223233344577877744 45555443321 255566554   4  789999999999864

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=96.41  E-value=0.0008  Score=56.19  Aligned_cols=33  Identities=33%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~   89 (382)
                      ...||+|||+|.+||++|+.+.++  ..+|.+||.
T Consensus        75 AesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~  109 (328)
T KOG2960|consen   75 AESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIES  109 (328)
T ss_pred             hccceEEECCCccccceeeeeeccCCCceEEEEEe
Confidence            357999999999999999999866  689999994

>PLN02815 L-aspartate oxidase

Probab=96.35  E-value=0.034  Score=55.65  Aligned_cols=51  Identities=22%  Similarity=0.257  Sum_probs=36.0

Q ss_pred             CCcEEEcCceeEEEEecCCce--eeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKK--VLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~--~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      .||+++.++.+.++..+++|.  .+.++.+.+..++....+.++.||+|||--
T Consensus       169 ~~i~i~~~~~~~~Li~~~~g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATGG~  221 (594)
T PLN02815        169 PNITFFEHHFAIDLLTSQDGGSIVCHGADVLDTRTGEVVRFISKVTLLASGGA  221 (594)
T ss_pred             CCCEEEeceEhheeeeecCCCccEEEEEEEEEcCCCeEEEEEeceEEEcCCcc
Confidence            478888888888887654432  366777654334545677899999999844

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=96.33  E-value=0.0033  Score=62.20  Aligned_cols=33  Identities=27%  Similarity=0.404  Sum_probs=31.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+||||+|.+|..+|..|+..|++|+|+|+
T Consensus         6 ~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEa   38 (542)
T COG2303           6 MEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA   38 (542)
T ss_pred             CCCCEEEECCCchhHHHHHHhcCCCCeEEEEeC
Confidence            568999999999999999999988999999996

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.31  E-value=0.033  Score=55.23  Aligned_cols=42  Identities=29%  Similarity=0.319  Sum_probs=34.9

Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccc
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQED  376 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~  376 (382)
                      .+|+|.+|++.+.  .....|..||..|+.|++..+.++++...
T Consensus       357 ~~gLf~AGqi~Gt--~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l  398 (617)
T TIGR00136       357 IQGLFFAGQINGT--TGYEEAAAQGLMAGINAALKLQNKEPFIL  398 (617)
T ss_pred             CCCeEEccccCCc--chHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            5899999999874  23569999999999999999998775544

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.30  E-value=0.029  Score=53.17  Aligned_cols=68  Identities=19%  Similarity=0.405  Sum_probs=55.7

Q ss_pred             ccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECC---eEEEcCEEEEccCCC-Cc
Q 016820          108 ENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDS---KSVLADTVIVATGAV-AK  175 (382)
Q Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~---~~~~~d~lvlA~G~~-~~  175 (382)
                      ..+|..|..+.+..+.+.+.+.++++|.+++.+ +|.++..+++.+. +.+++   ..+.+|.+|+|+|++ +.
T Consensus       251 ~E~ptlPPSv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       251 CELPTMPPSLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             EeCCCCCCCCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence            345667788889999999999999999999998 8999988777655 44344   379999999999998 54

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=96.30  E-value=0.049  Score=55.12  Aligned_cols=36  Identities=17%  Similarity=0.342  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|+.|+-+|..|.+. |.+|+++++.+..
T Consensus        32 ~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         32 EVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            45799999999999999999995 9999999987644

>TIGR01810 betA choline dehydrogenase

Probab=96.30  E-value=0.0033  Score=62.38  Aligned_cols=31  Identities=23%  Similarity=0.195  Sum_probs=29.1

Q ss_pred             cEEEECCcHHHHHHHHHHHHcC-CCeEEEecc
Q 016820           60 KVCIIGSGPAAHTAAIYAARAE-LKPILFEGW   90 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~   90 (382)
                      |++|||||.+|+.+|.+|++.+ ++|+|+|+.
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG   32 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAG   32 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecC
Confidence            7999999999999999999998 799999963

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.26  E-value=0.028  Score=50.32  Aligned_cols=47  Identities=19%  Similarity=0.356  Sum_probs=36.2

Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +++..++++.+|.+.++.  +.+|+..+ ..++...+..|.|++|+|.-.
T Consensus       160 ~ki~~nskvv~il~n~gk--VsgVeymd-~sgek~~~~~~~VVlatGGf~  206 (477)
T KOG2404|consen  160 VKILLNSKVVDILRNNGK--VSGVEYMD-ASGEKSKIIGDAVVLATGGFG  206 (477)
T ss_pred             HhhhhcceeeeeecCCCe--EEEEEEEc-CCCCccceecCceEEecCCcC
Confidence            778889999999966653  77788775 345557788999999997654

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=96.25  E-value=0.043  Score=52.14  Aligned_cols=34  Identities=29%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.
T Consensus         3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            5799999999999999999999999999998874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=96.23  E-value=0.0086  Score=41.24  Aligned_cols=32  Identities=31%  Similarity=0.585  Sum_probs=29.0

Q ss_pred             EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      |||+|.+|+..|..|.+.+.+|+++++.+.+.
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccC
Confidence            89999999999999999999999999988764

...

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=96.23  E-value=0.045  Score=52.98  Aligned_cols=34  Identities=35%  Similarity=0.517  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .-+|+|||+|+.|.-+|..|++.|.+|.++++..
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            3579999999999999999999999999998775

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=96.17  E-value=0.064  Score=53.68  Aligned_cols=51  Identities=14%  Similarity=0.206  Sum_probs=35.9

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +.||+++.++.+.++..++ | .+.++...+..++....+.++.||+|+|...
T Consensus       141 ~~gv~i~~~~~v~~L~~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~~  191 (566)
T TIGR01812       141 KLGVSFFNEYFALDLIHDD-G-RVRGVVAYDLKTGEIVFFRAKAVVLATGGYG  191 (566)
T ss_pred             HcCCEEEeccEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCeEEECCCccc
Confidence            3578888899999887654 3 3556665443334445789999999999653

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.16  E-value=0.064  Score=54.34  Aligned_cols=50  Identities=18%  Similarity=0.275  Sum_probs=37.0

Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                      ++.||+++.++.+.++..++ | .+.+|.+.+..++....+.++.||+|||.
T Consensus       181 ~~~gV~i~~~t~v~~Li~d~-g-~V~GV~~~~~~~g~~~~i~AkaVVLATGG  230 (640)
T PRK07573        181 AAGTVKMYTRTEMLDLVVVD-G-RARGIVARNLVTGEIERHTADAVVLATGG  230 (640)
T ss_pred             HhcCCEEEeceEEEEEEEeC-C-EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence            35678999999999887654 3 37777776533354457899999999987

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=96.08  E-value=0.074  Score=51.87  Aligned_cols=33  Identities=27%  Similarity=0.414  Sum_probs=30.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      -.|+|||+|..|+-.|..+++.|.+|+++++.+
T Consensus         5 ~DVvVVG~G~aGl~AA~~aa~~G~~V~vlEk~~   37 (466)
T PRK08274          5 VDVLVIGGGNAALCAALAAREAGASVLLLEAAP   37 (466)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            479999999999999999999999999998754

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=96.07  E-value=0.014  Score=49.80  Aligned_cols=33  Identities=21%  Similarity=0.291  Sum_probs=30.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ...++|+|||||-.|...|..|.+.|.+|+|++
T Consensus         8 l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs   40 (202)
T PRK06718          8 LSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS   40 (202)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence            345799999999999999999999999999998

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=96.07  E-value=0.059  Score=52.08  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=28.6

Q ss_pred             cEEEEcCCchHHHHHHHHhh----cCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTK----YGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~----~g~~v~~~~~~  237 (382)
                      .|+|||+|+.|+-+|..|.+    .|.+|+++++.
T Consensus         2 DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~   36 (437)
T TIGR01989         2 DVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV   36 (437)
T ss_pred             cEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence            58999999999999999998    79999999983

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PLN02785 Protein HOTHEAD

Probab=96.03  E-value=0.0069  Score=60.47  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=30.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+|++|||+|.+|+.+|.+|.+ +.+|+|||+.
T Consensus        54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G   86 (587)
T PLN02785         54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERG   86 (587)
T ss_pred             ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecC
Confidence            45999999999999999999999 6999999963

>PRK06175 L-aspartate oxidase; Provisional

Probab=95.99  E-value=0.087  Score=50.80  Aligned_cols=48  Identities=13%  Similarity=0.117  Sum_probs=34.2

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.||+++.++.+.++..+++  .+.++....  .+....+.++.||+|||.-
T Consensus       141 ~~gV~i~~~t~v~~Li~~~~--~v~Gv~~~~--~g~~~~i~Ak~VILAtGG~  188 (433)
T PRK06175        141 RKNITIIENCYLVDIIENDN--TCIGAICLK--DNKQINIYSKVTILATGGI  188 (433)
T ss_pred             cCCCEEEECcEeeeeEecCC--EEEEEEEEE--CCcEEEEEcCeEEEccCcc
Confidence            45899999999999876543  255555433  2333468999999999864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.98  E-value=0.085  Score=52.91  Aligned_cols=50  Identities=18%  Similarity=0.185  Sum_probs=34.3

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      .||+++.++.+.++..++ | .+.++...+..++....+.++.||+|||...
T Consensus       151 ~gv~i~~~~~v~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG~~  200 (577)
T PRK06069        151 DNIHFYDEHFVTSLIVEN-G-VFKGVTAIDLKRGEFKVFQAKAGIIATGGAG  200 (577)
T ss_pred             CCCEEEECCEEEEEEEEC-C-EEEEEEEEEcCCCeEEEEECCcEEEcCchhc
Confidence            578888888888887554 2 2555655433334445689999999998863

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=95.92  E-value=0.11  Score=52.32  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=29.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~  238 (382)
                      -.|+|||+|..|+-.|..+.+.  |.+|.++.+..
T Consensus        12 ~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~   46 (608)
T PRK06854         12 TDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKAN   46 (608)
T ss_pred             eCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            4699999999999999999988  89999987654

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=95.92  E-value=0.1  Score=51.49  Aligned_cols=33  Identities=30%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      -.|+|||||.+|+-+|..+++.|.+|+++++.+
T Consensus         7 ~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d   39 (508)
T PRK12266          7 YDLLVIGGGINGAGIARDAAGRGLSVLLCEQDD   39 (508)
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            579999999999999999999999999999764

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=95.89  E-value=0.1  Score=52.70  Aligned_cols=33  Identities=27%  Similarity=0.382  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        72 ~DVvVIGGGi~Ga~~A~~lA~rGl~V~LvE~~d  104 (627)
T PLN02464         72 LDVLVVGGGATGAGVALDAATRGLRVGLVERED  104 (627)
T ss_pred             cCEEEECCCHHHHHHHHHHHhCCCEEEEEeccc
Confidence            579999999999999999999999999998763

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=95.88  E-value=0.064  Score=52.19  Aligned_cols=33  Identities=15%  Similarity=0.312  Sum_probs=29.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~  238 (382)
                      ..|+|||+|.+|+.+|..|++.  |.+|+++++..
T Consensus        25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            4799999999999999999987  88999998653

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>TIGR00551 nadB L-aspartate oxidase

Probab=95.86  E-value=0.1  Score=51.22  Aligned_cols=47  Identities=23%  Similarity=0.242  Sum_probs=34.0

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      .||+++.++.+.++..+++  .+.++.+.+.  +....+.++.||+|+|..
T Consensus       142 ~gi~i~~~~~v~~l~~~~g--~v~Gv~~~~~--~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       142 PNIRIIEGENALDLLIETG--RVVGVWVWNR--ETVETCHADAVVLATGGA  188 (488)
T ss_pred             CCcEEEECeEeeeeeccCC--EEEEEEEEEC--CcEEEEEcCEEEECCCcc
Confidence            5899999999999876543  2555666542  333568999999999874

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.84  E-value=0.022  Score=55.15  Aligned_cols=31  Identities=13%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .++++|+|.|.+|+++|..|++.|++|++.|
T Consensus         5 ~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d   35 (445)
T PRK04308          5 NKKILVAGLGGTGISMIAYLRKNGAEVAAYD   35 (445)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            4679999999999999999999999999999

>PRK07121 hypothetical protein; Validated

Probab=95.82  E-value=0.14  Score=50.31  Aligned_cols=34  Identities=21%  Similarity=0.315  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .-.|+|||+|..|+-.|..+++.|.+|++++...
T Consensus        20 ~~DVvVVGaG~AGl~AA~~aae~G~~VillEK~~   53 (492)
T PRK07121         20 EADVVVVGFGAAGACAAIEAAAAGARVLVLERAA   53 (492)
T ss_pred             ccCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3479999999999999999999999999987654

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=95.81  E-value=0.053  Score=49.83  Aligned_cols=36  Identities=28%  Similarity=0.318  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ...|+|||+|..|..+|..|.+.|.+|++++|.-.-
T Consensus        45 ~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERDl~E   80 (509)
T KOG1298|consen   45 AADVIIVGAGVAGSALAYALAKDGRRVHVIERDLSE   80 (509)
T ss_pred             cccEEEECCcchHHHHHHHHhhCCcEEEEEeccccc
Confidence            345999999999999999999999999999987543

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.80  E-value=0.0087  Score=55.21  Aligned_cols=30  Identities=17%  Similarity=0.267  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||.|+.|+..|.-|+++|++|+.+|
T Consensus         1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vD   30 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLAELGHEVVCVD   30 (414)
T ss_pred             CceEEECCchHHHHHHHHHHHcCCeEEEEe
Confidence            479999999999999999999999999999

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=95.80  E-value=0.12  Score=51.62  Aligned_cols=50  Identities=16%  Similarity=0.119  Sum_probs=36.2

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.||+++.++.+.++..++ | .+.++...+..++....+.++.||+|||.-
T Consensus       148 ~~gv~i~~~~~~~~Li~~~-g-~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~  197 (566)
T PRK06452        148 GLNVDFYNEWFSLDLVTDN-K-KVVGIVAMQMKTLTPFFFKTKAVVLATGGM  197 (566)
T ss_pred             hCCCEEEeCcEEEEEEEEC-C-EEEEEEEEECCCCeEEEEEeCeEEECCCcc
Confidence            3578888888888888753 3 367777765434444678899999999854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	382
1vdc_A	333	Structure Of Nadph Dependent Thioredoxin Reductase		1e-146
2whd_A	351	Barley Nadph-Dependent Thioredoxin Reductase 2 Leng		1e-141
3d8x_A	326	Crystal Structure Of Saccharomyces Cerevisiae Nadph		1e-107
3itj_A	338	Crystal Structure Of Saccharomyces Cerevisiae Thior		1e-107
4a5l_A	314	Crystal Structure Of The Thioredoxin Reductase From		7e-95
2a87_A	335	Crystal Structure Of M. Tuberculosis Thioredoxin Re		6e-73
1cl0_A	320	Crystal Structure Of Reduced Thioredoxin Reductase		9e-68
1tde_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		1e-67
1trb_A	320	Convergent Evolution Of Similar Function In Two Str		1e-66
1f6m_A	320	Crystal Structure Of A Complex Between Thioredoxin		1e-66
1tdf_A	316	Crystal Structure Of Escherichia Coli Thioredoxin R		2e-66
2q7v_A	325	Crystal Structure Of Deinococcus Radiodurans Thiore		4e-59
4gcm_A	312	Crystal Structure Of A Thioredoxine Reductase (Trxb		1e-50
3f8p_A	323	Structure Of Sulfolobus Solfataricus Trxr-B3 Length		1e-43
3f8d_A	323	Structure Of Sulfolobus Solfataricus Thioredoxin Re		2e-42
2q0k_A	311	Oxidized Thioredoxin Reductase From Helicobacter Py		1e-40
3r9u_A	315	Thioredoxin-Disulfide Reductase From Campylobacter		9e-40
1fl2_A	310	Catalytic Core Component Of The Alkylhydroperoxide		3e-27
1hyu_A	521	Crystal Structure Of Intact Ahpf Length = 521		4e-27
3cty_A	319	Crystal Structure Of T. Acidophilum Thioredoxin Red		1e-20
3lzw_A	332	Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductas		8e-11
2zbw_A	335	Crystal Structure Of Thioredoxin Reductase-Like Pro		1e-07
1nhr_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		4e-05
1f8w_A	447	Crystal Structure Of Nadh Peroxidase Mutant: R303m		4e-05
1nhs_A	447	An L40c Mutation Converts The Cysteine-Sulfenic Aci		4e-05
1nhq_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		4e-05
1joa_A	447	Nadh Peroxidase With Cysteine-Sulfenic Acid Length		4e-05
1nhp_A	447	Crystallographic Analyses Of Nadh Peroxidase Cys42a		4e-05
2bc1_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		1e-04
2bc0_A	490	Structural Analysis Of Streptococcus Pyogenes Nadh		1e-04
3ab1_A	360	Crystal Structure Of Ferredoxin Nadp+ Oxidoreductas		3e-04
4em3_A	437	Crystal Structure Of Staphylococcus Aureus Bound Wi		4e-04
1yqz_A	438	Structure Of Coenzyme A-Disulfide Reductase From St		4e-04
4eqw_A	437	Crystal Structure Of The Y361f, Y419f Mutant Of Sta		4e-04
4eqs_A	437	Crystal Structure Of The Y419f Mutant Of Staphyloco		4e-04
4eqr_A	437	Crystal Structure Of The Y361f Mutant Of Staphyloco		4e-04
4emw_A	436	Crystal Structure Of Staphylococcus Aureus Bound Wi		5e-04
4eqx_A	437	Crystal Structure Of The C43s Mutant Of Staphylococ		5e-04

>pdb|1VDC|A Chain A, Structure Of Nadph Dependent Thioredoxin Reductase Length = 333

Iteration: 1
 Score =  513 bits (1320), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 248/333 (74%), Positives = 279/333 (83%), Gaps = 4/333 (1%)
Query: 51  MDEIQTLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           M+ ++T  T++CI+GSGP            ELKP+LFEGWMANDIAPGGQLTTT+DVENF
Sbjct: 1   MNGLETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENF 60
Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVAT 170
           PGFP+GILG +L D+ R QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+A 
Sbjct: 61  PGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAI 120
Query: 171 GAVAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           GAVAK+L F GS      FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTK
Sbjct: 121 GAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK 180
Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXT 286
           YGSKVYIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+               T
Sbjct: 181 YGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT 240
Query: 287 GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK 346
           G VSDLKVSGLFFAIGHEPATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKK
Sbjct: 241 GDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK 300
Query: 347 YRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           YRQA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 301 YRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 333

>pdb|2WHD|A Chain A, Barley Nadph-Dependent Thioredoxin Reductase 2 Length = 351

Iteration: 1
 Score =  496 bits (1278), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 234/323 (72%), Positives = 274/323 (84%)
Query: 57  LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
           L+T+VCIIGSGP            ELKP+LFEGWMANDIA GGQLTTT+DVENFPGFP G
Sbjct: 29  LRTRVCIIGSGPAAHTAAIYAARAELKPVLFEGWMANDIAAGGQLTTTTDVENFPGFPTG 88
Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176
           I+G DLMD CR QS+RFGT I +ETV++VDF +RPF+V +DS +VLADTV+VATGAVA++
Sbjct: 89  IMGIDLMDNCRAQSVRFGTNILSETVTEVDFSARPFRVTSDSTTVLADTVVVATGAVARR 148
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L F GSD +WNRGISACAVCDGAAPIFR+KP+AVIGGGDSAMEE NFLTKYGS+VYIIHR
Sbjct: 149 LYFSGSDTYWNRGISACAVCDGAAPIFRNKPIAVIGGGDSAMEEGNFLTKYGSQVYIIHR 208
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
           R++FRASKIMQ RAL+NPKI V+W+S V+EAYG                TG+VSDL+VSG
Sbjct: 209 RNTFRASKIMQARALSNPKIQVVWDSEVVEAYGGAGGGPLAGVKVKNLVTGEVSDLQVSG 268
Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           LFFAIGHEPATKF++GQL+LH+DGY+ TKPG+THTSV GVFAAGDVQDKKYRQA+TAAG+
Sbjct: 269 LFFAIGHEPATKFLNGQLELHADGYVATKPGSTHTSVEGVFAAGDVQDKKYRQAITAAGS 328
Query: 357 GCMAALEAEHYLQEIGSQEDKSE 379
           GCMAAL+AEHYLQE+G+Q  KS+
Sbjct: 329 GCMAALDAEHYLQEVGAQVGKSD 351

>pdb|3D8X|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Nadph Dependent Thioredoxin Reductase 1 Length = 326

Iteration: 1
 Score =  386 bits (991), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/316 (59%), Positives = 230/316 (72%), Gaps = 6/316 (1%)
Query: 60  KVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           KV IIGSGP            E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G+ G
Sbjct: 12  KVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTG 71
Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAK 175
            +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ V  D +I+ATGA AK
Sbjct: 72  SELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAK 131
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
           ++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+++ 
Sbjct: 132 RMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVFMLV 191
Query: 236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVS 295
           R+D  RAS IMQ RA  N KI++++N+V LEA G+                 + +DL VS
Sbjct: 192 RKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDLPVS 249
Query: 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
           GLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T+AG
Sbjct: 250 GLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAG 309
Query: 356 TGCMAALEAEHYLQEI 371
           +GCMAAL+AE YL  +
Sbjct: 310 SGCMAALDAEKYLTSL 325

>pdb|3ITJ|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Thioredoxin Reductase 1 (trr1) Length = 338

Iteration: 1
 Score =  385 bits (990), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 187/319 (58%), Positives = 231/319 (72%), Gaps = 6/319 (1%)
Query: 57  LKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
           +  KV IIGSGP            E+KPIL+EG MAN IA GGQLTTT+++ENFPGFP G
Sbjct: 21  VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDG 80
Query: 117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGA 172
           + G +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ V  D +I+ATGA
Sbjct: 81  LTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGA 140
Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
            AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EEA FLTKYGSKV+
Sbjct: 141 SAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEEAQFLTKYGSKVF 200
Query: 233 IIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           ++ R+D  RAS IMQ RA  N KI++++N+V LEA G+                 + +DL
Sbjct: 201 MLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKLLNALRIKNTKK--NEETDL 258
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
            VSGLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAGDVQD KYRQA+T
Sbjct: 259 PVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAIT 318
Query: 353 AAGTGCMAALEAEHYLQEI 371
           +AG+GCMAAL+AE YL  +
Sbjct: 319 SAGSGCMAALDAEKYLTSL 337

>pdb|4A5L|A Chain A, Crystal Structure Of The Thioredoxin Reductase From Entamoeba Histolytica Length = 314

Iteration: 1
 Score =  343 bits (881), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 169/310 (54%), Positives = 215/310 (69%), Gaps = 5/310 (1%)
Query: 61  VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V IIGSGP             LKP+++EG+MA  +A GGQLTTT+ +ENFPGFP GI G 
Sbjct: 7   VVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGN 66
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQF 179
           +LM   R QS ++GT I TET+  VDF ++PFK+FT+  K VL  +VI+ATGA AK++  
Sbjct: 67  ELMMNMRTQSEKYGTTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHV 126
Query: 180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239
           PG D +W  G+SACA+CDGA PIFR+K L V+GGGD+AMEEA  LTKYGSKV I+HRRD+
Sbjct: 127 PGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA 186
Query: 240 FRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFF 299
           FRASK MQ R L +PKI+VIWNS ++E  G+               +G+   + V+GLF+
Sbjct: 187 FRASKTMQERVLNHPKIEVIWNSELVELEGD--GDLLNGAKIHNLVSGEYKVVPVAGLFY 244
Query: 300 AIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCM 359
           AIGH P +KF+ GQ+    DGYI+T+     TSV GVFA GDV D+ YRQA+ AAG+GCM
Sbjct: 245 AIGHSPNSKFLGGQVKTADDGYILTE--GPKTSVDGVFACGDVCDRVYRQAIVAAGSGCM 302
Query: 360 AALEAEHYLQ 369
           AAL  E +LQ
Sbjct: 303 AALSCEKWLQ 312

>pdb|2A87|A Chain A, Crystal Structure Of M. Tuberculosis Thioredoxin Reductase Length = 335

Iteration: 1
 Score =  271 bits (692), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 147/312 (47%), Positives = 189/312 (60%), Gaps = 13/312 (4%)
Query: 61  VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V +IGSGP            +L P++FEG      + GG L TT+DVEN+PGF  GI G 
Sbjct: 17  VIVIGSGPAGYTAALYAARAQLAPLVFEG-----TSFGGALMTTTDVENYPGFRNGITGP 71
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK--VFTDSKSVLADTVIVATGAVAKKLQ 178
           +LMD  R Q+LRFG  +  E V  V     P K  V  D ++  A  VI+A GA A+ LQ
Sbjct: 72  ELMDEMREQALRFGADLRMEDVESVSLHG-PLKSVVTADGQTHRARAVILAMGAAARYLQ 130
Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            PG      RG+S+CA CDG    FRD+ +AVIGGGDSAMEEA FLT++   V ++HRRD
Sbjct: 131 VPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD 188
Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLF 298
            FRASKIM +RA  N KI  + N  V+   G+               TG  + L V+G+F
Sbjct: 189 EFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTTVTGLRVRDTN---TGAETTLPVTGVF 245
Query: 299 FAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC 358
            AIGHEP +  V   +D+  DGY++ +  TT TS+PGVFAAGD+ D+ YRQAVTAAG+GC
Sbjct: 246 VAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGC 305
Query: 359 MAALEAEHYLQE 370
            AA++AE +L E
Sbjct: 306 AAAIDAERWLAE 317

>pdb|1CL0|A Chain A, Crystal Structure Of Reduced Thioredoxin Reductase From Escherichia Coli Length = 320

Iteration: 1
 Score =  253 bits (647), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 138/320 (43%), Positives = 193/320 (60%), Gaps = 16/320 (5%)
Query: 56  TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           RRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
            V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
           QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313

>pdb|1TDE|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score =  253 bits (647), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/320 (43%), Positives = 193/320 (60%), Gaps = 16/320 (5%)
Query: 56  TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SACA CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           RRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
            V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
           QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313

>pdb|1TRB|A Chain A, Convergent Evolution Of Similar Function In Two Structurally Divergent Enzymes Length = 320

Iteration: 1
 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56  TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SACA  DG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           RRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
            V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
           QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313

>pdb|1F6M|A Chain A, Crystal Structure Of A Complex Between Thioredoxin Reductase, Thioredoxin, And The Nadp+ Analog, Aadp+ Length = 320

Iteration: 1
 Score =  250 bits (638), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56  TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SA A CDG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSASATCDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           RRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
            V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
           QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313

>pdb|1TDF|A Chain A, Crystal Structure Of Escherichia Coli Thioredoxin Reductase Refined At 2 Angstrom Resolution: Implications For A Large Conformational Change During Catalysis Length = 316

Iteration: 1
 Score =  249 bits (637), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 137/320 (42%), Positives = 192/320 (60%), Gaps = 16/320 (5%)
Query: 56  TLKTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGP             L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57
Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117
Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SACA  DG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175
Query: 236 RRDSFRASKIMQNRAL---TNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDL 292
           RRD FRA KI+  R +    N  I +  N  + E  G+               +  +  L
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESL 234
Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYR 348
            V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YR
Sbjct: 235 DVAGLFVAIGHSPNTAIFEGQLEL-ENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYR 293
Query: 349 QAVTAAGTGCMAALEAEHYL 368
           QA+T+AGTGCMAAL+AE YL
Sbjct: 294 QAITSAGTGCMAALDAERYL 313

>pdb|2Q7V|A Chain A, Crystal Structure Of Deinococcus Radiodurans Thioredoxin Reductase Length = 325

Iteration: 1
 Score =  224 bits (572), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 125/312 (40%), Positives = 170/312 (54%), Gaps = 15/312 (4%)
Query: 61  VCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V IIG GP            +L  ++ E  M     PGGQ+  + +VENFPGFP+ I G 
Sbjct: 11  VVIIGGGPAGLTAAIYTGRAQLSTLILEKGM-----PGGQIAWSEEVENFPGFPEPIAGM 65
Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSR----PFKVFTDSKSVLADTVIVATGAVAKK 176
           +L  R   Q+ +FG ++  + V  V   +     PF V   +    A  VI+ATGA  +K
Sbjct: 66  ELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRK 125
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L  PG D FW +G+S CA CDG    ++ K + VIGGGD+A+EE  FLTK+  +V +IHR
Sbjct: 126 LGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHR 183
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
           RD+ RA+K+ Q RA  NPK+  IW++ V E  G                TG+VS+L   G
Sbjct: 184 RDTLRANKVAQARAFANPKMKFIWDTAVEEIQG---ADSVSGVKLRNLKTGEVSELATDG 240
Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           +F  IGH P T FV   + L  DGY+  +    +T++P +FAAGDV D  YRQ  T+ G 
Sbjct: 241 VFIFIGHVPNTAFVKDTVSLRDDGYVDVRD-EIYTNIPMLFAAGDVSDYIYRQLATSVGA 299
Query: 357 GCMAALEAEHYL 368
           G  AA+  E  L
Sbjct: 300 GTRAAMMTERQL 311

>pdb|4GCM|A Chain A, Crystal Structure Of A Thioredoxine Reductase (Trxb) From Staphylococcus Aureus Subsp. Aureus Mu50 At 1.80 A Resolution Length = 312

Iteration: 1
 Score =  197 bits (500), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 123/280 (43%), Positives = 158/280 (56%), Gaps = 10/280 (3%)
Query: 97  PGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT 156
           PGGQ   T +VENFPGF + I G DL  +    + +FG       +  V+ K     +  
Sbjct: 40  PGGQXANTEEVENFPGF-EXITGPDLSTKXFEHAKKFGAVYQYGDIKSVEDKGEYKVINF 98
Query: 157 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS 216
            +K + A  VI+ATGA  KK+  PG      RG+S CAVCDGA   F++K L VIGGGDS
Sbjct: 99  GNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDS 156
Query: 217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXX 276
           A+EE  FLTK+  KV I+HRRD  RA +I+Q+RA  N KID IW S  L++  E      
Sbjct: 157 AVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIW-SHTLKSINE-KDGKV 214
Query: 277 XXXXXXXXXTGQVSDLKVSGLFFAIGHEPATK-FVDGQLDLHSD-GYIITKPGTTHTSVP 334
                     G     +  G+F  IG +P T  F D  L + +D GYI+TK   T TSVP
Sbjct: 215 GSVTLTSTKDGSEETHEADGVFIYIGXKPLTAPFKD--LGITNDVGYIVTKDDXT-TSVP 271
Query: 335 GVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ 374
           G+FAAGDV+DK  RQ VTA G G +AA  A  Y++ +  Q
Sbjct: 272 GIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQ 311

>pdb|3F8P|A Chain A, Structure Of Sulfolobus Solfataricus Trxr-B3 Length = 323

Iteration: 1
 Score =  173 bits (439), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/317 (35%), Positives = 160/317 (50%), Gaps = 17/317 (5%)
Query: 58  KTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
           K  V I+G GP             LK ++          PGGQLT    V+++ G  + I
Sbjct: 15  KFDVIIVGLGPAAYGAALYSARYMLKTLVIGE------TPGGQLTEAGIVDDYLGLIE-I 67
Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKK 176
              D++        ++   +  + V K++ +   F V T  K    AD+VI+  G   +K
Sbjct: 68  QASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK 127
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L  PG   F  RGIS C+VCD  AP+F+++ +AVIGGGDSA+E A  L+ Y +KVY+IHR
Sbjct: 128 LGVPGEQEFAGRGISYCSVCD--APLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
           RD+F+A  I        P ++ + NSVV E  G+               TG++ +L V+G
Sbjct: 186 RDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVNG 242
Query: 297 LFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTA 353
           +F  IG +P T F     ++  ++GYI        TSVPGVFAAGD       +RQ +TA
Sbjct: 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITA 301
Query: 354 AGTGCMAALEAEHYLQE 370
              G +AA  A  Y+ E
Sbjct: 302 VAQGAVAATSAYRYVTE 318

>pdb|3F8D|A Chain A, Structure Of Sulfolobus Solfataricus Thioredoxin Reductase Mutant C147a Length = 323

Iteration: 1
 Score =  169 bits (428), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 110/317 (34%), Positives = 159/317 (50%), Gaps = 17/317 (5%)
Query: 58  KTKVCIIGSGPXXXXXXXXXXXXELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
           K  V I+G GP             LK ++          PGGQLT    V+++ G  + I
Sbjct: 15  KFDVIIVGLGPAAYGAALYSARYMLKTLVI------GETPGGQLTEAGIVDDYLGLIE-I 67
Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKK 176
              D++        ++   +  + V K++ +   F V T  K    AD+VI+  G   +K
Sbjct: 68  QASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRK 127
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L  PG   F  RGIS C+V D  AP+F+++ +AVIGGGDSA+E A  L+ Y +KVY+IHR
Sbjct: 128 LGVPGEQEFAGRGISYCSVAD--APLFKNRVVAVIGGGDSALEGAEILSSYSTKVYLIHR 185
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
           RD+F+A  I        P ++ + NSVV E  G+               TG++ +L V+G
Sbjct: 186 RDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGD---KVVKQVVVENLKTGEIKELNVNG 242
Query: 297 LFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTA 353
           +F  IG +P T F     ++  ++GYI        TSVPGVFAAGD       +RQ +TA
Sbjct: 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITA 301
Query: 354 AGTGCMAALEAEHYLQE 370
              G +AA  A  Y+ E
Sbjct: 302 VAQGAVAATSAYRYVTE 318

>pdb|2Q0K|A Chain A, Oxidized Thioredoxin Reductase From Helicobacter Pylori In Complex With Nadp+ Length = 311

Iteration: 1
 Score =  164 bits (414), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/314 (34%), Positives = 155/314 (49%), Gaps = 15/314 (4%)
Query: 63  IIGSGPXXXXXXXXXXXXELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGD 121
           IIG GP             +K  +LFE  M     PGGQ+T +S++EN+PG  + + G D
Sbjct: 6   IIGGGPAGLSAGLYATRGGVKNAVLFEKGM-----PGGQITGSSEIENYPGVKEVVSGLD 60
Query: 122 LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFP 180
            M   + Q  RFG +     V +V  K   F +   D K+  A +VI+ATG   K+    
Sbjct: 61  FMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIK 120
Query: 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
           G   +W +G+S CA CDG    +++K +AV+GGGD+A+EEA +L     KVY+IHRRD F
Sbjct: 121 GESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF 178
Query: 241 RASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFA 300
           R + I    A  N KI+ +   VV E  G+               T +  +L V G F  
Sbjct: 179 RCAPITLEHAKNNDKIEFLTPYVVEEIKGD--ASGVSSLSIKNTATNEKRELVVPGFFIF 236
Query: 301 IGHE---PATKFVDGQLDLHSDGY-IITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT 356
           +G++      K  D  +    D Y  I    +  T+V G+FAAGD++    +Q V AA  
Sbjct: 237 VGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSMKTNVQGLFAAGDIRIFAPKQVVCAASD 296
Query: 357 GCMAALEAEHYLQE 370
           G  AAL    YL+ 
Sbjct: 297 GATAALSVISYLEH 310

>pdb|3R9U|A Chain A, Thioredoxin-Disulfide Reductase From Campylobacter Jejuni. Length = 315

Iteration: 1
 Score =  160 bits (406), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 113/323 (34%), Positives = 164/323 (50%), Gaps = 27/323 (8%)
Query: 61  VCIIGSGPXXXXXXXXXXXXELKPIL-FEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
           V IIG GP             LK ++ FE        PGGQ+T++S++EN+PG  Q   G
Sbjct: 7   VAIIGGGPAGLSAGLYATRGGLKNVVXFEKGX-----PGGQITSSSEIENYPGVAQVXDG 61
Query: 120 GDLMDRCRNQSLRFGTQ---IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK 176
                    Q  RFG +   +  E + K    S   K+    K+ LA  VIV TG+  KK
Sbjct: 62  ISFXAPWSEQCXRFGLKHEXVGVEQILKNSDGSFTIKL-EGGKTELAKAVIVCTGSAPKK 120
Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
             F G D F+ +G+S CA CDG    +++K +AV+GGGD+A+EEA +L    SK+Y+IHR
Sbjct: 121 AGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHR 178
Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSG 296
           RD FRA+     +   N KI++I ++ V E YG+                G + DL V G
Sbjct: 179 RDEFRAAPSTVEKVKKNEKIELITSASVDEVYGD---KXGVAGVKVKLKDGSIRDLNVPG 235
Query: 297 LFFAIG--------HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           +F  +G         +  +KF    L    +G  ++      TSV G+FAAGD++    +
Sbjct: 236 IFTFVGLNVRNEILKQDDSKF----LCNXEEGGQVSVDLKXQTSVAGLFAAGDLRKDAPK 291
Query: 349 QAVTAAGTGCMAALEAEHYLQEI 371
           Q + AAG G +AAL A  Y++ +
Sbjct: 292 QVICAAGDGAVAALSAXAYIESL 314

>pdb|1FL2|A Chain A, Catalytic Core Component Of The Alkylhydroperoxide Reductase Ahpf From E.Coli Length = 310

Iteration: 1
 Score =  119 bits (297), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/276 (29%), Positives = 141/276 (51%), Gaps = 11/276 (3%)
Query: 98  GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF-TETVSKV---DFKSRPFK 153
           GGQ+  T D+EN+   P+   G  L    +     +   +  +++ SK+     +    +
Sbjct: 35  GGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQ 93
Query: 154 VFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
           + T S +VL A ++IVATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AVIG
Sbjct: 94  IETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIG 151
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXX 272
           GG+S +E A  L      V ++      +A +++Q++  +   +D+I N+   E  G+  
Sbjct: 152 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGD-- 209
Query: 273 XXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTS 332
                        +G + +++++G+F  IG  P T +++G ++ +  G II       T+
Sbjct: 210 GSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDA-KCETN 268
Query: 333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
           V GVFAAGD     Y+Q + A G G  A+L A  YL
Sbjct: 269 VKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 304

>pdb|1HYU|A Chain A, Crystal Structure Of Intact Ahpf Length = 521

Iteration: 1
 Score =  119 bits (297), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 85/278 (30%), Positives = 140/278 (50%), Gaps = 15/278 (5%)
Query: 98  GGQLTTTSDVENFPGFPQ---GILGGDLMDRCRNQSLRFGTQIFTETVSKV---DFKSRP 151
           GGQ+  T D+EN+   P+     L G L     +  +     I +++ SK+     +   
Sbjct: 246 GGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDV---IDSQSASKLVPAATEGGL 302
Query: 152 FKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV 210
            ++ T S +VL A ++I+ATGA  + +  PG D +  +G++ C  CDG  P+F+ K +AV
Sbjct: 303 HQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAV 360
Query: 211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGE 270
           IGGG+S +E A  L      V ++      +A +++Q++  +   +D+I N+   E  G+
Sbjct: 361 IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVDIILNAQTTEVKGD 420
Query: 271 XXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH 330
                          +G +  + ++G+F  IG  P T +++G L+ +  G II       
Sbjct: 421 --GSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIID-AKCE 477
Query: 331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
           TSV GVFAAGD     Y+Q + A G G  A+L A  YL
Sbjct: 478 TSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYL 515

>pdb|3CTY|A Chain A, Crystal Structure Of T. Acidophilum Thioredoxin Reductase Length = 319

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/271 (29%), Positives = 119/271 (43%), Gaps = 9/271 (3%)
Query: 94  DIAPGGQLTTTSD-VENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPF 152
           D A  G LT  +  VEN+ GF + I+G +L     + +  +        V  +      F
Sbjct: 46  DKAVAGGLTAEAPLVENYLGF-KSIVGSELAKLFADHAANYAKIREGVEVRSIKKTQGGF 104
Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG 212
            + T+  +  A  VI+ TG   K L   G   ++ +G S C+ CDG   +F+ K +  IG
Sbjct: 105 DIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--LFKGKRVVTIG 162
Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXX 272
           GG+S    A  +++Y   V II     +          +    I  I N+ V E  G+  
Sbjct: 163 GGNSGAIAAISMSEYVKNVTIIEYMPKYMCENAYVQE-IKKRNIPYIMNAQVTEIVGDGK 221
Query: 273 XXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHT 331
                        TG+   ++  G+F  +G  P T F+ D  + L   GYI+       T
Sbjct: 222 KVTGVKYKDRT--TGEEKLIETDGVFIYVGLIPQTSFLKDSGVKLDERGYIVVDS-RQRT 278
Query: 332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362
           SVPGV+AAGDV    + Q  +A G GC AAL
Sbjct: 279 SVPGVYAAGDVTSGNFAQIASAVGDGCKAAL 309

>pdb|3LZW|A Chain A, Crystal Structure Of Ferredoxin-Nadp+ Oxidoreductase From Bacillus Subtilis (Form I) Length = 332

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 125/271 (46%), Gaps = 23/271 (8%)
Query: 98  GGQLTT---TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSR-PF 152
           GGQL+       + +  GFP+ I   +L++  + Q  +F   I   + V  V+ ++   F
Sbjct: 43  GGQLSALYPEKYIYDVAGFPK-IRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVF 101
Query: 153 KVFTDSKSVLADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLA 209
           K+ T+ ++  + TVI+  G  A   +KL+   ++ +   G +     D     F  + +A
Sbjct: 102 KLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQY--EGKNLHYFVDDLQK-FAGRRVA 158
Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYG 269
           ++GGGDSA++ A  L     +V IIHRRD FRA +      L   K++V+   V  E  G
Sbjct: 159 ILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHE-HSVENLHASKVNVLTPFVPAELIG 217
Query: 270 EXXXXXXXXXXXX--XXXTGQVSDLKVS-GLFFAIGHEPATKFVDGQLDLHSDGYIITKP 326
           E                   ++ DL V+ G   ++G  P   +    LD+  +  ++   
Sbjct: 218 EDKIEQLVLEEVKGDRKEILEIDDLIVNYGFVSSLG--PIKNW---GLDIEKNSIVVK-- 270
Query: 327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTG 357
            T  T++ G FAAGD+   + +  + A+G G
Sbjct: 271 STMETNIEGFFAAGDICTYEGKVNLIASGFG 301

>pdb|2ZBW|A Chain A, Crystal Structure Of Thioredoxin Reductase-Like Protein From Thermus Thermophilus Hb8 Length = 335

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 97  PGGQLTTTSD---VENFPGFPQGILGGDLMDRCRNQSLRFG-TQIFTETVSKVDFKSRPF 152
           PGGQLT       + +  GFP+ +   DL+     Q   F       E    ++ +   F
Sbjct: 40  PGGQLTALYPEKYIYDVAGFPK-VYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLF 98
Query: 153 KVFTDS-KSVLADTVIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL 208
           KV T    +  A  VI+A G  A   +++  PG   F  RG+   AV   A   F+ K +
Sbjct: 99  KVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVY-YAVKSKAE--FQGKRV 155
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK 244
            ++GGGDSA++ A  L     ++ +IHRR  FRA +
Sbjct: 156 LIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHE 191

>pdb|1NHR|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|1F8W|A Chain A, Crystal Structure Of Nadh Peroxidase Mutant: R303m Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|1NHS|A Chain A, An L40c Mutation Converts The Cysteine-Sulfenic Acid Redox Centre In Enterococcal Nadh Peroxidase To A Disulfide Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|1NHQ|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|1JOA|A Chain A, Nadh Peroxidase With Cysteine-Sulfenic Acid Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|1NHP|A Chain A, Crystallographic Analyses Of Nadh Peroxidase Cys42ala And Cys42ser Mutants: Active Site Structure, Mechanistic Implications, And An Unusual Environment Of Arg303 Length = 447

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 52/192 (27%), Positives = 76/192 (39%), Gaps = 7/192 (3%)
Query: 164 DTVIVATGAVAKKLQFPGSD---AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           D +I++ GAV  +L  PG D    +  RG                  + VIG G   +E 
Sbjct: 105 DKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIGIEA 164
Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXX 280
           A    K G KV +I   D  R   +  ++  T+   + +  + +  A GE          
Sbjct: 165 AEAFAKAGKKVTVIDILD--RPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR 222
Query: 281 XXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
                T + +      +  A+G  P T ++ G L+LH +G I T      TS P VFA G
Sbjct: 223 VQKVVTDK-NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVG 280
Query: 341 DVQDKKYRQAVT 352
           D    KY  A T
Sbjct: 281 DATLIKYNPADT 292

>pdb|2BC1|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: C44s Nox Length = 490

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 60/292 (20%)
Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLA--DTVIVAT 170
           P+G+   D     + +    G +++ E+ V  +D+ ++      D K+ +   D +I AT
Sbjct: 91  PEGLFYSD-----KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFAT 145
Query: 171 G---------------------AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD-KPL 208
           G                     A  + LQF      +       A  +      +D K +
Sbjct: 146 GSQPILPPIKGAEIKEGSLEFEATLENLQFV---KLYQNSADVIAKLEN-----KDIKRV 197
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAY 268
           AV+G G   +E A    + G +V +I   D+  A     +R LT+     +    +  A+
Sbjct: 198 AVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--YYDRDLTDLMAKNMEEHGIQLAF 255
Query: 269 GEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG-YIITKPG 327
           GE               T + ++  V  +  A+G  P T   +G++DL  +G +++ K  
Sbjct: 256 GETVKEVAGNGKVEKIITDK-NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNK-- 312
Query: 328 TTHTSVPGVFAAGD--------VQDKKY--------RQAVTAAGTGCMAALE 363
              TS+PGV+A GD         +D  Y        R  + AA   C   LE
Sbjct: 313 RQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLE 364

>pdb|2BC0|A Chain A, Structural Analysis Of Streptococcus Pyogenes Nadh Oxidase: Wild-Type Nox Length = 490

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 65/292 (22%), Positives = 112/292 (38%), Gaps = 60/292 (20%)
Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLA--DTVIVAT 170
           P+G+   D     + +    G +++ E+ V  +D+ ++      D K+ +   D +I AT
Sbjct: 91  PEGLFYSD-----KEELESLGAKVYMESPVQSIDYDAKTVTALVDGKNHVETYDKLIFAT 145
Query: 171 G---------------------AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD-KPL 208
           G                     A  + LQF      +       A  +      +D K +
Sbjct: 146 GSQPILPPIKGAEIKEGSLEFEATLENLQFV---KLYQNSADVIAKLEN-----KDIKRV 197
Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAY 268
           AV+G G   +E A    + G +V +I   D+  A     +R LT+     +    +  A+
Sbjct: 198 AVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLAG--YYDRDLTDLMAKNMEEHGIQLAF 255
Query: 269 GEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDG-YIITKPG 327
           GE               T + ++  V  +  A+G  P T   +G++DL  +G +++ K  
Sbjct: 256 GETVKEVAGNGKVEKIITDK-NEYDVDMVILAVGFRPNTTLGNGKIDLFRNGAFLVNK-- 312
Query: 328 TTHTSVPGVFAAGD--------VQDKKY--------RQAVTAAGTGCMAALE 363
              TS+PGV+A GD         +D  Y        R  + AA   C   LE
Sbjct: 313 RQETSIPGVYAIGDCATIYDNATRDTNYIALASNAVRTGIVAAHNACGTDLE 364

>pdb|3AB1|A Chain A, Crystal Structure Of Ferredoxin Nadp+ Oxidoreductase Length = 360

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 111/268 (41%), Gaps = 41/268 (15%)
Query: 98  GGQLTT---TSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI-FTETVSK-VDFKSRPF 152
           GGQL        + +  GFP+ +   DL++    Q+ R+   +   ETV+K        F
Sbjct: 50  GGQLAALYPEKHIYDVAGFPE-VPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTF 108
Query: 153 KVFTDSKSVL-ADTVIVATGAVA---KKL-------QFPGSDAFWNRGISACAVCDGAAP 201
           +  T++ +V  +  V++A G  A   +KL          GS  ++    +  +V D    
Sbjct: 109 ETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYY----AVKSVED---- 160
Query: 202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN---RALTNPKIDV 258
            F+ K + ++GGGDSA++    L K  + V ++HR   F+      +   RA  N  IDV
Sbjct: 161 -FKGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDV 219
Query: 259 IWNSVVLEAYGEXXXXXXXXXXXXXXXTGQVSDLKVSGLFFAIGHE----PATKFVDGQL 314
              +   E                    G    ++   L   IG +    P  ++    L
Sbjct: 220 YLET---EVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLGPLARW---DL 273
Query: 315 DLHSDGYIITKPGTTHTSVPGVFAAGDV 342
           +L+ +  ++       TSV G++AAGD+
Sbjct: 274 ELYENALVVDS--HMKTSVDGLYAAGDI 299

>pdb|4EM3|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Mevs-Coa Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

>pdb|1YQZ|A Chain A, Structure Of Coenzyme A-Disulfide Reductase From Staphylococcus Aureus Refined At 1.54 Angstrom Resolution Length = 438

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 107 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 166
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 167 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 223
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 224 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 278
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 279 ATSHYRH 285

>pdb|4EQW|A Chain A, Crystal Structure Of The Y361f, Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

>pdb|4EQS|A Chain A, Crystal Structure Of The Y419f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

>pdb|4EQR|A Chain A, Crystal Structure Of The Y361f Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

>pdb|4EMW|A Chain A, Crystal Structure Of Staphylococcus Aureus Bound With The Covalent Inhibitor Etvc-Coa Length = 436

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

>pdb|4EQX|A Chain A, Crystal Structure Of The C43s Mutant Of Staphylococcus Aureus Coadr Length = 437

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 9/187 (4%)
Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANF 223
           D +I++ GA A  L F     F  R +      D      +   + V+G G  ++E    
Sbjct: 106 DKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLEN 165
Query: 224 LTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEXXXXXXXXXXXXX 283
           L + G    +IHR D  + +K+M +  +  P +D +    +     E             
Sbjct: 166 LYERGLHPTLIHRSD--KINKLM-DADMNQPILDELDKREIPYRLNEEINAINGNEITFK 222
Query: 284 XXTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  D+ + G    +G  P +KF++   + L   G+I        T+VP ++A GD+
Sbjct: 223 SGKVEHYDMIIEG----VGTHPNSKFIESSNIKLDRKGFIPVN-DKFETNVPNIYAIGDI 277
Query: 343 QDKKYRQ 349
               YR 
Sbjct: 278 ATSHYRH 284

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	382
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	0.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	0.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	0.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	0.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	0.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	1e-178
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	1e-175
3r9u_A	315	Thioredoxin reductase; structural genomics, center	1e-171
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	1e-157
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	1e-151
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	1e-149
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	1e-103
4fk1_A	304	Putative thioredoxin reductase; structural genomic	1e-90
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	9e-81
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	3e-74
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	6e-67
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	7e-60
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	1e-18
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	4e-16
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	6e-16
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	3e-15
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	1e-14
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	3e-13
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	7e-13
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	8e-13
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	1e-12
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	2e-12
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	2e-12
4dna_A	463	Probable glutathione reductase; structural genomic	2e-12
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	3e-12
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	3e-12
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	4e-12
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	1e-11
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	1e-11
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	1e-11
1fec_A	490	Trypanothione reductase; redox-active center, oxid	2e-11
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	2e-11
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	5e-11
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	8e-11
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	1e-10
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	2e-10
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	2e-10
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	2e-10
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	4e-10
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	6e-10
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	8e-10
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	2e-09
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	4e-09
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	1e-08
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	1e-08
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	3e-08
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	2e-07
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	3e-07
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	3e-07
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	3e-07
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	4e-07
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	5e-07
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	5e-07
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	1e-06
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	2e-06
1yqz_A	438	Coenzyme A disulfide reductase; oxidoreductase; HE	2e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-06
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	3e-06
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	4e-06
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	4e-06
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	7e-06
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	9e-06
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	1e-05
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	3e-05
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	3e-05
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	6e-05
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	6e-05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	8e-05
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	1e-04
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	1e-04
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	3e-04
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	5e-04
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	6e-04
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	9e-04

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* Length = 333

 Score =  599 bits (1548), Expect = 0.0
 Identities = 271/333 (81%), Positives = 305/333 (91%), Gaps = 4/333 (1%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           M+ ++T  T++CI+GSGPAAHTAAIYAARAELKP+LFEGWMANDIAPGGQLTTT+DVENF
Sbjct: 1   MNGLETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENF 60

Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVAT 170
           PGFP+GILG +L D+ R QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+A 
Sbjct: 61  PGFPEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAI 120

Query: 171 GAVAKKLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           GAVAK+L F GS      FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTK
Sbjct: 121 GAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTK 180

Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT 286
           YGSKVYIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+G++ VLGGLKVKN+VT
Sbjct: 181 YGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVT 240

Query: 287 GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK 346
           G VSDLKVSGLFFAIGHEPATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKK
Sbjct: 241 GDVSDLKVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKK 300

Query: 347 YRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSE 379
           YRQA+TAAGTGCMAAL+AEHYLQEIGSQE KS+
Sbjct: 301 YRQAITAAGTGCMAALDAEHYLQEIGSQEGKSD 333

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* Length = 338

 Score =  584 bits (1507), Expect = 0.0
 Identities = 205/331 (61%), Positives = 252/331 (76%), Gaps = 6/331 (1%)

Query: 45  PKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT 104
              S  +     +  KV IIGSGPAAHTAAIY ARAE+KPIL+EG MAN IA GGQLTTT
Sbjct: 9   HHSSGLVPRGSHVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT 68

Query: 105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT----DSKS 160
           +++ENFPGFP G+ G +LMDR R QS +FGT+I TETVSKVD  S+PFK++T    D++ 
Sbjct: 69  TEIENFPGFPDGLTGSELMDRMREQSTKFGTEIITETVSKVDLSSKPFKLWTEFNEDAEP 128

Query: 161 VLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
           V  D +I+ATGA AK++  PG + +W +GISACAVCDGA PIFR+KPLAVIGGGDSA EE
Sbjct: 129 VTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVIGGGDSACEE 188

Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280
           A FLTKYGSKV+++ R+D  RAS IMQ RA  N KI++++N+V LEA   GD K+L  L+
Sbjct: 189 AQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAK--GDGKLLNALR 246

Query: 281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
           +KN    + +DL VSGLF+AIGH PATK V GQ+D    GYI T PG++ TSVPG FAAG
Sbjct: 247 IKNTKKNEETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAG 306

Query: 341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEI 371
           DVQD KYRQA+T+AG+GCMAAL+AE YL  +
Sbjct: 307 DVQDSKYRQAITSAGSGCMAALDAEKYLTSL 337

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} Length = 335

 Score =  546 bits (1409), Expect = 0.0
 Identities = 160/341 (46%), Positives = 211/341 (61%), Gaps = 15/341 (4%)

Query: 42  TTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL 101
           T  P    A   ++     V +IGSGPA +TAA+YAARA+L P++FEG      + GG L
Sbjct: 2   TAPPVHDRAHHPVR----DVIVIGSGPAGYTAALYAARAQLAPLVFEG-----TSFGGAL 52

Query: 102 TTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSV 161
            TT+DVEN+PGF  GI G +LMD  R Q+LRFG  +  E V  V        V T     
Sbjct: 53  MTTTDVENYPGFRNGITGPELMDEMREQALRFGADLRMEDVESVSLHGPLKSVVTADGQT 112

Query: 162 -LADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
             A  VI+A GA A+ LQ PG      RG+S+CA CDG    FRD+ +AVIGGGDSAMEE
Sbjct: 113 HRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGGDSAMEE 170

Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280
           A FLT++   V ++HRRD FRASKIM +RA  N KI  + N  V+   G+     + GL+
Sbjct: 171 ATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDT---TVTGLR 227

Query: 281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAG 340
           V++  TG  + L V+G+F AIGHEP +  V   +D+  DGY++ +  TT TS+PGVFAAG
Sbjct: 228 VRDTNTGAETTLPVTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAG 287

Query: 341 DVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSESS 381
           D+ D+ YRQAVTAAG+GC AA++AE +L E  +  +   + 
Sbjct: 288 DLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAATGEADSTD 328

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* Length = 320

 Score =  527 bits (1361), Expect = 0.0
 Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 18/328 (5%)

Query: 56  TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGPA +TAA+YAARA L+P+L  G     +  GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITG-----MEKGGQLTTTTEVENWPGDPN 57

Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117

Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            L  P  +AF  RG+SACA  DG    +R++ +AVIGGG++A+EEA +L+   S+V++IH
Sbjct: 118 YLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIH 175

Query: 236 RRDSFRASKIMQNRALT---NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VSD 291
           RRD FRA KI+  R +    N  I +  N  + E    GD+  + G+++++      +  
Sbjct: 176 RRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVT--GDQMGVTGVRLRDTQNSDNIES 233

Query: 292 LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKY 347
           L V+GLF AIGH P T   +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  Y
Sbjct: 234 LDVAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIY 292

Query: 348 RQAVTAAGTGCMAALEAEHYLQEIGSQE 375
           RQA+T+AGTGCMAAL+AE YL  +   +
Sbjct: 293 RQAITSAGTGCMAALDAERYLDGLADAK 320

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} Length = 325

 Score =  522 bits (1346), Expect = 0.0
 Identities = 138/335 (41%), Positives = 191/335 (57%), Gaps = 15/335 (4%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           M         V IIG GPA  TAAIY  RA+L  ++ E        PGGQ+  + +VENF
Sbjct: 1   MTAPTAHDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEK-----GMPGGQIAWSEEVENF 55

Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDF----KSRPFKVFTDSKSVLADTV 166
           PGFP+ I G +L  R   Q+ +FG ++  + V  V         PF V   +    A  V
Sbjct: 56  PGFPEPIAGMELAQRMHQQAEKFGAKVEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAV 115

Query: 167 IVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           I+ATGA  +KL  PG D FW +G+S CA CDG    ++ K + VIGGGD+A+EE  FLTK
Sbjct: 116 ILATGADPRKLGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIGGGDAAVEEGMFLTK 173

Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT 286
           +  +V +IHRRD+ RA+K+ Q RA  NPK+  IW++ V E    G   V  G+K++NL T
Sbjct: 174 FADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQ--GADSV-SGVKLRNLKT 230

Query: 287 GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK 346
           G+VS+L   G+F  IGH P T FV   + L  DGY+  +    +T++P +FAAGDV D  
Sbjct: 231 GEVSELATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVR-DEIYTNIPMLFAAGDVSDYI 289

Query: 347 YRQAVTAAGTGCMAALEAEHYLQEIGSQEDKSESS 381
           YRQ  T+ G G  AA+  E  L  +  + ++  ++
Sbjct: 290 YRQLATSVGAGTRAAMMTERQLAALEVEGEEVTAA 324

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* Length = 311

 Score =  497 bits (1282), Expect = e-178
 Identities = 112/318 (35%), Positives = 165/318 (51%), Gaps = 17/318 (5%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGIL 118
              IIG GPA  +A +YA R  +K  +LFE        PGGQ+T +S++EN+PG  + + 
Sbjct: 3   DCAIIGGGPAGLSAGLYATRGGVKNAVLFEK-----GMPGGQITGSSEIENYPGVKEVVS 57

Query: 119 GGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKL 177
           G D M   + Q  RFG +     V +V  K   F +  +  K+  A +VI+ATG   K+ 
Sbjct: 58  GLDFMQPWQEQCFRFGLKHEMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRT 117

Query: 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237
              G   +W +G+S CA CDG    +++K +AV+GGGD+A+EEA +L     KVY+IHRR
Sbjct: 118 GIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRR 175

Query: 238 DSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297
           D FR + I    A  N KI+ +   VV E  G+     +  L +KN  T +  +L V G 
Sbjct: 176 DGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASG--VSSLSIKNTATNEKRELVVPGF 233

Query: 298 FFAIGHEPATKFVDGQ-----LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
           F  +G++     +  +           G I+    +  T+V G+FAAGD++    +Q V 
Sbjct: 234 FIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVD-FSMKTNVQGLFAAGDIRIFAPKQVVC 292

Query: 353 AAGTGCMAALEAEHYLQE 370
           AA  G  AAL    YL+ 
Sbjct: 293 AASDGATAALSVISYLEH 310

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* Length = 323

 Score =  489 bits (1261), Expect = e-175
 Identities = 122/338 (36%), Positives = 183/338 (54%), Gaps = 20/338 (5%)

Query: 42  TTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL 101
           +  P+ + ++   +  K  V I+G GPAA+ AA+Y+AR  LK ++          PGGQL
Sbjct: 2   SLLPR-TTSVKPGE--KFDVIIVGLGPAAYGAALYSARYMLKTLVIGE------TPGGQL 52

Query: 102 TTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSV 161
           T    V+++ G    I   D++        ++   +  + V K++ +   F V T  K  
Sbjct: 53  TEAGIVDDYLGLI-EIQASDMIKVFNKHIEKYEVPVLLDIVEKIENRGDEFVVKTKRKGE 111

Query: 162 L-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
             AD+VI+  G   +KL  PG   F  RGIS C+V D    +F+++ +AVIGGGDSA+E 
Sbjct: 112 FKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAP--LFKNRVVAVIGGGDSALEG 169

Query: 221 ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK 280
           A  L+ Y +KVY+IHRRD+F+A  I        P ++ + NSVV E   +GDK V   + 
Sbjct: 170 AEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEI--KGDKVV-KQVV 226

Query: 281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAA 339
           V+NL TG++ +L V+G+F  IG +P T F     ++  ++GYI        TSVPGVFAA
Sbjct: 227 VENLKTGEIKELNVNGVFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAA 285

Query: 340 GDVQDK--KYRQAVTAAGTGCMAALEAEHYLQEIGSQE 375
           GD       +RQ +TA   G +AA  A  Y+ E   ++
Sbjct: 286 GDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKKGKK 323

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} Length = 315

 Score =  478 bits (1234), Expect = e-171
 Identities = 119/319 (37%), Positives = 176/319 (55%), Gaps = 17/319 (5%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILG 119
            V IIG GPA  +A +YA R  LK ++    M     PGGQ+T++S++EN+PG  Q + G
Sbjct: 6   DVAIIGGGPAGLSAGLYATRGGLKNVV----MFEKGMPGGQITSSSEIENYPGVAQVMDG 61

Query: 120 GDLMDRCRNQSLRFGTQIFTETVSKVDFKS-RPFKVFTDS-KSVLADTVIVATGAVAKKL 177
              M     Q +RFG +     V ++   S   F +  +  K+ LA  VIV TG+  KK 
Sbjct: 62  ISFMAPWSEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTELAKAVIVCTGSAPKKA 121

Query: 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237
            F G D F+ +G+S CA CDG    +++K +AV+GGGD+A+EEA +L    SK+Y+IHRR
Sbjct: 122 GFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVLGGGDTALEEALYLANICSKIYLIHRR 179

Query: 238 DSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297
           D FRA+     +   N KI++I ++ V E Y  GDK  + G+KVK    G + DL V G+
Sbjct: 180 DEFRAAPSTVEKVKKNEKIELITSASVDEVY--GDKMGVAGVKVKL-KDGSIRDLNVPGI 236

Query: 298 FFAIGHEPATKFVDGQ-----LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVT 352
           F  +G     + +         ++   G +        TSV G+FAAGD++    +Q + 
Sbjct: 237 FTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVIC 295

Query: 353 AAGTGCMAALEAEHYLQEI 371
           AAG G +AAL A  Y++ +
Sbjct: 296 AAGDGAVAALSAMAYIESL 314

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 Length = 310

 Score =  444 bits (1145), Expect = e-157
 Identities = 99/316 (31%), Positives = 163/316 (51%), Gaps = 17/316 (5%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V I+GSGPA   AAIY+AR  ++  L           GGQ+  T D+EN+   P+   G 
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGE------RFGGQILDTVDIENYISVPK-TEGQ 56

Query: 121 DLMDRCRNQSLRFGTQIF----TETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAK 175
            L    +     +   +        +     +    ++ T S +VL A ++IVATGA  +
Sbjct: 57  KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWR 116

Query: 176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIH 235
            +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++ 
Sbjct: 117 NMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLE 174

Query: 236 RRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295
                +A +++Q++  +   +D+I N+   E  G+G K  + GL+ ++ V+G + +++++
Sbjct: 175 FAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSK--VVGLEYRDRVSGDIHNIELA 232

Query: 296 GLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
           G+F  IG  P T +++G ++ +  G II       T+V GVFAAGD     Y+Q + A G
Sbjct: 233 GIFVQIGLLPNTNWLEGAVERNRMGEIIID-AKCETNVKGVFAAGDCTTVPYKQIIIATG 291

Query: 356 TGCMAALEAEHYLQEI 371
            G  A+L A  YL   
Sbjct: 292 EGAKASLSAFDYLIRT 307

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} Length = 319

 Score =  427 bits (1100), Expect = e-151
 Identities = 92/311 (29%), Positives = 140/311 (45%), Gaps = 13/311 (4%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V I+G+G A  +AA+YAAR+     + +  +      GG       VEN+ GF   I+G 
Sbjct: 19  VVIVGAGAAGFSAAVYAARSGFSVAILDKAV-----AGGLTAEAPLVENYLGFK-SIVGS 72

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP 180
           +L     + +  +        V  +      F + T+  +  A  VI+ TG   K L   
Sbjct: 73  ELAKLFADHAANYAKIREGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVK 132

Query: 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
           G   ++ +G S C+ CDG   +F+ K +  IGGG+S    A  +++Y   V II     +
Sbjct: 133 GESEYFGKGTSYCSTCDG--YLFKGKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY 190

Query: 241 RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFA 300
                     +    I  I N+ V E  G+G K  + G+K K+  TG+   ++  G+F  
Sbjct: 191 MCENAYVQE-IKKRNIPYIMNAQVTEIVGDGKK--VTGVKYKDRTTGEEKLIETDGVFIY 247

Query: 301 IGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCM 359
           +G  P T F+    + L   GYI+       TSVPGV+AAGDV    + Q  +A G GC 
Sbjct: 248 VGLIPQTSFLKDSGVKLDERGYIVVDS-RQRTSVPGVYAAGDVTSGNFAQIASAVGDGCK 306

Query: 360 AALEAEHYLQE 370
           AAL        
Sbjct: 307 AALSLYSDSIS 317

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A Length = 521

 Score =  430 bits (1109), Expect = e-149
 Identities = 103/353 (29%), Positives = 170/353 (48%), Gaps = 19/353 (5%)

Query: 23  TFFGIVTTSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAEL 82
             FG    +     A        + + A+++       V I+GSGPA   AA+Y+AR  +
Sbjct: 179 KEFGQGRMTLTEIVAKVDTGAEKRAAEALNKRD--AYDVLIVGSGPAGAAAAVYSARKGI 236

Query: 83  KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT--- 139
           +  L           GGQ+  T D+EN+   P    G  L    +     +   +     
Sbjct: 237 RTGLMGE------RFGGQVLDTVDIENYISVP-KTEGQKLAGALKAHVSDYDVDVIDSQS 289

Query: 140 -ETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD 197
              +     +    ++ T S +VL A ++I+ATGA  + +  PG D +  +G++ C  CD
Sbjct: 290 ASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCD 349

Query: 198 GAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKID 257
           G  P+F+ K +AVIGGG+S +E A  L      V ++      +A +++Q++  +   +D
Sbjct: 350 G--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKVRSLKNVD 407

Query: 258 VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLH 317
           +I N+   E  G+G K  + GL+ ++ V+G +  + ++G+F  IG  P T +++G L+ +
Sbjct: 408 IILNAQTTEVKGDGSK--VVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTHWLEGALERN 465

Query: 318 SDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
             G II       TSV GVFAAGD     Y+Q + A G G  A+L A  YL  
Sbjct: 466 RMGEIIIDA-KCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIR 517

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} Length = 297

 Score =  305 bits (783), Expect = e-103
 Identities = 62/315 (19%), Positives = 101/315 (32%), Gaps = 31/315 (9%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V IIG   A  +AA+   RA    +L +           +  +      F G   G   G
Sbjct: 5   VIIIGGSYAGLSAALQLGRARKNILLVDA-----GERRNRFAS--HSHGFLGQD-GKAPG 56

Query: 121 DLMDRCRNQSLRFGT-QIFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQ 178
           +++   R Q  R+ T       V+        F V  D  +   A  +I+A G   +  +
Sbjct: 57  EIIAEARRQIERYPTIHWVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPE 116

Query: 179 FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
             G    W   +  C  C G         + VI     A+  A  L  +G   +  +   
Sbjct: 117 IAGLRERWGSAVFHCPYCHGYE--LDQGKIGVIAASPMAIHHALMLPDWGETTFFTNGIV 174

Query: 239 SFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLF 298
              A +     AL   +   +  + + E  G  D           +V      + ++GLF
Sbjct: 175 EPDADQ----HALLAARGVRVETTRIREIAGHAD-----------VVLADGRSIALAGLF 219

Query: 299 FAIGHEPATKFVDG---QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
                     +++     ++    G  I       T+  G+FA GDV          A G
Sbjct: 220 TQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQTTARGIFACGDVAR-PAGSVALAVG 278

Query: 356 TGCMAALEAEHYLQE 370
            G MA   A   +  
Sbjct: 279 DGAMAGAAAHRSILF 293

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* Length = 304

 Score =  274 bits (702), Expect = 1e-90
 Identities = 61/315 (19%), Positives = 123/315 (39%), Gaps = 27/315 (8%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
             +IG+GPA   A++   RA  +  LF+           ++T  S    F     GI   
Sbjct: 9   CAVIGAGPAGLNASLVLGRARKQIALFDNNT-----NRNRVTQNS--HGFITRD-GIKPE 60

Query: 121 DLMDRCRNQSLRFGT-QIFTETVSKVDFKS-RPFKVFTDSKSVL-ADTVIVATGAVAKKL 177
           +  +   N+ +++ +   + +TV  +  +S   F++ T   +   A+ V++ATG   +  
Sbjct: 61  EFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFP 120

Query: 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS-AMEEANFLTKYGSKVYIIHR 236
             P    ++ + + +C  CDG     +D+PL +I   +   +     +  + + + I   
Sbjct: 121 SIPNVREYYGKSLFSCPYCDG--WELKDQPLIIISENEDHTLHMTKLVYNWSTDLVIATN 178

Query: 237 RDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG 296
            +    +       L+N  I VI  S+     GEG         +K +       ++ +G
Sbjct: 179 GNELSQT---IMDELSNKNIPVITESIR-TLQGEGGY-------LKKVEFHSGLRIERAG 227

Query: 297 LFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG 355
            F         +F+     +L S+G  +       TS   ++ AG+   +     + AA 
Sbjct: 228 GFIVPTFFRPNQFIEQLGCELQSNGTFVIDD-FGRTSEKNIYLAGETTTQGPSSLIIAAS 286

Query: 356 TGCMAALEAEHYLQE 370
            G  AA+     + +
Sbjct: 287 QGNKAAIAINSDITD 301

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* Length = 180

 Score =  243 bits (624), Expect = 9e-81
 Identities = 36/186 (19%), Positives = 67/186 (36%), Gaps = 13/186 (6%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V ++G GP+  +AA++ ARA LK ++ +G          ++   S V N+PG      G 
Sbjct: 4   VIVVGGGPSGLSAALFLARAGLKVLVLDG-------GRSKVKGVSRVPNYPGLLDEPSGE 56

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP 180
           +L+ R    + R+G ++    V  V      F+V T+     A+ +++ T         P
Sbjct: 57  ELLRRLEAHARRYGAEVRPGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPTL---P 113

Query: 181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
                  RG +     +G         +   G     +     ++        +H     
Sbjct: 114 SLLGLTRRG-AYIDTDEGG--RTSYPRVYAAGVARGKVPGHAIISAGDGAYVAVHLVSDL 170

Query: 241 RASKIM 246
           R     
Sbjct: 171 RGEPYK 176

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* Length = 332

 Score =  233 bits (596), Expect = 3e-74
 Identities = 84/330 (25%), Positives = 142/330 (43%), Gaps = 26/330 (7%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT---TSDV 107
           M E       + IIG GP     A Y    +    + E    +    GGQL+       +
Sbjct: 1   MREDTK-VYDITIIGGGPVGLFTAFYGGMRQASVKIIE----SLPQLGGQLSALYPEKYI 55

Query: 108 ENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT-ETVSKVDFKS-RPFKVFTDSKSVLADT 165
            +  GFP  I   +L++  + Q  +F   I   + V  V+ ++   FK+ T+ ++  + T
Sbjct: 56  YDVAGFP-KIRAQELINNLKEQMAKFDQTICLEQAVESVEKQADGVFKLVTNEETHYSKT 114

Query: 166 VIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEAN 222
           VI+  G  A   +KL+   ++ +  + +    V D     F  + +A++GGGDSA++ A 
Sbjct: 115 VIITAGNGAFKPRKLELENAEQYEGKNLHYF-VDDLQ--KFAGRRVAILGGGDSAVDWAL 171

Query: 223 FLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK 282
            L     +V IIHRRD FRA +      L   K++V+   V  E  GE     +  L ++
Sbjct: 172 MLEPIAKEVSIIHRRDKFRAHEHSVEN-LHASKVNVLTPFVPAELIGEDK---IEQLVLE 227

Query: 283 NLVTGQVSDLKVSGLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSVPGVFAAGD 341
            +   +   L++  L    G   +   +    LD+     I+ K  T  T++ G FAAGD
Sbjct: 228 EVKGDRKEILEIDDLIVNYGFVSSLGPIKNWGLDIE-KNSIVVKS-TMETNIEGFFAAGD 285

Query: 342 VQ--DKKYRQAVTAAGTGCMAALEAEHYLQ 369
           +   + K     +  G    A   A+ Y+ 
Sbjct: 286 ICTYEGKVNLIASGFGEAPTAVNNAKAYMD 315

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} Length = 335

 Score =  214 bits (547), Expect = 6e-67
 Identities = 88/333 (26%), Positives = 131/333 (39%), Gaps = 30/333 (9%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT---TSDV 107
           M       T V I+G+GP    A  Y     L     +        PGGQLT       +
Sbjct: 1   MAAD---HTDVLIVGAGPTGLFAGFYVGMRGLSFRFVD---PLPE-PGGQLTALYPEKYI 53

Query: 108 ENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT-ETVSKVDFKSRPFKVFTDS-KSVLADT 165
            +  GFP  +   DL+     Q   F       E    ++ +   FKV T    +  A  
Sbjct: 54  YDVAGFP-KVYAKDLVKGLVEQVAPFNPVYSLGERAETLEREGDLFKVTTSQGNAYTAKA 112

Query: 166 VIVATGAVA---KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEAN 222
           VI+A G  A   +++  PG   F  RG+    V   A   F+ K + ++GGGDSA++ A 
Sbjct: 113 VIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKA--EFQGKRVLIVGGGDSAVDWAL 169

Query: 223 FLTKYGSKVYIIHRRDSFRASKIMQNR---ALTNPKIDVIWNSVVLEAYGEGDKKVLGGL 279
            L     ++ +IHRR  FRA +        A    +++V+    +     EGD++V    
Sbjct: 170 NLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRV--EGDERVR-WA 226

Query: 280 KVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSVPGVFA 338
            V +  T +   L+V  +    G+      +    L L     I     T  TS+PGV+A
Sbjct: 227 VVFHNQTQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDT-TMATSIPGVYA 284

Query: 339 AGDVQ--DKKYRQAVTAAGTGCMAALEAEHYLQ 369
            GD+     K    V   G   +AA  A  Y  
Sbjct: 285 CGDIVTYPGKLPLIVLGFGEAAIAANHAAAYAN 317

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} Length = 360

 Score =  196 bits (501), Expect = 7e-60
 Identities = 77/328 (23%), Positives = 131/328 (39%), Gaps = 29/328 (8%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT---TSDVENFPGFP 114
              + IIG GP    AA       +   + E   +     GGQL        + +  GFP
Sbjct: 14  MRDLTIIGGGPTGIFAAFQCGMNNISCRIIE---SMPQ-LGGQLAALYPEKHIYDVAGFP 69

Query: 115 QGILGGDLMDRCRNQSLRFGTQIFT-ETVSKVDFKS-RPFKVFTDS-KSVLADTVIVATG 171
             +   DL++    Q+ R+   +   ETV+K        F+  T++     +  V++A G
Sbjct: 70  -EVPAIDLVESLWAQAERYNPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAG 128

Query: 172 AVA---KKLQFPGS-DAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY 227
             A   +KL   G+ D      +   AV       F+ K + ++GGGDSA++    L K 
Sbjct: 129 LGAFEPRKLPQLGNIDHLTGSSVY-YAVKSVE--DFKGKRVVIVGGGDSALDWTVGLIKN 185

Query: 228 GSKVYIIHRRDSFRASKIMQNR---ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL 284
            + V ++HR   F+      +    A  N  IDV   + V     E    VL  + +++ 
Sbjct: 186 AASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASI--EESNGVLTRVHLRS- 242

Query: 285 VTGQVSDLKVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV- 342
             G    ++   L   IG +     +    L+L+ +  ++       TSV G++AAGD+ 
Sbjct: 243 SDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDS-HMKTSVDGLYAAGDIA 300

Query: 343 -QDKKYRQAVTAAGTGCMAALEAEHYLQ 369
               K +   T      MA   +  Y++
Sbjct: 301 YYPGKLKIIQTGLSEATMAVRHSLSYIK 328

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} Length = 357

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 59/363 (16%), Positives = 118/363 (32%), Gaps = 67/363 (18%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG---------QLTTTSDVE 108
              V +IG G +  +A  +  R+ L  ++ +   A   +PGG          L + +   
Sbjct: 3   SVDVVVIGGGQSGLSAGYFLRRSGLSYVILD---AEA-SPGGAWQHAWHSLHLFSPAGWS 58

Query: 109 NFPGFP-----------QGILGGDLMDRCRNQSLRFGTQI-FTETVSKVDFKSRPFKVFT 156
           + PG+P             +L    + +      ++   +     V +V       +V  
Sbjct: 59  SIPGWPMPASQGPYPARAEVL--AYLAQYEQ---KYALPVLRPIRVQRVSHFGERLRVVA 113

Query: 157 -DSKSVLADTVIVATGAVAKKL--QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG 213
            D +  LA  VI ATG   +    ++ G ++F    + +      A   F    +A+IGG
Sbjct: 114 RDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTPAP--FAGMRVAIIGG 171

Query: 214 GDSAMEEANFLTKYGSKVYIIHRRDSFRASKI-------------MQNRALTNPKI---- 256
           G+S  +    ++      +I     +F A  +                +    P +    
Sbjct: 172 GNSGAQILAEVSTVAETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGG 231

Query: 257 --DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV-----SDLKVSGLFFAIGHEPATKF 309
             D++    VL+A   G    +            +     ++     + +  G  PA   
Sbjct: 232 FGDIVMVPPVLDARARGVLAAVPP--PARFSPTGMQWADGTERAFDAVIWCTGFRPALSH 289

Query: 310 VDGQLDLHSDGYIITKP-GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL 368
           + G   +   G +     G    +VP V+  G            A+ T       A   +
Sbjct: 290 LKGLDLVTPQGQVEVDGSGLRALAVPSVWLLGYGD-----WNGMASATLIGVTRYAREAV 344

Query: 369 QEI 371
           +++
Sbjct: 345 RQV 347

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025

 Score = 79.5 bits (196), Expect = 4e-16
 Identities = 68/375 (18%), Positives = 122/375 (32%), Gaps = 62/375 (16%)

Query: 44  APKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPI-LFEGWMANDIAPGGQLT 102
            P + +     +    K+ ++G+GPA+ + A + AR     I +FE     +   GG  T
Sbjct: 173 NPCLPSQEKMPEAYSAKIALLGAGPASISCASFLARLGYSDITIFE---KQE-YVGGLST 228

Query: 103 TTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKVFTDSKSV 161
           +          PQ  L  D+++         G +I     +S+ +            K  
Sbjct: 229 S--------EIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSENEI------TLNTLKEE 274

Query: 162 LADTVIVATGA-VAKKLQFPGSDAFWNRGI-------------SACAVCDGAAPIFR-DK 206
                 +  G    K             G              S   +C   +P+     
Sbjct: 275 GYKAAFIGIGLPEPKTDDIFQGLTQDQ-GFYTSKDFLPLVAKSSKAGMCACHSPLPSIRG 333

Query: 207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD--SFRASKIMQNRALTNPKIDVIWNSV 263
            + V+G GD+A + A    + G  +V+++ R+   + RA       A    K + +    
Sbjct: 334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKEE-KCEFLPFLS 392

Query: 264 VLEAYGEGDKKVLGGLKVK----------NLVTGQVSDLKVSGLFFAIG---HEPATKFV 310
             +   +G +  +  ++            N    Q+  LK   +  A G    +P  K  
Sbjct: 393 PRKVIVKGGR--IVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEA 450

Query: 311 DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQA---VTAAGTGCMAALEAEHY 367
              +  +        P T  TS P VFA GD+       A   V +   G  A+     Y
Sbjct: 451 LSPIKFNRWDLPEVDPETMQTSEPWVFAGGDI----VGMANTTVESVNDGKQASWYIHKY 506

Query: 368 LQEIGSQEDKSESSL 382
           +Q        ++  L
Sbjct: 507 IQAQYGASVSAKPEL 521

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} Length = 369

 Score = 77.5 bits (191), Expect = 6e-16
 Identities = 57/318 (17%), Positives = 91/318 (28%), Gaps = 45/318 (14%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKP-ILFEGWMANDIA------PG-GQLTTTSDVEN 109
             KV IIG+G A    AI      +   I+ E      +       P   +  T S   N
Sbjct: 4   HHKVAIIGAGAAGIGMAITLKDFGITDVIILE---KGTVGHSFKHWPKSTRTITPSFTSN 60

Query: 110 FPGFPQGILGGDLMDRCRNQSLRFGTQ------------------IFTETVSKVDFKSRP 151
             G P               +    +                        V+ +      
Sbjct: 61  GFGMPDMNAISMDTSPAFTFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAY 120

Query: 152 FKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI 211
           + + T +++  AD + VATG       FP     +  GI    + D     F      VI
Sbjct: 121 YTIATTTETYHADYIFVATGD----YNFPKKPFKY--GIHYSEIEDFDN--FNKGQYVVI 172

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRAL---TNPKID-VIWNSVVLEA 267
           GG +S  + A  L K GS + +              +  L   T  ++  VI     +E 
Sbjct: 173 GGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARIEM 232

Query: 268 YGEGDKKVLGGLKVKNLVT---GQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIIT 324
                 K +     +  ++   GQ        +            V  QL + ++  I  
Sbjct: 233 NVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKNPIVQ-QLFVTTNQDIKL 291

Query: 325 KPGTTHTSVPGVFAAGDV 342
                 T  P +F  G  
Sbjct: 292 TTHDESTRYPNIFMIGAT 309

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} Length = 690

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 46/324 (14%), Positives = 84/324 (25%), Gaps = 67/324 (20%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---ENFPGFPQG 116
           +V ++G+GP+   AA          +L E   A     GG++T  S +     +    + 
Sbjct: 393 RVLVVGAGPSGLEAARALGVRGYDVVLAE---AGR-DLGGRVTQESALPGLSAWGRVKE- 447

Query: 117 ILGGDLMDRCR---NQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV 173
                         N  +   + +  + + +  F                + VI ATGA 
Sbjct: 448 ----YREAVLAELPNVEIYRESPMTGDDIVEFGF----------------EHVITATGAT 487

Query: 174 AKKLQFPGSDAFWNRGI------SACAVCDGAAPIFRDKPLAVIGGGDS--AMEEANFLT 225
            +                         +  G  P    K + V            A  L 
Sbjct: 488 WRTDGVARFHTTALPIAEGMQVLGPDDLFAGRLPD--GKKVVVYDDDHYYLGGVVAELLA 545

Query: 226 KYGSKVYIIHRRDSFRASKIMQNRA------LTNPKIDVIWNSVVLEAYGEGDKKVLGGL 279
           + G +V I+       +              L    +  + +  V+            G+
Sbjct: 546 QKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAG-------GV 598

Query: 280 KVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAA 339
            V++       +L+   +       P  +      DL                +  V   
Sbjct: 599 TVRDTYASIERELECDAVVMVTARLPREELYL---DL--------VARRDAGEIASVRGI 647

Query: 340 GDVQDKKYRQAVTAAGTGCMAALE 363
           GD           A  +G  AA E
Sbjct: 648 GDA--WAPGTIAAAVWSGRRAAEE 669

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 500

 Score = 74.2 bits (183), Expect = 1e-14
 Identities = 37/250 (14%), Positives = 80/250 (32%), Gaps = 40/250 (16%)

Query: 142 VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-- 199
           +      +       + + +    +++A G         G +      IS     D    
Sbjct: 121 IKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVFPPVKGIE----NTIS----SDEFFN 172

Query: 200 --APIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRAL 251
                   K + ++G G  A+E  N + + G   YI  R +            +++   +
Sbjct: 173 IKES----KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLE-NDM 227

Query: 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311
               I+++  + V+E     D      L +   ++          + + +G  P T+   
Sbjct: 228 KKNNINIVTFADVVEIKKVSD----KNLSIH--LSDGRIYEHFDHVIYCVGRSPDTE--- 278

Query: 312 GQLDLHS------DGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE 365
             L L        + YI+       TSV  ++A GD    K  + +       +   E  
Sbjct: 279 -NLKLEKLNVETNNNYIVVD-ENQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERY 336

Query: 366 HYLQEIGSQE 375
              +E  +++
Sbjct: 337 LNKKENVTED 346

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* Length = 463

 Score = 69.8 bits (172), Expect = 3e-13
 Identities = 44/206 (21%), Positives = 86/206 (41%), Gaps = 41/206 (19%)

Query: 157 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVI 211
           + + + AD +++ATG      + PG++     GI++    DG       P    K +A+I
Sbjct: 125 EGQRLSADHIVIATGGRPIVPRLPGAE----LGITS----DGFFALQQQP----KRVAII 172

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSF-R------ASKIMQNRALTNPKIDVIWNSVV 264
           G G   +E A  L  +GS+V ++   D          ++ + +   +    I+      V
Sbjct: 173 GAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAE--NMHAQGIETHLEFAV 230

Query: 265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----LHSD 319
                   ++   G  +      ++       + +A+G  P T+  D  L+     + S+
Sbjct: 231 AAL-----ERDAQGTTLVAQDGTRLEG--FDSVIWAVGRAPNTR--DLGLEAAGIEVQSN 281

Query: 320 GYIITKPGTTHTSVPGVFAAGDVQDK 345
           G + T     +T+VPGV+A GD+  +
Sbjct: 282 GMVPT-DAYQNTNVPGVYALGDITGR 306

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456

 Score = 68.7 bits (169), Expect = 7e-13
 Identities = 72/357 (20%), Positives = 125/357 (35%), Gaps = 83/357 (23%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF--PGFPQGI 117
            V +IG+GPA   AA        +  +++     D   GG L        +  PGF    
Sbjct: 124 SVGVIGAGPAGLAAAEELRAKGYEVHVYD---RYD-RMGGLLV-------YGIPGFK--- 169

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA--DTVIVATGA-VA 174
           L   +++R        G           D              +      V+VATG   A
Sbjct: 170 LEKSVVERRVKLLADAGVIYHPNFEVGRDA---------SLPELRRKHVAVLVATGVYKA 220

Query: 175 KKLQFPGSDA--------F---WNRGI--SACAVCDGAAPIFRDKPLAVIGGGDSAM--- 218
           + ++ PGS          +    N+          +  +     K + V+GGGD+AM   
Sbjct: 221 RDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCV 280

Query: 219 -----EEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPK---IDVIWNSVVLEAYGE 270
                + A       + V  ++RRD  R +     R + + +   ++ IW +      G+
Sbjct: 281 RTAIRQGA-------TSVKCLYRRD--RKNMPGSQREVAHAEEEGVEFIWQAAPEGFTGD 331

Query: 271 GDKKVLGGLKVK---NLVTGQVSDLKVSG---------LFFAIG---HEPATKFVDGQLD 315
                +  +++       TG+ +   + G         +  A+G    +    F + +L 
Sbjct: 332 TVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELK 391

Query: 316 LHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQA---VTAAGTGCMAALEAEHYLQ 369
           +   G ++    T  T++ GVFAAGD+     R A   V A   G  AA     Y +
Sbjct: 392 VTRWGTLLVDHRTKMTNMDGVFAAGDIV----RGASLVVWAIRDGRDAAEGIHAYAK 444

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} Length = 492

 Score = 68.4 bits (168), Expect = 8e-13
 Identities = 66/354 (18%), Positives = 107/354 (30%), Gaps = 99/354 (27%)

Query: 48  SNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT--- 104
           SNAM   + +   V IIG+G A   A   A +   K +L EG         G   TT   
Sbjct: 1   SNAM---KVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEG---------GAYGTTCAR 48

Query: 105 ----------------SDVENFPGFPQGILGGD-------LMDRCRNQSLRFGTQIFTET 141
                                   F  GI           +M R + +  RF   +    
Sbjct: 49  VGCMPSKLLIAAADASYHASQTDLF--GIQVDRISVNGKAVMKRIQTERDRFVGFV---- 102

Query: 142 VSKVDFKSRPFKV--------FTDSKSVL--------ADTVIVATGAVAKKLQFPGSDAF 185
           V  V+      +         F D  ++         A  +++ATG+           A 
Sbjct: 103 VESVESF---DEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRPNYP--EFLAAA 157

Query: 186 WNRGISACAVCDGA-----APIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
            +R ++     D        P    K +AV G G   +E    L++ G  V +  R  S 
Sbjct: 158 GSRLLTN----DNLFELNDLP----KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSV 209

Query: 241 RA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294
                    +  + +     +      + V+    + D   +    +    +GQ +    
Sbjct: 210 ANLQDEEMKRYAE-KTFNE-EFYFDAKARVISTIEKEDAVEV----IYFDKSGQKTTESF 263

Query: 295 SGLFFAIGHEPATKFVDG----QLDLHSD--GYIITKPGTTHTSVPGVFAAGDV 342
             +  A G +     VD        +  D     +    T  TSV  +F AGD 
Sbjct: 264 QYVLAATGRKA---NVDKLGLENTSIELDKKNSPLFDELTLQTSVDHIFVAGDA 314

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* Length = 450

 Score = 67.9 bits (167), Expect = 1e-12
 Identities = 44/209 (21%), Positives = 80/209 (38%), Gaps = 47/209 (22%)

Query: 157 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVI 211
           + +++ AD +++ATG        PG +     GI +    DG       P    + +AV+
Sbjct: 126 NGETITADHILIATGGRPSHPDIPGVE----YGIDS----DGFFALPALP----ERVAVV 173

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSF----------RASKIMQNRALTNPKIDVIWN 261
           G G   +E    +   G+K ++    D+              ++M           +  N
Sbjct: 174 GAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAE-----GPQLHTN 228

Query: 262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----L 316
           ++        D    G L ++ L  G+     V  L +AIG EPA    +  L+      
Sbjct: 229 AIPKAVVKNTD----GSLTLE-LEDGRS--ETVDCLIWAIGREPAND--NINLEAAGVKT 279

Query: 317 HSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
           +  GYI+      +T++ G++A GD    
Sbjct: 280 NEKGYIVVD-KYQNTNIEGIYAVGDNTGA 307

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* Length = 523

 Score = 67.3 bits (165), Expect = 2e-12
 Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 28/204 (13%)

Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP---LA 209
            V    K   A  +I+A GA    L  PG +    +G+               +P   + 
Sbjct: 165 TVEAAGKVFKAKNLILAVGAGPGTLDVPGVN---AKGVF---DHATLVEELDYEPGSTVV 218

Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSV 263
           V+GG  +A+E   F    G +  ++ R +             +    +    +++I  S 
Sbjct: 219 VVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVL-DRMKEQGMEIISGSN 277

Query: 264 VLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----LHS 318
           V     + + +V     V  +       ++   +F  +G +P +             L  
Sbjct: 278 VTRIEEDANGRV---QAVVAMTPNGEMRIETDFVFLGLGEQPRS---AELAKILGLDLGP 331

Query: 319 DGYIITKPGTTHTSVPGVFAAGDV 342
            G ++       TSVP V+A GD+
Sbjct: 332 KGEVLVN-EYLQTSVPNVYAVGDL 354

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} Length = 484

 Score = 67.2 bits (165), Expect = 2e-12
 Identities = 43/212 (20%), Positives = 75/212 (35%), Gaps = 45/212 (21%)

Query: 153 KVFTDSKSVLADTVIVATGAVAKKL-QFPGSDAFWNRGISACAVCDGA-----APIFRDK 206
           ++    + + A+ +++ATGA         GSD      +++    +        P    K
Sbjct: 145 ELSVTGERISAEKILIATGAKIVSNSAIKGSD----LCLTS----NEIFDLEKLP----K 192

Query: 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF-R------ASKIMQNRALTNPKIDVI 259
            + ++GGG   +E AN     G K  ++HR D   R         +     +    I +I
Sbjct: 193 SIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDA--MVAKGISII 250

Query: 260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSD 319
           + + V +      +       V  L  GQ   +    +  A G  P T      L L   
Sbjct: 251 YEATVSQV-----QSTENCYNVV-LTNGQT--ICADRVMLATGRVPNTT----GLGLERA 298

Query: 320 GYIITKPGT------THTSVPGVFAAGDVQDK 345
           G  + + G         T+V  ++A GDV   
Sbjct: 299 GVKVNEFGAVVVDEKMTTNVSHIWAVGDVTGH 330

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} Length = 463

 Score = 67.1 bits (165), Expect = 2e-12
 Identities = 44/214 (20%), Positives = 79/214 (36%), Gaps = 48/214 (22%)

Query: 153 KVFTDSKSVLADTVIVATGAVAKKL-QFPGSDAFWNRGISACAVCDGA-----APIFRDK 206
           K+    K+V A+ +++A G         PG +      I++    + A      P    +
Sbjct: 124 KLLASGKTVTAERIVIAVGGHPSPHDALPGHE----LCITS----NEAFDLPALP----E 171

Query: 207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF----------RASKIMQNRALTNPKI 256
            + + GGG  A+E AN     G K  +I+R                   M+ +      I
Sbjct: 172 SILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEK-----GI 226

Query: 257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD- 315
            ++   ++     + D     G +V   +     ++    +  A+G  P T      L+ 
Sbjct: 227 RILCEDIIQSVSADAD-----GRRVATTMKH--GEIVADQVMLALGRMPNTN--GLGLEA 277

Query: 316 ----LHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
                +  G II    +  TS PG++A GDV D+
Sbjct: 278 AGVRTNELGAIIVDAFSR-TSTPGIYALGDVTDR 310

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* Length = 729

 Score = 67.4 bits (165), Expect = 3e-12
 Identities = 47/316 (14%), Positives = 84/316 (26%), Gaps = 62/316 (19%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---ENFPGFP 114
           K  V I+G+GP+   AA     +     L +     +   GG L   + +     +    
Sbjct: 389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTD---TAE-KIGGHLNQVAALPGLGEWSYHR 444

Query: 115 QGILG--GDLMDRCRNQSLRFGTQIFT-ETVSKVDFKSRPFKVFTDSKSVLADTVIVATG 171
                    L+ + +   L  G +  T + V +                   D VI+ATG
Sbjct: 445 DYRETQITKLLKKNKESQLALGQKPMTADDVLQYGA----------------DKVIIATG 488

Query: 172 AVAKKLQF--------PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS--AMEEA 221
           A               PG+DA     ++   V DG   I   K + ++       A   A
Sbjct: 489 ARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKI--GKRVVILNADTYFMAPSLA 546

Query: 222 NFLTKYGSKVYIIHRRDSFRASKIMQNRA-----LTNPKIDVIWNSVVLEAYGEG----- 271
             L   G +V I+                     L    ++ + +               
Sbjct: 547 EKLATAGHEVTIVSGVHLANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGRMEIYN 606

Query: 272 ------DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITK 325
                  +   G              ++   L    G        +   +L +       
Sbjct: 607 IWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN---ELKARE----- 658

Query: 326 PGTTHTSVPGVFAAGD 341
                  + G++  GD
Sbjct: 659 SEWAENDIKGIYLIGD 674

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671

 Score = 67.0 bits (164), Expect = 3e-12
 Identities = 36/179 (20%), Positives = 62/179 (34%), Gaps = 36/179 (20%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---ENFPGFP 114
           K  + ++G+GPA    AI AA    +  LF+   A+    GGQ      +   E F    
Sbjct: 373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFD---AHS-EIGGQFNIAKQIPGKEEFYETL 428

Query: 115 QGILGGDLMDRCRNQ--SLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
           +                +L+    +  + +                     D  I+A+G 
Sbjct: 429 R-----YYRRMIEVTGVTLKLNHTVTADQLQA------------------FDETILASGI 465

Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKV 231
           V +     G D    + +S   V    AP+     +A+IG G    + A +L++ G   
Sbjct: 466 VPRTPPIDGIDH--PKVLSYLDVLRDKAPVGNK--VAIIGCGGIGFDTAMYLSQPGEST 520

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* Length = 483

 Score = 66.4 bits (163), Expect = 4e-12
 Identities = 44/202 (21%), Positives = 78/202 (38%), Gaps = 37/202 (18%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIG 212
            +++ A T ++A G   +    PG+  +   GI++    D        P        V+G
Sbjct: 146 ERTITAQTFVIAVGGRPRYPDIPGAVEY---GITS----DDLFSLDREP----GKTLVVG 194

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRR------DSFRASKIMQNRALTNPKIDVIWNSVVLE 266
            G   +E A FL   G +  ++ R       D   A  +  +  +    I  +  +V L 
Sbjct: 195 AGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAAS--MEERGIPFLRKTVPLS 252

Query: 267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDL------HSDG 320
              + D K+L  +K KN+ TG+ S+     + +AIG +         L+L          
Sbjct: 253 VEKQDDGKLL--VKYKNVETGEESEDVYDTVLWAIGRKGLVD----DLNLPNAGVTVQKD 306

Query: 321 YIITKPGTTHTSVPGVFAAGDV 342
            I        T+V  ++A GD+
Sbjct: 307 KIPVD-SQEATNVANIYAVGDI 327

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} Length = 452

 Score = 65.2 bits (160), Expect = 1e-11
 Identities = 49/236 (20%), Positives = 87/236 (36%), Gaps = 35/236 (14%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
             G  +     V+ VD +++  KV    T+ +   A D +I+ TG+       PG D+  
Sbjct: 70  NLGANVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDS-- 127

Query: 187 NRGISACAVCDGAAPIFRD----KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA 242
              +  C   + A  +F +    K + +IG G    E A   +     V +I   +    
Sbjct: 128 -SRVYLCKNYNDAKKLFEEAPKAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY 186

Query: 243 -------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD---L 292
                  + I+         ++++  S V       D+           +  +  D   +
Sbjct: 187 KYFDKEFTDILAK-DYEAHGVNLVLGSKVAAFEEVDDE-----------IITKTLDGKEI 234

Query: 293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
           K       IG  P T+ + G++ +  +G IIT     H+S   +FAAGD     Y 
Sbjct: 235 KSDIAILCIGFRPNTELLKGKVAMLDNGAIITDE-YMHSSNRDIFAAGDSAAVHYN 289

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} Length = 452

 Score = 64.8 bits (159), Expect = 1e-11
 Identities = 48/225 (21%), Positives = 80/225 (35%), Gaps = 28/225 (12%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF-TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFWNR 188
           R   Q+     V  +D +++       + +   + D +I+ATGA     Q  GS      
Sbjct: 70  RQKIQLLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQT---E 126

Query: 189 GISACAVCDGAAPIFRD----KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-- 242
            +       GA          + +AVIG G   ME  +FL K    V++    ++     
Sbjct: 127 KLLKYKFLSGALAAVPLLENSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKY 186

Query: 243 -----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL 297
                   +Q  +L    +   +   VL      +  VL         T +  ++     
Sbjct: 187 FDKEMVAEVQK-SLEKQAVIFHFEETVLGIEETANGIVL--------ETSE-QEISCDSG 236

Query: 298 FFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
            FA+   P   ++D ++  + D  I        TSVP VFA GD 
Sbjct: 237 IFALNLHPQLAYLDKKIQRNLDQTIAVDA-YLQTSVPNVFAIGDC 280

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... Length = 478

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 51/217 (23%), Positives = 84/217 (38%), Gaps = 46/217 (21%)

Query: 154 VFTDSKSVLADTVIVATGA---VAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRD 205
           +    K   A  +++ATG       + Q PG+      GI++    DG       P    
Sbjct: 140 IEVSGKKYTAPHILIATGGMPSTPHESQIPGAS----LGITS----DGFFQLEELP---- 187

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF----------RASKIMQNRALTNPK 255
               ++G G  A+E A  L+  GSK  ++ R D              ++ ++N       
Sbjct: 188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENA-----G 242

Query: 256 IDVIWNSVV--LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ 313
           ++V+  S V  ++    G +  +       L    +    V  L +AIG  P TK  D  
Sbjct: 243 VEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMI-PDVDCLLWAIGRVPNTK--DLS 299

Query: 314 LD-----LHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
           L+         G+II      +T+V G++A GDV  K
Sbjct: 300 LNKLGIQTDDKGHIIV-DEFQNTNVKGIYAVGDVCGK 335

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* Length = 490

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 42/224 (18%), Positives = 81/224 (36%), Gaps = 50/224 (22%)

Query: 145 VDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA----- 199
           V  +          +++  + +++ATG+  + L   G D      I++    + A     
Sbjct: 134 VLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDD----LCITS----NEAFYLDE 185

Query: 200 APIFRDKPLAVIGGGDSAMEEANF---LTKYGSKVYIIHRRDSF----------RASKIM 246
           AP    K    +GGG  ++E A         G +V + +R D            + ++ +
Sbjct: 186 AP----KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQL 241

Query: 247 QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA 306
           +        I+V  +    +     D    G   V    +G         +  AIG  P 
Sbjct: 242 RAN-----GINVRTHENPAKVTKNAD----GTRHVV-FESGAE--ADYDVVMLAIGRVPR 289

Query: 307 TKFVDGQLD-----LHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
           ++    QL+     +  +G I      + T+V  ++A GDV D+
Sbjct: 290 SQ--TLQLEKAGVEVAKNGAIKV-DAYSKTNVDNIYAIGDVTDR 330

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* Length = 495

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 49/221 (22%), Positives = 85/221 (38%), Gaps = 44/221 (19%)

Query: 145 VDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA----- 199
           V  +          + + AD +++ATG+  +    PG +      IS+    + A     
Sbjct: 138 VVVRETADPKSAVKERLQADHILLATGSWPQMPAIPGIE----HCISS----NEAFYLPE 189

Query: 200 APIFRDKPLAVIGGGDSAMEEANF---LTKYGSKVYIIHRRDSF-R------ASKIMQNR 249
            P    + +  +GGG  ++E A         G KV + +R +   R        ++ +  
Sbjct: 190 PP----RRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETIREEVTKQ- 244

Query: 250 ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF 309
            LT   I+++ N    +     D    G   V    +G+   L V  +  AIG  P T  
Sbjct: 245 -LTANGIEIMTNENPAKVSLNTD----GSKHVT-FESGKT--LDVDVVMMAIGRIPRTN- 295

Query: 310 VDGQLD-----LHSDGYIITKPGTTHTSVPGVFAAGDVQDK 345
            D QL      L   G +      + T+VP ++A GD+ D+
Sbjct: 296 -DLQLGNVGVKLTPKGGVQV-DEFSRTNVPNIYAIGDITDR 334

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* Length = 488

 Score = 62.2 bits (152), Expect = 8e-11
 Identities = 39/201 (19%), Positives = 76/201 (37%), Gaps = 34/201 (16%)

Query: 163 ADTVIVATGAVAKK-LQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIGGGDS 216
           A+ +++ATG   +   Q  G+  +   GI++    D       +P        V+G    
Sbjct: 148 AEHIVIATGGRPRYPTQVKGALEY---GITS----DDIFWLKESP----GKTLVVGASYV 196

Query: 217 AMEEANFLTKYGSKVYIIHRRDSFR------ASKIMQNRALTNPKIDVIWNSVVLEAYGE 270
           A+E A FLT  G    ++ R    R      +S + ++  + +     +   V       
Sbjct: 197 ALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEH--MESHGTQFLKGCVPSHIKKL 254

Query: 271 GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----LHSDGYIITK 325
              ++   +  ++  +G+        + +AIG  P T+     L+      +     I  
Sbjct: 255 PTNQLQ--VTWEDHASGKEDTGTFDTVLWAIGRVPETR--TLNLEKAGISTNPKNQKIIV 310

Query: 326 PGTTHTSVPGVFAAGDVQDKK 346
                TSVP ++A GDV + +
Sbjct: 311 DAQEATSVPHIYAIGDVAEGR 331

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} Length = 479

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 45/201 (22%), Positives = 79/201 (39%), Gaps = 41/201 (20%)

Query: 163 ADTVIVATGAVAKKLQ-FPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIGGGDS 216
           A+ ++VATG  A   +  PG +     G  +    DG       P    K + V+G G  
Sbjct: 149 ANHILVATGGKAIFPENIPGFE----LGTDS----DGFFRLEEQP----KKVVVVGAGYI 196

Query: 217 AMEEANFLTKYGSKVYIIHRRDSF-R------ASKIMQNRALTNPKIDVIWNSVVLEAYG 269
            +E A      GS+ +++ R ++  R       + I  +       I+V   S +++   
Sbjct: 197 GIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDH--YVKEGINVHKLSKIVKV-- 252

Query: 270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----LHSDGYIIT 324
              +K +   K+K  +    S   V  L + IG +          +     L+S   II 
Sbjct: 253 ---EKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHLGM---GSENVGIKLNSHDQIIA 306

Query: 325 KPGTTHTSVPGVFAAGDVQDK 345
                +T+VP +++ GDV  K
Sbjct: 307 -DEYQNTNVPNIYSLGDVVGK 326

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* Length = 519

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 46/202 (22%), Positives = 81/202 (40%), Gaps = 34/202 (16%)

Query: 163 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIGGGDSA 217
           A+  ++ATG   + L  PG   +    IS+    D        P        V+G    A
Sbjct: 174 AERFLIATGERPRYLGIPGDKEY---CISS----DDLFSLPYCP----GKTLVVGASYVA 222

Query: 218 MEEANFLTKYGSKVYIIHR----R--DSFRASKIMQNRALTNPKIDVIWNSVV--LEAYG 269
           +E A FL   G  V ++ R    R  D   A+KI ++  +    I  I   V   +E   
Sbjct: 223 LECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEH--MEEHGIKFIRQFVPIKVEQIE 280

Query: 270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK-----FVDGQLDLHSDGYIIT 324
            G    L  +  ++  + ++ + + + +  AIG +  T+      V  +++    G I  
Sbjct: 281 AGTPGRL-RVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKIN-EKTGKIPV 338

Query: 325 KPGTTHTSVPGVFAAGDVQDKK 346
                 T+VP ++A GD+ + K
Sbjct: 339 -TDEEQTNVPYIYAIGDILEDK 359

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* Length = 598

 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 46/201 (22%), Positives = 73/201 (36%), Gaps = 37/201 (18%)

Query: 163 ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIGGGDSA 217
            + +I+ATG   K  + PG+  +   GI++    D        P        VIG    A
Sbjct: 250 GNKIILATGERPKYPEIPGAVEY---GITS----DDLFSLPYFP----GKTLVIGASYVA 298

Query: 218 MEEANFLTKYGSKVYIIHRR------DSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEG 271
           +E A FL   G  V ++ R       D   A K+     + N  +      V  E     
Sbjct: 299 LECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDY--MENHGVKFAKLCVPDEIKQLK 356

Query: 272 DKKVL----GGLKVK-NLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-----LHSDGY 321
                    G L VK +   G+  + +   + FA+G EP         +     L  +G 
Sbjct: 357 VVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS--KVLCETVGVKLDKNGR 414

Query: 322 IITKPGTTHTSVPGVFAAGDV 342
           ++       T+V  V+A GD+
Sbjct: 415 VVCT-DDEQTTVSNVYAIGDI 434

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} Length = 385

 Score = 60.3 bits (147), Expect = 2e-10
 Identities = 42/240 (17%), Positives = 81/240 (33%), Gaps = 59/240 (24%)

Query: 140 ETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSD---AFWN----RGIS 191
           E  + +D  ++   V   S   +  + +I+A+G++A K++ P +D   + ++      I 
Sbjct: 83  EFATSIDPNNK--LVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIK 140

Query: 192 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF-------RASK 244
                             +IGGG   +E A  +   G+   I    +             
Sbjct: 141 DECK--------NKGKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGL 192

Query: 245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE 304
            ++   L    I +  NS   E         +G              ++ S +  A+G +
Sbjct: 193 FLK-DKLDRLGIKIYTNSNFEE---------MG------------DLIRSSCVITAVGVK 230

Query: 305 PATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV---QDKKY-------RQAVTAA 354
           P   F+    ++ S   I+       TS+  ++A GDV     K         +Q   A 
Sbjct: 231 PNLDFIK-DTEIASKRGILVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAG 288

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* Length = 588

 Score = 60.3 bits (147), Expect = 4e-10
 Identities = 47/237 (19%), Positives = 84/237 (35%), Gaps = 36/237 (15%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
           RF   I   + V K++ + +   +    T+     A D +I++ GA       PG +   
Sbjct: 105 RFNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEA- 163

Query: 187 NRGISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
            + +           I         +   VIGGG   +E    L + G +V ++   +  
Sbjct: 164 -KALFTLRNVPDTDRIKAYIDEKKPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQV 222

Query: 241 RA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV--SDL 292
                   +  +    + N  +++++   V      G         V  L +G V  +D+
Sbjct: 223 MPPIDYEMAAYVHE-HMKNHDVELVFEDGVDALEENG--------AVVRLKSGSVIQTDM 273

Query: 293 KVSGLFFAIGHEPATKFVDGQ-LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
            +     AIG +P +    G  L L   G I        TS P ++A GD  + K  
Sbjct: 274 LI----LAIGVQPESSLAKGAGLALGVRGTIKVNE-KFQTSDPHIYAIGDAIEVKDF 325

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} Length = 472

 Score = 59.5 bits (145), Expect = 6e-10
 Identities = 48/231 (20%), Positives = 83/231 (35%), Gaps = 33/231 (14%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
               +   ET    +D  +   ++    T  +  L  D +++A G+ A +    G D   
Sbjct: 78  NKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMD--- 134

Query: 187 NRGISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEA-NFLTKYGSKVYIIHRRDS 239
             G++     D A  +             ++GGG   +E A +    +G    ++   D 
Sbjct: 135 LAGVTPVTNLDEAEFVQHAISAGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQ 194

Query: 240 FRA-------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL 292
                     S+++++  L    + V     V+   GE  K       V  ++T +   L
Sbjct: 195 IMPGFTSKSLSQMLRH-DLEKNDVVVHTGEKVVRLEGENGK-------VARVITDK-RTL 245

Query: 293 KVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +  A G  P T+   D  L+L   G II       TS P +FA GD 
Sbjct: 246 DADLVILAAGVSPNTQLARDAGLELDPRGAIIVDT-RMRTSDPDIFAGGDC 295

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 367

 Score = 58.7 bits (143), Expect = 8e-10
 Identities = 52/237 (21%), Positives = 81/237 (34%), Gaps = 48/237 (20%)

Query: 140 ETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD---AFWN----RGISA 192
           E    +D   +   V T+   V  DT+++ATGA A++ Q  G +             I  
Sbjct: 81  EEAKLIDRGRK--VVITEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKE 138

Query: 193 CAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-----FRASKIMQ 247
                            +IGGG   +E A  L + G  V +IHR           S +++
Sbjct: 139 SIE--------NSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIK 190

Query: 248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT 307
              L    +    NS +LEA  EG   +     ++         +K+     AIG  P  
Sbjct: 191 -DMLEETGVKFFLNSELLEANEEG--VLTNSGFIE-------GKVKI----CAIGIVPNV 236

Query: 308 KFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK----------YRQAVTAA 354
                +  +H+   I+       TS   V+A GD  +              QA   A
Sbjct: 237 DLAR-RSGIHTGRGILIDD-NFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA 291

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* Length = 447

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 55/198 (27%), Positives = 77/198 (38%), Gaps = 27/198 (13%)

Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRD------KPLAVIGGGDSA 217
           D +I++ GAV  +L  PG D      I        A  + +         + VIG G   
Sbjct: 105 DKLIISPGAVPFELDIPGKDL---DNIYLMRGRQWAIKLKQKTVDPEVNNVVVIGSGYIG 161

Query: 218 MEEANFLTKYGSKVYIIHRRDSFRA-------SKIMQNRALTNPKIDVIWNSVVLEAYGE 270
           +E A    K G KV +I   D           + ++    +    I +     V     E
Sbjct: 162 IEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTE-EMEANNITIATGETVERY--E 218

Query: 271 GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH 330
           GD +V   +  KN      +DL V     A+G  P T ++ G L+LH +G I T      
Sbjct: 219 GDGRVQKVVTDKNAYD---ADLVV----VAVGVRPNTAWLKGTLELHPNGLIKTDE-YMR 270

Query: 331 TSVPGVFAAGDVQDKKYR 348
           TS P VFA GD    KY 
Sbjct: 271 TSEPDVFAVGDATLIKYN 288

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* Length = 565

 Score = 57.2 bits (139), Expect = 4e-09
 Identities = 48/240 (20%), Positives = 82/240 (34%), Gaps = 34/240 (14%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
           RF  ++  +  V  +D  ++   V      S+   + DT++++ GA       PG D   
Sbjct: 70  RFNVEVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVD--- 126

Query: 187 NRGISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
           N    +         I +       +   V+GGG   +E    L   G K  ++   D  
Sbjct: 127 NPLTHSLRNIPDMDRILQTIQMNNVEHATVVGGGFIGLEMMESLHHLGIKTTLLELADQV 186

Query: 241 RA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL----GGLKVKNLVTGQVS 290
                   +      A+ +  +D+   + + E   +    V     G       + G +S
Sbjct: 187 MTPVDREMAGFAHQ-AIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS 245

Query: 291 DLKVSG-------LFFAIGHEPATKF-VDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
               +G       L  AIG  P T+   D  L +   G I        TS P ++A GD 
Sbjct: 246 LTLSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNA-MMQTSDPAIYAVGDA 304

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* Length = 480

 Score = 55.6 bits (135), Expect = 1e-08
 Identities = 48/229 (20%), Positives = 88/229 (38%), Gaps = 32/229 (13%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
           ++G        V+KVD + +        T      + D +++ATG      ++ G D   
Sbjct: 105 KYGIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDL-- 162

Query: 187 NRGISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
            +G+        A  I +       + + +IGGG   +E A    + G KV +I R D  
Sbjct: 163 -QGVHLLKTIPDAERILKTLETNKVEDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHI 221

Query: 241 RA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294
                   ++ +         I+++ N  V    G          +V+ + T +    K 
Sbjct: 222 GTIYDGDMAEYIYK-EADKHHIEILTNENVKAFKGNE--------RVEAVETDK-GTYKA 271

Query: 295 SGLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
             +  ++G +P T F++G  +  +  G I        T+V  V+AAGD 
Sbjct: 272 DLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNA-YMQTNVQDVYAAGDC 319

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} Length = 449

 Score = 55.2 bits (134), Expect = 1e-08
 Identities = 46/228 (20%), Positives = 83/228 (36%), Gaps = 34/228 (14%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF-TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFWNR 188
           + G  +     V +VD      +V     +     D ++ A GA  +     G +    +
Sbjct: 71  KRGIDLHLNAEVIEVDTGYV--RVRENGGEKSYEWDYLVFANGASPQVPAIEGVNL---K 125

Query: 189 GISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA 242
           G+    +   A  I         + + +IGGG   +E A      G  V +I R +    
Sbjct: 126 GVFTADLPPDALAIREYMEKYKVENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLR 185

Query: 243 -------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS 295
                  + I++   L    +++    + ++  GE         +V+ +VT    + K  
Sbjct: 186 RSFDKEVTDILEE-KLKK-HVNLRLQEITMKIEGEE--------RVEKVVTDA-GEYKAE 234

Query: 296 GLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
            +  A G +P  +      + +   G I T      TSV  V+AAGDV
Sbjct: 235 LVILATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSVENVYAAGDV 281

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* Length = 447

 Score = 53.8 bits (129), Expect = 3e-08
 Identities = 46/325 (14%), Positives = 79/325 (24%), Gaps = 81/325 (24%)

Query: 60  KVCIIGSGPAAHTAAIY--AARAELKPILFE------G-WMANDIAPGGQ---------- 100
           K+ IIG+GP+    A    A +A  +  LFE      G W                    
Sbjct: 8   KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILT 67

Query: 101 --------------------LTTTSDVE-----NFPGFPQGIL----GGDLMDRCRNQSL 131
                               L T + +E     +   F    L       + +  R  + 
Sbjct: 68  TEPIVGPAALPVYPSPLYRDLQTNTPIELMGYCDQS-FKPQTLQFPHRHTIQEYQRIYAQ 126

Query: 132 RFGTQI-FTETVSKVDFKSRPFKVFTDS-------KSVLADTVIVATG--AVAKKLQFPG 181
                I     V  ++ K   + V              + D V +  G   V       G
Sbjct: 127 PLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISKDIFDAVSICNGHYEVPYIPNIKG 186

Query: 182 SDAFWNR--GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS 239
            D +     G    +       +F  + + V+GG  SA +    LT              
Sbjct: 187 LDEYAKAVPGSVLHSSLFREPELFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGG 246

Query: 240 FRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFF 299
                    +     K D     + L+                    G      +  + +
Sbjct: 247 GDIQNESLQQVPEITKFDPTTREIYLK--------------------GGKVLSNIDRVIY 286

Query: 300 AIGHEPATKFVDGQLDLHSDGYIIT 324
             G+  +  F         +  +I 
Sbjct: 287 CTGYLYSVPFPSLAKLKSPETKLID 311

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* Length = 467

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 48/198 (24%), Positives = 73/198 (36%), Gaps = 34/198 (17%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGI--SACAVCDGAAPIFRDKPLAVIGGGD 215
            + V+ D  +VATGA       PG           S  A+     P    + LAVIG   
Sbjct: 134 ERVVMFDRCLVATGASPAVPPIPGLK---ESPYWTSTEALASDTIP----ERLAVIGSSV 186

Query: 216 SAMEEANFLTKYGSKVYIIHRRDSF-----RASKIMQNRALTNPKIDVIWNSVVLEAYGE 270
            A+E A    + GSKV ++ R   F        + +   A     I+V+ ++   +    
Sbjct: 187 VALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVT-AAFRAEGIEVLEHTQASQVAHM 245

Query: 271 GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTH 330
             + V         +T    +L+   L  A G  P T+     L L + G  +   G   
Sbjct: 246 DGEFV---------LTTTHGELRADKLLVATGRTPNTR----SLALDAAGVTVNAQGAIV 292

Query: 331 ------TSVPGVFAAGDV 342
                 TS P ++AAGD 
Sbjct: 293 IDQGMRTSNPNIYAAGDC 310

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* Length = 463

 Score = 51.2 bits (122), Expect = 3e-07
 Identities = 34/245 (13%), Positives = 68/245 (27%), Gaps = 55/245 (22%)

Query: 61  VCIIGSGP-----AAHTAAIYAARAELKPILFE-----GWMANDIAPG--------GQLT 102
           +  +G GP     A        A+  L+ +  +      W  N +             L 
Sbjct: 33  LIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLV 92

Query: 103 TTSD-----------VENFPGFPQGILGGDLMDR------CRNQSLRFGTQI-FTETVSK 144
           +  +            ++        LG     R       R  +  F  Q  + E V +
Sbjct: 93  SLRNPTSPYSFVNYLHKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLR 152

Query: 145 V-----DFKSRPFKVFTDSKS-----VLADTVIVATGAVAKKLQFPGSDAFWNRGISACA 194
           +       +    +V + +            ++V+ G   +  Q   +     R      
Sbjct: 153 IEPMLSAGQVEALRVISRNADGEELVRTTRALVVSPGGTPRIPQVFRALKGDGRVFHHSQ 212

Query: 195 VCDGAAPI----FRDKPLAVIGGGDSAME--EANFLTKYGSKVYIIHRRDSFRASKIMQN 248
             +  A       +   +A+IGGG SA E       +    +  +I R  + +      +
Sbjct: 213 YLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKP---ADD 269

Query: 249 RALTN 253
               N
Sbjct: 270 SPFVN 274

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 Length = 499

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 41/202 (20%), Positives = 71/202 (35%), Gaps = 40/202 (19%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIG 212
           +    AD V+VATGA  + L  P +     R ++              P      L V+G
Sbjct: 140 TSEHEADVVLVATGASPRIL--PSAQPDGERILTW----RQLYDLDALP----DHLIVVG 189

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSF------RASKIMQNRALTNPKIDVIWNSVVLE 266
            G +  E  +  T+ G  V ++  +D         A+ +++  +     + +  N+    
Sbjct: 190 SGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLE-ESFAERGVRLFKNARAAS 248

Query: 267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKP 326
               G      G+ V  +  G+   ++ S     IG  P      G L L   G  + + 
Sbjct: 249 VTRTGA-----GVLVT-MTDGRT--VEGSHALMTIGSVP---NTSG-LGLERVGIQLGRG 296

Query: 327 GTTH------TSVPGVFAAGDV 342
                     T   G++AAGD 
Sbjct: 297 NYLTVDRVSRTLATGIYAAGDC 318

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} Length = 466

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 43/199 (21%), Positives = 68/199 (34%), Gaps = 29/199 (14%)

Query: 157 DSKSVLADTVIVATGAVAKKLQFPGSDAFWNR-GISACAVCDGAAPIFRDKPLAVIGGGD 215
                    +I+A+GA   KL+ PG +       I          P    + + +IG G 
Sbjct: 127 KEIEAETRYMIIASGAETAKLRLPGVEYCLTSDDIFGYKTSFRKLP----QDMVIIGAGY 182

Query: 216 SAMEEANFLTKYGSKVYIIHRRDSFRA-------SKIMQNRALTNPKIDVIWNSVVLEAY 268
             +E A+     G + +II   D              +    L   K+++ +NS V E  
Sbjct: 183 IGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLL-SIL---KLNIKFNSPVTEVK 238

Query: 269 GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPG- 327
              D +       K+   G    +  + +  A G  P              G  I+K G 
Sbjct: 239 KIKDDEYEVIYSTKD---GSKKSIFTNSVVLAAGRRPVIP-----EGAREIGLSISKTGI 290

Query: 328 ----TTHTSVPGVFAAGDV 342
               T  T++P VFA GD 
Sbjct: 291 VVDETMKTNIPNVFATGDA 309

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* Length = 464

 Score = 50.6 bits (122), Expect = 4e-07
 Identities = 43/197 (21%), Positives = 69/197 (35%), Gaps = 28/197 (14%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA 217
           ++SV  D  I+ATG+  + +  PG+    N       +     P    K + + G G   
Sbjct: 130 TESVTFDNAIIATGSSTRLV--PGTSLSANVVTYEEQILSRELP----KSIIIAGAGAIG 183

Query: 218 MEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEG 271
           ME    L  YG  V I+              SK ++ +      + ++  + V      G
Sbjct: 184 MEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIE-KQFKKLGVTILTATKVESIADGG 242

Query: 272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG------QLDLHSDGYIITK 325
                  + V     G   +LK   +  AIG  P    V+G       + L     I   
Sbjct: 243 S-----QVTVTVTKDGVAQELKAEKVLQAIGFAP---NVEGYGLDKAGVALTDRKAIGVD 294

Query: 326 PGTTHTSVPGVFAAGDV 342
                T+V  ++A GDV
Sbjct: 295 -DYMRTNVGHIYAIGDV 310

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456

 Score = 50.2 bits (120), Expect = 5e-07
 Identities = 72/411 (17%), Positives = 118/411 (28%), Gaps = 143/411 (34%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI-------APGGQLTTTSDVENFPG 112
            + I+GSGP+A     +AA + LK       +   +        P G +   S V   P 
Sbjct: 5   YIAIVGSGPSA----FFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR--SGV--APD 56

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-------SKSVLA-- 163
            P        +     Q        F +T      +   F+ F +           L+  
Sbjct: 57  HP-------KIKSISKQ--------FEKT-----AEDPRFRFFGNVVVGEHVQPGELSER 96

Query: 164 -DTVIVATGAVA-KKLQFPGSDAFWNRGISA-------CAVCDGAA--PIFRDKPLAVIG 212
            D VI A GA + + L  PG D      I+A        A        P        VIG
Sbjct: 97  YDAVIYAVGAQSDRMLNIPGEDL--PGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIG 154

Query: 213 GGDSAMEEANFLTKYGS---------------------KVYIIHRRDSFRAS-KIMQNRA 250
            G+ A++ A  L                          +V I+ RR   +A+   ++ R 
Sbjct: 155 NGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRE 214

Query: 251 LTN-PKIDVIWNSVVLEAYGEGD------------------------------------- 272
           L +   +DV+ +   L+   + D                                     
Sbjct: 215 LADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTS 274

Query: 273 -KKVLGGLKVKNLV------------------TGQVSDLKVSGLFFAIGHEPATKFVDGQ 313
             ++ G  KV+ +V                  TG+  +L    +  ++G+        G 
Sbjct: 275 PIEIKGKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGYRGVP--TPG- 331

Query: 314 LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA 364
           L        I   G      P  +  G ++    R      GT    A + 
Sbjct: 332 LPFDDQSGTIPNVGGRINGSPNEYVVGWIK----RGPTGVIGTNKKDAQDT 378

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} Length = 493

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 57/329 (17%), Positives = 98/329 (29%), Gaps = 61/329 (18%)

Query: 52  DEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFP 111
            EI+ +   V IIG GPA   AA+   +  L   L E         GG +      +   
Sbjct: 102 GEIERVVVDVAIIGGGPAGIGAALELQQY-LTVALIE----ERGWLGGDMWLKGIKQEGF 156

Query: 112 GFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKS-----VLADTV 166
                 +  +L+ +     L   T+I+ ET +   F    + +    +      +LA  V
Sbjct: 157 NKDSRKVVEELVGK-----LNENTKIYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRV 211

Query: 167 IVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK 226
           ++ATGA+   + F  +D                                          +
Sbjct: 212 VLATGAIDSTMLFENNDM------------------------------------PGVFRR 235

Query: 227 YGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT 286
             +   +     +      +          ++    +         K+V G  KV+ ++ 
Sbjct: 236 DFALEVMNVWEVAPGRKVAVTGSKADEVIQELERWGIDYVH-IPNVKRVEGNEKVERVID 294

Query: 287 GQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQ 343
               + KV  L FA G  P    +    G+L     GY        H    G++ AG   
Sbjct: 295 MNNHEYKVDALIFADGRRPDINPITQAGGKLR-FRRGYYSPVLDEYHRIKDGIYVAGSAV 353

Query: 344 DKKYRQAVTAAGTGCMAALEAEHYLQEIG 372
             K          G +        L+E G
Sbjct: 354 SIK--PHYANYLEGKLVGAYI---LKEFG 377

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} Length = 415

 Score = 49.5 bits (119), Expect = 1e-06
 Identities = 44/232 (18%), Positives = 75/232 (32%), Gaps = 47/232 (20%)

Query: 131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSDA---FW 186
           ++ G       V  +D  +    V     S +    +I ATG   ++L   G+D      
Sbjct: 82  MKLGA-----EVVSLDPAAH--TVKLGDGSAIEYGKLIWATGGDPRRLSCVGADLAGVHA 134

Query: 187 NRGIS-ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKI 245
            R    A  +          K   VIGGG   +E A  LTK+G  V ++         ++
Sbjct: 135 VRTKEDADRLMAELDA--GAKNAVVIGGGYIGLEAAAVLTKFGVNVTLLE-----ALPRV 187

Query: 246 MQNRALTNPKI-------------DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV--S 290
           +  R      +             D+   + +    G+G       +    +  G V  +
Sbjct: 188 LA-RVAG-EALSEFYQAEHRAHGVDLRTGAAMDCIEGDG-----TKVTGVRMQDGSVIPA 240

Query: 291 DLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
           D+ + G    IG  P    +           +        TS+  V+A GD 
Sbjct: 241 DIVIVG----IGIVPCVGALIS-AGASGGNGVDVD-EFCRTSLTDVYAIGDC 286

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* Length = 431

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 45/235 (19%), Positives = 76/235 (32%), Gaps = 49/235 (20%)

Query: 131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSDAFWNRG 189
           L  GT      V+ ++   +  +V       L  D +++ATG   + L            
Sbjct: 77  LLGGT-----QVTAINRDRQ--QVILSDGRALDYDRLVLATGGRPRPLPVASGAVGKANN 129

Query: 190 IS-------ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA 242
                    A  +         D  L VIGGG   +E A    K    V ++       A
Sbjct: 130 FRYLRTLEDAECIRRQLIA---DNRLVVIGGGYIGLEVAATAIKANMHVTLLD-----TA 181

Query: 243 SKIMQNRALTNPKI-------------DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV 289
           +++++ R    P +             D+   + V       D++ +  +       G  
Sbjct: 182 ARVLE-RVTA-PPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVL---CEDGTR 236

Query: 290 --SDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
             +DL ++G    IG  P  +       L  D  I+       TS P + A GD 
Sbjct: 237 LPADLVIAG----IGLIPNCELASA-AGLQVDNGIVIN-EHMQTSDPLIMAVGDC 285

>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A {Staphylococcus aureus} Length = 438

 Score = 48.2 bits (116), Expect = 2e-06
 Identities = 44/237 (18%), Positives = 86/237 (36%), Gaps = 42/237 (17%)

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVF---TDSKSVLA-DTVIVATGAVAKKLQFPGSDAFW 186
           R    + T   V  ++ + +   V    T+ +   + D +I++ GA A      G +   
Sbjct: 70  RKQITVKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANS---LGFE--- 123

Query: 187 NRGISACAVCDGAAPIFRD------KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF 240
           +         +    I +         + V+G G  ++E    L + G    +IHR D  
Sbjct: 124 SDITFTLRNLEDTDAIDQFIKANQVDKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKI 183

Query: 241 RA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV--SDL 292
                   ++ + +  L   +I    N  +      G++            +G+V   D+
Sbjct: 184 NKLMDADMNQPILD-ELDKREIPYRLNEEINAI--NGNEITF--------KSGKVEHYDM 232

Query: 293 KVSGLFFAIGHEPATKFV-DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR 348
            +      +G  P +KF+    + L   G+I        T+VP ++A GD+    YR
Sbjct: 233 II----EGVGTHPNSKFIESSNIKLDRKGFIPVND-KFETNVPNIYAIGDIATSHYR 284

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 3e-06
 Identities = 62/470 (13%), Positives = 121/470 (25%), Gaps = 142/470 (30%)

Query: 12  LKLRSLLTKARTFFGIV---------TTSSAAAAASFSATTAP-------KISNA----- 50
           LKLR  L + R    ++         T  +     S+              + N      
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197

Query: 51  -MDEIQTLKTKV----CIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS 105
            ++ +Q L  ++           +     I++ +AEL+ +L      N       L    
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC------LLVLL 251

Query: 106 DVENFPGFPQGILGGDLMD-RC------RNQSLRFGTQIFTETVSKVDFKSRPFKVFT-- 156
           +V+N     +     +  +  C      R + +   T   +   +            T  
Sbjct: 252 NVQN----AKAW---NAFNLSCKILLTTRFKQV---TDFLSAATTTHISLDHHSMTLTPD 301

Query: 157 DSKSVLADTVIV---------------ATGAVAKKLQ-FPGSDAFW--------NRGISA 192
           + KS+L   +                     +A+ ++    +   W           I +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 193 CAVCDGAAP-----------IFRDK---PLAVIG------GGDSAMEEANFLTKYG---- 228
               +   P           +F      P  ++            M   N L KY     
Sbjct: 362 SL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 229 ---SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV 285
                   I         K+    AL         +  +++ Y          L      
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYAL---------HRSIVDHYNIPKTFDSDDL------ 464

Query: 286 TGQVSDLKVSGLFFA-IGH--------EPATKFVDGQLDLHSDGYI---ITKPGTTHTSV 333
                   +   F++ IGH        E  T F    LD     ++   I    T   + 
Sbjct: 465 ----IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR---FLEQKIRHDSTAWNAS 517

Query: 334 PGVFAAGDVQD-KKYRQAVTAAGTGCMAALEA-EHYLQEIGSQEDKSESS 381
             +     +Q  K Y+  +          + A   +L +I      S+ +
Sbjct: 518 GSILN--TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} Length = 410

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 49/232 (21%), Positives = 83/232 (35%), Gaps = 49/232 (21%)

Query: 131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSDA---FW 186
           +  G       V+ +D ++R   +  D  + L+ D +++ATG+ A+ +  PGS       
Sbjct: 74  MLTGP-----EVTALDVQTR--TISLDDGTTLSADAIVIATGSRARTMALPGSQLPGVVT 126

Query: 187 NRGIS-ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKI 245
            R       + D          L ++GGG    E A    K G  V I+         ++
Sbjct: 127 LRTYGDVQVLRDSWTS---ATRLLIVGGGLIGCEVATTARKLGLSVTILE-----AGDEL 178

Query: 246 MQNRALTNPKI-------------DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV--S 290
           +  R L   +I              V   + V+     G+ ++   +       G+   +
Sbjct: 179 LV-RVLG-RRIGAWLRGLLTELGVQVELGTGVVGF--SGEGQLEQVM----ASDGRSFVA 230

Query: 291 DLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
           D  +      +G EPA +       L  D  +I       T   GVFA GDV
Sbjct: 231 DSALIC----VGAEPADQLARQ-AGLACDRGVIVD-HCGATLAKGVFAVGDV 276

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} Length = 404

 Score = 47.5 bits (114), Expect = 4e-06
 Identities = 49/223 (21%), Positives = 82/223 (36%), Gaps = 43/223 (19%)

Query: 140 ETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSDA---FWNRGIS-ACA 194
           + +  +D + R  K+   S + +    +++ATGA  + L  P +      + R +  +  
Sbjct: 77  DRMVSIDREGR--KLLLASGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEV 134

Query: 195 VCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNP 254
           +          K + VIG G   +E A      G +V ++       A ++M  R +T P
Sbjct: 135 LRQRMPD---KKHVVVIGAGFIGLEFAATARAKGLEVDVVE-----LAPRVMA-RVVT-P 184

Query: 255 KI-------------DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV--SDLKVSGLFF 299
           +I              + +     E   EGD +V G +    L  G     DL V G   
Sbjct: 185 EISSYFHDRHSGAGIRMHYGVRATEIAAEGD-RVTGVV----LSDGNTLPCDLVVVG--- 236

Query: 300 AIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV 342
            +G  P  +       L +   II       TS P + A GD 
Sbjct: 237 -VGVIPNVEIAAA-AGLPTAAGIIVD-QQLLTSDPHISAIGDC 276

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* Length = 384

 Score = 47.6 bits (114), Expect = 4e-06
 Identities = 53/321 (16%), Positives = 105/321 (32%), Gaps = 78/321 (24%)

Query: 56  TLKTKVCIIGSGPAAHTAA-------------IYAA-------RAELKPILFEGWMANDI 95
           + +  + IIG+G A +  A             +  A       +  L     +   A+ +
Sbjct: 2   SERAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADDGRSYSKPMLSTGFSKNKDADGL 61

Query: 96  APGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVF 155
           A                    +     M    N  +   T      V+ +D   +  +++
Sbjct: 62  A--------------------MAEPGAMAEQLNARILTHT-----RVTGIDPGHQ--RIW 94

Query: 156 TDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIG 212
              + V    +++A GA   ++   G      +    +   A    AA     + + ++G
Sbjct: 95  IGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQAAA--GKRRVLLLG 152

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSF-------RASKIMQNRALTNPKIDVIWNSVVL 265
            G    E AN L+  G ++ ++   +          A+K +Q   L    +      V+ 
Sbjct: 153 AGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQ-AGLEGLGVRFHLGPVLA 211

Query: 266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQL----DLHSDGY 321
                G+     GL+   L  G+V  +    +  A+G  P T     +L     L  +  
Sbjct: 212 SLKKAGE-----GLEAH-LSDGEV--IPCDLVVSAVGLRPRT-----ELAFAAGLAVNRG 258

Query: 322 IITKPGTTHTSVPGVFAAGDV 342
           I+    +  TS   ++A GD 
Sbjct: 259 IVVD-RSLRTSHANIYALGDC 278

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* Length = 965

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 62/328 (18%), Positives = 94/328 (28%), Gaps = 52/328 (15%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V ++G+GPA   AA  A+R+  + +L +         GG L  T+  E   G        
Sbjct: 131 VLVVGAGPAGLAAAREASRSGARVMLLD----ERAEAGGTLLDTAG-EQIDGMDSSAWIE 185

Query: 121 DLMD--------RCRNQSLRFG---------TQIFTETVSKVDFKSRPFKVFTDSKSVLA 163
            +              ++  FG          Q  T  +          +       + A
Sbjct: 186 QVTSELAEAEETTHLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIW---HIRA 242

Query: 164 DTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD-----GAAPIFRDKPLAVIGGGDSAM 218
             V++ATGA  + + F  +D      + A AV       G         +AV    DSA 
Sbjct: 243 KQVVLATGAHERPIVFENNDR--PGIMLAGAVRSYLNRYGVRA---GARIAVATTNDSAY 297

Query: 219 EEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG 278
           E    L   G  V +I  R S  A+            + VI  SVV++     +   L  
Sbjct: 298 ELVRELAATGGVVAVIDARSSISAAAAQAVADG----VQVISGSVVVDTEA-DENGELSA 352

Query: 279 LKVKNL----VTGQVSDLKVSGLFFAIGHEPATKFV-----DGQLDLHSDGYIITKPGTT 329
           + V  L      G     +   L  A G  P              D     ++       
Sbjct: 353 IVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHSQRQGKLDWDTTIHAFVPADAVAN 412

Query: 330 HTSV---PGVFAAGDVQDKKYRQAVTAA 354
                   G                 AA
Sbjct: 413 QHLAGAMTGRLDTASALSTGAATGAAAA 440

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* Length = 493

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 40/244 (16%), Positives = 79/244 (32%), Gaps = 61/244 (25%)

Query: 130 SLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKL---QFPGSDAF 185
           ++  G       V ++D +     V  +  S +  +  ++ATG   + L      G++  
Sbjct: 106 AVLTGK-----KVVQLDVRDN--MVKLNDGSQITYEKCLIATGGTPRSLSAIDRAGAEVK 158

Query: 186 WN----RGIS-ACAVCDGAAPIFRDKPLAVIGGGDSAMEEA----NFLTKYGSKVYIIHR 236
                 R I    ++   +      K + +IGGG    E A          G++V  +  
Sbjct: 159 SRTTLFRKIGDFRSLEKISRE---VKSITIIGGGFLGSELACALGRKARALGTEVIQL-- 213

Query: 237 RDSFRASKIMQNRALTNPKI-------------DVIWNSVVLEAYGEGDKKVLGGLKVKN 283
              F     M  + L    +              V+ N++V        K ++       
Sbjct: 214 ---FPEKGNMG-KILP-EYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLI------K 262

Query: 284 LVTGQV--SDLKVSGLFFAIGHEPATKFVDG---QLDLHSDGYIITKPGTTHTSVPGVFA 338
           L  G+   +D  V+     +G EP  +       ++D    G+ +            ++ 
Sbjct: 263 LKDGRKVETDHIVAA----VGLEPNVELAKTGGLEIDSDFGGFRVNAELQAR---SNIWV 315

Query: 339 AGDV 342
           AGD 
Sbjct: 316 AGDA 319

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 470

 Score = 46.3 bits (111), Expect = 1e-05
 Identities = 49/202 (24%), Positives = 76/202 (37%), Gaps = 35/202 (17%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIG 212
           +  V    +I+ATG+  K L  PG      + +S+     GA      P    K L VIG
Sbjct: 135 NTVVKGKHIIIATGSDVKSL--PGVTIDEKKIVSS----TGALALSEIP----KKLVVIG 184

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLE 266
            G   +E  +   + GS+V ++               K  Q R+L    +     + V+ 
Sbjct: 185 AGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQ-RSLEKQGMKFKLKTKVVG 243

Query: 267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKP 326
               GD   L    V+    G+ + ++   +  + G  P T      L+L   G    K 
Sbjct: 244 VDTSGDGVKL---TVEPSAGGEQTIIEADVVLVSAGRTPFTS----GLNLDKIGVETDKL 296

Query: 327 GTTH------TSVPGVFAAGDV 342
           G         T+V GV+A GDV
Sbjct: 297 GRILVNERFSTNVSGVYAIGDV 318

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} Length = 491

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 48/200 (24%), Positives = 82/200 (41%), Gaps = 29/200 (14%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGI---SACAVCDGAAPIFRDKPLAVIGGG 214
            + + A  V++ATG+    +  PG +  ++      S  A+     P      + V+GGG
Sbjct: 154 EQVLEAKNVVIATGSDVAGI--PGVEVAFDEKTIVSSTGALALEKVP----ASMIVVGGG 207

Query: 215 DSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAY 268
              +E  +   + G+KV ++   D+         +K +Q R LT   ID    + V  A 
Sbjct: 208 VIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQ-RMLTKQGIDFKLGAKVTGAV 266

Query: 269 GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGT 328
             GD   +     + +  G+ + L    +  A G +P+T      L L   G ++   G 
Sbjct: 267 KSGDGAKV---TFEPVKGGEATTLDAEVVLIATGRKPSTD----GLGLAKAGVVLDSRGR 319

Query: 329 TH------TSVPGVFAAGDV 342
                   TS+ GV+A GDV
Sbjct: 320 VEIDRHFQTSIAGVYAIGDV 339

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* Length = 408

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 51/267 (19%), Positives = 75/267 (28%), Gaps = 59/267 (22%)

Query: 131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVATGAVAKKLQFPGSDA---FW 186
              G      T    D ++    V       L   T+++ATGA  + L            
Sbjct: 76  WLLGV-----TAQSFDPQAH--TVALSDGRTLPYGTLVLATGAAPRALPTLQGATMPVHT 128

Query: 187 NRGIS-ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKI 245
            R +  A  +  G  P      L ++GGG   +E A      G  V ++         ++
Sbjct: 129 LRTLEDARRIQAGLRP---QSRLLIVGGGVIGLELAATARTAGVHVSLVE-----TQPRL 180

Query: 246 MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVS---------DLKVSG 296
           M  RA     +       V   +      +     V   V G V          D+ V G
Sbjct: 181 MS-RAAP-ATLA----DFVARYHAAQGVDLRFERSVTGSVDGVVLLDDGTRIAADMVVVG 234

Query: 297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDV-------QDKKYR- 348
               IG             L  D  I        T+ P V+A GDV         +  R 
Sbjct: 235 ----IGVLANDALARA-AGLACDDGIFVD-AYGRTTCPDVYALGDVTRQRNPLSGRFERI 288

Query: 349 --------QAVTAAGTGCMAALEAEHY 367
                   Q +  A    +    A  Y
Sbjct: 289 ETWSNAQNQGIAVARH--LVDPTAPGY 313

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} Length = 417

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 50/161 (31%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-------IAPGGQ--LT-TTSDV 107
           K  V IIG+G A    AI A +   + ++ +             I+ GG+   T   +  
Sbjct: 27  KQDVVIIGAGAAGMMCAIEAGKRGRRVLVID---HARAPGEKIRISGGGRCNFTNIHASP 83

Query: 108 ENF----PGFPQGILGG----DLMDR-----------------CRNQS-----------L 131
            NF    P F +  L      D +                   C + +            
Sbjct: 84  RNFLSGNPHFCKSALARYRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMK 143

Query: 132 RFGTQIFTET-VSKVDFKSRPFKVFTDSKSVLADTVIVATG 171
             G Q+  ET + +V+  +  F+V T + +V A +++VA+G
Sbjct: 144 EAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVASG 184

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* Length = 455

 Score = 43.6 bits (104), Expect = 6e-05
 Identities = 38/210 (18%), Positives = 72/210 (34%), Gaps = 46/210 (21%)

Query: 153 KVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKP 207
            V    + + A  +++ATG+       P +   + R +++      A      P    K 
Sbjct: 120 LVEETGEELEARYILIATGSAPLIP--PWAQVDYERVVTS----TEALSFPEVP----KR 169

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWN 261
           L V+GGG   +E      + G++V ++   D          S+  + R      + +   
Sbjct: 170 LIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAAE-RVFKKQGLTIRTG 228

Query: 262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSD---LKVSGLFFAIGHEPATKFVDGQLDLHS 318
                       +V   +        ++     L+   +  A+G  P T+     L L +
Sbjct: 229 V-----------RVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTE----GLSLEN 273

Query: 319 DGYIITKPG------TTHTSVPGVFAAGDV 342
            G    + G         T VP ++A GDV
Sbjct: 274 AGLSTDERGRIPVDEHLRTRVPHIYAIGDV 303

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* Length = 437

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 66/359 (18%), Positives = 112/359 (31%), Gaps = 78/359 (21%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF-PGFPQG 116
              V I+G+G     AA      E+K  L  G    ++     L + +D   F P  P  
Sbjct: 4   SAHVVILGAGTGGMPAA-----YEMKEALGSGH---EVT----LISANDYFQFVPSNPW- 50

Query: 117 ILGGDLMDR---CRNQS---LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLA-DTVIVA 169
            +G    +R            R G     ++  ++D +++   +     + +  D +++A
Sbjct: 51  -VGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQIDAEAQ--NITLADGNTVHYDYLMIA 107

Query: 170 TGAVAKKLQF---PGSDAFWNRGISACAVCDGAAPI------FRDKPLAVIGGGDS---- 216
           TG    KL F   PGSD       S C V D A            +P  ++ G  +    
Sbjct: 108 TGP---KLAFENVPGSDPHEGPVQSICTV-DHAERAFAEYQALLREPGPIVIGAMAGASC 163

Query: 217 -------AMEEANFLTKYG------------SKVYIIHRRD------SFRASKIMQNRAL 251
                  AM  A+ L K G            S+ YI H             +K ++    
Sbjct: 164 FGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEE-- 221

Query: 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD 311
               I+   N  V +   E +K  +  +  +   T +   L V         +       
Sbjct: 222 ---GIEAYTNCKVTKV--EDNKMYVTQVD-EKGETIKEMVLPVKFGMMIPAFKGVPAVAG 275

Query: 312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV----QDKKYRQAVTAAGTGCMAALEAEH 366
            +   +  G+++            +FAAG        +       A  TG M       
Sbjct: 276 VEGLCNPGGFVLVDEHQRSKKYANIFAAGIAIAIPPVETTPVPTGAPKTGYMIESMVSA 334

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 Length = 458

 Score = 43.3 bits (103), Expect = 1e-04
 Identities = 71/340 (20%), Positives = 111/340 (32%), Gaps = 87/340 (25%)

Query: 55  QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG--------------- 99
           QT++T + IIG GP  + AAI A +  +  +L EG      A GG               
Sbjct: 2   QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-----ALGGTCLNIGCIPSKALIH 56

Query: 100 ---QLTTTSDVENFPGFPQGILGGDL-MDRCRNQSLRFGTQIFTETVSKVD--FKSRPFK 153
              Q    S          GI      +D    QS+ +   I     + V    K     
Sbjct: 57  VAEQFHQASRFTEPSPL--GISVASPRLD--IGQSVAWKDGIVDRLTTGVAALLKKH--G 110

Query: 154 V--------FTDSKSVL-------ADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDG 198
           V          D K V         + +++ATG+ + +L  P         IS+      
Sbjct: 111 VKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSVEL--PMLP-LGGPVISS----TE 163

Query: 199 A-----APIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQ 247
           A      P    + L V+GGG   +E      K G++V ++  R+          +  + 
Sbjct: 164 ALAPKALP----QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVA 219

Query: 248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT 307
             +L    I +     V        +    G  + N   G    L+   +  A+G  P T
Sbjct: 220 -ESLKKLGIALHLGHSV--------EGYENGCLLANDGKGGQLRLEADRVLVAVGRRPRT 270

Query: 308 KFVDGQLDLHSDGYIITKPGTT-----HTSVPGVFAAGDV 342
           K      +L      +            TS+  V+A GDV
Sbjct: 271 K----GFNLECLDLKMNGAAIAIDERCQTSMHNVWAIGDV 306

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* Length = 478

 Score = 42.9 bits (102), Expect = 1e-04
 Identities = 48/216 (22%), Positives = 83/216 (38%), Gaps = 33/216 (15%)

Query: 144 KVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA---- 199
           +V           +   +    +IVATG+       PG +    + +S+     GA    
Sbjct: 127 RVTPVDGLEGTVKEDHILDVKNIIVATGSEVTPF--PGIEIDEEKIVSS----TGALSLK 180

Query: 200 -APIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALT 252
             P    K L +IGGG   +E  +  ++ GSKV ++  +    A      +K  Q + L 
Sbjct: 181 EIP----KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQ-KFLK 235

Query: 253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG 312
              +D   ++ V+ A    DK V+  + V++  T +  +L+   L  A+G  P       
Sbjct: 236 KQGLDFKLSTKVISAKRNDDKNVVE-IVVEDTKTNKQENLEAEVLLVAVGRRPYIA---- 290

Query: 313 QLDLHSDGYIITKPG------TTHTSVPGVFAAGDV 342
            L     G  + K G        ++  P +   GDV
Sbjct: 291 GLGAEKIGLEVDKRGRLVIDDQFNSKFPHIKVVGDV 326

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* Length = 464

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 51/263 (19%), Positives = 81/263 (30%), Gaps = 62/263 (23%)

Query: 59  TKVCIIGSGPAAHTAAIYAARAE------LKPILFEGWMANDIAPGGQ------------ 100
           T++ I+G+GP+          A+       + + FE     D   GGQ            
Sbjct: 3   TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFE--KQADW--GGQWNYTWRTGLDEN 58

Query: 101 -----------LTTTSDVE--NFPGFPQGILGGD--------------LMDRCRNQSLRF 133
                      L +    E   F  +      G               +  R     +R 
Sbjct: 59  GEPVHSSMYRYLWSNGPKECLEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRK 118

Query: 134 GTQIFTETVSKVDFK--SRPFKVFTDSK------SVLADTVIVATG--AVAKKLQFPGSD 183
             +  T  V  V+F   S+ F V           S   D V+  TG  +     +F G +
Sbjct: 119 YIRFNT-AVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCTGHFSTPYVPEFEGFE 177

Query: 184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS 243
            F   G    A     A  F+DK + ++G   SA +  +   KYG+K  I   R +    
Sbjct: 178 KF--GGRILHAHDFRDALEFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGY 235

Query: 244 KIMQNRALTNPKIDVIWNSVVLE 266
           K  +N       + V   +    
Sbjct: 236 KWPENWDERPNLVRVDTENAYFA 258

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 Length = 566

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 13/59 (22%), Positives = 26/59 (44%)

Query: 30  TSSAAAAASFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
           + +    +        KI  A+    +  T+V ++G+G A   A++ A +A    IL +
Sbjct: 93  SDAKKKKSWDDGWDQDKIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVD 151

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* Length = 464

 Score = 40.6 bits (96), Expect = 6e-04
 Identities = 47/206 (22%), Positives = 82/206 (39%), Gaps = 29/206 (14%)

Query: 151 PFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKP--L 208
           P +V    +   A ++I+ATG+   +L   G   F      +      A  +    P  L
Sbjct: 120 PKEVEVGGERYGAKSLILATGSEPLEL--KGFP-FGEDVWDS----TRALKVEEGLPKRL 172

Query: 209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNS 262
            VIGGG   +E      + G++V +I              + +++ RAL    I V   +
Sbjct: 173 LVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLR-RALEKEGIRVRTKT 231

Query: 263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYI 322
             +    + D   +   +++    G+  ++ V  +  A+G +P T+     L L   G  
Sbjct: 232 KAVGYEKKKDGLHV---RLEPAEGGEGEEVVVDKVLVAVGRKPRTE----GLGLEKAGVK 284

Query: 323 ITKPG------TTHTSVPGVFAAGDV 342
           + + G         TSVPGV+A GD 
Sbjct: 285 VDERGFIRVNARMETSVPGVYAIGDA 310

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* Length = 474

 Score = 40.2 bits (95), Expect = 9e-04
 Identities = 43/203 (21%), Positives = 72/203 (35%), Gaps = 35/203 (17%)

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGA-----APIFRDKPLAVIG 212
           ++ +    +++ATG+       PG     +  +S+     GA      P    + + VIG
Sbjct: 136 TQVIDTKNILIATGSEVTPF--PGITIDEDTIVSS----TGALSLKKVP----EKMVVIG 185

Query: 213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------SKIMQNRALTNPKIDVIWNSVVL 265
            G   +E  +   + G+ V  +               SK  Q R L         N+ V 
Sbjct: 186 AGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQ-RILQKQGFKFKLNTKVT 244

Query: 266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITK 325
            A  + D K+   + ++    G+   +    L   IG  P TK     L L   G  +  
Sbjct: 245 GATKKSDGKID--VSIEAASGGKAEVITCDVLLVCIGRRPFTK----NLGLEELGIELDP 298

Query: 326 PG------TTHTSVPGVFAAGDV 342
            G         T +P ++A GDV
Sbjct: 299 RGRIPVNTRFQTKIPNIYAIGDV 321

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	382
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	100.0
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	100.0
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	100.0
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	100.0
3r9u_A	315	Thioredoxin reductase; structural genomics, center	100.0
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	100.0
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	100.0
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	100.0
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	100.0
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	100.0
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	100.0
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	100.0
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	100.0
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	100.0
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	100.0
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	100.0
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	100.0
4fk1_A	304	Putative thioredoxin reductase; structural genomic	100.0
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	100.0
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	100.0
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	100.0
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	100.0
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	100.0
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	100.0
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	100.0
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	100.0
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	100.0
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	100.0
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	100.0
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	100.0
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	100.0
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	100.0
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	100.0
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	100.0
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	100.0
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	100.0
1fec_A	490	Trypanothione reductase; redox-active center, oxid	100.0
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	100.0
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	100.0
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	100.0
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	100.0
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	100.0
1ojt_A	482	Surface protein; redox-active center, glycolysis,	100.0
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	100.0
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	100.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	100.0
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	100.0
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	100.0
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	100.0
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	100.0
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	100.0
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	100.0
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	100.0
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	100.0
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	100.0
4dna_A	463	Probable glutathione reductase; structural genomic	100.0
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	100.0
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	100.0
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	100.0
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	100.0
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	100.0
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	100.0
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	100.0
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	100.0
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	100.0
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	100.0
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	100.0
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	100.0
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	100.0
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	100.0
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	100.0
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	100.0
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	100.0
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	100.0
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	100.0
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	100.0
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	99.98
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	99.98
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	99.97
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	99.97
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.97
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	99.97
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	99.97
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	99.96
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	99.96
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	99.96
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.96
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	99.96
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	99.9
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.86
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	99.77
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.72
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	99.7
2cul_A	232	Glucose-inhibited division protein A-related PROT	99.69
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	99.58
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	99.57
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	99.53
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	99.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.34
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	99.21
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.17
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.15
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.15
2bry_A	497	NEDD9 interacting protein with calponin homology a	99.14
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.13
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.13
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.12
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.12
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.1
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.1
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.09
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	99.07
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.07
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.07
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.06
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	99.06
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.06
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	99.05
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.04
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.04
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	99.04
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.03
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	99.03
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.01
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.01
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	99.0
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	99.0
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	99.0
3dme_A	369	Conserved exported protein; structural genomics, P	99.0
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	98.98
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	98.98
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.98
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	98.98
3atr_A	453	Conserved archaeal protein; saturating double bond	98.98
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	98.97
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	98.97
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	98.97
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.97
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.96
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.96
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.95
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.95
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	98.95
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.95
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.95
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	98.94
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.93
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.93
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.92
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.92
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.92
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.91
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	98.91
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.91
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.9
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.9
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	98.9
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.9
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.9
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.9
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	98.89
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.88
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.88
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.87
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	98.87
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.87
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.86
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	98.86
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.86
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	98.84
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.84
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	98.83
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	98.83
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	98.82
4dna_A	463	Probable glutathione reductase; structural genomic	98.81
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.81
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	98.8
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.8
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.8
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	98.79
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	98.79
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.79
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	98.78
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	98.78
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	98.77
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.76
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.75
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	98.75
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	98.73
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.73
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.72
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.7
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.7
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.7
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.7
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.67
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	98.67
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.67
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	98.65
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.64
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.64
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	98.64
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	98.63
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.63
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.62
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.61
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.59
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.58
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	98.57
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.57
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.57
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	98.57
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	98.56
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	98.54
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	98.53
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.52
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	98.51
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	98.5
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	98.49
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.49
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	98.48
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	98.48
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.46
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.46
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.41
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.38
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.35
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.34
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.33
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.32
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.31
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.31
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.3
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.3
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	98.29
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.29
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.27
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.26
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	98.26
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.23
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.22
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.21
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.19
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.18
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	98.18
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	98.18
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.17
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.16
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.16
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.14
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.13
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.11
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.1
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	98.07
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	98.06
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	98.06
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	98.06
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	98.05
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.05
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.01
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	98.0
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.99
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.98
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.97
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.96
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.96
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	97.93
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.93
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.92
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.9
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.9
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.88
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.88
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.85
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.84
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.83
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	97.83
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.83
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	97.83
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.82
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.82
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.82
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.8
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.78
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.78
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.76
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.75
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.75
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.72
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.72
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.72
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.72
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.71
3atr_A	453	Conserved archaeal protein; saturating double bond	97.71
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.7
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.69
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.66
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.66
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.66
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	97.65
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.64
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.61
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.54
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.51
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.5
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.5
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	97.49
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.49
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.48
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.46
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	97.46
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.45
3dme_A	369	Conserved exported protein; structural genomics, P	97.43
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	97.42
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.41
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.36
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.32
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.32
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.32
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	97.3
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.28
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	97.28
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.26
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.25
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.25
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.22
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.21
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.2
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.17
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.16
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.07
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.07
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.07
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	97.03
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.99
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	96.97
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	96.97
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	96.94
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	96.94
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	96.93
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	96.79
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	96.78
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	96.78
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	96.66
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	96.65
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	96.65
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	96.63
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	96.6
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	96.59
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	96.55
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	96.52
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	96.52
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	96.47
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	96.42
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	96.42
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	96.38
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	96.37
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	96.31
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.3
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	96.25
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	96.18
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	96.03
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.01
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	95.99
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	95.94
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	95.94
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	95.92
1id1_A	153	Putative potassium channel protein; RCK domain, E.	95.81
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	95.71
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	95.66
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	95.6
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.43
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.39
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	95.3
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.21
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.19
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	95.01
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	94.91
3c85_A	183	Putative glutathione-regulated potassium-efflux S	94.67
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	94.5
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	94.46
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	94.17
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.91
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	93.81
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	93.75
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	93.74
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	93.74
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	93.73
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.69
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	93.61
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	93.55
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	93.52
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	93.25
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	93.17
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	93.13
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	93.11
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	93.1
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	93.09
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	93.08
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	92.96
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	92.93
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	92.92
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	92.86
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	92.81
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	92.71
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	92.71
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	92.7
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	92.68
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	92.62
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	92.62
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	92.57
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	92.56
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	92.52
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	92.49
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	92.45
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	92.41
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	92.39
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	92.37
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	92.28
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	92.25
3tl2_A	315	Malate dehydrogenase; center for structural genomi	92.08
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	92.05
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	92.01
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	91.99
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	91.95
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	91.94
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	91.93
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	91.92
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	91.9
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	91.89
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	91.86
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	91.75
1id1_A	153	Putative potassium channel protein; RCK domain, E.	91.74
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	91.73
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	91.72
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.71
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	91.69
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.62
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.55
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	91.52
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	91.52
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	91.41
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	91.35
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	91.33
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	91.32
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.31
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	91.3
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	91.3
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	91.29
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	91.28
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	91.23
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	91.16
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	91.02
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.97
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	90.96
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	90.96
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	90.93
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	90.89
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	90.87
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	90.86
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	90.82
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	90.76
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	90.75
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	90.74
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	90.74
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	90.73
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	90.65
3hn7_A	524	UDP-N-acetylmuramate-L-alanine ligase; ATP-binding	90.64
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	90.6
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	90.54
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	90.52
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	90.52
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	90.52
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	90.5
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	90.41
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	90.38
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	90.37
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	90.35
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	90.27
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	90.24
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	90.07
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	90.05
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	90.03
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	90.02
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	90.0
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.97
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	89.97
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	89.91
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	89.88
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	89.88
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	89.88
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	89.83
3qha_A	296	Putative oxidoreductase; seattle structural genomi	89.81

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=100.00  E-value=3.2e-46  Score=345.59  Aligned_cols=322  Identities=84%  Similarity=1.323  Sum_probs=264.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||++.......|+.+.......+++.++..+...++.+++.+.+.+.+++
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   86 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTT   86 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCCE
Confidence            45899999999999999999999999999999643335567787776655566777776677889999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc----ccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA----FWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      ++.++|..++.+++.+.+.+++.+++||+||+|+|.+|..|++||.+.    ++.+.++.+...+.......+++++|||
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  166 (333)
T 1vdc_A           87 IFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKRLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIG  166 (333)
T ss_dssp             EECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEECCCCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEEC
T ss_pred             EEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCcCCCCCCCccccccccccCcEEEeccCccchhhcCCCeEEEEC
Confidence            998889999988888888776778999999999999999999998765    5445555555545442125689999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      +|.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++++.++..++++..+..+.+.+..+++..++
T Consensus       167 ~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i  246 (333)
T 1vdc_A          167 GGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDL  246 (333)
T ss_dssp             CSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEE
T ss_pred             CChHHHHHHHHHHhcCCeEEEEecCCcCCccHHHHHHHHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEE
Confidence            99999999999999999999999999887767766677788999999999999999876421255577765334555789


Q ss_pred             ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ++|.+++++|++|+..++..++.++++|++.||+++++|+.|+|||+|||+..+++++..|+.+|+.+|.+|.++|.+++
T Consensus       247 ~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  326 (333)
T 1vdc_A          247 KVSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQEIG  326 (333)
T ss_dssp             ECSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ecCEEEEEeCCccchHHhhccccccCCCCEEechhhcccCCCCEEEeeeccCCCchhHHHHHHhHHHHHHHHHHHHHhcc
Confidence            99999999999999988876777888999999997689999999999999986568899999999999999999999988


Q ss_pred             Cccccc
Q 016820          373 SQEDKS  378 (382)
Q Consensus       373 ~~~~~~  378 (382)
                      +++.+.
T Consensus       327 ~~~~~~  332 (333)
T 1vdc_A          327 SQEGKS  332 (333)
T ss_dssp             ------
T ss_pred             ccccCC
Confidence            887765

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=100.00  E-value=3.9e-46  Score=345.47  Aligned_cols=314  Identities=65%  Similarity=1.075  Sum_probs=272.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...+||+|||||++|+++|..|++.|++|+|||+........||.+.......++|+++......++.+++.+.+.++++
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv   99 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFGT   99 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcCC
Confidence            35689999999999999999999999999999975444667899988877777788888878889999999999999999


Q ss_pred             EEEEeeEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          136 QIFTETVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      +++.++|.+++.+++.+.+.+    ++..+.||+||+|+|.+|+.|.+||.+.++...++.+...+.......+++++||
T Consensus       100 ~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~vv  179 (338)
T 3itj_A          100 EIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASAKRMHLPGEETYWQKGISACAVCDGAVPIFRNKPLAVI  179 (338)
T ss_dssp             EEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEE
T ss_pred             EEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCcCCCCCCCchhccCccEEEchhcccchhhcCCCEEEEE
Confidence            999999999999988888876    4466999999999999999999999877766667666655555435568999999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEE
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD  291 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~  291 (382)
                      |+|.+|+|+|..|.+.+.+|+++++.+.+.....+.+++.+..||++++++.+.+++.++++  +..+++.+..++++.+
T Consensus       180 G~G~~g~e~a~~l~~~g~~v~~v~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~~--~~~v~~~~~~~g~~~~  257 (338)
T 3itj_A          180 GGGDSACEEAQFLTKYGSKVFMLVRKDHLRASTIMQKRAEKNEKIEILYNTVALEAKGDGKL--LNALRIKNTKKNEETD  257 (338)
T ss_dssp             CSSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEESSSS--EEEEEEEETTTTEEEE
T ss_pred             CCCHHHHHHHHHHHhcCCEEEEEEcCCccCCCHHHHHHHHhcCCeEEeecceeEEEEcccCc--EEEEEEEECCCCceEE
Confidence            99999999999999999999999999988777777666556679999999999999987753  5567777655566678


Q ss_pred             EecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          292 LKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       292 ~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      +++|.|++++|++|+..++..++.++++|++.+++.+++|+.|||||+|||+...++.+..|+.+|+.||.+|.++|.++
T Consensus       258 i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~  337 (338)
T 3itj_A          258 LPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQDSKYRQAITSAGSGCMAALDAEKYLTSL  337 (338)
T ss_dssp             EECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccCCCCccceeeehhhhHHHHHHHHHHHhcC
Confidence            99999999999999999887778888999999755589999999999999998667899999999999999999999864

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=100.00  E-value=6.7e-46  Score=340.58  Aligned_cols=309  Identities=60%  Similarity=1.022  Sum_probs=264.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .+||+||||||||++||..|+++|++|+|||+....+..++|.+......+++|+++..+...++.+++.+.+.+.++.+
T Consensus         4 ~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~~~~   83 (314)
T 4a5l_A            4 IHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYGTTI   83 (314)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcCcEE
Confidence            48999999999999999999999999999997544445667777777777888999988999999999999999999999


Q ss_pred             EEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCch
Q 016820          138 FTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS  216 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  216 (382)
                      ...++..+....+.+.+.+ ++.++.||+||+|||++|+.|++||.+..+...+..+...........+++++|||+|.+
T Consensus        84 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~~~~~~~vvViGgG~i  163 (314)
T 4a5l_A           84 ITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATAKRMHVPGEDKYWQNGVSACAICDGAVPIFRNKVLMVVGGGDA  163 (314)
T ss_dssp             ECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEECCCCCTTHHHHBTTTEESCHHHHTTSGGGTTSEEEEECSSHH
T ss_pred             EEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccccccCCCccccccccceeeehhhhhhhhhcCCCeEEEECCChH
Confidence            8888888877776665555 446799999999999999999999988766666777766666654567899999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       217 a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                      |+|+|..|.++|.+||+++|.+.+........+.....+++.+....+.++......  ...+.+.....+++..+++|.
T Consensus       164 g~e~A~~l~~~G~~Vt~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~i~~d~  241 (314)
T 4a5l_A          164 AMEEALHLTKYGSKVIILHRRDAFRASKTMQERVLNHPKIEVIWNSELVELEGDGDL--LNGAKIHNLVSGEYKVVPVAG  241 (314)
T ss_dssp             HHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSSS--EEEEEEEETTTCCEEEEECSE
T ss_pred             HHHHHHHHHHhCCeeeeecccccccccchhhhhhhcccceeeEeeeeeEEEEeeeec--cceeEEeecccccceeecccc
Confidence            999999999999999999998888776666667778889999999999998876543  455777766667778999999


Q ss_pred             EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       297 vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +++++|.+|++.++...+..+++|++ +|+ .++|+.|||||+|||++.+.+++..|+.+|+.||.+|.+||+.
T Consensus       242 vi~a~G~~pn~~~l~~~~~~~~~G~i-v~~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~  313 (314)
T 4a5l_A          242 LFYAIGHSPNSKFLGGQVKTADDGYI-LTE-GPKTSVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT  313 (314)
T ss_dssp             EEECSCEEESCGGGTTSSCBCTTSCB-CCB-TTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ceEecccccChhHhcccceEcCCeeE-eCC-CCccCCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999877788888887 777 6899999999999999876778999999999999999999963

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=100.00  E-value=7.2e-44  Score=328.76  Aligned_cols=308  Identities=44%  Similarity=0.764  Sum_probs=253.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+    . ..||.+........+++++..+...++.+++.+.+++++++
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~----~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~   81 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEK----G-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAK   81 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES----S-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeC----C-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            358999999999999999999999999999995    3 57888876666666777766677889999999999999999


Q ss_pred             EEEeeEEEEEec--CCc-EEEEE-CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          137 IFTETVSKVDFK--SRP-FKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       137 ~~~~~v~~i~~~--~~~-~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      ++.++|.+++.+  ++. +.+.+ ++..+.||+||+|+|.+|+.|++||.+.+....++.+...+..  ...+++++|||
T Consensus        82 ~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG  159 (325)
T 2q7v_A           82 VEMDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADPRKLGIPGEDNFWGKGVSTCATCDGF--FYKGKKVVVIG  159 (325)
T ss_dssp             EEECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--GGTTCEEEEEC
T ss_pred             EEeeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhccCceEEEeccCCHH--HcCCCEEEEEC
Confidence            988889999887  443 55543 5567999999999999999999999876555555554444443  45679999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      +|.+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++++.++..++.   +.++.+.+..+++..++
T Consensus       160 ~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~i~~~~~v~~i~~~~~---v~~v~~~~~~~g~~~~i  236 (325)
T 2q7v_A          160 GGDAAVEEGMFLTKFADEVTVIHRRDTLRANKVAQARAFANPKMKFIWDTAVEEIQGADS---VSGVKLRNLKTGEVSEL  236 (325)
T ss_dssp             CSHHHHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSS---EEEEEEEETTTCCEEEE
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEeCCCcCCcchHHHHHHHhcCCceEecCCceEEEccCCc---EEEEEEEECCCCcEEEE
Confidence            999999999999999999999999988876666666666678999999999999998642   44577764334555689


Q ss_pred             ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ++|.+++++|++|+.+++...+.++++|++.||+ +++|++|+||++|||+...++.+..|+.||+.+|.+|..+|.+++
T Consensus       237 ~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  315 (325)
T 2q7v_A          237 ATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRD-EIYTNIPMLFAAGDVSDYIYRQLATSVGAGTRAAMMTERQLAALE  315 (325)
T ss_dssp             ECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBT-TTBCSSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EcCEEEEccCCCCChHHHhhhcccCCCccEecCC-CCccCCCCEEEeecccCccHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999998887336677899999999 688999999999999976568999999999999999999999876


Q ss_pred             Ccc
Q 016820          373 SQE  375 (382)
Q Consensus       373 ~~~  375 (382)
                      +..
T Consensus       316 ~~~  318 (325)
T 2q7v_A          316 VEG  318 (325)
T ss_dssp             ---
T ss_pred             ccc
Confidence            543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=100.00  E-value=2e-44  Score=330.71  Aligned_cols=302  Identities=39%  Similarity=0.674  Sum_probs=261.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEE-EecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPIL-FEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~l-ie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .++||+|||||++|+++|..|++.|++|+| +|+     ..+||.+........+|+++......++..++.+.++++++
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-----~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   77 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-----GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGL   77 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-----SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-----CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCc
Confidence            357999999999999999999999999999 994     35688888777777788887778899999999999999999


Q ss_pred             EEEEeeEEEEEecC--CcEE--EEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          136 QIFTETVSKVDFKS--RPFK--VFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       136 ~~~~~~v~~i~~~~--~~~~--v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      +++.++|..+ .++  +.+.  +.+++ ++.||+||+|||..|+.|.+||.+.+....++.+.+....  ...+++++|+
T Consensus        78 ~~~~~~v~~i-~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vi  153 (315)
T 3r9u_A           78 KHEMVGVEQI-LKNSDGSFTIKLEGGK-TELAKAVIVCTGSAPKKAGFKGEDEFFGKGVSTCATCDGF--FYKNKEVAVL  153 (315)
T ss_dssp             EEECCCEEEE-EECTTSCEEEEETTSC-EEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGTTSEEEEE
T ss_pred             EEEEEEEEEE-ecCCCCcEEEEEecCC-EEEeCEEEEeeCCCCCCCCCCChhhcCCCeEEeeeccccc--ccCcCEEEEE
Confidence            9999999999 666  6787  55555 8999999999999999999999887766666666665555  5568999999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEE
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD  291 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~  291 (382)
                      |+|.+++|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++.+.++..++++  +.++++. ..+++..+
T Consensus       154 G~g~~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~~--~~~v~~~-~~~g~~~~  230 (315)
T 3r9u_A          154 GGGDTALEEALYLANICSKIYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMG--VAGVKVK-LKDGSIRD  230 (315)
T ss_dssp             CCBHHHHHHHHHHHTTSSEEEEECSSSSCBSCHHHHHHHHHCTTEEEECSCEEEEEEEETTE--EEEEEEE-CTTSCEEE
T ss_pred             CCCHHHHHHHHHHHhhCCEEEEEEeCCCCCCCHHHHHHHHhcCCeEEEeCcEEEEEEcCCCc--EEEEEEE-cCCCCeEE
Confidence            99999999999999999999999999988776667677778899999999999999887642  5557776 22355568


Q ss_pred             EecCeEEEeeCCCCChhhhcc-----cccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          292 LKVSGLFFAIGHEPATKFVDG-----QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       292 ~~~D~vi~~~G~~p~~~~~~~-----~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +++|.+++++|++|+..++..     ++.++++|++.||+ +++|+.|||||+|||++..++.+..|+.+|+.+|.+|.+
T Consensus       231 ~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~-~~~t~~~~v~a~GD~~~~~~~~~~~A~~~g~~aa~~i~~  309 (315)
T 3r9u_A          231 LNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDL-KMQTSVAGLFAAGDLRKDAPKQVICAAGDGAVAALSAMA  309 (315)
T ss_dssp             ECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCC-CcccCCCCEEEeecccCCchhhhhhHHhhHHHHHHHHHH
Confidence            999999999999999998874     38888899999999 889999999999999875678999999999999999999


Q ss_pred             HHHHc
Q 016820          367 YLQEI  371 (382)
Q Consensus       367 ~l~~~  371 (382)
                      +|.++
T Consensus       310 ~l~~~  314 (315)
T 3r9u_A          310 YIESL  314 (315)
T ss_dssp             HHHHC
T ss_pred             HHHhc
Confidence            99875

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=100.00  E-value=4.7e-44  Score=328.17  Aligned_cols=305  Identities=43%  Similarity=0.695  Sum_probs=249.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++||+||||||||++||.+|+++|++|+|||+.     .+||++....+.+++|.++ .....++.........+.+..
T Consensus         5 ~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-----~~gG~~~~~~~i~~~p~~~-~~~~~~~~~~~~~~~~~~~~~   78 (312)
T 4gcm_A            5 IDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-----IPGGQMANTEEVENFPGFE-MITGPDLSTKMFEHAKKFGAV   78 (312)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----CTTGGGGGCSCBCCSTTCS-SBCHHHHHHHHHHHHHHTTCE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-----CCCCeeecccccCCcCCcc-ccchHHHHHHHHHHHhhcccc
Confidence            5699999999999999999999999999999952     6788888777777777764 456788888888888888888


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCch
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS  216 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  216 (382)
                      +..+.............+..++.++.||+||+|||++|+.|++||.+.+..+.++.+...+..  ...+++++|||+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~~~~~ipG~~~~~~~~v~~~~~~~~~--~~~~k~vvViGgG~i  156 (312)
T 4gcm_A           79 YQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGA--FFKNKRLFVIGGGDS  156 (312)
T ss_dssp             EEECCCCEEEECSSCEEEECSSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--GGTTCEEEEECCSHH
T ss_pred             ccceeeeeeeeeecceeeccCCeEEEeceeEEcccCccCcCCCCChhhhCCccEEeeeccCcc--ccCCCEEEEECCCHH
Confidence            877744344334444556667788999999999999999999999988777777776666655  567899999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       217 a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                      |+|+|..|.++|.+||++++.+.+........+.++..++.......+..+...+..  ...........++...+++|.
T Consensus       157 g~E~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~d~  234 (312)
T 4gcm_A          157 AVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGK--VGSVTLTSTKDGSEETHEADG  234 (312)
T ss_dssp             HHHHHHHHTTTCSEEEEECSSSSCCSCHHHHHHHHHCTTEEEECSEEEEEEEEETTE--EEEEEEEETTTCCEEEEECSE
T ss_pred             HHHHHHHHHhcCCEEEEEecccccCcchhHHHHHHHhcCcceeeecceeeeeccccc--cccceeeeecCCceeEEeeee
Confidence            999999999999999999999988766665566778889988888877777766542  222333333445668899999


Q ss_pred             EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       297 vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      +++++|.+|+..++......+++|+|.||+ +++|++|||||+|||++..+++++.|+.+|+.||.+|.++|....
T Consensus       235 v~~~~g~~~~~~~~~~~g~~~~~G~I~vd~-~~~Ts~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~l~  309 (312)
T 4gcm_A          235 VFIYIGMKPLTAPFKDLGITNDVGYIVTKD-DMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLN  309 (312)
T ss_dssp             EEECSCEEESCGGGGGGTCBCTTSCBCCCT-TSBCSSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeecCCCcCchhHHhcceecCCCeEeeCC-CCccCCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            999999999998877333356789999998 889999999999999976678899999999999999999998643

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=100.00  E-value=1e-44  Score=335.83  Aligned_cols=307  Identities=51%  Similarity=0.850  Sum_probs=256.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+.     ..||.+........+|.++..+...++.+++.+.+.+++++
T Consensus        13 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~   87 (335)
T 2a87_A           13 PVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-----SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGAD   87 (335)
T ss_dssp             CCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-----SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-----CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCE
Confidence            4589999999999999999999999999999942     56777766555566777776678889999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEE-EEC-CeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820          137 IFTETVSKVDFKSRPFKV-FTD-SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v-~~~-~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  214 (382)
                      ++.+++..++. .+.+.+ .++ +.++.||+||+|+|.+|+.|++||.+.+....++.+...+..  ...+++++|||+|
T Consensus        88 ~~~~~v~~i~~-~~~~~v~~~~~g~~~~~d~lviAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G  164 (335)
T 2a87_A           88 LRMEDVESVSL-HGPLKSVVTADGQTHRARAVILAMGAAARYLQVPGEQELLGRGVSSCATCDGF--FFRDQDIAVIGGG  164 (335)
T ss_dssp             EECCCEEEEEC-SSSSEEEEETTSCEEEEEEEEECCCEEECCCCCTHHHHTBTTTEESCHHHHGG--GGTTCEEEEECSS
T ss_pred             EEEeeEEEEEe-CCcEEEEEeCCCCEEEeCEEEECCCCCccCCCCCchHhccCCceEEeeccchh--hcCCCEEEEECCC
Confidence            99889989987 555666 554 457999999999999999999998766555555555444444  3568999999999


Q ss_pred             chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                      .+|+|+|..|.+.+.+|+++++.+.+.....+.++++++.||++++++++.+++.+++   +..+.+.+..+++..++++
T Consensus       165 ~~g~e~a~~l~~~g~~V~l~~~~~~~~~~~~~~~~~~~~~gV~v~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~i~~  241 (335)
T 2a87_A          165 DSAMEEATFLTRFARSVTLVHRRDEFRASKIMLDRARNNDKIRFLTNHTVVAVDGDTT---VTGLRVRDTNTGAETTLPV  241 (335)
T ss_dssp             HHHHHHHHHHTTTCSEEEEECSSSSCSSCTTHHHHHHHCTTEEEECSEEEEEEECSSS---CCEEEEEEETTSCCEEECC
T ss_pred             HHHHHHHHHHHHhCCeEEEEEcCCcCCccHHHHHHHhccCCcEEEeCceeEEEecCCc---EeEEEEEEcCCCceEEeec
Confidence            9999999999999999999999988876666655667789999999999999987753   3447776433344468999


Q ss_pred             CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      |.|++++|++|++.++..++.++++|++.||+.+++|+.|+|||+|||+...++++..|+.+|+.+|.+|.++|.+++..
T Consensus       242 D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~~~~~~~~~~~A~~~g~~aA~~i~~~l~~~~~~  321 (335)
T 2a87_A          242 TGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDLVDRTYRQAVTAAGSGCAAAIDAERWLAEHAAT  321 (335)
T ss_dssp             SCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGGTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeecCCccHHHHHHHHHhHHHHHHHHHHHhhcCcCc
Confidence            99999999999998887677788899999999778999999999999998666889999999999999999999987654

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=100.00  E-value=7.5e-44  Score=327.88  Aligned_cols=304  Identities=38%  Similarity=0.657  Sum_probs=256.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+    .  .||.+........++.++. ....++.+++.+.+.+++++
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~----~--~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~   86 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSARYMLKTLVIGE----T--PGGQLTEAGIVDDYLGLIE-IQASDMIKVFNKHIEKYEVP   86 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES----S--TTGGGGGCCEECCSTTSTT-EEHHHHHHHHHHHHHTTTCC
T ss_pred             CccCEEEECccHHHHHHHHHHHHCCCcEEEEec----c--CCCeecccccccccCCCCC-CCHHHHHHHHHHHHHHcCCE
Confidence            358999999999999999999999999999995    3  7888776655556666643 56789999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ++..+|.+++.+++.+.+.+++ .++.||+||+|+|..|+.|+++|.+.+....++.+...+..  ...+++++|+|+|.
T Consensus        87 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~  164 (323)
T 3f8d_A           87 VLLDIVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKRRKLGVPGEQEFAGRGISYCSVADAP--LFKNRVVAVIGGGD  164 (323)
T ss_dssp             EEESCEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEECCCCCTTTTTTBTTTEESCHHHHGG--GGTTCEEEEECCSH
T ss_pred             EEEEEEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCCccCCCCchhhhcCCceEEeccCCHh--HcCCCEEEEECCCH
Confidence            9888899999988888888766 67999999999999999999999887666666555554444  55689999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                      +++|+|..|.+.+.+|+++++.+.+.....+.++++++.||+++.++++.++..++.   +..+++.+..+++...+++|
T Consensus       165 ~~~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~~~~~~~D  241 (323)
T 3f8d_A          165 SALEGAEILSSYSTKVYLIHRRDTFKAQPIYVETVKKKPNVEFVLNSVVKEIKGDKV---VKQVVVENLKTGEIKELNVN  241 (323)
T ss_dssp             HHHHHHHHHHHHSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEECSEEEEEEEESSS---EEEEEEEETTTCCEEEEECS
T ss_pred             HHHHHHHHHHHhCCeEEEEEeCCCCCcCHHHHHHHHhCCCcEEEeCCEEEEEeccCc---eeEEEEEECCCCceEEEEcC
Confidence            999999999999999999999998877666666777777999999999999998753   45577776444555689999


Q ss_pred             eEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          296 GLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       296 ~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      .+++++|++|+.+++. .++.++++|++.||+ +++|+.||||++|||+..  .++.+..|+.+|+.+|.+|.++|.+++
T Consensus       242 ~vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  320 (323)
T 3f8d_A          242 GVFIEIGFDPPTDFAKSNGIETDTNGYIKVDE-WMRTSVPGVFAAGDCTSAWLGFRQVITAVAQGAVAATSAYRYVTEKK  320 (323)
T ss_dssp             EEEECCCEECCHHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBSTTTTCCCHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEEECCCCChhHHhhcCeeecCCCcEecCC-CceecCCCEEEcceecCCCCcccceeehhhHHHHHHHHHHHHHHHhh
Confidence            9999999999988776 567888999999998 888999999999999975  378999999999999999999999876


Q ss_pred             C
Q 016820          373 S  373 (382)
Q Consensus       373 ~  373 (382)
                      .
T Consensus       321 ~  321 (323)
T 3f8d_A          321 G  321 (323)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=100.00  E-value=1.2e-43  Score=325.18  Aligned_cols=302  Identities=37%  Similarity=0.637  Sum_probs=251.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      +||+|||||++|+++|..|++.|+ +|+|||+.     ..||.+........+++++......++.+++.+.+.++++++
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~   76 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-----MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKH   76 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-----STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEE
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-----CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEE
Confidence            689999999999999999999999 99999952     567777666555667777667788999999999999999999


Q ss_pred             EEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCch
Q 016820          138 FTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS  216 (382)
Q Consensus       138 ~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  216 (382)
                      +..+|..++.+++.+.+.+ ++.++.||+||+|+|++|+.|+++|.+.+....++.+...+..  ...+++++|||+|.+
T Consensus        77 ~~~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG~G~~  154 (311)
T 2q0l_A           77 EMTAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSPKRTGIKGESEYWGKGVSTCATCDGF--FYKNKEVAVLGGGDT  154 (311)
T ss_dssp             ECSCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEECCCCCBTHHHHBTTTEESCHHHHGG--GGTTSEEEEECCSHH
T ss_pred             EEEEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCCCCCCCCChhhccCCcEEEeecCChh--hcCCCEEEEECCCHH
Confidence            8888999998888777755 4457999999999999999999998766544445444444443  446799999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       217 a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                      |+|+|..|.+.+.+|+++++.+.+.....+.+++.++.||++++++.+.++..++++  +..+.+....+++..++++|.
T Consensus       155 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~--v~~v~~~~~~~g~~~~i~~D~  232 (311)
T 2q0l_A          155 AVEEAIYLANICKKVYLIHRRDGFRCAPITLEHAKNNDKIEFLTPYVVEEIKGDASG--VSSLSIKNTATNEKRELVVPG  232 (311)
T ss_dssp             HHHHHHHHHTTSSEEEEECSSSSCCSCHHHHHHHHTCTTEEEETTEEEEEEEEETTE--EEEEEEEETTTCCEEEEECSE
T ss_pred             HHHHHHHHHhcCCEEEEEeeCCccCCCHHHHHHHhhCCCeEEEeCCEEEEEECCCCc--EeEEEEEecCCCceEEEecCE
Confidence            999999999999999999999888766666655556689999999999999987432  445777643335556799999


Q ss_pred             EEEeeCCCCChhhhcc-c----ccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          297 LFFAIGHEPATKFVDG-Q----LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       297 vi~~~G~~p~~~~~~~-~----~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +++++|++|+++++.. +    +.++++|++.||+ +++|+.|||||+|||+...++.+..|+.||+.+|.+|.++|.+
T Consensus       233 vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~  310 (311)
T 2q0l_A          233 FFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDF-SMKTNVQGLFAAGDIRIFAPKQVVCAASDGATAALSVISYLEH  310 (311)
T ss_dssp             EEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCT-TCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             EEEEecCccChhhhhcccccceeEeccCCCEEeCC-ccccCCCCeEEcccccCcchHHHHHHHHhHHHHHHHHHHHHhh
Confidence            9999999999988762 2    6778899999998 7889999999999999765789999999999999999999874

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=100.00  E-value=1.5e-43  Score=325.84  Aligned_cols=307  Identities=47%  Similarity=0.801  Sum_probs=252.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|+.     .+||.+........+|.++..+...++.+++.+.+.+.+++
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-----~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-----EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETE   78 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-----STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCE
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-----CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence            3589999999999999999999999999999942     57777766665566777777778889999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCch
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS  216 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  216 (382)
                      ++.+++..++.+++.+.+..++.++.||+||+|+|.+|..|++||.+.+....++.+...+..  ...+++++|||+|.+
T Consensus        79 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~ViG~G~~  156 (320)
T 1trb_A           79 IIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNT  156 (320)
T ss_dssp             EECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEECCCCCHHHHHTBTTTEESCHHHHGG--GGTTSEEEEECSSHH
T ss_pred             EEEeeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCcCCCCCCChHHhCCceeEecccCCcc--ccCCCeEEEECCCHH
Confidence            999999999988888877446678999999999999999888888765555555554444444  456899999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCcchHHHH---HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC-CceEEE
Q 016820          217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQ---NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT-GQVSDL  292 (382)
Q Consensus       217 a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~-~~~~~~  292 (382)
                      |+|+|..|.+.+.+|+++++.+.+.....+.   .+.+++.||++++++++.++..++++  +.++.+.+..+ +++.++
T Consensus       157 g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~--v~~v~~~~~~~~g~~~~i  234 (320)
T 1trb_A          157 AVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMG--VTGVRLRDTQNSDNIESL  234 (320)
T ss_dssp             HHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTSSEEEECSCEEEEEEECSSS--EEEEEEECCTTCCCCEEE
T ss_pred             HHHHHHHHHhcCCeEEEEEeCCccccCHHHHHHHHHhcccCCeEEEcCceeEEEEcCCCc--eEEEEEEeccCCCceEEE
Confidence            9999999999999999999998875443332   24456789999999999999987642  55577765322 344679


Q ss_pred             ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCC----CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHH
Q 016820          293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGT----THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~----~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      ++|.+++|+|++|++.++..++.++ +|++.+|+.+    ++|+.|+||++|||+..+++++..|+.+|+.||.+|.++|
T Consensus       235 ~~D~vv~a~G~~p~~~~~~~~l~~~-~G~i~vd~~~~~~~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l  313 (320)
T 1trb_A          235 DVAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYL  313 (320)
T ss_dssp             ECSEEEECSCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSSTTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             EcCEEEEEeCCCCChHHhccccccc-CceEEECCCcccccccCCCCCEEEcccccCCcchhhhhhhccHHHHHHHHHHHH
Confidence            9999999999999998887677778 9999999953    4899999999999998667899999999999999999999


Q ss_pred             HHccC
Q 016820          369 QEIGS  373 (382)
Q Consensus       369 ~~~~~  373 (382)
                      .+++.
T Consensus       314 ~~~~~  318 (320)
T 1trb_A          314 DGLAD  318 (320)
T ss_dssp             TC---
T ss_pred             Hhccc
Confidence            87653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=100.00  E-value=3.4e-43  Score=323.45  Aligned_cols=303  Identities=30%  Similarity=0.516  Sum_probs=248.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+.     ..||.+........++++ ..+...++.+++.+.+.+.+++
T Consensus        15 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-----~~gg~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~   88 (319)
T 3cty_A           15 RDFDVVIVGAGAAGFSAAVYAARSGFSVAILDKA-----VAGGLTAEAPLVENYLGF-KSIVGSELAKLFADHAANYAKI   88 (319)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----STTGGGGGCSCBCCBTTB-SSBCHHHHHHHHHHHHHTTSEE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeCC-----CCCccccccchhhhcCCC-cccCHHHHHHHHHHHHHHcCCE
Confidence            3589999999999999999999999999999952     467777655554555554 3456788899999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCch
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDS  216 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~  216 (382)
                      ++.+++..++.+++.+.+.+++.++.||+||+|+|++|+.|+++|.+.+....++.+...+..  ...+++++|||+|.+
T Consensus        89 ~~~~~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~~~~~i~g~~~~~~~~~~~~~~~~~~--~~~~~~v~viG~G~~  166 (319)
T 3cty_A           89 REGVEVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTHKHLGVKGESEYFGKGTSYCSTCDGY--LFKGKRVVTIGGGNS  166 (319)
T ss_dssp             EETCCEEEEEEETTEEEEEESSSEEEEEEEEECCCEEECCCCCBTTTTTBTTTEESCHHHHGG--GGBTSEEEEECCSHH
T ss_pred             EEEeeEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCcccCCCCChHHhCCceEEEEEecchh--hcCCCeEEEECCCHH
Confidence            888889999988887778777778999999999999999999998766544444444333333  345789999999999


Q ss_pred             HHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          217 AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       217 a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                      |+|+|..|.+.+.+|+++++.+.+.....+.+ .+.+.||++++++++.++..+++.  +.++.+.+..+++...+++|.
T Consensus       167 g~e~a~~l~~~g~~V~~i~~~~~~~~~~~l~~-~l~~~gv~i~~~~~v~~i~~~~~~--v~~v~~~~~~~g~~~~i~~D~  243 (319)
T 3cty_A          167 GAIAAISMSEYVKNVTIIEYMPKYMCENAYVQ-EIKKRNIPYIMNAQVTEIVGDGKK--VTGVKYKDRTTGEEKLIETDG  243 (319)
T ss_dssp             HHHHHHHHTTTBSEEEEECSSSSCCSCHHHHH-HHHHTTCCEECSEEEEEEEESSSS--EEEEEEEETTTCCEEEECCSE
T ss_pred             HHHHHHHHHhhCCcEEEEEcCCccCCCHHHHH-HHhcCCcEEEcCCeEEEEecCCce--EEEEEEEEcCCCceEEEecCE
Confidence            99999999999999999999988766555553 455789999999999999987531  445777643335456799999


Q ss_pred             EEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          297 LFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       297 vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      |++++|++|+.+++. .++.++++|++.||+ .++|+.|+|||+|||+..+++.+..|+.+|+.+|.+|.++|.++
T Consensus       244 vi~a~G~~p~~~~l~~~gl~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~  318 (319)
T 3cty_A          244 VFIYVGLIPQTSFLKDSGVKLDERGYIVVDS-RQRTSVPGVYAAGDVTSGNFAQIASAVGDGCKAALSLYSDSISK  318 (319)
T ss_dssp             EEECCCEEECCGGGTTSCCCBCTTSCBCCCT-TCBCSSTTEEECSTTBTTCCCCHHHHHHHHHHHHHHHHHHHTC-
T ss_pred             EEEeeCCccChHHHhhccccccCCccEeCCC-CCccCCCCEEEeecccCcchhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999998876 457788899999998 58899999999999997656889999999999999999999765

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=100.00  E-value=1.7e-42  Score=317.38  Aligned_cols=303  Identities=32%  Similarity=0.549  Sum_probs=244.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+      ..||.+.......+++..+ .....++.+++.+.++++++++
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~------~~gG~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~   73 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE------RFGGQILDTVDIENYISVP-KTEGQKLAGALKVHVDEYDVDV   73 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS------STTGGGGGCCEECCBTTBS-SEEHHHHHHHHHHHHHTSCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC------CCCceeccccccccccCcC-CCCHHHHHHHHHHHHHHcCCeE
Confidence            37999999999999999999999999999984      3577665443333333322 2356788899999999999999


Q ss_pred             EEe-eEEEEEecCC---cEEEEECCe-EEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          138 FTE-TVSKVDFKSR---PFKVFTDSK-SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       138 ~~~-~v~~i~~~~~---~~~v~~~~~-~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      +.+ +|..++.+.+   .+.+.++++ ++.||+||+|+|++|..|++||.+.+....++.+......  ...+++++|||
T Consensus        74 ~~~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~VvG  151 (310)
T 1fl2_A           74 IDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP--LFKGKRVAVIG  151 (310)
T ss_dssp             ECSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTBTTTEESCHHHHGG--GGBTCEEEEEC
T ss_pred             EccCEEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCcCCCCCCChhhcccceeEEeccCcHh--hcCCCEEEEEC
Confidence            999 8999987532   677777544 7999999999999999889999876655555554443333  44689999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                      +|.+|+|+|..|.+.+.+|+++++.+.+.....+.+++.+..||++++++++.++..+++.  +..+++.+..+++..++
T Consensus       152 ~G~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~l~~~~gv~v~~~~~v~~i~~~~~~--v~~v~~~~~~~g~~~~i  229 (310)
T 1fl2_A          152 GGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSK--VVGLEYRDRVSGDIHNI  229 (310)
T ss_dssp             CSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCTTEEEESSEEEEEEEESSSS--EEEEEEEETTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHhCCEEEEEEeCcccCccHHHHHHHhhCCCeEEecCCceEEEEcCCCc--EEEEEEEECCCCcEEEE
Confidence            9999999999999999999999999988666555544333379999999999999976432  55577775434555689


Q ss_pred             ecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          293 KVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ++|.+++++|++|+.+++...+.++++|++.||+ .++|+.|+|||+|||+..+++++..|+.+|+.+|.+|.++|.++.
T Consensus       230 ~~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~A~~~g~~aa~~i~~~l~~~~  308 (310)
T 1fl2_A          230 ELAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDA-KCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIRTK  308 (310)
T ss_dssp             ECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCT-TCBCSSTTEEECSTTBSCSSCCHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             EcCEEEEeeCCccCchHHhccccccCCCcEEcCC-CCccCCCCEEEeecccCCcchhhhhhHhhHHHHHHHHHHHHHHhc
Confidence            9999999999999998876447778899999999 678999999999999986667899999999999999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=100.00  E-value=1.5e-41  Score=313.84  Aligned_cols=304  Identities=27%  Similarity=0.405  Sum_probs=248.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC---CCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT---SDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    +....||.+...   .....++.++ .....++..++.+.+.++
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----~~~~~gG~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   80 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGMRQASVKIIE----SLPQLGGQLSALYPEKYIYDVAGFP-KIRAQELINNLKEQMAKF   80 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCHHHHHHCTTSEECCSTTCS-SEEHHHHHHHHHHHHTTS
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCCEEEEE----cCCCCCceehhcCCCceEeccCCCC-CCCHHHHHHHHHHHHHHh
Confidence            45899999999999999999999999999999    555677776321   1112344443 235789999999999999


Q ss_pred             CcEEEEe-eEEEEEecCC-cEEEEECCeEEEcCEEEEccCC---CCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcE
Q 016820          134 GTQIFTE-TVSKVDFKSR-PFKVFTDSKSVLADTVIVATGA---VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL  208 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~-~~~v~~~~~~~~~d~lvlA~G~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  208 (382)
                      +++++.+ +|..++.+++ .|.+.++++++.||+||+|+|.   .|+.|++||.+.+....++. .+.+..  ...++++
T Consensus        81 ~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p~~~~~~g~~~~~g~~~~~-~~~~~~--~~~~~~v  157 (332)
T 3lzw_A           81 DQTICLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKPRKLELENAEQYEGKNLHY-FVDDLQ--KFAGRRV  157 (332)
T ss_dssp             CCEEECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEECCCCCTTGGGGBTTTEES-SCSCGG--GGBTCEE
T ss_pred             CCcEEccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCCCCCCCCChhhccCceEEE-ecCCHH--HcCCCEE
Confidence            9999876 7999998876 7888888888999999999999   88989999988765555444 332222  4458999


Q ss_pred             EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCc
Q 016820          209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ  288 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~  288 (382)
                      +|||+|.+|+|+|..|.+.+.+|+++++.+.+.......+ .+++.||+++.++++.+++.+++   ...+.+.+...++
T Consensus       158 ~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~~~~~~~~-~l~~~gv~~~~~~~v~~i~~~~~---~~~v~~~~~~~g~  233 (332)
T 3lzw_A          158 AILGGGDSAVDWALMLEPIAKEVSIIHRRDKFRAHEHSVE-NLHASKVNVLTPFVPAELIGEDK---IEQLVLEEVKGDR  233 (332)
T ss_dssp             EEECSSHHHHHHHHHHTTTBSEEEEECSSSSCSSCHHHHH-HHHHSSCEEETTEEEEEEECSSS---CCEEEEEETTSCC
T ss_pred             EEECCCHhHHHHHHHHHhhCCeEEEEEecCcCCccHHHHH-HHhcCCeEEEeCceeeEEecCCc---eEEEEEEecCCCc
Confidence            9999999999999999999999999999998866555543 46778999999999999998764   3457777655556


Q ss_pred             eEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHHHHH
Q 016820          289 VSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       289 ~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~~i~  365 (382)
                      +.++++|.+++++|++|+.+++. .++.. ++|++.||+ +++|+.|||||+|||+..  .++.+..|+.+|+.+|.+|.
T Consensus       234 ~~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~~i~  311 (332)
T 3lzw_A          234 KEILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKS-TMETNIEGFFAAGDICTYEGKVNLIASGFGEAPTAVNNAK  311 (332)
T ss_dssp             EEEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCT-TSBCSSTTEEECGGGEECTTCCCCHHHHHHHHHHHHHHHH
T ss_pred             eEEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCC-CCceecCCEEEccceecCCCCcceEeeehhhHHHHHHHHH
Confidence            67899999999999999998876 45666 689999998 788999999999999842  37889999999999999999


Q ss_pred             HHHHHccCc
Q 016820          366 HYLQEIGSQ  374 (382)
Q Consensus       366 ~~l~~~~~~  374 (382)
                      +++.+++..
T Consensus       312 ~~l~~~~~~  320 (332)
T 3lzw_A          312 AYMDPKARV  320 (332)
T ss_dssp             HHHCTTSCS
T ss_pred             HhhChhhcc
Confidence            999876543

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=100.00  E-value=1.3e-40  Score=325.10  Aligned_cols=305  Identities=32%  Similarity=0.543  Sum_probs=250.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ...+||+|||||++|+++|..|++.|++|+|+|+      ..||.+.......+++..+ .....++.+++.+.++++|+
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~------~~GG~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~gv  282 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE------RFGGQVLDTVDIENYISVP-KTEGQKLAGALKAHVSDYDV  282 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS------STTGGGTTCSCBCCBTTBS-SBCHHHHHHHHHHHHHTSCE
T ss_pred             cCcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC------CCCCcccccccccccCCCC-CCCHHHHHHHHHHHHHHcCC
Confidence            3468999999999999999999999999999994      4677766544444444433 34678899999999999999


Q ss_pred             EEEEe-eEEEEEecC---CcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEE
Q 016820          136 QIFTE-TVSKVDFKS---RPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~---~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      +++.+ +|..++++.   +.+.+.+++ .++.||+||+|||.+|+.+++||.+.+....++.+..++..  ...+++|+|
T Consensus       283 ~v~~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~~~~~ipG~~~~~~~~v~~~~~~~~~--~~~~k~V~V  360 (521)
T 1hyu_A          283 DVIDSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKWRNMNVPGEDQYRTKGVTYCPHCDGP--LFKGKRVAV  360 (521)
T ss_dssp             EEECSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEECCCCCTTTTTTTTTTEECCTTCCGG--GGBTSEEEE
T ss_pred             EEEcCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCcCCCCCCChhhhcCceEEEeecCchh--hcCCCeEEE
Confidence            99999 899998653   367777654 47999999999999999999999877666555555444333  456899999


Q ss_pred             EcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820          211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV  289 (382)
Q Consensus       211 vG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~  289 (382)
                      ||+|.+|+|+|..|.+.+.+|+++.+.+.+.....+. +.+.+ .||++++++.+.++..+++.  +.++.+.+..+++.
T Consensus       361 iGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~~~~~l~-~~l~~~~gV~v~~~~~v~~i~~~~~~--v~~v~~~~~~~g~~  437 (521)
T 1hyu_A          361 IGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQ-DKVRSLKNVDIILNAQTTEVKGDGSK--VVGLEYRDRVSGDI  437 (521)
T ss_dssp             ECCSHHHHHHHHHHHHHBSEEEEECSSSSCCSCHHHH-HHHTTCTTEEEECSEEEEEEEECSSS--EEEEEEEETTTCCE
T ss_pred             ECCCHHHHHHHHHHHhhCCEEEEEEeCcccCcCHHHH-HHHhcCCCcEEEeCCEEEEEEcCCCc--EEEEEEEeCCCCce
Confidence            9999999999999999999999999999887665555 44555 79999999999999886432  55577765444555


Q ss_pred             EEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          290 SDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       290 ~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ..+++|.+++++|++|++.++...+.++++|++.||+ .++|+.|+|||+|||+..+++++..|+.+|..||.+|..+|.
T Consensus       438 ~~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~-~~~ts~p~VfA~GD~~~~~~~~~~~A~~~g~~aa~~i~~~L~  516 (521)
T 1hyu_A          438 HSVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDA-KCETSVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLI  516 (521)
T ss_dssp             EEEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCT-TCBCSSTTEEECSTTBCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCC-CCCCCCCCEEEeecccCCCcceeeehHHhHHHHHHHHHHHHH
Confidence            6899999999999999998887457778899999998 788999999999999987678999999999999999999998


Q ss_pred             HccC
Q 016820          370 EIGS  373 (382)
Q Consensus       370 ~~~~  373 (382)
                      +++.
T Consensus       517 ~~~~  520 (521)
T 1hyu_A          517 RTKI  520 (521)
T ss_dssp             HHSC
T ss_pred             hhhc
Confidence            7653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=100.00  E-value=9.2e-40  Score=302.50  Aligned_cols=310  Identities=26%  Similarity=0.339  Sum_probs=239.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC---cccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD---VENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      .++||+|||||++|+++|..|++.|++|+|||    +....||.+.....   ...++.++ .....++.+++.+.+.++
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie----~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~   78 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVD----PLPEPGGQLTALYPEKYIYDVAGFP-KVYAKDLVKGLVEQVAPF   78 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----SSSSSCHHHHHTCTTSEECCSTTCS-SEEHHHHHHHHHHHHGGG
T ss_pred             CcCcEEEECCCHHHHHHHHHHHhCCCCEEEEe----CCCCCCCeeeccCCCceeeccCCCC-CCCHHHHHHHHHHHHHHc
Confidence            35899999999999999999999999999999    44456776642211   12223332 245678889999999999


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEEccCC---CCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcE
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIVATGA---VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPL  208 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v  208 (382)
                      +++++.+ +|..++.+++.+.+.++++ ++.||+||+|+|.   .|+.++++|.+.+....++.+ +.+..  ...++++
T Consensus        79 ~~~~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~~~~~~~~~~-~~~~~--~~~~~~v  155 (335)
T 2zbw_A           79 NPVYSLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGEREFEGRGVYYA-VKSKA--EFQGKRV  155 (335)
T ss_dssp             CCEEEESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTTTBTTTEESS-CSCGG--GGTTCEE
T ss_pred             CCEEEeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhhccCcEEEEe-cCchh--hcCCCEE
Confidence            9999877 7999998877787877554 7999999999999   577778888766544333222 11111  3357999


Q ss_pred             EEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHH---HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820          209 AVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKI---MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV  285 (382)
Q Consensus       209 ~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~  285 (382)
                      +|||+|.+|+|+|..|.+.+.+|+++.+.+.+.....   .+++.+++.||+++.++.+.+++.++.   +..+.+....
T Consensus       156 ~viG~G~~g~e~a~~l~~~g~~V~~v~~~~~~~~~~~~~~~l~~~l~~~gv~v~~~~~v~~i~~~~~---~~~v~~~~~~  232 (335)
T 2zbw_A          156 LIVGGGDSAVDWALNLLDTARRITLIHRRPQFRAHEASVKELMKAHEEGRLEVLTPYELRRVEGDER---VRWAVVFHNQ  232 (335)
T ss_dssp             EEECSSHHHHHHHHHTTTTSSEEEEECSSSSCCSCHHHHHHHHHHHHTTSSEEETTEEEEEEEESSS---EEEEEEEETT
T ss_pred             EEECCCHHHHHHHHHHHhhCCEEEEEEcCCccCccHHHHHHHHhccccCCeEEecCCcceeEccCCC---eeEEEEEECC
Confidence            9999999999999999999999999999987743222   224556778999999999999998532   4457776432


Q ss_pred             CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHH
Q 016820          286 TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAAL  362 (382)
Q Consensus       286 ~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~  362 (382)
                      +++..++++|.+++++|++|+.+++. .++..+ +|++.||+ +++|+.|||||+|||+..  .++.+..|+.+|..+|.
T Consensus       233 ~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~aa~  310 (335)
T 2zbw_A          233 TQEELALEVDAVLILAGYITKLGPLANWGLALE-KNKIKVDT-TMATSIPGVYACGDIVTYPGKLPLIVLGFGEAAIAAN  310 (335)
T ss_dssp             TCCEEEEECSEEEECCCEEEECGGGGGSCCCEE-TTEEECCT-TCBCSSTTEEECSTTEECTTCCCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCEEEEeecCCCCchHhhhcceecc-CCeeeeCC-CCCCCCCCEEEeccccccCcchhhhhhhHHHHHHHHH
Confidence            35557899999999999999988776 356665 78999998 788999999999999853  25789999999999999


Q ss_pred             HHHHHHHHccCcccccc
Q 016820          363 EAEHYLQEIGSQEDKSE  379 (382)
Q Consensus       363 ~i~~~l~~~~~~~~~~~  379 (382)
                      +|..+|.+....+....
T Consensus       311 ~i~~~l~~~~~~~~~~~  327 (335)
T 2zbw_A          311 HAAAYANPALKVNPGHS  327 (335)
T ss_dssp             HHHHHHCTTSCSSCCCG
T ss_pred             HHHHHhhhhhccCCccc
Confidence            99999987766554433

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=100.00  E-value=8.5e-40  Score=297.30  Aligned_cols=288  Identities=22%  Similarity=0.311  Sum_probs=232.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc-CcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF-GTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi~  136 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+.    .. .+.+..  ....++.. ......++.+++.+.+.++ +++
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~----~~-~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~   73 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGRARKNILLVDAG----ER-RNRFAS--HSHGFLGQ-DGKAPGEIIAEARRQIERYPTIH   73 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECC----CC-GGGGCS--CCCSSTTC-TTCCHHHHHHHHHHHHTTCTTEE
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCEEEEeCC----Cc-ccccch--hhcCCcCC-CCCCHHHHHHHHHHHHHhcCCeE
Confidence            379999999999999999999999999999952    11 121111  11223333 2467789999999999887 789


Q ss_pred             EEEeeEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ++.++|+.++.+++.+.+.+++ .++.||+||+|+|.+|+.|.+||.+.++....+.+.+.+..  ...+++++|||+|.
T Consensus        74 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~v~vvG~G~  151 (297)
T 3fbs_A           74 WVEGRVTDAKGSFGEFIVEIDGGRRETAGRLILAMGVTDELPEIAGLRERWGSAVFHCPYCHGY--ELDQGKIGVIAASP  151 (297)
T ss_dssp             EEESCEEEEEEETTEEEEEETTSCEEEEEEEEECCCCEEECCCCBTTGGGBTTTEESCHHHHTG--GGTTCEEEEECCST
T ss_pred             EEEeEEEEEEEcCCeEEEEECCCCEEEcCEEEECCCCCCCCCCCCCchhhcCCeeEEcccCcch--hhcCCEEEEEecCc
Confidence            8888999999988888888755 46999999999999999999999887766666666655554  55689999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                      +|+|+|..|.+.+ +|+++.+.+. .....+ .+.+++.||+++. +++.++..++      .+.+.+   +  .++++|
T Consensus       152 ~~~e~a~~l~~~g-~v~~v~~~~~-~~~~~~-~~~l~~~gv~i~~-~~v~~i~~~~------~v~~~~---g--~~~~~D  216 (297)
T 3fbs_A          152 MAIHHALMLPDWG-ETTFFTNGIV-EPDADQ-HALLAARGVRVET-TRIREIAGHA------DVVLAD---G--RSIALA  216 (297)
T ss_dssp             THHHHHHHGGGTS-EEEEECTTTC-CCCHHH-HHHHHHTTCEEEC-SCEEEEETTE------EEEETT---S--CEEEES
T ss_pred             cHHHHHHHhhhcC-cEEEEECCCC-CCCHHH-HHHHHHCCcEEEc-ceeeeeecCC------eEEeCC---C--CEEEEE
Confidence            9999999999998 9999998776 334444 4667889999995 8899998654      166543   3  579999


Q ss_pred             eEEEeeCCCCChhhhc-cccccc--CCC-ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          296 GLFFAIGHEPATKFVD-GQLDLH--SDG-YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       296 ~vi~~~G~~p~~~~~~-~~~~~~--~~g-~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      .+++++|++|+.+++. .++..+  +.| ++.+|+ +++|+.|||||+|||+.. ++.+..|+.+|+.+|.+|.++|.+.
T Consensus       217 ~vi~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~-~~~t~~~~vya~GD~~~~-~~~~~~A~~~g~~aa~~i~~~l~~~  294 (297)
T 3fbs_A          217 GLFTQPKLRITVDWIEKLGCAVEEGPMGSTIVTDP-MKQTTARGIFACGDVARP-AGSVALAVGDGAMAGAAAHRSILFP  294 (297)
T ss_dssp             EEEECCEEECCCSCHHHHTCCEEEETTEEEECCCT-TCBCSSTTEEECSGGGCT-TCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             EEEEccCcccCchhHHhcCCccccCCCCceEEeCC-CCccCCCCEEEEeecCCc-hHHHHHHHHhHHHHHHHHHHHHhhh
Confidence            9999999999988776 455555  467 899998 688999999999999974 7899999999999999999999865


Q ss_pred             c
Q 016820          372 G  372 (382)
Q Consensus       372 ~  372 (382)
                      .
T Consensus       295 ~  295 (297)
T 3fbs_A          295 E  295 (297)
T ss_dssp             -
T ss_pred             h
Confidence            4

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=100.00  E-value=1.7e-38  Score=296.98  Aligned_cols=307  Identities=24%  Similarity=0.324  Sum_probs=232.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC---cccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD---VENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    +....||.+.....   ...++.++ .....++.+++.+.+.++
T Consensus        13 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie----~~~~~gg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~   87 (360)
T 3ab1_A           13 DMRDLTIIGGGPTGIFAAFQCGMNNISCRIIE----SMPQLGGQLAALYPEKHIYDVAGFP-EVPAIDLVESLWAQAERY   87 (360)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCHHHHHTCTTSEECCSTTCS-SEEHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCCEEEEe----cCCCCCCcccccCCCcccccCCCCC-CCCHHHHHHHHHHHHHHh
Confidence            35899999999999999999999999999999    44456776642211   12233332 245688899999999999


Q ss_pred             CcEEEEe-eEEEEEecCC-cEEEEECCe-EEEcCEEEEccCC---CCcCCCCCC-CccccCCCcceeeeccCCCCCCCCC
Q 016820          134 GTQIFTE-TVSKVDFKSR-PFKVFTDSK-SVLADTVIVATGA---VAKKLQFPG-SDAFWNRGISACAVCDGAAPIFRDK  206 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~-~~~v~~~~~-~~~~d~lvlA~G~---~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~  206 (382)
                      +++++.+ +|+.++.+++ .+.+.++++ ++.||+||+|+|.   .|..++++| .+.+....++.+ +.+..  ...++
T Consensus        88 ~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~-~~~~~--~~~~~  164 (360)
T 3ab1_A           88 NPDVVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA-VKSVE--DFKGK  164 (360)
T ss_dssp             CCEEECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS-CSCGG--GGTTC
T ss_pred             CCEEEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe-cCCHH--HcCCC
Confidence            9999877 7999998765 677777554 7999999999999   566677888 554443333322 11111  34579


Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHH---HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQ---NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~---~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      +++|||+|.+|+|+|..|.+.+.+|+++++.+.+.......   .+.+++.||+++.++++.++..++++  +..+.+..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~--v~~v~~~~  242 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIKNAASVTLVHRGHEFQGHGKTAHEVERARANGTIDVYLETEVASIEESNGV--LTRVHLRS  242 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTTTSSEEEEECSSSSCSSCSHHHHSSHHHHHHTSEEEESSEEEEEEEEETTE--EEEEEEEE
T ss_pred             cEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCCCCCCHHHHHHHHHHhhcCceEEEcCcCHHHhccCCCc--eEEEEEEe
Confidence            99999999999999999999999999999988764332221   23455678999999999999987542  44566652


Q ss_pred             ccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHH
Q 016820          284 LVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMA  360 (382)
Q Consensus       284 ~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~a  360 (382)
                       .+++...+++|.+++++|++|+.+++. .++.++ +|++.||+ +++|+.|+|||+|||+..  .++.+..|+.||..+
T Consensus       243 -~~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~-~~~t~~~~vya~GD~~~~~~~~~~~~~A~~~g~~a  319 (360)
T 3ab1_A          243 -SDGSKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDS-HMKTSVDGLYAAGDIAYYPGKLKIIQTGLSEATMA  319 (360)
T ss_dssp             -TTCCEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCT-TSBCSSTTEEECSTTEECTTCCCSHHHHHHHHHHH
T ss_pred             -cCCCeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecC-CCcCCCCCEEEecCccCCCCccceeehhHHHHHHH
Confidence             224446899999999999999988776 356665 79999999 788999999999999853  367899999999999


Q ss_pred             HHHHHHHHHHccCccc
Q 016820          361 ALEAEHYLQEIGSQED  376 (382)
Q Consensus       361 a~~i~~~l~~~~~~~~  376 (382)
                      |.+|..++.+....++
T Consensus       320 a~~i~~~l~~~~~~~~  335 (360)
T 3ab1_A          320 VRHSLSYIKPGEKIRN  335 (360)
T ss_dssp             HHHHHHHHSCC-----
T ss_pred             HHHHHhhcCCccccCc
Confidence            9999999987665444

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=100.00  E-value=5.8e-39  Score=293.17  Aligned_cols=293  Identities=21%  Similarity=0.376  Sum_probs=224.7

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC--CCCChHHHHHHHHHHHHHc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP--QGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  133 (382)
                      +..+||+||||||||++||..|++.|++|+|||+.     ..||.+.     .++++++  ..+...++.+...+.+.++
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~-----~~gg~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~   73 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGRARKQIALFDNN-----TNRNRVT-----QNSHGFITRDGIKPEEFKEIGLNEVMKY   73 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECS-----CCGGGGS-----SCBCCSTTCTTBCHHHHHHHHHHHHTTS
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-----CCCCeee-----eecCCccCCCCCCHHHHHHHHHHHHHhc
Confidence            45699999999999999999999999999999952     3455442     1233332  3467788888777777766


Q ss_pred             C-cEEEEeeEEEEEec-CCcEEEEE-CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEE
Q 016820          134 G-TQIFTETVSKVDFK-SRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       134 g-i~~~~~~v~~i~~~-~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      + +.++..++..++.. .+.+.+.+ ++.++.||+||+|||++|+.|++||.+.++...+..+...+..  ...+++++|
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p~~p~i~G~~~~~~~~v~~~~~~~~~--~~~~~~~~V  151 (304)
T 4fk1_A           74 PSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQEEFPSIPNVREYYGKSLFSCPYCDGW--ELKDQPLII  151 (304)
T ss_dssp             TTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEEECCSCTTHHHHBTTTEESCHHHHSG--GGTTSCEEE
T ss_pred             CCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCccccccccCccccccceeeeccccchh--HhcCCceee
Confidence            5 55666677777654 44566665 4567999999999999999999999887777777777666665  556788999


Q ss_pred             EcCCch-HHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce
Q 016820          211 IGGGDS-AMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV  289 (382)
Q Consensus       211 vG~G~~-a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~  289 (382)
                      ||+|.. ++++|..+.+.+.+|+++.+.+.+.  ..+. +.+++.|+.++.+ .+..+..+++  .+..+++.     ++
T Consensus       152 IggG~~~~~e~a~~~~~~~~~v~i~~~~~~~~--~~~~-~~l~~~g~~~~~~-~v~~~~~~~~--~~~~v~~~-----~g  220 (304)
T 4fk1_A          152 ISENEDHTLHMTKLVYNWSTDLVIATNGNELS--QTIM-DELSNKNIPVITE-SIRTLQGEGG--YLKKVEFH-----SG  220 (304)
T ss_dssp             ECCSHHHHHHHHHHHTTTCSCEEEECSSCCCC--HHHH-HHHHTTTCCEECS-CEEEEESGGG--CCCEEEET-----TS
T ss_pred             ecCCCchhhhHHHHHHhCCceEEEEeccccch--hhhh-hhhhccceeEeee-eEEEeecCCC--eeeeeecc-----cc
Confidence            988865 6788999999999999998876653  3333 4577889999866 4777776543  24445543     33


Q ss_pred             EEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHH
Q 016820          290 SDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       290 ~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      .++++|.++++.|.+|+..++. .++.++++|+|.||+ +++|+.|||||+|||++..++++..|+.+|+.||.+|.++|
T Consensus       221 ~~i~~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~-~~~Ts~p~IyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L  299 (304)
T 4fk1_A          221 LRIERAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDD-FGRTSEKNIYLAGETTTQGPSSLIIAASQGNKAAIAINSDI  299 (304)
T ss_dssp             CEECCCEEEECCEEECSSCHHHHTTCCCCTTSSSCSST-TCBCSSTTEEECSHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeecceeeeeccccCChhhhhcCeEECCCCCEEECc-CCccCCCCEEEEeccCCCcchHHHHHHHHHHHHHHHHHHHH
Confidence            6788998888887776665554 678899999999998 78999999999999987667789999999999999999999


Q ss_pred             HHcc
Q 016820          369 QEIG  372 (382)
Q Consensus       369 ~~~~  372 (382)
                      .+++
T Consensus       300 ~~e~  303 (304)
T 4fk1_A          300 TDER  303 (304)
T ss_dssp             HHHH
T ss_pred             hhcC
Confidence            8754

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=100.00  E-value=2.9e-38  Score=294.54  Aligned_cols=292  Identities=18%  Similarity=0.298  Sum_probs=219.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC---------CCcccCCCCC------CCCChHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT---------SDVENFPGFP------QGILGGDL  122 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~---------~~~~~~~~~~------~~~~~~~~  122 (382)
                      .+||+|||||++|+++|..|++.|++|+|||    +...+||.|...         .....+++++      ......++
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie----~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRRSGLSYVILD----AEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEV   78 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHSSCCEEEEC----CSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEE----CCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHH
Confidence            4799999999999999999999999999999    444566665421         1112222222      12345789


Q ss_pred             HHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCC--CCcCCCCCCCccccCCCcceeeeccC
Q 016820          123 MDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGA--VAKKLQFPGSDAFWNRGISACAVCDG  198 (382)
Q Consensus       123 ~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~--~~~~~~~~g~~~~~~~~~~~~~~~~~  198 (382)
                      .+++.+.+++++++++.+ +|++++.+++.|. +.++++++.||+||+|+|.  .|+.|.++|...+....++.+.+...
T Consensus        79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  158 (357)
T 4a9w_A           79 LAYLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYSTP  158 (357)
T ss_dssp             HHHHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCCS
T ss_pred             HHHHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCCh
Confidence            999999999999999888 7999999998888 8888889999999999996  67778999988766666666555555


Q ss_pred             CCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC-CCcch----HHH----HHHhcc-----------------
Q 016820          199 AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD-SFRAS----KIM----QNRALT-----------------  252 (382)
Q Consensus       199 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~-~~~~~----~~~----~~~~l~-----------------  252 (382)
                      .  ...+++++|||+|.+|+|+|..|.+.+ +|+++.+.. .+...    ..+    .+++.+                 
T Consensus       159 ~--~~~~~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (357)
T 4a9w_A          159 A--PFAGMRVAIIGGGNSGAQILAEVSTVA-ETTWITQHEPAFLADDVDGRVLFERATERWKAQQEGREPDLPPGGFGDI  235 (357)
T ss_dssp             G--GGTTSEEEEECCSHHHHHHHHHHTTTS-EEEEECSSCCCBCCTTCCTHHHHTC----------------------CB
T ss_pred             h--hcCCCEEEEECCCcCHHHHHHHHHhhC-CEEEEECCCCeecchhhcCccHHHHHHHHHhccccccCCCcccccccCc
Confidence            4  556899999999999999999999998 699998874 33211    111    111111                 


Q ss_pred             ----------CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCc
Q 016820          253 ----------NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGY  321 (382)
Q Consensus       253 ----------~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~  321 (382)
                                +.|+ +..+..+.+++.+.       +.+.     ++.++++|.|++++|++|+++++. .++. +++|+
T Consensus       236 ~~~~~~~~~~~~g~-i~~~~~v~~~~~~~-------v~~~-----~g~~i~~D~vi~a~G~~p~~~~l~~~gl~-~~~G~  301 (357)
T 4a9w_A          236 VMVPPVLDARARGV-LAAVPPPARFSPTG-------MQWA-----DGTERAFDAVIWCTGFRPALSHLKGLDLV-TPQGQ  301 (357)
T ss_dssp             CCCHHHHHHHHTTC-CCEECCCSEEETTE-------EECT-----TSCEEECSEEEECCCBCCCCGGGTTTTCB-CTTSC
T ss_pred             ccChhHHHHHhcCc-eEEecCcceEeCCe-------eEEC-----CCCEecCCEEEECCCcCCCCcccCccccc-CCCCC
Confidence                      1222 23334444444322       4433     236799999999999999988886 4666 78899


Q ss_pred             eeeCCC-CCcCCCCceEEec--ccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          322 IITKPG-TTHTSVPGVFAAG--DVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       322 i~vd~~-~~~t~~~~vya~G--D~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +.||+. +++|+.|||||+|  ||....++.+..|+.+|+.+|.+|.++|.+
T Consensus       302 i~vd~~~l~~t~~~~vya~Gd~d~~~~~~~~~~~A~~~g~~~a~~i~~~l~g  353 (357)
T 4a9w_A          302 VEVDGSGLRALAVPSVWLLGYGDWNGMASATLIGVTRYAREAVRQVTAYCAD  353 (357)
T ss_dssp             BCBCTTSCBBSSCTTEEECSSCGGGSTTCSSTTTHHHHHHHHHHHHHHHTC-
T ss_pred             ccccCCcccCCCCCCeEEeccccccccchhhhhhhHHHHHHHHHHHHHHHHh
Confidence            999994 3899999999999  666545678888999999999999999987

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=100.00  E-value=5.7e-39  Score=307.03  Aligned_cols=287  Identities=19%  Similarity=0.207  Sum_probs=214.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ++|||||||+||+++|..|+++|  .+|+|||+..   ...+..+..+...   ...... ....+......+.++.+++
T Consensus         1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~---~~~~~~~~l~~~~---~~~~~~-~~~~~~~~~~~~~~~~~i~   73 (437)
T 4eqs_A            1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDR---DMSFANCALPYVI---GEVVED-RRYALAYTPEKFYDRKQIT   73 (437)
T ss_dssp             CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSS---CSSBCGGGHHHHH---TTSSCC-GGGTBCCCHHHHHHHHCCE
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCC---CCCCCcchhHHHH---cCCccc-hhhhhhcCHHHHHHhcCCE
Confidence            36999999999999999999998  5799999532   1111111100000   000000 0000111122345667999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECC----eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDS----KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~----~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      ++.+ +|+.|+.+.+.+.+....    .++.||+||+|||++|+.|+++|...+..+.+.++..+........+++++||
T Consensus        74 ~~~~~~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p~~p~i~g~~~~~~~~~~~~~~l~~~~~~~~~~~vvVi  153 (437)
T 4eqs_A           74 VKTYHEVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASANSLGFESDITFTLRNLEDTDAIDQFIKANQVDKVLVV  153 (437)
T ss_dssp             EEETEEEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEECCCCCCCTTEECCSSHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             EEeCCeEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCccccccccCceEEeeccHHHHHHHHHhhhccCCcEEEEE
Confidence            9887 799999988877766432    35899999999999999999999777666666655544433223347899999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT  286 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~  286 (382)
                      |+|.+|+|+|..+.++|.+||++++.+.+..     ......+.+++.||+++.++.+++++.+.       +.+++   
T Consensus       154 GgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~~~d~~~~~~~~~~l~~~gV~i~~~~~v~~~~~~~-------v~~~~---  223 (437)
T 4eqs_A          154 GAGYVSLEVLENLYERGLHPTLIHRSDKINKLMDADMNQPILDELDKREIPYRLNEEINAINGNE-------ITFKS---  223 (437)
T ss_dssp             CCSHHHHHHHHHHHHHTCEEEEEESSSCCSTTSCGGGGHHHHHHHHHTTCCEEESCCEEEEETTE-------EEETT---
T ss_pred             CCccchhhhHHHHHhcCCcceeeeeeccccccccchhHHHHHHHhhccceEEEeccEEEEecCCe-------eeecC---
Confidence            9999999999999999999999999987732     22333467888999999999999887654       55543   


Q ss_pred             CceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---------hhHHHHHHhh
Q 016820          287 GQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---------YRQAVTAAGT  356 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~~~a~~~  356 (382)
                      +  ..+++|.+++++|.+|++.+++ .++.++++|+|.||+ +++|++|||||+|||+..+         ++.++.|..|
T Consensus       224 g--~~~~~D~vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~-~~~Ts~p~IyA~GDva~~~~~~~~~~~~~~~a~~A~~~  300 (437)
T 4eqs_A          224 G--KVEHYDMIIEGVGTHPNSKFIESSNIKLDRKGFIPVND-KFETNVPNIYAIGDIATSHYRHVDLPASVPLAWGAHRA  300 (437)
T ss_dssp             S--CEEECSEEEECCCEEESCGGGTTSSCCCCTTSCEECCT-TCBCSSTTEEECGGGEEEEBSSSSSEECCCSHHHHHHH
T ss_pred             C--eEEeeeeEEEEeceecCcHHHHhhhhhhccCCcEecCC-CccCCCCCEEEEEEccCcccccCCccccchhHHHHHHH
Confidence            3  5789999999999999998876 578889999999998 7899999999999998532         3568999999


Q ss_pred             HHHHHHHHH
Q 016820          357 GCMAALEAE  365 (382)
Q Consensus       357 g~~aa~~i~  365 (382)
                      |+.+|+||+
T Consensus       301 g~~~a~ni~  309 (437)
T 4eqs_A          301 ASIVAEQIA  309 (437)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            999999986

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=100.00  E-value=1e-37  Score=300.17  Aligned_cols=288  Identities=20%  Similarity=0.221  Sum_probs=210.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      +||+|||||++|+++|..|++.  |.+|+|||+........++.....      .+  ......++.....+.+.+++++
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~~gi~   74 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYLSGGLSAYF------NH--TINELHEARYITEEELRRQKIQ   74 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSCCC------------------------CCCCHHHHHHTTEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCcccCccchhhh------cC--CCCCHHHhhcCCHHHHHHCCCE
Confidence            6999999999999999999999  899999995422111111111100      00  0001122222244556778999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE--CCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEE
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT--DSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~--~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      ++.+ +|..++.+++.+.+..  ++.++.||+||+|||++|..|++||.+.   +..+...........  ...+++++|
T Consensus        75 ~~~~~~V~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~vvV  152 (452)
T 3oc4_A           75 LLLNREVVAMDVENQLIAWTRKEEQQWYSYDKLILATGASQFSTQIRGSQTEKLLKYKFLSGALAAVPL--LENSQTVAV  152 (452)
T ss_dssp             EECSCEEEEEETTTTEEEEEETTEEEEEECSEEEECCCCCBCCCCCBTTTCTTEEEGGGCC----CCHH--HHTCSEEEE
T ss_pred             EEECCEEEEEECCCCEEEEEecCceEEEEcCEEEECCCcccCCCCCCCCCCCCEEEeCCHHHHHHHHHH--HhcCCEEEE
Confidence            9876 7999999988877742  3456999999999999999999998764   111111111111111  235789999


Q ss_pred             EcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       211 vG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      ||+|.+|+|+|..|.+.|.+|+++.+.+.+...      .....+.+++.||+++.++++.+++..+++     +.+.. 
T Consensus       153 iGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-----v~v~~-  226 (452)
T 3oc4_A          153 IGAGPIGMEAIDFLVKMKKTVHVFESLENLLPKYFDKEMVAEVQKSLEKQAVIFHFEETVLGIEETANG-----IVLET-  226 (452)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTCCHHHHHHHHHHHHTTTEEEEETCCEEEEEECSSC-----EEEEE-
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEEccCccccccCCHHHHHHHHHHHHHcCCEEEeCCEEEEEEccCCe-----EEEEE-
Confidence            999999999999999999999999998876421      223346788899999999999999965543     33333 


Q ss_pred             cCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCch---------hhHHHHHHh
Q 016820          285 VTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---------YRQAVTAAG  355 (382)
Q Consensus       285 ~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~~~a~~  355 (382)
                        +++ ++++|.|++|+|++|++.++...+.++++|++.||+ +++|+.|+|||+|||+..+         ++.+..|..
T Consensus       227 --~~g-~i~aD~Vv~A~G~~p~~~~l~~~~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~~~~~~~A~~  302 (452)
T 3oc4_A          227 --SEQ-EISCDSGIFALNLHPQLAYLDKKIQRNLDQTIAVDA-YLQTSVPNVFAIGDCISVMNEPVAETFYAPLVNNAVR  302 (452)
T ss_dssp             --SSC-EEEESEEEECSCCBCCCSSCCTTSCBCTTSCBCCCT-TCBCSSTTEEECGGGBCEEEGGGTEEECCCCHHHHHH
T ss_pred             --CCC-EEEeCEEEECcCCCCChHHHHhhhccCCCCCEEECc-CccCCCCCEEEEEeeEEeccccCCceeecchHHHHHH
Confidence              223 799999999999999999887557788899999998 7899999999999999743         258899999


Q ss_pred             hHHHHHHHHHH
Q 016820          356 TGCMAALEAEH  366 (382)
Q Consensus       356 ~g~~aa~~i~~  366 (382)
                      ||+.+|.+|..
T Consensus       303 ~g~~aa~~i~g  313 (452)
T 3oc4_A          303 TGLVVANNLEE  313 (452)
T ss_dssp             HHHHHTTSSSS
T ss_pred             HHHHHHHHhcC
Confidence            99999999864

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=100.00  E-value=4.9e-36  Score=290.58  Aligned_cols=294  Identities=21%  Similarity=0.180  Sum_probs=217.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc------------------c--cCCCCCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV------------------E--NFPGFPQ  115 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~------------------~--~~~~~~~  115 (382)
                      +..+||+|||||++|+++|..|+++|++|+|||+    . ..||.|....+.                  .  .++....
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~----~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~   92 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAELGARAAVVES----H-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEG   92 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHTTCCEEEEES----S-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEec----C-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCC
Confidence            4568999999999999999999999999999994    2 567765432110                  0  1111111


Q ss_pred             CCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC---CCCC
Q 016820          116 GILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL---QFPG  181 (382)
Q Consensus       116 ~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~---~~~g  181 (382)
                      ......+.++           +...+++.+++++.+++..++...  +.+..++.++.||+||+|||++|..|   ++||
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~--~~v~~~g~~~~~d~lviAtG~~p~~p~~~~i~G  170 (478)
T 3dk9_A           93 KFNWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPK--PTIEVSGKKYTAPHILIATGGMPSTPHESQIPG  170 (478)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSS--CEEEETTEEEECSCEEECCCEEECCCCTTTSTT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCe--EEEEECCEEEEeeEEEEccCCCCCCCCcCCCCC
Confidence            2333333333           344456679999999877776543  45556778899999999999999998   8898


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCc
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKI  256 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv  256 (382)
                      .+...     .+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..     ......+.+++.||
T Consensus       171 ~~~~~-----~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~gv  243 (478)
T 3dk9_A          171 ASLGI-----TSDGFFQL--EELPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGV  243 (478)
T ss_dssp             GGGSB-----CHHHHTTC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTC
T ss_pred             CceeE-----chHHhhch--hhcCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccccccCHHHHHHHHHHHHHCCC
Confidence            76211     11111112  23478999999999999999999999999999999887532     12223466788999


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCc--eEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ--VSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~--~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t  331 (382)
                      +++.++.+.+++.++++.. ..+.+.+...++  +..+++|.|++++|++|++..+  . .++.++++|++.||+ +++|
T Consensus       244 ~i~~~~~v~~i~~~~~~~~-~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t  321 (478)
T 3dk9_A          244 EVLKFSQVKEVKKTLSGLE-VSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDE-FQNT  321 (478)
T ss_dssp             EEETTEEEEEEEECSSSEE-EEEEECCTTSCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCT-TCBC
T ss_pred             EEEeCCEEEEEEEcCCCcE-EEEEEccCCCCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCC-Cccc
Confidence            9999999999998765411 123343211122  2679999999999999999843  2 578888999999998 7899


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +.|||||+|||++ .++.++.|..||+.+|.+|..
T Consensus       322 ~~~~IyA~GD~~~-~~~~~~~A~~~g~~aa~~i~~  355 (478)
T 3dk9_A          322 NVKGIYAVGDVCG-KALLTPVAIAAGRKLAHRLFE  355 (478)
T ss_dssp             SSTTEEECGGGGC-SSCCHHHHHHHHHHHHHHHHS
T ss_pred             CCCCEEEEEecCC-CCccHhHHHHHHHHHHHHHcC
Confidence            9999999999996 367899999999999999874

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=100.00  E-value=1.8e-36  Score=293.27  Aligned_cols=295  Identities=19%  Similarity=0.216  Sum_probs=217.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc-----------------cC--CCCC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE-----------------NF--PGFP---  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~-----------------~~--~~~~---  114 (382)
                      .++||+|||||++|+++|..|+++|++|+|||    +...+||.|.......                 .+  .+++   
T Consensus         5 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE----~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~   80 (474)
T 1zmd_A            5 IDADVTVIGSGPGGYVAAIKAAQLGFKTVCIE----KNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSE   80 (474)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----CSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEe----CCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCC
Confidence            45899999999999999999999999999999    4446777654321100                 00  0110   


Q ss_pred             CCCChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCC
Q 016820          115 QGILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       115 ~~~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      ......++..           .+.+.+++.+++++.+++..++  .+.+.+.+.+   .++.||+||+|||++|..|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~gg~~~~~~d~lViAtGs~p~~p~i~  158 (474)
T 1zmd_A           81 VRLNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITG--KNQVTATKADGGTQVIDTKNILIATGSEVTPFPGI  158 (474)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEE--TTEEEEECTTSCEEEEEEEEEEECCCEEECCCTTC
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEecCCCcEEEEeCEEEECCCCCCCCCCCC
Confidence            0122333322           2345567789999999876665  4567776543   4699999999999999999888


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCC
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNP  254 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~  254 (382)
                      |.+..   .+.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.
T Consensus       159 g~~~~---~v~t~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~  233 (474)
T 1zmd_A          159 TIDED---TIVSSTGALSL--KKVPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGGVGIDMEISKNFQRILQKQ  233 (474)
T ss_dssp             CCCSS---SEECHHHHTTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCcC---cEEcHHHHhhc--cccCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCCcccCHHHHHHHHHHHHHC
Confidence            86541   11122111122  23468999999999999999999999999999999887633   1   22234567788


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh--hc-ccccccCCCceeeCCCCCcC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF--VD-GQLDLHSDGYIITKPGTTHT  331 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~--~~-~~~~~~~~g~i~vd~~~~~t  331 (382)
                      ||++++++++.+++.++++.  ..+.+.....+++.++++|.|++++|++|++.+  ++ .++.++++|++.||+ .++|
T Consensus       234 Gv~i~~~~~v~~i~~~~~~~--~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t  310 (474)
T 1zmd_A          234 GFKFKLNTKVTGATKKSDGK--IDVSIEAASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNT-RFQT  310 (474)
T ss_dssp             TCEEECSEEEEEEEECTTSC--EEEEEEETTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCT-TCBC
T ss_pred             CCEEEeCceEEEEEEcCCce--EEEEEEecCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECc-CCcc
Confidence            99999999999999876531  123443222244568999999999999999986  33 477788889999999 6889


Q ss_pred             CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          332 SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       332 ~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +.|+|||+|||+.. ++.++.|..||+.+|.+|..
T Consensus       311 ~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~  344 (474)
T 1zmd_A          311 KIPNIYAIGDVVAG-PMLAHKAEDEGIICVEGMAG  344 (474)
T ss_dssp             SSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEeeecCCC-CccHHHHHHHHHHHHHHhcC
Confidence            99999999999974 57888999999999999974

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.3e-36  Score=292.61  Aligned_cols=295  Identities=23%  Similarity=0.264  Sum_probs=217.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-------------------ccC--CCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-------------------ENF--PGFPQ  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-------------------~~~--~~~~~  115 (382)
                      .++||+|||||++|+++|..|++.|++|+|||    +....||.|....+.                   ..+  .....
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liE----k~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~   99 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVE----KRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANP   99 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEE----SSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCC
Confidence            45899999999999999999999999999999    445678875432111                   000  00001


Q ss_pred             CCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCC
Q 016820          116 GILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       116 ~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      ......+.           ..+...+++.+++++.+++..++  .+.+.+.+.+   .++.||+||+|||++|  +.+||
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lViATGs~p--~~ipg  175 (491)
T 3urh_A          100 KLNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLG--QGKVSVTNEKGEEQVLEAKNVVIATGSDV--AGIPG  175 (491)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECS--SSEEEEECTTSCEEEEECSEEEECCCEEC--CCBTT
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEec--CCEEEEEeCCCceEEEEeCEEEEccCCCC--CCCCC
Confidence            12222222           22344556779999999876654  4456666544   3699999999999986  45677


Q ss_pred             Ccc-ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCC
Q 016820          182 SDA-FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPK  255 (382)
Q Consensus       182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~g  255 (382)
                      .+. +....++.+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~g  253 (491)
T 3urh_A          176 VEVAFDEKTIVSSTGALAL--EKVPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLDTILGGMDGEVAKQLQRMLTKQG  253 (491)
T ss_dssp             BCCCCCSSSEECHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTT
T ss_pred             cccccCCeeEEehhHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccccccccCCHHHHHHHHHHHHhCC
Confidence            653 222333444433433  44579999999999999999999999999999999887642     1222345677889


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |+++.++++.+++.++++   ..+.+.+...++..++++|.|++|+|++|+..++  . .++.++++|++.||+ .++|+
T Consensus       254 V~v~~~~~v~~i~~~~~~---~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~  329 (491)
T 3urh_A          254 IDFKLGAKVTGAVKSGDG---AKVTFEPVKGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDR-HFQTS  329 (491)
T ss_dssp             CEEECSEEEEEEEEETTE---EEEEEEETTSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCT-TCBCS
T ss_pred             CEEEECCeEEEEEEeCCE---EEEEEEecCCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECC-CCCCC
Confidence            999999999999987763   2355554222444689999999999999999864  2 578888999999998 78899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      .|+|||+|||++. ++.+..|..||+.+|.+|..
T Consensus       330 ~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g  362 (491)
T 3urh_A          330 IAGVYAIGDVVRG-PMLAHKAEDEGVAVAEIIAG  362 (491)
T ss_dssp             STTEEECGGGSSS-CCCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEecCCC-ccchhHHHHHHHHHHHHHcC
Confidence            9999999999964 58899999999999999874

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=100.00  E-value=5.4e-36  Score=290.83  Aligned_cols=299  Identities=18%  Similarity=0.174  Sum_probs=217.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----CCCCCCcceecCCCc------------------ccC--CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----NDIAPGGQLTTTSDV------------------ENF--PG  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~~~~~gg~~~~~~~~------------------~~~--~~  112 (382)
                      .++||+|||||++|+++|..|+++|.+|+|||+...    .....||.|....+.                  ..+  ..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~~~   84 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGWEV   84 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCccc
Confidence            468999999999999999999999999999995211    134678876533211                  011  00


Q ss_pred             -CCCCCChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCC
Q 016820          113 -FPQGILGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       113 -~~~~~~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~  177 (382)
                       .+.......+.++.           ...+++.+++++.+++..++  .+.+.+.+++   .++.||+||+|||++|+.|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~--~~~v~v~~~~g~~~~~~~d~lViATGs~p~~p  162 (488)
T 3dgz_A           85 AQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVD--EHTVRGVDKGGKATLLSAEHIVIATGGRPRYP  162 (488)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESS--SSEEEEECTTSCEEEEEEEEEEECCCEEECCC
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCceEEEECCEEEEcCCCCCCCC
Confidence             01234444444443           23345678999888877665  3455665543   3699999999999999999


Q ss_pred             C-CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhcc
Q 016820          178 Q-FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALT  252 (382)
Q Consensus       178 ~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~  252 (382)
                      + +||.+....    .+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+...++.    ......+.++
T Consensus       163 ~~i~G~~~~~~----~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~  236 (488)
T 3dgz_A          163 TQVKGALEYGI----TSDDIFWL--KESPGKTLVVGASYVALECAGFLTGIGLDTTVMMRSIPLRGFDQQMSSLVTEHME  236 (488)
T ss_dssp             SSCBTHHHHCB----CHHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcccccC----cHHHHHhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcCcccccCCHHHHHHHHHHHH
Confidence            8 999754211    11111222  33578999999999999999999999999999998764432    1222345677


Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---cccccc-CCCceeeCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLH-SDGYIITKPGT  328 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~-~~g~i~vd~~~  328 (382)
                      +.||++++++.+.++...+++.  ..+.+.+...++..++++|.|++++|++|++.++.   .++.++ ++|++.||+ +
T Consensus       237 ~~gv~~~~~~~v~~i~~~~~~~--~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~-~  313 (488)
T 3dgz_A          237 SHGTQFLKGCVPSHIKKLPTNQ--LQVTWEDHASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDA-Q  313 (488)
T ss_dssp             HTTCEEEETEEEEEEEECTTSC--EEEEEEETTTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCT-T
T ss_pred             HCCCEEEeCCEEEEEEEcCCCc--EEEEEEeCCCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECC-C
Confidence            8999999999999998855442  22445442224334689999999999999998742   577888 789999998 7


Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ++|+.|||||+|||+...+..++.|..||+.+|.+|..
T Consensus       314 ~~t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~g  351 (488)
T 3dgz_A          314 EATSVPHIYAIGDVAEGRPELTPTAIKAGKLLAQRLFG  351 (488)
T ss_dssp             SBCSSTTEEECGGGBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred             CccCCCCEEEeEEecCCCCcchhHHHHHHHHHHHHHcC
Confidence            88999999999999854567889999999999999873

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1e-35  Score=286.64  Aligned_cols=289  Identities=21%  Similarity=0.239  Sum_probs=213.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cCC--CCC---CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NFP--GFP---QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~~--~~~---~~~  117 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+    . ..||.+.......               .+.  +.+   ...
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~----~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   77 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEK----G-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTI   77 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEES----S-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEEC----C-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCcc
Confidence            47999999999999999999999999999995    3 4666553221100               000  110   011


Q ss_pred             ChHH-----------HHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCe--EEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          118 LGGD-----------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSK--SVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       118 ~~~~-----------~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~--~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      ....           +.+.+.+.+++.+++++.+++..++  .+.+.+.+.++  ++.||+||+|||++|..|+++|.+.
T Consensus        78 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id--~~~v~V~~~~G~~~i~~d~lViATGs~p~~~~~~g~~~  155 (455)
T 1ebd_A           78 DFAKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVD--ANTVRVVNGDSAQTYTFKNAIIATGSRPIELPNFKFSN  155 (455)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEE--TTEEEEEETTEEEEEECSEEEECCCEEECCBTTBCCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcc--CCeEEEEeCCCcEEEEeCEEEEecCCCCCCCCCCCccc
Confidence            2222           2333456667789999999766655  45677766544  6999999999999999888888653


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~  259 (382)
                      .    +.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||+++
T Consensus       156 ~----v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~  229 (455)
T 1ebd_A          156 R----ILDSTGALNL--GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAIIKKRLKKKGVEVV  229 (455)
T ss_dssp             S----EECHHHHHTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             e----EecHHHHhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            1    1111111112  23478999999999999999999999999999999887632     11223456777899999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      .++++.+++.++++   ..+.+..  .+++.++++|.+++++|++|++.++  + .++.++++|++.||+ +++|+.|+|
T Consensus       230 ~~~~v~~i~~~~~~---~~v~~~~--~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~t~~~~I  303 (455)
T 1ebd_A          230 TNALAKGAEEREDG---VTVTYEA--NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNI  303 (455)
T ss_dssp             ESEEEEEEEEETTE---EEEEEEE--TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCT-TCBCSSTTE
T ss_pred             eCCEEEEEEEeCCe---EEEEEEe--CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCC-CcccCCCCE
Confidence            99999999987653   1233332  2345789999999999999999873  3 467788889999999 688999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ||+|||++. ++.++.|..||+.+|.+|..
T Consensus       304 ya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  332 (455)
T 1ebd_A          304 FAIGDIVPG-PALAHKASYEGKVAAEAIAG  332 (455)
T ss_dssp             EECGGGSSS-CCCHHHHHHHHHHHHHHHTS
T ss_pred             EEEeccCCC-cccHHHHHHHHHHHHHHHcC
Confidence            999999974 57888999999999999974

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=100.00  E-value=3.6e-37  Score=298.67  Aligned_cols=295  Identities=16%  Similarity=0.140  Sum_probs=206.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH--HHc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS--LRF  133 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  133 (382)
                      ..+++|||||||+||+++|..|++.+++|+|||++..        ..+....+...  -..++..++...++...  .+.
T Consensus        40 ~~KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~--------~~~~PlL~~va--~G~l~~~~i~~p~~~~~~~~~~  109 (502)
T 4g6h_A           40 SDKPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY--------FLFTPLLPSAP--VGTVDEKSIIEPIVNFALKKKG  109 (502)
T ss_dssp             CSSCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE--------EECGGGGGGTT--TTSSCGGGGEEEHHHHHTTCSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC--------cccccchhHHh--hccccHHHhhhhHHHHHHhhcC
Confidence            3457899999999999999999999999999996311        00000000000  01122333333333333  345


Q ss_pred             CcEEEEeeEEEEEecCCcEEEEE-------------------CCeEEEcCEEEEccCCCCcCCCCCCCcc--ccCCCcce
Q 016820          134 GTQIFTETVSKVDFKSRPFKVFT-------------------DSKSVLADTVIVATGAVAKKLQFPGSDA--FWNRGISA  192 (382)
Q Consensus       134 gi~~~~~~v~~i~~~~~~~~v~~-------------------~~~~~~~d~lvlA~G~~~~~~~~~g~~~--~~~~~~~~  192 (382)
                      +++++.++|++||++++.+++..                   ++.++.||+||+|||+.|+.+++||.++  +..+++.+
T Consensus       110 ~v~~~~~~v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~~~~~ipG~~e~a~~l~t~~d  189 (502)
T 4g6h_A          110 NVTYYEAEATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEPNTFGIPGVTDYGHFLKEIPN  189 (502)
T ss_dssp             CEEEEEEEEEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEECCTTCTTHHHHCEECSSHHH
T ss_pred             CeEEEEEEEEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCcccccCCccCcccccCCCCCHHH
Confidence            79999999999999998887653                   3457999999999999999999999765  22233222


Q ss_pred             eeecc--------------CCC-CCCCCCcEEEEcCCchHHHHHHHHhhcC--------------CEEEEEEeCCCCcc-
Q 016820          193 CAVCD--------------GAA-PIFRDKPLAVIGGGDSAMEEANFLTKYG--------------SKVYIIHRRDSFRA-  242 (382)
Q Consensus       193 ~~~~~--------------~~~-~~~~~~~v~VvG~G~~a~e~a~~l~~~g--------------~~v~~~~~~~~~~~-  242 (382)
                      .....              ... ......+++|||+|++|+|+|..|.+++              .+|++++..+.+.. 
T Consensus       190 A~~ir~~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il~~  269 (502)
T 4g6h_A          190 SLEIRRTFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVLNM  269 (502)
T ss_dssp             HHHHHHHHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSSTT
T ss_pred             HHHHHHHHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccccC
Confidence            11100              000 0011247999999999999999887542              68999999987632 


Q ss_pred             ----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec-cCC--ceEEEecCeEEEeeCCCCChhhhc----
Q 016820          243 ----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL-VTG--QVSDLKVSGLFFAIGHEPATKFVD----  311 (382)
Q Consensus       243 ----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~-~~~--~~~~~~~D~vi~~~G~~p~~~~~~----  311 (382)
                          .....++.|++.||++++++++.+++++.       +.+... .++  .+.++++|.+|||+|.+|++....    
T Consensus       270 ~~~~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~-------~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~  342 (502)
T 4g6h_A          270 FEKKLSSYAQSHLENTSIKVHLRTAVAKVEEKQ-------LLAKTKHEDGKITEETIPYGTLIWATGNKARPVITDLFKK  342 (502)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEETTEEEEEECSSE-------EEEEEECTTSCEEEEEEECSEEEECCCEECCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcceeeecCceEEEEeCCc-------eEEEEEecCcccceeeeccCEEEEccCCcCCHHHHhHHHh
Confidence                12233567888999999999999998765       333321 112  235799999999999999853222    


Q ss_pred             ccccccCCCceeeCCCCCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHH
Q 016820          312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       312 ~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      .+...+.+|+|.||++++.+++|||||+|||+.. .++.+..|++||..+|+||.+.
T Consensus       343 ~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~a~~~~p~~a~~A~qqg~~~A~ni~~~  399 (502)
T 4g6h_A          343 IPEQNSSKRGLAVNDFLQVKGSNNIFAIGDNAFAGLPPTAQVAHQEAEYLAKNFDKM  399 (502)
T ss_dssp             SGGGTTCCSSEEBCTTSBBTTCSSEEECGGGEESSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccCCCceeECCccccCCCCCEEEEEcccCCCCCCchHHHHHHHHHHHHHHHHH
Confidence            3455678899999994444489999999999853 3788999999999999999763

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=100.00  E-value=3.3e-36  Score=290.67  Aligned_cols=291  Identities=23%  Similarity=0.231  Sum_probs=214.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cCCCCCCCCChHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NFPGFPQGILGGDL  122 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~~~~~~~~~~~~~  122 (382)
                      .+||+|||||++|+++|..|++.|++|+|||    +....||.|....+..               .++..+.......+
T Consensus         4 ~~DVvVIGgG~aGl~aA~~l~~~G~~V~liE----k~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~   79 (466)
T 3l8k_A            4 KYDVVVIGAGGAGYHGAFRLAKAKYNVLMAD----PKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTV   79 (466)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----TTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHhCCCeEEEEE----CCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHH
Confidence            5899999999999999999999999999999    4557888766432211               00111122333333


Q ss_pred             H------------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-CeE--EEcCEEEEccCCCCcCCCCCCCccccC
Q 016820          123 M------------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-SKS--VLADTVIVATGAVAKKLQFPGSDAFWN  187 (382)
Q Consensus       123 ~------------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~~~--~~~d~lvlA~G~~~~~~~~~g~~~~~~  187 (382)
                      .            ..+...+++.+++++.+++..++.  +.+.+.++ +..  +.||+||+|||++|+.|++||.+.++.
T Consensus        80 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~--~~~~V~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~t  157 (466)
T 3l8k_A           80 QDRKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDP--THVIVKTDEGKEIEAETRYMIIASGAETAKLRLPGVEYCLT  157 (466)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEET--TEEEEEETTSCEEEEEEEEEEECCCEEECCCCCTTGGGSBC
T ss_pred             HHHHHhheeccccchHHHHHHhCCCEEEEeEEEEecC--CeEEEEcCCCcEEEEecCEEEECCCCCccCCCCCCccceEe
Confidence            3            334444456799999888888874  45666654 345  899999999999999999999773211


Q ss_pred             CCcceee-eccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---hHHHHHHhccCCCcEEEcCce
Q 016820          188 RGISACA-VCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---SKIMQNRALTNPKIDVIWNSV  263 (382)
Q Consensus       188 ~~~~~~~-~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~~~~~~~~l~~~gv~~~~~~~  263 (382)
                        ..... +....  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..   ...+.+.+.+...|+++.+++
T Consensus       158 --~~~~~~~~~~l--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~d~~~~~~l~~~l~v~i~~~~~  233 (466)
T 3l8k_A          158 --SDDIFGYKTSF--RKLPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALITLEDQDIVNTLLSILKLNIKFNSP  233 (466)
T ss_dssp             --HHHHHSTTCSC--CSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCCHHHHHHHHHHHCCCEECSCC
T ss_pred             --HHHHHHHHHHH--hhCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCCCCCHHHHHHHHhcCEEEEEECCE
Confidence              11111 11122  33578999999999999999999999999999999887642   223322222222299999999


Q ss_pred             eEEEEecC-CceeeeeEEEEecc-CCceEEEecCeEEEeeCCCCChhh-h-cccccccCCCceeeCCCCCcCCCCceEEe
Q 016820          264 VLEAYGEG-DKKVLGGLKVKNLV-TGQVSDLKVSGLFFAIGHEPATKF-V-DGQLDLHSDGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       264 v~~i~~~~-~g~~~~~v~~~~~~-~~~~~~~~~D~vi~~~G~~p~~~~-~-~~~~~~~~~g~i~vd~~~~~t~~~~vya~  339 (382)
                      +.+++.++ ++     +.+.... +++..++++|.+++++|++|++.+ + ..++.++++| +.||+ +++|+.|||||+
T Consensus       234 v~~i~~~~~~~-----v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~-~~~t~~~~Iya~  306 (466)
T 3l8k_A          234 VTEVKKIKDDE-----YEVIYSTKDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDE-TMKTNIPNVFAT  306 (466)
T ss_dssp             EEEEEEEETTE-----EEEEECCTTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCT-TCBCSSTTEEEC
T ss_pred             EEEEEEcCCCc-----EEEEEEecCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECC-CccCCCCCEEEE
Confidence            99999866 43     3333311 244457999999999999999983 2 3578888899 99998 889999999999


Q ss_pred             cccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          340 GDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       340 GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||++. ++.+..|+.||+.+|.+|..
T Consensus       307 GD~~~~-~~~~~~A~~~g~~aa~~i~~  332 (466)
T 3l8k_A          307 GDANGL-APYYHAAVRMSIAAANNIMA  332 (466)
T ss_dssp             GGGTCS-CCSHHHHHHHHHHHHHHHHT
T ss_pred             EecCCC-CccHhHHHHHHHHHHHHHhC
Confidence            999975 68899999999999999974

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=100.00  E-value=6.6e-36  Score=289.94  Aligned_cols=297  Identities=19%  Similarity=0.163  Sum_probs=218.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc-----CCCCCCCcceecCCCcc------------------cC--C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM-----ANDIAPGGQLTTTSDVE------------------NF--P  111 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~-----~~~~~~gg~~~~~~~~~------------------~~--~  111 (382)
                      ..+||+|||||++|+++|..|+++|++|+|||+..     ......||.|....+.+                  .+  .
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~g~~   87 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAYGWN   87 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhcCcc
Confidence            46899999999999999999999999999999421     11224788775432111                  11  1


Q ss_pred             C-CCCCCChHHHHHHHHH-----------HHHHcCcEEEEeeEEEEEecCCcEEEEECCe--EEEcCEEEEccCCCCcCC
Q 016820          112 G-FPQGILGGDLMDRCRN-----------QSLRFGTQIFTETVSKVDFKSRPFKVFTDSK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       112 ~-~~~~~~~~~~~~~~~~-----------~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      . .+.......+.++..+           .+++.+++++.+.+..++  .+.+.+.++++  ++.||+||+|||++|+.|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~--~~~v~v~~~~g~~~~~~d~lviATGs~p~~p  165 (483)
T 3dgh_A           88 VDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVD--SHTLLAKLKSGERTITAQTFVIAVGGRPRYP  165 (483)
T ss_dssp             CCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEE--TTEEEEECTTCCEEEEEEEEEECCCEEECCC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEcc--CCEEEEEeCCCeEEEEcCEEEEeCCCCcCCC
Confidence            0 0113345555444333           345568999988877666  34566655433  599999999999999999


Q ss_pred             CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccC
Q 016820          178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTN  253 (382)
Q Consensus       178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~  253 (382)
                      ++||.+....    .+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+...++.    ......+.+++
T Consensus       166 ~i~G~~~~~~----~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~l~~~l~~  239 (483)
T 3dgh_A          166 DIPGAVEYGI----TSDDLFSL--DREPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRSIVLRGFDQQMAELVAASMEE  239 (483)
T ss_dssp             SSTTHHHHCB----CHHHHTTC--SSCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCSSTTSCHHHHHHHHHHHHH
T ss_pred             CCCCcccccC----cHHHHhhh--hhcCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCcccCHHHHHHHHHHHHh
Confidence            9999754211    11111122  33478999999999999999999999999999998644322    12223466778


Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCc
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTH  330 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~  330 (382)
                      .||++++++.+.+++.++++.  ..+.+.+...++..++++|.|++++|++|++.++.   .++.+++ |++.||+ .++
T Consensus       240 ~Gv~i~~~~~v~~i~~~~~~~--~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~-~~~  315 (483)
T 3dgh_A          240 RGIPFLRKTVPLSVEKQDDGK--LLVKYKNVETGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDS-QEA  315 (483)
T ss_dssp             TTCCEEETEEEEEEEECTTSC--EEEEEEETTTCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCT-TCB
T ss_pred             CCCEEEeCCEEEEEEEcCCCc--EEEEEecCCCCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECc-CCc
Confidence            999999999999999866542  23556553334456799999999999999998763   4678888 9999998 688


Q ss_pred             CCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       331 t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |+.|+|||+|||+...++.++.|..||+.+|.+|.
T Consensus       316 t~~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~  350 (483)
T 3dgh_A          316 TNVANIYAVGDIIYGKPELTPVAVLAGRLLARRLY  350 (483)
T ss_dssp             CSSTTEEECSTTBTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEcccCCCCccHHHHHHHHHHHHHHHc
Confidence            99999999999985457889999999999999986

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=100.00  E-value=8e-36  Score=288.33  Aligned_cols=293  Identities=22%  Similarity=0.258  Sum_probs=214.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc----------------C--CCCC----C
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN----------------F--PGFP----Q  115 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~----------------~--~~~~----~  115 (382)
                      ++||+|||||++|+++|..|++.|++|+|||    +...+||.|........                +  .+++    .
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie----~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~   77 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVE----KRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGV   77 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEE----SSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----CCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            4799999999999999999999999999999    44457776542211000                0  0000    0


Q ss_pred             CCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCC
Q 016820          116 GILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       116 ~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      ......+.           ..+...+++.+++++.+++..++  .+.+.+.+++   .++.||+||+|||++|..|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~~G~~~~~~~d~lviAtG~~p~~p~~~g  155 (468)
T 2qae_A           78 TMDSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFET--AHSIRVNGLDGKQEMLETKKTIIATGSEPTELPFLP  155 (468)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEE--TTEEEEEETTSCEEEEEEEEEEECCCEEECCBTTBC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEee--CCEEEEEecCCceEEEEcCEEEECCCCCcCCCCCCC
Confidence            11223322           22345566789999999876665  4566776543   46999999999999999888888


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhc-cCCC
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRAL-TNPK  255 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l-~~~g  255 (382)
                      .+.   ..+.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+ ++.|
T Consensus       156 ~~~---~~v~t~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~~g  230 (468)
T 2qae_A          156 FDE---KVVLSSTGALAL--PRVPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAPRCAPTLDEDVTNALVGALAKNEK  230 (468)
T ss_dssp             CCS---SSEECHHHHHTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             CCc---CceechHHHhhc--ccCCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCCcccccCCHHHHHHHHHHHhhcCC
Confidence            653   112222222222  23578999999999999999999999999999999887642     122234567 7889


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh--hc-ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF--VD-GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~--~~-~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |++++++++.+++.++++   ..+.+.. .+++..++++|.|++|+|++|++.+  ++ .++.++++|+|.||+ +++|+
T Consensus       231 v~i~~~~~v~~i~~~~~~---~~v~~~~-~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~t~  305 (468)
T 2qae_A          231 MKFMTSTKVVGGTNNGDS---VSLEVEG-KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGD-HFETS  305 (468)
T ss_dssp             CEEECSCEEEEEEECSSS---EEEEEEC-C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCT-TSBCS
T ss_pred             cEEEeCCEEEEEEEcCCe---EEEEEEc-CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECC-CcccC
Confidence            999999999999987653   1234431 1133367999999999999999987  33 467788889999998 68899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      .|+|||+|||++..++.++.|..||+.+|.+|..
T Consensus       306 ~~~IyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~  339 (468)
T 2qae_A          306 IPDVYAIGDVVDKGPMLAHKAEDEGVACAEILAG  339 (468)
T ss_dssp             STTEEECGGGBSSSCSCHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEeeccCCCCCccHhHHHHHHHHHHHHHcC
Confidence            9999999999972357889999999999999974

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.4e-36  Score=290.64  Aligned_cols=289  Identities=23%  Similarity=0.264  Sum_probs=216.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCc---------------ccCC--CCC---
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDV---------------ENFP--GFP---  114 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~~~~--~~~---  114 (382)
                      .+||+|||||++|+++|..|++.   |++|+|||+    .. .||.+......               ..+.  +++   
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~----~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~   76 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDC----DG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDF   76 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES----SC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC---
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeC----CC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCcccc
Confidence            47999999999999999999999   999999995    33 67765432110               0111  111   


Q ss_pred             --CCCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEec----CCcEEEEEC-Ce--EEEcCEEEEccCCCC
Q 016820          115 --QGILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFK----SRPFKVFTD-SK--SVLADTVIVATGAVA  174 (382)
Q Consensus       115 --~~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~----~~~~~v~~~-~~--~~~~d~lvlA~G~~~  174 (382)
                        .......+.           ..+.+.+++.+++++.+++..++.+    ++.+.+.++ +.  .+.||+||+|||++|
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p  156 (499)
T 1xdi_A           77 DDAKISLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP  156 (499)
T ss_dssp             ---CBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE
T ss_pred             CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC
Confidence              012333333           3345666788999999988777762    245666553 33  699999999999999


Q ss_pred             cCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHH
Q 016820          175 KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNR  249 (382)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~  249 (382)
                      ..|+++|.+..   .+.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..     ......+
T Consensus       157 ~~p~i~g~~~~---~v~~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~  231 (499)
T 1xdi_A          157 RILPSAQPDGE---RILTWRQLYDL--DALPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQDHVLPYEDADAALVLEE  231 (499)
T ss_dssp             CCCGGGCCCSS---SEEEGGGGGGC--SSCCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSSSSSCCSSHHHHHHHHH
T ss_pred             CCCCCCCCCcC---cEEehhHhhhh--hccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHH
Confidence            98888886542   11121111122  23468999999999999999999999999999999887632     1222345


Q ss_pred             hccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh--hc-ccccccCCCceeeCC
Q 016820          250 ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF--VD-GQLDLHSDGYIITKP  326 (382)
Q Consensus       250 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~--~~-~~~~~~~~g~i~vd~  326 (382)
                      .+++.||++++++++.+++.++++     +.+..   +++.++++|.|++++|.+|+..+  ++ .++.++++|+|.||+
T Consensus       232 ~l~~~GV~i~~~~~V~~i~~~~~~-----v~v~~---~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~  303 (499)
T 1xdi_A          232 SFAERGVRLFKNARAASVTRTGAG-----VLVTM---TDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDR  303 (499)
T ss_dssp             HHHHTTCEEETTCCEEEEEECSSS-----EEEEE---TTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCS
T ss_pred             HHHHCCCEEEeCCEEEEEEEeCCE-----EEEEE---CCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECC
Confidence            677889999999999999987653     44544   33457999999999999999987  43 477888889999998


Q ss_pred             CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          327 GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       327 ~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                       .++|+.|+|||+|||++. +..+..|+.||+.+|.+|..
T Consensus       304 -~~~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g  341 (499)
T 1xdi_A          304 -VSRTLATGIYAAGDCTGL-LPLASVAAMQGRIAMYHALG  341 (499)
T ss_dssp             -SSBCSSTTEEECSGGGTS-CSCHHHHHHHHHHHHHHHTT
T ss_pred             -CcccCCCCEEEEeccCCC-cccHHHHHHHHHHHHHHhcC
Confidence             688999999999999974 56788999999999999973

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=100.00  E-value=1.8e-35  Score=288.76  Aligned_cols=299  Identities=17%  Similarity=0.174  Sum_probs=214.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc----CCCCCCCcceecCCCcc------------------cC--C
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM----ANDIAPGGQLTTTSDVE------------------NF--P  111 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~----~~~~~~gg~~~~~~~~~------------------~~--~  111 (382)
                      +.++||+|||||++|+.+|..|+++|.+|+|||+..    ......||.|....+.+                  .+  .
T Consensus        30 ~~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~~  109 (519)
T 3qfa_A           30 SYDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGWK  109 (519)
T ss_dssp             SCSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTBC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCcc
Confidence            356899999999999999999999999999999632    11226788765332110                  01  0


Q ss_pred             C-CCCCCChHHHHHHHH-----------HHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC
Q 016820          112 G-FPQGILGGDLMDRCR-----------NQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       112 ~-~~~~~~~~~~~~~~~-----------~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~  176 (382)
                      . .+.......+.++.+           ..+++.+++++.+++..+++.  .+.+.+.+   .++.||+||+|||++|+.
T Consensus       110 ~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~--~v~v~~~~g~~~~i~~d~lViATGs~p~~  187 (519)
T 3qfa_A          110 VEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPH--RIKATNNKGKEKIYSAERFLIATGERPRY  187 (519)
T ss_dssp             CCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETT--EEEEECTTCCCCEEEEEEEEECCCEEECC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCC--EEEEEcCCCCEEEEECCEEEEECCCCcCC
Confidence            0 111334444444433           234567999999988887743  55665533   269999999999999999


Q ss_pred             CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhcc
Q 016820          177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALT  252 (382)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~  252 (382)
                      |++||.+.+...    .......  ...+++++|||+|.+|+|+|..|.++|.+|+++.+...++.    ......+.++
T Consensus       188 p~i~G~~~~~~t----~~~~~~l--~~~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~l~~~d~~~~~~~~~~l~  261 (519)
T 3qfa_A          188 LGIPGDKEYCIS----SDDLFSL--PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIGEHME  261 (519)
T ss_dssp             CCCTTHHHHCBC----HHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCccCceEc----HHHHhhh--hhcCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecccccccCCHHHHHHHHHHHH
Confidence            999996542111    1111112  33467899999999999999999999999999998643322    1222245677


Q ss_pred             CCCcEEEcCceeEEEEecCC---ceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-cccccc-CCCceeeC
Q 016820          253 NPKIDVIWNSVVLEAYGEGD---KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLH-SDGYIITK  325 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~---g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~-~~g~i~vd  325 (382)
                      +.||+++++..+.++....+   +.  ..+.+.....++..++++|.|++++|++|++..+  . .++.++ ++|++.||
T Consensus       262 ~~GV~v~~~~~v~~v~~~~~~~~~~--~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd  339 (519)
T 3qfa_A          262 EHGIKFIRQFVPIKVEQIEAGTPGR--LRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVT  339 (519)
T ss_dssp             HTTCEEEESEEEEEEEEEECCTTCE--EEEEEEESSSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCC
T ss_pred             HCCCEEEeCCeEEEEEEccCCCCce--EEEEEEECCCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeC
Confidence            89999999988888876432   21  1233333222222568999999999999999864  2 467787 58999999


Q ss_pred             CCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          326 PGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       326 ~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      + +++|+.|||||+|||+...++.+..|..||+.+|.+|.
T Consensus       340 ~-~~~Ts~~~IyA~GD~~~g~~~~~~~A~~~g~~aa~~i~  378 (519)
T 3qfa_A          340 D-EEQTNVPYIYAIGDILEDKVELTPVAIQAGRLLAQRLY  378 (519)
T ss_dssp             T-TSBCSSTTEEECGGGBSSSCCCHHHHHHHHHHHHHHHH
T ss_pred             C-CCccCCCCEEEEEeccCCCCccHHHHHHHHHHHHHHHc
Confidence            8 78899999999999984457889999999999999987

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=100.00  E-value=4.3e-35  Score=274.69  Aligned_cols=291  Identities=19%  Similarity=0.193  Sum_probs=211.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcc---------cCCCC--------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVE---------NFPGF--------------  113 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~---------~~~~~--------------  113 (382)
                      .+||+|||||++|+++|..|++.|+ +|+|||+.    . +|+.|.......         ...++              
T Consensus         4 ~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~----~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   78 (369)
T 3d1c_A            4 HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKG----T-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAF   78 (369)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSS----S-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHH
T ss_pred             cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecC----C-CCCccccCcccccccCcchhcccCCchhhhhccccccccc
Confidence            5799999999999999999999999 99999953    2 555443211000         00000              


Q ss_pred             ---CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCC
Q 016820          114 ---PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRG  189 (382)
Q Consensus       114 ---~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~  189 (382)
                         ...+...++.+++.+.++++|++++.+ +|.+++.+++.+.+.++++++.||+||+|+|..+. |.+|+ .    ..
T Consensus        79 ~~~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~-p~ip~-~----~~  152 (369)
T 3d1c_A           79 TFNEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF-PKKPF-K----YG  152 (369)
T ss_dssp             HHCCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS-BCCCS-S----SC
T ss_pred             cccccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc-cCCCC-C----ce
Confidence               112345778889999999999999888 69999988778888877778999999999999865 55665 1    22


Q ss_pred             cceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---------h---HHHHHHhccCCC-c
Q 016820          190 ISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---------S---KIMQNRALTNPK-I  256 (382)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---------~---~~~~~~~l~~~g-v  256 (382)
                      .+...+....  ...+++|+|||+|.+|+|+|..|.+.+.+|+++++.+.+..         .   ....++.+++.| |
T Consensus       153 ~~~~~~~~~~--~~~~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~~~~~~~~~d~~~~~~~~~~~~l~~~l~~~g~v  230 (369)
T 3d1c_A          153 IHYSEIEDFD--NFNKGQYVVIGGNESGFDAAYQLAKNGSDIALYTSTTGLNDPDADPSVRLSPYTRQRLGNVIKQGARI  230 (369)
T ss_dssp             EEGGGCSCGG--GSCSSEEEEECCSHHHHHHHHHHHHTTCEEEEECC----------CTTSCCHHHHHHHHHHHHTTCCE
T ss_pred             echhhcCChh--hcCCCEEEEECCCcCHHHHHHHHHhcCCeEEEEecCCCCCCCCCCCCccCCHHHHHHHHHHHhhCCcE
Confidence            2222222221  33568999999999999999999999999999999876541         1   123345677786 9


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCc
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      +++.+..+.+++.++++   ..+.+.+   ++ ....+|.+++++|++|+..++. ..+. +++|++.||+.+++|++|+
T Consensus       231 ~~~~~~~v~~i~~~~~~---~~v~~~~---g~-~~~~~d~vi~a~G~~~~~~~~~~~~~~-~~~g~i~v~~~~~~t~~~~  302 (369)
T 3d1c_A          231 EMNVHYTVKDIDFNNGQ---YHISFDS---GQ-SVHTPHEPILATGFDATKNPIVQQLFV-TTNQDIKLTTHDESTRYPN  302 (369)
T ss_dssp             EEECSCCEEEEEEETTE---EEEEESS---SC-CEEESSCCEECCCBCGGGSHHHHHHSC-CTTSCCCBCTTSBBSSSTT
T ss_pred             EEecCcEEEEEEecCCc---eEEEecC---Ce-EeccCCceEEeeccCCccchhhhhhcc-CCCCCEEechhhcccCCCC
Confidence            99999999999865542   1233332   32 2235699999999999996554 3455 7789999999778999999


Q ss_pred             eEEecccCCch---hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          336 VFAAGDVQDKK---YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       336 vya~GD~~~~~---~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ||++|||+...   ...+..+.+||+.+|.+|...+.
T Consensus       303 v~a~GD~~~~~~~~~~~~~~~~~~a~~~a~~l~~~~~  339 (369)
T 3d1c_A          303 IFMIGATVENDNAKLCYIYKFRARFAVLAHLLTQREG  339 (369)
T ss_dssp             EEECSTTCCCSSCCCCSHHHHGGGHHHHHHHHHHHTT
T ss_pred             eEEeccccccCCeeEEEEehhhHHHHHHHHHHhcccC
Confidence            99999998632   22345678899999999987664

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=100.00  E-value=1.3e-35  Score=286.16  Aligned_cols=285  Identities=20%  Similarity=0.246  Sum_probs=209.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc------------------c--cCCCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV------------------E--NFPGFPQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~------------------~--~~~~~~~~  116 (382)
                      .++||+|||||++|+++|..|++.|++|+|||+    . ..||.|....+.                  .  .+......
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~----~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~   77 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAAFGKRVALIES----K-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGT   77 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEES----S-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCcEEEEcC----C-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCC
Confidence            358999999999999999999999999999995    3 467765422100                  0  01100012


Q ss_pred             CChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc
Q 016820          117 ILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF  185 (382)
Q Consensus       117 ~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~  185 (382)
                      .....+.++           +...+.+.+++++.+++..++.  +.+.+  ++.++.||+||+|||++|..|++||.+..
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~--~g~~~~~d~lviAtGs~p~~p~i~G~~~~  153 (463)
T 2r9z_A           78 LDWPRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDA--HTIEV--EGQRLSADHIVIATGGRPIVPRLPGAELG  153 (463)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEE--TTEEEEEEEEEECCCEEECCCSCTTGGGS
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccC--CEEEE--CCEEEEcCEEEECCCCCCCCCCCCCccce
Confidence            333433333           3334466799999998777763  33443  66779999999999999999999987421


Q ss_pred             cCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEc
Q 016820          186 WNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIW  260 (382)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~  260 (382)
                      .     .+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||+++.
T Consensus       154 ~-----~~~~~~~~--~~~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i~~  226 (463)
T 2r9z_A          154 I-----TSDGFFAL--QQQPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRLLFQFDPLLSATLAENMHAQGIETHL  226 (463)
T ss_dssp             B-----CHHHHHHC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEES
T ss_pred             e-----cHHHHhhh--hccCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEEe
Confidence            1     11111111  22468999999999999999999999999999999876531     112234567788999999


Q ss_pred             CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceE
Q 016820          261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVF  337 (382)
Q Consensus       261 ~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vy  337 (382)
                      ++++.+++.++++     +.+.. .+++. ++++|.|++|+|++|+...+  . .++.++++|++.||+ +++|+.||||
T Consensus       227 ~~~v~~i~~~~~~-----~~v~~-~~G~~-~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~t~~~~Iy  298 (463)
T 2r9z_A          227 EFAVAALERDAQG-----TTLVA-QDGTR-LEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDA-YQNTNVPGVY  298 (463)
T ss_dssp             SCCEEEEEEETTE-----EEEEE-TTCCE-EEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCT-TSBCSSTTEE
T ss_pred             CCEEEEEEEeCCe-----EEEEE-eCCcE-EEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECC-CCccCCCCEE
Confidence            9999999987653     33333 12321 79999999999999999743  2 478888899999998 6789999999


Q ss_pred             EecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          338 AAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+|||++. +..+..|..||+.+|.+|..
T Consensus       299 a~GD~~~~-~~~~~~A~~~g~~aa~~i~g  326 (463)
T 2r9z_A          299 ALGDITGR-DQLTPVAIAAGRRLAERLFD  326 (463)
T ss_dssp             ECGGGGTS-CCCHHHHHHHHHHHHHHHHS
T ss_pred             EEeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence            99999864 56888999999999999863

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=100.00  E-value=2.2e-35  Score=286.09  Aligned_cols=294  Identities=21%  Similarity=0.227  Sum_probs=211.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc----------------cCC--CCC----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE----------------NFP--GFP----  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~----------------~~~--~~~----  114 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+    ....||.+.......                .+.  +++    
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~----~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~   79 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEK----RGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGD   79 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES----SSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCeEEEEec----CCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            358999999999999999999999999999994    345666543211000                000  110    


Q ss_pred             CCCChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eE------EEcCEEEEccCCCC
Q 016820          115 QGILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KS------VLADTVIVATGAVA  174 (382)
Q Consensus       115 ~~~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~------~~~d~lvlA~G~~~  174 (382)
                      ......++..           .+.+.+++.+++++.++...+  +.+.+.+.+.+   .+      +.||+||+|||++|
T Consensus        80 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~--~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p  157 (478)
T 1v59_A           80 IKINVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFE--DETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEV  157 (478)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEES--SSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEE
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEc--cCCeEEEEecCCCcccccccceEEeCEEEECcCCCC
Confidence            0122333322           244556678999999865443  45567776533   35      99999999999988


Q ss_pred             cCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHH
Q 016820          175 KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNR  249 (382)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~  249 (382)
                      .  .+||.+. ....+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+
T Consensus       158 ~--~~~g~~~-~~~~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~  232 (478)
T 1v59_A          158 T--PFPGIEI-DEEKIVSSTGALSL--KEIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQK  232 (478)
T ss_dssp             C--CCTTCCC-CSSSEECHHHHTTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHH
T ss_pred             C--CCCCCCC-CCceEEcHHHHHhh--hccCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCccccccCHHHHHHHHH
Confidence            4  3555432 11122222222222  22479999999999999999999999999999999887632     1222345


Q ss_pred             hccCCCcEEEcCceeEEEEe--cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh--hhc-ccccccCCCceee
Q 016820          250 ALTNPKIDVIWNSVVLEAYG--EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK--FVD-GQLDLHSDGYIIT  324 (382)
Q Consensus       250 ~l~~~gv~~~~~~~v~~i~~--~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~--~~~-~~~~~~~~g~i~v  324 (382)
                      .+++.||++++++++.++..  +++   ...+.+.+..++++..+++|.|++++|.+|++.  ++. .++.++++|+|.|
T Consensus       233 ~l~~~gv~i~~~~~v~~i~~~~~~~---~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~v  309 (478)
T 1v59_A          233 FLKKQGLDFKLSTKVISAKRNDDKN---VVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVI  309 (478)
T ss_dssp             HHHHTTCEEECSEEEEEEEEETTTT---EEEEEEEETTTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCC
T ss_pred             HHHHCCCEEEeCCEEEEEEEecCCC---eEEEEEEEcCCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeE
Confidence            67788999999999999987  443   223555432234557899999999999999997  444 5778888999999


Q ss_pred             CCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          325 KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       325 d~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+ .++|+.|+|||+|||+.. ++.++.|..||+.+|.+|..
T Consensus       310 d~-~~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~  349 (478)
T 1v59_A          310 DD-QFNSKFPHIKVVGDVTFG-PMLAHKAEEEGIAAVEMLKT  349 (478)
T ss_dssp             CT-TSBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHHH
T ss_pred             Cc-CCccCCCCEEEeeccCCC-cccHHHHHHHHHHHHHHHcC
Confidence            98 688999999999999974 57888999999999999975

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=100.00  E-value=1.5e-35  Score=287.72  Aligned_cols=290  Identities=20%  Similarity=0.205  Sum_probs=212.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHH-cCCCeEEEec----ccCCCCCCCcceecCCCcc---------------cCC--CCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR-AELKPILFEG----WMANDIAPGGQLTTTSDVE---------------NFP--GFPQ  115 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~----~~~~~~~~gg~~~~~~~~~---------------~~~--~~~~  115 (382)
                      .+||+|||||++|+++|..|++ .|++|+|||+    ...+....||.|....+.+               ..+  ++..
T Consensus         7 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~   86 (495)
T 2wpf_A            7 AFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWEF   86 (495)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEEC
T ss_pred             ccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCccc
Confidence            5899999999999999999999 9999999992    1111235788765322110               000  1110


Q ss_pred             -----CCChHHHHHHH-----------HHHHHHc-CcEEEEeeEEEEEecCCcEEEEE--C-----CeEEEcCEEEEccC
Q 016820          116 -----GILGGDLMDRC-----------RNQSLRF-GTQIFTETVSKVDFKSRPFKVFT--D-----SKSVLADTVIVATG  171 (382)
Q Consensus       116 -----~~~~~~~~~~~-----------~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~--~-----~~~~~~d~lvlA~G  171 (382)
                           .....++.++.           ...+++. +++++.+++..++  .+.+.+..  +     +..+.||+||+|||
T Consensus        87 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~--~~~v~v~~~~~~~~~~~~~~~~d~lViATG  164 (495)
T 2wpf_A           87 DGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLES--KNVVVVRETADPKSAVKERLQADHILLATG  164 (495)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEE--TTEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEee--CCEEEEeecCCccCCCCeEEEcCEEEEeCC
Confidence                 22344444433           3334567 9999999887776  34455541  2     45699999999999


Q ss_pred             CCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeCCCCcc-----h
Q 016820          172 AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRRDSFRA-----S  243 (382)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~~~~~~-----~  243 (382)
                      ++|+.|++||.+..     ..+......  ...+++++|||+|.+|+|+|..|.++   |.+|+++++.+.+..     .
T Consensus       165 s~p~~p~i~G~~~~-----~~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~  237 (495)
T 2wpf_A          165 SWPQMPAIPGIEHC-----ISSNEAFYL--PEPPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLILRGFDETI  237 (495)
T ss_dssp             EEECCCCCTTGGGC-----EEHHHHTTC--SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSCTTSCHHH
T ss_pred             CCcCCCCCCCcccc-----ccHHHHHhh--hhcCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccccccCHHH
Confidence            99999999987431     111111122  23478999999999999999999999   999999999887532     1


Q ss_pred             HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCC
Q 016820          244 KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDG  320 (382)
Q Consensus       244 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g  320 (382)
                      .....+.+++.||++++++++.+++.++++.  ..+.+.+   +  .++++|.|++++|++|++..+  + .++.++++|
T Consensus       238 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~--~~v~~~~---G--~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G  310 (495)
T 2wpf_A          238 REEVTKQLTANGIEIMTNENPAKVSLNTDGS--KHVTFES---G--KTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKG  310 (495)
T ss_dssp             HHHHHHHHHHTTCEEEESCCEEEEEECTTSC--EEEEETT---S--CEEEESEEEECSCEEECCGGGTGGGTTCCBCTTS
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCce--EEEEECC---C--cEEEcCEEEECCCCcccccccchhhcCccCCCCC
Confidence            2223456778899999999999999875431  1233322   3  479999999999999999743  3 577888899


Q ss_pred             ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       321 ~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      +|.||+ +++|+.|+|||+|||++. ++.+..|+.||+.+|.+|.
T Consensus       311 ~i~Vd~-~~~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~  353 (495)
T 2wpf_A          311 GVQVDE-FSRTNVPNIYAIGDITDR-LMLTPVAINEGAALVDTVF  353 (495)
T ss_dssp             SBCCCT-TCBCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHH
T ss_pred             CEEECC-CCccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhc
Confidence            999998 788999999999999973 5788999999999999986

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=100.00  E-value=1.7e-35  Score=287.10  Aligned_cols=291  Identities=18%  Similarity=0.181  Sum_probs=213.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHH-cCCCeEEEecc----cCCCCCCCcceecCCCcc---------------cCC--CCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGW----MANDIAPGGQLTTTSDVE---------------NFP--GFPQ  115 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~----~~~~~~~gg~~~~~~~~~---------------~~~--~~~~  115 (382)
                      ++||+|||||++|+++|+.|++ .|++|+|||+.    ..+....||.|....+.+               ...  ++..
T Consensus         3 ~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~   82 (490)
T 1fec_A            3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWEL   82 (490)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEC
T ss_pred             cccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCccc
Confidence            5899999999999999999999 99999999920    011235677764322110               000  1100


Q ss_pred             -----CCChHHHHH-----------HHHHHHHHc-CcEEEEeeEEEEEecCCcEEEEE----CC---eEEEcCEEEEccC
Q 016820          116 -----GILGGDLMD-----------RCRNQSLRF-GTQIFTETVSKVDFKSRPFKVFT----DS---KSVLADTVIVATG  171 (382)
Q Consensus       116 -----~~~~~~~~~-----------~~~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~----~~---~~~~~d~lvlA~G  171 (382)
                           .....++.+           .+.+.+++. +++++.+++..++.  +.+.+..    ++   ..+.||+||+|||
T Consensus        83 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~--~~v~v~~~~~~~g~~~~~~~~d~lviAtG  160 (490)
T 1fec_A           83 DRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDN--HTVLVRESADPNSAVLETLDTEYILLATG  160 (490)
T ss_dssp             CGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEET--TEEEEESSSSTTSCEEEEEEEEEEEECCC
T ss_pred             CCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeC--CEEEEEeeccCCCCceEEEEcCEEEEeCC
Confidence                 123333333           333445667 99999998888763  4566653    44   5699999999999


Q ss_pred             CCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeCCCCcc-----h
Q 016820          172 AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRRDSFRA-----S  243 (382)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~~~~~~-----~  243 (382)
                      ++|..|++||.+...     .+......  ...+++++|||+|.+|+|+|..|.++   |.+|+++++.+.+..     .
T Consensus       161 s~p~~p~i~g~~~~~-----~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l~~~d~~~  233 (490)
T 1fec_A          161 SWPQHLGIEGDDLCI-----TSNEAFYL--DEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSEL  233 (490)
T ss_dssp             EEECCCCSBTGGGCB-----CHHHHTTC--SSCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHH
T ss_pred             CCCCCCCCCCcccee-----cHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcccccCHHH
Confidence            999999998874321     11111112  23478999999999999999999999   999999999987532     1


Q ss_pred             HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCC
Q 016820          244 KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDG  320 (382)
Q Consensus       244 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g  320 (382)
                      .....+.+++.||++++++++.+++.++++.    +.+..   .++.++++|.|++++|++|++..+  . .++.++++|
T Consensus       234 ~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~----~~v~~---~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G  306 (490)
T 1fec_A          234 RKQLTEQLRANGINVRTHENPAKVTKNADGT----RHVVF---ESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNG  306 (490)
T ss_dssp             HHHHHHHHHHTTEEEEETCCEEEEEECTTSC----EEEEE---TTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTS
T ss_pred             HHHHHHHHHhCCCEEEeCCEEEEEEEcCCCE----EEEEE---CCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCC
Confidence            2223456778899999999999999875432    33332   122479999999999999999743  3 578888899


Q ss_pred             ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          321 YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       321 ~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +|.||+ +++|+.|+|||+|||++. ++.+..|+.||+.+|.+|..
T Consensus       307 ~I~Vd~-~~~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g  350 (490)
T 1fec_A          307 AIKVDA-YSKTNVDNIYAIGDVTDR-VMLTPVAINEGAAFVDTVFA  350 (490)
T ss_dssp             CBCCCT-TCBCSSTTEEECGGGGCS-CCCHHHHHHHHHHHHHHHHS
T ss_pred             CEEECC-CCccCCCCEEEEeccCCC-ccCHHHHHHHHHHHHHHhcC
Confidence            999998 688999999999999973 57899999999999999863

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=100.00  E-value=2.5e-35  Score=288.20  Aligned_cols=292  Identities=20%  Similarity=0.296  Sum_probs=216.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc------------------c---CCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE------------------N---FPGFPQ  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~---~~~~~~  115 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+    ....||.+.......                  .   ++....
T Consensus        42 ~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~----~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~  117 (523)
T 1mo9_A           42 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDR----WPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTE  117 (523)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEES----SSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeC----CCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHh
Confidence            458999999999999999999999999999994    444677654321110                  0   111111


Q ss_pred             -CCChHHHHHHHH-------HHH-----HHcCcEEE-EeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCC
Q 016820          116 -GILGGDLMDRCR-------NQS-----LRFGTQIF-TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       116 -~~~~~~~~~~~~-------~~~-----~~~gi~~~-~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                       .+...++.+++.       ..+     ++.+++++ .+++..++.  +.  +..++..+.||+||+|||++|..|+++|
T Consensus       118 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~~--v~~~g~~~~~d~lViATGs~p~~p~i~G  193 (523)
T 1mo9_A          118 KVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDN--HT--VEAAGKVFKAKNLILAVGAGPGTLDVPG  193 (523)
T ss_dssp             CCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEET--TE--EEETTEEEEBSCEEECCCEECCCCCSTT
T ss_pred             hhhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeC--CE--EEECCEEEEeCEEEECCCCCCCCCCCCC
Confidence             122556666554       344     67799998 668888874  33  4345667999999999999999999998


Q ss_pred             CccccCCCcceeeecc-CCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCC
Q 016820          182 SDAFWNRGISACAVCD-GAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPK  255 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~-~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~g  255 (382)
                      .+.   ..+....... ... ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..  .   ...+.+.+++.|
T Consensus       194 ~~~---~~v~~~~~~~~~l~-~~~g~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~G  269 (523)
T 1mo9_A          194 VNA---KGVFDHATLVEELD-YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQG  269 (523)
T ss_dssp             TTS---BTEEEHHHHHHHCC-SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTT
T ss_pred             ccc---CcEeeHHHHHHHHH-hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEecCcccccccHHHHHHHHHHHHhCC
Confidence            764   1122221111 110 12238999999999999999999999999999999887632  1   122345677889


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceE-EEecCeEEEeeCCCCChh-hhc-ccccccCCCceeeCCCCCcCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVS-DLKVSGLFFAIGHEPATK-FVD-GQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~-~~~~D~vi~~~G~~p~~~-~~~-~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      |+++.++++.++..+++++ ++.+.+..   .++. ++++|.|++|+|.+|++. ++. .++.++++|++.||+ +++|+
T Consensus       270 V~i~~~~~V~~i~~~~~~~-v~~~~v~~---~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~-~~~t~  344 (523)
T 1mo9_A          270 MEIISGSNVTRIEEDANGR-VQAVVAMT---PNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNE-YLQTS  344 (523)
T ss_dssp             CEEESSCEEEEEEECTTSB-EEEEEEEE---TTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCT-TSBCS
T ss_pred             cEEEECCEEEEEEEcCCCc-eEEEEEEE---CCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECC-CCccC
Confidence            9999999999999865542 32233443   2334 799999999999999998 565 578888899999998 78899


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      .|+|||+|||++. ++.++.|..||+.+|.+|..
T Consensus       345 ~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g  377 (523)
T 1mo9_A          345 VPNVYAVGDLIGG-PMEMFKARKSGCYAARNVMG  377 (523)
T ss_dssp             STTEEECGGGGCS-SCSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEeecCCC-cccHHHHHHHHHHHHHHHcC
Confidence            9999999999974 47888999999999999973

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=100.00  E-value=1.8e-35  Score=285.62  Aligned_cols=289  Identities=20%  Similarity=0.178  Sum_probs=211.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc----------------cCC--CCC--CCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE----------------NFP--GFP--QGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~----------------~~~--~~~--~~~  117 (382)
                      .+||+|||||++|+++|..|++.|++|+|||+.     ..||.+.......                .+.  +++  ...
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~~G~~V~liE~~-----~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~   77 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQLGLSTAIVEPK-----YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTF   77 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS-----CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCC-----CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            479999999999999999999999999999952     4565543211000                000  000  011


Q ss_pred             ChHH-----------HHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          118 LGGD-----------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       118 ~~~~-----------~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ....           +...+.+.+++.+++++.++...+  +.+.+.+.+.+   .++.||+||+|||++|+.|+++|.+
T Consensus        78 ~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~i--d~~~v~V~~~~G~~~~~~~d~lViAtG~~~~~~~~~g~~  155 (464)
T 2a8x_A           78 DYGIAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFA--DANTLLVDLNDGGTESVTFDNAIIATGSSTRLVPGTSLS  155 (464)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEES--SSSEEEEEETTSCCEEEEEEEEEECCCEEECCCTTCCCB
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEe--cCCeEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCCCC
Confidence            2222           223345566778999998875443  45567776643   4699999999999999988888865


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV  258 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~  258 (382)
                      ..    +.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||++
T Consensus       156 ~~----~~~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv~i  229 (464)
T 2a8x_A          156 AN----VVTYEEQILS--RELPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPRALPNEDADVSKEIEKQFKKLGVTI  229 (464)
T ss_dssp             TT----EECHHHHHTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEE
T ss_pred             ce----EEecHHHhhc--cccCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHcCCEE
Confidence            31    1111111122  22478999999999999999999999999999999887632     1122345677889999


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCc
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      ++++++.+++.++++   ..+.+.  .+++..++++|.+++++|++|++.++  + .++.++++|+|.||+ .++|+.|+
T Consensus       230 ~~~~~v~~i~~~~~~---~~v~~~--~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~t~~~~  303 (464)
T 2a8x_A          230 LTATKVESIADGGSQ---VTVTVT--KDGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDD-YMRTNVGH  303 (464)
T ss_dssp             ECSCEEEEEEECSSC---EEEEEE--SSSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCT-TSBCSSTT
T ss_pred             EeCcEEEEEEEcCCe---EEEEEE--cCCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECc-CCccCCCC
Confidence            999999999987643   123333  12444679999999999999999873  3 467788889999999 68899999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+|||++. ++.++.|..||+.+|.+|..
T Consensus       304 IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~g  333 (464)
T 2a8x_A          304 IYAIGDVNGL-LQLAHVAEAQGVVAAETIAG  333 (464)
T ss_dssp             EEECGGGGCS-SCSHHHHHHHHHHHHHHHHT
T ss_pred             EEEeECcCCC-ccCHHHHHHHHHHHHHHhcC
Confidence            9999999974 57888999999999999973

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=100.00  E-value=5.9e-36  Score=284.95  Aligned_cols=289  Identities=18%  Similarity=0.169  Sum_probs=211.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC--eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK--PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~--v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ..+||||||||++|+++|..|++.|++  |+|||+..    ..+....  .....+  +.......++..+..+.+.+.+
T Consensus         8 ~~~~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~----~~~y~~~--~l~~~~--~~~~~~~~~~~~~~~~~~~~~~   79 (415)
T 3lxd_A            8 ERADVVIVGAGHGGAQAAIALRQNGFEGRVLVIGREP----EIPYERP--PLSKEY--LAREKTFERICIRPAQFWEDKA   79 (415)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCSCEEEEESSS----SCCBCSG--GGGTTT--TTTSSCSGGGBSSCHHHHHHTT
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCcCCCEEEEecCC----CCCcCcc--cCCHHH--HcCCCCHHHhccCCHHHHHHCC
Confidence            458999999999999999999999987  99999532    1111110  000001  1111122333334455667789


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCC-CCcEE
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFR-DKPLA  209 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~-~~~v~  209 (382)
                      ++++.+ +|..++.+.+.+.+. ++..+.||+||+|||++|+.|++||.+.   +..+....+......  ... +++++
T Consensus        80 i~~~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~~~~~~i~g~~~~~v~~~~~~~d~~~l~~~--~~~~~~~vv  156 (415)
T 3lxd_A           80 VEMKLGAEVVSLDPAAHTVKLG-DGSAIEYGKLIWATGGDPRRLSCVGADLAGVHAVRTKEDADRLMAE--LDAGAKNAV  156 (415)
T ss_dssp             EEEEETCCEEEEETTTTEEEET-TSCEEEEEEEEECCCEECCCCBTTSSCCBTEECCCSHHHHHHHHHH--HHTTCCEEE
T ss_pred             cEEEeCCEEEEEECCCCEEEEC-CCCEEEeeEEEEccCCccCCCCCCCccccCEEEEcCHHHHHHHHHH--hhhcCCeEE
Confidence            999999 899999887654442 4567999999999999999999998763   222222222222221  223 78999


Q ss_pred             EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      |||+|.+|+|+|..+.+.|.+|+++++.+.+..      ......+.+++.||++++++.+.+++.++++  +..+++.+
T Consensus       157 ViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~v~l~d  234 (415)
T 3lxd_A          157 VIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLARVAGEALSEFYQAEHRAHGVDLRTGAAMDCIEGDGTK--VTGVRMQD  234 (415)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEESSSB--EEEEEESS
T ss_pred             EECCCHHHHHHHHHHHhcCCeEEEEecCCchhhhhcCHHHHHHHHHHHHhCCCEEEECCEEEEEEecCCc--EEEEEeCC
Confidence            999999999999999999999999999887632      1222346677899999999999999986542  44455543


Q ss_pred             ccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhh----------HHHH
Q 016820          284 LVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYR----------QAVT  352 (382)
Q Consensus       284 ~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~----------~~~~  352 (382)
                         +  ..+++|.|++++|.+|++.++. .++..+ + .+.||+ +++|++|+|||+|||+..+..          .+..
T Consensus       235 ---G--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~-gi~vd~-~~~t~~~~iyA~GD~a~~~~~~~~g~~~~~~~~~~  306 (415)
T 3lxd_A          235 ---G--SVIPADIVIVGIGIVPCVGALISAGASGG-N-GVDVDE-FCRTSLTDVYAIGDCAAHANDFADGAVIRLESVQN  306 (415)
T ss_dssp             ---S--CEEECSEEEECSCCEESCHHHHHTTCCCS-S-SEECCT-TCBCSSTTEEECGGGEEEECGGGTTCEECCCSHHH
T ss_pred             ---C--CEEEcCEEEECCCCccChHHHHhCCCCcC-C-CEEECC-CCCcCCCCEEEEEeeeeecCcccCCcceeechHHH
Confidence               3  5799999999999999998876 456555 3 499998 788999999999999865421          3689


Q ss_pred             HHhhHHHHHHHHHH
Q 016820          353 AAGTGCMAALEAEH  366 (382)
Q Consensus       353 a~~~g~~aa~~i~~  366 (382)
                      |..||+.+|.+|..
T Consensus       307 A~~qg~~aa~~i~g  320 (415)
T 3lxd_A          307 ANDMATAAAKDICG  320 (415)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999973

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=100.00  E-value=1.3e-36  Score=291.25  Aligned_cols=291  Identities=24%  Similarity=0.278  Sum_probs=215.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    .....||.+.+        ++|......++.++..+.++++|++
T Consensus       121 ~~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e----~~~~~GG~l~~--------gip~~~~~~~~~~~~~~~l~~~gv~  188 (456)
T 2vdc_G          121 LGLSVGVIGAGPAGLAAAEELRAKGYEVHVYD----RYDRMGGLLVY--------GIPGFKLEKSVVERRVKLLADAGVI  188 (456)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEC----SSSSCSTHHHH--------TSCTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEe----ccCCCCCeeee--------cCCCccCCHHHHHHHHHHHHHCCcE
Confidence            45799999999999999999999999999999    45567777653        2222333467788888888999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCccee-ee--------ccCC-------
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISAC-AV--------CDGA-------  199 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~-~~--------~~~~-------  199 (382)
                      ++.++...     ..+  ..++..+.||+||+|||+. |+.+++||.+.   ..++.. .+        ....       
T Consensus       189 ~~~~~~v~-----~~v--~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~---~gv~~a~~~l~~~~~~~~~~~~~~~~~g  258 (456)
T 2vdc_G          189 YHPNFEVG-----RDA--SLPELRRKHVAVLVATGVYKARDIKAPGSGL---GNIVAALDYLTTSNKVSLGDTVEAYENG  258 (456)
T ss_dssp             EETTCCBT-----TTB--CHHHHHSSCSEEEECCCCCEECCTTCSCCTT---TTEEEHHHHHHHHHHHHCTTTCSSCCTT
T ss_pred             EEeCCEec-----cEE--EhhHhHhhCCEEEEecCCCCCCCCCCCCCcC---CCcEEHHHHHHHhhhhhccccccccccc
Confidence            98875321     111  1122336799999999996 77788888653   111110 00        0000       


Q ss_pred             CCCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCC--cchHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          200 APIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSF--RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       200 ~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~--~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      .....+++|+|||+|.+|+|+|..+.+.|. +|++++|++..  +...... +.++++||+++++..+.++..+  |+ +
T Consensus       259 ~~~~~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~~~p~~~~e~-~~~~~~Gv~~~~~~~~~~i~~~--g~-v  334 (456)
T 2vdc_G          259 SLNAAGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRKNMPGSQREV-AHAEEEGVEFIWQAAPEGFTGD--TV-V  334 (456)
T ss_dssp             CSCCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCSTTCSSCHHHH-HHHHHTTCEEECCSSSCCEEEE--EE-E
T ss_pred             ccccCCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCccCCCCCHHHH-HHHHHCCCEEEeCCCceEEeCC--Cc-E
Confidence            012468999999999999999999999987 59999998864  3223222 3466689999999999998763  21 3


Q ss_pred             eeEEEEecc---------------CCceEEEecCeEEEeeCCCCChh--hhc-ccccccCCCceeeCCCCCcCCCCceEE
Q 016820          277 GGLKVKNLV---------------TGQVSDLKVSGLFFAIGHEPATK--FVD-GQLDLHSDGYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       277 ~~v~~~~~~---------------~~~~~~~~~D~vi~~~G~~p~~~--~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya  338 (382)
                      .++++....               ++++.++++|.||+++|++|+..  ++. .++.++++|++.||+.+++|+.|+|||
T Consensus       335 ~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA  414 (456)
T 2vdc_G          335 TGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFA  414 (456)
T ss_dssp             ETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEE
T ss_pred             EEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEE
Confidence            334443110               23446799999999999999875  444 577888999999999658899999999


Q ss_pred             ecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          339 AGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      +|||+.. ++++..|+.+|+.||.+|..+|.++...
T Consensus       415 ~GD~~~g-~~~v~~A~~~G~~aA~~i~~~L~~~~~~  449 (456)
T 2vdc_G          415 AGDIVRG-ASLVVWAIRDGRDAAEGIHAYAKAKAEA  449 (456)
T ss_dssp             CGGGGSS-CCSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             eccccCC-chHHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999864 5789999999999999999999986644

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=100.00  E-value=7.5e-36  Score=286.84  Aligned_cols=284  Identities=20%  Similarity=0.243  Sum_probs=209.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------c-cCC--CCC---CC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------E-NFP--GFP---QG  116 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~-~~~--~~~---~~  116 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+    . ..||.|....+.               . ..+  +++   ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~----~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~   78 (450)
T 1ges_A            4 HYDYIAIGGGSGGIASINRAAMYGQKCALIEA----K-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINK   78 (450)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTTTCCEEEEES----S-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEE
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEcC----C-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCc
Confidence            58999999999999999999999999999995    3 467765421100               0 000  110   01


Q ss_pred             CChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc
Q 016820          117 ILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF  185 (382)
Q Consensus       117 ~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~  185 (382)
                      .....+.+           .+...+.+.+++++.+++..++.  +.+.+  ++.++.||+||+|||++|..|++||.+..
T Consensus        79 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~~--~g~~~~~d~lviAtGs~p~~p~i~g~~~~  154 (450)
T 1ges_A           79 FNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--KTLEV--NGETITADHILIATGGRPSHPDIPGVEYG  154 (450)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--TEEEE--TTEEEEEEEEEECCCEEECCCCSTTGGGS
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecC--CEEEE--CCEEEEeCEEEECCCCCCCCCCCCCccce
Confidence            22333332           23344466799999998777763  34444  66779999999999999999999987431


Q ss_pred             cCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEc
Q 016820          186 WNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIW  260 (382)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~  260 (382)
                      .  ...  .. ...  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||+++.
T Consensus       155 ~--~~~--~~-~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~  227 (450)
T 1ges_A          155 I--DSD--GF-FAL--PALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHT  227 (450)
T ss_dssp             B--CHH--HH-HHC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEEC
T ss_pred             e--cHH--Hh-hhh--hhcCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCchhhhhhHHHHHHHHHHHHHCCCEEEe
Confidence            1  111  11 111  22478999999999999999999999999999999876531     122234567778999999


Q ss_pred             CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceE
Q 016820          261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVF  337 (382)
Q Consensus       261 ~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vy  337 (382)
                      ++++.+++.++++.  ..+.+.+   +  ..+++|.|++|+|++|++..+  + .++.++++|++.||+ +++|+.|+||
T Consensus       228 ~~~v~~i~~~~~~~--~~v~~~~---g--~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~-~~~t~~~~Iy  299 (450)
T 1ges_A          228 NAIPKAVVKNTDGS--LTLELED---G--RSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDK-YQNTNIEGIY  299 (450)
T ss_dssp             SCCEEEEEECTTSC--EEEEETT---S--CEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCT-TSBCSSTTEE
T ss_pred             CCEEEEEEEeCCcE--EEEEECC---C--cEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECC-CCccCCCCEE
Confidence            99999999865431  1233322   3  479999999999999999743  3 478888899999999 6789999999


Q ss_pred             EecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          338 AAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       338 a~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+|||++. +..+..|..||+.+|.+|..
T Consensus       300 A~GD~~~~-~~~~~~A~~~g~~aa~~i~~  327 (450)
T 1ges_A          300 AVGDNTGA-VELTPVAVAAGRRLSERLFN  327 (450)
T ss_dssp             ECSGGGTS-CCCHHHHHHHHHHHHHHHHT
T ss_pred             EEeccCCC-CccHHHHHHHHHHHHHHHcC
Confidence            99999864 56888999999999999974

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=100.00  E-value=6e-35  Score=282.86  Aligned_cols=294  Identities=22%  Similarity=0.262  Sum_probs=213.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc--CCCCCCCcceecCCCc-------------------ccC--CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM--ANDIAPGGQLTTTSDV-------------------ENF--PGF  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~--~~~~~~gg~~~~~~~~-------------------~~~--~~~  113 (382)
                      .++||+|||||++|+++|..|++.|++|+|||+..  ......||.|....+.                   ..+  ...
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~   81 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGISTG   81 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEECS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcccC
Confidence            35899999999999999999999999999999632  1112356655332111                   000  000


Q ss_pred             CCCCChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCC
Q 016820          114 PQGILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       114 ~~~~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ........+..           .+....++.+++++.+++..++  .+.+.+..++   ..+.||+||+|||++|..|+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~--~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~~~~~  159 (476)
T 3lad_A           82 EVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLA--GKKVEVTAADGSSQVLDTENVILASGSKPVEIPP  159 (476)
T ss_dssp             CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECS--TTCEEEECTTSCEEEECCSCEEECCCEEECCCTT
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEcCCCceEEEEcCEEEEcCCCCCCCCCC
Confidence            11122333222           2334456679999999876654  4556676544   369999999999999887655


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNP  254 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~  254 (382)
                      ++.+.   ..+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.
T Consensus       160 ~~~~~---~~v~~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~  234 (476)
T 3lad_A          160 APVDQ---DVIVDSTGALDF--QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQ  234 (476)
T ss_dssp             SCCCS---SSEEEHHHHTSC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHT
T ss_pred             CCCCc---ccEEechhhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCcccCHHHHHHHHHHHHhC
Confidence            54322   222223222222  34578999999999999999999999999999999987642     122234567789


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCc-eEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCc
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTH  330 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~-~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~  330 (382)
                      ||++++++++.+++.++++   ..+.+.+   ++ ...+++|.|++++|++|++..+   ..++.++++|++.||+ .++
T Consensus       235 Gv~v~~~~~v~~i~~~~~~---~~v~~~~---~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~-~~~  307 (476)
T 3lad_A          235 GLKILLGARVTGTEVKNKQ---VTVKFVD---AEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDD-YCA  307 (476)
T ss_dssp             TEEEEETCEEEEEEECSSC---EEEEEES---SSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCT-TSB
T ss_pred             CCEEEECCEEEEEEEcCCE---EEEEEEe---CCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCC-Ccc
Confidence            9999999999999987653   1244443   22 3679999999999999999854   2578888899999998 688


Q ss_pred             CCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          331 TSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       331 t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |+.|||||+|||++. +..++.|+.||+.+|.+|.
T Consensus       308 t~~~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~  341 (476)
T 3lad_A          308 TSVPGVYAIGDVVRG-AMLAHKASEEGVVVAERIA  341 (476)
T ss_dssp             CSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCEEEEEccCCC-cccHHHHHHHHHHHHHHhc
Confidence            999999999999963 5789999999999999996

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=1.1e-35  Score=287.54  Aligned_cols=294  Identities=23%  Similarity=0.208  Sum_probs=214.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc----------------C--CCCC---C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN----------------F--PGFP---Q  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~----------------~--~~~~---~  115 (382)
                      .++||+|||||++|+++|..|++.|++|+|||    +...+||.+........                +  .+++   .
T Consensus         5 ~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE----~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~   80 (470)
T 1dxl_A            5 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE----KRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   80 (470)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEE----CSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----CCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCC
Confidence            35899999999999999999999999999999    44456766532211000                0  0000   0


Q ss_pred             CCChHH-----------HHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCC
Q 016820          116 GILGGD-----------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       116 ~~~~~~-----------~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      ......           +...+...+++.+++++.+++..++  .+.+.+.+++   .+++||+||+|||++|..|+++|
T Consensus        81 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~~~v~~~~G~~~~i~~d~lIiAtGs~p~~p~~~g  158 (470)
T 1dxl_A           81 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVS--PSEISVDTIEGENTVVKGKHIIIATGSDVKSLPGVT  158 (470)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEE--TTEEEECCSSSCCEEEECSEEEECCCEEECCBTTBC
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCEEEEEeCCCceEEEEcCEEEECCCCCCCCCCCCC
Confidence            112222           2223455666789999999765554  4566665433   46999999999999999988888


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCc
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKI  256 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv  256 (382)
                      .+.   ..+.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||
T Consensus       159 ~~~---~~v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~gv  233 (470)
T 1dxl_A          159 IDE---KKIVSSTGALAL--SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGM  233 (470)
T ss_dssp             CCS---SSEECHHHHTTC--SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred             CCc---ccEEeHHHhhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccccccHHHHHHHHHHHHHcCC
Confidence            653   111111111122  23478999999999999999999999999999999887632     12223456778899


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSV  333 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~  333 (382)
                      +++.++++.+++.++++   ..+.+.+..++++.++++|.|++++|++|++.++  + .++.++++|++.||+ +++|+.
T Consensus       234 ~i~~~~~v~~i~~~~~~---~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~-~~~t~~  309 (470)
T 1dxl_A          234 KFKLKTKVVGVDTSGDG---VKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNE-RFSTNV  309 (470)
T ss_dssp             CEECSEEEEEEECSSSS---EEEEEEESSSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCT-TCBCSS
T ss_pred             EEEeCCEEEEEEEcCCe---EEEEEEecCCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECc-CCccCC
Confidence            99999999999987643   1244442112434679999999999999999873  3 467788889999999 688999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+|||+|||++. ++.++.|..||+.+|.+|..
T Consensus       310 ~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~g  341 (470)
T 1dxl_A          310 SGVYAIGDVIPG-PMLAHKAEEDGVACVEYLAG  341 (470)
T ss_dssp             TTEEECSTTSSS-CCCHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeccCCC-CccHHHHHHHHHHHHHHHcC
Confidence            999999999974 57888999999999999974

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=100.00  E-value=3.8e-35  Score=284.43  Aligned_cols=290  Identities=19%  Similarity=0.219  Sum_probs=210.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc--------------------ccCCCCCCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV--------------------ENFPGFPQGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~--------------------~~~~~~~~~~  117 (382)
                      .+||+|||||++|+++|..|++.|++|+|||+    ....||.+......                    ..++......
T Consensus         6 ~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~----~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~   81 (482)
T 1ojt_A            6 EYDVVVLGGGPGGYSAAFAAADEGLKVAIVER----YKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPEL   81 (482)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEES----SSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCeEEEEeC----CCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCcc
Confidence            58999999999999999999999999999994    34566654321100                    0011111123


Q ss_pred             ChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEEC-C------------eEEEcCEEEEccCCC
Q 016820          118 LGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD-S------------KSVLADTVIVATGAV  173 (382)
Q Consensus       118 ~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~-~------------~~~~~d~lvlA~G~~  173 (382)
                      ....+..           .+...+++.+++++.+++..++  ++.+.+.+. +            .+++||+||+|||++
T Consensus        82 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~  159 (482)
T 1ojt_A           82 DIDMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLD--PHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSR  159 (482)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEE--TTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEcc--CCEEEEEecCCcccccccccCcceEEEcCEEEECCCCC
Confidence            3333332           2345567789999998755543  456666532 3            469999999999999


Q ss_pred             CcCCC-CCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHH
Q 016820          174 AKKLQ-FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQ  247 (382)
Q Consensus       174 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~  247 (382)
                      |..|+ ++. +.   . +.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     .....
T Consensus       160 p~~~~~i~~-~~---~-v~~~~~~~~~--~~~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~l  232 (482)
T 1ojt_A          160 VTKLPFIPE-DP---R-IIDSSGALAL--KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVW  232 (482)
T ss_dssp             ECCCSSCCC-CT---T-EECHHHHTTC--CCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHH
T ss_pred             CCCCCCCCc-cC---c-EEcHHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccccCHHHHHHH
Confidence            98876 552 21   1 1122111222  23478999999999999999999999999999999887632     12233


Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceee
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIIT  324 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~v  324 (382)
                      .+.+++.||++++++++.+++.++++   ..+++.+. .+.+.++++|.|++++|++|++.++  + .++.++++|+|.|
T Consensus       233 ~~~l~~~gV~i~~~~~v~~i~~~~~~---~~v~~~~~-~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~v  308 (482)
T 1ojt_A          233 QKQNEYRFDNIMVNTKTVAVEPKEDG---VYVTFEGA-NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEV  308 (482)
T ss_dssp             HHHHGGGEEEEECSCEEEEEEEETTE---EEEEEESS-SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCC
T ss_pred             HHHHHhcCCEEEECCEEEEEEEcCCe---EEEEEecc-CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEee
Confidence            46678899999999999999987653   22444321 1113468899999999999999874  3 4677888899999


Q ss_pred             CCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          325 KPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       325 d~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+ +++|+.|+|||+|||++. ++.++.|..||+.+|.+|..
T Consensus       309 d~-~~~t~~~~IyA~GD~~~~-~~l~~~A~~~g~~aa~~i~g  348 (482)
T 1ojt_A          309 DK-QMRTNVPHIYAIGDIVGQ-PMLAHKAVHEGHVAAENCAG  348 (482)
T ss_dssp             CT-TSBCSSTTEEECGGGTCS-SCCHHHHHHHHHHHHHHHTT
T ss_pred             CC-CcccCCCCEEEEEcccCC-CccHHHHHHHHHHHHHHHcC
Confidence            99 788999999999999974 57889999999999999974

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=100.00  E-value=6.6e-36  Score=289.19  Aligned_cols=292  Identities=17%  Similarity=0.198  Sum_probs=201.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCccc-CCCC-C--CCC--ChHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVEN-FPGF-P--QGI--LGGDLMDRCRNQ  129 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~-~~~~-~--~~~--~~~~~~~~~~~~  129 (382)
                      ++||+|||||++|+++|..|++.  |++|+|||+..    ..+...  . .... +.+. +  ..+  ...++..+...+
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~----~~~~~~--~-gl~~~~~g~~~~~~~~~~~~~~~~~~~~~~   75 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQAS----RISYGG--C-GIPYYVSGEVSNIESLQATPYNVVRDPEFF   75 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC----cccccc--c-ccchhhcCCCCchHHhccccchhccCHHHH
Confidence            46999999999999999999999  99999999632    211000  0 0000 0000 0  000  011244555556


Q ss_pred             HHHcCcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCC
Q 016820          130 SLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAP  201 (382)
Q Consensus       130 ~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~  201 (382)
                      .++.+++++.+ +|+.++.+++.+.+..  ++.  .+.||+||+|||++|..|++||.+.   +................
T Consensus        76 ~~~~gi~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~l~  155 (472)
T 3iwa_A           76 RINKDVEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKANRPPVEGMDLAGVTPVTNLDEAEFVQHAIS  155 (472)
T ss_dssp             -----CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCSCTTTTSBTEEECCSHHHHHHHHHHCC
T ss_pred             hhhcCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCcCCCCCCCCCCCCEEEeCCHHHHHHHHHHhh
Confidence            66789998776 7999999988888775  233  6999999999999999999998752   11111111111111111


Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK  274 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~  274 (382)
                      ...+++++|||+|.+|+|+|..|.+. |.+|+++.+.+.+..      ......+.+++.||+++.++++.+++.++++ 
T Consensus       156 ~~~~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-  234 (472)
T 3iwa_A          156 AGEVSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMPGFTSKSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGK-  234 (472)
T ss_dssp             TTSCSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSSTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSB-
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccccccCHHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCe-
Confidence            13478999999999999999999999 999999999887643      1222345677899999999999999985543 


Q ss_pred             eeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc--------
Q 016820          275 VLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--------  345 (382)
Q Consensus       275 ~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--------  345 (382)
                       +. +.+.+   +  .++++|.|++|+|++|++.++. .++.++++|++.||+ +++|+.|||||+|||+..        
T Consensus       235 -v~-v~~~~---g--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~-~~~t~~~~Iya~GD~~~~~~~~~g~~  306 (472)
T 3iwa_A          235 -VA-RVITD---K--RTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDT-RMRTSDPDIFAGGDCVTIPNLVTGKP  306 (472)
T ss_dssp             -EE-EEEES---S--CEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCT-TCBCSSTTEEECGGGEEEEBTTTSSE
T ss_pred             -EE-EEEeC---C--CEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECC-CcccCCCCEEEeccceecccccCCce
Confidence             21 33332   3  4799999999999999988765 578888999999998 788999999999999831        


Q ss_pred             -hhhHHHHHHhhHHHHHHHHH
Q 016820          346 -KYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       346 -~~~~~~~a~~~g~~aa~~i~  365 (382)
                       .++.+..|..||+.+|.||.
T Consensus       307 ~~~~~~~~A~~~g~~aa~~i~  327 (472)
T 3iwa_A          307 GFFPLGSMANRQGRVIGTNLA  327 (472)
T ss_dssp             ECCCCTTHHHHHHHHHHHHHT
T ss_pred             eecchHHHHHHHHHHHHHHhc
Confidence             13577899999999999987

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=100.00  E-value=2e-35  Score=284.91  Aligned_cols=289  Identities=23%  Similarity=0.271  Sum_probs=208.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc-----------------CCCCC--CCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN-----------------FPGFP--QGIL  118 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~-----------------~~~~~--~~~~  118 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+.    . .||.|......+.                 ..+++  ....
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~~g~~V~lie~~----~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~   80 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQLGLKVLAVEAG----E-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELD   80 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS----C-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEEC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCC----C-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcC
Confidence            589999999999999999999999999999953    2 6776533211100                 00110  1123


Q ss_pred             hHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC-CCCCcccc
Q 016820          119 GGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ-FPGSDAFW  186 (382)
Q Consensus       119 ~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~-~~g~~~~~  186 (382)
                      ...+..+           +...+++.+++++.+++..++  .+.+.+  ++.++.||+||+|||++|+.|+ +++...  
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~--~~~v~v--~g~~~~~d~lViATGs~p~~p~gi~~~~~--  154 (464)
T 2eq6_A           81 LKKLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVG--PKEVEV--GGERYGAKSLILATGSEPLELKGFPFGED--  154 (464)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEE--TTEEEE--TTEEEEEEEEEECCCEEECCBTTBCCSSS--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcc--CCEEEE--ccEEEEeCEEEEcCCCCCCCCCCCCCCCc--
Confidence            3333222           344556789999999766665  344444  3567999999999999998876 666321  


Q ss_pred             CCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcC
Q 016820          187 NRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~  261 (382)
                         +......... ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||+++++
T Consensus       155 ---v~~~~~~~~l-~~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gV~i~~~  230 (464)
T 2eq6_A          155 ---VWDSTRALKV-EEGLPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEILPQGDPETAALLRRALEKEGIRVRTK  230 (464)
T ss_dssp             ---EECHHHHTCG-GGCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEECS
T ss_pred             ---EEcHHHHHhh-hhhcCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHhcCCEEEcC
Confidence               1111111111 011468999999999999999999999999999999887632     1222345677889999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceEE
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vya  338 (382)
                      +++.+++.++++   ..+.+....+++..++++|.|++|+|.+|+..++  + .++.++++|++.||+ .++|+.|+|||
T Consensus       231 ~~v~~i~~~~~~---~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~~~~Iya  306 (464)
T 2eq6_A          231 TKAVGYEKKKDG---LHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNA-RMETSVPGVYA  306 (464)
T ss_dssp             EEEEEEEEETTE---EEEEEEETTCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCT-TCBCSSTTEEE
T ss_pred             CEEEEEEEeCCE---EEEEEeecCCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECC-CcccCCCCEEE
Confidence            999999987653   1244432111333479999999999999999864  2 467788899999998 68899999999


Q ss_pred             ecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          339 AGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       339 ~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +|||++. +..++.|..||+.+|.+|..
T Consensus       307 ~GD~~~~-~~l~~~A~~~g~~aa~~i~g  333 (464)
T 2eq6_A          307 IGDAARP-PLLAHKAMREGLIAAENAAG  333 (464)
T ss_dssp             CGGGTCS-SCCHHHHHHHHHHHHHHHTT
T ss_pred             EeccCCC-cccHHHHHHHHHHHHHHhcC
Confidence            9999974 57888999999999999974

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-35  Score=284.44  Aligned_cols=289  Identities=18%  Similarity=0.163  Sum_probs=211.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------ccCC--CCC-----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------ENFP--GFP-----  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~~~~--~~~-----  114 (382)
                      .++||+|||||++|+++|..|++.|++|+|||+    . ..||.|....+.               ....  ++.     
T Consensus        10 ~~~dVvVIGgG~aGl~aA~~l~~~g~~V~liE~----~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~   84 (479)
T 2hqm_A           10 KHYDYLVIGGGSGGVASARRAASYGAKTLLVEA----K-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPL   84 (479)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTSCCEEEEES----S-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCC
T ss_pred             ccCCEEEEcCCHHHHHHHHHHHHCCCcEEEEeC----C-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccc
Confidence            358999999999999999999999999999995    2 467765421100               0000  110     


Q ss_pred             ----CCCChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECC-e--EEEcCEEEEccCCCCcC
Q 016820          115 ----QGILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDS-K--SVLADTVIVATGAVAKK  176 (382)
Q Consensus       115 ----~~~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~-~--~~~~d~lvlA~G~~~~~  176 (382)
                          .......+.+           .+...+++.+++++.+++..++  .+.+.+.+.+ .  ++.||+||+|||++|..
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~--~~~~~v~~~~g~~~~~~~d~lviAtGs~p~~  162 (479)
T 2hqm_A           85 DKEHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNK--DGNVEVQKRDNTTEVYSANHILVATGGKAIF  162 (479)
T ss_dssp             SGGGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECT--TSCEEEEESSSCCEEEEEEEEEECCCEEECC
T ss_pred             ccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEee--CCEEEEEeCCCcEEEEEeCEEEEcCCCCCCC
Confidence                1223333332           2344556779999999877664  3456666533 3  69999999999999999


Q ss_pred             C-CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHh
Q 016820          177 L-QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRA  250 (382)
Q Consensus       177 ~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~  250 (382)
                      | ++||.+...     .+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..     ......+.
T Consensus       163 p~~i~g~~~~~-----~~~~~~~l--~~~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~  235 (479)
T 2hqm_A          163 PENIPGFELGT-----DSDGFFRL--EEQPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGETVLRKFDECIQNTITDH  235 (479)
T ss_dssp             CTTSTTGGGSB-----CHHHHHHC--SSCCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHH
T ss_pred             CCCCCCccccc-----chHHHhcc--cccCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCccccccCHHHHHHHHHH
Confidence            8 899874311     11111111  23478999999999999999999999999999999887532     12223456


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh-hc-ccccccCCCceeeCCCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF-VD-GQLDLHSDGYIITKPGT  328 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~-~~-~~~~~~~~g~i~vd~~~  328 (382)
                      +++.||++++++++.+++.++++. +..+.+++   ++ ..+++|.|++++|++|++.+ ++ .++.++++|++.||+ +
T Consensus       236 l~~~Gv~i~~~~~v~~i~~~~~~~-~~~v~~~~---G~-~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~-~  309 (479)
T 2hqm_A          236 YVKEGINVHKLSKIVKVEKNVETD-KLKIHMND---SK-SIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADE-Y  309 (479)
T ss_dssp             HHHHTCEEECSCCEEEEEECC-CC-CEEEEETT---SC-EEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCT-T
T ss_pred             HHhCCeEEEeCCEEEEEEEcCCCc-EEEEEECC---Cc-EEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECC-C
Confidence            777899999999999998865431 12243322   32 57999999999999999955 33 578888899999999 6


Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ++|+.|+|||+|||++. +..+..|..||+.+|.+|..
T Consensus       310 ~~t~~~~IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~  346 (479)
T 2hqm_A          310 QNTNVPNIYSLGDVVGK-VELTPVAIAAGRKLSNRLFG  346 (479)
T ss_dssp             CBCSSTTEEECGGGTTS-SCCHHHHHHHHHHHHHHHHS
T ss_pred             CccCCCCEEEEEecCCC-cccHHHHHHHHHHHHHHhcC
Confidence            78999999999999864 56889999999999999874

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=100.00  E-value=1.3e-34  Score=279.78  Aligned_cols=286  Identities=24%  Similarity=0.283  Sum_probs=211.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc-----------------ccCC-CCC---CC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV-----------------ENFP-GFP---QG  116 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~-----------------~~~~-~~~---~~  116 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+    . ..||.|....+.                 ..+. +++   ..
T Consensus         4 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~----~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~   78 (467)
T 1zk7_A            4 PVQVAVIGSGGAAMAAALKAVEQGAQVTLIER----G-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPT   78 (467)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES----S-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEeC----C-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCc
Confidence            58999999999999999999999999999994    3 567765432110                 0111 111   12


Q ss_pred             CChHHHHH-------HH-----HHHHHHc-CcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCC
Q 016820          117 ILGGDLMD-------RC-----RNQSLRF-GTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       117 ~~~~~~~~-------~~-----~~~~~~~-gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      .....+..       ++     .+.+++. +++++.+++..++.  +.+.+.+++   .++.||+||+|||++|+.|++|
T Consensus        79 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~~v~~~~g~~~~~~~d~lviAtGs~p~~p~i~  156 (467)
T 1zk7_A           79 IDRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDD--QSLTVRLNEGGERVVMFDRCLVATGASPAVPPIP  156 (467)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEET--TEEEEEETTSSEEEEECSEEEECCCEEECCCCCT
T ss_pred             cCHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccC--CEEEEEeCCCceEEEEeCEEEEeCCCCCCCCCCC
Confidence            23333332       22     2344556 99999998877773  456666544   4699999999999999999999


Q ss_pred             CCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-h---HHHHHHhccCCCc
Q 016820          181 GSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-S---KIMQNRALTNPKI  256 (382)
Q Consensus       181 g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-~---~~~~~~~l~~~gv  256 (382)
                      |.+....  . ........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+.. .   .....+.+++.||
T Consensus       157 G~~~~~~--~-~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~Gv  231 (467)
T 1zk7_A          157 GLKESPY--W-TSTEALAS--DTIPERLAVIGSSVVALELAQAFARLGSKVTVLARNTLFFREDPAIGEAVTAAFRAEGI  231 (467)
T ss_dssp             TTTTSCC--B-CHHHHHHC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTSCHHHHHHHHHHHHHTTC
T ss_pred             CCCcCce--e-cHHHHhcc--cccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEECCccCCCCHHHHHHHHHHHHhCCC
Confidence            8764211  1 11111111  23478999999999999999999999999999999887532 1   1223456777899


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSV  333 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~  333 (382)
                      +++.++++.+++.+++.     +.+..   +. .++++|.|++|+|.+|+...+   ..++.++++|++.||+ .++|+.
T Consensus       232 ~i~~~~~v~~i~~~~~~-----~~v~~---~~-~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~-~~~t~~  301 (467)
T 1zk7_A          232 EVLEHTQASQVAHMDGE-----FVLTT---TH-GELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQ-GMRTSN  301 (467)
T ss_dssp             EEETTCCEEEEEEETTE-----EEEEE---TT-EEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCT-TCBCSS
T ss_pred             EEEcCCEEEEEEEeCCE-----EEEEE---CC-cEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECC-CcccCC
Confidence            99999999999886542     23333   22 479999999999999998753   2467778889999998 788999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+|||+|||+.. +..+..|+.||+.+|.+|..
T Consensus       302 ~~iya~GD~~~~-~~~~~~A~~~g~~aa~~i~~  333 (467)
T 1zk7_A          302 PNIYAAGDCTDQ-PQFVYVAAAAGTRAAINMTG  333 (467)
T ss_dssp             TTEEECSTTBSS-CCCHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEeccCCC-cccHHHHHHHHHHHHHHHcC
Confidence            999999999974 56788999999999999964

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=100.00  E-value=7.3e-36  Score=283.65  Aligned_cols=284  Identities=22%  Similarity=0.255  Sum_probs=206.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCC--eEEEecccCCCCCCCcce-ecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELK--PILFEGWMANDIAPGGQL-TTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~--v~lie~~~~~~~~~gg~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ++|+|||||++|+++|..|++.|++  |+|||+..    ..+... ......  +.+   .....++ .+..+.+.+.++
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~----~~~y~~~~l~~~~--~~g---~~~~~~~-~~~~~~~~~~~i   72 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEP----HLPYDRPSLSKAV--LDG---SLERPPI-LAEADWYGEARI   72 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSS----SSSBCSGGGGTHH--HHT---SSSSCCB-SSCTTHHHHTTC
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCC----CCCcCCccccHHH--hCC---CCCHHHh-cCCHHHHHHCCC
Confidence            5899999999999999999999988  99999532    111110 000000  000   0000111 112334466799


Q ss_pred             EEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEE
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVI  211 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~Vv  211 (382)
                      +++.+ +|+.++.+.+.+.+. ++.++.||+||+|||++|+.|++||.+.   +..+...........  ...+++++||
T Consensus        73 ~~~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~ipG~~~~~v~~~~~~~d~~~l~~~--~~~~~~vvVi  149 (410)
T 3ef6_A           73 DMLTGPEVTALDVQTRTISLD-DGTTLSADAIVIATGSRARTMALPGSQLPGVVTLRTYGDVQVLRDS--WTSATRLLIV  149 (410)
T ss_dssp             EEEESCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTTTSTTEECCCSHHHHHHHHHH--CCTTCEEEEE
T ss_pred             EEEeCCEEEEEECCCCEEEEC-CCCEEECCEEEEccCCcccCCCCCCccccceEEeccHHHHHHHHHH--hccCCeEEEE
Confidence            99999 899999887654442 4557999999999999999999998763   222222222222222  3457999999


Q ss_pred             cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEecc
Q 016820          212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV  285 (382)
Q Consensus       212 G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~  285 (382)
                      |+|.+|+|+|..|.+.|.+|+++++.+.+..      ......+.+++.||++++++.+.+++.++.   +..+++.+  
T Consensus       150 GgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~---~~~v~~~d--  224 (410)
T 3ef6_A          150 GGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFSGEGQ---LEQVMASD--  224 (410)
T ss_dssp             CCSHHHHHHHHHHHHTTCEEEEECSSSSSSHHHHCHHHHHHHHHHHHHHTCEEECSCCEEEEECSSS---CCEEEETT--
T ss_pred             CCCHHHHHHHHHHHhCCCeEEEEecCCccchhhcCHHHHHHHHHHHHHCCCEEEeCCEEEEEeccCc---EEEEEECC--
Confidence            9999999999999999999999999987642      122234567788999999999999988653   33455543  


Q ss_pred             CCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch--------hhHHHHHHhh
Q 016820          286 TGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK--------YRQAVTAAGT  356 (382)
Q Consensus       286 ~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~--------~~~~~~a~~~  356 (382)
                       +  .++++|.|++++|.+|++.++. .++..+  +++.||+ .++|++|+|||+|||+..+        +..+..|..|
T Consensus       225 -g--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~--~gi~vd~-~~~t~~~~IyA~GD~a~~~~~~g~~~~~~~~~~A~~q  298 (410)
T 3ef6_A          225 -G--RSFVADSALICVGAEPADQLARQAGLACD--RGVIVDH-CGATLAKGVFAVGDVASWPLRAGGRRSLETYMNAQRQ  298 (410)
T ss_dssp             -S--CEEECSEEEECSCEEECCHHHHHTTCCBS--SSEECCT-TSBCSSTTEEECGGGEEEEBTTSSEECCCCHHHHHHH
T ss_pred             -C--CEEEcCEEEEeeCCeecHHHHHhCCCccC--CeEEEcc-CeeECCCCEEEEEcceeccCCCCCeeeechHHHHHHH
Confidence             3  5799999999999999998776 466665  4599998 7789999999999998643        2347899999


Q ss_pred             HHHHHHHHHH
Q 016820          357 GCMAALEAEH  366 (382)
Q Consensus       357 g~~aa~~i~~  366 (382)
                      |+.+|.+|..
T Consensus       299 g~~aa~~i~g  308 (410)
T 3ef6_A          299 AAAVAAAILG  308 (410)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHcC
Confidence            9999999974

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=100.00  E-value=3.3e-35  Score=276.93  Aligned_cols=284  Identities=15%  Similarity=0.176  Sum_probs=208.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH-HHHHHHHHcC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD-RCRNQSLRFG  134 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g  134 (382)
                      ++||+|||||++|+++|..|++.|  .+|+|+|++.      |..+..+. ....  ++......++.. ++.+.+++.+
T Consensus         4 ~~dvvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~------g~~~~~~~-l~~~--~~~~~~~~~~~~~~~~~~~~~~~   74 (384)
T 2v3a_A            4 RAPLVIIGTGLAGYNLAREWRKLDGETPLLMITADD------GRSYSKPM-LSTG--FSKNKDADGLAMAEPGAMAEQLN   74 (384)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHTTCSSSCEEEECSSC------CCEECGGG-GGGT--TTTTCCHHHHEEECHHHHHHHTT
T ss_pred             CCcEEEECChHHHHHHHHHHHhhCCCCCEEEEECCC------CCccCccc-ccHH--HhCCCCHHHhhccCHHHHHHhCC
Confidence            479999999999999999999998  5689999531      22221111 1111  112233444433 4566667889


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEE
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      ++++.+ ++..++.+++.  +..+++++.||+||+|||++|..|++||.+.   +..+....+......  ...+++++|
T Consensus        75 v~~~~~~~v~~i~~~~~~--v~~~~~~~~~d~lviAtG~~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~v~V  150 (384)
T 2v3a_A           75 ARILTHTRVTGIDPGHQR--IWIGEEEVRYRDLVLAWGAEPIRVPVEGDAQDALYPINDLEDYARFRQA--AAGKRRVLL  150 (384)
T ss_dssp             CEEECSCCCCEEEGGGTE--EEETTEEEECSEEEECCCEEECCCCCBSTTTTCEEECSSHHHHHHHHHH--HTTCCEEEE
T ss_pred             cEEEeCCEEEEEECCCCE--EEECCcEEECCEEEEeCCCCcCCCCCCCcCcCCEEEECCHHHHHHHHHh--hccCCeEEE
Confidence            999877 68999877654  4446678999999999999999999988652   222333222222111  234799999


Q ss_pred             EcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          211 IGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       211 vG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      ||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.||+++.++++.+++.++++     +.+.. 
T Consensus       151 iGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~~~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~-----~~v~~-  224 (384)
T 2v3a_A          151 LGAGLIGCEFANDLSSGGYQLDVVAPCEQVMPGLLHPAAAKAVQAGLEGLGVRFHLGPVLASLKKAGEG-----LEAHL-  224 (384)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHTTTCEEEESCCEEEEEEETTE-----EEEEE-
T ss_pred             ECCCHHHHHHHHHHHhCCCeEEEEecCcchhhcccCHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCE-----EEEEE-
Confidence            99999999999999999999999999887532   1   223346677899999999999999987653     33333 


Q ss_pred             cCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---hhhHHHHHHhhHHHH
Q 016820          285 VTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---KYRQAVTAAGTGCMA  360 (382)
Q Consensus       285 ~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---~~~~~~~a~~~g~~a  360 (382)
                        .++.++++|.+++|+|.+|+..+++ .++..+ +| +.||+ +++|+.|+|||+|||+..   ....+..|..||+.+
T Consensus       225 --~~g~~i~~d~vv~a~G~~p~~~l~~~~g~~~~-~g-i~vd~-~~~t~~~~IyA~GD~~~~~~~~~~~~~~a~~~g~~~  299 (384)
T 2v3a_A          225 --SDGEVIPCDLVVSAVGLRPRTELAFAAGLAVN-RG-IVVDR-SLRTSHANIYALGDCAEVDGLNLLYVMPLMACARAL  299 (384)
T ss_dssp             --TTSCEEEESEEEECSCEEECCHHHHHTTCCBS-SS-EEECT-TCBCSSTTEEECGGGEEETTBCCCSHHHHHHHHHHH
T ss_pred             --CCCCEEECCEEEECcCCCcCHHHHHHCCCCCC-CC-EEECC-CCCCCCCCEEEeeeeeeECCCCcchHHHHHHHHHHH
Confidence              2235799999999999999998765 467666 57 99998 688999999999999842   233567789999999


Q ss_pred             HHHHH
Q 016820          361 ALEAE  365 (382)
Q Consensus       361 a~~i~  365 (382)
                      |.+|.
T Consensus       300 a~~i~  304 (384)
T 2v3a_A          300 AQTLA  304 (384)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            99986

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=100.00  E-value=4.6e-35  Score=284.00  Aligned_cols=287  Identities=20%  Similarity=0.215  Sum_probs=212.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc------------------cC--CCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE------------------NF--PGFPQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~--~~~~~~  116 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||+     ...||.+....+..                  .+  ......
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk-----~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~   99 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGALGKRVAIAEE-----YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPI   99 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-----SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCcCEEEEEeC-----CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCc
Confidence            468999999999999999999999999999994     35777654321100                  01  000011


Q ss_pred             CChH-----------HHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc-CCCCCCCcc
Q 016820          117 ILGG-----------DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK-KLQFPGSDA  184 (382)
Q Consensus       117 ~~~~-----------~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~-~~~~~g~~~  184 (382)
                      ....           .+...+...+.+.+++++.+++..++.  ..+.+..++..+.||++|+|||++|. .|+++|.+.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~--~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~  177 (484)
T 3o0h_A          100 FNWEKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDE--HTLELSVTGERISAEKILIATGAKIVSNSAIKGSDL  177 (484)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEET--TEEEETTTCCEEEEEEEEECCCEEECCC--CBTGGG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEecCCeEEEeCEEEEccCCCcccCCCCCCccc
Confidence            2222           233344555667799999998888863  33333225677999999999999998 888998764


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~  259 (382)
                      ....     ......  ...+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+..     ......+.+++.||+++
T Consensus       178 ~~~~-----~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~  250 (484)
T 3o0h_A          178 CLTS-----NEIFDL--EKLPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLILRNFDYDLRQLLNDAMVAKGISII  250 (484)
T ss_dssp             SBCT-----TTGGGC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEE
T ss_pred             cccH-----HHHHhH--HhcCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            2211     111111  23478999999999999999999999999999999886532     12222456777899999


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCce
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                      .++++.+++.++++     +.+..   .++.++++|.|++|+|++|+..++.   .++.++++|++.||+ .++|+.|+|
T Consensus       251 ~~~~V~~i~~~~~~-----v~v~~---~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~~~~I  321 (484)
T 3o0h_A          251 YEATVSQVQSTENC-----YNVVL---TNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDE-KMTTNVSHI  321 (484)
T ss_dssp             SSCCEEEEEECSSS-----EEEEE---TTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCT-TSBCSSTTE
T ss_pred             eCCEEEEEEeeCCE-----EEEEE---CCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECC-CCCCCCCCE
Confidence            99999999987654     33433   2235799999999999999998642   578889999999998 788999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      ||+|||++ .++.+..|..||+.+|.+|...
T Consensus       322 ya~GD~~~-~~~~~~~A~~~g~~aa~~i~~~  351 (484)
T 3o0h_A          322 WAVGDVTG-HIQLTPVAIHDAMCFVKNAFEN  351 (484)
T ss_dssp             EECGGGGT-SCCCHHHHHHHHHHHHHHHHC-
T ss_pred             EEEEecCC-CCcCHHHHHHHHHHHHHHHcCC
Confidence            99999997 3678999999999999999853

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=100.00  E-value=7.9e-36  Score=290.19  Aligned_cols=295  Identities=16%  Similarity=0.127  Sum_probs=212.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC----CCCCCCcceecCCCcc----------------cC--CCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA----NDIAPGGQLTTTSDVE----------------NF--PGFP  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~----~~~~~gg~~~~~~~~~----------------~~--~~~~  114 (382)
                      .+|||+|||+|++|+.+|..++++|.+|+|||+...    .....||+|....+.+                ..  .++.
T Consensus        41 ydYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi~  120 (542)
T 4b1b_A           41 YDYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGWK  120 (542)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCcc
Confidence            368999999999999999999999999999995321    1235788765433211                00  0110


Q ss_pred             ---CCCChHHHHHHH-----------HHHHHHcCcEEEEeeEEEEEecCCcEEEEE-----CCeEEEcCEEEEccCCCCc
Q 016820          115 ---QGILGGDLMDRC-----------RNQSLRFGTQIFTETVSKVDFKSRPFKVFT-----DSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       115 ---~~~~~~~~~~~~-----------~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~-----~~~~~~~d~lvlA~G~~~~  175 (382)
                         ...++..+.++.           ...+++.+|+++.+....+++  +.+.+..     +..+++++++|+|||++|.
T Consensus       121 ~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~--~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~  198 (542)
T 4b1b_A          121 FDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDK--NTVSYYLKGDLSKEETVTGKYILIATGCRPH  198 (542)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEET--TEEEEEEC--CCCEEEEEEEEEEECCCEEEC
T ss_pred             cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCC--CcceEeecccCCceEEEeeeeEEeccCCCCC
Confidence               012344444332           233456799999888777663  3444432     2245999999999999999


Q ss_pred             CCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch----HHHHHHhc
Q 016820          176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS----KIMQNRAL  251 (382)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~----~~~~~~~l  251 (382)
                      .|+.++...-   .....+.....  ...+++++|||+|.+|+|+|..+.++|.+||++.+...++..    ....++.|
T Consensus       199 ~P~~~~~~~~---~~~ts~~~l~l--~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~~~L~~~D~ei~~~l~~~l  273 (542)
T 4b1b_A          199 IPDDVEGAKE---LSITSDDIFSL--KKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRSIVLRGFDQQCAVKVKLYM  273 (542)
T ss_dssp             CCSSSBTHHH---HCBCHHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESSCSSTTSCHHHHHHHHHHH
T ss_pred             CCCcccCCCc---cccCchhhhcc--ccCCceEEEECCCHHHHHHHHHHHhcCCeEEEecccccccccchhHHHHHHHHH
Confidence            8865443320   01111111222  345899999999999999999999999999999886655321    22234678


Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCceeeCCCC
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGT  328 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~  328 (382)
                      ++.||+++.+..+.++...+++     +.+..   .++..+.+|.|++++|++||++.+.   .++.++..+++.+++++
T Consensus       274 ~~~gi~~~~~~~v~~~~~~~~~-----~~v~~---~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd~~  345 (542)
T 4b1b_A          274 EEQGVMFKNGILPKKLTKMDDK-----ILVEF---SDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIADHL  345 (542)
T ss_dssp             HHTTCEEEETCCEEEEEEETTE-----EEEEE---TTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCCTT
T ss_pred             HhhcceeecceEEEEEEecCCe-----EEEEE---cCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecccc
Confidence            8899999999999999998864     45544   2335678999999999999999776   36677777776544448


Q ss_pred             CcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          329 THTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      ++|+.|||||+|||++..+..++.|..+|+.++.++..
T Consensus       346 ~~Ts~p~IyAiGDv~~~~p~La~~A~~eg~~aa~~i~g  383 (542)
T 4b1b_A          346 SCTNIPSIFAVGDVAENVPELAPVAIKAGEILARRLFK  383 (542)
T ss_dssp             SBCSSTTEEECTTSBTTCCCCHHHHHHHHHHHHHHHHS
T ss_pred             ccccCCCeEEeccccCCchhHHHHHHHHHHHHHHHHhc
Confidence            99999999999999976678999999999999999863

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=100.00  E-value=7.9e-36  Score=287.12  Aligned_cols=290  Identities=19%  Similarity=0.215  Sum_probs=209.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccC-CCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENF-PGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      +||+|||||++|+++|..|++.  |.+|+|||+..    ..+...   .....+ .+........++...+.+.+++.++
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~----~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv   73 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMND----NISFLS---CGIALYLGKEIKNNDPRGLFYSSPEELSNLGA   73 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSS----CCCBCG---GGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC----CCCccc---ccchhhhcCCcccCCHHHhhhcCHHHHHHcCC
Confidence            4899999999999999999999  99999999632    111100   000000 0000000122222233445567899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEEC----CeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCc
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFTD----SKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~~----~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      +++.+ ++..++.+++.+.+...    +.++.||+||+|||++|+.|++||.+.   +..+...........  ...+++
T Consensus        74 ~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p~~p~i~g~~~~~v~~~~~~~~~~~~~~~--~~~~~~  151 (452)
T 2cdu_A           74 NVQMRHQVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKPTVPPIPGIDSSRVYLCKNYNDAKKLFEE--APKAKT  151 (452)
T ss_dssp             EEEESEEEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTSTTEEECSSHHHHHHHHHH--GGGCSE
T ss_pred             EEEeCCEEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCcCCCCCCCCCCCCEEEeCcHHHHHHHHHH--hccCCe
Confidence            99888 59999988887777641    346999999999999999999998753   111111111111111  235789


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      ++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.||++++++++.+++.++++  +..+  
T Consensus       152 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~--v~~v--  227 (452)
T 2cdu_A          152 ITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLYKYFDKEFTDILAKDYEAHGVNLVLGSKVAAFEEVDDE--IITK--  227 (452)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHHHTTCEEEESSCEEEEEEETTE--EEEE--
T ss_pred             EEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhhhhhhhhHHHHHHHHHHHCCCEEEcCCeeEEEEcCCCe--EEEE--
Confidence            99999999999999999999999999999887533   1   122345677899999999999999874432  2212  


Q ss_pred             EeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCch---------hhHHHH
Q 016820          282 KNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---------YRQAVT  352 (382)
Q Consensus       282 ~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~~~  352 (382)
                      ..  ++  .++++|.|++++|++|++.+++..+.++++|++.||+ +++|+.|+|||+|||+...         +..+..
T Consensus       228 ~~--~g--~~i~~D~vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~  302 (452)
T 2cdu_A          228 TL--DG--KEIKSDIAILCIGFRPNTELLKGKVAMLDNGAIITDE-YMHSSNRDIFAAGDSAAVHYNPTNSNAYIPLATN  302 (452)
T ss_dssp             ET--TS--CEEEESEEEECCCEEECCGGGTTTSCBCTTSCBCCCT-TSBCSSTTEEECSTTBCEEETTTTEEECCCCHHH
T ss_pred             Ee--CC--CEEECCEEEECcCCCCCHHHHHHhhhcCCCCCEEECC-CcCcCCCCEEEcceEEEeccccCCCeeecchHHH
Confidence            21  23  5799999999999999998876336777899999999 7899999999999999742         357899


Q ss_pred             HHhhHHHHHHHHHH
Q 016820          353 AAGTGCMAALEAEH  366 (382)
Q Consensus       353 a~~~g~~aa~~i~~  366 (382)
                      |..||+.+|.+|..
T Consensus       303 A~~~g~~aa~~i~g  316 (452)
T 2cdu_A          303 AVRQGRLVGLNLTE  316 (452)
T ss_dssp             HHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHHhCC
Confidence            99999999999973

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.4e-36  Score=287.50  Aligned_cols=285  Identities=21%  Similarity=0.234  Sum_probs=203.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCC-CCChHHHHHHHHH-HHHHc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ-GILGGDLMDRCRN-QSLRF  133 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~  133 (382)
                      ++||+|||||++|+++|..|++.  |++|+|||+..    ..+....      .+|.+.. .....++..+..+ +.++.
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~----~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~~~   72 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATE----WVSHAPC------GIPYVVEGLSTPDKLMYYPPEVFIKKR   72 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSS----CCC------------------------------CTHHHHT
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCC----ccccCCc------CCccccCCCCCHHHhhhcCHHHHHHhc
Confidence            47999999999999999999998  88999999532    2221100      0111111 1122334443333 33678


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEECCe--EEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCc
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFTDSK--SVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~~~~--~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      +++++.+ +|..++.+.  +.+.++++  ++.||+||+|||++|+.|++||.+.   +.......+...........+++
T Consensus        73 gi~v~~~~~v~~i~~~~--~~v~~~~g~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  150 (449)
T 3kd9_A           73 GIDLHLNAEVIEVDTGY--VRVRENGGEKSYEWDYLVFANGASPQVPAIEGVNLKGVFTADLPPDALAIREYMEKYKVEN  150 (449)
T ss_dssp             TCEEETTCEEEEECSSE--EEEECSSSEEEEECSEEEECCCEEECCCSCBTTTSTTEECSCSTHHHHHHHHHHSSSCCCE
T ss_pred             CcEEEecCEEEEEecCC--CEEEECCceEEEEcCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHHhcCCCe
Confidence            9999999 799997654  34555443  6999999999999999999998764   22222222222222211225789


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      ++|||+|.+|+|+|..|.+.|.+|+++++.+.+...      .....+.+++. |+++.++.+.+++.++.   +..+ +
T Consensus       151 vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~-v~i~~~~~v~~i~~~~~---v~~v-~  225 (449)
T 3kd9_A          151 VVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRRSFDKEVTDILEEKLKKH-VNLRLQEITMKIEGEER---VEKV-V  225 (449)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHHHHHHTTT-SEEEESCCEEEEECSSS---CCEE-E
T ss_pred             EEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhC-cEEEeCCeEEEEeccCc---EEEE-E
Confidence            999999999999999999999999999998876421      22234567777 99999999999987652   2212 2


Q ss_pred             EeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhhHHH
Q 016820          282 KNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYRQAV  351 (382)
Q Consensus       282 ~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~~~~  351 (382)
                      .+   +  .++++|.|++++|++|++.++. .++.++++|++.||+ +++|+.|+|||+|||+..         .++.+.
T Consensus       226 ~~---g--~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~~~G~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~l~~  299 (449)
T 3kd9_A          226 TD---A--GEYKAELVILATGIKPNIELAKQLGVRIGETGAIWTNE-KMQTSVENVYAAGDVAETRHVITGRRVWVPLAP  299 (449)
T ss_dssp             ET---T--EEEECSEEEECSCEEECCHHHHHTTCCBCTTSSBCCCT-TCBCSSTTEEECSTTBCEEBTTTCSEECCCCHH
T ss_pred             eC---C--CEEECCEEEEeeCCccCHHHHHhCCccCCCCCCEEECC-CCccCCCCEEEeeeeeeeccccCCceEEeccHH
Confidence            21   3  5799999999999999998776 578888999999998 788999999999999842         146889


Q ss_pred             HHHhhHHHHHHHHH
Q 016820          352 TAAGTGCMAALEAE  365 (382)
Q Consensus       352 ~a~~~g~~aa~~i~  365 (382)
                      .|..||+.+|.+|.
T Consensus       300 ~A~~~g~~aa~~i~  313 (449)
T 3kd9_A          300 AGNKMGYVAGSNIA  313 (449)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999999987

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=100.00  E-value=7.4e-36  Score=283.22  Aligned_cols=286  Identities=19%  Similarity=0.210  Sum_probs=209.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcc-eecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQ-LTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ++|+|||||++|+++|..|++.|+  +|+|||+..    ..... .......  +.   ......++..+..+.+.+.++
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~g~~~~V~lie~~~----~~~y~~~~l~~~~--l~---~~~~~~~~~~~~~~~~~~~~i   72 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQAKYPGRIALINDEK----HLPYQRPPLSKAY--LK---SGGDPNSLMFRPEKFFQDQAI   72 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCSCEEEECCSS----SSSBCSGGGGTGG--GG---SCCCTTSSBSSCHHHHHHTTE
T ss_pred             CCEEEEcChHHHHHHHHHHHhhCcCCCEEEEeCCC----CCCCCCccCCHHH--HC---CCCCHHHccCCCHHHHHhCCC
Confidence            689999999999999999999998  899999532    11111 1110000  00   011112222233445567899


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      +++..+|+.++.+.+.+.+. ++.++.||+||+|||++|+.|++||.+.   +..+....+......  ...+++++|||
T Consensus        73 ~~~~~~v~~id~~~~~v~~~-~g~~~~~d~lvlAtG~~p~~~~i~g~~~~~v~~~~~~~d~~~l~~~--~~~~~~vvViG  149 (404)
T 3fg2_P           73 ELISDRMVSIDREGRKLLLA-SGTAIEYGHLVLATGARNRMLDVPNASLPDVLYLRTLDESEVLRQR--MPDKKHVVVIG  149 (404)
T ss_dssp             EEECCCEEEEETTTTEEEES-SSCEEECSEEEECCCEEECCCCSTTTTSTTEECCSSHHHHHHHHHH--GGGCSEEEEEC
T ss_pred             EEEEEEEEEEECCCCEEEEC-CCCEEECCEEEEeeCCCccCCCCCCCCCCcEEEECCHHHHHHHHHH--hhcCCeEEEEC
Confidence            99887899999887755443 4567999999999999999999998653   222333333333222  33578999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT  286 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~  286 (382)
                      +|.+|+|+|..+.+.|.+|+++++.+.+..      ......+.+++.||++++++.+.+++.+++.  +..+++.+   
T Consensus       150 gG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~V~~~d---  224 (404)
T 3fg2_P          150 AGFIGLEFAATARAKGLEVDVVELAPRVMARVVTPEISSYFHDRHSGAGIRMHYGVRATEIAAEGDR--VTGVVLSD---  224 (404)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTE--EEEEEETT---
T ss_pred             CCHHHHHHHHHHHhCCCEEEEEeCCCcchhhccCHHHHHHHHHHHHhCCcEEEECCEEEEEEecCCc--EEEEEeCC---
Confidence            999999999999999999999999887632      1223345677899999999999999987642  44455543   


Q ss_pred             CceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchh---------hHHHHHHhh
Q 016820          287 GQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY---------RQAVTAAGT  356 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~---------~~~~~a~~~  356 (382)
                      +  .++++|.|++|+|.+|+..++. .++..+ +| +.||+ +++|+.|+|||+|||+..+.         ..+..|..|
T Consensus       225 G--~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~-~G-i~vd~-~~~t~~~~iya~GD~a~~~~~~~g~~~~~~~~~~A~~q  299 (404)
T 3fg2_P          225 G--NTLPCDLVVVGVGVIPNVEIAAAAGLPTA-AG-IIVDQ-QLLTSDPHISAIGDCALFESVRFGETMRVESVQNATDQ  299 (404)
T ss_dssp             S--CEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EEECT-TSBCSSTTEEECGGGEEEEETTTTEEECCCSHHHHHHH
T ss_pred             C--CEEEcCEEEECcCCccCHHHHHhCCCCCC-CC-EEECC-CcccCCCCEEEeecceeecCccCCceeeehHHHHHHHH
Confidence            3  5799999999999999998776 466665 44 99998 78899999999999986432         247899999


Q ss_pred             HHHHHHHHHH
Q 016820          357 GCMAALEAEH  366 (382)
Q Consensus       357 g~~aa~~i~~  366 (382)
                      |+.+|.+|..
T Consensus       300 g~~aa~~i~g  309 (404)
T 3fg2_P          300 ARCVAARLTG  309 (404)
T ss_dssp             HHHHHHHTTT
T ss_pred             HHHHHHHhCC
Confidence            9999999873

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=100.00  E-value=7.9e-36  Score=295.18  Aligned_cols=291  Identities=21%  Similarity=0.211  Sum_probs=212.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCccc-CCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVEN-FPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ++|+|||||++|+++|..|++.  +++|+|||+..    ..+..  .. .... +.+. .......+.+++..+.+++++
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~----~~~~~--~~-~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~i   73 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGE----YVSFA--NC-GLPYHISGE-IAQRSALVLQTPESFKARFNV   73 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSS----CSSBC--GG-GHHHHHTSS-SCCGGGGBCCCHHHHHHHHCC
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCC----Ccccc--cc-CchHHhcCC-cCChHHhhccCHHHHHHhcCc
Confidence            5899999999999999999999  89999999532    22210  00 0000 0010 011222344455666667899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE--CC--eEEEcCEEEEccCCCCcCCCCCCCcccc---CCCcceeeeccCCCCCCCCCc
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT--DS--KSVLADTVIVATGAVAKKLQFPGSDAFW---NRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lvlA~G~~~~~~~~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      +++.+ +|+.++.+.+.+.+..  ++  .++.||+||+|||++|+.|++||.+...   .+....+...........+++
T Consensus        74 ~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~ipG~~~~~v~~~~~~~~~~~l~~~~~~~~~~~  153 (565)
T 3ntd_A           74 EVRVKHEVVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAPIVPPIPGVDNPLTHSLRNIPDMDRILQTIQMNNVEH  153 (565)
T ss_dssp             EEETTEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTCCSTTEECCSSHHHHHHHHHHHHHTTCSE
T ss_pred             EEEECCEEEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCCCCCCCCCCCCCCEEEeCCHHHHHHHHHHHhhCCCCE
Confidence            99776 7999999988888775  12  2699999999999999999999986421   122221111111000234789


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEec------------
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGE------------  270 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~------------  270 (382)
                      ++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||++++++.+.+++.+            
T Consensus       154 vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~  233 (565)
T 3ntd_A          154 ATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMTPVDREMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGE  233 (565)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCTTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTC
T ss_pred             EEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccchhcCHHHHHHHHHHHHHCCCEEEeCCeEEEEecccccccccccccc
Confidence            99999999999999999999999999999887632     1222345677899999999999999874            


Q ss_pred             ------CCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccC
Q 016820          271 ------GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQ  343 (382)
Q Consensus       271 ------~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~  343 (382)
                            .++.    +.+..   .++.++++|.|++|+|++|++.++. .++.++++|++.||+ +++|+.|+|||+|||+
T Consensus       234 ~~~~~~~~~~----~~v~~---~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~  305 (565)
T 3ntd_A          234 DTAHQHIKGH----LSLTL---SNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNA-MMQTSDPAIYAVGDAV  305 (565)
T ss_dssp             CCTTCCTTCE----EEEEE---TTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCT-TCBCSSTTEEECGGGB
T ss_pred             ccccccCCCc----EEEEE---cCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECC-CcccCCCCEEEeeeeE
Confidence                  2221    33333   2235799999999999999988765 478888999999998 7889999999999998


Q ss_pred             Cc---------hhhHHHHHHhhHHHHHHHHH
Q 016820          344 DK---------KYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       344 ~~---------~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ..         .++.++.|..||+.+|.+|.
T Consensus       306 ~~~~~~~g~~~~~~~~~~A~~~g~~aa~~i~  336 (565)
T 3ntd_A          306 EEQDFVTGQACLVPLAGPANRQGRMAADNMF  336 (565)
T ss_dssp             CEEBTTTCCEECCCCHHHHHHHHHHHHHHHT
T ss_pred             eeccccCCceeecccHHHHHHHHHHHHHHhc
Confidence            31         13578999999999999997

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=100.00  E-value=3.7e-35  Score=283.18  Aligned_cols=286  Identities=19%  Similarity=0.256  Sum_probs=213.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cCCCC-----CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NFPGF-----PQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~~~~-----~~~  116 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||+     ..+||.|....+..               .++.+     ...
T Consensus         4 ~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-----~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~   78 (463)
T 4dna_A            4 FDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-----FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESR   78 (463)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-----SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCE
T ss_pred             CCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-----CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCC
Confidence            358999999999999999999999999999994     35777654321100               01111     011


Q ss_pred             CChH-----------HHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc-CCCCCCCcc
Q 016820          117 ILGG-----------DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK-KLQFPGSDA  184 (382)
Q Consensus       117 ~~~~-----------~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~-~~~~~g~~~  184 (382)
                      ....           .+...+...+++.+++++.+++..++.  ..+.+..++..+.||++|+|||++|. .|+++|.+.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~--~~v~~~~~~~~~~~d~lviAtG~~p~~~p~i~G~~~  156 (463)
T 4dna_A           79 FDWAKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGP--NTVKLLASGKTVTAERIVIAVGGHPSPHDALPGHEL  156 (463)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSS--SEEEETTTTEEEEEEEEEECCCEEECCCTTSTTGGG
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeC--CEEEEecCCeEEEeCEEEEecCCCcccCCCCCCccc
Confidence            2233           233334455566799999998777652  33333225677999999999999999 899998764


Q ss_pred             ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEE
Q 016820          185 FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVI  259 (382)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~  259 (382)
                      .+     ........  ...+++++|||+|.+|+|+|..+.+.|.+|+++.+.+.+..     ......+.+++.||+++
T Consensus       157 ~~-----~~~~~~~~--~~~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~  229 (463)
T 4dna_A          157 CI-----TSNEAFDL--PALPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGKEILSRFDQDMRRGLHAAMEEKGIRIL  229 (463)
T ss_dssp             CB-----CHHHHTTC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHTTCEEE
T ss_pred             cc-----cHHHHhhh--hcCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCCEEE
Confidence            21     11111122  33478999999999999999999999999999999886532     12223456788999999


Q ss_pred             cCceeEEEEecCCceeeeeEEEE-eccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCc
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVK-NLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~-~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      .++.+.+++.++++.    +.+. .   .++. +++|.|++|+|++|+..++  . .++.++++|++.||+ .++|+.||
T Consensus       230 ~~~~v~~i~~~~~~~----~~v~~~---~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~-~~~t~~~~  300 (463)
T 4dna_A          230 CEDIIQSVSADADGR----RVATTM---KHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDA-FSRTSTPG  300 (463)
T ss_dssp             CSCCEEEEEECTTSC----EEEEES---SSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCT-TCBCSSTT
T ss_pred             CCCEEEEEEEcCCCE----EEEEEc---CCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECc-CCCCCCCC
Confidence            999999999876542    2333 2   2234 9999999999999999863  2 578888999999998 67899999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+|||++ .++.++.|..||+.+|.+|..
T Consensus       301 iya~GD~~~-~~~~~~~A~~~g~~aa~~i~g  330 (463)
T 4dna_A          301 IYALGDVTD-RVQLTPVAIHEAMCFIETEYK  330 (463)
T ss_dssp             EEECSGGGS-SCCCHHHHHHHHHHHHHHHHS
T ss_pred             EEEEEecCC-CCCChHHHHHHHHHHHHHHcC
Confidence            999999997 467899999999999999973

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=7.1e-35  Score=283.57  Aligned_cols=285  Identities=19%  Similarity=0.228  Sum_probs=201.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------c--CCCCC--CCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------N--FPGFP--QGIL  118 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~--~~~~~--~~~~  118 (382)
                      ++||+|||||++|+++|..|++.|++|+|||+.     ..||.|....+..               .  ..++.  ....
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~g~~V~liE~~-----~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~   76 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAARHNAKVALVEKS-----RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFN   76 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEeCC-----CcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccC
Confidence            479999999999999999999999999999953     3677654321100               0  00111  1233


Q ss_pred             hHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEE------------CCeEEEcCEEEEccCCCCc
Q 016820          119 GGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFT------------DSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       119 ~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~------------~~~~~~~d~lvlA~G~~~~  175 (382)
                      ..++.           ..+.+.+++.+++++.+++..++.  +.+.+..            ++.++.||+||+|||++|.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~--~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p~  154 (500)
T 1onf_A           77 LPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSE--NRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  154 (500)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeC--CEEEEEeccccccccccCCCceEEEeCEEEECCCCCCC
Confidence            33332           233445567899999987666553  3455532            1346899999999999999


Q ss_pred             CCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHh
Q 016820          176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRA  250 (382)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~  250 (382)
                      .|++||.+..     ..+......  .. +++++|||+|.+|+|+|..|.++|.+|+++++.+.+..     ......+.
T Consensus       155 ~p~i~G~~~~-----~~~~~~~~~--~~-~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~  226 (500)
T 1onf_A          155 FPPVKGIENT-----ISSDEFFNI--KE-SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEND  226 (500)
T ss_dssp             CCSCTTGGGC-----EEHHHHTTC--CC-CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHH
T ss_pred             CCCCCCCCcc-----cCHHHHhcc--CC-CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCCccCcccchhhHHHHHHH
Confidence            9999987421     111111122  12 78999999999999999999999999999999887532     12223466


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEE-EecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD-LKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKP  326 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~-~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~  326 (382)
                      +++.||++++++++.+++.++++.  ..+.+.+   +  .+ +++|.|++++|++|+++.+  . .++.+ ++|++.||+
T Consensus       227 l~~~gv~i~~~~~v~~i~~~~~~~--~~v~~~~---g--~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~  298 (500)
T 1onf_A          227 MKKNNINIVTFADVVEIKKVSDKN--LSIHLSD---G--RIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDE  298 (500)
T ss_dssp             HHHTTCEEECSCCEEEEEESSTTC--EEEEETT---S--CEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECT
T ss_pred             HHhCCCEEEECCEEEEEEEcCCce--EEEEECC---C--cEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECC
Confidence            778999999999999999865431  1233322   3  34 9999999999999999643  3 46777 789999999


Q ss_pred             CCCcCCCCceEEecccCC---------------------------------chhhHHHHHHhhHHHHHHHHHH
Q 016820          327 GTTHTSVPGVFAAGDVQD---------------------------------KKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       327 ~~~~t~~~~vya~GD~~~---------------------------------~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                       +++|+.|+|||+|||+.                                 ..+..+..|+.||+.+|.||..
T Consensus       299 -~~~t~~~~iya~GD~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~g~~aa~~i~g  370 (500)
T 1onf_A          299 -NQRTSVNNIYAVGDCCMVKKSKEIEDLNLLKLYNEERYLNKKENVTEDIFYNVQLTPVAINAGRLLADRLFL  370 (500)
T ss_dssp             -TCBCSSSSEEECSTTEEEC------------------------------CBCCCCHHHHHHHHHHHHHHHHS
T ss_pred             -CcccCCCCEEEEeccccccccccccccccccccccccccccccccccccCCcccchhHHHHHHHHHHHHHhC
Confidence             67899999999999981                                 2456789999999999999974

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=100.00  E-value=4.5e-35  Score=284.30  Aligned_cols=291  Identities=21%  Similarity=0.234  Sum_probs=210.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCC---------------cccCCCC--C---CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSD---------------VENFPGF--P---QG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~---------------~~~~~~~--~---~~  116 (382)
                      ..+||+|||||++|+++|..|+++|++|+|||+.     ..||.|....+               ..+++.+  +   ..
T Consensus         7 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~-----~~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~   81 (492)
T 3ic9_A            7 INVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGG-----AYGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRIS   81 (492)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESS-----CSSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEE
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC-----CCCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCc
Confidence            3589999999999999999999999999999952     37877642111               0111111  1   12


Q ss_pred             CChHHHHHHHHHHHHH-----------c-CcEEEEeeEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          117 ILGGDLMDRCRNQSLR-----------F-GTQIFTETVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~-----------~-gi~~~~~~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ....++.+++.+...+           . +++++.++....+  ..  .+.. ++.++.||+||+|||++|..|++++..
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~--~~--~v~~~~~~~~~~d~lViATGs~p~~p~~~~~~  157 (492)
T 3ic9_A           82 VNGKAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLD--EH--TLQVDDHSQVIAKRIVIATGSRPNYPEFLAAA  157 (492)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEE--TT--EEEETTTEEEEEEEEEECCCEECCCCHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEec--CC--EEEEcCCcEEEeCEEEEccCCCCcCCCCCCcc
Confidence            3555555555443322           1 4556666655554  22  3444 566799999999999999988765532


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEE
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDV  258 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~  258 (382)
                      .   ..+..+......  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++. |++
T Consensus       158 ~---~~v~t~~~~~~~--~~~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~d~~~~~~l~~~l~~~-V~i  231 (492)
T 3ic9_A          158 G---SRLLTNDNLFEL--NDLPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANLQDEEMKRYAEKTFNEE-FYF  231 (492)
T ss_dssp             G---GGEECHHHHTTC--SSCCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTCCCHHHHHHHHHHHHTT-SEE
T ss_pred             C---CcEEcHHHHhhh--hhcCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCcccccCCHHHHHHHHHHHhhC-cEE
Confidence            2   222223322333  34579999999999999999999999999999999987632     122223556666 999


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCc
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPG  335 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~  335 (382)
                      ++++.+.+++.++++  + .+.+.+ .+++..++++|.|++++|++|++.++  . .++.++++|++.||+.+++|+.|+
T Consensus       232 ~~~~~v~~i~~~~~~--v-~v~~~~-~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~~~t~~~~  307 (492)
T 3ic9_A          232 DAKARVISTIEKEDA--V-EVIYFD-KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFDELTLQTSVDH  307 (492)
T ss_dssp             ETTCEEEEEEECSSS--E-EEEEEC-TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCCTTTCBCSSTT
T ss_pred             EECCEEEEEEEcCCE--E-EEEEEe-CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeECcccccCCCCC
Confidence            999999999987654  1 133331 12434689999999999999999874  3 578889999999994488999999


Q ss_pred             eEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          336 VFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       336 vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      |||+|||++. ++.++.|+.||+.+|.+|..+
T Consensus       308 IyA~GD~~~~-~~~~~~A~~~g~~aa~~i~~~  338 (492)
T 3ic9_A          308 IFVAGDANNT-LTLLHEAADDGKVAGTNAGAY  338 (492)
T ss_dssp             EEECGGGGTS-SCSHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEecCCC-CccHHHHHHHHHHHHHHHcCC
Confidence            9999999974 578899999999999999854

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=100.00  E-value=4.5e-36  Score=287.54  Aligned_cols=299  Identities=17%  Similarity=0.157  Sum_probs=214.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHH---cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR---AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~---~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      .+||||||||++|+++|..|++   .|++|+|||+..        .+........+.  .......++...+.+.+++.|
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~--------~~~~~~~~~~~~--~g~~~~~~~~~~l~~~~~~~g   73 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISAND--------YFQFVPSNPWVG--VGWKERDDIAFPIRHYVERKG   73 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSS--------EEECGGGHHHHH--HTSSCHHHHEEECHHHHHTTT
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCC--------CCcccCCccccc--cCccCHHHHHHHHHHHHHHCC
Confidence            3699999999999999999999   799999999531        111000000000  012345666667788888899


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCC-----CcceeeeccC-CCCCCCCCcE
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNR-----GISACAVCDG-AAPIFRDKPL  208 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~-----~~~~~~~~~~-~~~~~~~~~v  208 (382)
                      ++++.++|+.++.+++.+.+. ++.++.||+||+|+|++|+.+.+||.+.....     .......... ......++++
T Consensus        74 v~~~~~~v~~id~~~~~V~~~-~g~~i~~d~lviAtG~~~~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  152 (437)
T 3sx6_A           74 IHFIAQSAEQIDAEAQNITLA-DGNTVHYDYLMIATGPKLAFENVPGSDPHEGPVQSICTVDHAERAFAEYQALLREPGP  152 (437)
T ss_dssp             CEEECSCEEEEETTTTEEEET-TSCEEECSEEEECCCCEECGGGSTTCSTTTSSEECCSSHHHHHHHHHHHHHHHHSCCC
T ss_pred             CEEEEeEEEEEEcCCCEEEEC-CCCEEECCEEEECCCCCcCcccCCCCCcccCcceecccccHHHHHHHHHHHHHhCCCE
Confidence            999988999999887744432 34569999999999999999999998753211     1111111100 0001113457


Q ss_pred             EEEcCCch----H--HHHH----HHHhhcCCE-----EEEEEeCCCC--------cchHHHHHHhccCCCcEEEcCceeE
Q 016820          209 AVIGGGDS----A--MEEA----NFLTKYGSK-----VYIIHRRDSF--------RASKIMQNRALTNPKIDVIWNSVVL  265 (382)
Q Consensus       209 ~VvG~G~~----a--~e~a----~~l~~~g~~-----v~~~~~~~~~--------~~~~~~~~~~l~~~gv~~~~~~~v~  265 (382)
                      +|||+|+.    |  +|+|    ..+.+.|.+     |+++++.+.+        .......++.+++.||+++.++.+.
T Consensus       153 vVVGgG~~~g~~G~~~E~a~~la~~l~~~g~~~~~~~Vtlv~~~~~~~~~~l~~~~~~~~~~~~~l~~~gI~~~~~~~v~  232 (437)
T 3sx6_A          153 IVIGAMAGASCFGPAYEYAMIVASDLKKRGMRDKIPSFTFITSEPYIGHLGIQGVGDSKGILTKGLKEEGIEAYTNCKVT  232 (437)
T ss_dssp             EEEEECTTCCCCHHHHHHHHHHHHHHHHTTCGGGCSCEEEEESSSSTTCTTTTCCTTHHHHHHHHHHHTTCEEECSEEEE
T ss_pred             EEEEcCCCCCcCcHHHHHHHHHHHHHHHcCCcccCcEEEEEcCCccccccccCcchHHHHHHHHHHHHCCCEEEcCCEEE
Confidence            88998654    3  7777    555566754     9999998865        1234444577888999999999999


Q ss_pred             EEEecCCceeeeeEEEEecc-CCc---eEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcC-CCCceEEe
Q 016820          266 EAYGEGDKKVLGGLKVKNLV-TGQ---VSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHT-SVPGVFAA  339 (382)
Q Consensus       266 ~i~~~~~g~~~~~v~~~~~~-~~~---~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t-~~~~vya~  339 (382)
                      +++.+.       +.+.+.. +++   +.++++|.+++++|++++..+.. .++ .+++|++.||+ ++++ ++|||||+
T Consensus       233 ~v~~~~-------v~~~~~~~~g~~~~~~~i~~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~-~l~t~~~~~Ifa~  303 (437)
T 3sx6_A          233 KVEDNK-------MYVTQVDEKGETIKEMVLPVKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDE-HQRSKKYANIFAA  303 (437)
T ss_dssp             EEETTE-------EEEEEECTTSCEEEEEEEECSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCT-TSBBSSCTTEEEC
T ss_pred             EEECCe-------EEEEecccCCccccceEEEEeEEEEcCCCcCchhhhccccc-cCCCCcEEeCh-hccCCCCCCEEEE
Confidence            998653       5554321 121   57899999999999998876654 355 67899999999 5666 89999999


Q ss_pred             cccCCc-----------hhhHHHHHHhhHHHHHHHHHHHHHHccCccc
Q 016820          340 GDVQDK-----------KYRQAVTAAGTGCMAALEAEHYLQEIGSQED  376 (382)
Q Consensus       340 GD~~~~-----------~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~  376 (382)
                      |||+..           .++++..|+.||+.+|.||..+|.++++.++
T Consensus       304 GD~~~~~~~~~~~~~~~~pk~~~~A~~qg~~aA~ni~~~l~g~~~~~~  351 (437)
T 3sx6_A          304 GIAIAIPPVETTPVPTGAPKTGYMIESMVSAAVHNIKADLEGRKGEQT  351 (437)
T ss_dssp             GGGBCCCCSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHTTTSCCCCC
T ss_pred             EEEeccCCcCCCcCCCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            999863           2678999999999999999999999876653

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=100.00  E-value=5.6e-36  Score=297.33  Aligned_cols=292  Identities=20%  Similarity=0.224  Sum_probs=216.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCccc-CCCCCCCCChHHHHHHHHHHHHH
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVEN-FPGFPQGILGGDLMDRCRNQSLR  132 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  132 (382)
                      +.+++|+|||||++|+++|..|++.  |++|+|||+..    ..+.  ... .... +.+. .......+..++.++.++
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~----~~~~--~~~-~lp~~~~g~-~~~~~~~~~~~~~~~~~~  105 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGE----YISF--ANC-GLPYYIGGV-ITERQKLLVQTVERMSKR  105 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSS----CSSB--CGG-GHHHHHTTS-SCCGGGGBSSCHHHHHHH
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCC----Cccc--cCC-CCchhhcCc-CCChHHhhccCHHHHHHh
Confidence            3457999999999999999999999  89999999532    2210  000 0000 0111 001122345567777788


Q ss_pred             cCcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcCCCCCCCcc----ccCCCcceeeeccCCCCCC
Q 016820          133 FGTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKKLQFPGSDA----FWNRGISACAVCDGAAPIF  203 (382)
Q Consensus       133 ~gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~  203 (382)
                      ++++++.+ +|+.++.+++.+.+..  ++.  .+.||+||+|||++|+.|++||.+.    +..+....+..........
T Consensus       106 ~gi~v~~~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~~v~~~~~~~~~~~~~~~l~~~  185 (588)
T 3ics_A          106 FNLDIRVLSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKPIVPSIPGIEEAKALFTLRNVPDTDRIKAYIDEK  185 (588)
T ss_dssp             TTCEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCTTTTTCTTEEECSSHHHHHHHHHHHHHH
T ss_pred             cCcEEEECCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCCCCCCCCCcccCCCeEEeCCHHHHHHHHHHHhhc
Confidence            89999876 7999999988888764  344  6899999999999999999998732    1122222221111110013


Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      .+++++|||+|.+|+|+|..|.+.|.+|+++.+.+.+...     .....+.+++.||+++.++.+.+++.++++     
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~-----  260 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPPIDYEMAAYVHEHMKNHDVELVFEDGVDALEENGAV-----  260 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE-----
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCcccccCCHHHHHHHHHHHHHcCCEEEECCeEEEEecCCCE-----
Confidence            4789999999999999999999999999999998876331     222346677899999999999999886542     


Q ss_pred             EEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---------hhh
Q 016820          279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---------KYR  348 (382)
Q Consensus       279 v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---------~~~  348 (382)
                      +.+.+   +  .++++|.|++|+|++|++.+++ .++.++++|++.||+ +++|+.|+|||+|||+..         .++
T Consensus       261 v~~~~---g--~~i~~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~  334 (588)
T 3ics_A          261 VRLKS---G--SVIQTDMLILAIGVQPESSLAKGAGLALGVRGTIKVNE-KFQTSDPHIYAIGDAIEVKDFVTETETMIP  334 (588)
T ss_dssp             EEETT---S--CEEECSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCT-TSBCSSTTEEECGGGBCEEBTTTCCEECCC
T ss_pred             EEECC---C--CEEEcCEEEEccCCCCChHHHHhcCceEcCCCCEEECC-ccccCCCCEEEeeeeeecccccCCcccccc
Confidence            55533   3  5799999999999999998775 578888899999998 789999999999999841         146


Q ss_pred             HHHHHHhhHHHHHHHHHH
Q 016820          349 QAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       349 ~~~~a~~~g~~aa~~i~~  366 (382)
                      .++.|..||+.+|.+|..
T Consensus       335 ~~~~A~~~g~~aa~~i~g  352 (588)
T 3ics_A          335 LAWPANRQGRMLADIIHG  352 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHHhcC
Confidence            889999999999999873

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=100.00  E-value=1.5e-34  Score=278.39  Aligned_cols=278  Identities=21%  Similarity=0.217  Sum_probs=210.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHH---cCCC---eEEEecccCCCCCCCcceecCCC-------------------------c
Q 016820           59 TKVCIIGSGPAAHTAAIYAAR---AELK---PILFEGWMANDIAPGGQLTTTSD-------------------------V  107 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~---~g~~---v~lie~~~~~~~~~gg~~~~~~~-------------------------~  107 (382)
                      +||+|||||++|+++|..|++   .|++   |+|||    +...+||.|.....                         .
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E----~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~   78 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFE----KQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKEC   78 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEEC----SSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGG
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEE----cCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhh
Confidence            689999999999999999999   9999   99999    44556776653210                         0


Q ss_pred             ccCCCC----------CCCCChHHHHHHHHHHHHHcCcE--EEEe-eEEEEEecCC--cEEEEEC----C--eEEEcCEE
Q 016820          108 ENFPGF----------PQGILGGDLMDRCRNQSLRFGTQ--IFTE-TVSKVDFKSR--PFKVFTD----S--KSVLADTV  166 (382)
Q Consensus       108 ~~~~~~----------~~~~~~~~~~~~~~~~~~~~gi~--~~~~-~v~~i~~~~~--~~~v~~~----~--~~~~~d~l  166 (382)
                      ..++.+          +..+...++.++++++++++++.  ++.+ +|+.++.+++  .|.+...    +  .++.||+|
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~V  158 (464)
T 2xve_A           79 LEFADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYV  158 (464)
T ss_dssp             TCBTTBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEE
T ss_pred             cccCCCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEE
Confidence            011111          23456688999999999999987  7666 7999988766  5666543    2  46899999


Q ss_pred             EEccC--CCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchH
Q 016820          167 IVATG--AVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASK  244 (382)
Q Consensus       167 vlA~G--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~  244 (382)
                      |+|||  +.|+.|.+||.+.+....++...+.+..  ...+++|+|||+|.+|+|+|..|.+.+++|+++.+++.+....
T Consensus       159 VvAtG~~s~p~~p~ipG~~~~~g~~~hs~~~~~~~--~~~~k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~~~~  236 (464)
T 2xve_A          159 VCCTGHFSTPYVPEFEGFEKFGGRILHAHDFRDAL--EFKDKTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPMGYK  236 (464)
T ss_dssp             EECCCSSSSBCCCCCBTTTTCCSEEEEGGGCCCGG--GGTTSEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCCCCC
T ss_pred             EECCCCCCCCccCCCCCcccCCceEEehhhhCCHh--HcCCCEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCCCCC
Confidence            99999  7899999999877655556655554443  4568999999999999999999999999999999987653211


Q ss_pred             HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc--cccccCCCce
Q 016820          245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG--QLDLHSDGYI  322 (382)
Q Consensus       245 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~--~~~~~~~g~i  322 (382)
                            + ..||+++  ..|.+++.+  +     |.+.+   +  ..+++|.||+|||++|+.+++..  ++..+++|++
T Consensus       237 ------~-~~~V~~~--~~V~~i~~~--~-----V~~~d---G--~~i~~D~Vi~atG~~p~~~~l~~~~gl~~~~~~~v  295 (464)
T 2xve_A          237 ------W-PENWDER--PNLVRVDTE--N-----AYFAD---G--SSEKVDAIILCTGYIHHFPFLNDDLRLVTNNRLWP  295 (464)
T ss_dssp             ------C-CTTEEEC--SCEEEECSS--E-----EEETT---S--CEEECSEEEECCCBCCCCTTBCTTTCCCCCSSSCC
T ss_pred             ------C-CCceEEc--CCeEEEeCC--E-----EEECC---C--CEEeCCEEEECCCCCCCCCCcCcccccccCCCccc
Confidence                  1 3588876  678888643  1     66653   4  46899999999999999998863  4555555565


Q ss_pred             -eeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          323 -ITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       323 -~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                       ....+.++|+.|+||++||+...  .....|..||+.+|.++.
T Consensus       296 ~~~~~~~~~t~~p~i~aiGd~~~~--~~~~~a~~qa~~~a~~l~  337 (464)
T 2xve_A          296 LNLYKGVVWEDNPKFFYIGMQDQW--YSFNMFDAQAWYARDVIM  337 (464)
T ss_dssp             SSEETTTEESSSTTEEECSCSCCS--SCHHHHHHHHHHHHHHHT
T ss_pred             ccccceEecCCCCCEEEEeCcccc--cchHHHHHHHHHHHHHHc
Confidence             23344567899999999999863  356778888888888775

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=100.00  E-value=4.7e-35  Score=281.92  Aligned_cols=286  Identities=21%  Similarity=0.218  Sum_probs=210.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc----------------cCCCCC---CCCCh
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE----------------NFPGFP---QGILG  119 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~----------------~~~~~~---~~~~~  119 (382)
                      +||+|||||++|+++|..|++.|++|+|||    +...+||.+.......                ...+++   .....
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~V~lie----~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~   77 (455)
T 2yqu_A            2 YDLLVIGAGPGGYVAAIRAAQLGMKVGVVE----KEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDL   77 (455)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEE----SSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECH
T ss_pred             CCEEEECCChhHHHHHHHHHHCCCeEEEEe----CCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCH
Confidence            799999999999999999999999999999    4445677654221100                000110   01222


Q ss_pred             HHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCC
Q 016820          120 GDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNR  188 (382)
Q Consensus       120 ~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~  188 (382)
                      .++..           .+.+.+++.+++++.+++..++  .+.+.+.+++.++.||+||+|||++|..|+++|.+.   .
T Consensus        78 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~--~~~~~v~~~g~~~~~d~lviAtG~~p~~~~~~g~~~---~  152 (455)
T 2yqu_A           78 PALMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLS--ERKVLVEETGEELEARYILIATGSAPLIPPWAQVDY---E  152 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESS--SSEEEETTTCCEEEEEEEEECCCEEECCCTTBCCCS---S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEec--CCeEEEeeCCEEEEecEEEECCCCCCCCCCCCCCCc---C
Confidence            33322           2345566779999998765543  445555434567999999999999999888887543   1


Q ss_pred             CcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCc
Q 016820          189 GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNS  262 (382)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~  262 (382)
                      .+.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..      ...+ .+.+++.||+++.++
T Consensus       153 ~v~~~~~~~~~--~~~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~~l~~~~~~~~~~l-~~~l~~~Gv~i~~~~  229 (455)
T 2yqu_A          153 RVVTSTEALSF--PEVPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDRILPTMDLEVSRAA-ERVFKKQGLTIRTGV  229 (455)
T ss_dssp             SEECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHH-HHHHHHHTCEEECSC
T ss_pred             cEechHHhhcc--ccCCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCccccccCHHHHHHH-HHHHHHCCCEEEECC
Confidence            11111111112  23468999999999999999999999999999999887532      2223 455677899999999


Q ss_pred             eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCCCceEEe
Q 016820          263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vya~  339 (382)
                      ++.+++.++++     +.+..   .++.++++|.+++|+|.+|+..++  + .++.++++|++.||+ .++|+.|+||++
T Consensus       230 ~V~~i~~~~~~-----v~v~~---~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~-~~~t~~~~iya~  300 (455)
T 2yqu_A          230 RVTAVVPEAKG-----ARVEL---EGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDE-HLRTRVPHIYAI  300 (455)
T ss_dssp             CEEEEEEETTE-----EEEEE---TTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCT-TSBCSSTTEEEC
T ss_pred             EEEEEEEeCCE-----EEEEE---CCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECC-CcccCCCCEEEE
Confidence            99999987653     44443   223579999999999999998763  3 467777789999999 688999999999


Q ss_pred             cccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          340 GDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       340 GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+.. ++.+..|..||+.+|.+|..
T Consensus       301 GD~~~~-~~~~~~A~~~g~~aa~~i~~  326 (455)
T 2yqu_A          301 GDVVRG-PMLAHKASEEGIAAVEHMVR  326 (455)
T ss_dssp             GGGSSS-CCCHHHHHHHHHHHHHHHHH
T ss_pred             ecCCCC-ccCHHHHHHhHHHHHHHHcC
Confidence            999974 57888999999999999985

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=6.5e-36  Score=279.56  Aligned_cols=279  Identities=23%  Similarity=0.222  Sum_probs=201.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..||+|||||+||+++|..|++.| +|+|||+..    ..+.  . ......+  .......+++..+..+.+++.++++
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~g-~V~lie~~~----~~~~--~-~~~l~~~--~~g~~~~~~~~~~~~~~~~~~~v~~   77 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQTY-EVTVIDKEP----VPYY--S-KPMLSHY--IAGFIPRNRLFPYSLDWYRKRGIEI   77 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTTS-EEEEECSSS----SCCC--C-STTHHHH--HTTSSCGGGGCSSCHHHHHHHTEEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhhcC-CEEEEECCC----CCcc--c-cchhHHH--HhCCCCHHHhccCCHHHHHhCCcEE
Confidence            368999999999999999999999 999999632    1110  0 0000000  0011223333333445567789999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc-cCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF-WNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      +.+ +|+.++++...+.  .++.++.||+||+|||++|+.|++||.+.. ..+...........  ...+++++|||+|.
T Consensus        78 ~~g~~v~~id~~~~~V~--~~g~~~~~d~lViATGs~p~~p~i~G~~~v~~~~~~~~~~~l~~~--~~~~~~vvViGgG~  153 (367)
T 1xhc_A           78 RLAEEAKLIDRGRKVVI--TEKGEVPYDTLVLATGARAREPQIKGKEYLLTLRTIFDADRIKES--IENSGEAIIIGGGF  153 (367)
T ss_dssp             ECSCCEEEEETTTTEEE--ESSCEEECSEEEECCCEEECCCCSBTGGGEECCCSHHHHHHHHHH--HHHHSEEEEEECSH
T ss_pred             EECCEEEEEECCCCEEE--ECCcEEECCEEEECCCCCCCCCCCCCcCCEEEEcCHHHHHHHHHH--hhcCCcEEEECCCH
Confidence            998 6999998765443  566789999999999999999999984321 11122111111111  11358999999999


Q ss_pred             hHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEE
Q 016820          216 SAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD  291 (382)
Q Consensus       216 ~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~  291 (382)
                      +|+|+|..|.+.|.+|+++++.+.+..    ......+.+++.||++++++++.+++.+       .+.+++     +. 
T Consensus       154 ~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-------~v~~~~-----g~-  220 (367)
T 1xhc_A          154 IGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEE-------GVLTNS-----GF-  220 (367)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHHHHHHHHTTEEEECSCCEEEECSS-------EEEETT-----EE-
T ss_pred             HHHHHHHHHHhCCCEEEEEeCCCeeccCCHHHHHHHHHHHHHCCCEEEcCCEEEEEEee-------EEEECC-----CE-
Confidence            999999999999999999999887532    1222345677889999999999999832       155532     34 


Q ss_pred             EecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---hhhHHHHHHhhHHHHHHHHHH
Q 016820          292 LKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---KYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       292 ~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +++|.+++++|++|++.+++ .++..+ + ++.||+ +++|+.|||||+|||+..   .++.+..|..||+.+|.+|..
T Consensus       221 i~~D~vi~a~G~~p~~~ll~~~gl~~~-~-gi~Vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~~i~g  296 (367)
T 1xhc_A          221 IEGKVKICAIGIVPNVDLARRSGIHTG-R-GILIDD-NFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLADILKG  296 (367)
T ss_dssp             EECSCEEEECCEEECCHHHHHTTCCBS-S-SEECCT-TSBCSSTTEEECGGGEEBTTBCCCSHHHHHHHHHHHHHHHTT
T ss_pred             EEcCEEEECcCCCcCHHHHHhCCCCCC-C-CEEECC-CcccCCCCEEEeEeeeecCCCCccHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998765 456554 3 499998 788999999999999742   246889999999999999973

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=100.00  E-value=7.8e-37  Score=287.20  Aligned_cols=274  Identities=19%  Similarity=0.194  Sum_probs=202.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc-ceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG-QLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      .++.+|||||||+||+++|..|...+.+|+|||++    ...+. ....+    .+  +......+++..+..+++++++
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~----~~~~y~~~~l~----~~--l~g~~~~~~l~~~~~~~~~~~~   76 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSE----KYLPYYRPRLN----EI--IAKNKSIDDILIKKNDWYEKNN   76 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSS----SSCCBCGGGHH----HH--HHSCCCGGGTBSSCHHHHHHTT
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECC----CCCCcccChhh----HH--HcCCCCHHHccCCCHHHHHHCC
Confidence            35689999999999999999998789999999953    22221 10000    00  0011223344445556667889


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc-ccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA-FWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                      ++++.+ +|+.|+++++.+++. ++.++.||+||+|||++|+.|++||.+. +..+...........  ...+++++|||
T Consensus        77 i~~~~~~~V~~id~~~~~v~~~-~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~--l~~~~~vvVIG  153 (385)
T 3klj_A           77 IKVITSEFATSIDPNNKLVTLK-SGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDE--CKNKGKAFIIG  153 (385)
T ss_dssp             CEEECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHH--HHHHSCEEEEC
T ss_pred             CEEEeCCEEEEEECCCCEEEEC-CCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHH--hhcCCeEEEEC
Confidence            999988 799999988755443 4567999999999999999999999762 111222222111111  12268999999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCcch------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFRAS------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT  286 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~  286 (382)
                      +|.+|+|+|..|.+.|.+|+++++.+.+...      ....++.+++.||+++.+..+.++                   
T Consensus       154 gG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i-------------------  214 (385)
T 3klj_A          154 GGILGIELAQAIIDSGTPASIGIILEYPLERQLDRDGGLFLKDKLDRLGIKIYTNSNFEEM-------------------  214 (385)
T ss_dssp             CSHHHHHHHHHHHHHTCCEEEECSSSSSCTTTSCHHHHHHHHHHHHTTTCEEECSCCGGGC-------------------
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEEcCCccchhhcCHHHHHHHHHHHHhCCCEEEeCCEEEEc-------------------
Confidence            9999999999999999999999998876321      223356678899999998877554                   


Q ss_pred             CceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCc---hhhHHHHHHhhHHHHHH
Q 016820          287 GQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK---KYRQAVTAAGTGCMAAL  362 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~---~~~~~~~a~~~g~~aa~  362 (382)
                        +.++++|.|++++|++|++.++. .++..+  +.+.||+ +++|+.|+|||+|||+..   .++.+..|..||+.+|.
T Consensus       215 --g~~~~~D~vv~a~G~~p~~~~~~~~gl~~~--~gi~vd~-~~~t~~~~IyA~GD~a~~~~~~~~~~~~A~~qg~~aa~  289 (385)
T 3klj_A          215 --GDLIRSSCVITAVGVKPNLDFIKDTEIASK--RGILVND-HMETSIKDIYACGDVAEFYGKNPGLINIANKQGEVAGL  289 (385)
T ss_dssp             --HHHHHHSEEEECCCEEECCGGGTTSCCCBS--SSEEECT-TCBCSSTTEEECGGGEEETTBCCCCHHHHHHHHHHHHH
T ss_pred             --CeEEecCeEEECcCcccChhhhhhcCCCcC--CCEEECC-CcccCCCCEEEEEeeEecCCCcccHHHHHHHHHHHHHH
Confidence              13588999999999999998876 355554  4499998 788999999999999863   25688999999999999


Q ss_pred             HHHH
Q 016820          363 EAEH  366 (382)
Q Consensus       363 ~i~~  366 (382)
                      +|..
T Consensus       290 ~i~g  293 (385)
T 3klj_A          290 NACG  293 (385)
T ss_dssp             HHTT
T ss_pred             HhcC
Confidence            9974

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=100.00  E-value=7.7e-35  Score=278.15  Aligned_cols=287  Identities=17%  Similarity=0.171  Sum_probs=203.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCc-ceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGG-QLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      .+||+|||||++|+++|..|++.|.  +|+|||+..    .... ......   .+..  ......++.....+.+++.+
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~g~~~~V~lie~~~----~~~~~~~~l~~---~~~~--~~~~~~~~~~~~~~~~~~~g   74 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDAT----VIPHHLPPLSK---AYLA--GKATAESLYLRTPDAYAAQN   74 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCC----SCCBCSGGGGT---TTTT--TCSCSGGGBSSCHHHHHHTT
T ss_pred             CCcEEEEcCHHHHHHHHHHHHccCcCCCEEEEECCC----CCCCcCCCCcH---HHhC--CCCChHHhcccCHHHHHhCC
Confidence            4799999999999999999999998  799999531    1111 000000   0100  00111122112234456789


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcccc------CCCcceeeeccCCCCCCCCCc
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFW------NRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      ++++.+ +|..++.+++.+.+. ++.++.||+||+|||++|+.|++||.+...      .+....+......  ...+++
T Consensus        75 v~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~p~~~~i~G~~~~~~~~v~~~~~~~d~~~l~~~--l~~~~~  151 (431)
T 1q1r_A           75 IQLLGGTQVTAINRDRQQVILS-DGRALDYDRLVLATGGRPRPLPVASGAVGKANNFRYLRTLEDAECIRRQ--LIADNR  151 (431)
T ss_dssp             EEEECSCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTHHHHSTTEEESSSHHHHHHHHHT--CCTTCE
T ss_pred             CEEEeCCEEEEEECCCCEEEEC-CCCEEECCEEEEcCCCCccCCCCCCcccCCCceEEEECCHHHHHHHHHH--hhcCCe
Confidence            999988 689999876644432 455799999999999999999998865211      1122222122222  335799


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEe--cCCceeeeeE
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYG--EGDKKVLGGL  279 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~--~~~g~~~~~v  279 (382)
                      ++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.||++++++.+.+++.  ++++  +..+
T Consensus       152 vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~--v~~v  229 (431)
T 1q1r_A          152 LVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQK--VTAV  229 (431)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECSCCEEEEEECTTTCC--EEEE
T ss_pred             EEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccchhhHHHHHHHHHHHHhCCeEEEeCCEEEEEEeccCCCc--EEEE
Confidence            99999999999999999999999999999876532   1   12234567778999999999999987  3332  3334


Q ss_pred             EEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchh---------hH
Q 016820          280 KVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY---------RQ  349 (382)
Q Consensus       280 ~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~---------~~  349 (382)
                      .+.+   +  ..+++|.|++++|.+|++.++. .++..+ +| +.||+ +++|+.|+|||+|||+..+.         ..
T Consensus       230 ~~~~---G--~~i~~D~Vv~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~-~~~ts~~~IyA~GD~~~~~~~~~g~~~~~~~  301 (431)
T 1q1r_A          230 LCED---G--TRLPADLVIAGIGLIPNCELASAAGLQVD-NG-IVINE-HMQTSDPLIMAVGDCARFHSQLYDRWVRIES  301 (431)
T ss_dssp             EETT---S--CEEECSEEEECCCEEECCHHHHHTTCCBS-SS-EECCT-TSBCSSTTEEECGGGEEEEETTTTEEEECCS
T ss_pred             EeCC---C--CEEEcCEEEECCCCCcCcchhhccCCCCC-CC-EEECC-CcccCCCCEEEEEeEEEEccccCCceEeeCH
Confidence            4432   3  5799999999999999988776 456664 44 99998 78899999999999986431         25


Q ss_pred             HHHHHhhHHHHHHHHHH
Q 016820          350 AVTAAGTGCMAALEAEH  366 (382)
Q Consensus       350 ~~~a~~~g~~aa~~i~~  366 (382)
                      +..|..||+.+|.+|..
T Consensus       302 ~~~A~~qg~~aa~~i~g  318 (431)
T 1q1r_A          302 VPNALEQARKIAAILCG  318 (431)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            78899999999999963

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=100.00  E-value=6.1e-35  Score=277.00  Aligned_cols=279  Identities=18%  Similarity=0.222  Sum_probs=200.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcc-eecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQ-LTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      ..+||+|||||++|+++|..|++.|.  +|+|||+..    ..+.. ........  .+   .. .+++  ++. .+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~lie~~~----~~~~~~~~~~~~~~--~~---~~-~~~~--~~~-~~~~~   72 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQAGYQGLITVVGDEA----ERPYDRPPLSKDFM--AH---GD-AEKI--RLD-CKRAP   72 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSC----SCCBCSGGGGTHHH--HH---CC-GGGS--BCC-CTTSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHccCCCCeEEEEECCC----CCcccCCCCCHHHh--CC---Cc-hhhh--hHH-HHHHC
Confidence            45799999999999999999999998  499999531    11100 00000000  00   00 0000  011 34567


Q ss_pred             CcEEEEee-EEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC-CCCcc--ccCCCcceeeeccCCCCCCCCCcEE
Q 016820          134 GTQIFTET-VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF-PGSDA--FWNRGISACAVCDGAAPIFRDKPLA  209 (382)
Q Consensus       134 gi~~~~~~-v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~-~g~~~--~~~~~~~~~~~~~~~~~~~~~~~v~  209 (382)
                      +++++.++ |+.++.+.+.+.+. ++.++.||+||+|||++|+.|++ ||.+.  +..+...........  ...+++++
T Consensus        73 ~v~~~~~~~v~~i~~~~~~v~~~-~g~~~~~d~lviAtG~~~~~~~i~~G~~~~v~~~~~~~~~~~l~~~--~~~~~~vv  149 (408)
T 2gqw_A           73 EVEWLLGVTAQSFDPQAHTVALS-DGRTLPYGTLVLATGAAPRALPTLQGATMPVHTLRTLEDARRIQAG--LRPQSRLL  149 (408)
T ss_dssp             SCEEEETCCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECCCGGGTTCSSCEEECCSHHHHHHHHTT--CCTTCEEE
T ss_pred             CCEEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCccCCCCCcEEEECCHHHHHHHHHH--hhcCCeEE
Confidence            99999994 99999876544432 45579999999999999999988 88652  111222222222222  33579999


Q ss_pred             EEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       210 VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      |||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.||+++.++++.+++ ++      .+++.+
T Consensus       150 ViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i~-~~------~v~~~~  222 (408)
T 2gqw_A          150 IVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFVARYHAAQGVDLRFERSVTGSV-DG------VVLLDD  222 (408)
T ss_dssp             EECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEE-TT------EEEETT
T ss_pred             EECCCHHHHHHHHHHHhCCCEEEEEEeCCcccccccCHHHHHHHHHHHHHcCcEEEeCCEEEEEE-CC------EEEECC
Confidence            999999999999999999999999999887632   1   2223456778899999999999998 32      265543


Q ss_pred             ccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCchh---------hHHHHH
Q 016820          284 LVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY---------RQAVTA  353 (382)
Q Consensus       284 ~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~---------~~~~~a  353 (382)
                         +  .++++|.+++++|.+|++.++. .++..+ +| +.||+ +++|+.|+|||+|||+..+.         ..+..|
T Consensus       223 ---g--~~i~~D~vi~a~G~~p~~~l~~~~gl~~~-~g-i~Vd~-~~~t~~~~IyA~GD~~~~~~~~~g~~~~~~~~~~A  294 (408)
T 2gqw_A          223 ---G--TRIAADMVVVGIGVLANDALARAAGLACD-DG-IFVDA-YGRTTCPDVYALGDVTRQRNPLSGRFERIETWSNA  294 (408)
T ss_dssp             ---S--CEEECSEEEECSCEEECCHHHHHHTCCBS-SS-EECCT-TCBCSSTTEEECGGGEEEEETTTTEEECCCCHHHH
T ss_pred             ---C--CEEEcCEEEECcCCCccHHHHHhCCCCCC-CC-EEECC-CCccCCCCEEEEEEEEEecCccCCceeeccHHHHH
Confidence               3  5799999999999999988776 466665 45 99998 78899999999999986431         267899


Q ss_pred             HhhHHHHHHHHHH
Q 016820          354 AGTGCMAALEAEH  366 (382)
Q Consensus       354 ~~~g~~aa~~i~~  366 (382)
                      +.||+.+|.+|..
T Consensus       295 ~~~g~~aa~~i~g  307 (408)
T 2gqw_A          295 QNQGIAVARHLVD  307 (408)
T ss_dssp             HHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhcC
Confidence            9999999999974

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=100.00  E-value=8.8e-35  Score=279.40  Aligned_cols=289  Identities=22%  Similarity=0.245  Sum_probs=207.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccC-CCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENF-PGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      +||+|||||++|+++|..|+++  |.+|+|||+..    ..+..   ......+ .+.  .....++..++.+.+++.|+
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~----~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~gv   71 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGD----FISFL---SAGMQLYLEGK--VKDVNSVRYMTGEKMESRGV   71 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSS----SSSBC---GGGHHHHHTTS--SCCGGGSBSCCHHHHHHTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCC----ccCcc---cccchhhhcCc--cCCHHHhhcCCHHHHHHCCC
Confidence            4899999999999999999998  99999999632    22210   0000000 000  01122223333445567799


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCCCc
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRDKP  207 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~~~  207 (382)
                      +++.+ .+..++.+++.+.+..  ++.  ++.||+||+|||++|+.|++||.+.   +..+................+++
T Consensus        72 ~~~~~~~v~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~~~  151 (447)
T 1nhp_A           72 NVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFELDIPGKDLDNIYLMRGRQWAIKLKQKTVDPEVNN  151 (447)
T ss_dssp             EEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCSTTTTSBSEECCCHHHHHHHHHHHHTCTTCCE
T ss_pred             EEEECCEEEEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCcCCCCCCCCCCCCeEEECCHHHHHHHHHHhhhcCCCe
Confidence            99777 6889998888777765  233  4899999999999999999998753   11111111110111100115789


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      ++|||+|.+|+|+|..|.+.|.+|+++++.+.+..   .   .....+.+++.||++++++.+.+++.++.   +..+.+
T Consensus       152 vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~---v~~v~~  228 (447)
T 1nhp_A          152 VVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR---VQKVVT  228 (447)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSB---CCEEEE
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEecCcccccccCCHHHHHHHHHHHHhCCCEEEcCCEEEEEEccCc---EEEEEE
Confidence            99999999999999999999999999999886532   1   12234567789999999999999987632   222332


Q ss_pred             EeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCch---------hhHHHH
Q 016820          282 KNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---------YRQAVT  352 (382)
Q Consensus       282 ~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~~~  352 (382)
                       +   +  .++++|.|++|+|.+|+..++...+.++++|++.||+ +++|+.|+|||+|||+...         +..+..
T Consensus       229 -~---~--~~i~~d~vi~a~G~~p~~~~~~~~~~~~~~G~i~Vd~-~~~t~~~~Iya~GD~~~~~~~~~g~~~~~~~~~~  301 (447)
T 1nhp_A          229 -D---K--NAYDADLVVVAVGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFAVGDATLIKYNPADTEVNIALATN  301 (447)
T ss_dssp             -S---S--CEEECSEEEECSCEEESCGGGTTTSCBCTTSCBCCCT-TCBCSSTTEEECGGGSCEEEGGGTEEECCCCHHH
T ss_pred             -C---C--CEEECCEEEECcCCCCChHHHHhhhhhcCCCcEEECc-cccCCCCCEEEeeeEEEeeccCCCCceechhHHH
Confidence             1   3  4699999999999999998776336677889999999 7889999999999999632         357899


Q ss_pred             HHhhHHHHHHHHHH
Q 016820          353 AAGTGCMAALEAEH  366 (382)
Q Consensus       353 a~~~g~~aa~~i~~  366 (382)
                      |..||+.+|.+|..
T Consensus       302 A~~qg~~aa~~i~g  315 (447)
T 1nhp_A          302 ARKQGRFAVKNLEE  315 (447)
T ss_dssp             HHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHHhhcC
Confidence            99999999999863

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=100.00  E-value=4.7e-34  Score=274.92  Aligned_cols=283  Identities=23%  Similarity=0.286  Sum_probs=206.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc---------------cC-----CCCC--
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE---------------NF-----PGFP--  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~---------------~~-----~~~~--  114 (382)
                      .++||+|||||++|+++|..|++.|++|+|||+     ...||+|....+..               .+     .+++  
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-----~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~   78 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-----QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVA   78 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-----SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-----CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccC
Confidence            458999999999999999999999999999994     35777654221100               00     1111  


Q ss_pred             -CCCChHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC-CCC
Q 016820          115 -QGILGGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ-FPG  181 (382)
Q Consensus       115 -~~~~~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~-~~g  181 (382)
                       ......++..+           +...+++.+++++.+++..++  .+.  +..++.++.||+||+|||++|+.|+ ++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~--~~~--v~v~~~~~~~d~lviATGs~p~~~~~~~~  154 (458)
T 1lvl_A           79 SPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLD--GKQ--VEVDGQRIQCEHLLLATGSSSVELPMLPL  154 (458)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEE--TTE--EEETTEEEECSEEEECCCEEECCBTTBCC
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEcc--CCE--EEEeeEEEEeCEEEEeCCCCCCCCCCCCc
Confidence             12344444433           335567789999999766654  343  4444577999999999999987765 442


Q ss_pred             CccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCc
Q 016820          182 SDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKI  256 (382)
Q Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv  256 (382)
                       +.   . +.........  ...+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..     ......+.+++.||
T Consensus       155 -~~---~-v~~~~~~~~~--~~~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~gv  227 (458)
T 1lvl_A          155 -GG---P-VISSTEALAP--KALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGI  227 (458)
T ss_dssp             -BT---T-EECHHHHTCC--SSCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTC
T ss_pred             -cC---c-EecHHHHhhh--hccCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCccccccCHHHHHHHHHHHHHCCC
Confidence             21   1 1111111112  23478999999999999999999999999999999887632     11222456777899


Q ss_pred             EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--c-ccccccCCCceeeCCCCCcCCC
Q 016820          257 DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--D-GQLDLHSDGYIITKPGTTHTSV  333 (382)
Q Consensus       257 ~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~  333 (382)
                      +++.++++.+++. ++      +.+.. .+++..++++|.+++++|.+|+..++  + .++.++++ ++.||+ .++|+.
T Consensus       228 ~i~~~~~v~~i~~-~~------v~v~~-~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~-~~~t~~  297 (458)
T 1lvl_A          228 ALHLGHSVEGYEN-GC------LLAND-GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDE-RCQTSM  297 (458)
T ss_dssp             EEETTCEEEEEET-TE------EEEEC-SSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCT-TCBCSS
T ss_pred             EEEECCEEEEEEe-CC------EEEEE-CCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECC-CCcCCC
Confidence            9999999999987 32      44442 12333579999999999999998863  3 46777777 999998 688999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |+|||+|||+.. ++.+..|..||+.+|.+|..
T Consensus       298 ~~Iya~GD~~~~-~~~~~~A~~~g~~aa~~i~g  329 (458)
T 1lvl_A          298 HNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIAG  329 (458)
T ss_dssp             TTEEECGGGGCS-SCCHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEeeccCCC-cccHHHHHHHHHHHHHHhcC
Confidence            999999999974 57889999999999999973

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=100.00  E-value=7.7e-34  Score=282.40  Aligned_cols=298  Identities=18%  Similarity=0.187  Sum_probs=209.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEeccc----CCCCCCCcceecCCCcc------------------cCC-CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWM----ANDIAPGGQLTTTSDVE------------------NFP-GF  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~----~~~~~~gg~~~~~~~~~------------------~~~-~~  113 (382)
                      ..+||+|||||+||+++|..|+++|++|+|||+..    ...+..||.+......+                  .+. .+
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g~~~  185 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFGWSL  185 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCCccc
Confidence            46899999999999999999999999999999521    11224677643222110                  000 01


Q ss_pred             C---CCCChHHHHHHHHHH-----------HHHcCcEEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcC
Q 016820          114 P---QGILGGDLMDRCRNQ-----------SLRFGTQIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       114 ~---~~~~~~~~~~~~~~~-----------~~~~gi~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~  176 (382)
                      +   ......++.++++..           +.+.+++++.+.+..++.  ..+.+.+++   .++.||+||+|||++|+.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~--~~v~v~~~~g~~~~~~~d~lviAtGs~p~~  263 (598)
T 2x8g_A          186 DRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISP--HEVQITDKNQKVSTITGNKIILATGERPKY  263 (598)
T ss_dssp             CGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEET--TEEEEECTTCCEEEEEEEEEEECCCEEECC
T ss_pred             cCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCC--CEEEEEeCCCCeEEEEeCEEEEeCCCCCCC
Confidence            1   134455665554433           345689998887777763  344554433   358999999999999999


Q ss_pred             CCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHHHHhcc
Q 016820          177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQNRALT  252 (382)
Q Consensus       177 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~~~~l~  252 (382)
                      |++||.+.+..    ........  ...+++++|||+|.+|+|+|..|.+.|.+||++++...++.    ......+.++
T Consensus       264 p~i~G~~~~~~----~~~~~~~~--~~~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~~~~l~  337 (598)
T 2x8g_A          264 PEIPGAVEYGI----TSDDLFSL--PYFPGKTLVIGASYVALECAGFLASLGGDVTVMVRSILLRGFDQQMAEKVGDYME  337 (598)
T ss_dssp             CSSTTHHHHCE----EHHHHTTC--SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSCSSTTSCHHHHHHHHHHHH
T ss_pred             CCCCCcccceE----cHHHHhhC--ccCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCcCcCcCCHHHHHHHHHHHH
Confidence            99999754211    11111111  23468999999999999999999999999999998732221    1222245677


Q ss_pred             CCCcEEEcCceeEEEEec-----CC---ceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccccccCCCc
Q 016820          253 NPKIDVIWNSVVLEAYGE-----GD---KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQLDLHSDGY  321 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~-----~~---g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~~~~~~g~  321 (382)
                      +.||+++++..+.++...     .+   +. + .+.+.. .+++...+++|.|++++|++|++.++.   .++.++++|+
T Consensus       338 ~~gv~i~~~~~v~~v~~~~~~~~~~~~~~~-~-~v~~~~-~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~  414 (598)
T 2x8g_A          338 NHGVKFAKLCVPDEIKQLKVVDTENNKPGL-L-LVKGHY-TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGR  414 (598)
T ss_dssp             HTTCEEEETEEEEEEEEEECCBTTTTBCCE-E-EEEEEE-TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSC
T ss_pred             hCCCEEEECCeEEEEEeccccccccCCCce-E-EEEEEe-CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCc
Confidence            789999999988888643     11   21 1 122222 124334566999999999999998642   4677888999


Q ss_pred             eeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          322 IITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       322 i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +.||+ .++|+.|+|||+|||+...+..+..|+.+|+.+|.+|..
T Consensus       415 i~vd~-~~~ts~~~VyA~GD~~~~~~~~~~~A~~~g~~aa~~i~~  458 (598)
T 2x8g_A          415 VVCTD-DEQTTVSNVYAIGDINAGKPQLTPVAIQAGRYLARRLFA  458 (598)
T ss_dssp             BCCCT-TSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             EEeCC-CCcCCCCCEEEEeeecCCCCccHHHHHHhHHHHHHHHhc
Confidence            99999 688999999999999654467889999999999999874

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=100.00  E-value=1.5e-34  Score=280.02  Aligned_cols=290  Identities=20%  Similarity=0.249  Sum_probs=207.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCc-ceecCCCcccCCCCCCCCChHHHHHHHHHHH-HHc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGG-QLTTTSDVENFPGFPQGILGGDLMDRCRNQS-LRF  133 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  133 (382)
                      .+||+|||||++|+++|..|++.  |.+|+|||+..    ..+. .+..+.   ...+.  .....++..+..+.+ ++.
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~----~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~~~~~~  106 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGE----IYSYAQCGLPY---VISGA--IASTEKLIARNVKTFRDKY  106 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSS----CCSBCGGGHHH---HHTTS--SSCGGGGBSSCHHHHHHTT
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCC----CCCCCCCCcch---hhcCC--cCCHHHhhhcCHHHHHhhc
Confidence            36999999999999999999997  89999999532    2211 110000   00000  011223222222333 456


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeeccCCCCCCCC
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVCDGAAPIFRD  205 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~~~~~~~~~~  205 (382)
                      +++++.+ +|..++.+++.+.+..  ++.  ++.||+||+|||++|+.|++||.+.   +...................+
T Consensus       107 gv~~~~~~~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p~~p~i~G~~~~~v~~~~~~~~~~~l~~~~~~~~~  186 (480)
T 3cgb_A          107 GIDAKVRHEVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRPVMPEWEGRDLQGVHLLKTIPDAERILKTLETNKV  186 (480)
T ss_dssp             CCEEESSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCCCCBTTTSBTEECCSSHHHHHHHHHHHHSSCC
T ss_pred             CCEEEeCCEEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcccCCCCCCccCCCEEEeCCHHHHHHHHHHhhhcCC
Confidence            9999886 7999998888888775  244  6999999999999999999998753   111111111111110001157


Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--h---HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      ++++|||+|.+|+|+|..|.+.|.+|+++++.+.+..  .   .....+.+++.||+++.++.+.+++.++.   +..+.
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~---v~~v~  263 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDHIGTIYDGDMAEYIYKEADKHHIEILTNENVKAFKGNER---VEAVE  263 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGGTTSSSCHHHHHHHHHHHHHTTCEEECSCCEEEEEESSB---EEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCchhhcCCHHHHHHHHHHHHHcCcEEEcCCEEEEEEcCCc---EEEEE
Confidence            9999999999999999999999999999998876532  1   12224567778999999999999987642   22232


Q ss_pred             EEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccCCCceeeCCCCCcCCCCceEEecccCCch---------hhHH
Q 016820          281 VKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---------YRQA  350 (382)
Q Consensus       281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---------~~~~  350 (382)
                      +     ++ .++++|.|++|+|++|++.++. .++.++++|++.||+ +++|+.|+|||+|||+...         +..+
T Consensus       264 ~-----~~-~~i~~D~vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~-~~~ts~p~IyA~GD~~~~~~~~~g~~~~~~~~  336 (480)
T 3cgb_A          264 T-----DK-GTYKADLVLVSVGVKPNTDFLEGTNIRTNHKGAIEVNA-YMQTNVQDVYAAGDCATHYHVIKEIHDHIPIG  336 (480)
T ss_dssp             E-----TT-EEEECSEEEECSCEEESCGGGTTSCCCBCTTSCBCCCT-TSBCSSTTEEECGGGBCEEBTTTCSEECCCCH
T ss_pred             E-----CC-CEEEcCEEEECcCCCcChHHHHhCCcccCCCCCEEECC-CccCCCCCEEEeeeEEEecCCCCCcceecchH
Confidence            2     22 4799999999999999988776 467788899999998 7889999999999998532         2468


Q ss_pred             HHHHhhHHHHHHHHHH
Q 016820          351 VTAAGTGCMAALEAEH  366 (382)
Q Consensus       351 ~~a~~~g~~aa~~i~~  366 (382)
                      ..|..||+.+|.+|..
T Consensus       337 ~~A~~qg~~aa~~i~g  352 (480)
T 3cgb_A          337 TTANKQGRLAGLNMLD  352 (480)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcC
Confidence            9999999999999973

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=100.00  E-value=4.1e-35  Score=278.03  Aligned_cols=298  Identities=17%  Similarity=0.119  Sum_probs=202.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ++|||||||+||+++|.+|++++  .+|+|||+.......+.......          .....+++...+. .+.+.|++
T Consensus         3 KkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~----------g~~~~~~~~~~~~-~~~~~gv~   71 (401)
T 3vrd_B            3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIG----------GDRELASLRVGYD-GLRAHGIQ   71 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHH----------TSSCGGGGEECSH-HHHHTTCE
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhc----------CCCCHHHHhhCHH-HHHHCCCE
Confidence            68999999999999999999886  68999996321111111110000          0011112211122 23457999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCC-Cccee------eeccCCCCCCCCCcEE
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNR-GISAC------AVCDGAAPIFRDKPLA  209 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~-~~~~~------~~~~~~~~~~~~~~v~  209 (382)
                      ++.++|+.||++++.+.+. ++.++.||+||+|+|++++.+.+||.++.... ..+..      ...............+
T Consensus        72 ~i~~~v~~id~~~~~v~~~-~g~~i~yd~LviAtG~~~~~~~i~G~~e~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  150 (401)
T 3vrd_B           72 VVHDSALGIDPDKKLVKTA-GGAEFAYDRCVVAPGIDLLYDKIEGYSEALAAKLPHAWKAGEQTALLRRQLESMDDGGVV  150 (401)
T ss_dssp             EECSCEEEEETTTTEEEET-TSCEEECSEEEECCCEEECGGGSBTCCSGGGGTSCCCSSCSHHHHHHHHHHHHSCTTCEE
T ss_pred             EEEeEEEEEEccCcEEEec-ccceeecceeeeccCCccccCCccCchhhcccCccceeccHHHHHHHHHHHHhcccCCcE
Confidence            9999999999988755442 55679999999999999999999998763221 11111      1111100011223344


Q ss_pred             EEcCCc-----------hHHHHHHHHhhcC--CEEEEEEeCCCCcch----H---HHHHHhccCCCcEEEcCceeEEEEe
Q 016820          210 VIGGGD-----------SAMEEANFLTKYG--SKVYIIHRRDSFRAS----K---IMQNRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       210 VvG~G~-----------~a~e~a~~l~~~g--~~v~~~~~~~~~~~~----~---~~~~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      |++.+.           .+++++.++.+.+  .+|+++++.+.+...    .   ....+.+++.||+++.+.++..++.
T Consensus       151 v~~~~~~~i~~~~a~~e~~~~~a~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~v~~v~~  230 (401)
T 3vrd_B          151 IIAPPAPPFRCPPGPYERASQIAHYLKAHKSKSKVIILDNSQTFSKQAQFTKGWERLYGFGTENALIEWHPGPDAAVVKT  230 (401)
T ss_dssp             EEECCSSSCBCTTHHHHHHHHHHHHHHHHCTTCEEEEECSSSSCTTHHHHHHHHHHHSCTTSTTCSEEEECTTTTCEEEE
T ss_pred             EEecCCccEEeehHHHHHHHHHHHHHHhcCCCCEEEEEcccccccccccccHHHHHHHHHHHHhcCcEEEeCceEEEEEe
Confidence            443332           3456666666654  689999988876322    1   1123346778999999999999988


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCC-cCCCCceEEecccCCc--h
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTT-HTSVPGVFAAGDVQDK--K  346 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~-~t~~~~vya~GD~~~~--~  346 (382)
                      +.++     ..+..   ++++++++|.+++++|.+|+..+...++ .+++|||.||++++ .+++|||||+|||+..  .
T Consensus       231 ~~~~-----~~v~~---~~g~~i~~D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDva~~~~~  301 (401)
T 3vrd_B          231 DTEA-----MTVET---SFGETFKAAVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDACNAAPM  301 (401)
T ss_dssp             ETTT-----TEEEE---TTSCEEECSEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGGBCCTTS
T ss_pred             cccc-----eEEEc---CCCcEEEeeEEEEecCcCCchhHhhccc-cccCCCEEECCCcceecCCCCEEEecccccCCCC
Confidence            7764     23333   3346799999999999999855444566 57899999999754 5899999999999853  3


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHccCcccc
Q 016820          347 YRQAVTAAGTGCMAALEAEHYLQEIGSQEDK  377 (382)
Q Consensus       347 ~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~  377 (382)
                      +++++.|..||+.+|+||...|.++++.+..
T Consensus       302 pk~a~~A~~qa~v~A~ni~~~l~G~~~~~~~  332 (401)
T 3vrd_B          302 PKSAYSANSQAKVAAAAVVALLKGEEPGTPS  332 (401)
T ss_dssp             CBSHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             CchHHHHHHHHHHHHHHHHHHhcCCCCCCcc
Confidence            7899999999999999999999998765543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=100.00  E-value=3e-35  Score=281.03  Aligned_cols=296  Identities=15%  Similarity=0.116  Sum_probs=200.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ++|||||||+||+++|..|++++  ++|+|||++......++......          .....+++...+++.+++.|++
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~----------g~~~~~~i~~~~~~~~~~~gv~   72 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAM----------GWRKFEDISVPLAPLLPKFNIE   72 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHH----------TCSCGGGSEEESTTTGGGGTEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhc----------CCCCHHHhhhcHHHHHHHCCcE
Confidence            57999999999999999999875  88999995311100000000000          0112233333344556678999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeeeccCC-CCCCCCCcEEEEcC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAVCDGA-APIFRDKPLAVIGG  213 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~~~~~-~~~~~~~~v~VvG~  213 (382)
                      ++.++|+.||++++.+++. ++.++.||+||+|||+++. +++||.++.  ...++.+.....+. ......+.++|+|+
T Consensus        73 ~i~~~v~~Id~~~~~V~~~-~g~~i~YD~LViAtG~~~~-~~i~G~~e~~~~~~~~~~a~~~~~~l~~~~~~~~~vv~gg  150 (430)
T 3hyw_A           73 FINEKAESIDPDANTVTTQ-SGKKIEYDYLVIATGPKLV-FGAEGQEENSTSICTAEHALETQKKLQELYANPGPVVIGA  150 (430)
T ss_dssp             EECSCEEEEETTTTEEEET-TCCEEECSEEEECCCCEEE-CCSBTHHHHSCCCSSHHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             EEEeEEEEEECCCCEEEEC-CCCEEECCEEEEeCCCCcc-CCccCcccCcCCcccHHHHHHHHHHHHhhccCCceEEEeC
Confidence            9999999999998865543 4567999999999999865 468886541  11222222111110 00112344566655


Q ss_pred             Cc------hHHHHH----HHHhhcC----CEEEEEEeCCCCc--------chHHHHHHhccCCCcEEEcCceeEEEEecC
Q 016820          214 GD------SAMEEA----NFLTKYG----SKVYIIHRRDSFR--------ASKIMQNRALTNPKIDVIWNSVVLEAYGEG  271 (382)
Q Consensus       214 G~------~a~e~a----~~l~~~g----~~v~~~~~~~~~~--------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~  271 (382)
                      +.      .+.|++    ..+.+.+    .+|+++...+.+.        ......++.+++.||++++++.+++++++.
T Consensus       151 ~~gve~~~~~~e~a~~~~~~l~~~g~~~~v~v~~~~~~~~l~~~~~~~~~~~~~~l~~~l~~~GV~~~~~~~v~~v~~~~  230 (430)
T 3hyw_A          151 IPGVSCFGPAYEFALMLHYELKKRGIRYKVPMTFITSEPYLGHFGVGGIGASKRLVEDLFAERNIDWIANVAVKAIEPDK  230 (430)
T ss_dssp             CTTCCCCHHHHHHHHHHHHHHHHTTCGGGCCEEEECSSSSTTCTTTTCSTTHHHHHHHHHHHTTCEEECSCEEEEECSSE
T ss_pred             CCcEEEhHHHHHHHHHHHHHHHHhcccccceeeeecccchhhhccchhhHHHHHHHHHHHHhCCeEEEeCceEEEEeCCc
Confidence            42      233443    3444444    4788888766542        223445677888999999999999997654


Q ss_pred             CceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhccc--ccccCCCceeeCCCCCcCCCCceEEecccCCc----
Q 016820          272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ--LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK----  345 (382)
Q Consensus       272 ~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~--~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~----  345 (382)
                             +.+++ .++++.++++|.++|++|.+|+..+...+  +..+.+|++.||+.++.+++|||||+|||+..    
T Consensus       231 -------~~~~~-~~g~~~~i~~d~vi~~~G~~~~~~~~~~~~~l~~~~~g~i~vd~~lq~t~~~~IfAiGD~a~~p~~~  302 (430)
T 3hyw_A          231 -------VIYED-LNGNTHEVPAKFTMFMPSFQGPEVVASAGDKVANPANKMVIVNRCFQNPTYKNIFGVGVVTAIPPIE  302 (430)
T ss_dssp             -------EEEEC-TTSCEEEEECSEEEEECEEECCHHHHTTCTTTBCTTTCCBCCCTTSBCSSSTTEEECSTTBCCCCSS
T ss_pred             -------eEEEe-eCCCceEeecceEEEeccCCCchHHHhcccccccCCceEEEecccccCCCCCCEEEeccEEecCCcc
Confidence                   66665 23556789999999999999986555444  33455678889985455899999999999853    


Q ss_pred             -------hhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          346 -------KYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       346 -------~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                             .|++++.|.+||+.+|+||...+.++++.
T Consensus       303 ~~~~~~~~pk~a~~A~~qg~~~A~Ni~~~l~g~~~~  338 (430)
T 3hyw_A          303 KTPIPTGVPKTGMMIEQMAMAVAHNIVNDIRNNPDK  338 (430)
T ss_dssp             CCSSCCCCCCCHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred             cCcCcCccchHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence                   26789999999999999999999987654

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=100.00  E-value=2.2e-33  Score=266.78  Aligned_cols=296  Identities=18%  Similarity=0.094  Sum_probs=206.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHH---cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAAR---AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~---~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ++|+|||||++|+++|..|++   .|++|+|||+..    ..+    ........  ........++...+.+.+++.++
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~----~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~gv   71 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSR----FSY----FRPALPHV--AIGVRDVDELKVDLSEALPEKGI   71 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSS----EEE----ECCSSCCC--CSSCCCCCCEEEEHHHHTGGGTC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCC----Cce----eccchhhc--ccCCcCHHHHHHHHHHHHhhCCe
Confidence            589999999999999999999   899999999532    111    11111111  01122334455566777788899


Q ss_pred             EEEEeeEEEEEecCCcEEEEECC---eEEEcCEEEEccCCCCcCCCCCCCccc--cCCCcceeeeccCCCCCCCCCcEEE
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDS---KSVLADTVIVATGAVAKKLQFPGSDAF--WNRGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~---~~~~~d~lvlA~G~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      +++.++|+.++.+++.+.+....   .++.||+||+|+|.+|+.+.+||.+..  ............+.. ....++++|
T Consensus        72 ~~~~~~v~~i~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~~~~~ipG~~~~~~~~~~~~~~~~~~~~l-~~~~~~~vV  150 (409)
T 3h8l_A           72 QFQEGTVEKIDAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHLATELVKGWDKYGYSVCEPEFATKLREKL-ESFQGGNIA  150 (409)
T ss_dssp             EEEECEEEEEETTTTEEEEECTTSCEEEEECSEEEECCCCEECGGGSBTHHHHCEESSSTTHHHHHHHHH-HHCCSEEEE
T ss_pred             EEEEeeEEEEeCCCCEEEEccCCcccceeeCCEEEECCCCCcCccCCCChhhcCcCcCCHHHHHHHHHHH-HHhcCCeEE
Confidence            99999999999888776665432   238999999999999998889987641  111111111111100 001256779


Q ss_pred             EcCCc-------------------------hHHHHH----HHHhhcC----CEEEEEEeCCCCcc----hHHHHHHhccC
Q 016820          211 IGGGD-------------------------SAMEEA----NFLTKYG----SKVYIIHRRDSFRA----SKIMQNRALTN  253 (382)
Q Consensus       211 vG~G~-------------------------~a~e~a----~~l~~~g----~~v~~~~~~~~~~~----~~~~~~~~l~~  253 (382)
                      ||+|.                         .++|++    ..+.+.|    .+|+++++.+.+..    ......+.+++
T Consensus       151 iG~G~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~~~l~~~g~~~~~~v~~~~~~~~l~~~~~~~~~~~~~~l~~  230 (409)
T 3h8l_A          151 IGSGPFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLHGYFKKKGMLDKVHVTVFSPGEYLSDLSPNSRKAVASIYNQ  230 (409)
T ss_dssp             EEECCBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHHHHHHTTTCTTTEEEEEECSSSSSTTBCHHHHHHHHHHHHH
T ss_pred             EEecccccCCCccccccccccCCCCcccCCHHHHHHHHHHHHHHHcCCCCCeEEEEEeCCccccccCHHHHHHHHHHHHH
Confidence            99991                         356666    4556677    48999998873321    12223466778


Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhccccc-ccCCCceeeCCCCCcC-
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLD-LHSDGYIITKPGTTHT-  331 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~-~~~~g~i~vd~~~~~t-  331 (382)
                      .||+++++++|++++.+.       +.+++   +  .++++|.+++++|++|+..+...+.. .+++|++.||+ ++++ 
T Consensus       231 ~gV~~~~~~~v~~i~~~~-------v~~~~---g--~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~-~~~~~  297 (409)
T 3h8l_A          231 LGIKLVHNFKIKEIREHE-------IVDEK---G--NTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDL-NMVSI  297 (409)
T ss_dssp             HTCEEECSCCEEEECSSE-------EEETT---S--CEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBT-TSBBS
T ss_pred             CCCEEEcCCceEEECCCe-------EEECC---C--CEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCc-ccccC
Confidence            899999999999997653       65543   3  57999999999999998644444223 46789999999 5666 


Q ss_pred             CCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHcc-Cccccc
Q 016820          332 SVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEIG-SQEDKS  378 (382)
Q Consensus       332 ~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~~-~~~~~~  378 (382)
                      ++||||++|||+.. .++.+..|..||+.+|.+|...+.+.. ..++.+
T Consensus       298 ~~~~vfa~GD~~~~~~~~~~~~A~~q~~~aa~~i~~~l~~~~~~~~~~~  346 (409)
T 3h8l_A          298 KYDNVYAVGDANSMTVPKLGYLAVMTGRIAAQHLANRLGVPTKVDKYYP  346 (409)
T ss_dssp             SCTTEEECGGGBTTCCSCCHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred             CCCCEEEeehhccCCCCcHHHHHHHHHHHHHHHHHHHhcCCCCccccCC
Confidence            89999999999963 478899999999999999999994333 244444

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=100.00  E-value=4.1e-32  Score=260.82  Aligned_cols=281  Identities=17%  Similarity=0.156  Sum_probs=204.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCc---------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDV---------------------------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~---------------------------  107 (382)
                      ..+||+|||||++|+++|..|++.|.  +|+|||+    ...+||.|......                           
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~----~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~   80 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFER----RGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVY   80 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECS----SSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEec----CCCCCCeecCCCCCCcccccccccccccccccccccccCCc
Confidence            45899999999999999999999999  9999995    33445554432110                           


Q ss_pred             ----------------ccCCCC------CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC----Ce-
Q 016820          108 ----------------ENFPGF------PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD----SK-  159 (382)
Q Consensus       108 ----------------~~~~~~------~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~----~~-  159 (382)
                                      ..++.+      +......++.+++++++++++..++.+ +|+.++.+++.|.+.+.    +. 
T Consensus        81 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~  160 (447)
T 2gv8_A           81 PSPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSP  160 (447)
T ss_dssp             CCCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCC
T ss_pred             cCchhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCe
Confidence                            001111      122346788999999998888777777 79999988877777653    34 


Q ss_pred             --EEEcCEEEEccCC--CCcCCCCCCCccc----cCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCE-
Q 016820          160 --SVLADTVIVATGA--VAKKLQFPGSDAF----WNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK-  230 (382)
Q Consensus       160 --~~~~d~lvlA~G~--~~~~~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-  230 (382)
                        ++.||+||+|+|.  .|+.|.+||.+.+    .....+...+.+..  ...+++|+|||+|.+|+|+|..|.+.+.+ 
T Consensus       161 ~~~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~~~--~~~~k~VvVvG~G~sg~e~A~~l~~~~~~~  238 (447)
T 2gv8_A          161 ISKDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFREPE--LFVGESVLVVGGASSANDLVRHLTPVAKHP  238 (447)
T ss_dssp             EEEEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCCGG--GGTTCCEEEECSSHHHHHHHHHHTTTSCSS
T ss_pred             eEEEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCChh--hcCCCEEEEEccCcCHHHHHHHHHHHhCCc
Confidence              6999999999999  7888899997653    22334444444333  44689999999999999999999999999 


Q ss_pred             EEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh-
Q 016820          231 VYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF-  309 (382)
Q Consensus       231 v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~-  309 (382)
                      |+++.|.+.+          +...||.+  +..|.++..++.     .|++.+   + ...+++|.||+|||++|++++ 
T Consensus       239 V~l~~r~~~~----------l~~~~i~~--~~~v~~~~~~~~-----~v~~~d---G-~~~~~~D~vi~atG~~~~~~~l  297 (447)
T 2gv8_A          239 IYQSLLGGGD----------IQNESLQQ--VPEITKFDPTTR-----EIYLKG---G-KVLSNIDRVIYCTGYLYSVPFP  297 (447)
T ss_dssp             EEEECTTCCS----------CBCSSEEE--ECCEEEEETTTT-----EEEETT---T-EEECCCSEEEECCCBCCCCCCH
T ss_pred             EEEEeCCCCc----------CCCCCeEE--ecCeEEEecCCC-----EEEECC---C-CEeccCCEEEECCCCCcCCCCC
Confidence            9999998765          55668875  577888875443     266653   4 234799999999999999988 


Q ss_pred             ----hcc-cccccCCCceeeCC--CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          310 ----VDG-QLDLHSDGYIITKP--GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       310 ----~~~-~~~~~~~g~i~vd~--~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                          +.. +..+..++.+.++.  +.+.+++|+||++||+...  ..+..|..||+.+|.++..
T Consensus       298 ~~~~l~~~~~~i~~~~~~~~~~~~~v~~~~~p~l~~~G~~~~~--~~~~~a~~qa~~~a~~~~g  359 (447)
T 2gv8_A          298 SLAKLKSPETKLIDDGSHVHNVYQHIFYIPDPTLAFVGLALHV--VPFPTSQAQAAFLARVWSG  359 (447)
T ss_dssp             HHHSCCSTTTCCCSSSSSCCSEETTTEETTCTTEEESSCCBSS--CHHHHHHHHHHHHHHHHTT
T ss_pred             cccccccccCceecCCCcccccccccccCCCCcEEEEeccccc--cCchHHHHHHHHHHHHHcC
Confidence                652 11222234444443  1223789999999999864  3678899999999988863

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=100.00  E-value=7.7e-33  Score=265.39  Aligned_cols=286  Identities=19%  Similarity=0.197  Sum_probs=208.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHH-c------CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR-A------ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS  130 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~-~------g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (382)
                      ++||+|||||++|+++|..|++ .      |++|+|||+    ...++|.+...       ..|......++..++.+.+
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~----~~~~gg~~~~g-------v~p~~~~~~~~~~~~~~~~   71 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEM----LPTPWGLVRSG-------VAPDHPKIKSISKQFEKTA   71 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEES----SSSCSTHHHHT-------SCTTCTGGGGGHHHHHHHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEec----CCCCCCccccc-------cCCCCCCHHHHHHHHHHHH
Confidence            5799999999999999999999 7      999999994    34466666421       1233445667888888888


Q ss_pred             HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC-CcCCCCCCCccccCCCcceeee----------c-cC
Q 016820          131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV-AKKLQFPGSDAFWNRGISACAV----------C-DG  198 (382)
Q Consensus       131 ~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~-~~~~~~~g~~~~~~~~~~~~~~----------~-~~  198 (382)
                      ++.+++++.+.  .+   ++.+.+  ++..+.||+||+|||+. |+.+++||.+.   ..++.+..          + ..
T Consensus        72 ~~~~v~~~~~v--~v---~~~v~~--~~~~~~~d~lViAtG~~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~  141 (456)
T 1lqt_A           72 EDPRFRFFGNV--VV---GEHVQP--GELSERYDAVIYAVGAQSDRMLNIPGEDL---PGSIAAVDFVGWYNAHPHFEQV  141 (456)
T ss_dssp             TSTTEEEEESC--CB---TTTBCH--HHHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTC
T ss_pred             hcCCCEEEeeE--EE---CCEEEE--CCCeEeCCEEEEeeCCCCCCCCCCCCCCC---CCcEEHHHHHhhhhcCcccccc
Confidence            88999998772  12   223332  23357899999999997 78888998762   11111110          0 11


Q ss_pred             CCCCCCCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCcch--------------
Q 016820          199 AAPIFRDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFRAS--------------  243 (382)
Q Consensus       199 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~~~--------------  243 (382)
                      . ....+++++|||+|++|+|+|..|.+.                    + .+|+++.|++.+...              
T Consensus       142 ~-~~~~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~  220 (456)
T 1lqt_A          142 S-PDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDG  220 (456)
T ss_dssp             C-CCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTT
T ss_pred             h-hhcCCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCC
Confidence            1 123579999999999999999999874                    4 599999998754210              


Q ss_pred             ----------------------------HHHHHHhccC------CCcEEEcCceeEEEEecCCceeeeeEEEEec-----
Q 016820          244 ----------------------------KIMQNRALTN------PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL-----  284 (382)
Q Consensus       244 ----------------------------~~~~~~~l~~------~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~-----  284 (382)
                                                  ..++.+.+.+      .||+++++..+.++..++.   +.++++...     
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~---v~~v~~~~~~~~~~  297 (456)
T 1lqt_A          221 VDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRK---VERIVLGRNELVSD  297 (456)
T ss_dssp             EEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSS---CCEEEEEEEEEEEC
T ss_pred             ceeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCc---EeEEEEEEEEecCC
Confidence                                        0112233444      7899999999999987632   444665421     


Q ss_pred             --------cCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhh
Q 016820          285 --------VTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGT  356 (382)
Q Consensus       285 --------~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~  356 (382)
                              .+++..+++||.|++++|++|++ + . ++.++++|++.+|+..+.++.|+|||+|||...+...+..|+.+
T Consensus       298 ~~~~~~~~~~g~~~~i~~d~vi~a~G~~p~~-l-~-gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~  374 (456)
T 1lqt_A          298 GSGRVAAKDTGEREELPAQLVVRSVGYRGVP-T-P-GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKD  374 (456)
T ss_dssp             SSSSEEEEEEEEEEEEECSEEEECSCEECCC-C-T-TSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHH
T ss_pred             CcccccccCCCceEEEEcCEEEEccccccCC-C-C-CCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHH
Confidence                    12333579999999999999988 2 3 77888899999998544489999999999985443456689999


Q ss_pred             HHHHHHHHHHHHHHc
Q 016820          357 GCMAALEAEHYLQEI  371 (382)
Q Consensus       357 g~~aa~~i~~~l~~~  371 (382)
                      |..+|.+|..++.+.
T Consensus       375 g~~~a~~i~~~l~~~  389 (456)
T 1lqt_A          375 AQDTVDTLIKNLGNA  389 (456)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999999864

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=100.00  E-value=7.4e-33  Score=265.79  Aligned_cols=291  Identities=17%  Similarity=0.234  Sum_probs=208.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      .+++|+|||||++|+++|..|++.|  ++|+|||+    ...++|.+...       ..|......++..++.+.+++.+
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~----~~~~gg~~~~g-------~~p~~~~~~~~~~~~~~~~~~~g   73 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEK----QLVPFGLVRFG-------VAPDHPEVKNVINTFTQTARSDR   73 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECS----SSSSCTHHHHT-------SCTTCGGGGGHHHHHHHHHTSTT
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeC----CCcCCceeecc-------cCCCCccHHHHHHHHHHHHHhCC
Confidence            3579999999999999999999998  99999994    44456655321       11222344677888888888899


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC-cCCCCCCCccccCCCcceeee----------ccCCCCCC
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA-KKLQFPGSDAFWNRGISACAV----------CDGAAPIF  203 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~-~~~~~~g~~~~~~~~~~~~~~----------~~~~~~~~  203 (382)
                      ++++.+...     .+.+.+  ++..+.||+||+|||+.| +.|++||.+.   ..++.+..          ........
T Consensus        74 v~~~~~~~v-----~~~V~~--~~~~~~~d~lVlAtGs~~~~~~~ipG~~~---~gv~~~~~~~~~~~~~~d~~~~~~~~  143 (460)
T 1cjc_A           74 CAFYGNVEV-----GRDVTV--QELQDAYHAVVLSYGAEDHQALDIPGEEL---PGVFSARAFVGWYNGLPENRELAPDL  143 (460)
T ss_dssp             EEEEBSCCB-----TTTBCH--HHHHHHSSEEEECCCCCEECCCCCTTTTS---TTEEEHHHHHHHHTTCGGGTTCCCCT
T ss_pred             cEEEeeeEE-----eeEEEe--ccceEEcCEEEEecCcCCCCCCCCCCCCC---CcEEEHHHHHHHhhcCccccccccCC
Confidence            999887421     122222  223478999999999995 7788999753   12222211          11111022


Q ss_pred             CCCcEEEEcCCchHHHHHHHHh--------------------hcCC-EEEEEEeCCCCcc--------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLT--------------------KYGS-KVYIIHRRDSFRA--------------------  242 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~--------------------~~g~-~v~~~~~~~~~~~--------------------  242 (382)
                      .+++++|||+|++|+|+|..|.                    +.+. +|+++.|++.+..                    
T Consensus       144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~  223 (460)
T 1cjc_A          144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPML  223 (460)
T ss_dssp             TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEe
Confidence            5799999999999999999998                    5565 7999998875410                    


Q ss_pred             ---------------------hHHHHHHhccC--------------CCcEEEcCceeEEEEecCCceeeeeEEEEecc--
Q 016820          243 ---------------------SKIMQNRALTN--------------PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLV--  285 (382)
Q Consensus       243 ---------------------~~~~~~~~l~~--------------~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~--  285 (382)
                                           ...++.+.+.+              .||+++++..+.+|..++++..+.++++....  
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~  303 (460)
T 1cjc_A          224 DPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLE  303 (460)
T ss_dssp             CGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEE
T ss_pred             chhhhcchhhhhhhccHHHHHHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEc
Confidence                                 00111122333              78999999999999876422014456654211  


Q ss_pred             ----------CCceEEEecCeEEEeeCCCCChhhhcccc-cccCCCceeeCCCCCcCC-CCceEEecccCCchhhHHHHH
Q 016820          286 ----------TGQVSDLKVSGLFFAIGHEPATKFVDGQL-DLHSDGYIITKPGTTHTS-VPGVFAAGDVQDKKYRQAVTA  353 (382)
Q Consensus       286 ----------~~~~~~~~~D~vi~~~G~~p~~~~~~~~~-~~~~~g~i~vd~~~~~t~-~~~vya~GD~~~~~~~~~~~a  353 (382)
                                +++...+++|.|++++|++|++ +  .++ .++++|++.+|+ .++|+ .|+|||+|||+..+...+..|
T Consensus       304 ~~~~~~~~~~~g~~~~i~~d~Vi~a~G~~p~~-l--~gl~~~d~~g~i~vn~-~~rt~~~p~vya~Gd~~~g~~~~i~~a  379 (460)
T 1cjc_A          304 GIGEATRAVPTGDVEDLPCGLVLSSIGYKSRP-I--DPSVPFDPKLGVVPNM-EGRVVDVPGLYCSGWVKRGPTGVITTT  379 (460)
T ss_dssp             SSGGGCEEEEEEEEEEEECSEEEECCCEECCC-C--CTTSCCBTTTTBCCEE-TTEETTCTTEEECTHHHHCTTCCHHHH
T ss_pred             cccCCCcccCCCceEEEEcCEEEECCCCCCCC-C--CCCcccccCCCeeECC-CCcCcCCCCEEEEEeCCcCCCccHHHH
Confidence                      2344689999999999999998 3  477 888889999998 67787 799999999985444457799


Q ss_pred             HhhHHHHHHHHHHHHHHcc
Q 016820          354 AGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       354 ~~~g~~aa~~i~~~l~~~~  372 (382)
                      +.+|+.+|.+|..++.+..
T Consensus       380 ~~~g~~aa~~i~~~l~~~~  398 (460)
T 1cjc_A          380 MTDSFLTGQILLQDLKAGH  398 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHhCc
Confidence            9999999999999998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=99.98  E-value=5e-32  Score=282.92  Aligned_cols=290  Identities=20%  Similarity=0.258  Sum_probs=209.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+||+|||||+||+++|..|+++|+ +|+|||    +....||.+..     ..|.+   ....++.++..+.+++.|+
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E----~~~~~GG~~~~-----~ip~~---~~~~~~~~~~~~~~~~~gv  253 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLARLGYSDITIFE----KQEYVGGLSTS-----EIPQF---RLPYDVVNFEIELMKDLGV  253 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEE----SSSSCSTHHHH-----TSCTT---TSCHHHHHHHHHHHHTTTC
T ss_pred             CCCEEEEECccHHHHHHHHHHHhcCCCcEEEEe----CCCCCCccccc-----cCCcc---cCCHHHHHHHHHHHHHCCc
Confidence            46899999999999999999999999 799999    44567777543     12222   2235667777788888999


Q ss_pred             EEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCC-CCcCCCC-CCCccccCCCccee-e--------------eccC
Q 016820          136 QIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA-VAKKLQF-PGSDAFWNRGISAC-A--------------VCDG  198 (382)
Q Consensus       136 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~-~~~~~~~-~g~~~~~~~~~~~~-~--------------~~~~  198 (382)
                      +++.++....    +.+++. +...+.||+||+|||+ .|+.+++ +|.+..  ..++.. .              ..+.
T Consensus       254 ~~~~~~~v~~----~~v~~~-~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~--~gv~~a~~~L~~~~~~~~~~~~~~~~  326 (1025)
T 1gte_A          254 KIICGKSLSE----NEITLN-TLKEEGYKAAFIGIGLPEPKTDDIFQGLTQD--QGFYTSKDFLPLVAKSSKAGMCACHS  326 (1025)
T ss_dssp             EEEESCCBST----TSBCHH-HHHHTTCCEEEECCCCCEECCCGGGTTCCTT--TTEEEHHHHHHHHHHHHCBTTBSCCC
T ss_pred             EEEcccEecc----ceEEhh-hcCccCCCEEEEecCCCCCCCCCCCCCCCCC--CCEEEhHHHHHHHHhhcccccccccc
Confidence            9998854321    222221 1234789999999999 5876654 354311  111110 0              0111


Q ss_pred             CCCCCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCC-C-cchHHHHHHhccCCCcEEEcCceeEEEEecCCcee
Q 016820          199 AAPIFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDS-F-RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKV  275 (382)
Q Consensus       199 ~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~-~-~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~  275 (382)
                      .. ...+++|+|||+|.+|+|+|..+.++|. +||++++.+. . +...... +.++++||+++.+..+.++..+++  .
T Consensus       327 ~~-~~~~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~~~~~~~~~e~-~~~~~~Gv~~~~~~~~~~i~~~~g--~  402 (1025)
T 1gte_A          327 PL-PSIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-ELAKEEKCEFLPFLSPRKVIVKGG--R  402 (1025)
T ss_dssp             CC-CCCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-HHHHHTTCEEECSEEEEEEEEETT--E
T ss_pred             cc-cccCCcEEEECCChHHHHHHHHHHHcCCCEEEEEEecChhhCCCCHHHH-HHHHHcCCEEEeCCCceEEEccCC--e
Confidence            11 2236799999999999999999999996 8999999873 2 2223332 346678999999999999987533  2


Q ss_pred             eeeEEEEecc----------CCceEEEecCeEEEeeCCCCC-hhhhc--ccccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820          276 LGGLKVKNLV----------TGQVSDLKVSGLFFAIGHEPA-TKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV  342 (382)
Q Consensus       276 ~~~v~~~~~~----------~~~~~~~~~D~vi~~~G~~p~-~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~  342 (382)
                      +.++++....          ++++.++++|.|++++|++|+ ..++.  .++.++++|++.||+.+++|+.|+|||+|||
T Consensus       403 v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~~~~~Ts~~~VfA~GD~  482 (1025)
T 1gte_A          403 IVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDI  482 (1025)
T ss_dssp             EEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGG
T ss_pred             EEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCCchhhhhcccCceECCCCCEEECCCCCccCCCCEEEeCCC
Confidence            5555554210          123357999999999999864 55554  3688888999999986789999999999999


Q ss_pred             CCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          343 QDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       343 ~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +.. +.++..|+.+|+.||.+|..+|..
T Consensus       483 ~~~-~~~~~~A~~~G~~aA~~i~~~L~~  509 (1025)
T 1gte_A          483 VGM-ANTTVESVNDGKQASWYIHKYIQA  509 (1025)
T ss_dssp             GCS-CCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-chHHHHHHHHHHHHHHHHHHHHHh
Confidence            974 578899999999999999999984

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=99.98  E-value=9.5e-33  Score=267.89  Aligned_cols=297  Identities=18%  Similarity=0.177  Sum_probs=196.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCC---CCCcceecCCCc-----ccCCCCCCC-----CChHH
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDI---APGGQLTTTSDV-----ENFPGFPQG-----ILGGD  121 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~---~~gg~~~~~~~~-----~~~~~~~~~-----~~~~~  121 (382)
                      ..+||||||||+||+++|..|++.  |.+|+|||+......   .++..+......     ..++.++..     ....+
T Consensus        10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (493)
T 1m6i_A           10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS   89 (493)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred             CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence            458999999999999999999888  899999996421110   001111000000     000000000     00000


Q ss_pred             HHHHHHH--HHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc-------ccCCCcc
Q 016820          122 LMDRCRN--QSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA-------FWNRGIS  191 (382)
Q Consensus       122 ~~~~~~~--~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~-------~~~~~~~  191 (382)
                      +......  ...+.+++++.+ +|..|+.+++.+.+. ++.++.||+||+|||++|+.+++++...       +..+...
T Consensus        90 ~~~~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~-~g~~i~yd~lviATGs~p~~~~~~~~~~~~~~~~v~~~~~~~  168 (493)
T 1m6i_A           90 FYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN-DGSQITYEKCLIATGGTPRSLSAIDRAGAEVKSRTTLFRKIG  168 (493)
T ss_dssp             GSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET-TSCEEEEEEEEECCCEEECCCHHHHTSCHHHHHTEEECCSHH
T ss_pred             hhcchhhhhhhhcCCeEEEcCCEEEEEECCCCEEEEC-CCCEEECCEEEECCCCCCCCCCCcccccccccCceEEEcCHH
Confidence            0000000  013568999998 799999877655442 4567999999999999998776654211       1111111


Q ss_pred             eeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhh----cCCEEEEEEeCCCCc----c--hHHHHHHhccCCCcEEEcC
Q 016820          192 ACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK----YGSKVYIIHRRDSFR----A--SKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       192 ~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~----~g~~v~~~~~~~~~~----~--~~~~~~~~l~~~gv~~~~~  261 (382)
                      ++..+...  ...+++++|||+|.+|+|+|..|.+    .|.+|+++.+.+.+.    .  ......+.+++.||+++++
T Consensus       169 d~~~l~~~--~~~~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~~~l~~~~~~~~~~~l~~~GV~v~~~  246 (493)
T 1m6i_A          169 DFRSLEKI--SREVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPN  246 (493)
T ss_dssp             HHHHHHHH--HHHCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECS
T ss_pred             HHHHHHHH--hhcCCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCcccccccCCHHHHHHHHHHHHhcCCEEEeC
Confidence            11111111  2247899999999999999999876    478999998875431    1  1222346678899999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccccC-CCceeeCCCCCcCCCCceEEe
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDLHS-DGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~~~-~g~i~vd~~~~~t~~~~vya~  339 (382)
                      +.+.+++.+++.   ..+++.     ++.++++|.|++++|.+|++.++. .++.+++ +|++.||+ +++| .|+|||+
T Consensus       247 ~~V~~i~~~~~~---~~v~l~-----dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~-~l~t-~~~IyA~  316 (493)
T 1m6i_A          247 AIVQSVGVSSGK---LLIKLK-----DGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNA-ELQA-RSNIWVA  316 (493)
T ss_dssp             CCEEEEEEETTE---EEEEET-----TSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCT-TCEE-ETTEEEC
T ss_pred             CEEEEEEecCCe---EEEEEC-----CCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECC-Cccc-CCCeeEe
Confidence            999999876542   123332     235799999999999999998775 4677775 68999998 5677 6999999


Q ss_pred             cccCCch--------hhHHHHHHhhHHHHHHHHHH
Q 016820          340 GDVQDKK--------YRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       340 GD~~~~~--------~~~~~~a~~~g~~aa~~i~~  366 (382)
                      |||+..+        ...+..|+.||+.+|.||..
T Consensus       317 GD~a~~~~~~~g~~~~~~~~~A~~qg~~aa~ni~g  351 (493)
T 1m6i_A          317 GDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMTG  351 (493)
T ss_dssp             GGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHTS
T ss_pred             eeeEeccCcccCccccchHHHHHHHHHHHHHHhcC
Confidence            9998632        12466899999999999973

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=99.97  E-value=4.4e-31  Score=274.05  Aligned_cols=287  Identities=22%  Similarity=0.261  Sum_probs=210.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc-Cc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF-GT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-gi  135 (382)
                      ..+||+|||||+||+++|..|++.|++|+|||    ....+||++.. .....++    .....++...+.+.+.++ ++
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~~G~~V~lie----~~~~~GG~~~~-~~k~~i~----~~~~~~~~~~~~~~l~~~~~v  197 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASRSGARVMLLD----ERAEAGGTLLD-TAGEQID----GMDSSAWIEQVTSELAEAEET  197 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSSGGGGG-SSCCEET----TEEHHHHHHHHHHHHHHSTTE
T ss_pred             cCCCEEEECCCHHHHHHHHHHHhCCCcEEEEe----CCCCCCceecc-CCccccC----CCCHHHHHHHHHHHHhhcCCc
Confidence            46899999999999999999999999999999    55567777763 1101111    223456666666666665 89


Q ss_pred             EEEEe-eEEEEEecCCc---------EEEEE-------CCeEEEcCEEEEccCCCCcCCCCCCCccccCCCccee----e
Q 016820          136 QIFTE-TVSKVDFKSRP---------FKVFT-------DSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISAC----A  194 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~---------~~v~~-------~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~----~  194 (382)
                      +++.+ +|..++.++..         +.+.+       +..++.||+||+|||+.|+.+++||.+.   ..+..+    .
T Consensus       198 ~~~~~~~V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p~~~~ipG~~~---~gv~~~~~~~~  274 (965)
T 2gag_A          198 THLQRTTVFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHERPIVFENNDR---PGIMLAGAVRS  274 (965)
T ss_dssp             EEESSEEEEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEECCCCCBTCCS---TTEEEHHHHHH
T ss_pred             EEEeCCEEEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCccCCCCCCCCCC---CCEEEhHHHHH
Confidence            99887 68887754321         11111       1125899999999999999999998764   122211    1


Q ss_pred             eccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEec-CCc
Q 016820          195 VCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGE-GDK  273 (382)
Q Consensus       195 ~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~-~~g  273 (382)
                      +.... ....+++++|||+|.+|+|+|..|.+.|.+|+++++.+.+...    .+.+++.||+++.+..+.++..+ +++
T Consensus       275 ~l~~~-~~~~gk~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~~----~~~l~~~GV~v~~~~~v~~i~~~~~~~  349 (965)
T 2gag_A          275 YLNRY-GVRAGARIAVATTNDSAYELVRELAATGGVVAVIDARSSISAA----AAQAVADGVQVISGSVVVDTEADENGE  349 (965)
T ss_dssp             HHHTT-CEESCSSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCHH----HHHHHHTTCCEEETEEEEEEEECTTSC
T ss_pred             HHHhc-CCCCCCeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccchh----HHHHHhCCeEEEeCCEeEEEeccCCCC
Confidence            12211 1234689999999999999999999999999999999877543    34577889999999999999984 221


Q ss_pred             eeeeeEEEEecc----CCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCC----cCCCCceEEecccCCc
Q 016820          274 KVLGGLKVKNLV----TGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTT----HTSVPGVFAAGDVQDK  345 (382)
Q Consensus       274 ~~~~~v~~~~~~----~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~----~t~~~~vya~GD~~~~  345 (382)
                        +..|++.+..    .++..++++|.|++++|++|++.++.     ...+++.+|+...    .|+.|+|||+|||++.
T Consensus       350 --v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~~l~~-----~~~g~i~vd~~~~~~v~~ts~p~IyAaGD~a~~  422 (965)
T 2gag_A          350 --LSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVVHLHS-----QRQGKLDWDTTIHAFVPADAVANQHLAGAMTGR  422 (965)
T ss_dssp             --EEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECCHHHH-----HTTCCEEEETTTTEEEECSCCTTEEECGGGGTC
T ss_pred             --EEEEEEEeccccCCCCceEEEEcCEEEECCCcCcChHHHH-----hCCCcEEEcCcccccccCCCCCCEEEEEecCCc
Confidence              5557776410    13336899999999999999998765     1257888888433    2899999999999975


Q ss_pred             hhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          346 KYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       346 ~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      .  ....|+.||+.+|.+|...+.
T Consensus       423 ~--~l~~A~~~G~~aA~~i~~~lg  444 (965)
T 2gag_A          423 L--DTASALSTGAATGAAAATAAG  444 (965)
T ss_dssp             C--SHHHHHHHHHHHHHHHHHHTT
T ss_pred             h--hHHHHHHHHHHHHHHHHHHcC
Confidence            3  345899999999999999875

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=99.97  E-value=1.4e-30  Score=251.42  Aligned_cols=304  Identities=15%  Similarity=0.133  Sum_probs=198.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-----CCeEEEecccCCCCCCCcceecCCCcc----------cCCCC--------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-----LKPILFEGWMANDIAPGGQLTTTSDVE----------NFPGF--------  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-----~~v~lie~~~~~~~~~gg~~~~~~~~~----------~~~~~--------  113 (382)
                      ..+||+|||||++|+++|..|++.|     .+|+|||+....++..+..+. .....          ..|..        
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~~~~~~~-~~~~~~~~~~~l~~~~~p~~~~~~~~~l  107 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWHGNTLVS-QSELQISFLKDLVSLRNPTSPYSFVNYL  107 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSSGGGCCS-SCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCcCCCCCC-CCcCCcchhhccccccCCCCCCChhHhh
Confidence            3579999999999999999999999     999999964322222111100 00000          00000        


Q ss_pred             -------------CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec---CCc--EEEEEC-Ce----EEEcCEEEEc
Q 016820          114 -------------PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK---SRP--FKVFTD-SK----SVLADTVIVA  169 (382)
Q Consensus       114 -------------~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~---~~~--~~v~~~-~~----~~~~d~lvlA  169 (382)
                                   .......++.+++++.+++++++++.+ +|+.|+.+   ++.  +.+.+. +.    ++.||+||+|
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA  187 (463)
T 3s5w_A          108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS  187 (463)
T ss_dssp             HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred             hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence                         012346788899999999999999888 69999876   443  245442 22    7999999999


Q ss_pred             cCCCCcCCCCCCCccccC--CCcceeeeccCCCCC----CCCCcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCCc
Q 016820          170 TGAVAKKLQFPGSDAFWN--RGISACAVCDGAAPI----FRDKPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSFR  241 (382)
Q Consensus       170 ~G~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~~~----~~~~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~~  241 (382)
                      ||..|..|+.  .+.+..  ..++...+.......    ..+++|+|||+|.+|+|+|..|.+.  +.+|+++.|.+.+.
T Consensus       188 tG~~p~~p~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~  265 (463)
T 3s5w_A          188 PGGTPRIPQV--FRALKGDGRVFHHSQYLEHMAKQPCSSGKPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALK  265 (463)
T ss_dssp             CCCEECCCGG--GGGGTTCTTEEEGGGHHHHHCC-------CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCC
T ss_pred             CCCCCCCcch--hhhcCCCCcEEECHHHHhhHHHhhhcccCCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCc
Confidence            9998877652  112222  223333333321111    1578999999999999999999998  89999999998652


Q ss_pred             ch--------------------------HHHHH-------------------------HhccCCCcEEEcCceeEEEEec
Q 016820          242 AS--------------------------KIMQN-------------------------RALTNPKIDVIWNSVVLEAYGE  270 (382)
Q Consensus       242 ~~--------------------------~~~~~-------------------------~~l~~~gv~~~~~~~v~~i~~~  270 (382)
                      ..                          ..+.+                         +.....||+++.++.++++..+
T Consensus       266 p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~  345 (463)
T 3s5w_A          266 PADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNYSVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATAT  345 (463)
T ss_dssp             BCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEE
T ss_pred             CccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCCCcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEec
Confidence            10                          01111                         1112269999999999999987


Q ss_pred             CCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC--hhhhcccccccCCCceeeCCCCCcCC----CCceEEecccCC
Q 016820          271 GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA--TKFVDGQLDLHSDGYIITKPGTTHTS----VPGVFAAGDVQD  344 (382)
Q Consensus       271 ~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~--~~~~~~~~~~~~~g~i~vd~~~~~t~----~~~vya~GD~~~  344 (382)
                      +++   ..+.+.+..+++..++++|.||+|||++|+  .+++. ++.... |++.||++++...    .|+||++|||..
T Consensus       346 ~~~---~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~~~~~~l~-~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~  420 (463)
T 3s5w_A          346 AQG---IELALRDAGSGELSVETYDAVILATGYERQLHRQLLE-PLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQA  420 (463)
T ss_dssp             TTE---EEEEEEETTTCCEEEEEESEEEECCCEECCC-CTTTG-GGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHH
T ss_pred             CCE---EEEEEEEcCCCCeEEEECCEEEEeeCCCCCCccchhH-HHHHHh-CCcccCcccccccCCCCCCeEEEcCCCcc
Confidence            753   335666443465667999999999999999  55655 332222 8899998544332    467999999974


Q ss_pred             c----hhhHHHHHHhhHHHHHHHHHHHH
Q 016820          345 K----KYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       345 ~----~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      .    .+.....|.+++..++....+..
T Consensus       421 ~~g~~~~~l~~~a~r~~~i~~~~~~~~~  448 (463)
T 3s5w_A          421 SHGLSDTLLSVLPVRAEEISGSLYQHLK  448 (463)
T ss_dssp             HHCTTTTSSTTHHHHHHHHHHHHHHHHC
T ss_pred             cCCcCccchhHHHHHHHHHHHHHHhhcC
Confidence            2    13345566666665554444443

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.97  E-value=6.2e-30  Score=249.91  Aligned_cols=294  Identities=16%  Similarity=0.204  Sum_probs=212.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHH-HcCCCeEEEecccCCCCCCCcceecCC----------CcccCC---------CCC-C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAA-RAELKPILFEGWMANDIAPGGQLTTTS----------DVENFP---------GFP-Q  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~-~~g~~v~lie~~~~~~~~~gg~~~~~~----------~~~~~~---------~~~-~  115 (382)
                      ..+||+|||||++|+++|..|+ +.|++|+|||+    ....||.|....          ....+.         .+. .
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~----~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~   82 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDK----ADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTT   82 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEEEES----SSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEEC----CCCCCCcccccCCCCceecCCcceeeeccccccccCCCCccc
Confidence            4579999999999999999999 89999999994    445666554210          000000         010 1


Q ss_pred             CCChHHHHHHHHHHHHHcCc--EEEEe-eEEEEEecCC--cEEEEECCe-EEEcCEEEEccC--CCCcCCCCCCCccccC
Q 016820          116 GILGGDLMDRCRNQSLRFGT--QIFTE-TVSKVDFKSR--PFKVFTDSK-SVLADTVIVATG--AVAKKLQFPGSDAFWN  187 (382)
Q Consensus       116 ~~~~~~~~~~~~~~~~~~gi--~~~~~-~v~~i~~~~~--~~~v~~~~~-~~~~d~lvlA~G--~~~~~~~~~g~~~~~~  187 (382)
                      .....++.+++.+.++++++  +++.+ +|++++.+++  .|.+.++++ ++.||+||+|+|  +.|+.|++||.+.+..
T Consensus        83 ~~~~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g  162 (540)
T 3gwf_A           83 YITQPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAINFPNLPGLDTFEG  162 (540)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSBCCCCCTTGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccCCCCCCCCccccCC
Confidence            23467899999999999998  77777 7999987765  688877554 599999999999  5899999999987766


Q ss_pred             CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------chHHH---HH---------
Q 016820          188 RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------ASKIM---QN---------  248 (382)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------~~~~~---~~---------  248 (382)
                      ..++...+.+..  ...+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+.       .....   .+         
T Consensus       163 ~~~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~~~~~~~  240 (540)
T 3gwf_A          163 ETIHTAAWPEGK--SLAGRRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQYSVPVGNRPVNPEQIAEIKADYDRIWER  240 (540)
T ss_dssp             EEEEGGGCCSSC--CCTTSEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCCCEEECCCCBCCHHHHHHHHHTHHHHHHH
T ss_pred             CEEEeecCCCcc--ccccceEEEECCCchHHHHHHHHHhhCCEEEEEECCCCccccCccCCCCHHHHHHHHhccHHHHHH
Confidence            667777666655  5678999999999999999999999999999999998741       00000   00         


Q ss_pred             --------------------------------------------------------------------------------
Q 016820          249 --------------------------------------------------------------------------------  248 (382)
Q Consensus       249 --------------------------------------------------------------------------------  248 (382)
                                                                                                      
T Consensus       241 ~~~~~~g~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~dp~~~~~l  320 (540)
T 3gwf_A          241 AKNSAVAFGFEESTLPAMSVSEEERNRIFQEAWDHGGGFRFMFGTFGDIATDEAANEAAASFIRAKVAEIIEDPETARKL  320 (540)
T ss_dssp             HHTSSSCSSSCCCCCCGGGSCHHHHHHHHHHHHHHCCHHHHHHTSCSCTTTCHHHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHhccccccccccchhhhhCCHHHHHHHHHHHHhcccchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHHHHHhC
Confidence                                                                                            


Q ss_pred             -----------------HhccCCCcEEEc--CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh
Q 016820          249 -----------------RALTNPKIDVIW--NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       249 -----------------~~l~~~gv~~~~--~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                                       +.+.+.+|+++.  ...|++|++++       |++.+   +  .++++|.||+|||++++..+
T Consensus       321 ~P~~~g~kR~~~~~~y~~~l~~~nV~lv~~~~~~I~~it~~g-------v~~~d---G--~~~~~DvIV~ATGf~~~~~~  388 (540)
T 3gwf_A          321 MPKGLFAKRPLCDSGYYEVYNRPNVEAVAIKENPIREVTAKG-------VVTED---G--VLHELDVLVFATGFDAVDGN  388 (540)
T ss_dssp             CCCSCCCSSCEEESSTGGGGGSTTEEEEETTTSCEEEECSSE-------EEETT---C--CEEECSEEEECCCBSCSSHH
T ss_pred             CCCCCCccccCCCccHHHHhcCCCEEEEeCCCCCccEEecCe-------EEcCC---C--CEEECCEEEECCccCccccC
Confidence                             012356888875  67888887754       66543   4  67999999999999998754


Q ss_pred             hcccccccCC----------CceeeCCCCCcCCCCceEEe-cccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          310 VDGQLDLHSD----------GYIITKPGTTHTSVPGVFAA-GDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       310 ~~~~~~~~~~----------g~i~vd~~~~~t~~~~vya~-GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +. .+.+...          +.+.........+.||+|.+ |.... -......+..|+.++++.|.+-..+
T Consensus       389 ~~-~~~i~g~~G~~l~~~w~~~~~~y~g~~v~gfPN~f~~~Gp~~~-~~s~~~~~e~q~~~i~~~i~~~~~~  458 (540)
T 3gwf_A          389 YR-RIEIRGRDGLHINDHWDGQPTSYLGVSTANFPNWFMVLGPNGP-FTNLPPSIETQVEWISDTIGYAERN  458 (540)
T ss_dssp             HH-TSEEECGGGCBHHHHTSSSCCCBTTTBCTTCTTEEESSCSSCB-CSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cC-cceEECCCCcCHHHhhccChhhccccccCCCCceEEEecCCCC-CccHHHHHHHHHHHHHHHHHHHHHC
Confidence            43 2222222          23333333455689999999 87653 2234567778888888877665543

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=99.97  E-value=9.3e-32  Score=271.04  Aligned_cols=279  Identities=18%  Similarity=0.181  Sum_probs=209.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc-C
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF-G  134 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g  134 (382)
                      ..++||+|||||++|+++|+.|++.|++|+|||    +....||.+....   .+|+   .....++.+++...+.++ +
T Consensus       389 ~~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE----~~~~~GG~~~~~~---~~p~---~~~~~~~~~~~~~~~~~~~g  458 (690)
T 3k30_A          389 ESDARVLVVGAGPSGLEAARALGVRGYDVVLAE----AGRDLGGRVTQES---ALPG---LSAWGRVKEYREAVLAELPN  458 (690)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC----SSSSSCTHHHHHH---TSTT---CGGGGHHHHHHHHHHHTCTT
T ss_pred             cccceEEEECCCHHHHHHHHHHHHCCCeEEEEe----cCCCCCCEeeecc---CCCc---hhHHHHHHHHHHHHHHHcCC
Confidence            356899999999999999999999999999999    5556777765421   2222   234577888888888887 8


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC--------CcCCCCCCCccccCCCcceeeeccCCCCCCCCC
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV--------AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDK  206 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  206 (382)
                      ++++.++.  +..        .+..++.||+||+|||+.        |..|++||.+..  ............  ...++
T Consensus       459 v~~~~~~~--v~~--------~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~--~v~~~~~~l~~~--~~~g~  524 (690)
T 3k30_A          459 VEIYRESP--MTG--------DDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGM--QVLGPDDLFAGR--LPDGK  524 (690)
T ss_dssp             EEEESSCC--CCH--------HHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTS--EEECHHHHHTTC--CCSSS
T ss_pred             CEEEECCe--ecH--------HHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCC--cEEcHHHHhCCC--CCCCC
Confidence            98877631  110        012347899999999998        446777776531  112222333333  45678


Q ss_pred             cEEEEc--CCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          207 PLAVIG--GGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       207 ~v~VvG--~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      +++|||  +|.+|+|+|..|.+.|.+|+++++.+.+..      ......+.+++.||+++.++++.+++.++       
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~~~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~-------  597 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSWTNNTFEVNRIQRRLIENGVARVTDHAVVAVGAGG-------  597 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGGGGGGTCHHHHHHHHHHTTCEEEESEEEEEEETTE-------
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccccccchhHHHHHHHHHHCCCEEEcCcEEEEEECCe-------
Confidence            899999  999999999999999999999999887632      12333466788999999999999998654       


Q ss_pred             EEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHH
Q 016820          279 LKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGC  358 (382)
Q Consensus       279 v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~  358 (382)
                      +.+....++++.++++|.|++|+|++|+..++. .+.  ..+.        +|+.|+||++|||+.  ++.+..|+.||+
T Consensus       598 ~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~l~~-~l~--~~~~--------~t~~~~VyaiGD~~~--~~~~~~A~~~g~  664 (690)
T 3k30_A          598 VTVRDTYASIERELECDAVVMVTARLPREELYL-DLV--ARRD--------AGEIASVRGIGDAWA--PGTIAAAVWSGR  664 (690)
T ss_dssp             EEEEETTTCCEEEEECSEEEEESCEEECCHHHH-HHH--HHHH--------HTSCSEEEECGGGTS--CBCHHHHHHHHH
T ss_pred             EEEEEccCCeEEEEECCEEEECCCCCCChHHHH-HHh--hhhc--------ccCCCCEEEEeCCCc--hhhHHHHHHHHH
Confidence            455543345667899999999999999998775 221  1111        678999999999996  356777999999


Q ss_pred             HHHHHHHHHHHHccCccccc
Q 016820          359 MAALEAEHYLQEIGSQEDKS  378 (382)
Q Consensus       359 ~aa~~i~~~l~~~~~~~~~~  378 (382)
                      .+|.+|...|.+++..++..
T Consensus       665 ~aa~~i~~~l~g~~~~p~~~  684 (690)
T 3k30_A          665 RAAEEFDAVLPSNDEVPFRR  684 (690)
T ss_dssp             HHHHHTTCCCCCTTSCSSCC
T ss_pred             HHHHHHHhhccCCCCCCcCh
Confidence            99999999988877665544

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=99.97  E-value=1.2e-31  Score=271.31  Aligned_cols=275  Identities=21%  Similarity=0.218  Sum_probs=195.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF---  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  133 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    +....||.+.....   +|+++   ....+.+++...++.+   
T Consensus       388 ~~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie----~~~~~GG~~~~~~~---~pg~~---~~~~~~~~~~~~i~~~~~~  457 (729)
T 1o94_A          388 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTD----TAEKIGGHLNQVAA---LPGLG---EWSYHRDYRETQITKLLKK  457 (729)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC----SSSSTTTTHHHHTT---STTCG---GGHHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEe----CCCCcCCeeeeccc---CCChH---HHHHHHHHHHHHHHHhhcc
Confidence            45899999999999999999999999999999    45567887764322   23322   2345555555555443   


Q ss_pred             ---CcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCC--------CcCCCCCCCccccCCCcceeeeccCCCCC
Q 016820          134 ---GTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV--------AKKLQFPGSDAFWNRGISACAVCDGAAPI  202 (382)
Q Consensus       134 ---gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~--------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  202 (382)
                         ++++..+         ..+.+. +...+.||+||+|||+.        |+.|++||.+.+.........++...  .
T Consensus       458 ~~~~v~i~~~---------~~v~~~-~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~~--~  525 (729)
T 1o94_A          458 NKESQLALGQ---------KPMTAD-DVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDGK--K  525 (729)
T ss_dssp             STTCEEECSC---------CCCCHH-HHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHCC--S
T ss_pred             cCCceEEEeC---------eEEehh-hccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcCC--C
Confidence               3443222         111111 22347899999999997        56678888764322222223333433  4


Q ss_pred             CCCCcEEEEc--CCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820          203 FRDKPLAVIG--GGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK  274 (382)
Q Consensus       203 ~~~~~v~VvG--~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~  274 (382)
                      ..+++|+|||  +|.+|+|+|..|.++|.+|+++++.+ +..      ......+.+++.||+++.++.+.+++.+.   
T Consensus       526 ~~gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~~~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~---  601 (729)
T 1o94_A          526 KIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LANYMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPGR---  601 (729)
T ss_dssp             CCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TTHHHHHTTCHHHHHHHHHHTTCEEECSEEEEEEETTE---
T ss_pred             CCCCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-ccccccccccHHHHHHHHHhCCCEEEcCcEEEEEECCe---
Confidence            4578999999  99999999999999999999999988 422      12333456778899999999999998542   


Q ss_pred             eeeeEEEEeccCC------------------ceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCce
Q 016820          275 VLGGLKVKNLVTG------------------QVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGV  336 (382)
Q Consensus       275 ~~~~v~~~~~~~~------------------~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~v  336 (382)
                          +.+.....+                  +...+++|.|++++|.+|++.++. .+..      .+|+ +++|+.|+|
T Consensus       602 ----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~l~~-~l~~------~vd~-~~~t~~~~V  669 (729)
T 1o94_A          602 ----MEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECTLWN-ELKA------RESE-WAENDIKGI  669 (729)
T ss_dssp             ----EEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCHHHH-HHHH------TGGG-TGGGTCCEE
T ss_pred             ----EEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChHHHH-HHhh------hccc-ccccCCCCe
Confidence                334321111                  123499999999999999998765 3321      2566 678999999


Q ss_pred             EEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          337 FAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       337 ya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      ||+|||+.  ++.+..|+.+|+.+|.+|..++...
T Consensus       670 yAiGD~~~--~~~~~~A~~~G~~aA~~i~~~l~~~  702 (729)
T 1o94_A          670 YLIGDAEA--PRLIADATFTGHRVAREIEEANPQI  702 (729)
T ss_dssp             EECGGGTS--CCCHHHHHHHHHHHHHTTTSSCTTS
T ss_pred             EEEeCccc--hhhHHHHHHHHHHHHHHhhhhcccC
Confidence            99999986  4678889999999999998876543

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=99.96  E-value=6e-28  Score=236.13  Aligned_cols=294  Identities=15%  Similarity=0.203  Sum_probs=204.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc----------------c----cCCCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV----------------E----NFPGFPQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~----------------~----~~~~~~~~  116 (382)
                      ..+||+|||||++|+.+|+.|++.|++|+|||    +....||.|......                .    .+......
T Consensus         8 ~~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE----~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~   83 (545)
T 3uox_A            8 PALDAVVIGAGVTGIYQAFLINQAGMKVLGIE----AGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENF   83 (545)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEe----CCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccC
Confidence            45799999999999999999999999999999    445667765421100                0    00001123


Q ss_pred             CChHHHHHHHHHHHHHcCc--EEEEe-eEEEEEecC--CcEEEEECCe-EEEcCEEEEccC--CCCcCCCCCCCccccCC
Q 016820          117 ILGGDLMDRCRNQSLRFGT--QIFTE-TVSKVDFKS--RPFKVFTDSK-SVLADTVIVATG--AVAKKLQFPGSDAFWNR  188 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi--~~~~~-~v~~i~~~~--~~~~v~~~~~-~~~~d~lvlA~G--~~~~~~~~~g~~~~~~~  188 (382)
                      ....++.+++++.++++++  ++..+ +|++++.++  +.|.+.++++ ++.||+||+|+|  +.|+.|++||.+.+...
T Consensus        84 ~~~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p~~p~ipG~~~f~g~  163 (545)
T 3uox_A           84 ASQPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSASRMPDIKGIDSFKGE  163 (545)
T ss_dssp             CBHHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC---CCCTTGGGCCSE
T ss_pred             CCHHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCCcCCCCCCccccCCC
Confidence            4678999999999999987  66666 688887654  4678877554 699999999999  78999999999887666


Q ss_pred             CcceeeeccC-------CCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------hHH----HH---
Q 016820          189 GISACAVCDG-------AAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------SKI----MQ---  247 (382)
Q Consensus       189 ~~~~~~~~~~-------~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------~~~----~~---  247 (382)
                      .++...+...       .  ...+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+..       ...    +.   
T Consensus       164 ~~h~~~~~~~~~~~~~~~--~~~~krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~~i~p~~~~~~~~~~~~~l~~~~  241 (545)
T 3uox_A          164 SFHSSRWPTDAEGAPKGV--DFTGKRVGVIGTGATGVQIIPIAAETAKELYVFQRTPNWCTPLGNSPMSKEKMDSLRNRY  241 (545)
T ss_dssp             EEEGGGCCBCTTSCBSCC--CCBTCEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCCCCEECCCCBCCHHHHHHHHHTH
T ss_pred             eEEccccccccccccccc--ccCCCeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCCccccCCcCCCCHHHHHHHHhhh
Confidence            6666666554       3  45689999999999999999999999999999999987410       000    00   


Q ss_pred             --------------------------------------------------------------------------------
Q 016820          248 --------------------------------------------------------------------------------  247 (382)
Q Consensus       248 --------------------------------------------------------------------------------  247 (382)
                                                                                                      
T Consensus       242 p~~~~~~~~~~~~~~~~~~~~~~~~~~~e~r~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~  321 (545)
T 3uox_A          242 PTILEYVKSTDTAFPYHRDPRKGTDVSESERDAFFEELYRQPGYGIWLSGFRDLLLNKESNKFLADFVAKKIRQRVKDPV  321 (545)
T ss_dssp             HHHHHHHTTSSSSSSCCCBSSCGGGSCHHHHHHHHHHHHHSSSTHHHHTSBTTTTTCHHHHHHHHHHHHHHHHHHCSCHH
T ss_pred             HHHHHHHhhcccccccccccchhhhCCHHHHHHHHHHHHhhhhHHHHHhhhhhhhcCHHHHHHHHHHHHHHHHHHcCCHH
Confidence                                                                                            


Q ss_pred             -----------------------HHhccCCCcEEEc--CceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC
Q 016820          248 -----------------------NRALTNPKIDVIW--NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       248 -----------------------~~~l~~~gv~~~~--~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                                             -+.+.+.+|+++.  ...|++|++++       |.+.+     + ++++|.||+|||
T Consensus       322 ~~~~l~P~~~~~g~kR~~~~~~y~~al~~~nV~lv~~~~~~I~~it~~g-------v~~~d-----G-~~~~D~IV~ATG  388 (545)
T 3uox_A          322 VAEKLIPKDHPFGAKRVPMETNYYETYNRDNVHLVDIREAPIQEVTPEG-------IKTAD-----A-AYDLDVIIYATG  388 (545)
T ss_dssp             HHHHTSCSSSCTTSSCCCEESSHHHHTTSTTEEEEETTTSCEEEEETTE-------EEESS-----C-EEECSEEEECCC
T ss_pred             HHHhCCCCCCCCCCCccCCCccHHHHhcCCCEEEEecCCCCceEEccCe-------EEeCC-----C-eeecCEEEECCc
Confidence                                   0112344778775  67788887654       66543     4 799999999999


Q ss_pred             CCCChhhhcccccccCCCceeeCC----------CCCcCCCCceEEecccCCc--hhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          303 HEPATKFVDGQLDLHSDGYIITKP----------GTTHTSVPGVFAAGDVQDK--KYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       303 ~~p~~~~~~~~~~~~~~g~i~vd~----------~~~~t~~~~vya~GD~~~~--~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      +++.+.++. .+.+...+...+++          .....+.||+|.+.--..+  -......+..|+.++++.|.+-..+
T Consensus       389 f~~~~~~~~-~~~i~g~~G~~l~~~w~~~~~~y~g~~~~gfPN~f~~~gp~~~~~~~s~~~~~e~~~~~i~~~i~~~~~~  467 (545)
T 3uox_A          389 FDAVTGSLD-RIDIRGKDNVRLIDAWAEGPSTYLGLQARGFPNFFTLVGPHNGSTFCNVGVCGGLQAEWVLRMISYMKDN  467 (545)
T ss_dssp             CBSSSCSCT-TSEEECGGGCBHHHHTTTSCCCBTTTBCTTCTTEEECSSGGGTGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccCC-CceEECCCCccHHHhhccccceeeccccCCCCcEEEEeCCCCCCccccHHHHHHHHHHHHHHHHHHHHHC
Confidence            998765544 33332222222221          2345689999998543321  1234567778888888877665554

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=99.96  E-value=4.8e-29  Score=250.66  Aligned_cols=256  Identities=22%  Similarity=0.276  Sum_probs=188.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    +....||.+.....   +   |......++.+++.+.+++++++
T Consensus       372 ~~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie----~~~~~gg~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~gv~  441 (671)
T 1ps9_A          372 QKKNLAVVGAGPAGLAFAINAAARGHQVTLFD----AHSEIGGQFNIAKQ---I---PGKEEFYETLRYYRRMIEVTGVT  441 (671)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHTTTCEEEEEE----SSSSSCTTHHHHTT---S---TTCTTHHHHHHHHHHHHHHHTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEe----CCCCCCCeeecccc---C---CCHHHHHHHHHHHHHHHHHcCCE
Confidence            45899999999999999999999999999999    44556776653221   1   22233456677788888889999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEE-EcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSV-LADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGD  215 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~-~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~  215 (382)
                      ++.++....             ..+ .||+||+|||++|+.|++||.+..  ........+...  ...+++|+|||+|.
T Consensus       442 ~~~~~~v~~-------------~~~~~~d~lviAtG~~p~~~~i~G~~~~--~v~~~~~~l~~~--~~~~~~VvVIGgG~  504 (671)
T 1ps9_A          442 LKLNHTVTA-------------DQLQAFDETILASGIVPRTPPIDGIDHP--KVLSYLDVLRDK--APVGNKVAIIGCGG  504 (671)
T ss_dssp             EEESCCCCS-------------SSSCCSSEEEECCCEEECCCCCBTTTST--TEEEHHHHHTSC--CCCCSEEEEECCHH
T ss_pred             EEeCcEecH-------------HHhhcCCEEEEccCCCcCCCCCCCCCCC--cEeeHHHHhhCC--CCCCCeEEEECCCh
Confidence            988852111             113 899999999999999999987641  122222333333  44689999999999


Q ss_pred             hHHHHHHHHhhcCC-------------------------------------EEEEEEeCCCCc------chHHHHHHhcc
Q 016820          216 SAMEEANFLTKYGS-------------------------------------KVYIIHRRDSFR------ASKIMQNRALT  252 (382)
Q Consensus       216 ~a~e~a~~l~~~g~-------------------------------------~v~~~~~~~~~~------~~~~~~~~~l~  252 (382)
                      +|+|+|..|.+.|.                                     +|+++.+.+...      .......+.++
T Consensus       505 ~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~~~~~~~~~~~l~  584 (671)
T 1ps9_A          505 IGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLL  584 (671)
T ss_dssp             HHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHH
T ss_pred             hHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccccccHHHHHHHHH
Confidence            99999999998763                                     566676654321      12233346677


Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTS  332 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~  332 (382)
                      +.||+++.++.+.+++.+.       +.+.  .+++..++++|.|++++|++|++.++. .+.               ..
T Consensus       585 ~~GV~v~~~~~v~~i~~~~-------v~~~--~~G~~~~i~~D~Vi~a~G~~p~~~l~~-~l~---------------~~  639 (671)
T 1ps9_A          585 SRGVKMIPGVSYQKIDDDG-------LHVV--INGETQVLAVDNVVICAGQEPNRALAQ-PLI---------------DS  639 (671)
T ss_dssp             HTTCEEECSCEEEEEETTE-------EEEE--ETTEEEEECCSEEEECCCEEECCTTHH-HHH---------------TT
T ss_pred             hcCCEEEeCcEEEEEeCCe-------EEEe--cCCeEEEEeCCEEEECCCccccHHHHH-HHH---------------hc
Confidence            8899999999999998532       5553  125456899999999999999988775 221               12


Q ss_pred             CCceEEecccCCchhhHHHHHHhhHHHHHHHH
Q 016820          333 VPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA  364 (382)
Q Consensus       333 ~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i  364 (382)
                      .++||++|||+...++.+..|++||..+|.+|
T Consensus       640 g~~v~aiGD~~~~~~~~~~~A~~~g~~aA~~i  671 (671)
T 1ps9_A          640 GKTVHLIGGCDVAMELDARRAIAQGTRLALEI  671 (671)
T ss_dssp             TCCEEECGGGTCCSSCCHHHHHHHHHHHHHHC
T ss_pred             CCCEEEECCcCccCchhHHHHHHHHHHHHHhC
Confidence            37999999998765557999999999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.96  E-value=1.3e-29  Score=245.82  Aligned_cols=257  Identities=21%  Similarity=0.229  Sum_probs=188.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+||+|||||++|+++|.+|++. ++|+|||    +....||.+.....  .+.+++.  ...++...+.+.+ +.+++
T Consensus       107 ~~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie----~~~~~GG~~~~~~~--~~~g~~~--~~~~~~~~l~~~l-~~~v~  176 (493)
T 1y56_A          107 VVVDVAIIGGGPAGIGAALELQQY-LTVALIE----ERGWLGGDMWLKGI--KQEGFNK--DSRKVVEELVGKL-NENTK  176 (493)
T ss_dssp             EEESCCEECCSHHHHHHHHHHTTT-CCEEEEC----TTSSSSCSGGGTCS--EETTTTE--EHHHHHHHHHHTC-CTTEE
T ss_pred             ccCCEEEECccHHHHHHHHHHHhc-CCEEEEe----CCCCCCCeeecccc--ccCCCCC--CHHHHHHHHHHHH-hcCCE
Confidence            457999999999999999999999 9999999    44556776653221  1122222  3455555555444 56888


Q ss_pred             EEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCCcCCCCCCCccccCCCcceee----eccCCCCCCCCCc
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVAKKLQFPGSDAFWNRGISACA----VCDGAAPIFRDKP  207 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~----~~~~~~~~~~~~~  207 (382)
                      ++.+ +|.+++.+++.+.+..  ++.  .+.||+||+|||+.|+.|+++|.+.   ..++...    +.... ....+++
T Consensus       177 ~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~~~g~~~---~gv~~~~~~~~~~~~~-~~~~~~~  252 (493)
T 1y56_A          177 IYLETSALGVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAIDSTMLFENNDM---PGVFRRDFALEVMNVW-EVAPGRK  252 (493)
T ss_dssp             EETTEEECCCEECSSSEEEEEEETTEEEEEEESCEEECCCEEECCCCCTTTTS---TTEEEHHHHHHHHHTS-CBCSCSE
T ss_pred             EEcCCEEEEEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCccCCCCCCCCC---CCEEEcHHHHHHHHhc-ccCCCCE
Confidence            8776 6888888877665543  333  5899999999999999988988764   1111111    11111 1335689


Q ss_pred             EEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC
Q 016820          208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG  287 (382)
Q Consensus       208 v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~  287 (382)
                      ++|+|+|.+++|                             +.+++.||+++.+..+.++..++.   +..+.+     .
T Consensus       253 vvViGgG~~gle-----------------------------~~l~~~GV~v~~~~~v~~i~~~~~---v~~v~~-----~  295 (493)
T 1y56_A          253 VAVTGSKADEVI-----------------------------QELERWGIDYVHIPNVKRVEGNEK---VERVID-----M  295 (493)
T ss_dssp             EEEESTTHHHHH-----------------------------HHHHHHTCEEEECSSEEEEECSSS---CCEEEE-----T
T ss_pred             EEEECCCHHHHH-----------------------------HHHHhCCcEEEeCCeeEEEecCCc---eEEEEe-----C
Confidence            999999999988                             224457999999999999987653   333443     2


Q ss_pred             ceEEEecCeEEEeeCCCCChhhhc-ccc--cccCCCcee-eCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHH
Q 016820          288 QVSDLKVSGLFFAIGHEPATKFVD-GQL--DLHSDGYII-TKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALE  363 (382)
Q Consensus       288 ~~~~~~~D~vi~~~G~~p~~~~~~-~~~--~~~~~g~i~-vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~  363 (382)
                      ++.++++|.|++++|.+|+..++. .++  .++++|++. +|+ +++ +.|+||++|||++.  ..+..|..||+.+|.+
T Consensus       296 ~g~~i~aD~Vv~a~G~~p~~~l~~~~g~~~~~~~~g~i~~vd~-~~~-s~~~vya~GD~~~~--~~~~~A~~~g~~aa~~  371 (493)
T 1y56_A          296 NNHEYKVDALIFADGRRPDINPITQAGGKLRFRRGYYSPVLDE-YHR-IKDGIYVAGSAVSI--KPHYANYLEGKLVGAY  371 (493)
T ss_dssp             TCCEEECSEEEECCCEEECCHHHHHTTCCEEEETTEEEECCCT-TSE-EETTEEECSTTTCC--CCHHHHHHHHHHHHHH
T ss_pred             CCeEEEeCEEEECCCcCcCchHHHhcCCCccccCCceeecccc-ccC-cCCCEEEEeccCCc--cCHHHHHHHHHHHHHH
Confidence            236799999999999999998776 344  346788987 787 566 89999999999974  4788999999999999


Q ss_pred             HHHHH
Q 016820          364 AEHYL  368 (382)
Q Consensus       364 i~~~l  368 (382)
                      |..++
T Consensus       372 i~~~l  376 (493)
T 1y56_A          372 ILKEF  376 (493)
T ss_dssp             HHHHT
T ss_pred             HHHHc
Confidence            99876

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.96  E-value=1.7e-27  Score=233.10  Aligned_cols=178  Identities=21%  Similarity=0.263  Sum_probs=140.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC---C-------cccC----------CCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS---D-------VENF----------PGFPQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~---~-------~~~~----------~~~~~~  116 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||    +....||.|....   .       ...+          ......
T Consensus        20 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE----~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~   95 (549)
T 4ap3_A           20 TSYDVVVVGAGIAGLYAIHRFRSQGLTVRAFE----AASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKY   95 (549)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSS
T ss_pred             CCCCEEEECchHHHHHHHHHHHhCCCCEEEEe----CCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCC
Confidence            45899999999999999999999999999999    4455666654211   0       0000          000113


Q ss_pred             CChHHHHHHHHHHHHHcCc--EEEEe-eEEEEEecCC--cEEEEECCe-EEEcCEEEEccC--CCCcCCCCCCCccccCC
Q 016820          117 ILGGDLMDRCRNQSLRFGT--QIFTE-TVSKVDFKSR--PFKVFTDSK-SVLADTVIVATG--AVAKKLQFPGSDAFWNR  188 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi--~~~~~-~v~~i~~~~~--~~~v~~~~~-~~~~d~lvlA~G--~~~~~~~~~g~~~~~~~  188 (382)
                      ....++.+++++.++++++  +++.+ +|++++.+++  .|.+.++++ ++.||+||+|+|  +.|+.|++||.+.+...
T Consensus        96 ~~~~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p~~p~ipG~~~f~g~  175 (549)
T 4ap3_A           96 ATQPEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNANTPAFDGLDRFTGD  175 (549)
T ss_dssp             CBHHHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEECCCCCCTTGGGCCSE
T ss_pred             CCHHHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCc
Confidence            4568999999999999998  67777 7999987765  678877554 599999999999  78999999999877666


Q ss_pred             Ccceeeec-cCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          189 GISACAVC-DGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       189 ~~~~~~~~-~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .++...+. +..  ...+++|+|||+|.+|+|+|..|.+.+.+|+++.|.+.+
T Consensus       176 ~~~~~~~~~~~~--~~~~krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~~  226 (549)
T 4ap3_A          176 IVHTARWPHDGV--DFTGKRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSANY  226 (549)
T ss_dssp             EEEGGGCCTTCC--CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             eEEecccccccc--ccCCCEEEEECCCchHHHHHHHHHhhCCEEEEEECCCCc
Confidence            66766665 333  457899999999999999999999999999999999874

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=99.96  E-value=5.5e-27  Score=230.14  Aligned_cols=296  Identities=15%  Similarity=0.198  Sum_probs=206.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC---C-------CcccCC---------CC-CCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT---S-------DVENFP---------GF-PQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~---~-------~~~~~~---------~~-~~~  116 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||+    ...+||.|...   .       ....+.         .+ ...
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~----~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~   90 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIET----AGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   90 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS----SSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeC----CCCCCCcccccCCCceeecccccccccccChhhhhccCccccc
Confidence            358999999999999999999999999999994    44556655311   0       000000         01 123


Q ss_pred             CChHHHHHHHHHHHHHcC--cEEEEe-eEEEEEecC--CcEEEEECCe-EEEcCEEEEccCC--CCcCCCCCCCccccCC
Q 016820          117 ILGGDLMDRCRNQSLRFG--TQIFTE-TVSKVDFKS--RPFKVFTDSK-SVLADTVIVATGA--VAKKLQFPGSDAFWNR  188 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~g--i~~~~~-~v~~i~~~~--~~~~v~~~~~-~~~~d~lvlA~G~--~~~~~~~~g~~~~~~~  188 (382)
                      ....++.+++...+++++  .+++.+ +|.+++.++  +.|.+.++++ ++.+|+||+|+|.  .|+.|.+||.+.+.+.
T Consensus        91 ~~~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~  170 (542)
T 1w4x_A           91 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGN  170 (542)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSE
T ss_pred             CCHHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCc
Confidence            456788999999888876  456667 688888765  3688877554 7999999999995  6888899998776665


Q ss_pred             CcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------chHHHH--------------
Q 016820          189 GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------ASKIMQ--------------  247 (382)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------~~~~~~--------------  247 (382)
                      .++...+..... ...+++|+|||+|.+|++++..|.+.+.+|+++.|.+.+.       ......              
T Consensus       171 ~~hs~~~~~~~~-~~~gk~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~~~~p~~~~~~~~~~~~~~~~~~p~l~~~~  249 (542)
T 1w4x_A          171 LYHTGNWPHEPV-DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHFAVPARNAPLDPEFLADLKKRYAEFREES  249 (542)
T ss_dssp             EEEGGGCCSSCC-CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCCEEECCCCBCCHHHHHHHHTTHHHHHHHH
T ss_pred             eEECCCCCCchh-ccCCCEEEEECCCccHHHHHHHHhhcCceEEEEEcCCcccccCCCCCCCHHHHHHHHhhCHHHHHHH
Confidence            566665552211 4568999999999999999999999999999999887551       000000              


Q ss_pred             ----------------------------------------------------------------H---------------
Q 016820          248 ----------------------------------------------------------------N---------------  248 (382)
Q Consensus       248 ----------------------------------------------------------------~---------------  248 (382)
                                                                                      +               
T Consensus       250 ~~~~~G~~~~~d~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~P~  329 (542)
T 1w4x_A          250 RNTPGGTHRYQGPKSALEVSDEELVETLERYWQEGGPDILAAYRDILRDRDANERVAEFIRNKIRNTVRDPEVAERLVPK  329 (542)
T ss_dssp             HTSSSSSCCCCCCSCTTTSCHHHHHHHHHHHHHHCSGGGGGSSTTTTTCHHHHHHHHHHHHHHHHHHCSSHHHHHHHSCC
T ss_pred             HhhccccccCccccchhcCCHHHHHHHHHHHHhhcchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHcCCHHHHHhcCCC
Confidence                                                                            0               


Q ss_pred             ----------------HhccCCCcEEE--cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh
Q 016820          249 ----------------RALTNPKIDVI--WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV  310 (382)
Q Consensus       249 ----------------~~l~~~gv~~~--~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~  310 (382)
                                      +.+.+.+|+++  .+..|++++++.       |.+.     + .++++|.||+|||+++++.++
T Consensus       330 ~~~~~~kr~~~~~~y~~~~~~~~v~lv~~~~~~i~~i~~~g-------v~~~-----d-~~~~~D~ii~atG~~~~~~~~  396 (542)
T 1w4x_A          330 GYPFGTKRLILEIDYYEMFNRDNVHLVDTLSAPIETITPRG-------VRTS-----E-REYELDSLVLATGFDALTGAL  396 (542)
T ss_dssp             SSCSSSSCCEEESSHHHHTTSTTEEEEETTTSCEEEECSSE-------EEES-----S-CEEECSEEEECCCCCCTTHHH
T ss_pred             CCCccccCCCCCccHHHHhCCCCEEEEecCCCCceEEcCCe-------EEeC-----C-eEEecCEEEEcCCccccccCc
Confidence                            01122456665  355677776433       5543     2 579999999999999987665


Q ss_pred             ccccccc-CCCceeeC---------CCCCcCCCCceEEe-cccCCch-hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          311 DGQLDLH-SDGYIITK---------PGTTHTSVPGVFAA-GDVQDKK-YRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       311 ~~~~~~~-~~g~i~vd---------~~~~~t~~~~vya~-GD~~~~~-~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      . .+.+. .+|....+         ......+.||+|++ |+.+... ...+..+..|+..++++|.+...+.
T Consensus       397 ~-~~~i~g~~G~~l~~~w~~~~~~y~~~~v~~~Pn~f~~~G~~~~~~~~~~~~~~e~q~~~ia~~i~~~~~~~  468 (542)
T 1w4x_A          397 F-KIDIRGVGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMFKNG  468 (542)
T ss_dssp             H-TSEEECGGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             C-ceeeECCCCCCHHHhhcCchheecccccCCCCceEEEcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence            5 34322 23333332         11334578999998 9986432 2345788999999999998887654

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=99.90  E-value=4e-22  Score=193.48  Aligned_cols=307  Identities=19%  Similarity=0.139  Sum_probs=187.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC--------------CCeEEEecccCCCCCCCcceecCC-------Ccc-------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE--------------LKPILFEGWMANDIAPGGQLTTTS-------DVE-------  108 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g--------------~~v~lie~~~~~~~~~gg~~~~~~-------~~~-------  108 (382)
                      ..+||||||+||+||++|..|.+.|              .....+|+.....+..|..+....       +..       
T Consensus        38 ~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s  117 (501)
T 4b63_A           38 ELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRS  117 (501)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTC
T ss_pred             CcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCC
Confidence            4589999999999999999998763              356778865444444333222111       000       


Q ss_pred             cC---------------CCC-CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC--------CcEEEEECC-----
Q 016820          109 NF---------------PGF-PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS--------RPFKVFTDS-----  158 (382)
Q Consensus       109 ~~---------------~~~-~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~--------~~~~v~~~~-----  158 (382)
                      .|               +.. ...+...++.+|+++++++++..+.++ +|+++.+.+        +.|+|.+.+     
T Consensus       118 ~~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~  197 (501)
T 4b63_A          118 SFTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGE  197 (501)
T ss_dssp             TTSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCC
T ss_pred             ccchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCce
Confidence            00               000 124577899999999999998888888 688887643        247776521     


Q ss_pred             -eEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeecc------CCCCCCCCCcEEEEcCCchHHHHHHHHhhc--CC
Q 016820          159 -KSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCD------GAAPIFRDKPLAVIGGGDSAMEEANFLTKY--GS  229 (382)
Q Consensus       159 -~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~------~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~--g~  229 (382)
                       .++.++.||+|+|..|+.|..++   +..+.+|...+.+      ..  ...+|+|+|||+|.+|+|++..|.+.  +.
T Consensus       198 ~~~~~ar~vVlatG~~P~iP~~~~---~~g~v~Hss~y~~~~~~~~~~--~~~gKrV~VVG~G~SA~ei~~~L~~~~~~~  272 (501)
T 4b63_A          198 ISARRTRKVVIAIGGTAKMPSGLP---QDPRIIHSSKYCTTLPALLKD--KSKPYNIAVLGSGQSAAEIFHDLQKRYPNS  272 (501)
T ss_dssp             EEEEEEEEEEECCCCEECCCTTSC---CCTTEEEGGGHHHHHHHHSCC--TTSCCEEEEECCSHHHHHHHHHHHHHSTTC
T ss_pred             EEEEEeCEEEECcCCCCCCCCCCC---CCcceeeccccccchhhcccc--ccCCcEEEEECCcHHHHHHHHHHHhcCCCc
Confidence             35889999999998877765443   3345566666543      22  46789999999999999999999875  68


Q ss_pred             EEEEEEeCCCCcch---------------HH---------------------------HHH--------Hhcc-----CC
Q 016820          230 KVYIIHRRDSFRAS---------------KI---------------------------MQN--------RALT-----NP  254 (382)
Q Consensus       230 ~v~~~~~~~~~~~~---------------~~---------------------------~~~--------~~l~-----~~  254 (382)
                      +|+++.|++.+...               ..                           +.+        +.+.     ..
T Consensus       273 ~v~~~~R~~~~~p~~~s~~~~~~f~p~~~~~f~~l~~~~r~~~~~~~~~~~~~~v~~~li~~i~~~~y~~~~~~~~~~~~  352 (501)
T 4b63_A          273 RTTLIMRDSAMRPSDDSPFVNEIFNPERVDKFYSQSAAERQRSLLADKATNYSVVRLELIEEIYNDMYLQRVKNPDETQW  352 (501)
T ss_dssp             EEEEECSSSSCCBCCCCTTGGGGGSTTHHHHHHTSCHHHHHHHHHHTGGGTSSCBCHHHHHHHHHHHHHHHHHCSCGGGC
T ss_pred             eEEEEeCCCccccccccccchhhcCHHHHHHHHhCCHHHHHHHHHHHHhhhhcccCHHHHHHHHHHHHhhccCCCccccc
Confidence            99999998765110               00                           000        0000     01


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEe-------ccCCceEEEecCeEEEeeCCCCChh-hhc---ccccccCCCcee
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKN-------LVTGQVSDLKVSGLFFAIGHEPATK-FVD---GQLDLHSDGYII  323 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~-------~~~~~~~~~~~D~vi~~~G~~p~~~-~~~---~~~~~~~~g~i~  323 (382)
                      ...+..+..+..+........+ .+.+..       ...+++.++++|.||+|||++++.+ ++.   ..+..+..|.+.
T Consensus       353 ~~~l~~~~~v~~~~~~~~~~~~-~v~~~~~~~~~~~v~~~dg~~~~~D~VI~ATGy~~~~p~~L~~~~~~l~~d~~g~~~  431 (501)
T 4b63_A          353 QHRILPERKITRVEHHGPQSRM-RIHLKSSKPESEGAANDVKETLEVDALMVATGYNRNAHERLLSKVQHLRPTGQDQWK  431 (501)
T ss_dssp             SSEEECSEEEEEEECCSSSSCE-EEEEEESCC--------CCCEEEESEEEECCCEECCTHHHHTGGGGGGSSTTCCSCC
T ss_pred             ceeecCCcceeeeeecCCCCeE-EEEeeeeEEeCCeeEeCCCeEEECCEEEECcCCCCCCcchhcchhhhcCcCcCCCee
Confidence            1245555666666554321101 122111       1123446799999999999998764 222   245567778888


Q ss_pred             eCCCCCcC-------CCCceEEecccCC---c-hhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          324 TKPGTTHT-------SVPGVFAAGDVQD---K-KYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       324 vd~~~~~t-------~~~~vya~GD~~~---~-~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      |+.++...       ..++||+-|-+-.   . .+-....|.+.|.++..-..+.+-
T Consensus       432 v~rdy~~~~~~~~~~~~~~i~~qg~~~~thG~~~~~Ls~~a~R~~~I~~~l~g~~~~  488 (501)
T 4b63_A          432 PHRDYRVEMDPSKVSSEAGIWLQGCNERTHGLSDSLLSVLAVRGGEMVQSIFGEQLE  488 (501)
T ss_dssp             BCTTSBBCCCTTTBCTTCEEEECSCCHHHHCTTTTSSTTHHHHHHHHHHHHHHHHHH
T ss_pred             eCCCcEEeecCCccCCCceEEecCCCcccCCcchhhHHHHHHHHHHHHHHHhcchhh
Confidence            88744321       2467999985421   0 122233455555544333333333

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.86  E-value=7.6e-21  Score=159.40  Aligned_cols=155  Identities=25%  Similarity=0.249  Sum_probs=124.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----------------hH---HHHHHhccCCCcEEEcCceeEEE
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----------------SK---IMQNRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----------------~~---~~~~~~l~~~gv~~~~~~~v~~i  267 (382)
                      +++|||+|++|+++|..|.+.|.+|+++++.+....                ..   ....+.+++.|++++.+ ++.++
T Consensus         3 ~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~~~-~v~~i   81 (180)
T 2ywl_A            3 DVIVVGGGPSGLSAALFLARAGLKVLVLDGGRSKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVRPG-VVKGV   81 (180)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEEEC-CCCEE
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEEeC-EEEEE
Confidence            699999999999999999999999999998764321                11   22234566789999999 99999


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchh
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKY  347 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~  347 (382)
                      +.++++     +.+..   .++ ++++|.+|+|+|.+|+..- ..++.++ +|++.||+ .++|+.|+|||+|||+..+.
T Consensus        82 ~~~~~~-----~~v~~---~~g-~i~ad~vI~A~G~~~~~~~-~~g~~~~-~g~i~vd~-~~~t~~~~i~a~GD~~~~~~  149 (180)
T 2ywl_A           82 RDMGGV-----FEVET---EEG-VEKAERLLLCTHKDPTLPS-LLGLTRR-GAYIDTDE-GGRTSYPRVYAAGVARGKVP  149 (180)
T ss_dssp             EECSSS-----EEEEC---SSC-EEEEEEEEECCTTCCHHHH-HHTCCEE-TTEECCCT-TCBCSSTTEEECGGGGTCCS
T ss_pred             EEcCCE-----EEEEE---CCC-EEEECEEEECCCCCCCccc-cCCCCcc-CceEEeCC-CCCcCCCCEEEeecccCcch
Confidence            987654     44443   223 7999999999999986421 2367777 89999998 78899999999999998654


Q ss_pred             hHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          348 RQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       348 ~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      +++..|+.+|+.+|.+|...+.++...
T Consensus       150 ~~~~~A~~~g~~aa~~i~~~~~~~~~~  176 (180)
T 2ywl_A          150 GHAIISAGDGAYVAVHLVSDLRGEPYK  176 (180)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred             hhHHHHHHhHHHHHHHHHHHhhhcccc
Confidence            588999999999999999999876543

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.72  E-value=1.1e-17  Score=157.50  Aligned_cols=113  Identities=22%  Similarity=0.287  Sum_probs=83.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCC--------cceecCC--Cc--ccCC--------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPG--------GQLTTTS--DV--ENFP--------------  111 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~g--------g~~~~~~--~~--~~~~--------------  111 (382)
                      .+||+|||||++|+++|+.|++.|.+|+|+|+.    ..+|        +.+....  ..  ..++              
T Consensus         4 ~~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~----~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~   79 (401)
T 2gqf_A            4 YSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNG----KKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYT   79 (401)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS----SSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhCCCCEEEEeCC----CCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCC
Confidence            589999999999999999999999999999953    2232        2221000  00  0000              


Q ss_pred             -----------C-----------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec----CCcEEEEECCeEEEcC
Q 016820          112 -----------G-----------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK----SRPFKVFTDSKSVLAD  164 (382)
Q Consensus       112 -----------~-----------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~----~~~~~v~~~~~~~~~d  164 (382)
                                 +           +|.. ...++.+.+.+.+++.|++++.+ +|+++..+    ++.+.+.++++++++|
T Consensus        80 ~~~~~~~~~~~Gi~~~~~~~g~~~p~~-~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad  158 (401)
T 2gqf_A           80 NWDFISLVAEQGITYHEKELGQLFCDE-GAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCK  158 (401)
T ss_dssp             HHHHHHHHHHTTCCEEECSTTEEEETT-CTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEES
T ss_pred             HHHHHHHHHhCCCceEECcCCEEccCC-CHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECC
Confidence                       0           0111 46778888999999999999988 69899866    5668888877789999


Q ss_pred             EEEEccCCCCc
Q 016820          165 TVIVATGAVAK  175 (382)
Q Consensus       165 ~lvlA~G~~~~  175 (382)
                      +||+|+|..+.
T Consensus       159 ~VVlAtG~~s~  169 (401)
T 2gqf_A          159 NLIVATGGLSM  169 (401)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999999873

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=99.70  E-value=1.8e-18  Score=166.56  Aligned_cols=279  Identities=17%  Similarity=0.209  Sum_probs=155.0

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceecCC--C----------------------------
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTTTS--D----------------------------  106 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~~~--~----------------------------  106 (382)
                      ||+|||||++|+++|..|++.|.+|+|+|+....+.   ..|+......  +                            
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~~~~g~s~~a~Ggi~~~~~~~d~~~~~~~d~l~~g~~~~d~~~v~~~~~~   80 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKRIDGGSTPIAKGGVAASVGSDDSPELHAQDTIRVGDGLCDVKTVNYVTSE   80 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSTTCSSGGGCCSCEECCCSTTCCHHHHHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCchHHHHhCCeEEeCCCCCCHHHHHHHHHHhcCCcCCHHHHHHHHHH
Confidence            799999999999999999999999999997411110   0011000000  0                            


Q ss_pred             ------------------cccCCCC--C-----CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE---EEEEC
Q 016820          107 ------------------VENFPGF--P-----QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF---KVFTD  157 (382)
Q Consensus       107 ------------------~~~~~~~--~-----~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~---~v~~~  157 (382)
                                        ....++.  +     ......++.+.+.+.+++.|++++.+ .| ++..+++.+   .+.++
T Consensus        81 ~~~~i~~l~~~Gv~~~~~~~~~~g~~~~r~~~~~d~~g~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~  159 (472)
T 2e5v_A           81 AKNVIETFESWGFEFEEDLRLEGGHTKRRVLHRTDETGREIFNFLLKLAREEGIPIIEDRLV-EIRVKDGKVTGFVTEKR  159 (472)
T ss_dssp             HHHHHHHHHHTTCCCCSSCBCCTTCSSCCEECSSSCHHHHHHHHHHHHHHHTTCCEECCCEE-EEEEETTEEEEEEETTT
T ss_pred             HHHHHHHHHHcCCCCCcccccccCcCcCcEEEeCCCCHHHHHHHHHHHHHhCCCEEEECcEE-EEEEeCCEEEEEEEEeC
Confidence                              0000000  0     01234677888888888889999998 58 987766654   23224


Q ss_pred             CeEEEcCEEEEccCCCCcCCCCCCCc-cccCCCccee-----eeccCCCCCCCCC-cEEEEcCCchHHHHHHHHhhcCCE
Q 016820          158 SKSVLADTVIVATGAVAKKLQFPGSD-AFWNRGISAC-----AVCDGAAPIFRDK-PLAVIGGGDSAMEEANFLTKYGSK  230 (382)
Q Consensus       158 ~~~~~~d~lvlA~G~~~~~~~~~g~~-~~~~~~~~~~-----~~~~~~~~~~~~~-~v~VvG~G~~a~e~a~~l~~~g~~  230 (382)
                      ++++.+|.||+|||..+..+.++... ...+..+..+     ...+..  ..... .++++|+|  +++++..+...|..
T Consensus       160 ~g~~~a~~VVlAtGg~~~~~~~~~~~~~~tGdgi~~a~~aGa~~~d~e--~~q~~p~~~~~ggg--~~~~ae~~~~~G~~  235 (472)
T 2e5v_A          160 GLVEDVDKLVLATGGYSYLYEYSSTQSTNIGDGMAIAFKAGTILADME--FVQFHPTVTSLDGE--VFLLTETLRGEGAQ  235 (472)
T ss_dssp             EEECCCSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHHTTCCEECTT--CEEEEEEEECGGGC--CEECCTHHHHTTCE
T ss_pred             CCeEEeeeEEECCCCCcccCccccCCCCCchHHHHHHHHcCCCEeCCc--ceEEEeEEEccCCC--ceeeehhhcCCceE
Confidence            45688999999999988766543221 1112211111     011111  11111 23445665  67777777777877


Q ss_pred             EEEEEeCCCCcc--------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe-cC
Q 016820          231 VYIIHRRDSFRA--------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK-VS  295 (382)
Q Consensus       231 v~~~~~~~~~~~--------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~-~D  295 (382)
                      + +..+.+++..              +..+.++ +++.+. ++.+.       ..    +..  +       ...++ .|
T Consensus       236 ~-v~~~g~rf~~~~~~~~el~~rd~v~~~i~~~-~~~~~~-v~ld~-------~~----~~~--~-------~~~~~~~~  292 (472)
T 2e5v_A          236 I-INENGERFLFNYDKRGELAPRDILSRAIYIE-MLKGHK-VFIDL-------SK----IED--F-------ERKFPVVA  292 (472)
T ss_dssp             E-EETTCCCGGGGTCTTGGGSCHHHHHHHHHHH-HHHTCC-EEEEC-------TT----CTT--H-------HHHCHHHH
T ss_pred             E-ECCCCCCCCccCCcccCcCchhHHHHHHHHH-HHhCCc-EEEec-------cc----hHH--H-------HHHhHHHH
Confidence            7 6666666631              1122222 222221 21111       00    000  0       01233 46


Q ss_pred             eEEEeeCCCCChhhhcc-cccccCCCceeeCCCCCcCCCCceEEecccCC-ch---hhHHHHHHhhHHHHHHHHHHHH
Q 016820          296 GLFFAIGHEPATKFVDG-QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD-KK---YRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       296 ~vi~~~G~~p~~~~~~~-~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~-~~---~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      .++...|..|+ ..+.. .......|+|.||+ .++|+.|+|||+|||++ ..   .+.+..+..++...++.+.+.+
T Consensus       293 ~~~~~~G~dp~-~~i~v~p~~~~~~GGI~vd~-~~~t~ipgLyAaGd~a~~~~hg~~rl~~~sl~~~~v~G~~a~~~~  368 (472)
T 2e5v_A          293 KYLARHGHNYK-VKIPIFPAAHFVDGGIRVNI-RGESNIVNLYAIGEVSDSGLHGANRLASNSLLEGLVFGINLPRYV  368 (472)
T ss_dssp             HHHHHTTCCTT-SCEECEEEEEEESCEEECCT-TCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHGGGTT
T ss_pred             HHHHHhCcCcc-cceEeehhhceeCCCeEECC-CCccccCCEEecchhcccccCCCCCCCcccHHHHHHHHHHHHHHH
Confidence            66777899998 54441 12233479999999 78999999999999976 21   1334444444444444444443

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=99.69  E-value=2.1e-16  Score=137.80  Aligned_cols=116  Identities=18%  Similarity=0.185  Sum_probs=82.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCC-----------CCCChHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP-----------QGILGGDLMDRC  126 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~  126 (382)
                      .+||+|||||++|+++|..|+++|.+|+|||+..   ...|  +...   ..+..+.           .+....++.+++
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~---~~~G--~~~~---~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l   74 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL---DAVM--MPFL---PPKPPFPPGSLLERAYDPKDERVWAFHARA   74 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG---GGTT--CCSS---CCCSCCCTTCHHHHHCCTTCCCHHHHHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC---CcCC--cccC---ccccccchhhHHhhhccCCCCCHHHHHHHH
Confidence            5899999999999999999999999999999631   1222  1110   0011110           011345778888


Q ss_pred             HHHHHHc-CcEEEEeeEEEEEecCCcE-EEEECC-eEEEcCEEEEccCCCCcCCCCCC
Q 016820          127 RNQSLRF-GTQIFTETVSKVDFKSRPF-KVFTDS-KSVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       127 ~~~~~~~-gi~~~~~~v~~i~~~~~~~-~v~~~~-~~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      .+.+++. |++++..+|+++..+++.+ .+.+++ .++++|+||+|+|..+.....+|
T Consensus        75 ~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G  132 (232)
T 2cul_A           75 KYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLG  132 (232)
T ss_dssp             HHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEET
T ss_pred             HHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecC
Confidence            8888887 9999876899998776654 455544 47999999999999765443333

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=99.58  E-value=2.8e-14  Score=119.14  Aligned_cols=111  Identities=26%  Similarity=0.415  Sum_probs=91.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF  138 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  138 (382)
                      +||+|||||++|+++|..|++.|.+|+|+|+..       +.+........++++|......++.+++.+.+++.|++++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~v~   74 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR-------SKVKGVSRVPNYPGLLDEPSGEELLRRLEAHARRYGAEVR   74 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC-------CTTTTCSCCCCSTTCTTCCCHHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC-------CcccCchhhhccCCCcCCCCHHHHHHHHHHHHHHcCCEEE
Confidence            689999999999999999999999999999532       1111122334456666667789999999999999999999


Q ss_pred             EeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcC
Q 016820          139 TETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       139 ~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~  176 (382)
                      .++|++++.+++.+.+.++++++.+|.||+|+|.+|+.
T Consensus        75 ~~~v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~~~~  112 (180)
T 2ywl_A           75 PGVVKGVRDMGGVFEVETEEGVEKAERLLLCTHKDPTL  112 (180)
T ss_dssp             ECCCCEEEECSSSEEEECSSCEEEEEEEEECCTTCCHH
T ss_pred             eCEEEEEEEcCCEEEEEECCCEEEECEEEECCCCCCCc
Confidence            88999998877778887766689999999999999854

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=99.57  E-value=1.5e-13  Score=134.60  Aligned_cols=158  Identities=20%  Similarity=0.183  Sum_probs=102.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC--CC----CCCCccee--cCCCcccCCC----------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA--ND----IAPGGQLT--TTSDVENFPG----------------  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~--~~----~~~gg~~~--~~~~~~~~~~----------------  112 (382)
                      ..+||+|||||+||+++|..|++.|.+|+|||+...  ..    ...|+...  .......+.+                
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l  106 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRIL  106 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhh
Confidence            458999999999999999999999999999996421  00    00011000  0000000000                


Q ss_pred             ----CC------CCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcE-EEEEC-CeEEEcCEEEEccCCCCcCCCC
Q 016820          113 ----FP------QGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPF-KVFTD-SKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       113 ----~~------~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~-~v~~~-~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                          .+      .......+...+.+.+++ .|++++.++|+++..+++.+ .|.+. +..+.+|.||+|||..+..+.+
T Consensus       107 ~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V~GV~t~dG~~I~Ad~VVLATGt~s~~~~i  186 (651)
T 3ces_A          107 NASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIH  186 (651)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBEEEEEETTSEEEEEEEEEECCSTTTCCEEE
T ss_pred             hcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEEEEEEECCCCEEECCEEEEcCCCCccCccc
Confidence                00      012345677888888887 69999777899998766654 45554 4569999999999999887777


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEe
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR  236 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~  236 (382)
                      +|...+                  .+.+   +| |.++++++..|.+.|.+|+.+..
T Consensus       187 ~G~~~~------------------~~gr---iG-g~~a~eLA~~L~~lG~~v~~~~t  221 (651)
T 3ces_A          187 IGLDNY------------------SGGR---AG-DPPSIPLSRRLRELPLRVGRLKT  221 (651)
T ss_dssp             CC-----------------------------------CCHHHHHHHTTTCCEEEECC
T ss_pred             cCcccC------------------CCCC---cc-chhhhHHHHHHHhcCCeEEEecC
Confidence            776531                  0122   56 78899999999999999988853

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=99.53  E-value=4e-13  Score=131.12  Aligned_cols=159  Identities=18%  Similarity=0.181  Sum_probs=106.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC--CC----CCCCcc----ee-----cCCCc--------ccC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA--ND----IAPGGQ----LT-----TTSDV--------ENF---  110 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~--~~----~~~gg~----~~-----~~~~~--------~~~---  110 (382)
                      ..+||+|||||+||++||..|++.|.+|+|||+...  ..    ...|+.    +.     ....+        ..+   
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l  105 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKML  105 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeec
Confidence            358999999999999999999999999999996421  00    000110    00     00000        000   


Q ss_pred             -----CCCC---CCCChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCcE-EEEEC-CeEEEcCEEEEccCCCCcCCCC
Q 016820          111 -----PGFP---QGILGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRPF-KVFTD-SKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       111 -----~~~~---~~~~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~~-~v~~~-~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                           +...   .......+.+.+.+.+++ .|++++..+|+++..+++.+ .|.+. +..+.++.||+|||..++.+.+
T Consensus       106 ~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V~GV~t~dG~~i~AdaVVLATG~~s~~~~~  185 (637)
T 2zxi_A          106 NTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIY  185 (637)
T ss_dssp             STTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBEEEEEETTSCEEECSEEEECCTTCBTCEEE
T ss_pred             ccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEEEEEEECCCcEEEeCEEEEccCCCccCcee
Confidence                 0000   012446778888888887 59999777899998776654 35554 4579999999999999888777


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      +|...+.                  ..+   + |+..+++++..|.+.|.++..+.+.
T Consensus       186 ~G~~~~~------------------~Gr---~-G~~~A~~la~~L~~lG~~v~~l~tg  221 (637)
T 2zxi_A          186 IGDKMIP------------------GGR---L-GEPRSEGLSDFYRRFDFPLIRFKTG  221 (637)
T ss_dssp             ETTEEEE------------------CSB---T-TBCCBCTHHHHHHHTTCCCEEEEEE
T ss_pred             ccceecC------------------CCC---C-CchhHHHHHHHHHhcCCceEEecCC
Confidence            7764321                  111   2 3667899999999999887766543

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=99.45  E-value=9.2e-13  Score=129.02  Aligned_cols=159  Identities=21%  Similarity=0.210  Sum_probs=103.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC--CC----CCCCcc----ee-----cCCCc--------ccC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA--ND----IAPGGQ----LT-----TTSDV--------ENF---  110 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~--~~----~~~gg~----~~-----~~~~~--------~~~---  110 (382)
                      ..+||+|||||+||+++|..|++.|.+|+|+|+...  ..    ...|+.    +.     .....        ..|   
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l   99 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRML   99 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEE
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhc
Confidence            458999999999999999999999999999996420  00    000100    00     00000        000   


Q ss_pred             -----CCCC---CCCChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCcEE-EEEC-CeEEEcCEEEEccCCCCcCCCC
Q 016820          111 -----PGFP---QGILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRPFK-VFTD-SKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       111 -----~~~~---~~~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~~~-v~~~-~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                           +...   .......+...+.+.+++. |++++.++|.++..+++.+. +.+. +..+.+|.||+|||.+++.+.+
T Consensus       100 ~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V~GV~t~~G~~i~Ad~VVLATG~~s~~~i~  179 (641)
T 3cp8_A          100 NRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIH  179 (641)
T ss_dssp             CSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCEEEEEEEEECCTTCBTCEEE
T ss_pred             ccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEEEEEEECCCcEEEeCEEEECcCCCCCccce
Confidence                 0000   0134457888888888875 99998778999887777654 5553 4579999999999998876544


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEe
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR  236 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~  236 (382)
                      +|...+.                  ..+++   |+..+++++..|.+.|.+|..+..
T Consensus       180 ~G~~~~~------------------~g~~v---G~~~a~~la~~L~~~G~kv~~l~t  215 (641)
T 3cp8_A          180 IGMDHFP------------------GGRST---AEPPVEGLTESLASLGFSFGRLKT  215 (641)
T ss_dssp             ETTEEEE------------------CSSST---TSCCBCSHHHHHHHTTCCEEEEEE
T ss_pred             eeeeeec------------------ccccc---CCchhhhhHHHHHhCCceEEeecC
Confidence            4433210                  01111   357788999999999998876644

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.34  E-value=6.9e-12  Score=118.42  Aligned_cols=116  Identities=26%  Similarity=0.328  Sum_probs=84.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------eecCC---Cccc----CCCC-------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------LTTTS---DVEN----FPGF-------  113 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------~~~~~---~~~~----~~~~-------  113 (382)
                      +..+||+|||||++|+++|+.|++.|++|+|+|+.    ..+|+.        +....   ....    .+.+       
T Consensus        25 ~~~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~----~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~  100 (417)
T 3v76_A           25 AEKQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHA----RAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALAR  100 (417)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHHTTCCEEEECSS----SSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC----CCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHh
Confidence            34689999999999999999999999999999953    333322        11110   0000    0000       


Q ss_pred             ---------------C----------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEE
Q 016820          114 ---------------P----------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVI  167 (382)
Q Consensus       114 ---------------~----------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lv  167 (382)
                                     +          ......++.+.+.+.+++.|++++.+ +|+++..+++.+.+.++++++++|+||
T Consensus       101 ~~~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VI  180 (417)
T 3v76_A          101 YRPQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLV  180 (417)
T ss_dssp             SCHHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEE
T ss_pred             cCHHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEE
Confidence                           0          01244678888888899999999998 799999888888898888899999999


Q ss_pred             EccCCCCc
Q 016820          168 VATGAVAK  175 (382)
Q Consensus       168 lA~G~~~~  175 (382)
                      +|+|..+.
T Consensus       181 lAtG~~S~  188 (417)
T 3v76_A          181 VASGGKSI  188 (417)
T ss_dssp             ECCCCSSC
T ss_pred             ECCCCccC
Confidence            99999863

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=99.21  E-value=3.5e-11  Score=116.99  Aligned_cols=129  Identities=12%  Similarity=0.006  Sum_probs=98.3

Q ss_pred             cccccccccccccccc--CCCCCCCcccccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC
Q 016820           27 IVTTSSAAAAASFSAT--TAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT  104 (382)
Q Consensus        27 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~  104 (382)
                      ++||+.+..|+.....  ...+++.... .+..+.+++|||||+.|+++|..++++|.+|+|+++.              
T Consensus       191 IATGs~P~~P~~~~~~~~~~~ts~~~l~-l~~lP~~lvIIGgG~IGlE~A~~~~~lG~~VTii~~~--------------  255 (542)
T 4b1b_A          191 IATGCRPHIPDDVEGAKELSITSDDIFS-LKKDPGKTLVVGASYVALECSGFLNSLGYDVTVAVRS--------------  255 (542)
T ss_dssp             ECCCEEECCCSSSBTHHHHCBCHHHHTT-CSSCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEESS--------------
T ss_pred             eccCCCCCCCCcccCCCccccCchhhhc-cccCCceEEEECCCHHHHHHHHHHHhcCCeEEEeccc--------------
Confidence            6799888766544433  2233333222 3346789999999999999999999999999999831              


Q ss_pred             CCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820          105 SDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~  178 (382)
                         ..+     ....+++.+.+++.+++.|++++.+ .+..+...++.+.+... +..+.+|.|++|+|.+|+...
T Consensus       256 ---~~L-----~~~D~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~Pnt~~  323 (542)
T 4b1b_A          256 ---IVL-----RGFDQQCAVKVKLYMEEQGVMFKNGILPKKLTKMDDKILVEFSDKTSELYDTVLYAIGRKGDIDG  323 (542)
T ss_dssp             ---CSS-----TTSCHHHHHHHHHHHHHTTCEEEETCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEESCGG
T ss_pred             ---ccc-----cccchhHHHHHHHHHHhhcceeecceEEEEEEecCCeEEEEEcCCCeEEEEEEEEcccccCCccc
Confidence               011     1235788999999999999999999 68899888888777664 456889999999999998764

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.17  E-value=1.6e-10  Score=109.50  Aligned_cols=121  Identities=21%  Similarity=0.236  Sum_probs=84.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC------------------------------CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT------------------------------SD  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~------------------------------~~  106 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+........|..+...                              ..
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~   83 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKE   83 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTE
T ss_pred             ccCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCe
Confidence            358999999999999999999999999999997432111222211000                              00


Q ss_pred             cc--cC-------CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE--EEEECCe---EEEcCEEEEccC
Q 016820          107 VE--NF-------PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF--KVFTDSK---SVLADTVIVATG  171 (382)
Q Consensus       107 ~~--~~-------~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~--~v~~~~~---~~~~d~lvlA~G  171 (382)
                      ..  .+       ......+....+...+.+.+.+.|++++.+ +|++++.+++.+  .+.++++   ++++|.||.|+|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G  163 (421)
T 3nix_A           84 IADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASG  163 (421)
T ss_dssp             EEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCG
T ss_pred             eEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence            00  00       011113567788899999999999999998 799998876654  4444443   499999999999


Q ss_pred             CCCcCC
Q 016820          172 AVAKKL  177 (382)
Q Consensus       172 ~~~~~~  177 (382)
                      ..+...
T Consensus       164 ~~s~l~  169 (421)
T 3nix_A          164 YGRVIP  169 (421)
T ss_dssp             GGCHHH
T ss_pred             CchhhH
Confidence            876443

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.15  E-value=2.4e-10  Score=112.21  Aligned_cols=120  Identities=15%  Similarity=0.129  Sum_probs=83.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCc----------------------------c-eec---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGG----------------------------Q-LTT---  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg----------------------------~-~~~---  103 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||+....... .+.                            . +..   
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~  127 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFT  127 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccc
Confidence            4589999999999999999999999999999974221100 000                            0 000   


Q ss_pred             -CCCcccCC-C--CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE--CCe--EEEcCEEEEccCCCC
Q 016820          104 -TSDVENFP-G--FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT--DSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       104 -~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~--~~~--~~~~d~lvlA~G~~~  174 (382)
                       ......+. .  +...+....+.+.+.+.+.+.|++++.+ +|++++.+++.+.+..  .++  ++++|+||.|+|.++
T Consensus       128 ~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          128 QGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             TCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             ccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence             00000000 0  1123567888899999998899999888 7999988888877766  444  699999999999976


Q ss_pred             cC
Q 016820          175 KK  176 (382)
Q Consensus       175 ~~  176 (382)
                      ..
T Consensus       208 ~v  209 (570)
T 3fmw_A          208 TV  209 (570)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.15  E-value=4.1e-10  Score=100.86  Aligned_cols=118  Identities=17%  Similarity=0.204  Sum_probs=78.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcceecCCCc-ccC------------CCCCC------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQLTTTSDV-ENF------------PGFPQ------  115 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~~~~-~~~------------~~~~~------  115 (382)
                      ...+||+|||||++|+++|..|++. |.+|+|+|+.    ..+|+........ ..+            .+.+.      
T Consensus        37 ~~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~----~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~  112 (284)
T 1rp0_A           37 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQS----VSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTY  112 (284)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESS----SSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSE
T ss_pred             ccccCEEEECccHHHHHHHHHHHHcCCCeEEEEECC----CCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCE
Confidence            3468999999999999999999997 9999999963    2222211100000 000            00110      


Q ss_pred             --CCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecCCcE-EEEE----------CC-----eEEEcCEEEEccCCCCc
Q 016820          116 --GILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKSRPF-KVFT----------DS-----KSVLADTVIVATGAVAK  175 (382)
Q Consensus       116 --~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~~~~-~v~~----------~~-----~~~~~d~lvlA~G~~~~  175 (382)
                        .....++...+.+.+.+ .|++++.+ +|+++..+++.+ .+..          ++     .++++|.||+|+|..+.
T Consensus       113 ~~~~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~  192 (284)
T 1rp0_A          113 VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  192 (284)
T ss_dssp             EEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             EEecCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchH
Confidence              11446677777776665 69999998 799998776643 2222          11     56999999999999876


Q ss_pred             CC
Q 016820          176 KL  177 (382)
Q Consensus       176 ~~  177 (382)
                      ..
T Consensus       193 ~~  194 (284)
T 1rp0_A          193 FG  194 (284)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=99.14  E-value=2.2e-10  Score=110.88  Aligned_cols=121  Identities=19%  Similarity=0.114  Sum_probs=83.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec-CCC--------------cccCCC-CCCCCChH
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT-TSD--------------VENFPG-FPQGILGG  120 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~-~~~--------------~~~~~~-~~~~~~~~  120 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+.    ...|+.... ...              ...+.. ....+...
T Consensus        91 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~----~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~  166 (497)
T 2bry_A           91 TNTKCLVVGAGPCGLRAAVELALLGARVVLVEKR----IKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIR  166 (497)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC----SSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCeEEEEEec----cccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHH
Confidence            4689999999999999999999999999999953    222221000 000              000000 00113447


Q ss_pred             HHHHHHHHHHHHcCcEEEEe-eEEEEEec---CCcEEEEE--C-Ce---EEEcCEEEEccCCCCcCCCCCC
Q 016820          121 DLMDRCRNQSLRFGTQIFTE-TVSKVDFK---SRPFKVFT--D-SK---SVLADTVIVATGAVAKKLQFPG  181 (382)
Q Consensus       121 ~~~~~~~~~~~~~gi~~~~~-~v~~i~~~---~~~~~v~~--~-~~---~~~~d~lvlA~G~~~~~~~~~g  181 (382)
                      ++.+.+.+.+++.|++++.+ +|+++..+   ++.+.+.+  . ++   ++++|+||+|+|..+....+.+
T Consensus       167 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~r~~~~  237 (497)
T 2bry_A          167 QLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKFVPEGFTI  237 (497)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTCCCTTCEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCcccccccc
Confidence            88888988888899999998 79999864   34566655  2 33   5899999999999887654433

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.13  E-value=2.3e-10  Score=107.14  Aligned_cols=120  Identities=21%  Similarity=0.202  Sum_probs=81.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--CCCCCcceecC--------CCc-----------ccCCC---
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--DIAPGGQLTTT--------SDV-----------ENFPG---  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--~~~~gg~~~~~--------~~~-----------~~~~~---  112 (382)
                      ..+||+||||||+|+++|+.|++.|++|+|+|+....  ...+|+.+...        ...           ...+.   
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~   82 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKR   82 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCce
Confidence            4599999999999999999999999999999974321  12223322100        000           00000   


Q ss_pred             ------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEE---EECC--eEEEcCEEEEccCCCC
Q 016820          113 ------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKV---FTDS--KSVLADTVIVATGAVA  174 (382)
Q Consensus       113 ------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v---~~~~--~~~~~d~lvlA~G~~~  174 (382)
                                  ....+....+...+.+.+.+.|++++.+ +++++..+++.+..   ..++  .++++|.||.|.|..+
T Consensus        83 ~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~~~G~~~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A           83 PIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             CEEEECSSSSCCCEEEECHHHHHHHHHHHHHHHTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             EeeccccccCCceeEEEEHHHHHHHHHHHHHhcCcEEeeeeeeeeeeeccceeeeeeecccccceEEEEeEEEeCCcccc
Confidence                        0012356788888999999999999988 68888777765432   2233  3489999999999876


Q ss_pred             cC
Q 016820          175 KK  176 (382)
Q Consensus       175 ~~  176 (382)
                      ..
T Consensus       163 ~v  164 (397)
T 3oz2_A          163 EF  164 (397)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.13  E-value=1.6e-10  Score=103.63  Aligned_cols=165  Identities=15%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCCc----------------------------------------chH
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSFR----------------------------------------ASK  244 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~~----------------------------------------~~~  244 (382)
                      .+|+|||+|.+|+.+|..|.+. |.+|+++++.+.+.                                        ...
T Consensus        40 ~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~  119 (284)
T 1rp0_A           40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHAA  119 (284)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCHH
T ss_pred             cCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCCCcccCCCEEEecCHH
Confidence            4799999999999999999997 99999999876431                                        111


Q ss_pred             ----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec---------cCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          245 ----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL---------VTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       245 ----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~---------~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                          .+.++..++.|++++.++.+.++..+++.  +.++.+...         ..++...+.+|.+|+|+|..+......
T Consensus       120 ~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~--v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~~~~~  197 (284)
T 1rp0_A          120 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR--VGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPFGATG  197 (284)
T ss_dssp             HHHHHHHHHHHTSTTEEEEETEEEEEEEEETTE--EEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTTTTHH
T ss_pred             HHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCe--EEEEEEeccccccccCccccCceEEEECCEEEECCCCchHHHHHH
Confidence                23333344579999999999999876542  445666421         012236799999999999887654322


Q ss_pred             ------cc--ccccCCCceeeCC------CCCcCCCCceEEecccCCc------hhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          312 ------GQ--LDLHSDGYIITKP------GTTHTSVPGVFAAGDVQDK------KYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       312 ------~~--~~~~~~g~i~vd~------~~~~t~~~~vya~GD~~~~------~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                            .+  +.+.....+.++.      ....+..|++|++||+...      ..+....+..+|+.+|.+|.++|...
T Consensus       198 ~~~~~~~g~~~~v~~~~g~~~~~~~~~~v~~~~~~~p~i~a~G~~~~~~~g~~~~gp~~~~~~~sG~~~a~~i~~~l~~~  277 (284)
T 1rp0_A          198 VKRLKSIGMIDHVPGMKALDMNTAEDAIVRLTREVVPGMIVTGMEVAEIDGAPRMGPTFGAMMISGQKAGQLALKALGLP  277 (284)
T ss_dssp             HHHHHHTTSSSCCCCCEEECHHHHHHHHHHHCEEEETTEEECTHHHHHHHTCEECCSCCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhhhccCCCCcCCcCCchhhhhhHHHhhccccccCCEEEEeeehhhhcCCCCcChHHHHHHHhHHHHHHHHHHHhhhh
Confidence                  01  1122222333331      0124567999999998631      11235678899999999999998644


Q ss_pred             c
Q 016820          372 G  372 (382)
Q Consensus       372 ~  372 (382)
                      +
T Consensus       278 ~  278 (284)
T 1rp0_A          278 N  278 (284)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.13  E-value=2.4e-10  Score=107.57  Aligned_cols=120  Identities=15%  Similarity=0.090  Sum_probs=84.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC-CCCccee-----------------------------cC-C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI-APGGQLT-----------------------------TT-S  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~-~~gg~~~-----------------------------~~-~  105 (382)
                      .++||+|||||++|+++|..|++.|++|+|+|+...... ..+..+.                             .. .
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g   84 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDG   84 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCC
Confidence            458999999999999999999999999999997422110 0111000                             00 0


Q ss_pred             -CcccCC-------CCCCCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecCCcE--EEEECC-eEEEcCEEEEccCC
Q 016820          106 -DVENFP-------GFPQGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKSRPF--KVFTDS-KSVLADTVIVATGA  172 (382)
Q Consensus       106 -~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~~~~--~v~~~~-~~~~~d~lvlA~G~  172 (382)
                       ....++       .+...+...++.+.+.+.+.+. |++++.+ +|++++.+++.+  .+.+.+ .++++|.||.|+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG~  164 (399)
T 2x3n_A           85 ELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADGI  164 (399)
T ss_dssp             EEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCCT
T ss_pred             CEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCCC
Confidence             000000       0011356678899999999888 9999988 799999887777  777654 47999999999999


Q ss_pred             CCcC
Q 016820          173 VAKK  176 (382)
Q Consensus       173 ~~~~  176 (382)
                      ++..
T Consensus       165 ~s~v  168 (399)
T 2x3n_A          165 ASYV  168 (399)
T ss_dssp             TCHH
T ss_pred             ChHH
Confidence            7653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.12  E-value=2.3e-10  Score=109.37  Aligned_cols=114  Identities=23%  Similarity=0.375  Sum_probs=81.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------eecCC--Cc----ccCC-----------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------LTTTS--DV----ENFP-----------  111 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------~~~~~--~~----~~~~-----------  111 (382)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|+..    .+|+.        +....  ..    ..++           
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~----~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGN----KLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFS  100 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS----SSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHH
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCCEEEEECCC----CCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHH
Confidence            45899999999999999999999999999999632    22221        10000  00    0000           


Q ss_pred             --------------C-----------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCe-EEEc
Q 016820          112 --------------G-----------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSK-SVLA  163 (382)
Q Consensus       112 --------------~-----------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~-~~~~  163 (382)
                                    +           +|.......+.+.+.+.+++.|++++.+ +|+++..+++. +.+.++++ ++++
T Consensus       101 ~~~~~~~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~A  180 (447)
T 2i0z_A          101 IFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET  180 (447)
T ss_dssp             HSCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred             hcCHHHHHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEEC
Confidence                          0           0111134678888888888999999988 69999876665 66776555 4999


Q ss_pred             CEEEEccCCCC
Q 016820          164 DTVIVATGAVA  174 (382)
Q Consensus       164 d~lvlA~G~~~  174 (382)
                      |.||+|+|..+
T Consensus       181 d~VVlAtGg~s  191 (447)
T 2i0z_A          181 NHVVIAVGGKS  191 (447)
T ss_dssp             SCEEECCCCSS
T ss_pred             CEEEECCCCCc
Confidence            99999999977

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.12  E-value=2.4e-10  Score=106.76  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=49.6

Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +...++.+.+.+.+.+.|++++.+ +|+++..+++.+.+.++++++.+|.||+|+|..+
T Consensus       161 ~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~s  219 (382)
T 1ryi_A          161 VEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWS  219 (382)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGGGT
T ss_pred             EcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCceEEcCEEEECCChhH
Confidence            345778888999999999999988 6999988877788887777899999999999864

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.11  E-value=9.7e-12  Score=118.29  Aligned_cols=90  Identities=13%  Similarity=0.090  Sum_probs=64.9

Q ss_pred             HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC--------CCCChhhhcc-cc
Q 016820          244 KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG--------HEPATKFVDG-QL  314 (382)
Q Consensus       244 ~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G--------~~p~~~~~~~-~~  314 (382)
                      ..+.+.++++.| +++++++|++|+.++++     +.+..   .++..+.+|.||+++|        +.|+.+.... .+
T Consensus       207 ~~l~~~~~~~~g-~i~~~~~V~~i~~~~~~-----v~v~~---~~g~~~~ad~vi~a~~~~~l~~i~~~p~l~~~~~~~~  277 (431)
T 3k7m_X          207 ADLVDAMSQEIP-EIRLQTVVTGIDQSGDV-----VNVTV---KDGHAFQAHSVIVATPMNTWRRIVFTPALPERRRSVI  277 (431)
T ss_dssp             HHHHHHHHTTCS-CEESSCCEEEEECSSSS-----EEEEE---TTSCCEEEEEEEECSCGGGGGGSEEESCCCHHHHHHH
T ss_pred             HHHHHHHHhhCC-ceEeCCEEEEEEEcCCe-----EEEEE---CCCCEEEeCEEEEecCcchHhheeeCCCCCHHHHHHH
Confidence            344556677778 99999999999987765     55554   2334699999999999        8887765441 22


Q ss_pred             c-ccCCCceeeCCCCCcCCCCceEEecccC
Q 016820          315 D-LHSDGYIITKPGTTHTSVPGVFAAGDVQ  343 (382)
Q Consensus       315 ~-~~~~g~i~vd~~~~~t~~~~vya~GD~~  343 (382)
                      . ......+.|+. .+++..+++|++||+.
T Consensus       278 ~~~~~~~~~kv~~-~~~~~~~~i~~~~d~~  306 (431)
T 3k7m_X          278 EEGHGGQGLKILI-HVRGAEAGIECVGDGI  306 (431)
T ss_dssp             HHCCCCCEEEEEE-EEESCCTTEEEEBSSS
T ss_pred             HhCCCcceEEEEE-EECCCCcCceEcCCCC
Confidence            2 12234578887 6778889999999984

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.10  E-value=7.7e-10  Score=107.54  Aligned_cols=121  Identities=20%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC-------------------------------C
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT-------------------------------S  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~-------------------------------~  105 (382)
                      .++||+|||||++|+++|+.|++.|++|+|||+........|..+...                               .
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~   85 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGK   85 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecC
Confidence            458999999999999999999999999999997532221222211000                               0


Q ss_pred             Cc----ccCC-------CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc---EEEEEC-C--eEEEcCEEE
Q 016820          106 DV----ENFP-------GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP---FKVFTD-S--KSVLADTVI  167 (382)
Q Consensus       106 ~~----~~~~-------~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~---~~v~~~-~--~~~~~d~lv  167 (382)
                      ..    ..+.       .....+....+.+.+.+.+.+.|++++.+ +|+++..+++.   +.+... +  .++++|.||
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI  165 (512)
T 3e1t_A           86 EPEPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIV  165 (512)
T ss_dssp             CSSCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEE
T ss_pred             CccccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEE
Confidence            00    0000       00112567788899999999999999988 79999887764   344443 3  269999999


Q ss_pred             EccCCCCcCC
Q 016820          168 VATGAVAKKL  177 (382)
Q Consensus       168 lA~G~~~~~~  177 (382)
                      .|+|.++...
T Consensus       166 ~AdG~~S~vr  175 (512)
T 3e1t_A          166 DASGNRTRVS  175 (512)
T ss_dssp             ECCCTTCSSG
T ss_pred             ECCCcchHHH
Confidence            9999987544

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.09  E-value=4.8e-10  Score=109.67  Aligned_cols=120  Identities=14%  Similarity=0.104  Sum_probs=84.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc-------------------------------e---e
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ-------------------------------L---T  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-------------------------------~---~  102 (382)
                      ..+||+|||||++|+++|+.|+++|++|+|||+.........+.                               +   .
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   83 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRL   83 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEE
T ss_pred             ccCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeE
Confidence            45899999999999999999999999999999743211100000                               0   0


Q ss_pred             c-C--C-Cc--------------cc-CCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC----cEEEEECC
Q 016820          103 T-T--S-DV--------------EN-FPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR----PFKVFTDS  158 (382)
Q Consensus       103 ~-~--~-~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~----~~~v~~~~  158 (382)
                      . .  . ..              .. .+.....+....+...+.+.+.+.|++++.+ +|+++..+++    .+.+...+
T Consensus        84 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~  163 (535)
T 3ihg_A           84 AESVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAG  163 (535)
T ss_dssp             ESSSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEE
T ss_pred             EeccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEc
Confidence            0 0  0 00              00 1111224567888999999999999999988 7999988877    77665533


Q ss_pred             ----eEEEcCEEEEccCCCCcC
Q 016820          159 ----KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       159 ----~~~~~d~lvlA~G~~~~~  176 (382)
                          .++++|+||.|+|.++..
T Consensus       164 ~~~~~~i~a~~vV~AdG~~S~v  185 (535)
T 3ihg_A          164 PDGEYDLRAGYLVGADGNRSLV  185 (535)
T ss_dssp             TTEEEEEEEEEEEECCCTTCHH
T ss_pred             CCCeEEEEeCEEEECCCCcchH
Confidence                569999999999998643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=99.07  E-value=5.9e-10  Score=106.76  Aligned_cols=101  Identities=18%  Similarity=0.169  Sum_probs=81.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||++|+++|..|++.|.+|+++|+..    .            .+|     ....++.+.+.+.+++.|++
T Consensus       166 ~~~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~----~------------~l~-----~~~~~~~~~l~~~l~~~Gv~  224 (455)
T 2yqu_A          166 VPKRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMD----R------------ILP-----TMDLEVSRAAERVFKKQGLT  224 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS----S------------SCT-----TSCHHHHHHHHHHHHHHTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEecCC----c------------ccc-----ccCHHHHHHHHHHHHHCCCE
Confidence            35789999999999999999999999999999410    0            011     13467888888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ +|.+++.+++.+.+.+ ++.++.+|.||+|+|.+|+.+.
T Consensus       225 i~~~~~V~~i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~~~~  268 (455)
T 2yqu_A          225 IRTGVRVTAVVPEAKGARVELEGGEVLEADRVLVAVGRRPYTEG  268 (455)
T ss_dssp             EECSCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCTT
T ss_pred             EEECCEEEEEEEeCCEEEEEECCCeEEEcCEEEECcCCCcCCCC
Confidence            9998 7999998777777765 4557999999999999988754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.07  E-value=4.5e-10  Score=105.95  Aligned_cols=120  Identities=15%  Similarity=0.141  Sum_probs=80.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee------------------------------cCC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT------------------------------TTS  105 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~------------------------------~~~  105 (382)
                      ..++||+|||||++|+++|+.|++.|++|+|||+.........+...                              ...
T Consensus        21 ~~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~  100 (407)
T 3rp8_A           21 QGHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFR  100 (407)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECC
Confidence            35689999999999999999999999999999974321111001000                              000


Q ss_pred             --C-cccC---------CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccC
Q 016820          106 --D-VENF---------PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATG  171 (382)
Q Consensus       106 --~-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G  171 (382)
                        . ...+         ......+....+.+.+.+.+.+  ++++.+ +|++++.+++.+.+.+.+ .++.+|.||.|+|
T Consensus       101 ~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~a~~vV~AdG  178 (407)
T 3rp8_A          101 SGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADGVTVWFTDGSSASGDLLIAADG  178 (407)
T ss_dssp             TCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCcEEEEEcCCCEEeeCEEEECCC
Confidence              0 0000         0111123556777888887766  778888 699999888888887754 5699999999999


Q ss_pred             CCCcCC
Q 016820          172 AVAKKL  177 (382)
Q Consensus       172 ~~~~~~  177 (382)
                      .++...
T Consensus       179 ~~S~vr  184 (407)
T 3rp8_A          179 SHSALR  184 (407)
T ss_dssp             TTCSSH
T ss_pred             cChHHH
Confidence            976543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.07  E-value=1e-09  Score=106.13  Aligned_cols=120  Identities=16%  Similarity=0.150  Sum_probs=83.7

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc-ee-----------------c--CCC---------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ-LT-----------------T--TSD---------  106 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-~~-----------------~--~~~---------  106 (382)
                      ...+||+|||||++|+++|..|++.|++|+|||+.........+. +.                 .  ...         
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   89 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPV   89 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceec
Confidence            356899999999999999999999999999999743221111110 00                 0  000         


Q ss_pred             -cccCC-CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe----EEEcCEEEEccCCCCc
Q 016820          107 -VENFP-GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK----SVLADTVIVATGAVAK  175 (382)
Q Consensus       107 -~~~~~-~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~----~~~~d~lvlA~G~~~~  175 (382)
                       ...+. .++  ..+....+.+.+.+.+.+.|++++.+ +|++++.+++.+++...++    ++++|+||.|.|.++.
T Consensus        90 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  167 (499)
T 2qa2_A           90 DFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRST  167 (499)
T ss_dssp             EGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTCH
T ss_pred             ccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCcccH
Confidence             00000 011  12345778888888888899999998 7999988888777765332    6999999999999764

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.06  E-value=7.7e-10  Score=108.91  Aligned_cols=119  Identities=22%  Similarity=0.247  Sum_probs=82.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee------------------------------cCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT------------------------------TTSD  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~------------------------------~~~~  106 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|||+........|..+.                              ....
T Consensus        22 ~~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~  101 (591)
T 3i3l_A           22 TRSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQD  101 (591)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCC
Confidence            4689999999999999999999999999999974222222221100                              0000


Q ss_pred             c----ccCC-------CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcEEEEE--CC--eEEEcCEEE
Q 016820          107 V----ENFP-------GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPFKVFT--DS--KSVLADTVI  167 (382)
Q Consensus       107 ~----~~~~-------~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~~v~~--~~--~~~~~d~lv  167 (382)
                      .    ..+.       ..+  ..+....+...+.+.+.+.|++++.+ +|+++..+ ++.+.+.+  ++  .++++|.||
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV  181 (591)
T 3i3l_A          102 QAPWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVI  181 (591)
T ss_dssp             CCCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEE
T ss_pred             CccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEE
Confidence            0    0000       001  13567788899999999999999988 79999875 44555554  34  469999999


Q ss_pred             EccCCCCc
Q 016820          168 VATGAVAK  175 (382)
Q Consensus       168 lA~G~~~~  175 (382)
                      .|+|..+.
T Consensus       182 ~AdG~~S~  189 (591)
T 3i3l_A          182 DAGGSGGP  189 (591)
T ss_dssp             ECCGGGCH
T ss_pred             ECCCCcch
Confidence            99999764

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=99.06  E-value=1.1e-09  Score=103.08  Aligned_cols=121  Identities=20%  Similarity=0.185  Sum_probs=80.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC-CCCcceecCCCc---------------------------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI-APGGQLTTTSDV---------------------------  107 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~-~~gg~~~~~~~~---------------------------  107 (382)
                      +.++||+|||||++|+++|..|++.|++|+|+|+...... ..|+.+......                           
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~g~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~  103 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREARIFGGTLDLHKGSGQEAMKKAGLLQTYYDLALPMGVNIAD  103 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCCCCSCCEECCTTTHHHHHHHTTCHHHHHHHCBCCCEEEEC
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCccccccCCeeeeCCccHHHHHHhcChHHHHHHhhcccceEEEC
Confidence            3568999999999999999999999999999997532111 123332211000                           


Q ss_pred             ------ccC--C----CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccCCC
Q 016820          108 ------ENF--P----GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAV  173 (382)
Q Consensus       108 ------~~~--~----~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~  173 (382)
                            ...  +    .....+...++.+.+.+.+.+  ++++.+ +|++++.+++.+.+...+ .++++|.||.|+|..
T Consensus       104 ~~g~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~  181 (398)
T 2xdo_A          104 EKGNILSTKNVKPENRFDNPEINRNDLRAILLNSLEN--DTVIWDRKLVMLEPGKKKWTLTFENKPSETADLVILANGGM  181 (398)
T ss_dssp             SSSEEEEECCCGGGTTSSCCEECHHHHHHHHHHTSCT--TSEEESCCEEEEEECSSSEEEEETTSCCEEESEEEECSCTT
T ss_pred             CCCCchhhccccccCCCCCceECHHHHHHHHHhhcCC--CEEEECCEEEEEEECCCEEEEEECCCcEEecCEEEECCCcc
Confidence                  000  0    000123455666666665443  567777 799999887778887654 469999999999998


Q ss_pred             CcCCC
Q 016820          174 AKKLQ  178 (382)
Q Consensus       174 ~~~~~  178 (382)
                      +..-.
T Consensus       182 S~vR~  186 (398)
T 2xdo_A          182 SKVRK  186 (398)
T ss_dssp             CSCCT
T ss_pred             hhHHh
Confidence            75543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.06  E-value=1e-09  Score=106.23  Aligned_cols=120  Identities=15%  Similarity=0.143  Sum_probs=82.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCC-Cccee-----------------c--CCCccc------
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAP-GGQLT-----------------T--TSDVEN------  109 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~-gg~~~-----------------~--~~~~~~------  109 (382)
                      ...+||+|||||++|+++|..|++.|++|+|||+........ +..+.                 .  ......      
T Consensus         9 ~~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~   88 (500)
T 2qa1_A            9 RSDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPI   88 (500)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEE
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceec
Confidence            456899999999999999999999999999999743221111 10000                 0  000000      


Q ss_pred             ----CC-CCC--CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe----EEEcCEEEEccCCCCc
Q 016820          110 ----FP-GFP--QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK----SVLADTVIVATGAVAK  175 (382)
Q Consensus       110 ----~~-~~~--~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~----~~~~d~lvlA~G~~~~  175 (382)
                          +. .++  ..+....+.+.+.+.+.+.|++++.+ +|++++.+++.+++...++    ++++|+||.|.|.++.
T Consensus        89 ~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S~  166 (500)
T 2qa1_A           89 DFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRSS  166 (500)
T ss_dssp             EGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTCH
T ss_pred             ccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcchH
Confidence                00 001  12345678888888888899999998 7999988888777665322    6999999999999764

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=99.05  E-value=9.3e-10  Score=105.61  Aligned_cols=101  Identities=18%  Similarity=0.146  Sum_probs=81.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||||++|+++|..|++.|.+|+|+|+.    ..            -+     .....++.+.+.+.+++.|++
T Consensus       168 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~----~~------------~l-----~~~~~~~~~~l~~~l~~~gV~  226 (464)
T 2eq6_A          168 LPKRLLVIGGGAVGLELGQVYRRLGAEVTLIEYM----PE------------IL-----PQGDPETAALLRRALEKEGIR  226 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----SS------------SS-----TTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEEcC----Cc------------cc-----cccCHHHHHHHHHHHHhcCCE
Confidence            4579999999999999999999999999999941    00            00     113467888888999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE--C--Ce--EEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT--D--SK--SVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~--~--~~--~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+..  +  +.  ++.+|.||+|+|.+|+...
T Consensus       227 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  275 (464)
T 2eq6_A          227 VRTKTKAVGYEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPRTEG  275 (464)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEESCTT
T ss_pred             EEcCCEEEEEEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccCCCC
Confidence            9998 7999987776655553  3  44  7999999999999988754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.04  E-value=2.3e-09  Score=100.07  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+.+.|++++.+ +|++++.+++.+. +.++++++++|.||+|+|..+
T Consensus       147 ~~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g~i~a~~VV~A~G~~s  205 (382)
T 1y56_B          147 DPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWA  205 (382)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTEEEECSEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCcEEECCEEEECcchhH
Confidence            45677888888889999999998 7999998877777 777777899999999999864

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.04  E-value=2.1e-09  Score=104.46  Aligned_cols=119  Identities=18%  Similarity=0.332  Sum_probs=79.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC--------------------CC--CCCcc--e-----ecCCCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN--------------------DI--APGGQ--L-----TTTSDV  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~--------------------~~--~~gg~--~-----~~~~~~  107 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+...-                    ..  ..+|.  +     ......
T Consensus       106 ~~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~  185 (549)
T 3nlc_A          106 LTERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKD  185 (549)
T ss_dssp             CCCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEecc
Confidence            4589999999999999999999999999999963110                    00  00110  0     000000


Q ss_pred             c------------c--------CCCCCC--CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECC-eEEE
Q 016820          108 E------------N--------FPGFPQ--GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDS-KSVL  162 (382)
Q Consensus       108 ~------------~--------~~~~~~--~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~-~~~~  162 (382)
                      .            .        +...+.  .....++.+.+.+.+.+.|++++.+ +|+++..+++.+. +.+++ .++.
T Consensus       186 ~~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          186 PNFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             TTCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEE
T ss_pred             ccccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEE
Confidence            0            0        000000  0112567778888888899999999 6999988776543 66554 4699


Q ss_pred             cCEEEEccCCCCc
Q 016820          163 ADTVIVATGAVAK  175 (382)
Q Consensus       163 ~d~lvlA~G~~~~  175 (382)
                      +|.||+|+|.+++
T Consensus       266 Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          266 SRHVVLAVGHSAR  278 (549)
T ss_dssp             CSCEEECCCTTCH
T ss_pred             CCEEEECCCCChh
Confidence            9999999999874

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=99.04  E-value=5.6e-10  Score=104.27  Aligned_cols=118  Identities=20%  Similarity=0.157  Sum_probs=79.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecC---------C----------C-----------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTT---------S----------D-----------  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~---------~----------~-----------  106 (382)
                      ..+||+|||||++|+++|..|++.|++|+|||+.........+.....         .          .           
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   89 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNK   89 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCc
Confidence            357999999999999999999999999999996422211101100000         0          0           


Q ss_pred             -cccCC--CCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          107 -VENFP--GFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       107 -~~~~~--~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                       ...++  +.+ ..+...++.+.+.+.+.+.|++++.+ +|++++. ++  .+.+ ++.++++|.||.|+|..+...
T Consensus        90 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~~--~v~~~~g~~~~ad~vV~AdG~~s~vr  163 (379)
T 3alj_A           90 SVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-VG--RLTLQTGEVLEADLIVGADGVGSKVR  163 (379)
T ss_dssp             EEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-TT--EEEETTSCEEECSEEEECCCTTCHHH
T ss_pred             eeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-CC--EEEECCCCEEEcCEEEECCCccHHHH
Confidence             00000  000 12345788889999998899999988 6999987 33  5554 345799999999999987543

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.03  E-value=1.6e-09  Score=106.72  Aligned_cols=119  Identities=24%  Similarity=0.223  Sum_probs=79.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCCCcceecCCCc--------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAPGGQLTTTSDV--------------------------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~gg~~~~~~~~--------------------------  107 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.....   ...++.+......                          
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~  204 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIN  204 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            35899999999999999999999999999999642111   0111111100000                          


Q ss_pred             -----------------------ccC------CCC--C-----CC--CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820          108 -----------------------ENF------PGF--P-----QG--ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK  148 (382)
Q Consensus       108 -----------------------~~~------~~~--~-----~~--~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~  148 (382)
                                             ..+      .+.  +     ..  .....+...|.+.+++.|++++.+ +|+++..+
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~  284 (571)
T 1y0p_A          205 DPALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKD  284 (571)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC
T ss_pred             CHHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEc
Confidence                                   000      000  0     00  234678888999999999999998 69998876


Q ss_pred             C-Cc---EEEEE-CCe--EEEcCEEEEccCCCCc
Q 016820          149 S-RP---FKVFT-DSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       149 ~-~~---~~v~~-~~~--~~~~d~lvlA~G~~~~  175 (382)
                      + +.   +.+.. ++.  ++.+|.||+|+|..+.
T Consensus       285 ~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~  318 (571)
T 1y0p_A          285 DKGTVKGILVKGMYKGYYWVKADAVILATGGFAK  318 (571)
T ss_dssp             TTSCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             CCCeEEEEEEEeCCCcEEEEECCeEEEeCCCccc
Confidence            5 44   34444 444  5899999999999653

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=99.03  E-value=1.3e-09  Score=104.46  Aligned_cols=101  Identities=16%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|++|+++|..|++.|.+|+|+|+.    ..+            ++     ....++.+.+.+.+++.|++
T Consensus       169 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~----~~~------------l~-----~~~~~~~~~l~~~l~~~gv~  227 (455)
T 1ebd_A          169 VPKSLVVIGGGYIGIELGTAYANFGTKVTILEGA----GEI------------LS-----GFEKQMAAIIKKRLKKKGVE  227 (455)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS----SSS------------ST-----TSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC----Ccc------------cc-----ccCHHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999941    000            11     13467888888889999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+..    ++.++.+|.||+|+|.+|+...
T Consensus       228 i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~  274 (455)
T 1ebd_A          228 VVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVTVGRRPNTDE  274 (455)
T ss_dssp             EEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEECSCEEESCSS
T ss_pred             EEeCCEEEEEEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcccCc
Confidence            9998 7999987766555543    2346999999999999987653

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.01  E-value=3.2e-09  Score=104.62  Aligned_cols=119  Identities=23%  Similarity=0.304  Sum_probs=81.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc------CCCeEEEecccCCCC--CCCcceec-------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA------ELKPILFEGWMANDI--APGGQLTT-------------------------  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~~~~~~--~~gg~~~~-------------------------  103 (382)
                      ..+||+|||||++|+++|+.|++.      |++|+|||+...-..  ..|+.+..                         
T Consensus        34 ~~~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~  113 (584)
T 2gmh_A           34 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDR  113 (584)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEE
T ss_pred             cCCCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhh
Confidence            458999999999999999999999      999999997422111  11221100                         


Q ss_pred             ----CC-CcccCCCCC---------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC-cEE-EEEC---------
Q 016820          104 ----TS-DVENFPGFP---------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR-PFK-VFTD---------  157 (382)
Q Consensus       104 ----~~-~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~-~~~-v~~~---------  157 (382)
                          .. ....++..+         ..+...++.+.|.+.+++.|++++.+ +|+++..+++ .+. +.+.         
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~  193 (584)
T 2gmh_A          114 FGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGA  193 (584)
T ss_dssp             EEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSC
T ss_pred             eeeeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCC
Confidence                00 000111111         12355688899999999999999998 6999887653 343 5443         


Q ss_pred             -------CeEEEcCEEEEccCCCCc
Q 016820          158 -------SKSVLADTVIVATGAVAK  175 (382)
Q Consensus       158 -------~~~~~~d~lvlA~G~~~~  175 (382)
                             +.++++|+||+|+|.++.
T Consensus       194 ~~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          194 PKTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEEEECCCEEECSEEEECCCTTCH
T ss_pred             cccccCCceEEECCEEEEeeCCCch
Confidence                   257999999999999764

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.01  E-value=1.4e-09  Score=102.14  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=78.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC---------Cc----cc-------C----CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS---------DV----EN-------F----PG  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~---------~~----~~-------~----~~  112 (382)
                      .++||+|||||++|+++|..|++.|++|+|+|+........|..+....         ..    ..       +    .+
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g   83 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTG   83 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCC
Confidence            4579999999999999999999999999999975321111122111000         00    00       0    00


Q ss_pred             -------CCC-CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcC
Q 016820          113 -------FPQ-GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       113 -------~~~-~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~  176 (382)
                             .+. ......+.+.+.+.+  .+++++.+ +|++++.+++.+.+...+ .++++|.||.|+|.++..
T Consensus        84 ~~~~~~~~~~~~~~~~~l~~~L~~~~--~~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~ad~vV~AdG~~S~v  155 (397)
T 2vou_A           84 ERVGSVPADWRFTSYDSIYGGLYELF--GPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGASVV  155 (397)
T ss_dssp             CEEEEEECCCCEEEHHHHHHHHHHHH--CSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTCHH
T ss_pred             CccccccCcccccCHHHHHHHHHHhC--CCcEEEcCCEEEEEEecCCEEEEEECCCCEEECCEEEECCCcchhH
Confidence                   000 122345666666554  47888888 699998888888887754 469999999999997643

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=99.00  E-value=5.4e-09  Score=99.94  Aligned_cols=103  Identities=15%  Similarity=0.179  Sum_probs=84.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..                    .+.......++.+.+.+.+++.|++
T Consensus       146 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~d~~~~~~l~~~l~~~GV~  205 (452)
T 3oc4_A          146 NSQTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLE--------------------NLLPKYFDKEMVAEVQKSLEKQAVI  205 (452)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------SSSTTTCCHHHHHHHHHHHHTTTEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhCCCeEEEEEccC--------------------ccccccCCHHHHHHHHHHHHHcCCE
Confidence            45789999999999999999999999999999410                    0001123477888999999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ++.+ .|.+++..++.+.+.++++++.+|.||+|+|.+|+...+
T Consensus       206 i~~~~~v~~i~~~~~~v~v~~~~g~i~aD~Vv~A~G~~p~~~~l  249 (452)
T 3oc4_A          206 FHFEETVLGIEETANGIVLETSEQEISCDSGIFALNLHPQLAYL  249 (452)
T ss_dssp             EEETCCEEEEEECSSCEEEEESSCEEEESEEEECSCCBCCCSSC
T ss_pred             EEeCCEEEEEEccCCeEEEEECCCEEEeCEEEECcCCCCChHHH
Confidence            9998 699998766677777777799999999999999987644

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=99.00  E-value=5.5e-13  Score=132.20  Aligned_cols=61  Identities=10%  Similarity=0.184  Sum_probs=49.9

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      +++.|++++.++.+.+|..+++++.+.+|++.+..+++...+.+|.||+|+|..+++.++.
T Consensus       270 ~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A~~VIlaaG~~~s~~lL~  330 (623)
T 3pl8_A          270 APEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLV  330 (623)
T ss_dssp             EEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECEEEEEECSCTTHHHHHHH
T ss_pred             ccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEECCEEEEcCCCcCCHHHHH
Confidence            3445899999999999998765545788988875456667899999999999999988775

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=99.00  E-value=1.6e-09  Score=104.19  Aligned_cols=99  Identities=20%  Similarity=0.184  Sum_probs=82.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++.                    +.+ .. ...++.+.+.+.+++.|++
T Consensus       175 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~--------------------~~~-l~-~~~~~~~~l~~~l~~~Gv~  232 (467)
T 1zk7_A          175 IPERLAVIGSSVVALELAQAFARLGSKVTVLARN--------------------TLF-FR-EDPAIGEAVTAAFRAEGIE  232 (467)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS--------------------CTT-TT-SCHHHHHHHHHHHHHTTCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEEC--------------------Ccc-CC-CCHHHHHHHHHHHHhCCCE
Confidence            4579999999999999999999999999999931                    000 01 3467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ +|.+++.+++.+.+.++++++.+|.||+|+|.+|+..
T Consensus       233 i~~~~~v~~i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~p~~~  274 (467)
T 1zk7_A          233 VLEHTQASQVAHMDGEFVLTTTHGELRADKLLVATGRTPNTR  274 (467)
T ss_dssp             EETTCCEEEEEEETTEEEEEETTEEEEESEEEECSCEEESCT
T ss_pred             EEcCCEEEEEEEeCCEEEEEECCcEEEcCEEEECCCCCcCCC
Confidence            9988 7999988777677777778899999999999998764

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.00  E-value=3.6e-09  Score=97.99  Aligned_cols=57  Identities=16%  Similarity=0.123  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCe---EEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSK---SVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~---~~~~d~lvlA~G~~~  174 (382)
                      ....+.+.+.+.+++.|++++.+ +|+++..+++. +.+.++++   ++++|.||+|+|.+.
T Consensus       148 ~~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          148 DSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            35678888888889999999988 79999887655 77777654   799999999999864

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=98.98  E-value=1.5e-09  Score=101.86  Aligned_cols=120  Identities=15%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccC---CCCCCCcceecC---------------------CCc------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMA---NDIAPGGQLTTT---------------------SDV------  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~---~~~~~gg~~~~~---------------------~~~------  107 (382)
                      ++||+|||||++|+++|..|++.|++|+|+|+...   .....++.+...                     ...      
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~   81 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECC
Confidence            47999999999999999999999999999997431   011111111000                     000      


Q ss_pred             --c--cC-----CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEEEEE--CCe--EEEcCEEEEccCC
Q 016820          108 --E--NF-----PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFKVFT--DSK--SVLADTVIVATGA  172 (382)
Q Consensus       108 --~--~~-----~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~v~~--~~~--~~~~d~lvlA~G~  172 (382)
                        .  .+     ......+...++.+.+.+.+.+.|++++.+ +|+++..++ +.+.+..  ++.  ++++|.||.|+|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~  161 (394)
T 1k0i_A           82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGF  161 (394)
T ss_dssp             EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred             ceEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCC
Confidence              0  00     000011245677788888888889999988 799998753 4455543  555  6999999999999


Q ss_pred             CCcCC
Q 016820          173 VAKKL  177 (382)
Q Consensus       173 ~~~~~  177 (382)
                      ++..-
T Consensus       162 ~S~vr  166 (394)
T 1k0i_A          162 HGISR  166 (394)
T ss_dssp             TCSTG
T ss_pred             CcHHH
Confidence            87654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=98.98  E-value=1.7e-09  Score=100.85  Aligned_cols=57  Identities=18%  Similarity=0.103  Sum_probs=48.9

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+++.|++++.+ .|+++..+++.+.+.++++++++|+||+|+|.+.
T Consensus       152 ~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~VV~A~G~~s  209 (381)
T 3nyc_A          152 DTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAGSYRAAVLVNAAGAWC  209 (381)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSEEEEESEEEECCGGGH
T ss_pred             CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCCEEEcCEEEECCChhH
Confidence            34677788888888999999987 7999988888888888888999999999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=98.98  E-value=4.8e-09  Score=99.89  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=47.7

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe----eEEEEEecCCcEE-EEECCe-EEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE----TVSKVDFKSRPFK-VFTDSK-SVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~----~v~~i~~~~~~~~-v~~~~~-~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+++.|++++.+    +|++|..+++.+. +.+.++ ++.+|.||+|+|...
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG~~s  221 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAGASA  221 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCCCCh
Confidence            4578888888899999999988    5999988887777 877666 799999999999964

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=98.98  E-value=2.4e-09  Score=102.42  Aligned_cols=121  Identities=26%  Similarity=0.262  Sum_probs=82.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC---CCCCCccee-----cCC---C-----------cccC----
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN---DIAPGGQLT-----TTS---D-----------VENF----  110 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---~~~~gg~~~-----~~~---~-----------~~~~----  110 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+....   ....|..+.     ...   .           ...+    
T Consensus         5 ~~~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~   84 (453)
T 3atr_A            5 LKYDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDM   84 (453)
T ss_dssp             EECSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCC
Confidence            3589999999999999999999999999999974311   111222110     000   0           0000    


Q ss_pred             ------CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE---EEE--CCe--EEEcCEEEEccCCCCcC
Q 016820          111 ------PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK---VFT--DSK--SVLADTVIVATGAVAKK  176 (382)
Q Consensus       111 ------~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~---v~~--~~~--~~~~d~lvlA~G~~~~~  176 (382)
                            +.....+...++.+.+.+.+.+.|++++.+ +|++++.+++.+.   +..  ++.  ++++|.||.|+|..+..
T Consensus        85 ~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s~v  164 (453)
T 3atr_A           85 QTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSRSF  164 (453)
T ss_dssp             SCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGCTT
T ss_pred             ceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCchhh
Confidence                  000012456788888999888899999988 6999987776643   333  344  69999999999997655


Q ss_pred             C
Q 016820          177 L  177 (382)
Q Consensus       177 ~  177 (382)
                      .
T Consensus       165 r  165 (453)
T 3atr_A          165 R  165 (453)
T ss_dssp             G
T ss_pred             H
Confidence            4

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=98.97  E-value=2.8e-09  Score=99.05  Aligned_cols=55  Identities=13%  Similarity=0.096  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ..+...+.+.+.+.|++++.+ +|+++..+++.+.+.++++++.+|.||+|+|.+.
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~~~a~~vV~a~G~~s  204 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEYQAKKAIVCAGTWV  204 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCEEEEEEEEECCGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCeEEcCEEEEcCCccH
Confidence            467788888888899999988 7999998777788888777899999999999864

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=98.97  E-value=3.2e-09  Score=101.42  Aligned_cols=104  Identities=27%  Similarity=0.211  Sum_probs=82.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|++|+++|..|++.|.+|+++|+.    ..+            .    ......++.+.+.+.+++.|++
T Consensus       148 ~~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~----~~~------------l----~~~~~~~~~~~l~~~l~~~gv~  207 (447)
T 1nhp_A          148 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL----DRP------------L----GVYLDKEFTDVLTEEMEANNIT  207 (447)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS----SST------------T----TTTCCHHHHHHHHHHHHTTTEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCeEEEEecC----ccc------------c----cccCCHHHHHHHHHHHHhCCCE
Confidence            4689999999999999999999999999999942    000            0    0123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFP  180 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~  180 (382)
                      ++.+ +|.+++.+++.+.+.+++.++.+|.||+|+|.+|+.+.++
T Consensus       208 i~~~~~v~~i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~~~~~~  252 (447)
T 1nhp_A          208 IATGETVERYEGDGRVQKVVTDKNAYDADLVVVAVGVRPNTAWLK  252 (447)
T ss_dssp             EEESCCEEEEECSSBCCEEEESSCEEECSEEEECSCEEESCGGGT
T ss_pred             EEcCCEEEEEEccCcEEEEEECCCEEECCEEEECcCCCCChHHHH
Confidence            9998 6999987643334566777899999999999998765443

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=98.97  E-value=5.3e-09  Score=102.85  Aligned_cols=119  Identities=20%  Similarity=0.250  Sum_probs=79.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCC---CCCcceecCCC---------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDI---APGGQLTTTSD---------------------------  106 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~---~~gg~~~~~~~---------------------------  106 (382)
                      ..+||+|||||++|+++|+.|++.|.+|+|||+......   ..++.+.....                           
T Consensus       120 ~~~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~  199 (566)
T 1qo8_A          120 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN  199 (566)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCC
Confidence            568999999999999999999999999999996321110   01111110000                           


Q ss_pred             -------------------------c---ccCCCC--C-----C--CCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820          107 -------------------------V---ENFPGF--P-----Q--GILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK  148 (382)
Q Consensus       107 -------------------------~---~~~~~~--~-----~--~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~  148 (382)
                                               +   ..+.+.  +     .  ......+.+.|.+.+.+.|++++.+ +|+++..+
T Consensus       200 ~~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~  279 (566)
T 1qo8_A          200 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN  279 (566)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC
T ss_pred             CHHHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEC
Confidence                                     0   000000  0     0  0236678888999999999999998 69998876


Q ss_pred             C-Cc---EEEEE-CCe--EEEcCEEEEccCCCCc
Q 016820          149 S-RP---FKVFT-DSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       149 ~-~~---~~v~~-~~~--~~~~d~lvlA~G~~~~  175 (382)
                      + +.   +.+.. ++.  ++.+|.||+|+|....
T Consensus       280 ~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~  313 (566)
T 1qo8_A          280 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGM  313 (566)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTT
T ss_pred             CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCccc
Confidence            6 54   34443 343  5899999999999764

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.97  E-value=3.1e-09  Score=102.26  Aligned_cols=102  Identities=14%  Similarity=0.054  Sum_probs=80.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||+|+.|+++|..|++.|.+|+++|+..    .            -++    .....++.+.+++.+++.|++
T Consensus       177 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~------------~l~----~~~~~~~~~~l~~~l~~~Gv~  236 (474)
T 1zmd_A          177 VPEKMVVIGAGVIGVELGSVWQRLGADVTAVEFLG----H------------VGG----VGIDMEISKNFQRILQKQGFK  236 (474)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS----S------------SSC----SSCCHHHHHHHHHHHHHTTCE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEeccC----c------------cCC----cccCHHHHHHHHHHHHHCCCE
Confidence            45789999999999999999999999999999410    0            001    023467888899999999999


Q ss_pred             EEEe-eEEEEEecCCc-EEEEE------CCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP-FKVFT------DSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~-~~v~~------~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ +|.+++.+++. +.+..      ++.++.+|.||+|+|.+|+...
T Consensus       237 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~~~~  286 (474)
T 1zmd_A          237 FKLNTKVTGATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPFTKN  286 (474)
T ss_dssp             EECSEEEEEEEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEECCTT
T ss_pred             EEeCceEEEEEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcCCCc
Confidence            9998 79999877655 65552      3456999999999999987653

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.96  E-value=1e-09  Score=100.91  Aligned_cols=110  Identities=14%  Similarity=0.256  Sum_probs=72.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHH---cCCCeEEEecccCCCCCCCcceecCCC-----------cc----------------
Q 016820           59 TKVCIIGSGPAAHTAAIYAAR---AELKPILFEGWMANDIAPGGQLTTTSD-----------VE----------------  108 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~---~g~~v~lie~~~~~~~~~gg~~~~~~~-----------~~----------------  108 (382)
                      +||+|||||++|+++|+.|++   .|++|+|+|+    ....||.+.....           ..                
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek----~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~   77 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK----ADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFY   77 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECS----SSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHH
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEEC----CCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHH
Confidence            589999999999999999999   8999999995    3344443321100           00                


Q ss_pred             ----------cCCCC-------C---CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEE
Q 016820          109 ----------NFPGF-------P---QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTV  166 (382)
Q Consensus       109 ----------~~~~~-------~---~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~l  166 (382)
                                .+...       .   .......+....+..+++.|++++.+ .|++|+.+++.|.+.++++ .+.+|+|
T Consensus        78 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~v  157 (342)
T 3qj4_A           78 DELLAYGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDKWEVSKQTGSPEQFDLI  157 (342)
T ss_dssp             HHHHHTTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEESSSCCEEESEE
T ss_pred             HHHHhCCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEE
Confidence                      00000       0   00001112223333444558999888 6999999888899887654 4899999


Q ss_pred             EEccCC
Q 016820          167 IVATGA  172 (382)
Q Consensus       167 vlA~G~  172 (382)
                      |+|+..
T Consensus       158 V~A~p~  163 (342)
T 3qj4_A          158 VLTMPV  163 (342)
T ss_dssp             EECSCH
T ss_pred             EECCCH
Confidence            999964

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.96  E-value=3.4e-09  Score=101.74  Aligned_cols=101  Identities=18%  Similarity=0.206  Sum_probs=80.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||+.|+++|..|++.|.+|+++++.    .    .        -++     ....++.+.+.+.+++.|++
T Consensus       170 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~----~----~--------~l~-----~~~~~~~~~l~~~l~~~gv~  228 (464)
T 2a8x_A          170 LPKSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFL----P----R--------ALP-----NEDADVSKEIEKQFKKLGVT  228 (464)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----S----S--------SST-----TSCHHHHHHHHHHHHHHTCE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEEcC----C----c--------ccc-----ccCHHHHHHHHHHHHHcCCE
Confidence            4579999999999999999999999999999941    0    0        011     13467888888999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE--CC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT--DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+..  ++  .++.+|.||+|+|.+|+...
T Consensus       229 i~~~~~v~~i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~~~~  275 (464)
T 2a8x_A          229 ILTATKVESIADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPNVEG  275 (464)
T ss_dssp             EECSCEEEEEEECSSCEEEEEESSSCEEEEEESEEEECSCEEECCSS
T ss_pred             EEeCcEEEEEEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCccCCC
Confidence            9998 7999987765565553  34  46999999999999987653

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.95  E-value=2.7e-09  Score=102.35  Aligned_cols=100  Identities=15%  Similarity=0.029  Sum_probs=80.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+++|||||++|+++|..|++.|.+|+++++.    ..            .+     .....++.+.+.+.+++.|++
T Consensus       165 ~~~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~----~~------------~l-----~~~~~~~~~~l~~~l~~~gv~  223 (463)
T 2r9z_A          165 QPKRVAIIGAGYIGIELAGLLRSFGSEVTVVALE----DR------------LL-----FQFDPLLSATLAENMHAQGIE  223 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----SS------------SS-----TTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcC----Cc------------cc-----cccCHHHHHHHHHHHHHCCCE
Confidence            3578999999999999999999999999999941    00            00     112357778888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-Ce-EEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-SK-SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~~-~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ +|.+++.+++.+.+.++ +. ++.+|.||+|+|.+|+..
T Consensus       224 i~~~~~v~~i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~~  267 (463)
T 2r9z_A          224 THLEFAVAALERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPNTR  267 (463)
T ss_dssp             EESSCCEEEEEEETTEEEEEETTCCEEEEESEEEECSCEEESCT
T ss_pred             EEeCCEEEEEEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcCCC
Confidence            9998 69999876655666664 44 699999999999998874

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.95  E-value=1.5e-09  Score=104.03  Aligned_cols=99  Identities=15%  Similarity=0.183  Sum_probs=78.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||++|+++|..|++.|.+|+|+|+.    ..+            .+     ...+++.+.+.+.+++.|++
T Consensus       170 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~----~~~------------l~-----~~~~~~~~~l~~~l~~~gv~  228 (458)
T 1lvl_A          170 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR----ERI------------LP-----TYDSELTAPVAESLKKLGIA  228 (458)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS----SSS------------ST-----TSCHHHHHHHHHHHHHHTCE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHHCCCeEEEEEcC----Ccc------------cc-----ccCHHHHHHHHHHHHHCCCE
Confidence            4578999999999999999999999999999941    000            11     13467888888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-C--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-S--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++. ++ +.+..+ +  .++.+|.||+|+|.+|+.+.
T Consensus       229 i~~~~~v~~i~~-~~-v~v~~~~G~~~~i~~D~vv~a~G~~p~~~~  272 (458)
T 1lvl_A          229 LHLGHSVEGYEN-GC-LLANDGKGGQLRLEADRVLVAVGRRPRTKG  272 (458)
T ss_dssp             EETTCEEEEEET-TE-EEEECSSSCCCEECCSCEEECCCEEECCSS
T ss_pred             EEECCEEEEEEe-CC-EEEEECCCceEEEECCEEEECcCCCcCCCC
Confidence            9998 7999987 43 656533 3  46999999999999998764

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=98.95  E-value=6.8e-09  Score=97.47  Aligned_cols=54  Identities=19%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~  173 (382)
                      ..+...+.+.+.+.|++++.+ +|+++..+++.+.+.++++++++|.||+|+|.+
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g~i~a~~VV~A~G~~  207 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRGTYRAGKVVLACGPY  207 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSCEEEEEEEEECCGGG
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCCEEEcCEEEEcCCcC
Confidence            456677778888889999998 699998887778888877889999999999986

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.95  E-value=3.6e-09  Score=101.14  Aligned_cols=100  Identities=19%  Similarity=0.159  Sum_probs=79.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||+.|+++|..|++.|.+|+++|+.    ..            .++     ....++.+.+.+.+++.|++
T Consensus       166 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~----~~------------~l~-----~~~~~~~~~l~~~l~~~Gv~  224 (450)
T 1ges_A          166 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF----DA------------PLP-----SFDPMISETLVEVMNAEGPQ  224 (450)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----SS------------SST-----TSCHHHHHHHHHHHHHHSCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhcCCEEEEEEeC----Cc------------hhh-----hhhHHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999941    00            011     12357888888888999999


Q ss_pred             EEEe-eEEEEEecCCc-EEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRP-FKVFTD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~-~~v~~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++. +.+.++ +.++.+|.||+|+|.+|+..
T Consensus       225 i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~~~  268 (450)
T 1ges_A          225 LHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIGREPAND  268 (450)
T ss_dssp             EECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             EEeCCEEEEEEEeCCcEEEEEECCCcEEEcCEEEECCCCCcCCC
Confidence            9998 69999876543 566654 44799999999999998875

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.95  E-value=4.3e-09  Score=101.97  Aligned_cols=99  Identities=17%  Similarity=0.165  Sum_probs=79.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|+++|.+|+++++..        .        -+     ....+++.+.+.+.+++.|+++
T Consensus       176 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--------~--------~l-----~~~d~~~~~~l~~~l~~~gv~i  234 (500)
T 1onf_A          176 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARGN--------R--------IL-----RKFDESVINVLENDMKKNNINI  234 (500)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS--------S--------SC-----TTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECChHHHHHHHHHHHHcCCeEEEEecCC--------c--------cC-----cccchhhHHHHHHHHHhCCCEE
Confidence            5799999999999999999999999999999310        0        01     1234678888899999999999


Q ss_pred             EEe-eEEEEEecCC-cEEEEEC-CeE-EEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSR-PFKVFTD-SKS-VLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~-~~~v~~~-~~~-~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ ++.+++.+++ .+.+..+ +.+ +.+|.||+|+|.+|+..
T Consensus       235 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~~~  278 (500)
T 1onf_A          235 VTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPDTE  278 (500)
T ss_dssp             ECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECCCBCCTTT
T ss_pred             EECCEEEEEEEcCCceEEEEECCCcEEEECCEEEECCCCCcCCC
Confidence            999 6999987643 3556554 445 89999999999999874

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=98.94  E-value=5e-09  Score=97.95  Aligned_cols=56  Identities=25%  Similarity=0.324  Sum_probs=48.3

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+++.|++++.+ +|+++..+++.+.+.++++++++|.||+|+|.++
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~a~~vV~A~G~~~  205 (389)
T 2gf3_A          149 SENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWN  205 (389)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCCEEEeCEEEEecCccH
Confidence            3677788888889999999988 7999998777788888888899999999999864

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.93  E-value=3.9e-09  Score=101.67  Aligned_cols=100  Identities=14%  Similarity=0.129  Sum_probs=79.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||+.|+++|..|++.|.+|+++|+.    ..            -+     .....++.+.+.+.+++.|++
T Consensus       182 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~----~~------------~l-----~~~~~~~~~~l~~~l~~~gv~  240 (478)
T 1v59_A          182 IPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ----PQ------------IG-----ASMDGEVAKATQKFLKKQGLD  240 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----SS------------SS-----SSSCHHHHHHHHHHHHHTTCE
T ss_pred             cCceEEEECCCHHHHHHHHHHHHcCCEEEEEEeC----Cc------------cc-----cccCHHHHHHHHHHHHHCCCE
Confidence            3579999999999999999999999999999941    00            00     123467888899999999999


Q ss_pred             EEEe-eEEEEEe--cCCcEEEEEC------CeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDF--KSRPFKVFTD------SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~--~~~~~~v~~~------~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.  +++.+.+...      +.++.+|.||+|+|.+|+..
T Consensus       241 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~  290 (478)
T 1v59_A          241 FKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPYIA  290 (478)
T ss_dssp             EECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEECCT
T ss_pred             EEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcCCC
Confidence            9998 7999987  5554555432      34699999999999998875

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.93  E-value=2.3e-09  Score=103.43  Aligned_cols=100  Identities=18%  Similarity=0.092  Sum_probs=79.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||+.|+++|..|++.|.+|+|+|+..    .            -+     ....+++.+.+.+.+++.||+
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~~----~------------~l-----~~~~~~~~~~l~~~l~~~gV~  242 (482)
T 1ojt_A          184 VPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMD----G------------LM-----QGADRDLVKVWQKQNEYRFDN  242 (482)
T ss_dssp             CCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSS----S------------SS-----TTSCHHHHHHHHHHHGGGEEE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEECC----c------------cc-----cccCHHHHHHHHHHHHhcCCE
Confidence            36799999999999999999999999999999410    0            01     123467888889999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-----CeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-----SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-----~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++.+.+...     +.++.+|.||+|+|.+|+..
T Consensus       243 i~~~~~v~~i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~~~  289 (482)
T 1ojt_A          243 IMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPNGK  289 (482)
T ss_dssp             EECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCEEECGG
T ss_pred             EEECCEEEEEEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcCCC
Confidence            9998 79999877665555443     45689999999999998764

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.92  E-value=5.7e-09  Score=100.27  Aligned_cols=101  Identities=14%  Similarity=0.098  Sum_probs=79.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH-HHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS-LRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~gi  135 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..        .        -++     ...+++.+.+.+.+ ++.|+
T Consensus       173 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------~--------~l~-----~~d~~~~~~l~~~l~~~~gv  231 (468)
T 2qae_A          173 VPKTMVVIGGGVIGLELGSVWARLGAEVTVVEFAP--------R--------CAP-----TLDEDVTNALVGALAKNEKM  231 (468)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------S--------SST-----TSCHHHHHHHHHHHHHHTCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHhCCEEEEEecCC--------c--------ccc-----cCCHHHHHHHHHHHhhcCCc
Confidence            45799999999999999999999999999999410        0        011     13467888888888 89999


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE---CC--eEEEcCEEEEccCCCCcCCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT---DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      +++.+ +|.+++.+++.+.+..   ++  .++.+|.||+|+|.+|+...
T Consensus       232 ~i~~~~~v~~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  280 (468)
T 2qae_A          232 KFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGG  280 (468)
T ss_dssp             EEECSCEEEEEEECSSSEEEEEECC---EEEEEESEEEECSCEEECCTT
T ss_pred             EEEeCCEEEEEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccCCCC
Confidence            99998 7999987766565553   23  46999999999999987653

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.92  E-value=7.5e-09  Score=100.25  Aligned_cols=101  Identities=13%  Similarity=0.138  Sum_probs=81.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|.+.|.+|+++++..        .        .++     ...+++.+.+.+.+++.|++
T Consensus       181 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~--------~--------~l~-----~~d~~~~~~l~~~l~~~GV~  239 (499)
T 1xdi_A          181 LPDHLIVVGSGVTGAEFVDAYTELGVPVTVVASQD--------H--------VLP-----YEDADAALVLEESFAERGVR  239 (499)
T ss_dssp             CCSSEEEESCSHHHHHHHHHHHHTTCCEEEECSSS--------S--------SSC-----CSSHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC--------c--------ccc-----ccCHHHHHHHHHHHHHCCCE
Confidence            45799999999999999999999999999999410        0        011     13467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .|.+++.+++.+.+.++ +.++.+|.||+|+|.+|+...
T Consensus       240 i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~~  283 (499)
T 1xdi_A          240 LFKNARAASVTRTGAGVLVTMTDGRTVEGSHALMTIGSVPNTSG  283 (499)
T ss_dssp             EETTCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCSS
T ss_pred             EEeCCEEEEEEEeCCEEEEEECCCcEEEcCEEEECCCCCcCCCc
Confidence            9998 79999887666777654 457999999999999988743

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.92  E-value=4.8e-09  Score=101.05  Aligned_cols=99  Identities=13%  Similarity=0.100  Sum_probs=78.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||+.|+++|..|++.|.+|+++++..    .            -+     ....+++.+.+.+.+++.|++
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~----~------------~l-----~~~d~~~~~~l~~~l~~~Gv~  242 (479)
T 2hqm_A          184 QPKKVVVVGAGYIGIELAGVFHGLGSETHLVIRGE----T------------VL-----RKFDECIQNTITDHYVKEGIN  242 (479)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCEEEEECSSS----S------------SC-----TTSCHHHHHHHHHHHHHHTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEeCC----c------------cc-----cccCHHHHHHHHHHHHhCCeE
Confidence            45789999999999999999999999999999410    0            01     113467888888889999999


Q ss_pred             EEEe-eEEEEEecCCc--EEEEECC--eEEEcCEEEEccCCCCcC
Q 016820          137 IFTE-TVSKVDFKSRP--FKVFTDS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~--~~v~~~~--~~~~~d~lvlA~G~~~~~  176 (382)
                      ++.+ +|.+++.+++.  +.+..++  .++.+|.||+|+|.+|+.
T Consensus       243 i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~~  287 (479)
T 2hqm_A          243 VHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSHL  287 (479)
T ss_dssp             EECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEECC
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCcc
Confidence            9999 69999875443  5666544  469999999999999886

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=98.91  E-value=1.2e-08  Score=102.61  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+.+.|++++.+ +|+++..+++.|.+.+. ++++.+|.||+|+|...
T Consensus       415 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~Ad~VVlAtG~~s  473 (676)
T 3ps9_A          415 CPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQATHSVVVLANGHQI  473 (676)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEEESEEEECCGGGG
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEECCEEEECCCcch
Confidence            34677788888888999999998 79999988888888874 46799999999999964

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=98.91  E-value=1.3e-08  Score=102.47  Aligned_cols=57  Identities=16%  Similarity=0.124  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe--EEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~--~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+.+.|++++.+ +|+++..+++.|.+.++++  ++.+|.||+|+|...
T Consensus       410 ~p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i~Ad~VVlAtG~~s  469 (689)
T 3pvc_A          410 CPSDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAKHHATVILATGHRL  469 (689)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCEEESEEEECCGGGT
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEEECCEEEECCCcch
Confidence            34577778888888999999998 7999998888888887654  799999999999964

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.91  E-value=5.2e-09  Score=98.79  Aligned_cols=117  Identities=17%  Similarity=0.180  Sum_probs=77.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecC-----------------------CCcc--c--
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTT-----------------------SDVE--N--  109 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~-----------------------~~~~--~--  109 (382)
                      .+||+|||||++|+++|..|++.|++ |+|+|+...... .|..+...                       ....  .  
T Consensus         4 ~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~-~g~g~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   82 (410)
T 3c96_A            4 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP-LGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQS   82 (410)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC-CSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc-ceeEEEEChHHHHHHHHCCChHHHHhhCCCcceEEEEcCC
Confidence            47999999999999999999999999 999997432111 11111000                       0000  0  


Q ss_pred             ------C-----CCC--C-CCCChHHHHHHHHHHHHH-cC-cEEEEe-eEEEEEecCCcEEEEEC----C--eEEEcCEE
Q 016820          110 ------F-----PGF--P-QGILGGDLMDRCRNQSLR-FG-TQIFTE-TVSKVDFKSRPFKVFTD----S--KSVLADTV  166 (382)
Q Consensus       110 ------~-----~~~--~-~~~~~~~~~~~~~~~~~~-~g-i~~~~~-~v~~i~~~~~~~~v~~~----~--~~~~~d~l  166 (382)
                            .     ..+  + ..+...++.+.+.+.+.+ .| ++++.+ +|++++. ++.+.+...    +  .++++|.|
T Consensus        83 g~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~~~g~~~v~~~~~v~~i~~-~~~v~v~~~~~~~g~~~~~~ad~v  161 (410)
T 3c96_A           83 GATVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEE-RDGRVLIGARDGHGKPQALGADVL  161 (410)
T ss_dssp             SCEEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEE-ETTEEEEEEEETTSCEEEEEESEE
T ss_pred             CCEEeeccCCccccCCCCeeeeeHHHHHHHHHHHHHhhCCCcEEEECCEEEEEec-CCccEEEEecCCCCCceEEecCEE
Confidence                  0     000  0 123456788888888776 46 578888 7888887 556665542    4  46999999


Q ss_pred             EEccCCCCcC
Q 016820          167 IVATGAVAKK  176 (382)
Q Consensus       167 vlA~G~~~~~  176 (382)
                      |.|+|..+..
T Consensus       162 V~AdG~~S~v  171 (410)
T 3c96_A          162 VGADGIHSAV  171 (410)
T ss_dssp             EECCCTTCHH
T ss_pred             EECCCccchh
Confidence            9999997643

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.90  E-value=6e-09  Score=100.69  Aligned_cols=100  Identities=14%  Similarity=0.047  Sum_probs=79.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|+.|+++|..|++.|.+|+++++.    ..                 .......++.+.+.+.+++. ++
T Consensus       173 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~----~~-----------------~l~~~d~~~~~~l~~~l~~~-V~  230 (492)
T 3ic9_A          173 LPKSVAVFGPGVIGLELGQALSRLGVIVKVFGRS----GS-----------------VANLQDEEMKRYAEKTFNEE-FY  230 (492)
T ss_dssp             CCSEEEEESSCHHHHHHHHHHHHTTCEEEEECCT----TC-----------------CTTCCCHHHHHHHHHHHHTT-SE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEEC----Cc-----------------ccccCCHHHHHHHHHHHhhC-cE
Confidence            4679999999999999999999999999999941    00                 01123467888888888877 99


Q ss_pred             EEEe-eEEEEEecCCcEEEEE---CC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT---DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~---~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..++.+++.+.+..   ++  .++.+|.||+|+|.+|+...
T Consensus       231 i~~~~~v~~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~~~~  278 (492)
T 3ic9_A          231 FDAKARVISTIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKANVDK  278 (492)
T ss_dssp             EETTCEEEEEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEESCSS
T ss_pred             EEECCEEEEEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccCCCC
Confidence            9988 7899988777776665   34  56999999999999987764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.90  E-value=8.9e-09  Score=99.45  Aligned_cols=100  Identities=17%  Similarity=0.051  Sum_probs=80.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      ...+++|||+|+.|+++|..|++.   |.+|+++++..    .            -++     ...+++.+.+.+.+++.
T Consensus       186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~----~------------~l~-----~~d~~~~~~l~~~l~~~  244 (490)
T 1fec_A          186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD----M------------ILR-----GFDSELRKQLTEQLRAN  244 (490)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS----S------------SST-----TSCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCC----C------------ccc-----ccCHHHHHHHHHHHHhC
Confidence            457999999999999999999999   99999999410    0            011     12467888889999999


Q ss_pred             CcEEEEe-eEEEEEecCC-cEEEEECC-eEEEcCEEEEccCCCCcCC
Q 016820          134 GTQIFTE-TVSKVDFKSR-PFKVFTDS-KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~-~~~v~~~~-~~~~~d~lvlA~G~~~~~~  177 (382)
                      |++++.+ +|.+++.+++ .+.+.+++ .++.+|.||+|+|.+|+..
T Consensus       245 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  291 (490)
T 1fec_A          245 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQ  291 (490)
T ss_dssp             TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEESCT
T ss_pred             CCEEEeCCEEEEEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcCcc
Confidence            9999999 7999987653 36666644 4799999999999998864

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=98.90  E-value=1.4e-08  Score=98.48  Aligned_cols=54  Identities=22%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCc---EEEEECCe--EEEcC-EEEEccCCCC
Q 016820          121 DLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRP---FKVFTDSK--SVLAD-TVIVATGAVA  174 (382)
Q Consensus       121 ~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~---~~v~~~~~--~~~~d-~lvlA~G~~~  174 (382)
                      .+.+.+.+.+++.|++++.+ +|+++..+ ++.   +.+..+++  +++++ .||+|+|...
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            78889999999999999988 69998876 443   33444443  48895 9999999976

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.90  E-value=9.1e-09  Score=96.22  Aligned_cols=100  Identities=12%  Similarity=0.129  Sum_probs=80.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+++|+..                    .+.......++.+.+.+.+++.|+++
T Consensus       145 ~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------------------~~~~~~~~~~~~~~l~~~l~~~gv~i  204 (384)
T 2v3a_A          145 KRRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCE--------------------QVMPGLLHPAAAKAVQAGLEGLGVRF  204 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------SSSTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCc--------------------chhhcccCHHHHHHHHHHHHHcCCEE
Confidence            6799999999999999999999999999999410                    00011234678888889999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ +|.+++.+++.+.+..+ +.++.+|.||+|+|.+|+..
T Consensus       205 ~~~~~v~~i~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~~~  246 (384)
T 2v3a_A          205 HLGPVLASLKKAGEGLEAHLSDGEVIPCDLVVSAVGLRPRTE  246 (384)
T ss_dssp             EESCCEEEEEEETTEEEEEETTSCEEEESEEEECSCEEECCH
T ss_pred             EeCCEEEEEEecCCEEEEEECCCCEEECCEEEECcCCCcCHH
Confidence            999 69999887766666654 45799999999999998763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.90  E-value=8.8e-09  Score=99.57  Aligned_cols=101  Identities=17%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||+.|+++|..|++.|.+|+++++..    .             +    ......++.+.+.+.+++.|++
T Consensus       197 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~----~-------------~----l~~~d~~~~~~l~~~l~~~gV~  255 (491)
T 3urh_A          197 VPASMIVVGGGVIGLELGSVWARLGAKVTVVEFLD----T-------------I----LGGMDGEVAKQLQRMLTKQGID  255 (491)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS----S-------------S----SSSSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCEEEEEeccc----c-------------c----cccCCHHHHHHHHHHHHhCCCE
Confidence            46789999999999999999999999999999310    0             0    0123467888888999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC----C--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD----S--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~----~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+...    +  .++.+|.||+|+|.+|+...
T Consensus       256 v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~~~~  304 (491)
T 3urh_A          256 FKLGAKVTGAVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPSTDG  304 (491)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEECCTT
T ss_pred             EEECCeEEEEEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccCCCc
Confidence            9998 69999887766555442    3  46999999999999987753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.90  E-value=4.4e-09  Score=101.12  Aligned_cols=101  Identities=16%  Similarity=0.148  Sum_probs=80.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..    .            -+     ....+++.+.+.+.+++.|++
T Consensus       176 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~----~------------~l-----~~~~~~~~~~l~~~l~~~gv~  234 (470)
T 1dxl_A          176 IPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFAS----E------------IV-----PTMDAEIRKQFQRSLEKQGMK  234 (470)
T ss_dssp             CCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSS----S------------SS-----TTSCHHHHHHHHHHHHHSSCC
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCC----c------------cc-----ccccHHHHHHHHHHHHHcCCE
Confidence            45799999999999999999999999999999410    0            01     123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE----CC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT----DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~----~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.+.+..    ++  .++.+|.||+|+|.+|+...
T Consensus       235 i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~~~  283 (470)
T 1dxl_A          235 FKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPFTSG  283 (470)
T ss_dssp             EECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEECCTT
T ss_pred             EEeCCEEEEEEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcCCCC
Confidence            9998 7999987765555543    23  56999999999999987653

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=98.89  E-value=1.9e-08  Score=94.46  Aligned_cols=56  Identities=14%  Similarity=0.090  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+.+.+.+.+++.|++++.+ +|+++..+++. +.+.++++++.+|.||+|+|...
T Consensus       173 ~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          173 HDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKVALAGAGHS  230 (405)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCceEECCEEEECCchhH
Confidence            4478888888888999999987 79999877654 55777666899999999999864

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.88  E-value=8e-09  Score=100.59  Aligned_cols=98  Identities=11%  Similarity=0.153  Sum_probs=79.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF  138 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  138 (382)
                      ++++|||+|+.|+++|..|++.|.+|+++++..    .            .+     .....++.+.+.+.+++.|++++
T Consensus       215 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~----~------------~l-----~~~~~~~~~~l~~~l~~~GV~i~  273 (523)
T 1mo9_A          215 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRTE----P------------LK-----LIKDNETRAYVLDRMKEQGMEII  273 (523)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC----T------------TT-----TCCSHHHHHHHHHHHHHTTCEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEecC----c------------cc-----ccccHHHHHHHHHHHHhCCcEEE
Confidence            799999999999999999999999999999410    0            01     11346788889999999999999


Q ss_pred             Ee-eEEEEEecCCc----EEEEECCe--EEEcCEEEEccCCCCcCC
Q 016820          139 TE-TVSKVDFKSRP----FKVFTDSK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       139 ~~-~v~~i~~~~~~----~~v~~~~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      .+ +|++++.+++.    +.+.++++  ++.+|.||+|+|.+|+..
T Consensus       274 ~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~~  319 (523)
T 1mo9_A          274 SGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRSA  319 (523)
T ss_dssp             SSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECCH
T ss_pred             ECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCCc
Confidence            88 79999875544    66776555  799999999999998764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.88  E-value=1.1e-08  Score=98.57  Aligned_cols=101  Identities=19%  Similarity=0.195  Sum_probs=80.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..        .        .+     .....++.+.+.+.+++.|++
T Consensus       179 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------~--------~l-----~~~~~~~~~~l~~~l~~~Gv~  237 (476)
T 3lad_A          179 VPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMD--------K--------FL-----PAVDEQVAKEAQKILTKQGLK  237 (476)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------S--------SS-----TTSCHHHHHHHHHHHHHTTEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCcEEEEecCC--------C--------cC-----cccCHHHHHHHHHHHHhCCCE
Confidence            45789999999999999999999999999999410        0        01     123467888888999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-C---eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-S---KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~---~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+.+++.+++.+.+... +   .++.+|.||+|+|.+|+...
T Consensus       238 v~~~~~v~~i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~~~~  284 (476)
T 3lad_A          238 ILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPVTTD  284 (476)
T ss_dssp             EEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSCEEECCTT
T ss_pred             EEECCEEEEEEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCcccCCC
Confidence            9998 79999887766655442 2   46999999999999987753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.87  E-value=1.7e-08  Score=98.81  Aligned_cols=118  Identities=16%  Similarity=0.134  Sum_probs=77.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------------------------------eec
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------------------------------LTT  103 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------------------------------~~~  103 (382)
                      +..+||+|||||++|+++|..|++.|++|+|||+.........+.                                ...
T Consensus        24 ~~~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~  103 (549)
T 2r0c_A           24 PIETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHPRVGTIGPRSMELFRRWGVAKQIRTAGWPGDHPLDAAWV  103 (549)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSCCCCEECHHHHHHHHHTTCHHHHHTSSCCTTSBCCEEEE
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCChHHHHhhcCCcccccceEEe
Confidence            346899999999999999999999999999999743221111000                                000


Q ss_pred             C---C-Cc--ccCCC---------CC---CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC----C--
Q 016820          104 T---S-DV--ENFPG---------FP---QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD----S--  158 (382)
Q Consensus       104 ~---~-~~--~~~~~---------~~---~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~----~--  158 (382)
                      .   . ..  ..++.         .+   ..+....+.+.+.+.+.+.   ++.+ +|++++.+++.+++...    +  
T Consensus       104 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~---v~~~~~v~~~~~~~~~v~v~~~~~~~G~~  180 (549)
T 2r0c_A          104 TRVGGHEVYRIPLGTADTRATPEHTPEPDAICPQHWLAPLLAEAVGER---LRTRSRLDSFEQRDDHVRATITDLRTGAT  180 (549)
T ss_dssp             SSBTSCEEEEECCCBTTTSCCCSSCSSCCEECCHHHHHHHHHHHHGGG---EECSEEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccCCCceeEeecccccccccccCCCCCcccccCHHHHHHHHHHHHHHh---cccCcEEEEEEEeCCEEEEEEEECCCCCE
Confidence            0   0 00  00000         00   1234567778888888776   6666 79999888777766542    3  


Q ss_pred             eEEEcCEEEEccCCCCcC
Q 016820          159 KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       159 ~~~~~d~lvlA~G~~~~~  176 (382)
                      .++++|+||.|+|.++..
T Consensus       181 ~~i~a~~vVgADG~~S~v  198 (549)
T 2r0c_A          181 RAVHARYLVACDGASSPT  198 (549)
T ss_dssp             EEEEEEEEEECCCTTCHH
T ss_pred             EEEEeCEEEECCCCCcHH
Confidence            369999999999997643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=98.87  E-value=1.3e-08  Score=98.28  Aligned_cols=101  Identities=23%  Similarity=0.191  Sum_probs=80.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|+.|+++|..|++.|.+|+++++..                    .+.......++.+.+.+.+++.||+
T Consensus       193 ~~~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~GV~  252 (490)
T 2bc0_A          193 DIKRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVD--------------------TCLAGYYDRDLTDLMAKNMEEHGIQ  252 (490)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------STTTTTSCHHHHHHHHHHHHTTTCE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCeEEEEEccc--------------------chhhhHHHHHHHHHHHHHHHhCCeE
Confidence            46789999999999999999999999999999410                    0001123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++...+.+++.++.+|.||+|+|.+|+.+
T Consensus       253 i~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vi~a~G~~p~~~  294 (490)
T 2bc0_A          253 LAFGETVKEVAGNGKVEKIITDKNEYDVDMVILAVGFRPNTT  294 (490)
T ss_dssp             EEETCCEEEEECSSSCCEEEESSCEEECSEEEECCCEEECCG
T ss_pred             EEeCCEEEEEEcCCcEEEEEECCcEEECCEEEECCCCCcChH
Confidence            9998 6999986433223555777899999999999998765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.87  E-value=1.1e-08  Score=99.02  Aligned_cols=100  Identities=18%  Similarity=0.128  Sum_probs=79.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      ...+++|||+|+.|+++|..|+++   |.+|+++++..        .        .+     ....+++.+.+.+.+++.
T Consensus       190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~--------~--------~l-----~~~d~~~~~~l~~~l~~~  248 (495)
T 2wpf_A          190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNN--------L--------IL-----RGFDETIREEVTKQLTAN  248 (495)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSS--------S--------SC-----TTSCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCC--------c--------cc-----cccCHHHHHHHHHHHHhC
Confidence            457999999999999999999999   99999999410        0        01     113467888888999999


Q ss_pred             CcEEEEe-eEEEEEecCC-cEEEEEC-CeEEEcCEEEEccCCCCcCC
Q 016820          134 GTQIFTE-TVSKVDFKSR-PFKVFTD-SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~-~~~v~~~-~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ||+++.+ +|.+++.+++ .+.+.+. +.++.+|.||+|+|.+|+..
T Consensus       249 GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~~~  295 (495)
T 2wpf_A          249 GIEIMTNENPAKVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPRTN  295 (495)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCEEECCG
T ss_pred             CCEEEeCCEEEEEEEcCCceEEEEECCCcEEEcCEEEECCCCccccc
Confidence            9999999 7999987653 3556554 44799999999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.86  E-value=1.3e-08  Score=98.00  Aligned_cols=101  Identities=17%  Similarity=0.123  Sum_probs=79.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|+++|.+|+++++..                    . .......++.+.+.+.+++.|++
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------------------~-~l~~~d~~~~~~~~~~l~~~gv~  244 (478)
T 3dk9_A          186 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHD--------------------K-VLRSFDSMISTNCTEELENAGVE  244 (478)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------------------S-SCTTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCC--------------------c-cccccCHHHHHHHHHHHHHCCCE
Confidence            45789999999999999999999999999999310                    0 01123467888888999999999


Q ss_pred             EEEe-eEEEEEecCCc--EEEEECC--------eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP--FKVFTDS--------KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~--~~v~~~~--------~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+.+++.+++.  +.+...+        .++.+|.||+|+|.+|+...
T Consensus       245 i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~~~~  297 (478)
T 3dk9_A          245 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPNTKD  297 (478)
T ss_dssp             EETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEESCTT
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccCCCC
Confidence            9998 68899876544  5555432        56899999999999987753

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=98.86  E-value=1.9e-08  Score=96.99  Aligned_cols=101  Identities=24%  Similarity=0.261  Sum_probs=82.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..        .+        +     .....++.+.+.+.+++.|++
T Consensus       190 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~--------~~--------l-----~~~~~~~~~~l~~~l~~~Gv~  248 (484)
T 3o0h_A          190 LPKSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGD--------LI--------L-----RNFDYDLRQLLNDAMVAKGIS  248 (484)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------SS--------S-----TTSCHHHHHHHHHHHHHHTCE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHcCCeEEEEECCC--------cc--------c-----cccCHHHHHHHHHHHHHCCCE
Confidence            46799999999999999999999999999999410        00        1     112467888888888999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .|.+++.+++.+.+.+++ .++.+|.||+|+|.+|+...
T Consensus       249 i~~~~~V~~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~~~~  292 (484)
T 3o0h_A          249 IIYEATVSQVQSTENCYNVVLTNGQTICADRVMLATGRVPNTTG  292 (484)
T ss_dssp             EESSCCEEEEEECSSSEEEEETTSCEEEESEEEECCCEEECCTT
T ss_pred             EEeCCEEEEEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcCCCC
Confidence            9997 799998887777777654 47999999999999987654

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.86  E-value=1.9e-08  Score=91.29  Aligned_cols=115  Identities=19%  Similarity=0.244  Sum_probs=73.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecC-CCcc---------------cCC-----CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTT-SDVE---------------NFP-----GF  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~-~~~~---------------~~~-----~~  113 (382)
                      ..+||+|||||++|+++|+.|++.  |++|+|||+..    .+|+..... ....               ..+     .+
T Consensus        78 ~~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~----~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~  153 (344)
T 3jsk_A           78 AETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGV----APGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDY  153 (344)
T ss_dssp             HBCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSS----SCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSE
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCC----ccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCe
Confidence            468999999999999999999998  99999999632    222211100 0000               000     01


Q ss_pred             CCCCChHHHHHHHHHHHHH-cCcEEEEe-eEEEEEecC-----------------C--c---EEEEE-------------
Q 016820          114 PQGILGGDLMDRCRNQSLR-FGTQIFTE-TVSKVDFKS-----------------R--P---FKVFT-------------  156 (382)
Q Consensus       114 ~~~~~~~~~~~~~~~~~~~-~gi~~~~~-~v~~i~~~~-----------------~--~---~~v~~-------------  156 (382)
                      .......++.+.+.+.+.+ .+++++.+ .+.++..++                 +  .   +.+..             
T Consensus       154 ~~~~~~~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~  233 (344)
T 3jsk_A          154 VVVKHAALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAM  233 (344)
T ss_dssp             EEESCHHHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCC
T ss_pred             EEEecHHHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCccccc
Confidence            0111245667777777777 59999988 577775544                 1  1   11110             


Q ss_pred             CCeEEEcCEEEEccCCCCc
Q 016820          157 DSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       157 ~~~~~~~d~lvlA~G~~~~  175 (382)
                      +..++++++||+|||....
T Consensus       234 d~~~i~Ak~VV~ATG~~s~  252 (344)
T 3jsk_A          234 DPNTINAPVIISTTGHDGP  252 (344)
T ss_dssp             BCEEEECSEEEECCCSSSS
T ss_pred             CceEEEcCEEEECCCCCch
Confidence            1246999999999998653

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=98.84  E-value=3.2e-08  Score=97.34  Aligned_cols=115  Identities=30%  Similarity=0.363  Sum_probs=77.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc-------eecCCC-c---------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ-------LTTTSD-V---------------------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-------~~~~~~-~---------------------  107 (382)
                      ..+||+|||+|++|+++|..|++.|++|+|+|+..    ..|+.       +..... .                     
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~----~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g  200 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP----IPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGG  200 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSS----SSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHT
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCC----CCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhc
Confidence            45799999999999999999999999999999632    22221       100000 0                     


Q ss_pred             ---------------------------ccC------CCC--CC-----C--CChHHHHHHHHHHHHHcCcEEEEe-eEEE
Q 016820          108 ---------------------------ENF------PGF--PQ-----G--ILGGDLMDRCRNQSLRFGTQIFTE-TVSK  144 (382)
Q Consensus       108 ---------------------------~~~------~~~--~~-----~--~~~~~~~~~~~~~~~~~gi~~~~~-~v~~  144 (382)
                                                 ..+      .+.  +.     .  .....+...|.+.+++.|++++.+ +|++
T Consensus       201 ~~~~~~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~  280 (572)
T 1d4d_A          201 RNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVR  280 (572)
T ss_dssp             TTCSCHHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEE
T ss_pred             CCCCCHHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEE
Confidence                                       000      000  00     0  125678888999999999999988 6888


Q ss_pred             EEecC-Cc---EEEEE-CCe--EEEcCEEEEccCCCCc
Q 016820          145 VDFKS-RP---FKVFT-DSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       145 i~~~~-~~---~~v~~-~~~--~~~~d~lvlA~G~~~~  175 (382)
                      +..++ +.   +.+.. ++.  ++.+|.||+|+|..+.
T Consensus       281 l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~  318 (572)
T 1d4d_A          281 ILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  318 (572)
T ss_dssp             EEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             EEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCcc
Confidence            87655 43   34443 343  5899999999999764

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.84  E-value=1.6e-08  Score=96.64  Aligned_cols=101  Identities=16%  Similarity=0.142  Sum_probs=80.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..                    .+.......++.+.+.+.+++.|++
T Consensus       148 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~Gv~  207 (452)
T 2cdu_A          148 KAKTITIIGSGYIGAELAEAYSNQNYNVNLIDGHE--------------------RVLYKYFDKEFTDILAKDYEAHGVN  207 (452)
T ss_dssp             GCSEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS--------------------STTTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCC--------------------chhhhhhhhhHHHHHHHHHHHCCCE
Confidence            45789999999999999999999999999999410                    0001123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ +|.+++.+++.+. +..++.++.+|.||+|+|.+|+..
T Consensus       208 i~~~~~v~~i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~~~  250 (452)
T 2cdu_A          208 LVLGSKVAAFEEVDDEIITKTLDGKEIKSDIAILCIGFRPNTE  250 (452)
T ss_dssp             EEESSCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCG
T ss_pred             EEcCCeeEEEEcCCCeEEEEEeCCCEEECCEEEECcCCCCCHH
Confidence            9999 7999987555453 555677899999999999998765

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=98.83  E-value=5.1e-09  Score=98.64  Aligned_cols=56  Identities=20%  Similarity=0.319  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEE---------EEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVS---------KVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~---------~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+.|++++.+ +|+         ++..+++.+.+.++++++++|.||+|+|.++
T Consensus       171 ~~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~~~~v~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          171 PGSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVTNTHQIVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC-------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEeeCCeEEEEECCcEEECCEEEECCCccH
Confidence            3557788888888899999887 688         7776666676766777899999999999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=98.83  E-value=1.3e-08  Score=97.96  Aligned_cols=100  Identities=23%  Similarity=0.160  Sum_probs=80.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|++|+++|..|++.|.+|+++++..    .+            .     .....++.+.+.+.+++.|++
T Consensus       185 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~----~~------------l-----~~~~~~~~~~l~~~l~~~Gv~  243 (480)
T 3cgb_A          185 KVEDVTIIGGGAIGLEMAETFVELGKKVRMIERND----HI------------G-----TIYDGDMAEYIYKEADKHHIE  243 (480)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHTTCEEEEECCGG----GT------------T-----SSSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC----ch------------h-----hcCCHHHHHHHHHHHHHcCcE
Confidence            46899999999999999999999999999999420    00            0     112467888889999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++...+.++++++.+|.||+|+|.+|+..
T Consensus       244 i~~~~~v~~i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~~~  285 (480)
T 3cgb_A          244 ILTNENVKAFKGNERVEAVETDKGTYKADLVLVSVGVKPNTD  285 (480)
T ss_dssp             EECSCCEEEEEESSBEEEEEETTEEEECSEEEECSCEEESCG
T ss_pred             EEcCCEEEEEEcCCcEEEEEECCCEEEcCEEEECcCCCcChH
Confidence            9988 6999987643334666777899999999999998764

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=98.82  E-value=4e-08  Score=95.15  Aligned_cols=57  Identities=19%  Similarity=0.149  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEE----CCe--EEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFT----DSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~----~~~--~~~~d~lvlA~G~~~  174 (382)
                      .+..+...+.+.+.+.|++++.+ +|+++..+++.+.+.+    ++.  ++++|.||+|+|.+.
T Consensus       147 ~~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s  210 (501)
T 2qcu_A          147 DDARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGKKYSWQARGLVNATGPWV  210 (501)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCCEEEEEESCEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCCEEEEECCEEEECCChhH
Confidence            35667888888888999999987 7999988776566655    343  699999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.81  E-value=1.9e-08  Score=96.47  Aligned_cols=101  Identities=18%  Similarity=0.145  Sum_probs=81.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..+++.|.+|+++++..        .        .+     .....++.+.+.+.+++.|++
T Consensus       169 ~~~~v~ViGgG~~g~e~A~~l~~~g~~Vt~v~~~~--------~--------~l-----~~~~~~~~~~l~~~l~~~Gv~  227 (463)
T 4dna_A          169 LPESILIAGGGYIAVEFANIFHGLGVKTTLIYRGK--------E--------IL-----SRFDQDMRRGLHAAMEEKGIR  227 (463)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------S--------SS-----TTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCC--------c--------cc-----cccCHHHHHHHHHHHHHCCCE
Confidence            46789999999999999999999999999999410        0        01     123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCc-EEEE-ECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP-FKVF-TDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~-~~v~-~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .|.+++.+++. +.+. ++++++.+|.||+|+|.+|+...
T Consensus       228 i~~~~~v~~i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~~p~~~~  272 (463)
T 4dna_A          228 ILCEDIIQSVSADADGRRVATTMKHGEIVADQVMLALGRMPNTNG  272 (463)
T ss_dssp             EECSCCEEEEEECTTSCEEEEESSSCEEEESEEEECSCEEESCTT
T ss_pred             EECCCEEEEEEEcCCCEEEEEEcCCCeEEeCEEEEeeCcccCCCC
Confidence            9998 69999876544 5666 65555999999999999987654

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.81  E-value=5.6e-08  Score=94.72  Aligned_cols=59  Identities=15%  Similarity=0.149  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHHH-cCcEEEEeeEEEEEecCCc--EEEEEC-CeEEEcCEEEEccCCCCcC
Q 016820          118 LGGDLMDRCRNQSLR-FGTQIFTETVSKVDFKSRP--FKVFTD-SKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~-~gi~~~~~~v~~i~~~~~~--~~v~~~-~~~~~~d~lvlA~G~~~~~  176 (382)
                      ....+.+.+.+.+.+ .|++++.++|++++.+++.  +.+.+. ++++++|+||.|+|.++..
T Consensus       173 ~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S~~  235 (526)
T 2pyx_A          173 NAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKSLL  235 (526)
T ss_dssp             CHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGCCC
T ss_pred             cHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            456778888888888 8999999999999876443  345553 3579999999999997755

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=98.80  E-value=2.9e-08  Score=97.00  Aligned_cols=58  Identities=17%  Similarity=0.178  Sum_probs=45.5

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCc--EEEEECCe-EEEcCEEEEccCCCCcC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRP--FKVFTDSK-SVLADTVIVATGAVAKK  176 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~--~~v~~~~~-~~~~d~lvlA~G~~~~~  176 (382)
                      ...+...+.+.+.+.|++++.++|++++.+++.  +.+.++++ ++.+|.||.|+|.++..
T Consensus       164 ~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s~~  224 (538)
T 2aqj_A          164 AHLVADFLKRWAVERGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRGLL  224 (538)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGCCC
T ss_pred             HHHHHHHHHHHHHHCCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCchhh
Confidence            366778888888889999998899999875443  45665544 79999999999997655

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.80  E-value=1.9e-08  Score=97.16  Aligned_cols=100  Identities=18%  Similarity=0.149  Sum_probs=77.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+++++.         .        .+     .....++.+.+.+.+++.||+
T Consensus       184 ~~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~---------~--------~l-----~~~d~~~~~~l~~~l~~~gv~  241 (488)
T 3dgz_A          184 SPGKTLVVGASYVALECAGFLTGIGLDTTVMMRS---------I--------PL-----RGFDQQMSSLVTEHMESHGTQ  241 (488)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS---------C--------SS-----TTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCCHHHHHHHHHHHHcCCceEEEEcC---------c--------cc-----ccCCHHHHHHHHHHHHHCCCE
Confidence            4578999999999999999999999999999931         0        01     112467888899999999999


Q ss_pred             EEEe-eEEEEEec-CCcEEEEE-C---Ce--EEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFK-SRPFKVFT-D---SK--SVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~-~~~~~v~~-~---~~--~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..+... ++.+.+.. +   +.  ++.+|.||+|+|.+|+...
T Consensus       242 ~~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p~~~~  291 (488)
T 3dgz_A          242 FLKGCVPSHIKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVPETRT  291 (488)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEESCGG
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCcccCc
Confidence            9998 68888764 33344433 1   33  3789999999999987653

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.80  E-value=2.4e-08  Score=97.16  Aligned_cols=100  Identities=17%  Similarity=0.144  Sum_probs=75.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|+++|.+|+++++.         .        .+     .....++.+.+.+.+++.||+
T Consensus       209 ~~~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~---------~--------~l-----~~~d~~~~~~~~~~l~~~GV~  266 (519)
T 3qfa_A          209 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS---------I--------LL-----RGFDQDMANKIGEHMEEHGIK  266 (519)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS---------C--------SS-----TTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCeEEEEecc---------c--------cc-----ccCCHHHHHHHHHHHHHCCCE
Confidence            4568999999999999999999999999999930         0        01     112467888888999999999


Q ss_pred             EEEe-eEEEEEecC----CcEEEE--E-CC---eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKS----RPFKVF--T-DS---KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~----~~~~v~--~-~~---~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+..+...+    +.+.+.  . ++   .++.+|.||+|+|.+|+...
T Consensus       267 v~~~~~v~~v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~~~~  319 (519)
T 3qfa_A          267 FIRQFVPIKVEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDACTRK  319 (519)
T ss_dssp             EEESEEEEEEEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEESCSS
T ss_pred             EEeCCeEEEEEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCcccCCC
Confidence            9988 566665432    333332  2 33   24789999999999987654

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=98.79  E-value=4.7e-08  Score=92.34  Aligned_cols=100  Identities=21%  Similarity=0.236  Sum_probs=80.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+++++.                    +.+.......++.+.+.+.+++.|+++
T Consensus       152 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~--------------------~~~l~~~~~~~~~~~l~~~l~~~GV~i  211 (415)
T 3lxd_A          152 AKNAVVIGGGYIGLEAAAVLTKFGVNVTLLEAL--------------------PRVLARVAGEALSEFYQAEHRAHGVDL  211 (415)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS--------------------SSTTTTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCeEEEEecC--------------------CchhhhhcCHHHHHHHHHHHHhCCCEE
Confidence            578999999999999999999999999999941                    001112235788889999999999999


Q ss_pred             EEe-eEEEEEecCCcE-EEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPF-KVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .|.+++.+++.+ .+.+ ++.++.+|.||+|+|.+|+..
T Consensus       212 ~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~~~  254 (415)
T 3lxd_A          212 RTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIGIVPCVG  254 (415)
T ss_dssp             EETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSCCEESCH
T ss_pred             EECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCCCccChH
Confidence            998 699998776554 4555 455799999999999998763

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.79  E-value=1.2e-08  Score=94.73  Aligned_cols=94  Identities=21%  Similarity=0.201  Sum_probs=74.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|++|+++|..|++.|.+|+++++..                 .+  .+   ..+++.+.+.+.+++.|+++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~-----------------~~--l~---~~~~~~~~l~~~l~~~gV~i  200 (367)
T 1xhc_A          143 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA-----------------MF--LG---LDEELSNMIKDMLEETGVKF  200 (367)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS-----------------CC--TT---CCHHHHHHHHHHHHHTTEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCC-----------------ee--cc---CCHHHHHHHHHHHHHCCCEE
Confidence            3789999999999999999999999999999410                 00  01   34678888999999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ ++.+++  .+.  +..+++++.+|.||+|+|.+|+..
T Consensus       201 ~~~~~v~~i~--~~~--v~~~~g~i~~D~vi~a~G~~p~~~  237 (367)
T 1xhc_A          201 FLNSELLEAN--EEG--VLTNSGFIEGKVKICAIGIVPNVD  237 (367)
T ss_dssp             ECSCCEEEEC--SSE--EEETTEEEECSCEEEECCEEECCH
T ss_pred             EcCCEEEEEE--eeE--EEECCCEEEcCEEEECcCCCcCHH
Confidence            998 688887  233  333444499999999999998763

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.79  E-value=1.5e-08  Score=97.62  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=77.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||+|+.|+++|..|++.|.+|+++++.         .        .++     ....++.+.+.+.+++.|++
T Consensus       186 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~---------~--------~l~-----~~d~~~~~~l~~~l~~~Gv~  243 (483)
T 3dgh_A          186 EPGKTLVVGAGYIGLECAGFLKGLGYEPTVMVRS---------I--------VLR-----GFDQQMAELVAASMEERGIP  243 (483)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS---------C--------SST-----TSCHHHHHHHHHHHHHTTCC
T ss_pred             cCCcEEEECCCHHHHHHHHHHHHcCCEEEEEeCC---------C--------CCc-----ccCHHHHHHHHHHHHhCCCE
Confidence            4578999999999999999999999999999931         0        011     12467888889999999999


Q ss_pred             EEEe-eEEEEEecCC-cEEEEE-CC-----eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSR-PFKVFT-DS-----KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~-~~~v~~-~~-----~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.+++ .+.+.. ++     .++.+|.||+|+|.+|+..
T Consensus       244 i~~~~~v~~i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p~~~  292 (483)
T 3dgh_A          244 FLRKTVPLSVEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKGLVD  292 (483)
T ss_dssp             EEETEEEEEEEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEECCG
T ss_pred             EEeCCEEEEEEEcCCCcEEEEEecCCCCceeEEEcCEEEECcccccCcC
Confidence            9998 6888987543 344433 21     2689999999999998764

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=98.78  E-value=5.1e-08  Score=95.59  Aligned_cols=57  Identities=14%  Similarity=0.165  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEEC----C--eEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTD----S--KSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~----~--~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+.+.|++++.+ +|+++..+++.+ .+...    +  ..++++.||+|+|.+.
T Consensus       168 d~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          168 DDARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            34567777888888999999997 799998877653 24332    2  4699999999999864

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=98.78  E-value=5.1e-08  Score=92.26  Aligned_cols=51  Identities=25%  Similarity=0.246  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCC
Q 016820          123 MDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       123 ~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~  173 (382)
                      .+.+.+.+.+.|++++.+ .|++|..+++.+. +.++++++.+|.||+|+|..
T Consensus       199 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~g~~~~ad~VV~a~~~~  251 (425)
T 3ka7_A          199 IDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGHA  251 (425)
T ss_dssp             HHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEECCEEEECCEEEECCCHH
Confidence            344455566779999988 6999998887775 77788889999999999984

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=98.77  E-value=2.6e-08  Score=94.23  Aligned_cols=48  Identities=15%  Similarity=0.195  Sum_probs=39.1

Q ss_pred             HHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCC
Q 016820          125 RCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       125 ~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~  173 (382)
                      .+.+.+++.|++++.+ .|++|+.+++.+ +.++++++.+|.||+|+|..
T Consensus       194 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~v-V~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          194 ELERIIMENKGKILTRKEVVEINIEEKKV-YTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHHHHHHTTTCEEESSCCEEEEETTTTEE-EETTCCEEECSEEEECSCHH
T ss_pred             HHHHHHHHCCCEEEcCCeEEEEEEECCEE-EEeCCcEEEeCEEEECCCHH
Confidence            3444455678999998 699999888888 77777889999999999974

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.76  E-value=4.9e-08  Score=88.15  Aligned_cols=115  Identities=21%  Similarity=0.319  Sum_probs=72.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCc-ceecC---------CCcccC---CCCC-------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGG-QLTTT---------SDVENF---PGFP-------  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg-~~~~~---------~~~~~~---~~~~-------  114 (382)
                      ..+||+|||||++|+++|+.|++.  |++|+|+|+.    ...|+ .+...         .....+   .+.+       
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~----~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~  139 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESS----VAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDY  139 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS----SSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSE
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecC----ccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCe
Confidence            456999999999999999999999  9999999953    23332 11000         000000   0000       


Q ss_pred             -CCCChHHHHHHHHHHHHHc-CcEEEEe-eEEEEEecC----C--cEE-EEE---------------CCeEEEc------
Q 016820          115 -QGILGGDLMDRCRNQSLRF-GTQIFTE-TVSKVDFKS----R--PFK-VFT---------------DSKSVLA------  163 (382)
Q Consensus       115 -~~~~~~~~~~~~~~~~~~~-gi~~~~~-~v~~i~~~~----~--~~~-v~~---------------~~~~~~~------  163 (382)
                       ......++...+.+.+.+. |++++.+ +|.++..+.    +  .+. +..               +..++.+      
T Consensus       140 ~~~~~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~  219 (326)
T 2gjc_A          140 VVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKND  219 (326)
T ss_dssp             EEESCHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSS
T ss_pred             EEEcchHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccc
Confidence             0113466777787777775 9999877 688886652    2  221 211               2345889      


Q ss_pred             ---------CEEEEccCCCCc
Q 016820          164 ---------DTVIVATGAVAK  175 (382)
Q Consensus       164 ---------d~lvlA~G~~~~  175 (382)
                               +.||.|||....
T Consensus       220 ~~~~~~~~~~~VV~ATG~~~~  240 (326)
T 2gjc_A          220 GTRDLSQKHGVILSTTGHDGP  240 (326)
T ss_dssp             SCCCSSTTCCEEEECCCCC--
T ss_pred             ccccccccCCEEEECcCCCch
Confidence                     999999998653

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.75  E-value=4.9e-08  Score=94.82  Aligned_cols=60  Identities=15%  Similarity=0.139  Sum_probs=47.7

Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEeeEEEEEecCCc--EEEEECCe-EEEcCEEEEccCCCCcC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRP--FKVFTDSK-SVLADTVIVATGAVAKK  176 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~--~~v~~~~~-~~~~d~lvlA~G~~~~~  176 (382)
                      +....+.+.+.+.+.+.|++++.++|+++..+++.  +.+.++++ ++++|.||.|+|.++..
T Consensus       170 ~~~~~l~~~L~~~a~~~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S~~  232 (511)
T 2weu_A          170 FDADEVARYLSEYAIARGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRGLL  232 (511)
T ss_dssp             ECHHHHHHHHHHHHHHTTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGCCC
T ss_pred             EcHHHHHHHHHHHHHHCCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcchHH
Confidence            35678888898888889999998899999875443  55665544 79999999999997655

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=98.75  E-value=5.8e-08  Score=91.50  Aligned_cols=96  Identities=22%  Similarity=0.222  Sum_probs=76.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||+|+.|+++|..|++.|.+|+++++..                    .........++.+.+.+.+++.|+++
T Consensus       145 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~GV~i  204 (408)
T 2gqw_A          145 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP--------------------RLMSRAAPATLADFVARYHAAQGVDL  204 (408)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------SSSTTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC--------------------cccccccCHHHHHHHHHHHHHcCcEE
Confidence            5789999999999999999999999999999410                    00011234678888889999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ ++.+++ + +  .+.. ++.++.+|.||+|+|.+|+..
T Consensus       205 ~~~~~v~~i~-~-~--~v~~~~g~~i~~D~vi~a~G~~p~~~  242 (408)
T 2gqw_A          205 RFERSVTGSV-D-G--VVLLDDGTRIAADMVVVGIGVLANDA  242 (408)
T ss_dssp             EESCCEEEEE-T-T--EEEETTSCEEECSEEEECSCEEECCH
T ss_pred             EeCCEEEEEE-C-C--EEEECCCCEEEcCEEEECcCCCccHH
Confidence            999 799998 3 3  3333 456799999999999998753

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=98.73  E-value=2.3e-08  Score=94.26  Aligned_cols=100  Identities=21%  Similarity=0.246  Sum_probs=78.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+++++.    .                .+.......++.+.+.+.+++.|+++
T Consensus       143 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtvv~~~----~----------------~~l~~~~~~~~~~~l~~~l~~~GV~i  202 (410)
T 3ef6_A          143 ATRLLIVGGGLIGCEVATTARKLGLSVTILEAG----D----------------ELLVRVLGRRIGAWLRGLLTELGVQV  202 (410)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----S----------------SSSHHHHCHHHHHHHHHHHHHHTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEecC----C----------------ccchhhcCHHHHHHHHHHHHHCCCEE
Confidence            578999999999999999999999999999931    0                00000123577888888899999999


Q ss_pred             EEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++.+++...+.+ ++.++.+|.||+|+|.+|+..
T Consensus       203 ~~~~~v~~i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~~~  244 (410)
T 3ef6_A          203 ELGTGVVGFSGEGQLEQVMASDGRSFVADSALICVGAEPADQ  244 (410)
T ss_dssp             ECSCCEEEEECSSSCCEEEETTSCEEECSEEEECSCEEECCH
T ss_pred             EeCCEEEEEeccCcEEEEEECCCCEEEcCEEEEeeCCeecHH
Confidence            988 6999987665445555 456799999999999998753

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.73  E-value=6.6e-08  Score=90.97  Aligned_cols=99  Identities=17%  Similarity=0.222  Sum_probs=79.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|.+.|.+|+++++.                    +.+.......++.+.+.+.+++.|+++
T Consensus       142 ~~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~--------------------~~~~~~~~~~~~~~~l~~~l~~~GV~i  201 (404)
T 3fg2_P          142 KKHVVVIGAGFIGLEFAATARAKGLEVDVVELA--------------------PRVMARVVTPEISSYFHDRHSGAGIRM  201 (404)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS--------------------SSTTTTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC--------------------CcchhhccCHHHHHHHHHHHHhCCcEE
Confidence            578999999999999999999999999999941                    001112234678889999999999999


Q ss_pred             EEe-eEEEEEecCCcE-EEEE-CCeEEEcCEEEEccCCCCcC
Q 016820          138 FTE-TVSKVDFKSRPF-KVFT-DSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~-~v~~-~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +.+ .|.+++.+++.+ .+.+ ++.++.+|.||+|+|.+|+.
T Consensus       202 ~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~~  243 (404)
T 3fg2_P          202 HYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPNV  243 (404)
T ss_dssp             ECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCCEEECC
T ss_pred             EECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcCCccCH
Confidence            998 799998776544 3555 44579999999999998876

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.72  E-value=7.4e-08  Score=91.42  Aligned_cols=100  Identities=18%  Similarity=0.224  Sum_probs=78.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||+|+.|+++|..|++.|.+|+++++..                    .........++.+.+.+.+++.|+++
T Consensus       149 ~~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~GV~i  208 (431)
T 1q1r_A          149 DNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA--------------------RVLERVTAPPVSAFYEHLHREAGVDI  208 (431)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------------------STTTTTSCHHHHHHHHHHHHHHTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCC--------------------ccccchhhHHHHHHHHHHHHhCCeEE
Confidence            5789999999999999999999999999999410                    00011234678888888889999999


Q ss_pred             EEe-eEEEEEe--cCCcE-EEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDF--KSRPF-KVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~--~~~~~-~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++.  +++.+ .+.. ++.++.+|.||+|+|.+|+..
T Consensus       209 ~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~~~  253 (431)
T 1q1r_A          209 RTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIPNCE  253 (431)
T ss_dssp             ECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCCEEECCH
T ss_pred             EeCCEEEEEEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCcCcc
Confidence            998 7999986  44444 4555 455799999999999988753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.70  E-value=9e-08  Score=91.97  Aligned_cols=100  Identities=19%  Similarity=0.196  Sum_probs=80.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++++|||+|+.|+++|..|++. |.+|+++++..                    .+.......++.+.+.+.+++.|++
T Consensus       159 ~~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~GV~  218 (472)
T 3iwa_A          159 VSKAVIVGGGFIGLEMAVSLADMWGIDTTVVELAD--------------------QIMPGFTSKSLSQMLRHDLEKNDVV  218 (472)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSS--------------------SSSTTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccC--------------------cccccccCHHHHHHHHHHHHhcCCE
Confidence            57899999999999999999999 99999999410                    0001123467888899999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ +|.+++.+++.+.+.. ++.++.+|.||+|+|.+|+..
T Consensus       219 i~~~~~v~~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~~~  261 (472)
T 3iwa_A          219 VHTGEKVVRLEGENGKVARVITDKRTLDADLVILAAGVSPNTQ  261 (472)
T ss_dssp             EECSCCEEEEEESSSBEEEEEESSCEEECSEEEECSCEEECCH
T ss_pred             EEeCCEEEEEEccCCeEEEEEeCCCEEEcCEEEECCCCCcCHH
Confidence            9998 7999988666665544 556799999999999988753

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.70  E-value=6.3e-08  Score=96.51  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=80.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH-cCCCeEEEecccCCCCCCCc-c-----------------------------eecC-
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGWMANDIAPGG-Q-----------------------------LTTT-  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~~~~~~~~gg-~-----------------------------~~~~-  104 (382)
                      ..+||+|||||++|+++|..|++ .|++|+|||+.........+ .                             +... 
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~~~g~a~~l~~~t~e~l~~lGl~~~~~~~~~~~~~~~~~~~~  110 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELGQADGIACRTMEMFEAFEFADSILKEACWINDVTFWKPD  110 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCCSSCSCCEECHHHHHHHHHTTCHHHHHHHSEEECEEEEEEEC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCCCceeeeCHHHHHHHHHcCcHHHHHHhcccccceEEECCC
Confidence            35899999999999999999999 99999999974322111000 0                             0000 


Q ss_pred             ----CCcc---cCC----C---CC-CCCChHHHHHHHHHHHHHcCc--EEEEe-eEEEEEecCC----cEEEEE------
Q 016820          105 ----SDVE---NFP----G---FP-QGILGGDLMDRCRNQSLRFGT--QIFTE-TVSKVDFKSR----PFKVFT------  156 (382)
Q Consensus       105 ----~~~~---~~~----~---~~-~~~~~~~~~~~~~~~~~~~gi--~~~~~-~v~~i~~~~~----~~~v~~------  156 (382)
                          ....   .++    .   .+ ..+....+.+.|.+.+.+.|+  +++.+ +|+++..+++    .+.+..      
T Consensus       111 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~q~~l~~~L~~~a~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~  190 (639)
T 2dkh_A          111 PGQPGRIARHGRVQDTEDGLSEFPHVILNQARVHDHYLERMRNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAA  190 (639)
T ss_dssp             TTSTTCEEEEEEEESSCTTSCSSCEEECCHHHHHHHHHHHHHHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGG
T ss_pred             CCCCcceEeecccCcccCCCCCCceEeeCHHHHHHHHHHHHHhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEecccc
Confidence                0000   000    0   00 124567888899999999976  88887 6889887652    455543      


Q ss_pred             -CC--eEEEcCEEEEccCCCCcC
Q 016820          157 -DS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       157 -~~--~~~~~d~lvlA~G~~~~~  176 (382)
                       ++  .++++|+||.|+|.++..
T Consensus       191 ~~G~~~~i~a~~vVgADG~~S~v  213 (639)
T 2dkh_A          191 HAGQIETVQARYVVGCDGARSNV  213 (639)
T ss_dssp             GTTCEEEEEEEEEEECCCTTCHH
T ss_pred             CCCCeEEEEeCEEEECCCcchHH
Confidence             23  469999999999997643

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.70  E-value=1.5e-07  Score=92.11  Aligned_cols=60  Identities=17%  Similarity=0.064  Sum_probs=47.1

Q ss_pred             CChHHHHHHHHHHHHHc-CcEEEEeeEEEEEecCCc--EEEEECC-eEEEcCEEEEccCCCCcC
Q 016820          117 ILGGDLMDRCRNQSLRF-GTQIFTETVSKVDFKSRP--FKVFTDS-KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~-gi~~~~~~v~~i~~~~~~--~~v~~~~-~~~~~d~lvlA~G~~~~~  176 (382)
                      +....+.+.+.+.+.+. |++++.++|++++.+++.  +.+.+.+ .++.+|.||.|+|.++..
T Consensus       191 ~~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S~~  254 (550)
T 2e4g_A          191 FDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRGLL  254 (550)
T ss_dssp             ECHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGCCC
T ss_pred             EcHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCchhh
Confidence            34567888899988888 999998899999875443  4566544 469999999999997655

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.70  E-value=4.7e-08  Score=91.88  Aligned_cols=115  Identities=23%  Similarity=0.265  Sum_probs=69.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCC-CCcceecCC--------------------------CcccC-
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIA-PGGQLTTTS--------------------------DVENF-  110 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~-~gg~~~~~~--------------------------~~~~~-  110 (382)
                      ++|+|||||++|+++|..|++.|++|+|+|+....... .|..+....                          ....+ 
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~~~~~G~~i~l~~~~~~~L~~lg~~~~~~~~~~~~~~~~~~~~~~   81 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAASSILPGYGIHINSFGKQALQECLPAENWLAFEEASRYIGGQSRFY   81 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCSSCCCCEEEECHHHHHHHHHHSCHHHHHHHHHHCEEECCCCEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCCcCCCceEEeeCHHHHHHHHHcCChHHHHHhhhhhcccCcceeEe
Confidence            57999999999999999999999999999975332222 232211000                          00000 


Q ss_pred             C----------CC-C----------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecC-CcEEEEE-CCeEEEcCEE
Q 016820          111 P----------GF-P----------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKS-RPFKVFT-DSKSVLADTV  166 (382)
Q Consensus       111 ~----------~~-~----------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~-~~~~v~~-~~~~~~~d~l  166 (382)
                      .          .. +          ..+...++.+.+.   +..+.++..+ ++++++..+ +.+++.. ++.++++|+|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~L~~~L~---~~~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlv  158 (412)
T 4hb9_A           82 NERMRLLAVHGGISPMAGKIISEQRLSISRTELKEILN---KGLANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVL  158 (412)
T ss_dssp             CTTSCEEEC--------------CEEEEEHHHHHHHHH---TTCTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEE
T ss_pred             cCCcceecccCCccccccccccccceEeeHHHHHHHHH---hhccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEE
Confidence            0          00 0          0011223333332   2334456667 688887644 4577766 4556999999


Q ss_pred             EEccCCCCcC
Q 016820          167 IVATGAVAKK  176 (382)
Q Consensus       167 vlA~G~~~~~  176 (382)
                      |-|.|.++..
T Consensus       159 VgADG~~S~v  168 (412)
T 4hb9_A          159 VGADGSNSKV  168 (412)
T ss_dssp             EECCCTTCHH
T ss_pred             EECCCCCcch
Confidence            9999997643

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.67  E-value=1.3e-07  Score=90.24  Aligned_cols=99  Identities=20%  Similarity=0.134  Sum_probs=78.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+++++..                    .+......+++.+.+.+.+++. +++
T Consensus       148 ~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~~~~~~~~l~~~l~~~-v~i  206 (449)
T 3kd9_A          148 VENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGE--------------------RVLRRSFDKEVTDILEEKLKKH-VNL  206 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------STTTTTSCHHHHHHHHHHHTTT-SEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC--------------------ccchhhcCHHHHHHHHHHHHhC-cEE
Confidence            4689999999999999999999999999999410                    0001113467888888888888 999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.+++.+++...+..++.++.+|.||+|+|.+|+..
T Consensus       207 ~~~~~v~~i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p~~~  247 (449)
T 3kd9_A          207 RLQEITMKIEGEERVEKVVTDAGEYKAELVILATGIKPNIE  247 (449)
T ss_dssp             EESCCEEEEECSSSCCEEEETTEEEECSEEEECSCEEECCH
T ss_pred             EeCCeEEEEeccCcEEEEEeCCCEEECCEEEEeeCCccCHH
Confidence            988 6888886653334566778899999999999998753

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=98.67  E-value=5.9e-08  Score=92.23  Aligned_cols=96  Identities=13%  Similarity=0.130  Sum_probs=74.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+++|||||+.|+++|..++++|.+|+|+++.    .    .         +    ......++.+.+.+.+++.||++
T Consensus       147 ~~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~----~----~---------l----l~~~d~~~~~~~~~~l~~~gV~i  205 (437)
T 4eqs_A          147 VDKVLVVGAGYVSLEVLENLYERGLHPTLIHRS----D----K---------I----NKLMDADMNQPILDELDKREIPY  205 (437)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEEESS----S----C---------C----STTSCGGGGHHHHHHHHHTTCCE
T ss_pred             CcEEEEECCccchhhhHHHHHhcCCcceeeeee----c----c---------c----cccccchhHHHHHHHhhccceEE
Confidence            568999999999999999999999999999941    0    0         0    11223567778888889999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ +|..++.  +.+.+ .++.++.+|.|++|+|.+|+..
T Consensus       206 ~~~~~v~~~~~--~~v~~-~~g~~~~~D~vl~a~G~~Pn~~  243 (437)
T 4eqs_A          206 RLNEEINAING--NEITF-KSGKVEHYDMIIEGVGTHPNSK  243 (437)
T ss_dssp             EESCCEEEEET--TEEEE-TTSCEEECSEEEECCCEEESCG
T ss_pred             EeccEEEEecC--Ceeee-cCCeEEeeeeEEEEeceecCcH
Confidence            999 6887763  33333 3566799999999999998764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.67  E-value=1.3e-07  Score=93.06  Aligned_cols=100  Identities=12%  Similarity=0.103  Sum_probs=78.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|+.|+++|..|++.|.+|+++++..                    .+ ......++.+.+.+.+++.|++
T Consensus       150 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------------------~~-l~~~~~~~~~~l~~~l~~~GV~  208 (565)
T 3ntd_A          150 NVEHATVVGGGFIGLEMMESLHHLGIKTTLLELAD--------------------QV-MTPVDREMAGFAHQAIRDQGVD  208 (565)
T ss_dssp             TCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS--------------------SS-CTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCcEEEEEcCC--------------------cc-chhcCHHHHHHHHHHHHHCCCE
Confidence            35689999999999999999999999999999410                    00 1123467888888889999999


Q ss_pred             EEEe-eEEEEEe-------------------cCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDF-------------------KSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~-------------------~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.                   .++.+.+.. ++.++.+|.||+|+|.+|+..
T Consensus       209 i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~~~  270 (565)
T 3ntd_A          209 LRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPETQ  270 (565)
T ss_dssp             EEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEECCH
T ss_pred             EEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccchH
Confidence            9998 6888886                   344555554 455799999999999998753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=98.65  E-value=2.1e-08  Score=97.31  Aligned_cols=40  Identities=25%  Similarity=0.441  Sum_probs=34.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQ  100 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~  100 (382)
                      ..+||+|||||++||+||+.|++. |++|+|+|    +...+||.
T Consensus         9 ~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE----~~~~~GG~   49 (513)
T 4gde_A            9 ISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVD----SNETPGGL   49 (513)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEE----SSSSCCGG
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEE----CCCCCcCC
Confidence            468999999999999999999885 99999999    44555554

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.64  E-value=1.9e-07  Score=92.19  Aligned_cols=119  Identities=25%  Similarity=0.339  Sum_probs=77.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCC----CCCCcceecCC----------------Cc-------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMAND----IAPGGQLTTTS----------------DV-------  107 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~----~~~gg~~~~~~----------------~~-------  107 (382)
                      ..+||+|||||++|+++|+.|++.|  .+|+|||+.....    ...||......                ..       
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~~G~~~~V~vlEk~~~~~~~s~~a~GGi~~~~~~~ds~~~~~~d~~~~g~~~~d~~~v   83 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHTVAAEGGSAAVAQDHDSFEYHFHDTVAGGDWLCEQDVV   83 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGGGGCCSCEECCCSTTCCHHHHHHHHHHHTTTCSCHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhcCCCCcEEEEeCCCCCCChHHHhcCccEEeCCCCCCHHHHHHHHHHhcCCCCCHHHH
Confidence            4589999999999999999999999  9999999742110    01122110000                00       


Q ss_pred             ------------------ccC-------------CCCC-------CCCChHHHHHHHHHHHHHcC-cEEEEe-eEEEEEe
Q 016820          108 ------------------ENF-------------PGFP-------QGILGGDLMDRCRNQSLRFG-TQIFTE-TVSKVDF  147 (382)
Q Consensus       108 ------------------~~~-------------~~~~-------~~~~~~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~  147 (382)
                                        ..|             .+..       ....+..+...+.+.+.+.+ ++++.+ .|+++..
T Consensus        84 ~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~r~~~~~d~tg~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~  163 (602)
T 1kf6_A           84 DYFVHHCPTEMTQLELWGCPWSRRPDGSVNVRRFGGMKIERTWFAADKTGFHMLHTLFQTSLQFPQIQRFDEHFVLDILV  163 (602)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCCCBCTTSSBCCBCCTTCSSCCEECSTTCHHHHHHHHHHHHHTTCTTEEEEETEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccCCCCcccccccCCccCCeEEEcCCCCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEE
Confidence                              000             0000       00124578888888888888 999988 6888877


Q ss_pred             cCCc---EEEEE--CCe--EEEcCEEEEccCCCCc
Q 016820          148 KSRP---FKVFT--DSK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       148 ~~~~---~~v~~--~~~--~~~~d~lvlA~G~~~~  175 (382)
                      +++.   +.+..  ++.  .+.++.||+|+|....
T Consensus       164 ~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s~  198 (602)
T 1kf6_A          164 DDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAGR  198 (602)
T ss_dssp             ETTEEEEEEEEETTTTEEEEEECSCEEECCCCCGG
T ss_pred             eCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCcc
Confidence            6654   22322  343  5899999999999653

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.64  E-value=1.4e-07  Score=91.11  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=78.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHH----cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR----AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~----~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      .++|+|||||+.|+++|..|++    .|.+|+++++..                    .........++.+.+.+.+++.
T Consensus       180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~--------------------~~~~~~l~~~~~~~~~~~l~~~  239 (493)
T 1m6i_A          180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEK--------------------GNMGKILPEYLSNWTMEKVRRE  239 (493)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSS--------------------STTTTTSCHHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCc--------------------ccccccCCHHHHHHHHHHHHhc
Confidence            5789999999999999999987    478999998310                    0001122367788888889999


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEE-CCeEEEcCEEEEccCCCCcCC
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFT-DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~-~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      |++++.+ .|..++.+++.+.+.+ ++.++.+|.||+|+|.+|+..
T Consensus       240 GV~v~~~~~V~~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn~~  285 (493)
T 1m6i_A          240 GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPNVE  285 (493)
T ss_dssp             TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCCEEECCT
T ss_pred             CCEEEeCCEEEEEEecCCeEEEEECCCCEEECCEEEECCCCCccHH
Confidence            9999999 6999987666555655 445799999999999998764

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=98.64  E-value=1.9e-07  Score=96.03  Aligned_cols=57  Identities=16%  Similarity=0.112  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcE-EEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPF-KVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~-~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+.+.|++++.+ .|++|..+++.+ .+.++++++.+|.||+|+|.+.
T Consensus       149 ~p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G~i~Ad~VV~AaG~~s  207 (830)
T 1pj5_A          149 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFWG  207 (830)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             cHHHHHHHHHHHHHHcCCEEECCceEEEEEEeCCEEEEEEECCcEEECCEEEECCccch
Confidence            45578888888889999999987 799998877664 5777778999999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=98.63  E-value=1.1e-07  Score=93.91  Aligned_cols=99  Identities=11%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..                    .+ ......++.+.+.+.+++.|++
T Consensus       186 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------------------~~-l~~~~~~~~~~l~~~l~~~GV~  244 (588)
T 3ics_A          186 KPRHATVIGGGFIGVEMVENLRERGIEVTLVEMAN--------------------QV-MPPIDYEMAAYVHEHMKNHDVE  244 (588)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------------------SS-CTTSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhCCCeEEEEecCC--------------------cc-cccCCHHHHHHHHHHHHHcCCE
Confidence            35789999999999999999999999999999310                    00 0113467888888999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .|.+++.+++.+.+ .++.++.+|.||+|+|.+|+..
T Consensus       245 i~~~~~v~~i~~~~~~v~~-~~g~~i~~D~Vi~a~G~~p~~~  285 (588)
T 3ics_A          245 LVFEDGVDALEENGAVVRL-KSGSVIQTDMLILAIGVQPESS  285 (588)
T ss_dssp             EECSCCEEEEEGGGTEEEE-TTSCEEECSEEEECSCEEECCH
T ss_pred             EEECCeEEEEecCCCEEEE-CCCCEEEcCEEEEccCCCCChH
Confidence            9988 69999876554443 2556799999999999988763

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.63  E-value=2.7e-08  Score=87.75  Aligned_cols=41  Identities=29%  Similarity=0.447  Sum_probs=36.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..||+||||||+|+++|+.|+++|++|+|||    +...+||++.
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~E----k~~~~GG~~~   42 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFD----KSRGSGGRMS   42 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEE----CCCCCCCccc
Confidence            4799999999999999999999999999999    4556777654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.62  E-value=1.9e-07  Score=84.67  Aligned_cols=99  Identities=20%  Similarity=0.210  Sum_probs=76.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||+|+.|+++|..|++.|.+|+++++..                    .+   .....+.+.+.+.+++.|++
T Consensus       144 ~~~~v~ViG~G~~g~e~A~~l~~~g~~Vtlv~~~~--------------------~~---~~~~~~~~~l~~~l~~~gv~  200 (320)
T 1trb_A          144 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRD--------------------GF---RAEKILIKRLMDKVENGNII  200 (320)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS--------------------SC---CCCHHHHHHHHHHHHTSSEE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCC--------------------cc---ccCHHHHHHHHHhcccCCeE
Confidence            35789999999999999999999999999999410                    00   11356677777778889999


Q ss_pred             EEEe-eEEEEEecCCc---EEEEE--C-C--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFT--D-S--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~--~-~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++.   +.+..  + +  .++.+|.||+|+|.+|+..-
T Consensus       201 i~~~~~v~~i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~~~~  251 (320)
T 1trb_A          201 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAI  251 (320)
T ss_dssp             EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEESCGG
T ss_pred             EEcCceeEEEEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCChHH
Confidence            9988 79999876644   33432  1 2  46999999999999887643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.61  E-value=1e-07  Score=91.50  Aligned_cols=98  Identities=16%  Similarity=0.147  Sum_probs=73.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|++.|.+|+++++..                    .+......+++.+.+++.++   ++
T Consensus       171 ~~~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~--------------------~~l~~~~d~~~~~~l~~~l~---v~  227 (466)
T 3l8k_A          171 LPQDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLD--------------------RALITLEDQDIVNTLLSILK---LN  227 (466)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS--------------------SSCTTSCCHHHHHHHHHHHC---CC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCC--------------------cCCCCCCCHHHHHHHHhcCE---EE
Confidence            45789999999999999999999999999999310                    00001114566666666554   88


Q ss_pred             EEEe-eEEEEEecC-CcEEEEEC---Ce--EEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKS-RPFKVFTD---SK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~-~~~~v~~~---~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.++ +.+.+..+   +.  ++.+|.||+|+|.+|+..
T Consensus       228 i~~~~~v~~i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~~~  275 (466)
T 3l8k_A          228 IKFNSPVTEVKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPVIP  275 (466)
T ss_dssp             EECSCCEEEEEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEECCC
T ss_pred             EEECCEEEEEEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcccc
Confidence            8888 688998766 66666554   33  699999999999998876

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.59  E-value=3.5e-07  Score=91.44  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=31.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH-----cCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR-----AELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~-----~g~~v~lie~~   90 (382)
                      ..+||+|||||++|+++|..|++     .|++|+|||+.
T Consensus         7 ~~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~   45 (665)
T 1pn0_A            7 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   45 (665)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCC
Confidence            35799999999999999999999     99999999974

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.58  E-value=2.6e-08  Score=92.99  Aligned_cols=106  Identities=22%  Similarity=0.161  Sum_probs=71.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCC--------------C-cc-c-----------
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTS--------------D-VE-N-----------  109 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~--------------~-~~-~-----------  109 (382)
                      +||+|||||++|+++|..|++.  |++|+|+|+..... ..|..+....              . .. .           
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQE-VLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVH   79 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTC-CCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCC-cceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEe
Confidence            4899999999999999999999  99999999743221 1121111000              0 00 0           


Q ss_pred             ----CC---CCC-CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          110 ----FP---GFP-QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       110 ----~~---~~~-~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                          +.   +.+ ..+...++.+.+.+.+.+.|++++.+ +|++++..          .++.+|.||.|+|.++.
T Consensus        80 ~g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~----------~~~~ad~vV~AdG~~S~  144 (381)
T 3c4a_A           80 HNEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGEL----------PLADYDLVVLANGVNHK  144 (381)
T ss_dssp             SSSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGGC----------CGGGCSEEEECCGGGGG
T ss_pred             CCeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchhc----------ccccCCEEEECCCCCch
Confidence                00   000 12456788999999998889999888 57666531          12579999999999775

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=98.57  E-value=1.4e-07  Score=89.97  Aligned_cols=56  Identities=13%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEe---------------cCCc-EEEEECCeEE--EcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDF---------------KSRP-FKVFTDSKSV--LADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~---------------~~~~-~~v~~~~~~~--~~d~lvlA~G~~~  174 (382)
                      ...+...+.+.+.+.|++++.+ +|+++..               +++. +.+.++++++  .+|.||+|+|.+.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g~i~~~Ad~VV~AtG~~s  254 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVGEKLVVAAGVWS  254 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCCEEeecCCEEEECCCcCH
Confidence            4477778888888899999997 7999986               4444 3566766688  9999999999864

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.57  E-value=1.7e-07  Score=92.78  Aligned_cols=99  Identities=15%  Similarity=0.081  Sum_probs=73.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||||+.|+++|..|+++|.+|+++++.         .        -++     ...+++.+.+.+.+++.||+
T Consensus       285 ~~~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~---------~--------~l~-----~~d~~~~~~~~~~l~~~gv~  342 (598)
T 2x8g_A          285 FPGKTLVIGASYVALECAGFLASLGGDVTVMVRS---------I--------LLR-----GFDQQMAEKVGDYMENHGVK  342 (598)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS---------C--------SST-----TSCHHHHHHHHHHHHHTTCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC---------c--------CcC-----cCCHHHHHHHHHHHHhCCCE
Confidence            3468999999999999999999999999999931         0        011     12357778888888899999


Q ss_pred             EEEe-eEEEEEec------C---CcEEEE--E-CCeEE--EcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFK------S---RPFKVF--T-DSKSV--LADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~------~---~~~~v~--~-~~~~~--~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+..+...      +   +.+.+.  . ++.++  .+|.||+|+|.+|+..
T Consensus       343 i~~~~~v~~v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~~~  398 (598)
T 2x8g_A          343 FAKLCVPDEIKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQLS  398 (598)
T ss_dssp             EEETEEEEEEEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEECGG
T ss_pred             EEECCeEEEEEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccccC
Confidence            9988 56666432      1   334333  2 44444  4999999999998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.57  E-value=1e-06  Score=82.06  Aligned_cols=94  Identities=26%  Similarity=0.421  Sum_probs=68.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------------------------------  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------------------------------  242 (382)
                      .|+|||+|+.|+-+|..|++.|.+|+++++++.+..                                            
T Consensus         6 DViIVGaGpaGl~~A~~La~~G~~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (397)
T 3oz2_A            6 DVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRSFIANEVKGARIYGPSEKRPII   85 (397)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTTTEEEEESEEEEECTTCSSCEE
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhhhhhcccceEEEEeCCCceEee
Confidence            599999999999999999999999999998654300                                            


Q ss_pred             -------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          243 -------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       243 -------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                                         ...+ .+...+.|++++.++++..+..+++.  +..+....  .++..++.+|+||-|.|.
T Consensus        86 ~~~~~~~~~~~~~i~R~~~~~~L-~~~a~~~G~~~~~~~~v~~~~~~~~~--~~~v~~~~--~~~~~~~~a~~vIgAdG~  160 (397)
T 3oz2_A           86 LQSEKAGNEVGYVLERDKFDKHL-AALAAKAGADVWVKSPALGVIKENGK--VAGAKIRH--NNEIVDVRAKMVIAADGF  160 (397)
T ss_dssp             EECSSSSCCCEEEECHHHHHHHH-HHHHHHHTCEEESSCCEEEEEEETTE--EEEEEEEE--TTEEEEEEEEEEEECCCT
T ss_pred             ccccccCCceeEEEEHHHHHHHH-HHHHHhcCcEEeeeeeeeeeeeccce--eeeeeecc--cccceEEEEeEEEeCCcc
Confidence                               0111 12234468899999999988877653  33333332  344567899999999997


Q ss_pred             CC
Q 016820          304 EP  305 (382)
Q Consensus       304 ~p  305 (382)
                      ..
T Consensus       161 ~S  162 (397)
T 3oz2_A          161 ES  162 (397)
T ss_dssp             TC
T ss_pred             cc
Confidence            65

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=98.57  E-value=2.5e-07  Score=88.85  Aligned_cols=50  Identities=22%  Similarity=0.230  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHcCcEEEEe-eEEEEEecCCc-EEEEECCeEEEcCEEEEccCC
Q 016820          123 MDRCRNQSLRFGTQIFTE-TVSKVDFKSRP-FKVFTDSKSVLADTVIVATGA  172 (382)
Q Consensus       123 ~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~-~~v~~~~~~~~~d~lvlA~G~  172 (382)
                      .+.+.+.+.+.|++++.+ .|+.|..+++. |.|.++++++.+|+||+|++.
T Consensus       237 ~~~l~~~l~~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~~~~ad~vv~a~p~  288 (477)
T 3nks_A          237 PQALETHLTSRGVSVLRGQPVCGLSLQAEGRWKVSLRDSSLEADHVISAIPA  288 (477)
T ss_dssp             HHHHHHHHHHTTCEEECSCCCCEEEECGGGCEEEECSSCEEEESEEEECSCH
T ss_pred             HHHHHHHHHhcCCEEEeCCEEEEEEEcCCceEEEEECCeEEEcCEEEECCCH
Confidence            344444555668899998 69999887666 888888888999999999986

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=98.56  E-value=1.9e-08  Score=94.02  Aligned_cols=88  Identities=19%  Similarity=0.084  Sum_probs=69.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||+|+.|+++|..|++.|.+|+++|+..                    .+......+++.+.+.+.+++.|+++
T Consensus       146 ~~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~--------------------~~l~~~~~~~~~~~~~~~l~~~gV~~  205 (385)
T 3klj_A          146 KGKAFIIGGGILGIELAQAIIDSGTPASIGIILE--------------------YPLERQLDRDGGLFLKDKLDRLGIKI  205 (385)
T ss_dssp             HSCEEEECCSHHHHHHHHHHHHHTCCEEEECSSS--------------------SSCTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCC--------------------ccchhhcCHHHHHHHHHHHHhCCCEE
Confidence            5789999999999999999999999999999410                    00011234678888888899999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ .+.++            +.++.+|.||+|+|.+|+..
T Consensus       206 ~~~~~v~~i------------g~~~~~D~vv~a~G~~p~~~  234 (385)
T 3klj_A          206 YTNSNFEEM------------GDLIRSSCVITAVGVKPNLD  234 (385)
T ss_dssp             ECSCCGGGC------------HHHHHHSEEEECCCEEECCG
T ss_pred             EeCCEEEEc------------CeEEecCeEEECcCcccChh
Confidence            887 45444            34588999999999998764

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=98.54  E-value=8.5e-07  Score=87.32  Aligned_cols=56  Identities=21%  Similarity=0.277  Sum_probs=41.6

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEec-CCcE---EEEE--CCe--EEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK-SRPF---KVFT--DSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~-~~~~---~v~~--~~~--~~~~d~lvlA~G~~~  174 (382)
                      +..+...+.+.+.+.|++++.+ .|+++..+ ++.+   .+..  ++.  .+.++.||+|||...
T Consensus       142 g~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~  206 (588)
T 2wdq_A          142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAG  206 (588)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCc
Confidence            3577888888888899999998 68888765 4433   3322  232  589999999999964

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=98.53  E-value=2.9e-07  Score=88.17  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             cEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEEccCC
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIVATGA  172 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~  172 (382)
                      .+++.+ .|++|+.+++.+.+.++++ ++.+|+||+|+..
T Consensus       248 ~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~ad~vi~a~p~  287 (470)
T 3i6d_A          248 TKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPH  287 (470)
T ss_dssp             EEEECSCCEEEEEECSSSEEEEESSSCEEEESEEEECSCH
T ss_pred             CEEEeCCceEEEEEcCCeEEEEECCCCEEECCEEEECCCH
Confidence            467777 6999998888888888655 7999999999986

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.52  E-value=3.5e-07  Score=83.55  Aligned_cols=98  Identities=17%  Similarity=0.159  Sum_probs=75.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||+|..|+++|..|++.|.+|+++++..                 .+      ....+..+.+++.+++.|++
T Consensus       151 ~~~~v~viG~G~~g~e~a~~l~~~g~~V~~v~~~~-----------------~~------~~~~~~~~~l~~~l~~~gv~  207 (335)
T 2zbw_A          151 QGKRVLIVGGGDSAVDWALNLLDTARRITLIHRRP-----------------QF------RAHEASVKELMKAHEEGRLE  207 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-----------------SC------CSCHHHHHHHHHHHHTTSSE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhCCEEEEEEcCC-----------------cc------CccHHHHHHHHhccccCCeE
Confidence            35789999999999999999999999999999410                 00      11245667778888888999


Q ss_pred             EEEe-eEEEEEecCC--cEEEEE--CC--eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSR--PFKVFT--DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~~~v~~--~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.+++  .+.+..  ++  .++.+|.||+|+|.+|+..
T Consensus       208 v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (335)
T 2zbw_A          208 VLTPYELRRVEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITKLG  255 (335)
T ss_dssp             EETTEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEECG
T ss_pred             EecCCcceeEccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCCch
Confidence            9998 7889987544  234432  34  4699999999999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=98.51  E-value=7.9e-07  Score=88.47  Aligned_cols=50  Identities=18%  Similarity=0.128  Sum_probs=39.8

Q ss_pred             CCceeeCCCCCcCCCCceEEecccCC-ch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQD-KK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~~-~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      -|.|.+|. ..++..|++||+|+|+. ..       -.+...++..|+.|+.++++++.
T Consensus       372 ~GGi~vd~-~~~v~IpGLYAaGE~a~~g~hGanrlggnsL~~~~vfGr~Ag~~aa~~~~  429 (660)
T 2bs2_A          372 MGGIRTDY-RGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA  429 (660)
T ss_dssp             CCEEECCT-TSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cceEEECC-CCceecCCEEeccccccccccCCCCCchHHHHHHHHHHHHHHHHHHHHhh
Confidence            58999998 67789999999999752 11       22456788899999999998875

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=98.50  E-value=8.1e-07  Score=87.77  Aligned_cols=56  Identities=23%  Similarity=0.357  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCc---EEEEE--CCe--EEEcCEEEEccCCCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRP---FKVFT--DSK--SVLADTVIVATGAVA  174 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~---~~v~~--~~~--~~~~d~lvlA~G~~~  174 (382)
                      +..+...+.+.+.+.|++++.+ .|.++..+++.   +.+..  ++.  .+.++.||+|||...
T Consensus       154 G~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  217 (621)
T 2h88_A          154 GHSLLHTLYGRSLRYDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGYG  217 (621)
T ss_dssp             HHHHHHHHHHHHTTSCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCCG
T ss_pred             HHHHHHHHHHHHHhCCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCccc
Confidence            4578888888888899999998 68888766553   23332  332  589999999999965

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=98.49  E-value=1.2e-06  Score=86.09  Aligned_cols=34  Identities=29%  Similarity=0.281  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|+.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~   64 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAASGIKTGLIEMQ   64 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC
Confidence            4589999999999999999999999999999963

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.49  E-value=8.7e-07  Score=81.97  Aligned_cols=106  Identities=24%  Similarity=0.221  Sum_probs=74.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC-cE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG-TQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-i~  136 (382)
                      .++|+|||+|..|+.+|..|++.|.+|+++++.        ..+...    .+  .+.......+.+.+.+.+++.| ++
T Consensus       166 ~~~vvVvG~G~~g~e~a~~l~~~g~~V~lv~~~--------~~~~~~----~~--d~~~~~~~~~~~~l~~~l~~~g~v~  231 (369)
T 3d1c_A          166 KGQYVVIGGNESGFDAAYQLAKNGSDIALYTST--------TGLNDP----DA--DPSVRLSPYTRQRLGNVIKQGARIE  231 (369)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCEEEEECC------------------------CTTSCCHHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhcCCeEEEEecC--------CCCCCC----CC--CCCccCCHHHHHHHHHHHhhCCcEE
Confidence            358999999999999999999999999999942        011100    00  0011123566677888888886 99


Q ss_pred             EEEe-eEEEEEecCCcEEEEEC-CeEEE-cCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTD-SKSVL-ADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~-~~~~~-~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+..++.+++.+.+... +..+. +|.+|+|+|.+|+..
T Consensus       232 ~~~~~~v~~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~~~  275 (369)
T 3d1c_A          232 MNVHYTVKDIDFNNGQYHISFDSGQSVHTPHEPILATGFDATKN  275 (369)
T ss_dssp             EECSCCEEEEEEETTEEEEEESSSCCEEESSCCEECCCBCGGGS
T ss_pred             EecCcEEEEEEecCCceEEEecCCeEeccCCceEEeeccCCccc
Confidence            9988 68899766665555553 44454 699999999998763

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=98.48  E-value=4.3e-07  Score=88.52  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=38.9

Q ss_pred             CCceeeCCCCCcCCCCceEEecccC-Cc-------hhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          319 DGYIITKPGTTHTSVPGVFAAGDVQ-DK-------KYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       319 ~g~i~vd~~~~~t~~~~vya~GD~~-~~-------~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      .|.+.+|. ..++..|++||+|+|+ +.       .-.....|+..|+.|++++++++.
T Consensus       354 ~GGi~vd~-~~~t~I~GLyAaGE~a~~g~hGanrl~gnsl~~~~vfG~~Ag~~aa~~~~  411 (540)
T 1chu_A          354 CGGVMVDD-HGRTDVEGLYAIGEVSYTGLHGANRMASNSLLECLVYGWSAAEDITRRMP  411 (540)
T ss_dssp             SCEEECCT-TCBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             cCcEEECC-CCCCccCCEEeccccccccccCCCcCcchhHHHHHHHHHHHHHHHHHhcc
Confidence            58899998 5678999999999987 21       122456788889999999988764

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=98.48  E-value=3.4e-07  Score=88.40  Aligned_cols=96  Identities=22%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--------------CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHH
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--------------ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMD  124 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--------------g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~  124 (382)
                      ..++|||||++|+++|.+|+++              ..+|+|+|..                    +.. .....+++.+
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~--------------------~~i-l~~~~~~~~~  276 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEAL--------------------PIV-LNMFEKKLSS  276 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSS--------------------SSS-STTSCHHHHH
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccc--------------------ccc-ccCCCHHHHH
Confidence            4699999999999999998764              3689999931                    000 1123478899


Q ss_pred             HHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-----eEEEcCEEEEccCCCCc
Q 016820          125 RCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-----KSVLADTVIVATGAVAK  175 (382)
Q Consensus       125 ~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-----~~~~~d~lvlA~G~~~~  175 (382)
                      ++++.+++.||+++.+ .|.+++.+...+.....+     .++.+|.||+|+|.+|+
T Consensus       277 ~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~~  333 (502)
T 4g6h_A          277 YAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKAR  333 (502)
T ss_dssp             HHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEECC
T ss_pred             HHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcCC
Confidence            9999999999999998 688887543322232222     35999999999999875

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.46  E-value=2.9e-08  Score=95.90  Aligned_cols=145  Identities=12%  Similarity=0.056  Sum_probs=90.4

Q ss_pred             EcCEEEEccCCCCcCCCCCCCcc---ccCCCcceeeec---------cCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCC
Q 016820          162 LADTVIVATGAVAKKLQFPGSDA---FWNRGISACAVC---------DGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGS  229 (382)
Q Consensus       162 ~~d~lvlA~G~~~~~~~~~g~~~---~~~~~~~~~~~~---------~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~  229 (382)
                      .||.++.++|.+|..+++.+.+.   +...........         ..........+|+|||+|+.|+.+|..|.+.|.
T Consensus        37 ~~~~l~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dVvIVGgG~aGl~aA~~La~~G~  116 (497)
T 2bry_A           37 SFQGLCRALGVESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQACTNTKCLVVGAGPCGLRAAVELALLGA  116 (497)
T ss_dssp             HHHHHHHHHTCCTTCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGGGTTTTTCEEEEECCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccCccccCCCCEEEECccHHHHHHHHHHHHCCC
Confidence            35678999999987665544322   111111111000         000002345789999999999999999999999


Q ss_pred             EEEEEEeCCCCcc----------------------------------h-HH---HHHHhccCCCcEEEcCceeEEEEecC
Q 016820          230 KVYIIHRRDSFRA----------------------------------S-KI---MQNRALTNPKIDVIWNSVVLEAYGEG  271 (382)
Q Consensus       230 ~v~~~~~~~~~~~----------------------------------~-~~---~~~~~l~~~gv~~~~~~~v~~i~~~~  271 (382)
                      +|+++++.+.+..                                  . ..   .+.+.+++.|++++.++.+.++..++
T Consensus       117 ~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~  196 (497)
T 2bry_A          117 RVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQLQLLLLKVALLLGVEIHWGVKFTGLQPPP  196 (497)
T ss_dssp             EEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEECCC
T ss_pred             eEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEec
Confidence            9999998765410                                  0 11   11233445799999999999998752


Q ss_pred             -CceeeeeEEEEeccCCceEEEecCeEEEeeCCCCCh
Q 016820          272 -DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT  307 (382)
Q Consensus       272 -~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~  307 (382)
                       ++. ...+.+....+++...+.+|.||.|+|..+..
T Consensus       197 ~~~~-~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S~~  232 (497)
T 2bry_A          197 RKGS-GWRAQLQPNPPAQLASYEFDVLISAAGGKFVP  232 (497)
T ss_dssp             STTC-CBEEEEESCCCHHHHTCCBSEEEECCCTTCCC
T ss_pred             CCCC-EEEEEEEECCCCCEEEEEcCEEEECCCCCccc
Confidence             111 22344432101222468999999999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.46  E-value=6.5e-07  Score=82.67  Aligned_cols=98  Identities=15%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++..                 .+.      ..+++.+.+.+..++.|++
T Consensus       162 ~~~~vvVvG~G~~g~e~A~~l~~~g~~V~lv~~~~-----------------~~~------~~~~~~~~l~~~~~~~gv~  218 (360)
T 3ab1_A          162 KGKRVVIVGGGDSALDWTVGLIKNAASVTLVHRGH-----------------EFQ------GHGKTAHEVERARANGTID  218 (360)
T ss_dssp             TTCEEEEECSSHHHHHHHHHTTTTSSEEEEECSSS-----------------SCS------SCSHHHHSSHHHHHHTSEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC-----------------CCC------CCHHHHHHHHHHhhcCceE
Confidence            35789999999999999999999999999999410                 000      1124566677777888999


Q ss_pred             EEEe-eEEEEEecCCc---EEEEE-CC--eEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFT-DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~-~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++.   +.+.. ++  ..+.+|.||+|+|..|+..
T Consensus       219 i~~~~~v~~i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~~~  266 (360)
T 3ab1_A          219 VYLETEVASIEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSNLG  266 (360)
T ss_dssp             EESSEEEEEEEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCSCG
T ss_pred             EEcCcCHHHhccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCCHH
Confidence            9998 79999877553   33432 34  4699999999999988754

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.41  E-value=8.5e-07  Score=76.65  Aligned_cols=152  Identities=14%  Similarity=0.188  Sum_probs=102.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-----------------C-------------cchHHHHHHhccCC-
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-----------------F-------------RASKIMQNRALTNP-  254 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-----------------~-------------~~~~~~~~~~l~~~-  254 (382)
                      .+|+|||+|+.|+++|..|.+.|.+|+++++...                 +             .....+ .+.+++. 
T Consensus         4 ~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l-~~~~~~~~   82 (232)
T 2cul_A            4 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARA-KYLLEGLR   82 (232)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHH-HHHHHTCT
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHH-HHHHHcCC
Confidence            4799999999999999999999999999998621                 0             111222 3445565 


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh--------------------hhc---
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK--------------------FVD---  311 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~--------------------~~~---  311 (382)
                      |++++ +.+++++..++++  +..+.+.+   +  ..+.+|.||+|+|..++..                    +..   
T Consensus        83 gv~i~-~~~v~~i~~~~~~--v~~v~~~~---g--~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~~~~l~~~l~  154 (232)
T 2cul_A           83 PLHLF-QATATGLLLEGNR--VVGVRTWE---G--PPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLS  154 (232)
T ss_dssp             TEEEE-ECCEEEEEEETTE--EEEEEETT---S--CCEECSEEEECCTTCSSCEEEETTEEESEEETTEECCSHHHHHHH
T ss_pred             CcEEE-EeEEEEEEEeCCE--EEEEEECC---C--CEEECCEEEECCCCChhhceecCCccCCCCCCcccchhhhCHHHH
Confidence            99998 5799999877642  33344322   3  4799999999999955432                    111   


Q ss_pred             -ccccccCCC--------c-------eeeC-----C-CCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHH
Q 016820          312 -GQLDLHSDG--------Y-------IITK-----P-GTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       312 -~~~~~~~~g--------~-------i~vd-----~-~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                       .++.++...        .       ..+.     . ....|++|+||++|||+ . ......++.||+.+|.+|.+.|
T Consensus       155 ~~g~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~t~~p~iya~G~~a-~-~g~~~~~~~~g~~~a~~i~~~l  231 (232)
T 2cul_A          155 RLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEGLYAVGLCV-R-EGDYARMSEEGKRLAEHLLHEL  231 (232)
T ss_dssp             HTTCCEEEEEEEEC-----CCEEEEEEEECGGGEETTTTEETTSBSEEECGGGT-S-CCCHHHHHHHHHHHHHHHHHHC
T ss_pred             hCCCeEEccccccCcCCCCCCccCchhhcccCCCCCccccccccccceeeeecc-c-CccHHHHHHHHHHHHHHHHhhc
Confidence             112111111        0       0010     0 01236899999999999 4 4577889999999999998876

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.38  E-value=6.2e-07  Score=82.13  Aligned_cols=49  Identities=22%  Similarity=0.269  Sum_probs=39.9

Q ss_pred             CCcC-CCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHHccCccccc
Q 016820          328 TTHT-SVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQEIGSQEDKS  378 (382)
Q Consensus       328 ~~~t-~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~~~  378 (382)
                      ++++ ..+|+|++|...+.  ..-..|..||..|+.|++..+.++++...+.
T Consensus       322 tle~k~~~~Lf~AGqi~G~--~Gy~eAaa~Gl~AG~naa~~~~g~~p~~l~r  371 (443)
T 3g5s_A          322 TLEFREAEGLYAAGVLAGV--EGYLESAATGFLAGLNAARKALGLPPVAPPE  371 (443)
T ss_dssp             TSEETTEEEEEECGGGGTB--CSHHHHHHHHHHHHHHHHHHHTTCCCCCCCT
T ss_pred             hceecCCCCEEECcccccc--HHHHHHHHhHHHHHHHHHHHhcCCCCCCCCh
Confidence            5555 58999999999975  3445999999999999999999988665443

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.35  E-value=9.4e-07  Score=80.31  Aligned_cols=95  Identities=14%  Similarity=0.141  Sum_probs=67.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|..|+++|..|++.|.+|+++++..    .             +   .   ....+.   ++..++.|++
T Consensus       151 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~-------------~---~---~~~~~~---~~l~~~~gv~  204 (325)
T 2q7v_A          151 KGKKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRD----T-------------L---R---ANKVAQ---ARAFANPKMK  204 (325)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSSS----S-------------C---C---SCHHHH---HHHHTCTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCC----c-------------C---C---cchHHH---HHHHhcCCce
Confidence            34789999999999999999999999999999410    0             0   0   012222   2222346999


Q ss_pred             EEEe-eEEEEEecCC--cEEEEE--CCe--EEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSR--PFKVFT--DSK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~~~v~~--~~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ ++.+++.+++  .+.+..  ++.  ++.+|.||+|+|.+|+..
T Consensus       205 i~~~~~v~~i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  252 (325)
T 2q7v_A          205 FIWDTAVEEIQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPNTA  252 (325)
T ss_dssp             EECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred             EecCCceEEEccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCChH
Confidence            9988 6889987543  244442  343  689999999999998764

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.34  E-value=1.3e-06  Score=79.34  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=108.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCCc-----------------------------c-----------h
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSFR-----------------------------A-----------S  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~~-----------------------------~-----------~  243 (382)
                      ..|+|||+|..|+.+|..|.+.  |.+|+++++.+.+.                             +           .
T Consensus        80 ~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~G~~~~~~~~  159 (344)
T 3jsk_A           80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPADVFLDEVGVPYEDEGDYVVVKHA  159 (344)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTTCCBTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccccCCccchhhhcchHHHHHHHHcCCcccccCCeEEEecH
Confidence            4799999999999999999997  99999999875431                             0           0


Q ss_pred             ----HHHHHHhccCCCcEEEcCceeEEEEecCC-----------------ceeeeeEEEEec---cC------CceEEEe
Q 016820          244 ----KIMQNRALTNPKIDVIWNSVVLEAYGEGD-----------------KKVLGGLKVKNL---VT------GQVSDLK  293 (382)
Q Consensus       244 ----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~-----------------g~~~~~v~~~~~---~~------~~~~~~~  293 (382)
                          ..+.+++.+..|++++.++.+.++..+++                 +..+.+|.+...   ..      .+...+.
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~  239 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN  239 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence                12222333336999999999999876552                 235667776532   01      1346799


Q ss_pred             cCeEEEeeCCCCCh-hhhc---cccccc--CCC--ce--------eeCCCCCcCCCCceEEecccCC-----chhhH-HH
Q 016820          294 VSGLFFAIGHEPAT-KFVD---GQLDLH--SDG--YI--------ITKPGTTHTSVPGVFAAGDVQD-----KKYRQ-AV  351 (382)
Q Consensus       294 ~D~vi~~~G~~p~~-~~~~---~~~~~~--~~g--~i--------~vd~~~~~t~~~~vya~GD~~~-----~~~~~-~~  351 (382)
                      +++||.|||..... .++.   ..+.+.  -.|  .+        .|+. +.+ -+|++|++|=.+.     +.... ..
T Consensus       240 Ak~VV~ATG~~s~v~~~~~~~l~~~~~~~~~~g~~~~~~~~~e~~~v~~-t~~-v~~gl~~~gm~~~~~~g~~rmgp~fg  317 (344)
T 3jsk_A          240 APVIISTTGHDGPFGAFSVKRLVSMKQMERLNGMRGLDMQSAEDAIVNN-TRE-IVPGLIVGGMELSEIDGANRMGPTFG  317 (344)
T ss_dssp             CSEEEECCCSSSSSSCHHHHHHHHTTSSSCCCCCEEECHHHHHHHHHHT-CEE-EETTEEECGGGHHHHHTCEECCSCCH
T ss_pred             cCEEEECCCCCchhhHHHHHHHhhcCcccccCCCcccccccchhhhccc-Cce-EcCCEEEechhhHhhcCCCCCCcccc
Confidence            99999999988652 1111   112111  111  11        1221 222 2799999998763     22223 33


Q ss_pred             HHHhhHHHHHHHHHHHHHHccCc
Q 016820          352 TAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       352 ~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      .-..+|+.+|+.|.+.|...+.+
T Consensus       318 ~m~~sg~~~a~~~~~~~~~~~~~  340 (344)
T 3jsk_A          318 AMALSGVKAAHEAIRVFDLRKAQ  340 (344)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeecCHHHHHHHHHHHHhhhhh
Confidence            44589999999999999876644

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.33  E-value=1.7e-06  Score=78.39  Aligned_cols=93  Identities=14%  Similarity=0.148  Sum_probs=68.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||+|+.|+++|..|++.|.+|+++++.    .                .+   .....    +.+.+.+.|+++
T Consensus       155 ~~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~----~----------------~~---~~~~~----l~~~l~~~gv~i  207 (319)
T 3cty_A          155 GKRVVTIGGGNSGAIAAISMSEYVKNVTIIEYM----P----------------KY---MCENA----YVQEIKKRNIPY  207 (319)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTTTBSEEEEECSS----S----------------SC---CSCHH----HHHHHHHTTCCE
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhCCcEEEEEcC----C----------------cc---CCCHH----HHHHHhcCCcEE
Confidence            478999999999999999999999999999941    0                00   01122    334445789999


Q ss_pred             EEe-eEEEEEecCC---cEEEEE--CCe--EEEcCEEEEccCCCCcCC
Q 016820          138 FTE-TVSKVDFKSR---PFKVFT--DSK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       138 ~~~-~v~~i~~~~~---~~~v~~--~~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      +.+ ++.+++.+++   .+.+..  ++.  ++.+|.||+|+|..|+..
T Consensus       208 ~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  255 (319)
T 3cty_A          208 IMNAQVTEIVGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQTS  255 (319)
T ss_dssp             ECSEEEEEEEESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEECCG
T ss_pred             EcCCeEEEEecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccChH
Confidence            988 6889987654   244442  343  589999999999988764

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.32  E-value=1.9e-06  Score=78.47  Aligned_cols=94  Identities=10%  Similarity=0.107  Sum_probs=68.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi  135 (382)
                      ..++++|||+|+.|+.+|..|.+.|.+|+++++..                    .+   ..    ...+.+.+.+ .|+
T Consensus       172 ~~~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~--------------------~~---~~----~~~~~~~l~~~~gv  224 (338)
T 3itj_A          172 RNKPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKD--------------------HL---RA----STIMQKRAEKNEKI  224 (338)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS--------------------SC---CS----CHHHHHHHHHCTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCC--------------------cc---CC----CHHHHHHHHhcCCe
Confidence            35789999999999999999999999999999410                    00   00    1233344444 499


Q ss_pred             EEEEe-eEEEEEecCCc---EEEEE--C--CeEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRP---FKVFT--D--SKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~---~~v~~--~--~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ .+.+++.+++.   +.+..  +  +.++.+|.||+|+|..|+..
T Consensus       225 ~i~~~~~v~~i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  274 (338)
T 3itj_A          225 EILYNTVALEAKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPATK  274 (338)
T ss_dssp             EEECSEEEEEEEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEECCG
T ss_pred             EEeecceeEEEEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCChh
Confidence            99988 68899877653   33332  1  24699999999999988764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.31  E-value=2.8e-06  Score=76.81  Aligned_cols=94  Identities=14%  Similarity=0.085  Sum_probs=67.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+++|||+|+.|+.+|..|.+.|.+|+++++..                 .+.      ..++   .+++..++.|++
T Consensus       153 ~~~~v~vvG~G~~~~e~a~~l~~~g~~v~~~~~~~-----------------~~~------~~~~---~~~~~~~~~gv~  206 (323)
T 3f8d_A          153 KNRVVAVIGGGDSALEGAEILSSYSTKVYLIHRRD-----------------TFK------AQPI---YVETVKKKPNVE  206 (323)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHSSEEEEECSSS-----------------SCC------SCHH---HHHHHHTCTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEeCC-----------------CCC------cCHH---HHHHHHhCCCcE
Confidence            45789999999999999999999999999999410                 000      0122   233334456999


Q ss_pred             EEEe-eEEEEEecCCc--EEEEE--CCe--EEEcCEEEEccCCCCcC
Q 016820          137 IFTE-TVSKVDFKSRP--FKVFT--DSK--SVLADTVIVATGAVAKK  176 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~--~~v~~--~~~--~~~~d~lvlA~G~~~~~  176 (382)
                      ++.+ .+.+++.+++.  +.+..  ++.  ++.+|.||+|+|..|+.
T Consensus       207 ~~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~~  253 (323)
T 3f8d_A          207 FVLNSVVKEIKGDKVVKQVVVENLKTGEIKELNVNGVFIEIGFDPPT  253 (323)
T ss_dssp             EECSEEEEEEEESSSEEEEEEEETTTCCEEEEECSEEEECCCEECCH
T ss_pred             EEeCCEEEEEeccCceeEEEEEECCCCceEEEEcCEEEEEECCCCCh
Confidence            9998 59999877543  33332  133  69999999999998864

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.31  E-value=8.8e-07  Score=79.89  Aligned_cols=96  Identities=18%  Similarity=0.150  Sum_probs=69.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+.+|..|.+.|.+|+++++..                    .+   ....+   .+++..++.|++
T Consensus       146 ~~~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~--------------------~~---~~~~~---~~~~~~~~~gv~  199 (315)
T 3r9u_A          146 KNKEVAVLGGGDTALEEALYLANICSKIYLIHRRD--------------------EF---RAAPS---TVEKVKKNEKIE  199 (315)
T ss_dssp             TTSEEEEECCBHHHHHHHHHHHTTSSEEEEECSSS--------------------SC---BSCHH---HHHHHHHCTTEE
T ss_pred             CcCEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCC--------------------CC---CCCHH---HHHHHHhcCCeE
Confidence            45789999999999999999999999999999410                    00   01122   233444678999


Q ss_pred             EEEe-eEEEEEecCCc---EEEEE-CCe--EEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFT-DSK--SVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~-~~~--~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ .+.+++.+++.   +.+.. ++.  ++.+|.+|+|+|..|+...
T Consensus       200 ~~~~~~v~~i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~~~~  248 (315)
T 3r9u_A          200 LITSASVDEVYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVRNEI  248 (315)
T ss_dssp             EECSCEEEEEEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEECCGG
T ss_pred             EEeCcEEEEEEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCCchh
Confidence            9988 78899877643   33432 332  6899999999999887653

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.30  E-value=4.3e-07  Score=86.92  Aligned_cols=119  Identities=16%  Similarity=0.058  Sum_probs=68.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcc----cCCCCC----------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVE----NFPGFP----------------  114 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~----~~~~~~----------------  114 (382)
                      ..++|+|||+|..|+++|..|++.  +.+|+++++...--......+.......    .+...+                
T Consensus       226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~  305 (463)
T 3s5w_A          226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASALKPADDSPFVNEVFAPKFTDLIYSREHAERERLLREYHNTNY  305 (463)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSCCBCCCCHHHHGGGSHHHHHHHHHSCHHHHHHHHHHTGGGTS
T ss_pred             CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCCcCccCCccchhccChhHHHHHhcCCHHHHHHHHHHhhccCC
Confidence            357999999999999999999999  9999999952110000000000000000    000000                


Q ss_pred             CCCChH---HHHHHH-HHHH-HHcCcEEEEe-eEEEEEecCCcEEEEEC----Ce--EEEcCEEEEccCCCCc
Q 016820          115 QGILGG---DLMDRC-RNQS-LRFGTQIFTE-TVSKVDFKSRPFKVFTD----SK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       115 ~~~~~~---~~~~~~-~~~~-~~~gi~~~~~-~v~~i~~~~~~~~v~~~----~~--~~~~d~lvlA~G~~~~  175 (382)
                      ..+...   ++.+.+ ++.. .+.+++++.+ .|+.+..+++.+.+...    +.  ++.+|.||+|||.+|+
T Consensus       306 ~~~~~~~~~~~~~~l~~~~~~~~~~v~i~~~~~v~~v~~~~~~~~v~~~~~~~g~~~~~~~D~Vv~AtG~~p~  378 (463)
T 3s5w_A          306 SVVDTDLIERIYGVFYRQKVSGIPRHAFRCMTTVERATATAQGIELALRDAGSGELSVETYDAVILATGYERQ  378 (463)
T ss_dssp             SCBCHHHHHHHHHHHHHHHHHCCCCSEEETTEEEEEEEEETTEEEEEEEETTTCCEEEEEESEEEECCCEECC
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCCCCeEEEeCCEEEEEEecCCEEEEEEEEcCCCCeEEEECCEEEEeeCCCCC
Confidence            000111   111111 1111 1258999988 68899887777766542    33  3899999999999987

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.30  E-value=2.3e-06  Score=77.19  Aligned_cols=95  Identities=15%  Similarity=0.175  Sum_probs=67.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|+.|+++|..|++.|.+|+++++.    ..             +   .   ..+++.+.   ..++.||+
T Consensus       142 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~----~~-------------~---~---~~~~~~~~---l~~~~gv~  195 (311)
T 2q0l_A          142 KNKEVAVLGGGDTAVEEAIYLANICKKVYLIHRR----DG-------------F---R---CAPITLEH---AKNNDKIE  195 (311)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHTTSSEEEEECSS----SS-------------C---C---SCHHHHHH---HHTCTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEeeC----Cc-------------c---C---CCHHHHHH---HhhCCCeE
Confidence            3478999999999999999999999999999941    00             0   0   11222222   22346999


Q ss_pred             EEEe-eEEEEEecCCc---EEEEE--CCe--EEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFT--DSK--SVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~--~~~--~~~~d~lvlA~G~~~~~~  177 (382)
                      ++.+ .+.+++.+++.   +.+..  ++.  ++.+|.||+|+|..|+.+
T Consensus       196 v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  244 (311)
T 2q0l_A          196 FLTPYVVEEIKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVNNA  244 (311)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEECCG
T ss_pred             EEeCCEEEEEECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccChh
Confidence            9988 68888876443   34442  343  689999999999998764

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=98.29  E-value=3.1e-06  Score=77.61  Aligned_cols=90  Identities=20%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------------------------chHHHHH
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------------------------ASKIMQN  248 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------------------------~~~~~~~  248 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                     .......
T Consensus         4 ~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~   83 (357)
T 4a9w_A            4 VDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLAYLA   83 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHHHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHHHHH
Confidence            479999999999999999999999999999876421                                     0011123


Q ss_pred             HhccCCCcEEEcCceeEEEEecCCceeeeeEE-EEeccCCceEEEecCeEEEeeCCC
Q 016820          249 RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK-VKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       249 ~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~-~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.+++.|++++.++++.+++.++++     +. +..   .++ .+.+|.+|+|+|..
T Consensus        84 ~~~~~~~~~~~~~~~v~~i~~~~~~-----~~~v~~---~~g-~~~~d~vV~AtG~~  131 (357)
T 4a9w_A           84 QYEQKYALPVLRPIRVQRVSHFGER-----LRVVAR---DGR-QWLARAVISATGTW  131 (357)
T ss_dssp             HHHHHTTCCEECSCCEEEEEEETTE-----EEEEET---TSC-EEEEEEEEECCCSG
T ss_pred             HHHHHcCCEEEcCCEEEEEEECCCc-----EEEEEe---CCC-EEEeCEEEECCCCC
Confidence            4455679999999999999988763     44 443   333 79999999999964

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.29  E-value=3.3e-06  Score=83.96  Aligned_cols=45  Identities=11%  Similarity=0.169  Sum_probs=36.3

Q ss_pred             CCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          328 TTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       328 ~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ..+|+.|+|||+|||++. ....+..+..+|+.++.++++++.+..
T Consensus       447 ~~~t~v~gl~a~Ge~~~~~~hg~~~~sl~~g~~ag~~a~~~~~~~~  492 (662)
T 3gyx_A          447 NRMTTVEGLWTCADGVGASGHKFSSGSHAEGRIVGKQMVRWYLDHK  492 (662)
T ss_dssp             TTBCSSBTEECCSSSBCSCCCCHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCccCCeEeCccccccccCccHhHHHHHHHHHHHHHHHHHhhCC
Confidence            568999999999999852 233366777889999999999998753

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.27  E-value=7.9e-06  Score=81.34  Aligned_cols=35  Identities=37%  Similarity=0.385  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHH---H-cCCCeEEEeccc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAA---R-AELKPILFEGWM   91 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~---~-~g~~v~lie~~~   91 (382)
                      ..+||||||||+||+++|+.|+   + .|.+|+||||..
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~   59 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   59 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcC
Confidence            4689999999999999999999   6 899999999753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.26  E-value=4e-06  Score=75.52  Aligned_cols=94  Identities=15%  Similarity=0.120  Sum_probs=68.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi  135 (382)
                      ..++|+|||+|+.|+++|..|++.|.+|+++++..    .                +.   ..    ..+.+.+.+ .|+
T Consensus       143 ~~~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~----~----------------~~---~~----~~~~~~l~~~~gv  195 (310)
T 1fl2_A          143 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAP----E----------------MK---AD----QVLQDKLRSLKNV  195 (310)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSS----S----------------CC---SC----HHHHHHHHTCTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCc----c----------------cC---cc----HHHHHHHhhCCCe
Confidence            35789999999999999999999999999999410    0                00   11    223344455 699


Q ss_pred             EEEEe-eEEEEEecCCc---EEEEE--CC--eEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRP---FKVFT--DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~---~~v~~--~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ ++.+++.+++.   +.+..  ++  .++.+|.||+|+|..|+..
T Consensus       196 ~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~  245 (310)
T 1fl2_A          196 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLPNTN  245 (310)
T ss_dssp             EEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred             EEecCCceEEEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCccCch
Confidence            99988 78899876543   33432  13  3589999999999988754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=98.26  E-value=2.7e-06  Score=80.00  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=74.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCCCCcc-----------------hHHHHHHhccCCCcEEEcCceeE
Q 016820          206 KPLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRDSFRA-----------------SKIMQNRALTNPKIDVIWNSVVL  265 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~v~  265 (382)
                      ++|+|||+|..|+.+|..|.+   .+.+|+++++.+.+..                 ...+ .+.+++.|++++.+ ++.
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~gv~~~~~-~v~   79 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDL-SEALPEKGIQFQEG-TVE   79 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEH-HHHTGGGTCEEEEC-EEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHH-HHHHhhCCeEEEEe-eEE
Confidence            579999999999999999999   8899999998875411                 1122 35566789999977 899


Q ss_pred             EEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       266 ~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      .++.++..     |.+.+. .+...++.+|.+++|+|.+|+.+.+.
T Consensus        80 ~i~~~~~~-----V~~~~g-~~~~~~~~~d~lViAtG~~~~~~~ip  119 (409)
T 3h8l_A           80 KIDAKSSM-----VYYTKP-DGSMAEEEYDYVIVGIGAHLATELVK  119 (409)
T ss_dssp             EEETTTTE-----EEEECT-TSCEEEEECSEEEECCCCEECGGGSB
T ss_pred             EEeCCCCE-----EEEccC-CcccceeeCCEEEECCCCCcCccCCC
Confidence            99877642     666552 22235689999999999998865443

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.23  E-value=2.8e-06  Score=77.39  Aligned_cols=96  Identities=14%  Similarity=0.104  Sum_probs=69.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ...+|+|||+|..|+.+|..|++.|.+|+++++..    .             +   .   ..+.+.   ++..++.|++
T Consensus       158 ~~~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~----~-------------~---~---~~~~~~---~~~~~~~gv~  211 (333)
T 1vdc_A          158 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD----A-------------F---R---ASKIMQ---QRALSNPKID  211 (333)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSS----S-------------C---C---SCHHHH---HHHHTCTTEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHhcCCeEEEEecCC----c-------------C---C---ccHHHH---HHHHhCCCee
Confidence            35789999999999999999999999999999410    0             0   0   011221   2334567999


Q ss_pred             EEEe-eEEEEEecCC--c---EEEEE--CC--eEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTE-TVSKVDFKSR--P---FKVFT--DS--KSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~---~~v~~--~~--~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+ ++.+++.+++  .   +.+..  ++  .++.+|.||+|+|.+|+..-
T Consensus       212 i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~  263 (333)
T 1vdc_A          212 VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPATKF  263 (333)
T ss_dssp             EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGG
T ss_pred             EecCCceEEEeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccchHH
Confidence            9988 7889987663  2   44443  23  46999999999999987653

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.22  E-value=5.3e-06  Score=74.02  Aligned_cols=94  Identities=15%  Similarity=0.126  Sum_probs=68.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC----------cc---------hHHHHHHhccCC-CcEEEcCceeE
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF----------RA---------SKIMQNRALTNP-KIDVIWNSVVL  265 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~----------~~---------~~~~~~~~l~~~-gv~~~~~~~v~  265 (382)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+..          ..         ...+ .+.+.+. +++++. .++.
T Consensus         3 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~-~~v~   80 (297)
T 3fbs_A            3 FDVIIIGGSYAGLSAALQLGRARKNILLVDAGERRNRFASHSHGFLGQDGKAPGEIIAEA-RRQIERYPTIHWVE-GRVT   80 (297)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECCCCGGGGCSCCCSSTTCTTCCHHHHHHHH-HHHHTTCTTEEEEE-SCEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCcccccchhhcCCcCCCCCCHHHHHHHH-HHHHHhcCCeEEEE-eEEE
Confidence            47999999999999999999999999999964321          10         1222 2334444 788875 4899


Q ss_pred             EEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh
Q 016820          266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       266 ~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                      .++.++++     ..+..   .++..+.+|.+++|+|.+|..+.
T Consensus        81 ~i~~~~~~-----~~v~~---~~g~~~~~d~vviAtG~~~~~~~  116 (297)
T 3fbs_A           81 DAKGSFGE-----FIVEI---DGGRRETAGRLILAMGVTDELPE  116 (297)
T ss_dssp             EEEEETTE-----EEEEE---TTSCEEEEEEEEECCCCEEECCC
T ss_pred             EEEEcCCe-----EEEEE---CCCCEEEcCEEEECCCCCCCCCC
Confidence            99888753     34443   23357999999999999876543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=98.21  E-value=2.8e-06  Score=80.53  Aligned_cols=90  Identities=20%  Similarity=0.223  Sum_probs=67.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcchH---HH-------------HHHhccCCCcEEEcCceeEEE
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRASK---IM-------------QNRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~~~---~~-------------~~~~l~~~gv~~~~~~~v~~i  267 (382)
                      |+|+|||+|..|+.+|..|.+.+  .+||++++.+.+.+..   ..             .++++++.||+++.+ ++++|
T Consensus         3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~-~v~~I   81 (430)
T 3hyw_A            3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINE-KAESI   81 (430)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECS-CEEEE
T ss_pred             CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEe-EEEEE
Confidence            68999999999999999999875  7899999887542110   00             123456679999865 79999


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      +++..     .|.+++     +.++++|.+++|||.++.
T Consensus        82 d~~~~-----~V~~~~-----g~~i~YD~LViAtG~~~~  110 (430)
T 3hyw_A           82 DPDAN-----TVTTQS-----GKKIEYDYLVIATGPKLV  110 (430)
T ss_dssp             ETTTT-----EEEETT-----CCEEECSEEEECCCCEEE
T ss_pred             ECCCC-----EEEECC-----CCEEECCEEEEeCCCCcc
Confidence            98775     144432     357999999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.19  E-value=9e-06  Score=73.76  Aligned_cols=95  Identities=14%  Similarity=0.167  Sum_probs=72.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------chH---HHHHHhccCCCcEEEcC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------ASK---IMQNRALTNPKIDVIWN  261 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------~~~---~~~~~~l~~~gv~~~~~  261 (382)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+.                     ...   ....+.+++.+++++.+
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTICLE   87 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcEEcc
Confidence            579999999999999999999999999999976432                     011   11234566779999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC---CCChh
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH---EPATK  308 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~---~p~~~  308 (382)
                      +.+.+++..+++.    +.+..   .++. +.+|.+++|+|.   .|...
T Consensus        88 ~~v~~i~~~~~~~----~~v~~---~~g~-~~~d~vVlAtG~~~~~p~~~  129 (332)
T 3lzw_A           88 QAVESVEKQADGV----FKLVT---NEET-HYSKTVIITAGNGAFKPRKL  129 (332)
T ss_dssp             CCEEEEEECTTSC----EEEEE---SSEE-EEEEEEEECCTTSCCEECCC
T ss_pred             CEEEEEEECCCCc----EEEEE---CCCE-EEeCEEEECCCCCcCCCCCC
Confidence            9999999877532    44443   2333 999999999999   66544

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.18  E-value=3.4e-06  Score=77.02  Aligned_cols=97  Identities=18%  Similarity=0.176  Sum_probs=69.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|..|+++|..|++.|.+|+++++..    .    +         .      ..+.+.   .+..++.||+
T Consensus       154 ~~~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~----~----~---------~------~~~~~~---~~~~~~~gV~  207 (335)
T 2a87_A          154 RDQDIAVIGGGDSAMEEATFLTRFARSVTLVHRRD----E----F---------R------ASKIML---DRARNNDKIR  207 (335)
T ss_dssp             TTCEEEEECSSHHHHHHHHHHTTTCSEEEEECSSS----S----C---------S------SCTTHH---HHHHHCTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCC----c----C---------C------ccHHHH---HHHhccCCcE
Confidence            35789999999999999999999999999999410    0    0         0      001111   1333567999


Q ss_pred             EEEe-eEEEEEecCCc--EEEEE--CC--eEEEcCEEEEccCCCCcCCCC
Q 016820          137 IFTE-TVSKVDFKSRP--FKVFT--DS--KSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~--~~v~~--~~--~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ++.+ ++.+++.+++.  +.+..  ++  .++.+|.||+|+|.+|+..-+
T Consensus       208 v~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~~~~~  257 (335)
T 2a87_A          208 FLTNHTVVAVDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPRSGLV  257 (335)
T ss_dssp             EECSEEEEEEECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEECCTTT
T ss_pred             EEeCceeEEEecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccChhHh
Confidence            9988 68889876532  44442  23  469999999999999876543

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=98.18  E-value=1.9e-06  Score=79.67  Aligned_cols=78  Identities=18%  Similarity=0.146  Sum_probs=52.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC-CCCCcceecCCCccc------CCCCCC--CC-ChHHHHHHH
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND-IAPGGQLTTTSDVEN------FPGFPQ--GI-LGGDLMDRC  126 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~-~~~gg~~~~~~~~~~------~~~~~~--~~-~~~~~~~~~  126 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|    +. ..+||++........      ..++..  +. .......++
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE----~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~~~  118 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILE----ANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHPLT  118 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEEC----SCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCHHH
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEe----ccccccCCceeeecccccccccccCCCcEEecCceeecchHHHH
Confidence            45799999999999999999999999999999    55 678887654321100      011100  00 012234567


Q ss_pred             HHHHHHcCcEEE
Q 016820          127 RNQSLRFGTQIF  138 (382)
Q Consensus       127 ~~~~~~~gi~~~  138 (382)
                      .++++++|+...
T Consensus       119 ~~~~~~lGl~~~  130 (376)
T 2e1m_A          119 LALIDKLGLKRR  130 (376)
T ss_dssp             HHHHHHTTCCEE
T ss_pred             HHHHHHcCCCcc
Confidence            777888887653

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=98.18  E-value=1e-06  Score=85.11  Aligned_cols=51  Identities=16%  Similarity=0.225  Sum_probs=37.1

Q ss_pred             HHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEE-CCeEEEcCEEEEccCCCC
Q 016820          124 DRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFT-DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       124 ~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~-~~~~~~~d~lvlA~G~~~  174 (382)
                      +.+.+.+++.|.+++++ .|++|..+++.++ |.+ +++++.+|.||.+++...
T Consensus       225 ~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~~~~  278 (501)
T 4dgk_A          225 QGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNADVVH  278 (501)
T ss_dssp             HHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC---
T ss_pred             HHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCCHHH
Confidence            33445566778999999 6999998888765 555 456799999999887643

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.17  E-value=2.2e-06  Score=86.15  Aligned_cols=98  Identities=13%  Similarity=0.059  Sum_probs=71.6

Q ss_pred             cccEEEEC--CcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           58 KTKVCIIG--SGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        58 ~~~vvIIG--aG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .++|+|||  +|..|+++|..|++.|.+|+++++.    .....                ..........+.+.+++.|+
T Consensus       523 g~~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~----~~l~~----------------~~~~~~~~~~l~~~l~~~GV  582 (690)
T 3k30_A          523 GKKVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPG----AQVSS----------------WTNNTFEVNRIQRRLIENGV  582 (690)
T ss_dssp             SSEEEEEECSCSSHHHHHHHHHHHTTCEEEEEESS----SSTTG----------------GGGGGTCHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCccHHHHHHHHHhCCCeeEEEecc----ccccc----------------ccccchhHHHHHHHHHHCCC
Confidence            45799999  9999999999999999999999931    01000                01112335566777788999


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE----CCeEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT----DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~----~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ +|++++.++  ..+..    ++.++.+|.||+|+|.+|+..
T Consensus       583 ~i~~~~~V~~i~~~~--~~v~~~~~~~~~~i~aD~VV~A~G~~p~~~  627 (690)
T 3k30_A          583 ARVTDHAVVAVGAGG--VTVRDTYASIERELECDAVVMVTARLPREE  627 (690)
T ss_dssp             EEEESEEEEEEETTE--EEEEETTTCCEEEEECSEEEEESCEEECCH
T ss_pred             EEEcCcEEEEEECCe--EEEEEccCCeEEEEECCEEEECCCCCCChH
Confidence            99999 688887543  34432    234699999999999988653

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.16  E-value=6.1e-06  Score=74.42  Aligned_cols=162  Identities=15%  Similarity=0.186  Sum_probs=103.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCCc----------------------------------------c--
Q 016820          207 PLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSFR----------------------------------------A--  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~~----------------------------------------~--  242 (382)
                      +|+|||+|+.|+.+|..|.+.  |.+|+++++.+...                                        .  
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~~~g~~~~~~~~~~~~~~~L~~~Gv~~~~~g~~~~~~~~~  146 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQELEIPYEDEGDYVVVKHAA  146 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCGGGCCCEEEETTTHHHHHHTTCCCEECSSEEEESCHH
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccccccccCcccchhhhhhHHHHHHHhhCcccccCCCeEEEcchH
Confidence            799999999999999999998  99999999865431                                        0  


Q ss_pred             --hHHHHHHhccCCCcEEEcCceeEEEEecC--C-c-eeeeeEEEEec---------cCCceEEEec-------------
Q 016820          243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEG--D-K-KVLGGLKVKNL---------VTGQVSDLKV-------------  294 (382)
Q Consensus       243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~--~-g-~~~~~v~~~~~---------~~~~~~~~~~-------------  294 (382)
                        ...+.+++.+..|++++.++.+.++..++  + | ..+.++.+...         ...++..+.+             
T Consensus       147 ~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~  226 (326)
T 2gjc_A          147 LFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQ  226 (326)
T ss_dssp             HHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSST
T ss_pred             HHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccc
Confidence              01122233344699999999999998764  2 2 14777776531         0113467899             


Q ss_pred             --CeEEEeeCCCCChh-hhcccc-cccCCC--------------ceeeCCCCCc-CCCCceEEecccCC-----chhhH-
Q 016820          295 --SGLFFAIGHEPATK-FVDGQL-DLHSDG--------------YIITKPGTTH-TSVPGVFAAGDVQD-----KKYRQ-  349 (382)
Q Consensus       295 --D~vi~~~G~~p~~~-~~~~~~-~~~~~g--------------~i~vd~~~~~-t~~~~vya~GD~~~-----~~~~~-  349 (382)
                        |.||.|||...... ++...+ .++..+              -..|+. +.. +-+|++|++|-...     +.... 
T Consensus       227 ~~~~VV~ATG~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~e~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~r~g~~  305 (326)
T 2gjc_A          227 KHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIH-SGAYAGVDNMYFAGMEVAELDGLNRMGPT  305 (326)
T ss_dssp             TCCEEEECCCCC--CCSHHHHHHHHHHSSCCCCCCCCBCHHHHHHHHHHH-CEECTTSTTEEECTHHHHHHHTCCBCCSC
T ss_pred             cCCEEEECcCCCchHHHHHHhhccccccccccCceeccccccchhheeec-CCCccccCCEEECChHHHHhcCCCCCChh
Confidence              99999999885432 222111 111111              011222 223 26899999999762     12222 


Q ss_pred             HHHHHhhHHHHHHHHHHHHH
Q 016820          350 AVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       350 ~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ...-.-+|+.+|+.|.+.|.
T Consensus       306 fg~m~~sg~~~a~~~~~~~~  325 (326)
T 2gjc_A          306 FGAMALSGVHAAEQILKHFA  325 (326)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHHHHHHHHHHhh
Confidence            33455889999999998875

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.16  E-value=3.6e-06  Score=84.38  Aligned_cols=119  Identities=19%  Similarity=0.275  Sum_probs=69.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec-c---cCCCC---CCCcc------ee-cCCC---cccCCCCCCCCCh
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG-W---MANDI---APGGQ------LT-TTSD---VENFPGFPQGILG  119 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~-~---~~~~~---~~gg~------~~-~~~~---~~~~~~~~~~~~~  119 (382)
                      ..++|+|||||+.|+++|..|++.|.+|+++-. +   .....   ..+..      .. ....   ....+........
T Consensus       493 ~~~~VvVIGgG~~g~E~A~~l~~~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l~~~l~  572 (671)
T 1ps9_A          493 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLG  572 (671)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTTTSC
T ss_pred             CCCeEEEECCChhHHHHHHHHHhcCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhhccccc
Confidence            357899999999999999999999987764200 0   00000   00000      00 0000   0000000000112


Q ss_pred             HHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC--eEEEcCEEEEccCCCCcCC
Q 016820          120 GDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       120 ~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      ......+++.+++.||+++.+ ++..++.  +.+.+..++  .++.+|.||+|+|.+|+..
T Consensus       573 ~~~~~~~~~~l~~~GV~v~~~~~v~~i~~--~~v~~~~~G~~~~i~~D~Vi~a~G~~p~~~  631 (671)
T 1ps9_A          573 KTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLHVVINGETQVLAVDNVVICAGQEPNRA  631 (671)
T ss_dssp             TTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEEEEETTEEEEECCSEEEECCCEEECCT
T ss_pred             cccHHHHHHHHHhcCCEEEeCcEEEEEeC--CeEEEecCCeEEEEeCCEEEECCCccccHH
Confidence            234455667778889999998 6888874  345553455  4699999999999998653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.14  E-value=5.5e-06  Score=74.73  Aligned_cols=95  Identities=12%  Similarity=0.077  Sum_probs=59.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||+.|+++|..|++.|.+|+|+|+.                    +.+   .....   .......+.++.
T Consensus       144 ~~k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~--------------------~~~---~~~~~---~~~~~~~~~~~~  197 (312)
T 4gcm_A          144 KNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRR--------------------DEL---RAQRI---LQDRAFKNDKID  197 (312)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHTTTCSEEEEECSS--------------------SSC---CSCHH---HHHHHHHCTTEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCEEEEEecc--------------------ccc---Ccchh---HHHHHHHhcCcc
Confidence            3578999999999999999999999999999941                    000   00111   112333445666


Q ss_pred             EEEe-eEEEEEecCCcE---EEEE----CCeEEEcCEEEEccCCCCcCC
Q 016820          137 IFTE-TVSKVDFKSRPF---KVFT----DSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~---~v~~----~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      .... .+..+...+...   ....    +...+.+|.+++++|..|+..
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~~~g~~~~~~  246 (312)
T 4gcm_A          198 FIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTA  246 (312)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEESCG
T ss_pred             eeeecceeeeeccccccccceeeeecCCceeEEeeeeEEeecCCCcCch
Confidence            5544 233333222211   1111    224589999999999988765

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.13  E-value=5.6e-06  Score=74.62  Aligned_cols=97  Identities=12%  Similarity=0.062  Sum_probs=63.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||+|+.|+++|..|+++|.+|+++++..                       ......+   ...+.....++.
T Consensus       151 ~~~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~-----------------------~~~~~~~---~~~~~~~~~~~~  204 (314)
T 4a5l_A          151 RNKVLMVVGGGDAAMEEALHLTKYGSKVIILHRRD-----------------------AFRASKT---MQERVLNHPKIE  204 (314)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSS-----------------------SCCSCHH---HHHHHHTCTTEE
T ss_pred             CCCeEEEECCChHHHHHHHHHHHhCCeeeeecccc-----------------------cccccch---hhhhhhccccee
Confidence            34789999999999999999999999999999310                       0011111   122333444666


Q ss_pred             EEEe-eEEEEEecCCc---EEEEE----CCeEEEcCEEEEccCCCCcCCCC
Q 016820          137 IFTE-TVSKVDFKSRP---FKVFT----DSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~---~~v~~----~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      .+.. .+..+....+.   +.+..    ++..+.+|.|++|+|..|+...+
T Consensus       205 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~d~vi~a~G~~pn~~~l  255 (314)
T 4a5l_A          205 VIWNSELVELEGDGDLLNGAKIHNLVSGEYKVVPVAGLFYAIGHSPNSKFL  255 (314)
T ss_dssp             EECSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEESCGGG
T ss_pred             eEeeeeeEEEEeeeeccceeEEeecccccceeeccccceEecccccChhHh
Confidence            5555 45555544332   23332    23469999999999999987644

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.11  E-value=8.3e-06  Score=77.40  Aligned_cols=95  Identities=19%  Similarity=0.260  Sum_probs=72.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCCCCcchH-------------HH---HHHhccCCCcEEEcCceeEE
Q 016820          206 KPLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRDSFRASK-------------IM---QNRALTNPKIDVIWNSVVLE  266 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~~~~~~~-------------~~---~~~~l~~~gv~~~~~~~v~~  266 (382)
                      ++|+|||+|..|+.+|..|.+   .+.+|+++++.+.+....             .+   ..+.+++.||+++. .++..
T Consensus         5 ~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~-~~v~~   83 (437)
T 3sx6_A            5 AHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIA-QSAEQ   83 (437)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEEC-SCEEE
T ss_pred             CcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEE-eEEEE
Confidence            689999999999999999998   789999999888652110             00   12456678999984 68999


Q ss_pred             EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      ++.++.     .|.+.+   +  .++.+|.+++|+|.+|+...+.
T Consensus        84 id~~~~-----~V~~~~---g--~~i~~d~lviAtG~~~~~~~ip  118 (437)
T 3sx6_A           84 IDAEAQ-----NITLAD---G--NTVHYDYLMIATGPKLAFENVP  118 (437)
T ss_dssp             EETTTT-----EEEETT---S--CEEECSEEEECCCCEECGGGST
T ss_pred             EEcCCC-----EEEECC---C--CEEECCEEEECCCCCcCcccCC
Confidence            988764     144432   3  5699999999999998866544

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.10  E-value=1.5e-05  Score=77.30  Aligned_cols=94  Identities=17%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gi  135 (382)
                      ..++|+|||+|..|+++|..|++.|.+|+++++.    ..                +.   ..    ..+.+.+.+ .||
T Consensus       354 ~~k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~----~~----------------l~---~~----~~l~~~l~~~~gV  406 (521)
T 1hyu_A          354 KGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA----PE----------------MK---AD----QVLQDKVRSLKNV  406 (521)
T ss_dssp             BTSEEEEECCSHHHHHHHHHHHHHBSEEEEECSS----SS----------------CC---SC----HHHHHHHTTCTTE
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhCCEEEEEEeC----cc----------------cC---cC----HHHHHHHhcCCCc
Confidence            3578999999999999999999999999999931    00                00   01    234445555 599


Q ss_pred             EEEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ .++++..+++.+   .+..  ++  .++.+|.||+|+|..|+..
T Consensus       407 ~v~~~~~v~~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~pn~~  456 (521)
T 1hyu_A          407 DIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLPNTH  456 (521)
T ss_dssp             EEECSEEEEEEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEESCG
T ss_pred             EEEeCCEEEEEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCCCch
Confidence            99988 688888765443   3332  13  2589999999999988764

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=98.07  E-value=2e-05  Score=79.84  Aligned_cols=33  Identities=33%  Similarity=0.408  Sum_probs=31.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|+
T Consensus       335 ~~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~  367 (776)
T 4gut_A          335 HNKSVIIIGAGPAGLAAARQLHNFGIKVTVLEA  367 (776)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence            458999999999999999999999999999995

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=98.06  E-value=4.5e-06  Score=81.06  Aligned_cols=42  Identities=26%  Similarity=0.367  Sum_probs=37.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|    +...+||.+..
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE----~~~~~GGr~~t   45 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLE----ARDRVGGRTYT   45 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEEC----SSSSSBTTCCE
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEe----CCCCCCCceee
Confidence            4799999999999999999999999999999    55677887643

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=98.06  E-value=3.6e-06  Score=79.44  Aligned_cols=43  Identities=28%  Similarity=0.500  Sum_probs=37.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .++||+|||||++|+++|+.|++.| ++|+|+|    +...+||.+..
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E----~~~~~GG~~~t   48 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILE----RTDHVGGKCHS   48 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEEC----SSSCSSTTCCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEE----CCCCCCCcccc
Confidence            4579999999999999999999999 9999999    55677877654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=98.06  E-value=2.8e-06  Score=82.45  Aligned_cols=40  Identities=33%  Similarity=0.356  Sum_probs=34.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQ  100 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~  100 (382)
                      ..+||+|||||++||+||+.|++.| ++|+|+|+    ...+||+
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa----~~riGGr   47 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEA----RDRVGGR   47 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHHTTCCSEEEECS----SSSSBTT
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeC----CCCCCCc
Confidence            4579999999999999999999999 99999994    4445554

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=98.05  E-value=1.8e-05  Score=74.52  Aligned_cols=93  Identities=16%  Similarity=0.217  Sum_probs=70.6

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      ..+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                          
T Consensus        27 ~~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  106 (417)
T 3v76_A           27 KQDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYRPQDF  106 (417)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSCHHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcCHHHH
Confidence            45899999999999999999999999999998764300                                          


Q ss_pred             ------------------------hHHH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          243 ------------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       243 ------------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                                              ...+   +.+.+++.|++++.++++.++..++++     +.+..   .++ .+.+|
T Consensus       107 ~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~-----~~V~~---~~g-~i~ad  177 (417)
T 3v76_A          107 VALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASG-----FRVTT---SAG-TVDAA  177 (417)
T ss_dssp             HHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTE-----EEEEE---TTE-EEEES
T ss_pred             HHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCE-----EEEEE---CCc-EEEee
Confidence                                    0011   122344569999999999999887764     55554   333 79999


Q ss_pred             eEEEeeCCCCC
Q 016820          296 GLFFAIGHEPA  306 (382)
Q Consensus       296 ~vi~~~G~~p~  306 (382)
                      .||+|+|..+.
T Consensus       178 ~VIlAtG~~S~  188 (417)
T 3v76_A          178 SLVVASGGKSI  188 (417)
T ss_dssp             EEEECCCCSSC
T ss_pred             EEEECCCCccC
Confidence            99999999863

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.05  E-value=7.1e-06  Score=76.88  Aligned_cols=96  Identities=16%  Similarity=0.242  Sum_probs=69.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCc---chHHHH------------HHhccCCCcEEEcCceeEEE
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFR---ASKIMQ------------NRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~---~~~~~~------------~~~l~~~gv~~~~~~~v~~i  267 (382)
                      +|+|+|||+|+.|+.+|..|.+.+  .+|+++++++.+.   ......            .+.+.+.||+++.+ ++..|
T Consensus         2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~~~~~gv~~i~~-~v~~i   80 (401)
T 3vrd_B            2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDGLRAHGIQVVHD-SALGI   80 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHHHHHTTCEEECS-CEEEE
T ss_pred             cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHHHHHCCCEEEEe-EEEEE
Confidence            689999999999999999998876  5899999877531   111000            01233468998854 78899


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                      +++..-     +.+.     ++.++.+|.+++|+|.+++.....
T Consensus        81 d~~~~~-----v~~~-----~g~~i~yd~LviAtG~~~~~~~i~  114 (401)
T 3vrd_B           81 DPDKKL-----VKTA-----GGAEFAYDRCVVAPGIDLLYDKIE  114 (401)
T ss_dssp             ETTTTE-----EEET-----TSCEEECSEEEECCCEEECGGGSB
T ss_pred             EccCcE-----EEec-----ccceeecceeeeccCCccccCCcc
Confidence            887751     3332     336799999999999998776544

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.01  E-value=3.6e-05  Score=73.59  Aligned_cols=135  Identities=13%  Similarity=0.207  Sum_probs=83.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhh---cCCE---EEEEEeCCCCc--------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTK---YGSK---VYIIHRRDSFR--------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~---~g~~---v~~~~~~~~~~--------------------------------------  241 (382)
                      ++|+|||+|+.|+.+|..|.+   .|.+   |+++++.+.+.                                      
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~   82 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA   82 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence            589999999999999999999   8998   99999875320                                      


Q ss_pred             ----------------chHHH---HHHhccCCCcE--EEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEe
Q 016820          242 ----------------ASKIM---QNRALTNPKID--VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFA  300 (382)
Q Consensus       242 ----------------~~~~~---~~~~l~~~gv~--~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~  300 (382)
                                      ....+   +++.+++.|++  ++.++.|..++..+++. ...|.+.+..++....+.+|.||+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~-~~~V~~~~~~~g~~~~~~~d~VVvA  161 (464)
T 2xve_A           83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQ-TFTVTVQDHTTDTIYSEEFDYVVCC  161 (464)
T ss_dssp             TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTT-EEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCC-cEEEEEEEcCCCceEEEEcCEEEEC
Confidence                            00111   12233445777  88899999998866421 1235555422233367899999999


Q ss_pred             eC--CCCChhhhcccccccCCCceeeCCCCCc---CCCCceEEecccC
Q 016820          301 IG--HEPATKFVDGQLDLHSDGYIITKPGTTH---TSVPGVFAAGDVQ  343 (382)
Q Consensus       301 ~G--~~p~~~~~~~~~~~~~~g~i~vd~~~~~---t~~~~vya~GD~~  343 (382)
                      +|  .+|..+.+. ++.. -.|.+........   ...++|-++|-..
T Consensus       162 tG~~s~p~~p~ip-G~~~-~~g~~~hs~~~~~~~~~~~k~VvVVG~G~  207 (464)
T 2xve_A          162 TGHFSTPYVPEFE-GFEK-FGGRILHAHDFRDALEFKDKTVLLVGSSY  207 (464)
T ss_dssp             CCSSSSBCCCCCB-TTTT-CCSEEEEGGGCCCGGGGTTSEEEEECCST
T ss_pred             CCCCCCCccCCCC-Cccc-CCceEEehhhhCCHhHcCCCEEEEEcCCC
Confidence            99  677655333 3221 0222221111111   1346788888654

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=98.00  E-value=5.7e-06  Score=78.92  Aligned_cols=43  Identities=14%  Similarity=0.178  Sum_probs=38.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|    +...+||.+..
T Consensus        10 ~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE----~~~~~GG~~~t   52 (453)
T 2bcg_G           10 TDYDVIVLGTGITECILSGLLSVDGKKVLHID----KQDHYGGEAAS   52 (453)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGCE
T ss_pred             ccCCEEEECcCHHHHHHHHHHHHCCCeEEEEe----CCCCCCccccc
Confidence            35899999999999999999999999999999    66788887654

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.99  E-value=4.8e-06  Score=79.30  Aligned_cols=42  Identities=31%  Similarity=0.434  Sum_probs=36.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..+||+|||||++|+++|..|++.|++|+|+|    +...+||.+.
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E----~~~~~GG~~~   45 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRKAGLSVAVIE----ARDRVGGRTW   45 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCTTCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEE----CCCCCCCcee
Confidence            45799999999999999999999999999999    4556677653

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.97  E-value=1.6e-05  Score=77.23  Aligned_cols=95  Identities=20%  Similarity=0.305  Sum_probs=71.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------------------------------c-
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------------------------------A-  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------------------~-  242 (382)
                      ..+|+|||+|+.|+.+|..|++.|.+|+++++.+.+.                                         . 
T Consensus       107 ~~DVVIVGgGpaGL~aA~~La~~G~kV~VlEr~~~~~~R~~~~~g~w~~~~~~~~~~i~~g~gGag~~sdgkl~~~i~~~  186 (549)
T 3nlc_A          107 TERPIVIGFGPCGLFAGLVLAQMGFNPIIVERGKEVRERTKDTFGFWRKRTLNPESNVQFGEGGAGTFSDGKLYSQVKDP  186 (549)
T ss_dssp             CCCCEEECCSHHHHHHHHHHHHTTCCCEEECSSCCHHHHHHHHHHHHHHCCCCTTSSSSSSTTGGGTTSCCCCCCCSCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEEccCcccccccchhcccccccccccccceeccCCcccccCCceEEEeccc
Confidence            4789999999999999999999999999999874320                                         0 


Q ss_pred             --------------------------------hHHH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCC
Q 016820          243 --------------------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTG  287 (382)
Q Consensus       243 --------------------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~  287 (382)
                                                      ...+   +.+.+++.|++++.+++++++..++++  +..|.+.+   +
T Consensus       187 ~~~~~~v~~~~~~~G~~~~i~~~~~p~~G~~~~~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~--v~gV~l~~---G  261 (549)
T 3nlc_A          187 NFYGRKVITEFVEAGAPEEILYVSKPHIGTFKLVTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQ--ITGVTLSN---G  261 (549)
T ss_dssp             TCHHHHHHHHHHHTTCCGGGGTBSSCCCCHHHHHHHHHHHHHHHHHTTCEEESSCCEEEEEESSSB--EEEEEETT---S
T ss_pred             cccHHHHHHHHHHcCCCceEeeccccccccchHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCE--EEEEEECC---C
Confidence                                            0011   123345579999999999999887653  33444432   3


Q ss_pred             ceEEEecCeEEEeeCCCCC
Q 016820          288 QVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       288 ~~~~~~~D~vi~~~G~~p~  306 (382)
                        ..+.+|.||+|+|..+.
T Consensus       262 --~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          262 --EEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             --CEEECSCEEECCCTTCH
T ss_pred             --CEEECCEEEECCCCChh
Confidence              57999999999999985

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.96  E-value=6.6e-06  Score=77.11  Aligned_cols=42  Identities=21%  Similarity=0.286  Sum_probs=37.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc-CCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .+||+|||||++|+++|+.|++. |++|+|+|    +...+||.+..
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E----~~~~~GG~~~~   49 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE----RRPHIGGNAYS   49 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEEC----SSSSSSGGGCE
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEe----CCCCCCCeeee
Confidence            58999999999999999999999 99999999    56678887654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.96  E-value=5.5e-06  Score=79.48  Aligned_cols=46  Identities=20%  Similarity=0.269  Sum_probs=35.2

Q ss_pred             ccccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           53 EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        53 ~~~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      |+....+||+|||||++|+++|+.|++.|++|+|+|    +...+||.+.
T Consensus        11 ~~~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E----~~~~~GGr~~   56 (478)
T 2ivd_A           11 MPRTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLE----SSARLGGAVG   56 (478)
T ss_dssp             ------CCEEEECCBHHHHHHHHHHHTTTCCEEEEC----SSSSSBTTCC
T ss_pred             CCCCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEE----cCCCCCceee
Confidence            344456899999999999999999999999999999    4556666543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=97.93  E-value=2.1e-05  Score=81.87  Aligned_cols=88  Identities=15%  Similarity=0.105  Sum_probs=66.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF  138 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  138 (382)
                      ++|+|||+|+.|+++|..|++.|.+|+|+|+..                    .    +.. .     .+.+++.||+++
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~--------------------~----~~~-~-----~~~l~~~GV~v~  334 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARS--------------------S----ISA-A-----AAQAVADGVQVI  334 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCS--------------------S----CCH-H-----HHHHHHTTCCEE
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCC--------------------c----cch-h-----HHHHHhCCeEEE
Confidence            689999999999999999999999999999310                    0    011 1     345678899999


Q ss_pred             Ee-eEEEEEec--CC--cEEEEE------CC--eEEEcCEEEEccCCCCcC
Q 016820          139 TE-TVSKVDFK--SR--PFKVFT------DS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       139 ~~-~v~~i~~~--~~--~~~v~~------~~--~~~~~d~lvlA~G~~~~~  176 (382)
                      .+ .+.++..+  ++  .+.+..      ++  .++.+|.||+|+|.+|+.
T Consensus       335 ~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P~~  385 (965)
T 2gag_A          335 SGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNPVV  385 (965)
T ss_dssp             ETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEECC
T ss_pred             eCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCcCh
Confidence            99 68889873  32  344443      12  469999999999998865

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.93  E-value=4.6e-05  Score=68.41  Aligned_cols=97  Identities=13%  Similarity=0.226  Sum_probs=64.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC----------Cc-----c----hHHHHHHhccCCCcEEEcCceeEE
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS----------FR-----A----SKIMQNRALTNPKIDVIWNSVVLE  266 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~----------~~-----~----~~~~~~~~l~~~gv~~~~~~~v~~  266 (382)
                      -.|+|||+|+.|+..|..+.+.|.+|+++++...          +.     .    .....++..+..++.++ ...+..
T Consensus         7 yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~   85 (304)
T 4fk1_A            7 IDCAVIGAGPAGLNASLVLGRARKQIALFDNNTNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYY-EKTVVM   85 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEE-ECCEEE
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEE-eeEEEE
Confidence            3699999999999999999999999999987532          10     0    11122233333455555 445556


Q ss_pred             EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh
Q 016820          267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV  310 (382)
Q Consensus       267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~  310 (382)
                      +...+.+.    .++..   .++.++.+|.+|+|||.+|..+.+
T Consensus        86 ~~~~~~~~----~~v~~---~~g~~~~a~~liiATGs~p~~p~i  122 (304)
T 4fk1_A           86 ITKQSTGL----FEIVT---KDHTKYLAERVLLATGMQEEFPSI  122 (304)
T ss_dssp             EEECTTSC----EEEEE---TTCCEEEEEEEEECCCCEEECCSC
T ss_pred             eeecCCCc----EEEEE---CCCCEEEeCEEEEccCCccccccc
Confidence            65544432    33433   334679999999999998765433

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.92  E-value=9.2e-06  Score=75.66  Aligned_cols=43  Identities=19%  Similarity=0.183  Sum_probs=38.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||+|||||++|+++|+.|++.|.+|+|+|    +...+||.+..
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E----~~~~~GG~~~~   70 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVD----RRPHIGGNAYD   70 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSSGGGCC
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEe----ccCCCCCccce
Confidence            46899999999999999999999999999999    55677887764

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.90  E-value=9.1e-06  Score=78.25  Aligned_cols=41  Identities=29%  Similarity=0.502  Sum_probs=36.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcce
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL  101 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~  101 (382)
                      ..+||+|||||++|+++|+.|++.|++|+|+|    +...+||.+
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E----~~~~~GG~~   50 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLE----ARTRPGGRV   50 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC----SSSSSCTTC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEe----ccCCCCCce
Confidence            45799999999999999999999999999999    555677764

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.90  E-value=5.5e-05  Score=73.76  Aligned_cols=97  Identities=13%  Similarity=0.161  Sum_probs=69.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------------------------chH--
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------------------------ASK--  244 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------------------------~~~--  244 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                       ...  
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~~ei  101 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQPEI  101 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBHHHH
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCHHHH
Confidence            579999999999999999999999999999865321                                       000  


Q ss_pred             -HHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC--CCCChh
Q 016820          245 -IMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG--HEPATK  308 (382)
Q Consensus       245 -~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G--~~p~~~  308 (382)
                       ...++..++.++  +++.++++.+++.++++. .  +.+..   .++.++.+|.+|+|+|  .+|..+
T Consensus       102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~-~--w~V~~---~~G~~i~ad~lV~AtG~~s~p~~p  164 (549)
T 4ap3_A          102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGL-R--WTVRT---DRGDEVSARFLVVAAGPLSNANTP  164 (549)
T ss_dssp             HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTT-E--EEEEE---TTCCEEEEEEEEECCCSEEECCCC
T ss_pred             HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCC-E--EEEEE---CCCCEEEeCEEEECcCCCCCCCCC
Confidence             111233455676  788899999998766531 1  33433   2335699999999999  555544

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.88  E-value=0.00011  Score=69.92  Aligned_cols=101  Identities=20%  Similarity=0.142  Sum_probs=69.9

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCCc----c------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSFR----A------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~~----~------------------------------------  242 (382)
                      .++|+|||+|+.|+.+|..|.+.|.  +|+++++.+.+.    .                                    
T Consensus         6 ~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~~~~   85 (447)
T 2gv8_A            6 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   85 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccCchh
Confidence            4689999999999999999999999  999999864220    0                                    


Q ss_pred             ----------------------------hH---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCc-eE
Q 016820          243 ----------------------------SK---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VS  290 (382)
Q Consensus       243 ----------------------------~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~-~~  290 (382)
                                                  ..   ..+++..++.+..++++++|..++..+++   ..|++.+..+++ ..
T Consensus        86 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~---~~V~~~~~~~G~~~~  162 (447)
T 2gv8_A           86 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS---WVVTYKGTKAGSPIS  162 (447)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE---EEEEEEESSTTCCEE
T ss_pred             hhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCe---EEEEEeecCCCCeeE
Confidence                                        00   01122233346678889999999887653   234444322232 23


Q ss_pred             EEecCeEEEeeCC--CCChh
Q 016820          291 DLKVSGLFFAIGH--EPATK  308 (382)
Q Consensus       291 ~~~~D~vi~~~G~--~p~~~  308 (382)
                      .+.+|.||+|+|.  .|+.+
T Consensus       163 ~~~~d~VVvAtG~~s~p~~p  182 (447)
T 2gv8_A          163 KDIFDAVSICNGHYEVPYIP  182 (447)
T ss_dssp             EEEESEEEECCCSSSSBCBC
T ss_pred             EEEeCEEEECCCCCCCCCCC
Confidence            7899999999999  66544

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.88  E-value=7.3e-06  Score=77.62  Aligned_cols=34  Identities=15%  Similarity=0.453  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      +++||+|||||++|+++|..|++.|++|+|||+.
T Consensus        21 m~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~   54 (430)
T 3ihm_A           21 MKKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDR   54 (430)
T ss_dssp             --CEEEEECCHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence            4579999999999999999999999999999974

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.85  E-value=1.1e-05  Score=77.70  Aligned_cols=41  Identities=29%  Similarity=0.277  Sum_probs=36.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|    +...+||++.
T Consensus        39 ~~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E----~~~~~GGr~~   79 (495)
T 2vvm_A           39 PWDVIVIGGGYCGLTATRDLTVAGFKTLLLE----ARDRIGGRSW   79 (495)
T ss_dssp             CEEEEEECCBHHHHHHHHHHHHTTCCEEEEC----SSSBSBTTCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCCEEEEe----CCCCCCCcce
Confidence            3799999999999999999999999999999    5567777654

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.84  E-value=1.3e-05  Score=74.19  Aligned_cols=41  Identities=24%  Similarity=0.232  Sum_probs=36.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      +||+|||||++|+++|..|++.|++|+|+|    +...+||.+..
T Consensus         2 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E----~~~~~GG~~~~   42 (367)
T 1i8t_A            2 YDYIIVGSGLFGAVCANELKKLNKKVLVIE----KRNHIGGNAYT   42 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHGGGTCCEEEEC----SSSSSSGGGCE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEe----cCCCCCcceEe
Confidence            689999999999999999999999999999    55567777543

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.83  E-value=1.7e-05  Score=76.30  Aligned_cols=44  Identities=32%  Similarity=0.462  Sum_probs=38.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecccCCCCCCCcceec
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ...+||+|||||++|+++|+.|++.| .+|+|+|    +...+||.+..
T Consensus         7 ~~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E----~~~~~GG~~~~   51 (484)
T 4dsg_A            7 LLTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYE----CNDTPGGLSRS   51 (484)
T ss_dssp             CCSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEE----SSSSSSGGGCE
T ss_pred             ccCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEe----CCCCCCCeeee
Confidence            34689999999999999999999998 8999999    55677887664

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=97.83  E-value=9.3e-06  Score=82.05  Aligned_cols=97  Identities=14%  Similarity=0.175  Sum_probs=68.1

Q ss_pred             cccEEEEC--CcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           58 KTKVCIIG--SGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        58 ~~~vvIIG--aG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      .++|+|||  ||..|+.+|..|++.|.+|+++++.    . .....          .++  .    ....+.+.+++.||
T Consensus       528 gk~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~----~-l~~~~----------~~~--~----~~~~~~~~l~~~GV  586 (729)
T 1o94_A          528 GKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV----H-LANYM----------HFT--L----EYPNMMRRLHELHV  586 (729)
T ss_dssp             CSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS----C-TTHHH----------HHT--T----CHHHHHHHHHHTTC
T ss_pred             CCeEEEEcCCCCchHHHHHHHHHHcCCEEEEEecc----c-ccccc----------ccc--c----cHHHHHHHHHhCCC
Confidence            46899998  9999999999999999999999931    0 00000          000  0    12455666678899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE---CC-eE------------------EEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT---DS-KS------------------VLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~---~~-~~------------------~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ ++.+|+.+  .+.+..   ++ ..                  +.+|.||+|+|..|+..
T Consensus       587 ~i~~~~~v~~i~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~~~  649 (729)
T 1o94_A          587 EELGDHFCSRIEPG--RMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSECT  649 (729)
T ss_dssp             EEECSEEEEEEETT--EEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEECCH
T ss_pred             EEEcCcEEEEEECC--eEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCChH
Confidence            99998 68888743  344432   22 22                  89999999999988754

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.83  E-value=1.3e-05  Score=74.00  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||||++|+++|++|++.|++|+|+|+.
T Consensus         5 ~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            4579999999999999999999999999999964

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=97.83  E-value=1.8e-05  Score=75.40  Aligned_cols=95  Identities=19%  Similarity=0.172  Sum_probs=61.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..++|+|||||..|+.+|..+.++|.+ |+++++.               ....+|..     ..+     .+.+.+.|+
T Consensus       263 ~gk~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~---------------~~~~~p~~-----~~e-----~~~~~~~Gv  317 (456)
T 2vdc_G          263 AGKHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRR---------------DRKNMPGS-----QRE-----VAHAEEEGV  317 (456)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS---------------CSTTCSSC-----HHH-----HHHHHHTTC
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCCEEEEEEeC---------------CccCCCCC-----HHH-----HHHHHHCCC
Confidence            457899999999999999999999985 9999841               00011211     122     234566799


Q ss_pred             EEEEe-eEEEEEecCC--cEEEE-------------------ECCeEEEcCEEEEccCCCCcC
Q 016820          136 QIFTE-TVSKVDFKSR--PFKVF-------------------TDSKSVLADTVIVATGAVAKK  176 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~--~~~v~-------------------~~~~~~~~d~lvlA~G~~~~~  176 (382)
                      +++.+ .+.++..+++  .+.+.                   .+..++.+|.||+|+|..|+.
T Consensus       318 ~~~~~~~~~~i~~~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~aD~Vi~A~G~~p~~  380 (456)
T 2vdc_G          318 EFIWQAAPEGFTGDTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQADLVIKALGFEPED  380 (456)
T ss_dssp             EEECCSSSCCEEEEEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred             EEEeCCCceEEeCCCcEEEEEEEEEEecccCCcCCccccccCCcEEEEECCEEEECCCCCCCc
Confidence            98776 4545543211  11111                   112358999999999998864

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.82  E-value=7.8e-05  Score=69.74  Aligned_cols=93  Identities=15%  Similarity=0.169  Sum_probs=69.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------------------c-------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------A-------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------~-------------------------  242 (382)
                      .+|+|||+|..|+.+|..+.+.|.+|+++++.+.+.                  .                         
T Consensus         5 ~dViIIGgG~aGl~aA~~la~~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (401)
T 2gqf_A            5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (401)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHHHH
Confidence            469999999999999999999999999999876430                  0                         


Q ss_pred             -----------------------hH---HHHHHhccCCCcEEEcCceeEEEEec----CCceeeeeEEEEeccCCceEEE
Q 016820          243 -----------------------SK---IMQNRALTNPKIDVIWNSVVLEAYGE----GDKKVLGGLKVKNLVTGQVSDL  292 (382)
Q Consensus       243 -----------------------~~---~~~~~~l~~~gv~~~~~~~v~~i~~~----~~g~~~~~v~~~~~~~~~~~~~  292 (382)
                                             ..   ..+.+.+++.|++++.++.+.++..+    +++     +.+..   .++ .+
T Consensus        85 ~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-----~~v~~---~~g-~i  155 (401)
T 2gqf_A           85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-----FVLQV---NST-QW  155 (401)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-----EEEEE---TTE-EE
T ss_pred             HHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-----EEEEE---CCC-EE
Confidence                                   00   01122344578999999999999866    332     44544   233 69


Q ss_pred             ecCeEEEeeCCCCCh
Q 016820          293 KVSGLFFAIGHEPAT  307 (382)
Q Consensus       293 ~~D~vi~~~G~~p~~  307 (382)
                      .+|.||+|+|..+.+
T Consensus       156 ~ad~VVlAtG~~s~p  170 (401)
T 2gqf_A          156 QCKNLIVATGGLSMP  170 (401)
T ss_dssp             EESEEEECCCCSSCG
T ss_pred             ECCEEEECCCCccCC
Confidence            999999999999843

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.82  E-value=1.3e-05  Score=76.83  Aligned_cols=40  Identities=35%  Similarity=0.524  Sum_probs=34.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcce
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQL  101 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~  101 (382)
                      .+||+|||||++|+++|+.|++.|  ++|+|+|+    ...+||.+
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~----~~~~GG~~   45 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEA----GERLGGKV   45 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECS----SSSSBTTC
T ss_pred             cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEEC----CCCCCcee
Confidence            479999999999999999999999  99999994    44555543

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.82  E-value=6.3e-05  Score=69.77  Aligned_cols=91  Identities=21%  Similarity=0.171  Sum_probs=68.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h---------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S---------------------  243 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~---------------------  243 (382)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.+..                    .                     
T Consensus        11 ~~dVvIVGaG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~~   90 (379)
T 3alj_A           11 TRRAEVAGGGFAGLTAAIALKQNGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWMHNKS   90 (379)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEETTEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEeCCce
Confidence            46899999999999999999999999999998765410                    0                     


Q ss_pred             -------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          244 -------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       244 -------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                         ...+.+.+.+.|++++.++++.+++. + +    .|++.+   +  .++.+|.||.|+|..
T Consensus        91 ~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~-~-~----~v~~~~---g--~~~~ad~vV~AdG~~  159 (379)
T 3alj_A           91 VSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADP-V-G----RLTLQT---G--EVLEADLIVGADGVG  159 (379)
T ss_dssp             EEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEET-T-T----EEEETT---S--CEEECSEEEECCCTT
T ss_pred             eeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEe-C-C----EEEECC---C--CEEEcCEEEECCCcc
Confidence                               11112334456899999999999987 2 2    254432   3  468999999999987


Q ss_pred             CC
Q 016820          305 PA  306 (382)
Q Consensus       305 p~  306 (382)
                      +.
T Consensus       160 s~  161 (379)
T 3alj_A          160 SK  161 (379)
T ss_dssp             CH
T ss_pred             HH
Confidence            64

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.80  E-value=9.5e-05  Score=69.05  Aligned_cols=93  Identities=12%  Similarity=0.134  Sum_probs=67.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------ch----------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------AS----------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~----------------------  243 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                    ..                      
T Consensus         7 ~dVvIVGaG~aGl~~A~~L~~~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~g~~   86 (399)
T 2x3n_A            7 IDVLINGCGIGGAMLAYLLGRQGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHDGEL   86 (399)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEETTEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCCCCE
Confidence            479999999999999999999999999998765430                    00                      


Q ss_pred             -----------------------HHHHHHhccCC-CcEEEcCceeEEEEecCCceeeeeE--EEEeccCCceEEEecCeE
Q 016820          244 -----------------------KIMQNRALTNP-KIDVIWNSVVLEAYGEGDKKVLGGL--KVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       244 -----------------------~~~~~~~l~~~-gv~~~~~~~v~~i~~~~~g~~~~~v--~~~~~~~~~~~~~~~D~v  297 (382)
                                             ...+.+.+++. |++++.++++.+++.++++     +  .+..   .++..+.+|.|
T Consensus        87 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-----v~g~v~~---~~g~~~~ad~v  158 (399)
T 2x3n_A           87 LRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERH-----AIDQVRL---NDGRVLRPRVV  158 (399)
T ss_dssp             EEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTS-----CEEEEEE---TTSCEEEEEEE
T ss_pred             EEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCc-----eEEEEEE---CCCCEEECCEE
Confidence                                   00011223444 8999999999999987764     3  3433   12247899999


Q ss_pred             EEeeCCCCC
Q 016820          298 FFAIGHEPA  306 (382)
Q Consensus       298 i~~~G~~p~  306 (382)
                      |.|+|..+.
T Consensus       159 V~AdG~~s~  167 (399)
T 2x3n_A          159 VGADGIASY  167 (399)
T ss_dssp             EECCCTTCH
T ss_pred             EECCCCChH
Confidence            999998653

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.78  E-value=1.8e-05  Score=73.71  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=36.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .+||+|||||++|+++|..|++.|++|+|+|    +...+||.+..
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E----~~~~~GG~~~~   44 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAEKGHQVHIID----QRDHIGGNSYD   44 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEE----SSSSSSGGGCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEE----ecCCcCCcccc
Confidence            3699999999999999999999999999999    55677877643

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.78  E-value=0.00012  Score=72.03  Aligned_cols=98  Identities=20%  Similarity=0.142  Sum_probs=71.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-------------------c-----------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-------------------A-----------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-------------------~-----------------------  242 (382)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+...                   .                       
T Consensus        23 ~~DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~~~~G~~l~p~~~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  102 (591)
T 3i3l_A           23 RSKVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSATFLWGQDQ  102 (591)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSCCCCCCBCCHHHHHHHHHTTCHHHHHHHCCEEECEEEEECSSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCCCceeeeECHHHHHHHHHcCCcHHHHhcCCcccCCcEEEecCCC
Confidence            4689999999999999999999999999999873210                   0                       


Q ss_pred             -----------------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          243 -----------------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       243 -----------------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                                             .    ...+.+.+++.|++++.++++.++..++++  ...|.+.+  .+....+.+|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~~g~--~~~V~~~~--~G~~~~i~Ad  178 (591)
T 3i3l_A          103 APWTFSFAAPKVAPWVFDHAVQVKREEFDKLLLDEARSRGITVHEETPVTDVDLSDPD--RVVLTVRR--GGESVTVESD  178 (591)
T ss_dssp             CCEEEECCCC--CTTCCSCEEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEECCSTT--CEEEEEEE--TTEEEEEEES
T ss_pred             ccceeecccccccccccCeeEEEcHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC--EEEEEEec--CCceEEEEcC
Confidence                                   0    001122344579999999999999876332  33455553  2444679999


Q ss_pred             eEEEeeCCCCC
Q 016820          296 GLFFAIGHEPA  306 (382)
Q Consensus       296 ~vi~~~G~~p~  306 (382)
                      .||.|+|....
T Consensus       179 lVV~AdG~~S~  189 (591)
T 3i3l_A          179 FVIDAGGSGGP  189 (591)
T ss_dssp             EEEECCGGGCH
T ss_pred             EEEECCCCcch
Confidence            99999998763

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.77  E-value=1.7e-05  Score=76.59  Aligned_cols=41  Identities=29%  Similarity=0.438  Sum_probs=36.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      .+||+|||||++|+++|+.|++.|++|+|+|    +...+||.+.
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E----~~~~~GG~~~   53 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFE----AEGKAGGKLR   53 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEEC----SSSSSCSSCC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEE----eCCCCCCcee
Confidence            5799999999999999999999999999999    5566777653

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.75  E-value=2e-05  Score=76.05  Aligned_cols=42  Identities=31%  Similarity=0.415  Sum_probs=36.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      .++||+|||||++|+++|..|++.|++|+|+|    ....+||.+.
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE----~~~~~gg~~~   73 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLE----ASERPGGRVR   73 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEEC----SSSSSBTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEE----CCCCCCCcee
Confidence            35799999999999999999999999999999    4556777653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.75  E-value=0.00015  Score=70.21  Aligned_cols=97  Identities=25%  Similarity=0.291  Sum_probs=71.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------ch----------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------AS----------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------~~----------------------  243 (382)
                      .+|+|||+|..|+-+|..|.+.|.+|+++++.+...                    ..                      
T Consensus         8 ~dVvIVGgG~aGl~aA~~La~~G~~V~liE~~~~~~~~~g~~~~~~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~   87 (512)
T 3e1t_A            8 FDLIVIGGGPGGSTLASFVAMRGHRVLLLEREAFPRHQIGESLLPATVHGICAMLGLTDEMKRAGFPIKRGGTFRWGKEP   87 (512)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCHHHHTTHHHHTTCHHHHHTTTCCEECEEEEECSSCS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEccCCCCCCCCCcccCcchHHHHHHHhCcHHHHHHcCCccccCceEEecCCc
Confidence            479999999999999999999999999999876210                    00                      


Q ss_pred             --------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeE
Q 016820          244 --------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGL  297 (382)
Q Consensus       244 --------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~v  297 (382)
                                                ...+.+.+.+.|++++.++++.++..+++.  +.++.+.. .+++...+.+|+|
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~~~~--v~gv~~~~-~dG~~~~i~ad~V  164 (512)
T 3e1t_A           88 EPWTFGFTRHPDDPYGFAYQVERARFDDMLLRNSERKGVDVRERHEVIDVLFEGER--AVGVRYRN-TEGVELMAHARFI  164 (512)
T ss_dssp             SCEEEESSSSSSSTTCCEEBCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEETTE--EEEEEEEC-SSSCEEEEEEEEE
T ss_pred             cccccccccCCCCCcceeeEecHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEECCE--EEEEEEEe-CCCCEEEEEcCEE
Confidence                                      001112334479999999999999987653  44566654 2233357999999


Q ss_pred             EEeeCCCC
Q 016820          298 FFAIGHEP  305 (382)
Q Consensus       298 i~~~G~~p  305 (382)
                      |.|+|...
T Consensus       165 I~AdG~~S  172 (512)
T 3e1t_A          165 VDASGNRT  172 (512)
T ss_dssp             EECCCTTC
T ss_pred             EECCCcch
Confidence            99999975

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.72  E-value=0.00012  Score=71.34  Aligned_cols=97  Identities=14%  Similarity=0.101  Sum_probs=69.0

Q ss_pred             CcEEEEcCCchHHHHHHHHh-hcCCEEEEEEeCCCCcc---------------------------------------h--
Q 016820          206 KPLAVIGGGDSAMEEANFLT-KYGSKVYIIHRRDSFRA---------------------------------------S--  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~-~~g~~v~~~~~~~~~~~---------------------------------------~--  243 (382)
                      .+|+|||+|..|+.+|..|. +.|.+|+++++.+.+..                                       .  
T Consensus         9 ~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~e   88 (540)
T 3gwf_A            9 VDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYITQPE   88 (540)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEEHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCCHHH
Confidence            47999999999999999999 99999999998653310                                       0  


Q ss_pred             -HHHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC--CCChh
Q 016820          244 -KIMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH--EPATK  308 (382)
Q Consensus       244 -~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~--~p~~~  308 (382)
                       ....++..++.|+  +++.++++.+++.++++. .  +.+..   .++..+.+|.+|+|+|.  +|..+
T Consensus        89 i~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~-~--~~V~~---~~G~~i~ad~lV~AtG~~s~p~~p  152 (540)
T 3gwf_A           89 ILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDEN-L--WEVTT---DHGEVYRAKYVVNAVGLLSAINFP  152 (540)
T ss_dssp             HHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTT-E--EEEEE---TTSCEEEEEEEEECCCSCCSBCCC
T ss_pred             HHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCC-E--EEEEE---cCCCEEEeCEEEECCcccccCCCC
Confidence             0111234455677  788899999998876521 1  33443   22357899999999995  55443

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.72  E-value=0.00015  Score=67.67  Aligned_cols=94  Identities=14%  Similarity=0.114  Sum_probs=67.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC-c-------ch---HHHHHH------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF-R-------AS---KIMQNR------------------------  249 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~-~-------~~---~~~~~~------------------------  249 (382)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.. .       ..   ...+++                        
T Consensus         5 ~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~g~   84 (397)
T 2vou_A            5 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   84 (397)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccccccccChhHHHHHHHcCCccccccccccceEEEecCCCC
Confidence            468999999999999999999999999999987653 0       00   011111                        


Q ss_pred             -------------------hccC--CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          250 -------------------ALTN--PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       250 -------------------~l~~--~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                                         .|.+  .++++++++++.+++.++++     +.+..   .++..+.+|+||.|.|....
T Consensus        85 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~i~~~~~v~~i~~~~~~-----v~v~~---~~g~~~~ad~vV~AdG~~S~  154 (397)
T 2vou_A           85 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-----VQMRF---SDGTKAEANWVIGADGGASV  154 (397)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-----EEEEE---TTSCEEEESEEEECCCTTCH
T ss_pred             ccccccCcccccCHHHHHHHHHHhCCCcEEEcCCEEEEEEecCCE-----EEEEE---CCCCEEECCEEEECCCcchh
Confidence                               0100  26788889999999887664     44444   22356899999999998643

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.72  E-value=0.0001  Score=70.26  Aligned_cols=32  Identities=16%  Similarity=0.176  Sum_probs=28.7

Q ss_pred             cccEEEECCcHHHHHHHHHHH--------------------HcCC-CeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAA--------------------RAEL-KPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~--------------------~~g~-~v~lie~   89 (382)
                      .++|+|||+|..|+.+|..|+                    +.|. +|+|+++
T Consensus       145 ~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r  197 (460)
T 1cjc_A          145 CDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGR  197 (460)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEc
Confidence            578999999999999999999                    5687 6999984

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.71  E-value=0.00013  Score=71.10  Aligned_cols=97  Identities=21%  Similarity=0.185  Sum_probs=66.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------------------------chH--
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------------------------ASK--  244 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------------------------~~~--  244 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                                       ...  
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~~~ei   89 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFASQPEM   89 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCCHHHH
Confidence            579999999999999999999999999999875420                                       001  


Q ss_pred             -HHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC--CCCChh
Q 016820          245 -IMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG--HEPATK  308 (382)
Q Consensus       245 -~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G--~~p~~~  308 (382)
                       ...++..++.++  .++.++++.+++.++++. .  ..+..   .++..+.+|.+|+|+|  .+|..+
T Consensus        90 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~--w~V~~---~~G~~~~ad~lV~AtG~~s~p~~p  152 (545)
T 3uox_A           90 LRYVNRAADAMDVRKHYRFNTRVTAARYVENDR-L--WEVTL---DNEEVVTCRFLISATGPLSASRMP  152 (545)
T ss_dssp             HHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGT-E--EEEEE---TTTEEEEEEEEEECCCSCBC---C
T ss_pred             HHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCC-E--EEEEE---CCCCEEEeCEEEECcCCCCCCcCC
Confidence             111233344455  678899999998765421 1  33433   2336799999999999  566544

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.71  E-value=0.0002  Score=68.15  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=70.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---------h---------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---------S---------------------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---------~---------------------------------  243 (382)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+....         .                                 
T Consensus         7 ~dVvIVGaG~aGl~aA~~La~~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~~~~   86 (453)
T 3atr_A            7 YDVLIIGGGFAGSSAAYQLSRRGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPDMQT   86 (453)
T ss_dssp             CSEEEECCSHHHHHHHHHHSSSSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTTSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCCCce
Confidence            4799999999999999999999999999997653200         0                                 


Q ss_pred             -------------HHH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          244 -------------KIM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       244 -------------~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                                   ..+   +.+.+.+.|++++.++++.++..++++  +.+|.+.+..+++...+.+|.||.|+|..+
T Consensus        87 ~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~--v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A           87 VWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGY--VKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             EEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTE--EEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             EEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCE--EEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence                         001   112223468999999999999886653  444666542124445799999999999765

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.70  E-value=4.9e-05  Score=69.67  Aligned_cols=32  Identities=19%  Similarity=0.318  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC------CCeEEEecc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE------LKPILFEGW   90 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g------~~v~lie~~   90 (382)
                      +||+|||||++|+++|+.|++.|      .+|+|+|+.
T Consensus         1 mdVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~   38 (351)
T 3g3e_A            1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADR   38 (351)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECC
Confidence            48999999999999999999998      999999963

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.69  E-value=0.0001  Score=69.32  Aligned_cols=95  Identities=20%  Similarity=0.255  Sum_probs=69.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------ch---------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------AS---------------------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------~~---------------------------------  243 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+...         ..                                 
T Consensus         6 ~dVvIIGgG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~   85 (421)
T 3nix_A            6 VDVLVIGAGPAGTVAASLVNKSGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGKEIA   85 (421)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETTEEE
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCCeeE
Confidence            479999999999999999999999999999875210         00                                 


Q ss_pred             ------------------------HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEE
Q 016820          244 ------------------------KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFF  299 (382)
Q Consensus       244 ------------------------~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~  299 (382)
                                              ..+ .+.+++.|++++.++++.++..++++.   .+.+.+ .+++..++.+|.||.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~r~~~~~~L-~~~a~~~gv~i~~~~~v~~i~~~~~~~---~v~v~~-~~g~~~~~~a~~vV~  160 (421)
T 3nix_A           86 DFNFSDQFSNGWNWTWQVPRGNFDKTL-ADEAARQGVDVEYEVGVTDIKFFGTDS---VTTIED-INGNKREIEARFIID  160 (421)
T ss_dssp             EEETTSCSSCSCCCEEECCHHHHHHHH-HHHHHHHTCEEECSEEEEEEEEETTEE---EEEEEE-TTSCEEEEEEEEEEE
T ss_pred             EEeehhhcCCCCCceeEECHHHHHHHH-HHHHHhCCCEEEcCCEEEEEEEeCCEE---EEEEEc-CCCCEEEEEcCEEEE
Confidence                                    011 122334589999999999999876642   134443 224334799999999


Q ss_pred             eeCCCC
Q 016820          300 AIGHEP  305 (382)
Q Consensus       300 ~~G~~p  305 (382)
                      |+|..+
T Consensus       161 A~G~~s  166 (421)
T 3nix_A          161 ASGYGR  166 (421)
T ss_dssp             CCGGGC
T ss_pred             CCCCch
Confidence            999875

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.66  E-value=0.00029  Score=65.68  Aligned_cols=35  Identities=31%  Similarity=0.306  Sum_probs=31.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            47999999999999999999999999999876643

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.66  E-value=0.00012  Score=66.75  Aligned_cols=89  Identities=13%  Similarity=0.128  Sum_probs=63.8

Q ss_pred             cEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCCCCc-------------------------------chHH-------
Q 016820          207 PLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRDSFR-------------------------------ASKI-------  245 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~~~~-------------------------------~~~~-------  245 (382)
                      +|+|||+|..|+-+|..|.+   .|.+|+++++.+...                               ....       
T Consensus         3 dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~~~~~~~~~~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~~   82 (342)
T 3qj4_A            3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRMTTACSPHNPQCTADLGAQYITCTPHYAKKHQRFYDELLA   82 (342)
T ss_dssp             EEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGGCEEECSSCTTCEEESSCCCEEECSSHHHHTHHHHHHHHH
T ss_pred             cEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccceeeeecCCCCCceEecCCceEEcCchHHHHHHHHHHHHHh
Confidence            69999999999999999999   899999998764320                               0000       


Q ss_pred             -------------------------------HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          246 -------------------------------MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       246 -------------------------------~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                                                     +.+.+.+..|++++++++|.+|..++++     +.+..   .++..+.+
T Consensus        83 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~g~~i~~~~~V~~i~~~~~~-----~~v~~---~~g~~~~a  154 (342)
T 3qj4_A           83 YGVLRPLSSPIEGMVMKEGDCNFVAPQGISSIIKHYLKESGAEVYFRHRVTQINLRDDK-----WEVSK---QTGSPEQF  154 (342)
T ss_dssp             TTSCEECCSCEETCCC--CCEEEECTTCTTHHHHHHHHHHTCEEESSCCEEEEEECSSS-----EEEEE---SSSCCEEE
T ss_pred             CCCeecCchhhcceeccCCccceecCCCHHHHHHHHHHhcCCEEEeCCEEEEEEEcCCE-----EEEEE---CCCCEEEc
Confidence                                           0011111227899999999999987765     55554   22345799


Q ss_pred             CeEEEeeCC
Q 016820          295 SGLFFAIGH  303 (382)
Q Consensus       295 D~vi~~~G~  303 (382)
                      |.||++++.
T Consensus       155 d~vV~A~p~  163 (342)
T 3qj4_A          155 DLIVLTMPV  163 (342)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEECCCH
Confidence            999999873

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.66  E-value=0.00027  Score=66.18  Aligned_cols=93  Identities=17%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h--------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S--------------------  243 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~--------------------  243 (382)
                      ...+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..                    .                    
T Consensus        22 ~~~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~  101 (407)
T 3rp8_A           22 GHMKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMGDIMETFGGPLRRMAYRDFRS  101 (407)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC----CEEEECHHHHHHHHHTTCHHHHHHHSCCCCEEEEEETTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCHHHHHhhcCCCcceEEEECCC
Confidence            346899999999999999999999999999998775410                    0                    


Q ss_pred             ---------H----------------HH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC
Q 016820          244 ---------K----------------IM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS  295 (382)
Q Consensus       244 ---------~----------------~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D  295 (382)
                               .                .+   +.+.+.+  +++++++++++++.++++     +.+..   .++..+.+|
T Consensus       102 g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~~--~~i~~~~~v~~i~~~~~~-----v~v~~---~~g~~~~a~  171 (407)
T 3rp8_A          102 GENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWGR--DSVQFGKRVTRCEEDADG-----VTVWF---TDGSSASGD  171 (407)
T ss_dssp             CCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHCG--GGEEESCCEEEEEEETTE-----EEEEE---TTSCEEEES
T ss_pred             CCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCCc--CEEEECCEEEEEEecCCc-----EEEEE---cCCCEEeeC
Confidence                     0                00   0111222  678889999999888764     55544   233579999


Q ss_pred             eEEEeeCCCCC
Q 016820          296 GLFFAIGHEPA  306 (382)
Q Consensus       296 ~vi~~~G~~p~  306 (382)
                      +||.|.|....
T Consensus       172 ~vV~AdG~~S~  182 (407)
T 3rp8_A          172 LLIAADGSHSA  182 (407)
T ss_dssp             EEEECCCTTCS
T ss_pred             EEEECCCcChH
Confidence            99999998753

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=97.65  E-value=0.00018  Score=68.54  Aligned_cols=116  Identities=13%  Similarity=0.109  Sum_probs=67.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc--------------------CC-CeEEEecccCCCCCCCcceecC--CCcccCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA--------------------EL-KPILFEGWMANDIAPGGQLTTT--SDVENFPGF  113 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~--------------------g~-~v~lie~~~~~~~~~gg~~~~~--~~~~~~~~~  113 (382)
                      ...+|+|||+|..|+.+|..|++.                    |. +|+|+++..    .....+...  .....+|+.
T Consensus       146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~----~~~~~f~~~elrel~~lp~~  221 (456)
T 1lqt_A          146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRG----PLQAAFTTLELRELADLDGV  221 (456)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSC----GGGCCCCHHHHHHGGGCTTE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCC----hhhhccChHHHHHhhcCCCc
Confidence            357899999999999999999874                    54 899999421    000000000  000011110


Q ss_pred             -----CCCC---C----------hHHHHHHHHHHHHH------cCcEEEEe-eEEEEEecCC--cEEEEE----------
Q 016820          114 -----PQGI---L----------GGDLMDRCRNQSLR------FGTQIFTE-TVSKVDFKSR--PFKVFT----------  156 (382)
Q Consensus       114 -----~~~~---~----------~~~~~~~~~~~~~~------~gi~~~~~-~v~~i~~~~~--~~~v~~----------  156 (382)
                           +..+   .          ...+.+.+.+.+.+      .+|+++.+ .+.+|..+++  .+.+..          
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~gv~i~~~~~~~~i~~~~~v~~v~~~~~~~~~~~~~~  301 (456)
T 1lqt_A          222 DVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHRRMVFRFLTSPIEIKGKRKVERIVLGRNELVSDGSGR  301 (456)
T ss_dssp             EEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC-CTTSEEEEEECSEEEEEEECSSSCCEEEEEEEEEEECSSSS
T ss_pred             eeeeChHHhccchhhhhhhccHHHHHHHHHHHHHhhcCCCCCCceEEEEeCCCCeEEecCCcEeEEEEEEEEecCCCccc
Confidence                 0000   0          01123445555555      68999888 6888876532  133331          


Q ss_pred             -----CC--eEEEcCEEEEccCCCCcC
Q 016820          157 -----DS--KSVLADTVIVATGAVAKK  176 (382)
Q Consensus       157 -----~~--~~~~~d~lvlA~G~~~~~  176 (382)
                           ++  .++.+|.||+|+|.+|+.
T Consensus       302 ~~~~~~g~~~~i~~d~vi~a~G~~p~~  328 (456)
T 1lqt_A          302 VAAKDTGEREELPAQLVVRSVGYRGVP  328 (456)
T ss_dssp             EEEEEEEEEEEEECSEEEECSCEECCC
T ss_pred             ccccCCCceEEEEcCEEEEccccccCC
Confidence                 22  358999999999998876

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.64  E-value=0.00023  Score=74.57  Aligned_cols=93  Identities=22%  Similarity=0.211  Sum_probs=62.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..+|+|||||..|+.+|..+.++|. +|+++++.               ....++.     ...++     +.+++.|++
T Consensus       332 ~~~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~---------------~~~~~~~-----~~~e~-----~~~~~~Gv~  386 (1025)
T 1gte_A          332 RGAVIVLGAGDTAFDCATSALRCGARRVFLVFRK---------------GFVNIRA-----VPEEV-----ELAKEEKCE  386 (1025)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSS---------------CGGGCCS-----CHHHH-----HHHHHTTCE
T ss_pred             CCcEEEECCChHHHHHHHHHHHcCCCEEEEEEec---------------ChhhCCC-----CHHHH-----HHHHHcCCE
Confidence            4589999999999999999999997 89999941               0001111     12222     345677999


Q ss_pred             EEEe-eEEEEEecCCcEE-EEE--------------CC--eEEEcCEEEEccCCCCc
Q 016820          137 IFTE-TVSKVDFKSRPFK-VFT--------------DS--KSVLADTVIVATGAVAK  175 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~-v~~--------------~~--~~~~~d~lvlA~G~~~~  175 (382)
                      ++.+ .+.++..+++.+. +..              ++  .++.+|.||+|+|..|.
T Consensus       387 ~~~~~~~~~i~~~~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~Vi~A~G~~~~  443 (1025)
T 1gte_A          387 FLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFGSVLR  443 (1025)
T ss_dssp             EECSEEEEEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSCEECC
T ss_pred             EEeCCCceEEEccCCeEEEEEEEEeEEcCCCCcccCCCceEEEECCEEEECCCCCCC
Confidence            9876 5666665443321 111              11  35899999999999763

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.61  E-value=5.8e-05  Score=71.45  Aligned_cols=42  Identities=14%  Similarity=0.208  Sum_probs=37.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .+||+|||+|++|+.+|..|++.|++|+++|    +...+||.+..
T Consensus         6 ~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e----~~~~~gg~~~s   47 (433)
T 1d5t_A            6 EYDVIVLGTGLTECILSGIMSVNGKKVLHMD----RNPYYGGESSS   47 (433)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCTTSCE
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEe----cCCCccccccc
Confidence            5799999999999999999999999999999    55677777654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.54  E-value=7.4e-05  Score=71.04  Aligned_cols=42  Identities=17%  Similarity=0.201  Sum_probs=36.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..+||+|||+|.+|+.+|..|++.|.+|+++|    +....||.+.
T Consensus        19 ~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e----~~~~~Gg~~~   60 (475)
T 3p1w_A           19 EHYDVIILGTGLKECILSGLLSHYGKKILVLD----RNPYYGGETA   60 (475)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEe----ccCCCCCCcc
Confidence            45899999999999999999999999999999    5556777654

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.51  E-value=0.00055  Score=67.12  Aligned_cols=99  Identities=19%  Similarity=0.244  Sum_probs=71.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----------------------------------------  243 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----------------------------------------  243 (382)
                      ..+|+|||+|..|+..|..+.+.|.+|+++++.+.+...                                         
T Consensus       126 ~~DVvVVGaG~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (571)
T 1y0p_A          126 TVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNIND  205 (571)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCceEEeCCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            358999999999999999999999999999876643100                                         


Q ss_pred             -------------------------------------------------HHH---HHHhccCCCcEEEcCceeEEEEecC
Q 016820          244 -------------------------------------------------KIM---QNRALTNPKIDVIWNSVVLEAYGEG  271 (382)
Q Consensus       244 -------------------------------------------------~~~---~~~~l~~~gv~~~~~~~v~~i~~~~  271 (382)
                                                                       ..+   +.+.+++.||++++++++.++..++
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~g~~~g~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~  285 (571)
T 1y0p_A          206 PALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDD  285 (571)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECT
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCCCccCcccCCcCCCeeEecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEeeEeEEcC
Confidence                                                             000   0112334689999999999998865


Q ss_pred             CceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       272 ~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +|+ +.+|.+.+ .+++...+.+|.||+|+|...
T Consensus       286 ~g~-v~Gv~~~~-~~g~~~~i~a~~VVlAtGg~~  317 (571)
T 1y0p_A          286 KGT-VKGILVKG-MYKGYYWVKADAVILATGGFA  317 (571)
T ss_dssp             TSC-EEEEEEEE-TTTEEEEEECSEEEECCCCCT
T ss_pred             CCe-EEEEEEEe-CCCcEEEEECCeEEEeCCCcc
Confidence            332 55677664 124445789999999998753

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.50  E-value=8.2e-05  Score=71.19  Aligned_cols=33  Identities=21%  Similarity=0.408  Sum_probs=29.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ..+||+|||||++|+.+|..|++.|+ +|+|+|+
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~   36 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSEAGITDLLILEA   36 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeC
Confidence            35799999999999999999999998 8999995

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.50  E-value=0.00039  Score=64.66  Aligned_cols=97  Identities=15%  Similarity=0.160  Sum_probs=68.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC------c----------------c---------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------R----------------A---------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~------~----------------~---------------------  242 (382)
                      .+|+|||+|+.|+.+|..|.+.|.+|+++++.+..      .                .                     
T Consensus         3 ~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~~~~g~l~~~~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~   82 (394)
T 1k0i_A            3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAGQ   82 (394)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETTE
T ss_pred             ccEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCcccCCCceEeECHHHHHHHHHcCCcHHHHhcCCccceEEEEECCc
Confidence            36999999999999999999999999999977631      0                0                     


Q ss_pred             ------------------h-HHHH---HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEe
Q 016820          243 ------------------S-KIMQ---NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFA  300 (382)
Q Consensus       243 ------------------~-~~~~---~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~  300 (382)
                                        . ..+.   .+.+.+.|++++.++++.++..++++.  ..+++..  +++..++.+|+||.|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~--~~v~~~~--~g~~~~~~a~~vV~A  158 (394)
T 1k0i_A           83 RRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGER--PYVTFER--DGERLRLDCDYIAGC  158 (394)
T ss_dssp             EEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSS--CEEEEEE--TTEEEEEECSEEEEC
T ss_pred             eEEeccccccCCCceEEechHHHHHHHHHHHHhcCCeEEeceeEEEEEEecCCc--eEEEEec--CCcEEEEEeCEEEEC
Confidence                              0 0011   112334589999999999998764321  1244422  243347999999999


Q ss_pred             eCCCCC
Q 016820          301 IGHEPA  306 (382)
Q Consensus       301 ~G~~p~  306 (382)
                      .|....
T Consensus       159 dG~~S~  164 (394)
T 1k0i_A          159 DGFHGI  164 (394)
T ss_dssp             CCTTCS
T ss_pred             CCCCcH
Confidence            998764

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=97.49  E-value=8.2e-05  Score=74.33  Aligned_cols=41  Identities=32%  Similarity=0.323  Sum_probs=35.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ  100 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~  100 (382)
                      ...++|+|||||++|+++|+.|.+.|++|+|+|+    ...+||.
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~----~~~~gg~  145 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEA----RDRVGGR  145 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECS----SSSSBTT
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEec----CCCCCCc
Confidence            3458999999999999999999999999999994    4455554

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.49  E-value=0.00045  Score=67.68  Aligned_cols=98  Identities=17%  Similarity=0.185  Sum_probs=70.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      ..|+|||+|..|+..|..|.+.|.+|+++++.+.+..                                           
T Consensus       122 ~DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~s~~s~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~~~~~~~~  201 (566)
T 1qo8_A          122 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI  201 (566)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCceeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCCH
Confidence            4799999999999999999999999999987663310                                           


Q ss_pred             -----------------------------------------------hH---HHHHHhccCCCcEEEcCceeEEEEecCC
Q 016820          243 -----------------------------------------------SK---IMQNRALTNPKIDVIWNSVVLEAYGEGD  272 (382)
Q Consensus       243 -----------------------------------------------~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~  272 (382)
                                                                     ..   ..+.+.+++.||+++.++++.++..+++
T Consensus       202 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~r~~~~~~~~~~~~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~  281 (566)
T 1qo8_A          202 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  281 (566)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             HHHHHHHhccHHHHHHHHhcCCccccccccCCCCCCceeecCCCCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEECCC
Confidence                                                           00   0011223456899999999999987762


Q ss_pred             ceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          273 KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       273 g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      |+ +.+|.+.+ .+++...+.+|.||+|+|...
T Consensus       282 g~-v~Gv~~~~-~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          282 HS-VVGAVVHG-KHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             SB-EEEEEEEE-TTTEEEEEEEEEEEECCCCCT
T ss_pred             Cc-EEEEEEEe-CCCcEEEEEcCEEEEecCCcc
Confidence            32 55677764 224344789999999998754

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.48  E-value=0.00036  Score=66.28  Aligned_cols=93  Identities=18%  Similarity=0.256  Sum_probs=68.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+..                                           
T Consensus        27 ~dVvIIGgG~aGl~aA~~la~~G~~V~llEk~~~~g~~~~~sg~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  106 (447)
T 2i0z_A           27 YDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNED  106 (447)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHH
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEECCCCCCceeEEeCCCceeccCcccHHHHHHHhccChHHHHHHHHhcCHHH
Confidence            4799999999999999999999999999997653210                                           


Q ss_pred             --------------------------hHHH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEe
Q 016820          243 --------------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLK  293 (382)
Q Consensus       243 --------------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~  293 (382)
                                                ...+   +.+.+++.||+++.++++.++..++++  +..|.+.+   +  ..+.
T Consensus       107 ~~~~~~~~G~~~~~~~~g~~~p~~~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~--v~~V~~~~---G--~~i~  179 (447)
T 2i0z_A          107 IITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQ--TKAVILQT---G--EVLE  179 (447)
T ss_dssp             HHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTE--EEEEEETT---C--CEEE
T ss_pred             HHHHHHhcCCceEEeeCCEEECCCCCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCc--EEEEEECC---C--CEEE
Confidence                                      0000   112234579999999999999876542  33444432   3  3699


Q ss_pred             cCeEEEeeCCCC
Q 016820          294 VSGLFFAIGHEP  305 (382)
Q Consensus       294 ~D~vi~~~G~~p  305 (382)
                      +|.||+|+|..+
T Consensus       180 Ad~VVlAtGg~s  191 (447)
T 2i0z_A          180 TNHVVIAVGGKS  191 (447)
T ss_dssp             CSCEEECCCCSS
T ss_pred             CCEEEECCCCCc
Confidence            999999999987

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.46  E-value=0.00072  Score=65.12  Aligned_cols=97  Identities=21%  Similarity=0.213  Sum_probs=69.3

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h--------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S--------------------  243 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~--------------------  243 (382)
                      ...+|+|||+|+.|+-+|..|.+.|.+|+++++.+.+..                    .                    
T Consensus        10 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   89 (500)
T 2qa1_A           10 SDAAVIVVGAGPAGMMLAGELRLAGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPID   89 (500)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccceecc
Confidence            356899999999999999999999999999997654300                    0                    


Q ss_pred             ---------------H----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          244 ---------------K----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       244 ---------------~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                     +    ..+.+.+.+.|+++++++++.+++.++++  + .+++.+. ++ ..++.+|+||.|.|..
T Consensus        90 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~-~g-~~~~~a~~vVgADG~~  164 (500)
T 2qa1_A           90 FGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAG--V-TVEVRGP-EG-KHTLRAAYLVGCDGGR  164 (500)
T ss_dssp             GGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTE--E-EEEEEET-TE-EEEEEESEEEECCCTT
T ss_pred             cccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCe--E-EEEEEcC-CC-CEEEEeCEEEECCCcc
Confidence                           0    00112233458999999999999987764  2 2444441 11 3468999999999987


Q ss_pred             C
Q 016820          305 P  305 (382)
Q Consensus       305 p  305 (382)
                      .
T Consensus       165 S  165 (500)
T 2qa1_A          165 S  165 (500)
T ss_dssp             C
T ss_pred             h
Confidence            5

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=97.46  E-value=9.5e-05  Score=75.44  Aligned_cols=44  Identities=16%  Similarity=0.053  Sum_probs=35.8

Q ss_pred             cCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820          330 HTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       330 ~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~~~  373 (382)
                      ....++||.+|+.... .+...+.|+.+|..+|..|.+.+.+...
T Consensus       790 ~~~~grL~FAGE~Ts~~~~gtveGAi~SG~RAA~~Il~~l~~~~~  834 (852)
T 2xag_A          790 PQPIPRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQFLGAMY  834 (852)
T ss_dssp             CCCCCCEEECSGGGCTTSTTSHHHHHHHHHHHHHHHHHHHHCCGG
T ss_pred             cCCCCcEEEEehhHhCCCCcCHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            3456899999998753 4678899999999999999999976543

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.45  E-value=0.00073  Score=65.04  Aligned_cols=97  Identities=16%  Similarity=0.178  Sum_probs=69.2

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------h--------------------
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------S--------------------  243 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------~--------------------  243 (382)
                      ...+|+|||+|+.|+-+|..|.+.|.+|+++++.+....                    .                    
T Consensus        11 ~~~dVlIVGaGpaGl~~A~~La~~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~   90 (499)
T 2qa2_A           11 SDASVIVVGAGPAGLMLAGELRLGGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGRPVD   90 (499)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecceecc
Confidence            345799999999999999999999999999998654300                    0                    


Q ss_pred             ---------------H----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          244 ---------------K----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       244 ---------------~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                     +    ..+.+.+.+.|+++++++++.+++.++++  + .+++.+. ++ ..++.+|+||.|.|..
T Consensus        91 ~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~--v-~v~~~~~-~g-~~~~~a~~vVgADG~~  165 (499)
T 2qa2_A           91 FGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDH--V-VVEVEGP-DG-PRSLTTRYVVGCDGGR  165 (499)
T ss_dssp             GGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSC--E-EEEEECS-SC-EEEEEEEEEEECCCTT
T ss_pred             cccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE--E-EEEEEcC-CC-cEEEEeCEEEEccCcc
Confidence                           0    00112233458999999999999887765  2 2444431 12 3478999999999987


Q ss_pred             C
Q 016820          305 P  305 (382)
Q Consensus       305 p  305 (382)
                      .
T Consensus       166 S  166 (499)
T 2qa2_A          166 S  166 (499)
T ss_dssp             C
T ss_pred             c
Confidence            5

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.43  E-value=0.00043  Score=63.48  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus         5 ~dvvIIG~G~~Gl~~A~~La~~G~~V~vlE~~~   37 (369)
T 3dme_A            5 IDCIVIGAGVVGLAIARALAAGGHEVLVAEAAE   37 (369)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            479999999999999999999999999999875

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.42  E-value=0.00021  Score=68.79  Aligned_cols=97  Identities=21%  Similarity=0.321  Sum_probs=69.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---------------hHHHH---HHhccCCCcEEEcCceeEEE
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---------------SKIMQ---NRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---------------~~~~~---~~~l~~~gv~~~~~~~v~~i  267 (382)
                      .+|+|||+|+.|+.+|..|.+. .+|+++++.+.+..               ...+.   .+.+ +.+++++.++.+.++
T Consensus       109 ~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~~i  186 (493)
T 1y56_A          109 VDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSALGV  186 (493)
T ss_dssp             ESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEECCC
T ss_pred             CCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEEEE
Confidence            5799999999999999999999 99999998765410               11111   1223 679999999999888


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                      ..++..     +.+.....++...+.+|.++++||..|....
T Consensus       187 ~~~~~~-----~~~~~~~~~~~~~~~~d~lvlAtGa~~~~~~  223 (493)
T 1y56_A          187 FDKGEY-----FLVPVVRGDKLIEILAKRVVLATGAIDSTML  223 (493)
T ss_dssp             EECSSS-----EEEEEEETTEEEEEEESCEEECCCEEECCCC
T ss_pred             EcCCcE-----EEEEEecCCeEEEEECCEEEECCCCCccCCC
Confidence            876642     2222211233347899999999999876543

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.41  E-value=0.00065  Score=63.33  Aligned_cols=35  Identities=34%  Similarity=0.606  Sum_probs=32.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ..+|+|||+|+.|+.+|..|.+.|.+|+++++.+.
T Consensus        26 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   60 (398)
T 2xdo_A           26 DKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDND   60 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            46899999999999999999999999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.36  E-value=0.00041  Score=67.96  Aligned_cols=94  Identities=11%  Similarity=0.070  Sum_probs=67.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc------------------------------------c-------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR------------------------------------A-------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~------------------------------------~-------  242 (382)
                      ..|+|||+|+.|+-+|..|.+.|.+|+++++.+...                                    .       
T Consensus        50 ~DVvIVGaG~aGL~~A~~La~~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~~~~  129 (570)
T 3fmw_A           50 TDVVVVGGGPVGLMLAGELRAGGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIFTQG  129 (570)
T ss_dssp             -CEEEECCSHHHHHHHHHHHHTTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBCTTC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCccccc
Confidence            479999999999999999999999999999765320                                    0       


Q ss_pred             ----------------h----HHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCce-EEEecCeEEEee
Q 016820          243 ----------------S----KIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQV-SDLKVSGLFFAI  301 (382)
Q Consensus       243 ----------------~----~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~-~~~~~D~vi~~~  301 (382)
                                      .    ...+.+.+++.|++++.++++++++.++++  + .+++..   .++ ..+.+|+||.|.
T Consensus       130 ~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~--v-~v~~~~---~~G~~~~~a~~vV~AD  203 (570)
T 3fmw_A          130 LDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEA--V-EVTVAG---PSGPYPVRARYGVGCD  203 (570)
T ss_dssp             CBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSC--E-EEEEEE---TTEEEEEEESEEEECS
T ss_pred             ccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCe--E-EEEEEe---CCCcEEEEeCEEEEcC
Confidence                            0    011112233458999999999999988765  1 234432   233 679999999999


Q ss_pred             CCCC
Q 016820          302 GHEP  305 (382)
Q Consensus       302 G~~p  305 (382)
                      |...
T Consensus       204 G~~S  207 (570)
T 3fmw_A          204 GGRS  207 (570)
T ss_dssp             CSSC
T ss_pred             CCCc
Confidence            9865

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.32  E-value=0.00085  Score=65.21  Aligned_cols=99  Identities=19%  Similarity=0.243  Sum_probs=68.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  241 (382)
                      .+|+|||+|+.|+-+|..|.+.|.+|+++++.+...                                            
T Consensus         6 ~dVlIVGaG~aGl~~A~~La~~G~~v~viEr~~~~~~~~~~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~~~~~~   85 (535)
T 3ihg_A            6 VDVLVVGAGLGGLSTAMFLARQGVRVLVVERRPGLSPYPRAAGQNPRTMELLRIGGVADEVVRADDIRGTQGDFVIRLAE   85 (535)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSSSSCCCCCCSCCBCHHHHHHHHHTTCHHHHHHSCCSSCTTSCCEEEEES
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCccceECHHHHHHHHHcCCHHHHHhhCCCcccccceeeeEEe
Confidence            579999999999999999999999999998875320                                            


Q ss_pred             ------------c-------------------hH----HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC
Q 016820          242 ------------A-------------------SK----IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT  286 (382)
Q Consensus       242 ------------~-------------------~~----~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~  286 (382)
                                  .                   .+    ..+.+.+++.|+++++++++++++.+++++ +..+.+.....
T Consensus        86 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~-~~~v~v~~~~~  164 (535)
T 3ihg_A           86 SVRGEILRTVSESFDDMVAATEPCTPAGWAMLSQDKLEPILLAQARKHGGAIRFGTRLLSFRQHDDDA-GAGVTARLAGP  164 (535)
T ss_dssp             SSSSCEEEEEESCHHHHHHTTGGGCSCCCBCCCHHHHHHHHHHHHHHTTCEEESSCEEEEEEEECGGG-CSEEEEEEEET
T ss_pred             ccCCceeeeccccccccccccccCCCCcccccCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCc-cccEEEEEEcC
Confidence                        0                   00    001122334689999999999999877621 11133332111


Q ss_pred             CceEEEecCeEEEeeCCCC
Q 016820          287 GQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p  305 (382)
                      +...++.+|+||.|.|...
T Consensus       165 ~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          165 DGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             TEEEEEEEEEEEECCCTTC
T ss_pred             CCeEEEEeCEEEECCCCcc
Confidence            2246799999999999875

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.32  E-value=0.0009  Score=65.79  Aligned_cols=92  Identities=18%  Similarity=0.330  Sum_probs=65.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-Cc------------------------c------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FR------------------------A------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-~~------------------------~------------------  242 (382)
                      -.|+|||+|..|+++|..+++.|.+|+++++... +.                        .                  
T Consensus        29 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~Cnps~ggia~~~lv~ei~algg~~~~~~d~~gi~f~~l~~  108 (651)
T 3ces_A           29 FDVIIIGGGHAGTEAAMAAARMGQQTLLLTHNIDTLGQMSCNPAIGGIGKGHLVKEVDALGGLMAKAIDQAGIQFRILNA  108 (651)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSSSEEESTTHHHHHHHHHHTTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECChHHHHHHHHHHHhCCCCEEEEeecccccccccccccccchhhHHHHHHHHHhccHHHHHhhhcccchhhhhc
Confidence            4799999999999999999999999999997631 10                        0                  


Q ss_pred             -----------------hHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          243 -----------------SKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       243 -----------------~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                       ....+.+.+++ .|++++ +..+.++..+++.  +.+|.+.+   +  ..+.+|.||+|+|..
T Consensus       109 ~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~-~~~V~~L~~e~g~--V~GV~t~d---G--~~I~Ad~VVLATGt~  180 (651)
T 3ces_A          109 SKGPAVRATRAQADRVLYRQAVRTALENQPNLMIF-QQAVEDLIVENDR--VVGAVTQM---G--LKFRAKAVVLTVGTF  180 (651)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEESSSB--EEEEEETT---S--EEEEEEEEEECCSTT
T ss_pred             ccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEE-EEEEEEEEecCCE--EEEEEECC---C--CEEECCEEEEcCCCC
Confidence                             00111233445 699985 6789999876542  44454432   3  579999999999985


Q ss_pred             C
Q 016820          305 P  305 (382)
Q Consensus       305 p  305 (382)
                      +
T Consensus       181 s  181 (651)
T 3ces_A          181 L  181 (651)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.32  E-value=0.00065  Score=62.79  Aligned_cols=33  Identities=24%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++..
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~   50 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGT   50 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCC
Confidence            579999999999999999999999999998753

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=97.30  E-value=0.0018  Score=63.49  Aligned_cols=99  Identities=17%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------------------------------------------  242 (382)
                      ..+|+|||+|..|+..|..+.+.|.+|+++++.+.+..                                          
T Consensus       126 ~~~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~~~a~gg~~~~~~~~~~~~g~~ds~~~~~~~~~~~g~~~~~  205 (572)
T 1d4d_A          126 TTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNIND  205 (572)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTGGGCCSCEECCSSSTTGGGTCCCCTHHHHHHHHHHTTTCSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcchhhhCCeeEccCCHHHHHhCCCCCHHHHHHHHHHhcCCCCC
Confidence            45899999999999999999999999999987653310                                          


Q ss_pred             ------------------------------------------------hHHH---HHHhccCCCcEEEcCceeEEEEecC
Q 016820          243 ------------------------------------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEG  271 (382)
Q Consensus       243 ------------------------------------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~  271 (382)
                                                                      ...+   +.+.+++.||++++++++.++..++
T Consensus       206 ~~~v~~~~~~~~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~~~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~  285 (572)
T 1d4d_A          206 PELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVRILEDA  285 (572)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEEC-
T ss_pred             HHHHHHHHHccHHHHHHHHhcCCccccccccCCCcCCeeEecCCCCCCHHHHHHHHHHHHHHcCCeEEecCEEEEEEECC
Confidence                                                            0000   0122345689999999999998665


Q ss_pred             CceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       272 ~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +| .+.+|.+.+ .+++...+.+|.||+|+|..+
T Consensus       286 ~g-~v~GV~~~~-~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          286 SG-KVTGVLVKG-EYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             -C-CEEEEEEEE-TTTEEEEEECSEEEECCCCCT
T ss_pred             CC-eEEEEEEEe-CCCcEEEEEcCEEEEeCCCCc
Confidence            23 255677764 224445789999999999765

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.28  E-value=0.00085  Score=65.73  Aligned_cols=92  Identities=16%  Similarity=0.270  Sum_probs=65.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-Cc------------------------c------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FR------------------------A------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-~~------------------------~------------------  242 (382)
                      -.|+|||+|..|+++|..+++.|.+|.++++... +.                        .                  
T Consensus        28 yDVIVIGgG~AGl~AAlalAr~G~kVlLIEk~~~~iG~~~Cnps~GGia~g~lv~eldalgg~~~~~~d~~gi~f~~l~~  107 (637)
T 2zxi_A           28 FDVVVIGGGHAGIEAALAAARMGAKTAMFVLNADTIGQMSCNPAIGGIAKGIVVREIDALGGEMGKAIDQTGIQFKMLNT  107 (637)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCCSCSEEECTTHHHHHHHHHHHTCSHHHHHHHHEEEEEEEST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEEecccccCCcCccccccccchHHHHHHHHHhhhHHHHHhhhcccceeeccc
Confidence            4799999999999999999999999999998631 10                        0                  


Q ss_pred             -----------------hHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          243 -----------------SKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       243 -----------------~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                       ....+.+.+++ .|++++ +..+.++..+++.  +.+|.+.+   +  ..+.+|.||+|+|..
T Consensus       108 ~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~-~~~Vt~L~~e~g~--V~GV~t~d---G--~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          108 RKGKAVQSPRAQADKKRYREYMKKVCENQENLYIK-QEEVVDIIVKNNQ--VVGVRTNL---G--VEYKTKAVVVTTGTF  179 (637)
T ss_dssp             TSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ESCEEEEEESSSB--EEEEEETT---S--CEEECSEEEECCTTC
T ss_pred             ccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEE-EeEEEEEEecCCE--EEEEEECC---C--cEEEeCEEEEccCCC
Confidence                             00011223444 689985 6789998876542  44454432   3  579999999999975


Q ss_pred             C
Q 016820          305 P  305 (382)
Q Consensus       305 p  305 (382)
                      +
T Consensus       180 s  180 (637)
T 2zxi_A          180 L  180 (637)
T ss_dssp             B
T ss_pred             c
Confidence            3

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=97.28  E-value=0.00021  Score=69.72  Aligned_cols=34  Identities=29%  Similarity=0.291  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+|++|||+|++|+.+|.+|++.|.+|+|+|+.
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g   39 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERG   39 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            4589999999999999999999999999999964

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.26  E-value=0.00077  Score=62.04  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|+|||+|.+|+.+|..|.+.|.+|+++++..
T Consensus         4 dvvIIG~Gi~Gl~~A~~La~~G~~V~vle~~~   35 (372)
T 2uzz_A            4 DLIIIGSGSVGAAAGYYATRAGLNVLMTDAHM   35 (372)
T ss_dssp             EEEESCTTHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEecCC
Confidence            69999999999999999999999999998754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.25  E-value=0.00056  Score=65.80  Aligned_cols=34  Identities=35%  Similarity=0.491  Sum_probs=29.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      |+|+|||+|..|+-+|.+|++.|.+|+++++++.
T Consensus         2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~   35 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDK   35 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC--
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCCC
Confidence            6899999999999999999999999999886543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.25  E-value=0.00099  Score=62.34  Aligned_cols=35  Identities=17%  Similarity=0.235  Sum_probs=32.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCE-EEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~-v~~~~~~~~~  240 (382)
                      .+|+|||+|+.|+.+|..|.+.|.+ |+++++.+.+
T Consensus         5 ~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            5 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEI   40 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCc
Confidence            5799999999999999999999999 9999987653

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.22  E-value=0.0019  Score=62.37  Aligned_cols=50  Identities=14%  Similarity=0.241  Sum_probs=38.0

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecC-eEEEeeCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVS-GLFFAIGHEP  305 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D-~vi~~~G~~p  305 (382)
                      +.|++++++++++++..+++|+ +.+|.+..  .++...+.+| .||+|+|.-.
T Consensus       214 ~~Gv~i~~~t~v~~L~~~~~g~-v~GV~~~~--~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          214 KLGVRAEYDMRVQTLVTDDTGR-VVGIVAKQ--YGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HTTCEEECSEEEEEEEECTTCC-EEEEEEEE--TTEEEEEEEEEEEEECCCCCT
T ss_pred             HcCCEEEecCEeEEEEECCCCc-EEEEEEEE--CCcEEEEEeCCeEEEeCCChh
Confidence            4689999999999999874443 66677765  2444578996 9999998765

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.21  E-value=0.001  Score=61.33  Aligned_cols=33  Identities=21%  Similarity=0.403  Sum_probs=30.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|+|||+|..|+-+|..|+ .|.+|+++++.+
T Consensus         9 ~~dv~IIGaGi~Gls~A~~La-~G~~V~vlE~~~   41 (381)
T 3nyc_A            9 EADYLVIGAGIAGASTGYWLS-AHGRVVVLEREA   41 (381)
T ss_dssp             ECSEEEECCSHHHHHHHHHHT-TTSCEEEECSSS
T ss_pred             cCCEEEECCcHHHHHHHHHHh-CCCCEEEEECCC
Confidence            578999999999999999999 599999999874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.20  E-value=0.0015  Score=65.30  Aligned_cols=34  Identities=24%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+-+|..|++.|.+|+++++.+
T Consensus       272 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  305 (676)
T 3ps9_A          272 KREAAIIGGGIASALLSLALLRRGWQVTLYCADE  305 (676)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            3689999999999999999999999999999853

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.17  E-value=0.0022  Score=59.24  Aligned_cols=33  Identities=36%  Similarity=0.504  Sum_probs=30.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|.+|+.+|..|.+.|.+|+++++..
T Consensus         6 ~dVvIIGgGi~Gl~~A~~La~~G~~V~lle~~~   38 (382)
T 1y56_B            6 SEIVVIGGGIVGVTIAHELAKRGEEVTVIEKRF   38 (382)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            579999999999999999999999999998763

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.16  E-value=0.0025  Score=61.94  Aligned_cols=93  Identities=17%  Similarity=0.180  Sum_probs=63.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------c--hH----------------HH
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------A--SK----------------IM  246 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------~--~~----------------~~  246 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++.+.+.                     .  ..                .+
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~~~~i   96 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPEI   96 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCCHHHH
Confidence            479999999999999999999999999999865320                     0  00                11


Q ss_pred             ---HHHhccCC--CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          247 ---QNRALTNP--KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       247 ---~~~~l~~~--gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                         .+...++.  +++++.++++.+++.++++. .  ..+..   .++.++.+|.||+|+|..
T Consensus        97 ~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~-~--w~V~~---~~G~~~~ad~vV~AtG~~  153 (542)
T 1w4x_A           97 LRYINFVADKFDLRSGITFHTTVTAAAFDEATN-T--WTVDT---NHGDRIRARYLIMASGQL  153 (542)
T ss_dssp             HHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-E--EEEEE---TTCCEEEEEEEEECCCSC
T ss_pred             HHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCC-e--EEEEE---CCCCEEEeCEEEECcCCC
Confidence               11222333  35788899999998765421 1  33433   223468999999999963

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.07  E-value=0.0021  Score=63.12  Aligned_cols=91  Identities=21%  Similarity=0.365  Sum_probs=63.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC-Cc------c------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-FR------A------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~-~~------~------------------------------------  242 (382)
                      ..|+|||+|..|+++|..+++.|.+|+++++... +.      .                                    
T Consensus        22 yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~~~c~ps~gGia~~~lv~el~al~g~~~~~~d~~gi~f~~l~~  101 (641)
T 3cp8_A           22 YDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVARMSCNPAIGGVAKGQITREIDALGGEMGKAIDATGIQFRMLNR  101 (641)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCSEEECHHHHHHHHHHHHHTCSHHHHHHHHEEEEEEECS
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCCCccccchhhhhHHHHHHHHHhcccHHHHHHHhcCCchhhccc
Confidence            5799999999999999999999999999998631 10      0                                    


Q ss_pred             -----------------hHHHHHHhccC-CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          243 -----------------SKIMQNRALTN-PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       243 -----------------~~~~~~~~l~~-~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                                       ....+.+.+++ .|++++ ...+.++..+++.  +.+|.+.+   +  ..+.+|.||+|+|..
T Consensus       102 ~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d~g~--V~GV~t~~---G--~~i~Ad~VVLATG~~  173 (641)
T 3cp8_A          102 SKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLL-QDTVIGVSANSGK--FSSVTVRS---G--RAIQAKAAILACGTF  173 (641)
T ss_dssp             SSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEE-ECCEEEEEEETTE--EEEEEETT---S--CEEEEEEEEECCTTC
T ss_pred             ccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEE-eeEEEEEEecCCE--EEEEEECC---C--cEEEeCEEEECcCCC
Confidence                             00011223444 589986 4588888776542  33344322   3  579999999999965

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.07  E-value=0.0031  Score=61.58  Aligned_cols=51  Identities=14%  Similarity=0.002  Sum_probs=39.9

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +.|++++.++++.++..++++  +.+|++.+..++++..+.+|.||.|+|.-.
T Consensus       182 ~~G~~i~~~~~V~~l~~~~g~--v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s  232 (561)
T 3da1_A          182 ARGAVALNYMKVESFIYDQGK--VVGVVAKDRLTDTTHTIYAKKVVNAAGPWV  232 (561)
T ss_dssp             HTTCEEEESEEEEEEEEETTE--EEEEEEEETTTCCEEEEEEEEEEECCGGGH
T ss_pred             HcCCEEEcCCEEEEEEEcCCe--EEEEEEEEcCCCceEEEECCEEEECCCcch
Confidence            468899999999999887653  566777765456567899999999999753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.07  E-value=0.0016  Score=60.67  Aligned_cols=33  Identities=27%  Similarity=0.514  Sum_probs=30.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhh-cC-CEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTK-YG-SKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~-~g-~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+.+|..|.+ .| .+|+++++.+
T Consensus        22 ~dVvIIG~G~~Gl~~A~~La~~~G~~~V~vlE~~~   56 (405)
T 2gag_B           22 YDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKGW   56 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence            479999999999999999999 89 9999998764

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=97.03  E-value=0.00035  Score=69.59  Aligned_cols=32  Identities=19%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC--------CCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE--------LKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g--------~~v~lie~   89 (382)
                      .++|+|||||++|+++|+.|.+.|        ++|+|+|+
T Consensus        56 ~~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~   95 (721)
T 3ayj_A           56 NYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEA   95 (721)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEec
Confidence            478999999999999999999998        99999994

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=96.99  E-value=0.0028  Score=63.53  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=31.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+
T Consensus       264 ~~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~  297 (689)
T 3pvc_A          264 CDDIAIIGGGIVSALTALALQRRGAVVTLYCADA  297 (689)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            4689999999999999999999999999999864

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=96.97  E-value=0.00044  Score=67.60  Aligned_cols=34  Identities=24%  Similarity=0.268  Sum_probs=31.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC-CCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE-LKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~~   90 (382)
                      ..+|+||||||.||+.+|.+|++.+ .+|+|||+.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG   39 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAG   39 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence            4599999999999999999999997 799999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=96.97  E-value=0.00035  Score=67.95  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+|+||||+|.+|+.+|.+|++ |.+|+|+|+.
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG   57 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERG   57 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSS
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecC
Confidence            45899999999999999999999 9999999963

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=96.94  E-value=0.0039  Score=61.18  Aligned_cols=100  Identities=15%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc------CCEEEEEEeCCCCcc-------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY------GSKVYIIHRRDSFRA-------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~------g~~v~~~~~~~~~~~-------------------------------------  242 (382)
                      .+|+|||+|+.|+.+|..|.+.      |.+|+++++.+.+..                                     
T Consensus        36 ~DVvIVGaG~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~~~~g~~l~~~~l~~ll~~~~~~g~~~~~~~~~~~~~  115 (584)
T 2gmh_A           36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  115 (584)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCccccccccCHHHHHHHHHHHHhcCCceeeeechhhee
Confidence            4799999999999999999998      999999987643210                                     


Q ss_pred             -------------hH--------------H---HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec---cCCc-
Q 016820          243 -------------SK--------------I---MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL---VTGQ-  288 (382)
Q Consensus       243 -------------~~--------------~---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~---~~~~-  288 (382)
                                   ..              .   .+.+.+++.|++++.++.+.++..+++|. +.+|.+.+.   .+++ 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~-V~gV~~~~~g~~~~G~~  194 (584)
T 2gmh_A          116 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGS-VKGIATNDVGIQKDGAP  194 (584)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSS-EEEEEECCEEECTTSCE
T ss_pred             eeccCCCccccccCccccccCCCEEEeHHHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCC-EEEEEeCCccccCCCCc
Confidence                         00              0   01122334689999999999998876543 334554321   1121 


Q ss_pred             ------eEEEecCeEEEeeCCCCC
Q 016820          289 ------VSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       289 ------~~~~~~D~vi~~~G~~p~  306 (382)
                            +.++.+|+||.|.|....
T Consensus       195 ~~~~~~g~~i~Ad~VV~AdG~~S~  218 (584)
T 2gmh_A          195 KTTFERGLELHAKVTIFAEGCHGH  218 (584)
T ss_dssp             EEEEECCCEEECSEEEECCCTTCH
T ss_pred             ccccCCceEEECCEEEEeeCCCch
Confidence                  257999999999998753

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=96.94  E-value=0.00047  Score=66.87  Aligned_cols=33  Identities=21%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH-cCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~   89 (382)
                      ..+|+||||||++|+.+|.+|++ .+++|+|+|+
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEa   49 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEA   49 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECS
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcC
Confidence            36999999999999999999998 5799999996

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=96.93  E-value=0.0042  Score=57.36  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++..
T Consensus         4 ~dvvIIGaG~~Gl~~A~~La~~G~~V~vie~~~   36 (389)
T 2gf3_A            4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFD   36 (389)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            469999999999999999999999999998754

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=96.79  E-value=0.00092  Score=65.38  Aligned_cols=34  Identities=18%  Similarity=0.197  Sum_probs=31.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~   90 (382)
                      ..+|+||||||.||+.+|.+|++. +.+|+|||+.
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG   52 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESG   52 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSS
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecC
Confidence            469999999999999999999986 8999999964

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=96.78  E-value=0.009  Score=57.42  Aligned_cols=33  Identities=33%  Similarity=0.402  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..|+|||+|.+|+.+|..|++.|.+|+++++.+
T Consensus         4 ~DVvIIGgGi~G~~~A~~La~~G~~V~llE~~~   36 (501)
T 2qcu_A            4 KDLIVIGGGINGAGIAADAAGRGLSVLMLEAQD   36 (501)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCEEEEECCC
Confidence            479999999999999999999999999998754

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=96.78  E-value=0.0064  Score=56.40  Aligned_cols=33  Identities=24%  Similarity=0.496  Sum_probs=30.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..|+|||+|..|+.+|..|.+.|.+|+++++.+
T Consensus         5 ~DVvIIGaG~~Gl~~A~~La~~G~~V~vlE~~~   37 (397)
T 2oln_A            5 YDVVVVGGGPVGLATAWQVAERGHRVLVLERHT   37 (397)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            369999999999999999999999999998754

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=96.66  E-value=0.0015  Score=63.07  Aligned_cols=34  Identities=24%  Similarity=0.237  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+|++|||+|++|+.+|..|.+.|.+|+|+|+.
T Consensus        10 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~   43 (507)
T 1coy_A           10 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMG   43 (507)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECC
Confidence            4689999999999999999999999999999964

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=96.65  E-value=0.0014  Score=63.16  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=31.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+|++|||+|++|+.+|..|.+.|.+|+|+|+.
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~   37 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMG   37 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCC
Confidence            3589999999999999999999999999999964

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=96.65  E-value=0.012  Score=57.16  Aligned_cols=35  Identities=20%  Similarity=0.287  Sum_probs=31.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .+|+|||+|++|+-+|..|.+.|.+|+++++.+..
T Consensus        27 ~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           27 TDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            47999999999999999999999999999987644

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=96.63  E-value=0.014  Score=57.43  Aligned_cols=50  Identities=18%  Similarity=0.302  Sum_probs=36.2

Q ss_pred             CCC-cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          253 NPK-IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       253 ~~g-v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.| |+++.++.+.++..+++  .+.++.+.+..+++...+.++.||+|+|..
T Consensus       146 ~~gnv~i~~~~~v~~l~~~~g--~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          146 QFPQIQRFDEHFVLDILVDDG--HVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             TCTTEEEEETEEEEEEEEETT--EEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             hCCCcEEEeCCEEEEEEEeCC--EEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            456 99999999999987653  255565554334544579999999999873

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=96.60  E-value=0.0042  Score=57.99  Aligned_cols=32  Identities=22%  Similarity=0.405  Sum_probs=29.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRR  237 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~  237 (382)
                      .+|+|||+|.+|+.+|..|.+.  |.+|+++++.
T Consensus        37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~   70 (405)
T 3c4n_A           37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEG   70 (405)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC
Confidence            4799999999999999999999  9999999865

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=96.59  E-value=0.0062  Score=60.45  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=30.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhh-cCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTK-YGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~-~g~~v~~~~~~~~  239 (382)
                      .+|+|||+|+.|+-+|..|.+ .|.+|+++++.+.
T Consensus        33 ~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~   67 (639)
T 2dkh_A           33 VDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEG   67 (639)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            479999999999999999999 8999999987654

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=96.55  E-value=0.016  Score=56.89  Aligned_cols=49  Identities=18%  Similarity=0.189  Sum_probs=36.2

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                      .||+++.++.+.++..+++|+ +.++.+.+..+++...+.++.||+|+|.
T Consensus       156 ~gv~i~~~~~v~~L~~~~~g~-v~Gv~~~~~~~g~~~~i~A~~VVlAtGg  204 (588)
T 2wdq_A          156 NHTTIFSEWYALDLVKNQDGA-VVGCTALCIETGEVVYFKARATVLATGG  204 (588)
T ss_dssp             TTCEEEETEEEEEEEECTTSC-EEEEEEEETTTCCEEEEEEEEEEECCCC
T ss_pred             CCCEEEeCcEEEEEEECCCCE-EEEEEEEEcCCCeEEEEEcCEEEECCCC
Confidence            578999999999998753332 5667765433454457899999999986

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=96.52  E-value=0.0027  Score=62.37  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=31.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH-cCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~   90 (382)
                      ..+|++|||+|++|+.+|..|++ .|.+|+|+|+.
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g   57 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKG   57 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecC
Confidence            46899999999999999999999 79999999963

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=96.52  E-value=0.0079  Score=57.35  Aligned_cols=31  Identities=29%  Similarity=0.489  Sum_probs=28.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      .|+|||+|..|+..|..+.+.|.+|+++++.
T Consensus         1 DVvVIG~G~AGl~aA~~la~~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRRAGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4899999999999999999999999999876

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=96.47  E-value=0.0011  Score=64.70  Aligned_cols=33  Identities=15%  Similarity=0.314  Sum_probs=30.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHH-cCCCeEEEecc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGW   90 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~   90 (382)
                      .+|++|||||.||+.+|.+|++ .+.+|+|||+.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG   35 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAG   35 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSS
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecC
Confidence            4899999999999999999999 58999999963

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=96.42  E-value=0.013  Score=56.81  Aligned_cols=52  Identities=17%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             CCcEEEcCceeEEEEecCCc-----eeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDK-----KVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g-----~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      .||+++.++.+.++..++++     ..+.++.+.+..+++...+.++.||+|+|...
T Consensus       152 ~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~~  208 (540)
T 1chu_A          152 PNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGAS  208 (540)
T ss_dssp             TTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCG
T ss_pred             CCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCcc
Confidence            58999999999999873322     13566777653335445789999999999765

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=96.42  E-value=0.0022  Score=62.43  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie~~   90 (382)
                      ..+|++|||+|.+|+.+|.+|++. |.+|+|+|+.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g   46 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAG   46 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecC
Confidence            468999999999999999999998 8999999974

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=96.38  E-value=0.0021  Score=54.41  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=31.3

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ....+.|+|||||..|...+..|.+.|.+|+|++
T Consensus        28 ~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVva   61 (223)
T 3dfz_A           28 DLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVA   61 (223)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEEC
T ss_pred             EcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence            3356899999999999999999999999999999

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=96.37  E-value=0.014  Score=56.12  Aligned_cols=56  Identities=18%  Similarity=0.190  Sum_probs=40.7

Q ss_pred             CCCcEEEcCceeEEEEecCCce-----eeeeEEEEeccCCceEEEecCeEEEeeCCCCChh
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKK-----VLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK  308 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~-----~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~  308 (382)
                      +.+..++++++|.+++..+.+.     ....|+..+..+++...+.++.+++|+|..|..+
T Consensus       157 ~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~ar~vVlatG~~P~iP  217 (501)
T 4b63_A          157 QFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRTRKVVIAIGGTAKMP  217 (501)
T ss_dssp             TTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEEEEEEECCCCEECCC
T ss_pred             HcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEeCEEEECcCCCCCCC
Confidence            4455678899999998755321     1345666665666677899999999999887655

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=96.31  E-value=0.034  Score=54.79  Aligned_cols=50  Identities=12%  Similarity=0.121  Sum_probs=36.7

Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      +.||+++.++.+.++..+++  .+.++.+.+..+++...+.++.||+|+|.-
T Consensus       167 ~~gv~i~~~~~v~~Li~~~g--~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  216 (621)
T 2h88_A          167 RYDTSYFVEYFALDLLMENG--ECRGVIALCIEDGTIHRFRAKNTVIATGGY  216 (621)
T ss_dssp             TSCCEEEETEEEEEEEEETT--EEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             hCCCEEEEceEEEEEEEECC--EEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence            45789999999999887543  256677655334555678999999999864

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.30  E-value=0.0053  Score=47.92  Aligned_cols=32  Identities=9%  Similarity=0.208  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .+.+|+|+|.|..|..+|..|.+.|++|+++|
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid   37 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIE   37 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEE
Confidence            45789999999999999999999999999999

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=96.25  E-value=0.029  Score=54.75  Aligned_cols=33  Identities=30%  Similarity=0.326  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..|+|||+|.+|+-+|..|++.|.+|+++++.+
T Consensus        33 ~DVvVIGgGi~G~~~A~~La~rG~~V~LlE~~~   65 (571)
T 2rgh_A           33 LDLLIIGGGITGAGVAVQAAASGIKTGLIEMQD   65 (571)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            579999999999999999999999999998654

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=96.18  E-value=0.02  Score=55.49  Aligned_cols=34  Identities=21%  Similarity=0.468  Sum_probs=30.9

Q ss_pred             CCcEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+.+|..|.+   .|.+|+++++..
T Consensus         5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   41 (538)
T 2aqj_A            5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAA   41 (538)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCC
Confidence            3589999999999999999999   899999999754

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=96.03  E-value=0.0051  Score=58.31  Aligned_cols=81  Identities=15%  Similarity=0.032  Sum_probs=54.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|.|||.|.+|+++|..|+++|++|++.|...                       .  ....    ..+.+++.|++
T Consensus         8 ~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~-----------------------~--~~~~----~~~~L~~~gi~   58 (451)
T 3lk7_A            8 ENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP-----------------------F--DENP----TAQSLLEEGIK   58 (451)
T ss_dssp             TTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC-----------------------G--GGCH----HHHHHHHTTCE
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc-----------------------c--cCCh----HHHHHHhCCCE
Confidence            34789999999999999999999999999999310                       0  0011    22345667998


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCC
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQ  178 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~  178 (382)
                      ++.+.-    +++.   +  ++   .+|.||+++|..+..|.
T Consensus        59 ~~~g~~----~~~~---~--~~---~~d~vv~spgi~~~~p~   88 (451)
T 3lk7_A           59 VVCGSH----PLEL---L--DE---DFCYMIKNPGIPYNNPM   88 (451)
T ss_dssp             EEESCC----CGGG---G--GS---CEEEEEECTTSCTTSHH
T ss_pred             EEECCC----hHHh---h--cC---CCCEEEECCcCCCCChh
Confidence            876531    1100   0  00   17899999999876664

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.01  E-value=0.0076  Score=46.95  Aligned_cols=31  Identities=19%  Similarity=0.141  Sum_probs=29.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .++++|+|+|..|..+|..|.+.|++|+++|
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id   36 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVD   36 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEE
Confidence            3589999999999999999999999999999

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=95.99  E-value=0.021  Score=58.46  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=30.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~  238 (382)
                      .+|+|||+|.+|+.+|..|.+.|. +|+++++..
T Consensus         5 ~dVvIIGgGi~Gls~A~~La~~G~~~V~vlE~~~   38 (830)
T 1pj5_A            5 PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP   38 (830)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCCcEEEEeCCC
Confidence            579999999999999999999998 899998765

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=95.94  E-value=0.0057  Score=52.90  Aligned_cols=34  Identities=29%  Similarity=0.497  Sum_probs=31.5

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .|+|||+|++|+.+|..|.+.|.+|+++++.+.+
T Consensus         4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGS   37 (336)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            5999999999999999999999999999987654

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=95.94  E-value=0.0083  Score=58.97  Aligned_cols=42  Identities=19%  Similarity=0.268  Sum_probs=37.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..+|++|||+|..|..+|..|++.|.+|.+||    +....||.+.
T Consensus         7 ~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id----~~~~~gg~~~   48 (650)
T 1vg0_A            7 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVD----SRSYYGGNWA   48 (650)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGC
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhCCCEEEEEc----CCCcccCccc
Confidence            36999999999999999999999999999999    5567777644

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=95.92  E-value=0.02  Score=56.98  Aligned_cols=35  Identities=26%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhh-----cCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTK-----YGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~-----~g~~v~~~~~~~~~  240 (382)
                      ..|+|||+|+.|+-+|..|.+     .|.+|+++++.+..
T Consensus         9 ~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            9 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            369999999999999999999     99999999977543

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=95.81  E-value=0.011  Score=46.81  Aligned_cols=31  Identities=10%  Similarity=0.086  Sum_probs=29.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..+++|+|+|..|..+|..|.+.|++|+++|
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid   33 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVIS   33 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEE
Confidence            4689999999999999999999999999999

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=95.71  E-value=0.011  Score=47.01  Aligned_cols=33  Identities=15%  Similarity=0.201  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ...+|+|+|+|..|..+|..|.+.|++|+++++
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~   50 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDK   50 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            346899999999999999999999999999994

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=95.66  E-value=0.011  Score=45.74  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=28.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|+|+|+|..|..+|..|.+.|++|+++|
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d   34 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID   34 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            579999999999999999999999999999

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=95.60  E-value=0.059  Score=53.46  Aligned_cols=50  Identities=18%  Similarity=0.195  Sum_probs=36.3

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      .|++++.++.+.++..+++  .+.++.+.+..++....+.++.||+|||.-.
T Consensus       171 ~gv~i~~~~~v~~L~~~~g--~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~  220 (660)
T 2bs2_A          171 LGVSIQDRKEAIALIHQDG--KCYGAVVRDLVTGDIIAYVAKGTLIATGGYG  220 (660)
T ss_dssp             HTCEEECSEEEEEEEEETT--EEEEEEEEETTTCCEEEEECSEEEECCCCCG
T ss_pred             CCCEEEECcEEEEEEecCC--EEEEEEEEECCCCcEEEEEcCEEEEccCcch
Confidence            4788899999999876543  2556666543445455789999999998764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.43  E-value=0.017  Score=44.79  Aligned_cols=31  Identities=13%  Similarity=0.119  Sum_probs=29.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+|+|+|+|..|..+|..|.+.|++|+++++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~   37 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDI   37 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            5799999999999999999999999999993

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.39  E-value=0.028  Score=50.68  Aligned_cols=132  Identities=17%  Similarity=0.053  Sum_probs=72.9

Q ss_pred             cccEEEECCcHHHHH-HHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           58 KTKVCIIGSGPAAHT-AAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~-~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .++|.|||.|.+|++ +|..|.++|++|++.|..               .      .      ..    ..+.+++.|++
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~---------------~------~------~~----~~~~L~~~gi~   52 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAK---------------M------Y------PP----MSTQLEALGID   52 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESS---------------C------C------TT----HHHHHHHTTCE
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCC---------------C------C------cH----HHHHHHhCCCE
Confidence            368999999999996 888999999999999931               0      0      01    12334566888


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCC--
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG--  214 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G--  214 (382)
                      ++.+.    +++.    +  ..  -.+|.||+++|..+..|.+.-....-...+...++..... ....+-|.|-|..  
T Consensus        53 v~~g~----~~~~----l--~~--~~~d~vV~Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~-~~~~~~IaVTGTnGK  119 (326)
T 3eag_A           53 VYEGF----DAAQ----L--DE--FKADVYVIGNVAKRGMDVVEAILNLGLPYISGPQWLSENV-LHHHWVLGVAGTHGK  119 (326)
T ss_dssp             EEESC----CGGG----G--GS--CCCSEEEECTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHT-GGGSEEEEEESSSCH
T ss_pred             EECCC----CHHH----c--CC--CCCCEEEECCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHH-hcCCCEEEEECCCCH
Confidence            86542    1110    0  00  1479999999998776643211110001111111111100 1112346666653  


Q ss_pred             -chHHHHHHHHhhcCCEEEE
Q 016820          215 -DSAMEEANFLTKYGSKVYI  233 (382)
Q Consensus       215 -~~a~e~a~~l~~~g~~v~~  233 (382)
                       -+..-++..|.+.|.++.+
T Consensus       120 TTTt~ll~~iL~~~g~~~~~  139 (326)
T 3eag_A          120 TTTASMLAWVLEYAGLAPGF  139 (326)
T ss_dssp             HHHHHHHHHHHHHTTCCCEE
T ss_pred             HHHHHHHHHHHHHcCCCceE
Confidence             2344456667777776643

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=95.30  E-value=0.099  Score=52.87  Aligned_cols=34  Identities=29%  Similarity=0.624  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+..|..|.+.|.+|+++++.+
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~  369 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKD  369 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEeccc
Confidence            5689999999999999999999999999998754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.21  E-value=0.018  Score=42.98  Aligned_cols=32  Identities=13%  Similarity=0.351  Sum_probs=29.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC-CCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE-LKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~   89 (382)
                      .++|+|+|+|..|..++..|.+.| ++|+++++
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r   37 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADH   37 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEES
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeC
Confidence            357999999999999999999999 99999983

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.19  E-value=0.032  Score=50.33  Aligned_cols=79  Identities=19%  Similarity=0.084  Sum_probs=57.2

Q ss_pred             CCcEEEEcCCchHHH-HHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEe
Q 016820          205 DKPLAVIGGGDSAME-EANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKN  283 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~  283 (382)
                      .++|.|||-|.+|+. +|..|.++|.+|+..+.+...+.     .+.|++.|++++.+...     +.            
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~-----~~~L~~~gi~v~~g~~~-----~~------------   61 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPM-----STQLEALGIDVYEGFDA-----AQ------------   61 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTH-----HHHHHHTTCEEEESCCG-----GG------------
T ss_pred             CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHH-----HHHHHhCCCEEECCCCH-----HH------------
Confidence            478999999999997 88999999999999998765322     23355568887654210     00            


Q ss_pred             ccCCceEE-EecCeEEEeeCCCCChhhhc
Q 016820          284 LVTGQVSD-LKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       284 ~~~~~~~~-~~~D~vi~~~G~~p~~~~~~  311 (382)
                            .. ..+|.||.++|..++.+.+.
T Consensus        62 ------l~~~~~d~vV~Spgi~~~~p~~~   84 (326)
T 3eag_A           62 ------LDEFKADVYVIGNVAKRGMDVVE   84 (326)
T ss_dssp             ------GGSCCCSEEEECTTCCTTCHHHH
T ss_pred             ------cCCCCCCEEEECCCcCCCCHHHH
Confidence                  00 24799999999998776554

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=95.01  E-value=0.13  Score=51.01  Aligned_cols=50  Identities=10%  Similarity=0.148  Sum_probs=36.0

Q ss_pred             Cc-EEEcCceeEEEEecCCc-eeeeeEEEEeccCCceEEEecCeEEEeeCCC
Q 016820          255 KI-DVIWNSVVLEAYGEGDK-KVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE  304 (382)
Q Consensus       255 gv-~~~~~~~v~~i~~~~~g-~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~  304 (382)
                      || +++.++.+.++..++++ ..+.++.+.+..+++...+.++.||+|+|..
T Consensus       166 gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          166 GEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             CGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             CCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            88 89999999999876541 1366676654344555578999999999853

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=94.91  E-value=0.035  Score=52.50  Aligned_cols=83  Identities=19%  Similarity=0.141  Sum_probs=59.5

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                      ..+++|.|+|.|.+|+.+|..|.+.|.+|+..+.++.-. . .. .+.|++.|++++.+...     .+           
T Consensus         7 ~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~-~-~~-~~~L~~~gi~~~~g~~~-----~~-----------   67 (451)
T 3lk7_A            7 FENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDE-N-PT-AQSLLEEGIKVVCGSHP-----LE-----------   67 (451)
T ss_dssp             TTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGG-C-HH-HHHHHHTTCEEEESCCC-----GG-----------
T ss_pred             cCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccC-C-hH-HHHHHhCCCEEEECCCh-----HH-----------
Confidence            457899999999999999999999999999998865311 1 11 23466679988765421     00           


Q ss_pred             eccCCceEEEe-cCeEEEeeCCCCChhhhc
Q 016820          283 NLVTGQVSDLK-VSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       283 ~~~~~~~~~~~-~D~vi~~~G~~p~~~~~~  311 (382)
                             ..-. +|.||.++|..++.+.+.
T Consensus        68 -------~~~~~~d~vv~spgi~~~~p~~~   90 (451)
T 3lk7_A           68 -------LLDEDFCYMIKNPGIPYNNPMVK   90 (451)
T ss_dssp             -------GGGSCEEEEEECTTSCTTSHHHH
T ss_pred             -------hhcCCCCEEEECCcCCCCChhHH
Confidence                   0012 789999999988776554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=94.67  E-value=0.036  Score=45.22  Aligned_cols=31  Identities=19%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc-CCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA-ELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~-g~~v~lie   88 (382)
                      ..+|+|+|.|..|..+|..|.+. |++|+++|
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid   70 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIE   70 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEE
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEE
Confidence            46899999999999999999999 99999999

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=94.50  E-value=0.033  Score=49.60  Aligned_cols=31  Identities=26%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||+|.-|...|..|++.|++|+++|+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~   46 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQ   46 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEC
Confidence            5799999999999999999999999999993

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=94.46  E-value=0.036  Score=46.69  Aligned_cols=30  Identities=23%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|+|+|+|..|..+|..|.+.|++|+++|
T Consensus         1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid   30 (218)
T 3l4b_C            1 MKVIIIGGETTAYYLARSMLSRKYGVVIIN   30 (218)
T ss_dssp             CCEEEECCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence            369999999999999999999999999999

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=94.17  E-value=0.043  Score=49.06  Aligned_cols=31  Identities=26%  Similarity=0.402  Sum_probs=29.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..+|.|||+|.-|...|..++..|++|+|+|
T Consensus         6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D   36 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYD   36 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCeEEEECCcHHHHHHHHHHHhCCCeEEEEE
Confidence            4579999999999999999999999999999

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.91  E-value=0.064  Score=50.79  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+|+|+|-.|..+|..|...|++|++||+
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~   34 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDK   34 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEES
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence            46899999999999999999999999999994

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=93.81  E-value=0.14  Score=43.13  Aligned_cols=80  Identities=19%  Similarity=0.264  Sum_probs=54.2

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                      ..+++|+|||+|.+|...+..|.+.|.+|+++.+...    ..+ +.+.++.+++++...                ..  
T Consensus        29 L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~----~~l-~~l~~~~~i~~i~~~----------------~~--   85 (223)
T 3dfz_A           29 LKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVS----AEI-NEWEAKGQLRVKRKK----------------VG--   85 (223)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCC----HHH-HHHHHTTSCEEECSC----------------CC--
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCC----HHH-HHHHHcCCcEEEECC----------------CC--
Confidence            3589999999999999999999999999999986422    222 344445567664221                00  


Q ss_pred             eccCCceEEEecCeEEEeeCCCCChhhh
Q 016820          283 NLVTGQVSDLKVSGLFFAIGHEPATKFV  310 (382)
Q Consensus       283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~  310 (382)
                      .   +  .--.+|+||.||+-......+
T Consensus        86 ~---~--dL~~adLVIaAT~d~~~N~~I  108 (223)
T 3dfz_A           86 E---E--DLLNVFFIVVATNDQAVNKFV  108 (223)
T ss_dssp             G---G--GSSSCSEEEECCCCTHHHHHH
T ss_pred             H---h--HhCCCCEEEECCCCHHHHHHH
Confidence            0   1  112489999999877544433

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=93.75  E-value=0.047  Score=51.27  Aligned_cols=34  Identities=21%  Similarity=0.430  Sum_probs=31.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|+|||+|+.|+.+|..|.+.|.+|+++++.+
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3689999999999999999999999999999876

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=93.74  E-value=0.055  Score=50.45  Aligned_cols=35  Identities=17%  Similarity=0.429  Sum_probs=31.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ++|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            1 MRAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMI   35 (421)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence            36999999999999999999999999999987543

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=93.74  E-value=0.04  Score=48.08  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|+|||||-.|...+..|.+.|++|+||++
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap   44 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcC
Confidence            457899999999999999999999999999994

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=93.73  E-value=0.073  Score=52.84  Aligned_cols=35  Identities=26%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHc------CCCeEEEecc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARA------ELKPILFEGW   90 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~------g~~v~lie~~   90 (382)
                      ...+||||||||.||+++|+.|++.      |.+|+||||.
T Consensus        20 ~~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~   60 (662)
T 3gyx_A           20 EHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKA   60 (662)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSS
T ss_pred             eEEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEec
Confidence            3568999999999999999999998      9999999974

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.69  E-value=0.049  Score=51.27  Aligned_cols=32  Identities=19%  Similarity=0.306  Sum_probs=29.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+|||.|.+|+++|..|+++|++|+++|.
T Consensus         5 ~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~   36 (439)
T 2x5o_A            5 GKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (439)
T ss_dssp             TCCEEEECCHHHHHHHHHHHHTTTCCCEEEES
T ss_pred             CCEEEEEeecHHHHHHHHHHHhCCCEEEEEEC
Confidence            36899999999999999999999999999994

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=93.61  E-value=0.058  Score=49.75  Aligned_cols=33  Identities=21%  Similarity=0.158  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ...+|+|||+|.+|+.+|..|..+|.+|+++|.
T Consensus       189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~  221 (405)
T 4dio_A          189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDV  221 (405)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcC
Confidence            357899999999999999999999999999994

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=93.55  E-value=0.06  Score=50.17  Aligned_cols=34  Identities=29%  Similarity=0.327  Sum_probs=31.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ++|+|||+|..|+-+|..|.+.|.+|+++++++.
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~   34 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPI   34 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCC
Confidence            3699999999999999999999999999998754

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=93.52  E-value=0.064  Score=48.40  Aligned_cols=31  Identities=35%  Similarity=0.545  Sum_probs=29.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      +++|+|||+|..|..+|..|++.|+ +|+|+|
T Consensus         9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D   40 (331)
T 1pzg_A            9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYD   40 (331)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            4689999999999999999999998 999999

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=93.25  E-value=0.067  Score=48.94  Aligned_cols=33  Identities=21%  Similarity=0.191  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ...+|+|||+|.+|+.+|..|..+|.+|+++|+
T Consensus       183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~  215 (381)
T 3p2y_A          183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDV  215 (381)
T ss_dssp             CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeC
Confidence            357899999999999999999999999999994

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=93.17  E-value=0.072  Score=47.80  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|+|||+|..|..+|..|++.|++|++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~   32 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVS   32 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEe
Confidence            579999999999999999999999999998

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=93.13  E-value=0.071  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=31.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~  240 (382)
                      ++|+|||+|+.|+.+|..|.+.  |.+|+++++.+.+
T Consensus         1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3699999999999999999999  9999999987654

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=93.11  E-value=0.085  Score=50.38  Aligned_cols=37  Identities=19%  Similarity=0.372  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ..++|+|||+|.+|+.+|..|.+.|.+|+++++.+.+
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCC
Confidence            3578999999999999999999999999999876543

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=93.09  E-value=0.11  Score=47.18  Aligned_cols=33  Identities=30%  Similarity=0.465  Sum_probs=30.6

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      ..+|+|||+|.+|+-+|..|.+.|.+|+++++.
T Consensus         6 ~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~   38 (363)
T 1c0p_A            6 QKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (363)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCEEEEEecc
Confidence            457999999999999999999999999999975

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=93.08  E-value=0.12  Score=40.76  Aligned_cols=37  Identities=19%  Similarity=0.326  Sum_probs=32.9

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ..+++++|+|+|..|..++..|.+.|.+|+++.+.+.
T Consensus        17 ~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~   53 (155)
T 2g1u_A           17 QKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEY   53 (155)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            3468999999999999999999999999999988653

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=92.96  E-value=0.085  Score=48.17  Aligned_cols=32  Identities=22%  Similarity=0.448  Sum_probs=29.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ++|+|+|||..|..+++.++++|++|+++|..
T Consensus         2 K~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~   33 (363)
T 4ffl_A            2 KTICLVGGKLQGFEAAYLSKKAGMKVVLVDKN   33 (363)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            57999999999999999999999999999953

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=92.93  E-value=0.097  Score=47.27  Aligned_cols=31  Identities=23%  Similarity=0.315  Sum_probs=29.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .++|.|||+|..|..+|..|++.|++|++++
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~   33 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLALAGEAINVLA   33 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEEE
Confidence            3589999999999999999999999999998

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=92.92  E-value=0.083  Score=50.08  Aligned_cols=35  Identities=23%  Similarity=0.500  Sum_probs=31.6

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCC--EEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGS--KVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~--~v~~~~~~~~~  240 (382)
                      ++|+|||+|.+|+-.|..|.+.|.  +|++++.++.+
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            579999999999999999999999  99999876544

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=92.86  E-value=0.095  Score=46.10  Aligned_cols=31  Identities=19%  Similarity=0.265  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||+|..|...|..|++.|++|+++|+
T Consensus         5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~   35 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDI   35 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeC
Confidence            5799999999999999999999999999993

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=92.81  E-value=0.083  Score=47.19  Aligned_cols=30  Identities=13%  Similarity=0.204  Sum_probs=28.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||+|..|..+|..|++.|++|++++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~   32 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLL   32 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEE
Confidence            579999999999999999999999999998

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=92.71  E-value=0.09  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.354  Sum_probs=30.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ...+|+|||+|..|..+|..|++.|. +++|+|.
T Consensus        30 ~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~   63 (249)
T 1jw9_B           30 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDF   63 (249)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECC
T ss_pred             hCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcC
Confidence            35789999999999999999999997 8999994

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=92.71  E-value=0.098  Score=48.72  Aligned_cols=36  Identities=28%  Similarity=0.560  Sum_probs=32.7

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|..|+-.|..|.+.| .+|+++++.+.+
T Consensus         6 ~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            6 DSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHV   42 (424)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCS
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCC
Confidence            568999999999999999999999 899999987654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=92.70  E-value=0.1  Score=46.10  Aligned_cols=31  Identities=26%  Similarity=0.270  Sum_probs=29.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|||+|..|..+|..|.+.|++|+++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r   33 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGR   33 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEES
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence            5899999999999999999999999999995

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=92.68  E-value=0.098  Score=47.80  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      .+.+|||+|||.+|+.+|..|...|. +|+++|+
T Consensus       187 ~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~  220 (398)
T 2a9f_A          187 DEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDK  220 (398)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEET
T ss_pred             CccEEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            45789999999999999999999999 9999994

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=92.62  E-value=0.13  Score=47.29  Aligned_cols=37  Identities=22%  Similarity=0.451  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC-CCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR-DSF  240 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~-~~~  240 (382)
                      ...+|+|||+|.+|+-+|..|.+.|.+|++++++ +.+
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~v   80 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRV   80 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCC
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEecccccc
Confidence            4678999999999999999999999999999988 544

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=92.62  E-value=0.098  Score=46.81  Aligned_cols=31  Identities=32%  Similarity=0.476  Sum_probs=29.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      .++|+|||+|..|..+|..|++.|+  +|+++|
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d   39 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLED   39 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            3589999999999999999999998  999999

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=92.57  E-value=0.087  Score=49.19  Aligned_cols=34  Identities=32%  Similarity=0.500  Sum_probs=31.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|||+|..|+-.|..|.+.|.+|+++++++.+
T Consensus         3 dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~   36 (431)
T 3k7m_X            3 DAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERL   36 (431)
T ss_dssp             EEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            6999999999999999999999999999987654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=92.56  E-value=0.091  Score=50.27  Aligned_cols=35  Identities=23%  Similarity=0.384  Sum_probs=31.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~  240 (382)
                      -.|+|||+|.+|+-+|..|.+. |.+|++++.++.+
T Consensus        11 ~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~   46 (513)
T 4gde_A           11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETP   46 (513)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCC
Confidence            4699999999999999999874 9999999988766

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=92.52  E-value=0.13  Score=48.98  Aligned_cols=37  Identities=30%  Similarity=0.411  Sum_probs=33.4

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ...+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus        10 ~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~   46 (489)
T 2jae_A           10 GSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRP   46 (489)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCC
Confidence            3568999999999999999999999999999887654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=92.49  E-value=0.12  Score=48.47  Aligned_cols=32  Identities=13%  Similarity=0.147  Sum_probs=30.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ...+|.|||.|+.|+.+|..|++.|++|+.+|
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A~~G~~V~g~D   51 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFALLGHRVVGYD   51 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHhCCCcEEEEE
Confidence            45689999999999999999999999999999

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=92.45  E-value=0.098  Score=49.59  Aligned_cols=39  Identities=23%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .....+|+|||+|.+|+-+|..|.+.|.+|+++++.+.+
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   51 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCC
Confidence            344678999999999999999999999999999988754

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=92.41  E-value=0.14  Score=44.66  Aligned_cols=36  Identities=25%  Similarity=0.439  Sum_probs=33.0

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .+++|+|||+|.+|...+..|.+.|++|+++.....
T Consensus        12 ~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~~   47 (274)
T 1kyq_A           12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (274)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            578999999999999999999999999999987643

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=92.39  E-value=0.11  Score=47.93  Aligned_cols=33  Identities=27%  Similarity=0.374  Sum_probs=30.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ++|+|||+|..|++.|..+++.|.+|+++++++
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~   34 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRP   34 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccC
Confidence            469999999999999999999999999998765

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=92.37  E-value=0.11  Score=48.18  Aligned_cols=32  Identities=28%  Similarity=0.227  Sum_probs=29.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+|+|||+|.+|+.+|..++.+|.+|+++|.
T Consensus       172 g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~  203 (401)
T 1x13_A          172 PAKVMVIGAGVAGLAAIGAANSLGAIVRAFDT  203 (401)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            57899999999999999999999999999994

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=92.28  E-value=0.12  Score=48.76  Aligned_cols=37  Identities=27%  Similarity=0.409  Sum_probs=34.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      ..+|+|||+|..|+-+|..|.+.|++|+++++++.+.
T Consensus        11 ~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~G   47 (453)
T 2bcg_G           11 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYG   47 (453)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            3579999999999999999999999999999998773

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=92.25  E-value=0.11  Score=49.41  Aligned_cols=32  Identities=19%  Similarity=0.220  Sum_probs=30.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|.|||.|..|+.+|..|++.|++|+++|.
T Consensus         8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~   39 (478)
T 2y0c_A            8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDV   39 (478)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CceEEEECcCHHHHHHHHHHHhCCCEEEEEEC
Confidence            46899999999999999999999999999985

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=92.08  E-value=0.14  Score=45.70  Aligned_cols=32  Identities=34%  Similarity=0.525  Sum_probs=29.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ...+|.|||+|..|..+|..|+..|+ +++|+|
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D   39 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVD   39 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            34689999999999999999999999 999999

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=92.05  E-value=0.12  Score=45.84  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||+|..|..+|..|.+.|++|+++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r   34 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQ   34 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEEC
Confidence            4799999999999999999999999999983

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=92.01  E-value=0.12  Score=48.64  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||.|..|+.+|..|++.|++|+++|.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~   33 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDT   33 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEEC
Confidence            5799999999999999999999999999995

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=91.99  E-value=0.12  Score=49.68  Aligned_cols=36  Identities=33%  Similarity=0.542  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|..|+.+|..|.+.|.+|++++.++.+
T Consensus         4 ~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            4 KCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   39 (520)
T ss_dssp             BCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCC
Confidence            357999999999999999999999999999876544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=91.95  E-value=0.16  Score=47.34  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=30.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+|+|||.|..|..+|..|.+.|++|++||.
T Consensus         4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~   35 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDH   35 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEEC
Confidence            46899999999999999999999999999995

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=91.94  E-value=0.13  Score=47.36  Aligned_cols=33  Identities=21%  Similarity=0.156  Sum_probs=30.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ...+|+|+|+|.+|+.++..++.+|.+|+++|+
T Consensus       171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~  203 (384)
T 1l7d_A          171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDV  203 (384)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            457899999999999999999999999999983

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=91.93  E-value=0.15  Score=44.62  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +|.|||+|..|..+|..|.+.|++|+++++
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r   31 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEc
Confidence            699999999999999999999999999984

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=91.92  E-value=0.14  Score=45.80  Aligned_cols=31  Identities=32%  Similarity=0.474  Sum_probs=29.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      +.+|+|||+|..|..+|..|+..+.  +++|+|
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~D   39 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLID   39 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            4689999999999999999999987  899999

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=91.90  E-value=0.16  Score=46.74  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=33.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      .+|+|||+|.+|+.+|..|.+.|.+|+++++++.+.
T Consensus         4 ~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~G   39 (384)
T 2bi7_A            4 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIG   39 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSS
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcC
Confidence            479999999999999999999999999999987764

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=91.89  E-value=0.13  Score=45.98  Aligned_cols=32  Identities=19%  Similarity=0.385  Sum_probs=28.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      .+.+|+|||+|..|..+|..|...+.  ++.|+|
T Consensus         5 ~~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~D   38 (317)
T 3d0o_A            5 KGNKVVLIGNGAVGSSYAFSLVNQSIVDELVIID   38 (317)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCSCSEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            44689999999999999999998884  799998

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=91.86  E-value=0.14  Score=45.60  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=27.8

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           60 KVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      +|+|||+|..|..+|..|+..|+  +|+++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D   32 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVD   32 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            69999999999999999999998  999999

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=91.75  E-value=0.16  Score=46.33  Aligned_cols=33  Identities=27%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|.|||+|.-|..+|..|++.|++|+++++
T Consensus        28 ~~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r   60 (356)
T 3k96_A           28 FKHPIAILGAGSWGTALALVLARKGQKVRLWSY   60 (356)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHTTTCCEEEECS
T ss_pred             cCCeEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence            346899999999999999999999999999983

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=91.74  E-value=0.21  Score=39.20  Aligned_cols=34  Identities=21%  Similarity=0.198  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++++|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~   36 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCC
Confidence            4689999999999999999999999999998863

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=91.73  E-value=0.17  Score=42.93  Aligned_cols=33  Identities=15%  Similarity=0.209  Sum_probs=29.7

Q ss_pred             ccccEEEECC-cHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGS-GPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGa-G~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|+|.|| |..|..++..|.+.|++|+++.+
T Consensus        20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R   53 (236)
T 3e8x_A           20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVR   53 (236)
T ss_dssp             -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEEC
Confidence            4578999997 99999999999999999999984

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=91.72  E-value=0.078  Score=50.02  Aligned_cols=35  Identities=20%  Similarity=0.370  Sum_probs=31.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC------CEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG------SKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g------~~v~~~~~~~~~  240 (382)
                      ++|+|||+|.+|+-+|..|.+.|      .+|+++++.+.+
T Consensus         6 ~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            6 KHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCC
Confidence            57999999999999999999999      899999987544

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.71  E-value=0.2  Score=38.76  Aligned_cols=35  Identities=11%  Similarity=0.019  Sum_probs=32.0

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..++++|+|.|..|..++..|.+.|.+|+++++.+
T Consensus         6 ~~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            6 ICNHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            35789999999999999999999999999999864

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=91.69  E-value=0.16  Score=46.42  Aligned_cols=32  Identities=28%  Similarity=0.317  Sum_probs=29.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+|+|+|+|.+|..++..|+.+|.+|+++++
T Consensus       167 ~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr  198 (361)
T 1pjc_A          167 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDI  198 (361)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            37899999999999999999999999999983

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.62  E-value=0.13  Score=46.65  Aligned_cols=32  Identities=19%  Similarity=0.191  Sum_probs=29.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC------CEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG------SKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g------~~v~~~~~~~  238 (382)
                      +|+|||+|.+|+-+|..|++.|      .+|+++++..
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCC
Confidence            6999999999999999999997      8999999874

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.55  E-value=0.13  Score=49.07  Aligned_cols=78  Identities=15%  Similarity=0.144  Sum_probs=56.1

Q ss_pred             CCCcEEEEcCCchHHH-HHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEE
Q 016820          204 RDKPLAVIGGGDSAME-EANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVK  282 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~  282 (382)
                      ..++|.|||-|-+|+. +|..|.+.|.+|+..+.....     . .+.|++.|++++.+...     .            
T Consensus        21 ~~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~-----~-~~~l~~~gi~~~~g~~~-----~------------   77 (494)
T 4hv4_A           21 RVRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNS-----V-TQHLTALGAQIYFHHRP-----E------------   77 (494)
T ss_dssp             -CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCH-----H-HHHHHHTTCEEESSCCG-----G------------
T ss_pred             cCCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCH-----H-HHHHHHCCCEEECCCCH-----H------------
Confidence            3589999999999996 899999999999998876431     1 13466679988765210     0            


Q ss_pred             eccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          283 NLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       283 ~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                             ....+|.||.++|..++.+.+.
T Consensus        78 -------~~~~~d~vV~Spgi~~~~p~~~   99 (494)
T 4hv4_A           78 -------NVLDASVVVVSTAISADNPEIV   99 (494)
T ss_dssp             -------GGTTCSEEEECTTSCTTCHHHH
T ss_pred             -------HcCCCCEEEECCCCCCCCHHHH
Confidence                   0114799999999988766543

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=91.52  E-value=0.16  Score=45.63  Aligned_cols=30  Identities=30%  Similarity=0.585  Sum_probs=28.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ++|+|||+|..|..+|..|+..|+ +|+|+|
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~D   45 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFD   45 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEE
Confidence            589999999999999999999998 999999

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=91.52  E-value=0.16  Score=46.30  Aligned_cols=33  Identities=15%  Similarity=0.207  Sum_probs=30.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      .+.+|||+|+|.+|..+|..|...|. +|+++|+
T Consensus       191 ~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr  224 (388)
T 1vl6_A          191 EEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDR  224 (388)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEET
T ss_pred             CCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEEC
Confidence            45789999999999999999999998 7999994

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=91.41  E-value=0.17  Score=46.27  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=29.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ....|+|+|+|..|..+|..|+..|++|++++
T Consensus       165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d  196 (369)
T 2eez_A          165 APASVVILGGGTVGTNAAKIALGMGAQVTILD  196 (369)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEE
Confidence            34789999999999999999999999999999

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=91.35  E-value=0.16  Score=46.06  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=29.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||+|..|..+|..|++.|++|+++++
T Consensus         5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r   35 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDI   35 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeC
Confidence            5899999999999999999999999999983

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=91.33  E-value=0.16  Score=45.40  Aligned_cols=31  Identities=32%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILF   87 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~li   87 (382)
                      ..++|.|||+|..|..+|..|++.|++|+++
T Consensus        18 ~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~   48 (318)
T 3hwr_A           18 QGMKVAIMGAGAVGCYYGGMLARAGHEVILI   48 (318)
T ss_dssp             --CEEEEESCSHHHHHHHHHHHHTTCEEEEE
T ss_pred             cCCcEEEECcCHHHHHHHHHHHHCCCeEEEE
Confidence            3568999999999999999999999999988

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=91.32  E-value=0.22  Score=43.48  Aligned_cols=33  Identities=15%  Similarity=0.030  Sum_probs=30.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      .++|+|.|+|..|..++..|.+.|++|+++.+.
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~   35 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRLTAQGHEVTGLRRS   35 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEEECT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            357999999999999999999999999999853

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.31  E-value=0.22  Score=46.58  Aligned_cols=35  Identities=20%  Similarity=0.326  Sum_probs=31.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~  239 (382)
                      ..+|+|||+|..|+-+|..|++.|. +|+++++.+.
T Consensus         6 ~~dVvIIGgG~aGlsaA~~La~~G~~~V~vlE~~~~   41 (438)
T 3dje_A            6 SSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPYPV   41 (438)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence            3579999999999999999999999 9999998764

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=91.30  E-value=0.19  Score=41.99  Aligned_cols=33  Identities=12%  Similarity=0.145  Sum_probs=29.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|.|||+|..|..+|..|.+.|++|+++++
T Consensus        18 ~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~   50 (209)
T 2raf_A           18 QGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGS   50 (209)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHTTCEEEEECT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            346899999999999999999999999999985

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=91.30  E-value=0.18  Score=48.08  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|..|+-+|..|.+.|.+|+++++.+.+
T Consensus        13 ~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   48 (504)
T 1sez_A           13 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   48 (504)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCC
Confidence            468999999999999999999999999999988765

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=91.29  E-value=0.15  Score=45.73  Aligned_cols=36  Identities=25%  Similarity=0.323  Sum_probs=31.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhh--cCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~--~g~~v~~~~~~~~~  240 (382)
                      ...|+|||+|+.|+..|.+|.+  .|.+|+++++.+.+
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            4579999999999999999974  59999999987654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=91.28  E-value=0.14  Score=49.21  Aligned_cols=36  Identities=25%  Similarity=0.500  Sum_probs=32.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~  240 (382)
                      ..+|+|||+|..|+-+|..|.+.| .+|++++.++++
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCC
Confidence            357999999999999999999999 999999877654

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=91.23  E-value=0.2  Score=38.24  Aligned_cols=34  Identities=18%  Similarity=0.233  Sum_probs=30.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..+++|+|+|..|..++..|.+.|.+|+++.+.+
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~   37 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   37 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            3579999999999999999999999999998753

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=91.16  E-value=0.18  Score=45.19  Aligned_cols=31  Identities=19%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ..+|+|||+|..|.++|..|+..|+  +++++|
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D   37 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVID   37 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEe
Confidence            4689999999999999999999987  899999

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=91.02  E-value=0.26  Score=41.31  Aligned_cols=32  Identities=28%  Similarity=0.286  Sum_probs=29.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|.|||+|..|...|..|.+.|++|+++++
T Consensus        28 ~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r   59 (215)
T 2vns_A           28 APKVGILGSGDFARSLATRLVGSGFKVVVGSR   59 (215)
T ss_dssp             -CCEEEECCSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEEccCHHHHHHHHHHHHCCCEEEEEeC
Confidence            35799999999999999999999999999983

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.97  E-value=0.2  Score=38.58  Aligned_cols=34  Identities=24%  Similarity=0.282  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++++|+|+|..|..++..|.+.|.+|+++++.+
T Consensus         6 ~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A            6 RYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            4689999999999999999999999999998864

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=90.96  E-value=0.08  Score=41.23  Aligned_cols=31  Identities=23%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .++|+|||+|..|..+|..|.+.|++|++++
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~   51 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAG   51 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGCCTTTCEEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence            5689999999999999999999999988888

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=90.96  E-value=0.15  Score=45.36  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=28.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc-----C-CCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA-----E-LKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~-----g-~~v~lie   88 (382)
                      +++|.|||+|..|..+|..|.+.     | ++|++++
T Consensus         8 ~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~   44 (317)
T 2qyt_A            8 PIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIA   44 (317)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEE
Confidence            35899999999999999999999     9 9999998

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=90.93  E-value=0.21  Score=45.92  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=29.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ....|+|+|+|..|..+|..++.+|.+|++++
T Consensus       167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d  198 (377)
T 2vhw_A          167 EPADVVVIGAGTAGYNAARIANGMGATVTVLD  198 (377)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence            35789999999999999999999999999999

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=90.89  E-value=0.19  Score=44.73  Aligned_cols=30  Identities=23%  Similarity=0.284  Sum_probs=28.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|||+|..|..+|..|. .|.+|+++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r   32 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTR   32 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEEC
Confidence            57999999999999999999 9999999983

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=90.87  E-value=0.19  Score=44.94  Aligned_cols=30  Identities=30%  Similarity=0.571  Sum_probs=28.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ++|+|||+|..|..+|..|++.|+ +|+++|
T Consensus         5 ~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D   35 (317)
T 2ewd_A            5 RKIAVIGSGQIGGNIAYIVGKDNLADVVLFD   35 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            579999999999999999999998 999999

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=90.86  E-value=0.28  Score=46.05  Aligned_cols=52  Identities=15%  Similarity=0.215  Sum_probs=41.3

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  261 (382)
                      .+++|.|||.|.+|+..|..|.+.|.+|+.++.+...+..     ..++ .|+++..+
T Consensus         4 ~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~-----~~l~-~G~~~~~g   55 (439)
T 2x5o_A            4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----DKLP-EAVERHTG   55 (439)
T ss_dssp             TTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTG-----GGSC-TTSCEEES
T ss_pred             CCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchh-----HHhh-CCCEEEEC
Confidence            5689999999999999999999999999999887654322     2355 67777644

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=90.82  E-value=0.18  Score=47.38  Aligned_cols=35  Identities=34%  Similarity=0.556  Sum_probs=31.5

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .+|+|||+|..|+.+|..|.+.|.+|+++++++.+
T Consensus         6 ~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            6 RDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            47999999999999999999999999999877544

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=90.76  E-value=0.22  Score=46.08  Aligned_cols=37  Identities=22%  Similarity=0.296  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhc-CCEEEEEEeCCCCc
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDSFR  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~-g~~v~~~~~~~~~~  241 (382)
                      ..+|+|||+|..|+-+|..|.+. |.+|++++.++.+.
T Consensus         7 ~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~G   44 (399)
T 1v0j_A            7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIG   44 (399)
T ss_dssp             SCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            45799999999999999999998 99999999887663

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=90.75  E-value=0.19  Score=46.44  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=33.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      ..+++|||+|.+|+-+|..|.+.|.+|+++++++.+.
T Consensus        29 ~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~G   65 (397)
T 3hdq_A           29 GFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIG   65 (397)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSS
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCC
Confidence            4579999999999999999999999999999887663

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=90.74  E-value=0.23  Score=44.25  Aligned_cols=32  Identities=13%  Similarity=0.238  Sum_probs=29.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|.|||.|..|..+|..|.+.|++|+++++
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr   52 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNR   52 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeC
Confidence            46899999999999999999999999999994

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=90.74  E-value=0.22  Score=44.60  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=28.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ++|+|||+|..|..+|..|+..|+ +|+|+|
T Consensus         5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~D   35 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   35 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            579999999999999999999998 999999

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=90.73  E-value=0.21  Score=44.46  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=28.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ++|+|||+|..|..+|..|+..|+ +++|+|
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~D   33 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD   33 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEe
Confidence            579999999999999999999996 899999

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=90.65  E-value=0.27  Score=42.75  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++++|||+|.+|-.++..|.+.|.+|+++.+
T Consensus       118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nR  149 (269)
T 3phh_A          118 YQNALILGAGGSAKALACELKKQGLQVSVLNR  149 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            57899999999999999999999999999984

>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}

Probab=90.64  E-value=0.37  Score=46.34  Aligned_cols=81  Identities=9%  Similarity=0.026  Sum_probs=56.6

Q ss_pred             CCCCcEEEEcCCchHHH-HHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          203 FRDKPLAVIGGGDSAME-EANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      +..++|.|||-|-+|+. +|..|.+.|.+|+..+.+...+.     .+.|++.|++++.+...     ..          
T Consensus        17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~-----~~~L~~~gi~~~~G~~~-----~~----------   76 (524)
T 3hn7_A           17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPM-----STQLEQAGVTIEEGYLI-----AH----------   76 (524)
T ss_dssp             --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTH-----HHHHHHTTCEEEESCCG-----GG----------
T ss_pred             ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHH-----HHHHHHCCCEEECCCCH-----HH----------
Confidence            45689999999999997 58888999999999988754321     23455678887654211     00          


Q ss_pred             EeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          282 KNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       282 ~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                              ....+|.||.++|..+..+.+.
T Consensus        77 --------~~~~~d~vV~Spgi~~~~p~l~   98 (524)
T 3hn7_A           77 --------LQPAPDLVVVGNAMKRGMDVIE   98 (524)
T ss_dssp             --------GCSCCSEEEECTTCCTTSHHHH
T ss_pred             --------cCCCCCEEEECCCcCCCCHHHH
Confidence                    0124799999999988776554

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=90.60  E-value=0.23  Score=44.52  Aligned_cols=31  Identities=39%  Similarity=0.570  Sum_probs=29.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..+|+|||+|..|.++|..|+..|+ +++|+|
T Consensus         7 ~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~D   38 (324)
T 3gvi_A            7 RNKIALIGSGMIGGTLAHLAGLKELGDVVLFD   38 (324)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            4689999999999999999999998 999999

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=90.54  E-value=0.22  Score=44.81  Aligned_cols=33  Identities=15%  Similarity=0.255  Sum_probs=30.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+++|.|||+|.-|..+|..|.+.|++|+++++
T Consensus        13 ~~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r   45 (335)
T 1z82_A           13 MEMRFFVLGAGSWGTVFAQMLHENGEEVILWAR   45 (335)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCCcEEEECcCHHHHHHHHHHHhCCCeEEEEeC
Confidence            457899999999999999999999999999983

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=90.52  E-value=0.3  Score=44.80  Aligned_cols=33  Identities=21%  Similarity=0.346  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|.|||+|..|..++..++++|++|+++++
T Consensus        11 ~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~   43 (377)
T 3orq_A           11 FGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDP   43 (377)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            346899999999999999999999999999995

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=90.52  E-value=0.21  Score=36.83  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=30.4

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~  238 (382)
                      .++++|+|+|..|..++..|.+.| .+|+++.|.+
T Consensus         5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A            5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            468999999999999999999999 8899888853

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=90.52  E-value=0.22  Score=45.56  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +++|||+|..|+-+|..|.+.|.+|+++++++.+
T Consensus         3 ~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHI   36 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCC
Confidence            6899999999999999999999999999988765

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=90.50  E-value=0.2  Score=47.34  Aligned_cols=35  Identities=17%  Similarity=0.404  Sum_probs=31.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~  240 (382)
                      .+|+|||+|.+|+-+|..|.+.|  .+|+++++.+.+
T Consensus         5 ~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~   41 (475)
T 3lov_A            5 KRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERL   41 (475)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSS
T ss_pred             ccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            57999999999999999999999  999999986653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=90.41  E-value=0.27  Score=47.70  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~  238 (382)
                      ..+|+|||+|..|+-+|..|.+   .|.+|+++++.+
T Consensus        25 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~   61 (550)
T 2e4g_A           25 IDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPD   61 (550)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCC
Confidence            4689999999999999999999   899999999754

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=90.38  E-value=0.2  Score=46.70  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=29.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|.|||.|..|+.+|..|++ |++|+++|.
T Consensus        35 ~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~   66 (432)
T 3pid_A           35 EFMKITISGTGYVGLSNGVLIAQ-NHEVVALDI   66 (432)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECS
T ss_pred             CCCEEEEECcCHHHHHHHHHHHc-CCeEEEEec
Confidence            44689999999999999999998 999999994

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=90.37  E-value=0.23  Score=43.30  Aligned_cols=31  Identities=16%  Similarity=0.030  Sum_probs=29.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|.|+|..|..++..|.+.|++|+++.+
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r   36 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSR   36 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEES
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEc
Confidence            6799999999999999999999999999984

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=90.35  E-value=0.18  Score=47.29  Aligned_cols=30  Identities=17%  Similarity=0.125  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +|.|||+|..|+.+|..|++.|++|+++|.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~   31 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDV   31 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            699999999999999999999999999984

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=90.27  E-value=0.91  Score=41.28  Aligned_cols=37  Identities=11%  Similarity=0.278  Sum_probs=32.6

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...++++.|||-|.+|..+|..+...|.+|+.+.+..
T Consensus       173 ~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~  209 (365)
T 4hy3_A          173 LIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL  209 (365)
T ss_dssp             CSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS
T ss_pred             ccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC
Confidence            4468999999999999999999999999998887653

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=90.24  E-value=0.28  Score=46.09  Aligned_cols=32  Identities=9%  Similarity=0.207  Sum_probs=30.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++.|||.|.-|+.+|..|++.|++|+++|.
T Consensus         8 ~~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~   39 (446)
T 4a7p_A            8 SVRIAMIGTGYVGLVSGACFSDFGHEVVCVDK   39 (446)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             ceEEEEEcCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            46899999999999999999999999999995

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=90.07  E-value=0.26  Score=43.68  Aligned_cols=32  Identities=28%  Similarity=0.173  Sum_probs=29.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|.|||.|..|...|..|.+.|++|+++++
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr   38 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADL   38 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEEC
Confidence            46899999999999999999999999999983

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=90.05  E-value=0.51  Score=44.82  Aligned_cols=54  Identities=13%  Similarity=0.081  Sum_probs=43.4

Q ss_pred             HHHHHHHHHHHHHcC-cEEEEe-eEEEEEecCCcEEEEECCe-EEEcCEEEEccCCC
Q 016820          120 GDLMDRCRNQSLRFG-TQIFTE-TVSKVDFKSRPFKVFTDSK-SVLADTVIVATGAV  173 (382)
Q Consensus       120 ~~~~~~~~~~~~~~g-i~~~~~-~v~~i~~~~~~~~v~~~~~-~~~~d~lvlA~G~~  173 (382)
                      ..+.+.+.+.+.+.| ++++.+ .|++|+.+++.+.+.+.++ ++.+|+||+|+|..
T Consensus       255 ~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          255 SAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEEEEEEEECCCGG
T ss_pred             HHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEEcCEEEECCCHH
Confidence            456666777777777 888888 6999998877888887654 69999999999963

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=90.03  E-value=0.22  Score=47.17  Aligned_cols=32  Identities=28%  Similarity=0.335  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc-CC-CeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA-EL-KPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~-g~-~v~lie~   89 (382)
                      .++|.|||+|.-|+.+|..|++. |+ +|+++|.
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~   51 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQR   51 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECC
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEEC
Confidence            46899999999999999999999 99 9999995

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=90.02  E-value=0.28  Score=43.88  Aligned_cols=31  Identities=29%  Similarity=0.509  Sum_probs=28.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..+|+|||+|..|.++|..|+..++ +++|+|
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~D   36 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLALIKQLGDVVLFD   36 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCceEEEEe
Confidence            4689999999999999999999888 999999

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=90.00  E-value=0.22  Score=41.89  Aligned_cols=31  Identities=26%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEE-Ee
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPIL-FE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~l-ie   88 (382)
                      .++|.|||+|..|..+|..|.+.|++|++ ++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~   54 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANS   54 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHHHTTCCEEEECT
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            46899999999999999999999999998 66

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.97  E-value=0.24  Score=44.17  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=29.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ..++|.|||.|..|..+|..|.+.|+ +|+++++
T Consensus        23 ~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr   56 (312)
T 3qsg_A           23 NAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDA   56 (312)
T ss_dssp             --CEEEEECCSHHHHHHHHHHHHHSCCEEEEECS
T ss_pred             CCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcC
Confidence            34689999999999999999999999 9999983

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=89.97  E-value=0.28  Score=43.86  Aligned_cols=31  Identities=16%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ..+|+|||+|..|.++|..|+..+.  +++++|
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~D   38 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            4689999999999999999988875  799998

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=89.91  E-value=0.26  Score=43.45  Aligned_cols=32  Identities=28%  Similarity=0.324  Sum_probs=29.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|.|||+|.-|...|..|+ .|++|+++|+
T Consensus        11 ~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~   42 (293)
T 1zej_A           11 HHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDV   42 (293)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHH-TTSEEEEECS
T ss_pred             CCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEEC
Confidence            4588999999999999999999 9999999993

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=89.88  E-value=0.27  Score=43.82  Aligned_cols=29  Identities=28%  Similarity=0.466  Sum_probs=27.2

Q ss_pred             cEEEECCcHHHHHHHHHHHHc--CCCeEEEe
Q 016820           60 KVCIIGSGPAAHTAAIYAARA--ELKPILFE   88 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~--g~~v~lie   88 (382)
                      +|+|||+|..|..+|..|++.  |.+|+++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D   32 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            699999999999999999985  78999999

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=89.88  E-value=0.2  Score=48.02  Aligned_cols=33  Identities=18%  Similarity=0.459  Sum_probs=29.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhh---cCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTK---YGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~---~g~~v~~~~~~~  238 (382)
                      .+|+|||+|..|+-+|..|.+   .|.+|+++++.+
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~   38 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGN   38 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC--
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCC
Confidence            479999999999999999999   999999998764

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=89.88  E-value=0.28  Score=42.72  Aligned_cols=32  Identities=13%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+.++|+|+|.+|..+|..|.+.|.+|+++++
T Consensus       119 ~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R  150 (271)
T 1nyt_A          119 GLRILLIGAGGASRGVLLPLLSLDCAVTITNR  150 (271)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcCCEEEEEEC
Confidence            46899999999999999999999999999983

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=89.83  E-value=0.27  Score=46.45  Aligned_cols=33  Identities=18%  Similarity=0.122  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|||+|..|...+..|.+.|.+|+++++
T Consensus        11 ~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~   43 (457)
T 1pjq_A           11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (457)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcC
Confidence            457899999999999999999999999999996

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=89.81  E-value=0.25  Score=43.61  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=30.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|.|||.|..|...|..|++.|++|+++++
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr   46 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDI   46 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECS
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            46899999999999999999999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	382
d1vdca2	130	c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-e	2e-40
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	2e-37
d1vdca1	192	c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase	1e-30
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	1e-32
d1trba1	190	c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase	7e-30
d1trba2	126	c.3.1.5 (A:119-244) Thioredoxin reductase {Escheri	3e-31
d1fl2a2	126	c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase	6e-29
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	2e-27
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	2e-20
d1fl2a1	184	c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide	6e-20
d1djqa3	233	c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd	3e-19
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	1e-14
d1ps9a3	179	c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu	1e-12
d2gv8a2	107	c.3.1.5 (A:181-287) Flavin-dependent monoxygenase	4e-12
d1gtea3	153	c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenas	2e-10
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	3e-10
d1gtea4	196	c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de	4e-08
d2cula1	230	c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {T	1e-09
d1d7ya1	183	c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredo	9e-08
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	2e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	3e-06
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.003
d1h6va2	122	c.3.1.5 (A:171-292) Mammalian thioredoxin reductas	4e-06
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	4e-06
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	5e-06
d1cjca2	230	c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase	1e-05
d1xhca2	122	c.3.1.5 (A:104-225) NADH oxidase /nitrite reductas	1e-05
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	1e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	2e-05
d1xdia1	233	c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehyd	0.002
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	2e-05
d1q1ra1	185	c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductas	2e-05
d1onfa2	117	c.3.1.5 (A:154-270) Glutathione reductase {Plasmod	3e-05
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	4e-05
d1lqta2	239	c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct	4e-05
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	4e-05
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	5e-05
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	8e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	1e-04
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	1e-04
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	0.002
d1k0ia1	292	c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydr	1e-04
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-04
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	2e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	2e-04
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	2e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-04
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	3e-04
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	3e-04
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	3e-04
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	3e-04
d1ps9a2	162	c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-t	0.001
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	4e-04
d1v59a2	122	c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase	5e-04
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	5e-04
d1xhca1	167	c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite	6e-04
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	6e-04
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	6e-04
d2voua1	265	c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr	9e-04
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	0.001
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.003
d1ojta2	125	c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase	0.003
d1m6ia2	137	c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF	0.003
d1w4xa1	298	c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxy	0.004
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	0.004

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 130

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  137 bits (345), Expect = 2e-40
 Identities = 109/130 (83%), Positives = 118/130 (90%), Gaps = 4/130 (3%)

Query: 176 KLQFPGSD----AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKV 231
           +L F GS      FWNRGISACAVCDGAAPIFR+KPLAVIGGGDSAMEEANFLTKYGSKV
Sbjct: 1   RLSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKV 60

Query: 232 YIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD 291
           YIIHRRD+FRASKIMQ RAL+NPKIDVIWNS V+EAYG+G++ VLGGLKVKN+VTG VSD
Sbjct: 61  YIIHRRDAFRASKIMQQRALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSD 120

Query: 292 LKVSGLFFAI 301
           LKVSGLFFAI
Sbjct: 121 LKVSGLFFAI 130

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  131 bits (331), Expect = 2e-37
 Identities = 72/189 (38%), Positives = 98/189 (51%), Gaps = 21/189 (11%)

Query: 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSV 263
            +  L ++G G +A   A +  +   K  +     +   +   Q    T+ +    +   
Sbjct: 4   HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEG 63

Query: 264 VLEAYGEGDKKVLGGLKVKNLVTGQVSD---------------------LKVSGLFFAIG 302
           +L        +         + T  V+                      + ++    A G
Sbjct: 64  ILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVAKG 123

Query: 303 HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362
           HEPATKF+DG ++L SDGY++TKPGTT TSVPGVFAAGDVQDKKYRQA+TAAGTGCMAAL
Sbjct: 124 HEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAAL 183

Query: 363 EAEHYLQEI 371
           +AEHYLQEI
Sbjct: 184 DAEHYLQEI 192

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 192

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  113 bits (284), Expect = 1e-30
 Identities = 104/193 (53%), Positives = 130/193 (67%), Gaps = 22/193 (11%)

Query: 54  IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF 113
           ++T  T++CI+GSGPAAHTAAIYAARAELKP+LFEGWMANDIAPGGQLTTT+DVENFPGF
Sbjct: 1   LETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF 60

Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV 173
           P+GILG +L D+ R QS RFGT IFTETV+KVDF S+PFK+FTDSK++LAD VI+A GAV
Sbjct: 61  PEGILGVELTDKFRKQSERFGTTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120

Query: 174 AKKLQF--------------------PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG 213
           AK  +                     PG+      G+ A          +R    A   G
Sbjct: 121 AKGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQD--KKYRQAITAAGTG 178

Query: 214 GDSAMEEANFLTK 226
             +A++  ++L +
Sbjct: 179 CMAALDAEHYLQE 191

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score =  119 bits (298), Expect = 1e-32
 Identities = 54/188 (28%), Positives = 80/188 (42%), Gaps = 21/188 (11%)

Query: 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYII------------HRRDSFRASKIMQNRAL 251
           +   L ++G G +    A +  +   +  +I               +++          L
Sbjct: 4   KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPL 63

Query: 252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ----VSDLKVSGLFFAIGHEPAT 307
              ++         E   +   KV    +   L           L ++    A  H P T
Sbjct: 64  LMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASARYHSPNT 123

Query: 308 KFVDGQLDLHSDGYIITKPG----TTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALE 363
              +GQL+L  +GYI  + G     T TS+PGVFAAGDV D  YRQA+T+AGTGCMAAL+
Sbjct: 124 AIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALD 182

Query: 364 AEHYLQEI 371
           AE YL  +
Sbjct: 183 AERYLDGL 190

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 190

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score =  111 bits (278), Expect = 7e-30
 Identities = 63/167 (37%), Positives = 91/167 (54%), Gaps = 12/167 (7%)

Query: 56  TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           T  +K+ I+GSGPA +TAA+YAARA L+P+L  G        GGQLTTT++VEN+PG P 
Sbjct: 3   TKHSKLLILGSGPAGYTAAVYAARANLQPVLITGME-----KGGQLTTTTEVENWPGDPN 57

Query: 116 GILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK 175
            + G  LM+R    + +F T+I  + ++KVD ++RPF++  D+     D +I+ATGA A+
Sbjct: 58  DLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR 117

Query: 176 KLQ-----FPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA 217
                   F G     N  I   +   G A   +     V   GD  
Sbjct: 118 YHSPNTAIFEGQLELENGYIKVQSGIHGNA--TQTSIPGVFAAGDVM 162

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

 Score =  113 bits (283), Expect = 3e-31
 Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 8/130 (6%)

Query: 177 LQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHR 236
           L  P  +AF  RG+SACA  DG    +R++ +AVIGGG++A+EEA +L+   S+V++IHR
Sbjct: 1   LGLPSEEAFKGRGVSACATSDG--FFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHR 58

Query: 237 RDSFRASKIMQNRALTNPKID---VIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VSDL 292
           RD FRA KI+  R +   +     +  N  + E    GD+  + G+++++      +  L
Sbjct: 59  RDGFRAEKILIKRLMDKVENGNIILHTNRTLEEV--TGDQMGVTGVRLRDTQNSDNIESL 116

Query: 293 KVSGLFFAIG 302
            V+GLF AIG
Sbjct: 117 DVAGLFVAIG 126

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 126

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score =  107 bits (267), Expect = 6e-29
 Identities = 40/128 (31%), Positives = 75/128 (58%), Gaps = 4/128 (3%)

Query: 175 KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYII 234
           + +  PG D +  +G++ C  CDG  P+F+ K +AVIGGG+S +E A  L      V ++
Sbjct: 2   RNMNVPGEDQYRTKGVTYCPHCDG--PLFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLL 59

Query: 235 HRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV 294
                 +A +++Q++  +   +D+I N+   E  G+G K V  GL+ ++ V+G + ++++
Sbjct: 60  EFAPEMKADQVLQDKLRSLKNVDIILNAQTTEVKGDGSKVV--GLEYRDRVSGDIHNIEL 117

Query: 295 SGLFFAIG 302
           +G+F  IG
Sbjct: 118 AGIFVQIG 125

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  108 bits (270), Expect = 2e-27
 Identities = 42/346 (12%), Positives = 86/346 (24%), Gaps = 69/346 (19%)

Query: 36  AASFSATTAPKISNAMDE------IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG 89
              F+      +S AM         +   + V I+G+G +  +AA   A+      +   
Sbjct: 22  DFKFAPIRESTVSRAMTSRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVC-- 79

Query: 90  WMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKS 149
            + + +APGG       + +            +                 E         
Sbjct: 80  IIESSVAPGGGSWLGGQLFS---------AMVMRKPAHLFLQELEIPYEDE--------- 121

Query: 150 RPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLA 209
                      V+    +  +  ++K LQ P    F    +              +  +A
Sbjct: 122 -------GDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPP--TEKGEVTVA 172

Query: 210 VIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYG 269
            +    + + +A+          I                                +  G
Sbjct: 173 GVVTNWTLVTQAHGTQCCMDPNVIELAGY---------------------------KNDG 205

Query: 270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTT 329
             D     G+ +             +     I        + G    H++  ++   G  
Sbjct: 206 TRDLSQKHGVILSTTGHDGPFGAFCAKRIVDIDQNQKLGGMKGLDMNHAEHDVVIHSG-A 264

Query: 330 HTSVPGVFAAGDVQ---DKKYRQAVT---AAGTGCMAALEAEHYLQ 369
           +  V  ++ AG      D   R   T    A +G  AA +   +  
Sbjct: 265 YAGVDNMYFAGMEVAELDGLNRMGPTFGAMALSGVHAAEQILKHFA 310

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 85.6 bits (210), Expect = 2e-20
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 29/186 (15%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGG 120
           V I+GSGPA   AAIY+AR  ++  L           GGQ+  T D+EN+   P+   G 
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGE------RFGGQILDTVDIENYISVPK-TEGQ 56

Query: 121 DLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV------- 173
            L    +     +   +     +     +         ++     +   +  V       
Sbjct: 57  KLAGALKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLP 116

Query: 174 -------------AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEE 220
                          ++          +G+ A   C      ++   +A   G  +++  
Sbjct: 117 NTNWLEGAVERNRMGEIIIDAKCETNVKGVFAAGDCTT--VPYKQIIIATGEGAKASLSA 174

Query: 221 ANFLTK 226
            ++L +
Sbjct: 175 FDYLIR 180

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 184

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 84.4 bits (207), Expect = 6e-20
 Identities = 33/177 (18%), Positives = 55/177 (31%), Gaps = 14/177 (7%)

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS------FRASKIMQNRALTNPKIDVIWN 261
           + ++G G +    A +  + G +  ++  R              +        K+     
Sbjct: 4   VLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALK 63

Query: 262 SVVLEAYGE--------GDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQ 313
             V E   +                  +  + T   + LK   +  A G +         
Sbjct: 64  VHVDEYDVDVIDSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKLPNTNWLEG 123

Query: 314 LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
               +    I       T+V GVFAAGD     Y+Q + A G G  A+L A  YL  
Sbjct: 124 AVERNRMGEIIIDAKCETNVKGVFAAGDCTTVPYKQIIIATGEGAKASLSAFDYLIR 180

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

 Score = 83.7 bits (205), Expect = 3e-19
 Identities = 27/186 (14%), Positives = 53/186 (28%), Gaps = 16/186 (8%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
           K  V I+G+GP+   AA     +     L +         GG L   + +     +    
Sbjct: 49  KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI----GGHLNQVAALPGLGEWSYHR 104

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177
              D  +    + L+   +       K        +   D        VI+ATGA    L
Sbjct: 105 ---DYRETQITKLLKKNKESQLALGQKPMTADDVLQYGADK-------VIIATGASECTL 154

Query: 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR 237
                        +             + P  +     +    A  + +   ++ I ++R
Sbjct: 155 WNELKARESEWAENDIKGIYLIG--DAEAPRLIADATFTGHRVAREIEEANPQIAIPYKR 212

Query: 238 DSFRAS 243
           ++    
Sbjct: 213 ETIAWG 218

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.2 bits (175), Expect = 1e-14
 Identities = 47/378 (12%), Positives = 93/378 (24%), Gaps = 78/378 (20%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGF-----P 114
           +V +IG+G +   AA       L   +FE   A     GG+L +     +  G       
Sbjct: 3   RVAVIGAGVSGLAAAYKLKIHGLNVTVFE---AEG-KAGGKLRS----VSQDGLIWDEGA 54

Query: 115 QGILGGD-----------------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD 157
             +   +                        + +           + +D     F     
Sbjct: 55  NTMTESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGS 114

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSA 217
              +L + ++     +++      S + + +      V D     F            S 
Sbjct: 115 KLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSM 174

Query: 218 MEEANFLTKYGSKV---------------------------YIIHRRDSFRASKIMQNR- 249
                 L     +                                +R SF     MQ   
Sbjct: 175 HHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQGPPKTSANKKRQRGSFSFLGGMQTLT 234

Query: 250 ---ALTNPKIDVIWNSVVLEAYGEGDKKVL---GGLKVKNLVTGQVSDLKVSGLFFAIGH 303
                   + ++  NS VLE      +        +   +    Q  +     +      
Sbjct: 235 DAICKDLREDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPL 294

Query: 304 EPATKFVDG------------QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAV 351
                                ++  H+   ++        ++PG+F AG+ +        
Sbjct: 295 CDVKSMKIAKRGNPFLLNFIPEVYGHNYDSVLDAIDKMEKNLPGLFYAGNHRGG--LSVG 352

Query: 352 TAAGTGCMAALEAEHYLQ 369
            A  +GC AA     YL+
Sbjct: 353 KALSSGCNAADLVISYLE 370

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 1e-12
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 26/162 (16%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
           K  + ++G+GPA    AI AA    +  LF+         GGQ      +     F    
Sbjct: 43  KKNLAVVGAGPAGLAFAINAAARGHQVTLFD----AHSEIGGQFNIAKQIPGKEEFY--- 95

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177
              + +   R      G  +        D      +             I+A+G   + L
Sbjct: 96  ---ETLRYYRRMIEVTGVTLKLNHTVTADQLQAFDE------------TILASGIPNRAL 140

Query: 178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAME 219
             P  D+   + +     CD A  +  D   A+  G   A+E
Sbjct: 141 AQPLIDS--GKTVHLIGGCDVAMEL--DARRAIAQGTRLALE 178

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 107

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 11/64 (17%), Positives = 18/64 (28%)

Query: 203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNS 262
           F  + + V+GG  SA +    LT                       +     K D     
Sbjct: 30  FVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGDIQNESLQQVPEITKFDPTTRE 89

Query: 263 VVLE 266
           + L+
Sbjct: 90  IYLK 93

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} Length = 153

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 56.7 bits (136), Expect = 2e-10
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 11/117 (9%)

Query: 196 CDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK-VYIIHRRDSFRASKIMQNRALTNP 254
           C    P  R   + V+G GD+A + A    + G++ V+++ R+       + +   L   
Sbjct: 37  CHSPLPSIRGA-VIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEVELAKE 95

Query: 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVK---------NLVTGQVSDLKVSGLFFAIG 302
           +       +          +++    V+         N    Q+  LK   +  A G
Sbjct: 96  EKCEFLPFLSPRKVIVKGGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 56.7 bits (135), Expect = 3e-10
 Identities = 30/173 (17%), Positives = 57/173 (32%), Gaps = 8/173 (4%)

Query: 204 RDKPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNS 262
               +A++G G +++  A+FL + G S + I  +++        +      P   V +  
Sbjct: 3   YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEI 62

Query: 263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK-----FVDGQLDLH 317
            +++            L    +    + +      F  IG     +          +  +
Sbjct: 63  ELMKDL-GVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFN 121

Query: 318 SDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE 370
                   P T  TS P VFA GD+        V +   G  A+     Y+Q 
Sbjct: 122 RWDLPEVDPETMQTSEPWVFAGGDIVG-MANTTVESVNDGKQASWYIHKYIQA 173

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 50.9 bits (120), Expect = 4e-08
 Identities = 22/188 (11%), Positives = 49/188 (26%), Gaps = 21/188 (11%)

Query: 55  QTLKTKVCIIGSGPAAHTAAIYAARAELKPI-LFEGWMANDIAPGGQLTTTSDVENFPGF 113
           +    K+ ++G+GPA+ + A + AR     I +FE           +      +      
Sbjct: 1   EAYSAKIALLGAGPASISCASFLARLGYSDITIFE-----------KQEYVGGLSTSEIP 49

Query: 114 PQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAV 173
              +    +              I  +++S+ +      K              +  G  
Sbjct: 50  QFRLPYDVVNFEIELMKDLGVKIICGKSLSENEITLNTLKEEGY------KAAFIGIGLP 103

Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG---SK 230
                    +A      +   + +      +     V  GGD        +         
Sbjct: 104 EVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIVGMANTTVESVNDGKQA 163

Query: 231 VYIIHRRD 238
            + IH+  
Sbjct: 164 SWYIHKYI 171

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} Length = 230

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 19/157 (12%), Positives = 36/157 (22%), Gaps = 9/157 (5%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFE------GWMANDIAPGGQLTTTSDVENFPGFP 114
           V I+G+G +    A + A+  ++  L                P     +  +    P   
Sbjct: 5   VLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDE 64

Query: 115 QGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVL-ADTVIVATGAV 173
           +                             +   +R   V T        + V++A G+ 
Sbjct: 65  RVWAFHARAKYLLEGLRPL-HLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSF 123

Query: 174 AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAV 210
                F G       G  + A                
Sbjct: 124 LGARLFLGGV-VEEAGRLSEASYPDLLEDLSRLGFRF 159

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} Length = 183

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

 Score = 49.3 bits (116), Expect = 9e-08
 Identities = 27/171 (15%), Positives = 46/171 (26%), Gaps = 13/171 (7%)

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVL 265
            P+ V+G G +++     L + G +  I    D           +             + 
Sbjct: 4   APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLD 63

Query: 266 EAYGEGDKKVLGGLKVKNLVTGQVSDLKV------SGLFFAIGHEPATKFVDGQ----LD 315
                  + +LG              L          L  A G  P     +        
Sbjct: 64  CKRAPEVEWLLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAPRAVLANDALARAAG 123

Query: 316 LHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH 366
           L  D  I        T+ P V+A GDV   + R  ++           A++
Sbjct: 124 LACDDGIFV-DAYGRTTCPDVYALGDVT--RQRNPLSGRFERIETWSNAQN 171

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (108), Expect = 2e-06
 Identities = 15/55 (27%), Positives = 19/55 (34%), Gaps = 4/55 (7%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQ 115
           V IIG GPA + AAI AA+        E         GG       + +      
Sbjct: 8   VVIIGGGPAGYVAAIKAAQLGFNTACVEK----RGKLGGTCLNVGCIPSKALLNN 58

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 45.7 bits (107), Expect = 3e-06
 Identities = 35/212 (16%), Positives = 61/212 (28%), Gaps = 56/212 (26%)

Query: 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF----------------------- 240
           R+     IGGG +    + +L   G +  I+ R                           
Sbjct: 41  REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELM 100

Query: 241 ---RASKIMQNRALTNPKIDV-----IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSD- 291
                S       +T   + +     ++ +     +G  + +    L ++ ++       
Sbjct: 101 LARTFSGQYWFPDMTEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVI 160

Query: 292 -----------LKVSGLFFAIGHEPATKFVDGQLDLHSD-----------GYIITKPGTT 329
                       K   L  A+G  P T  V  Q                 G ++      
Sbjct: 161 DNHTVEAAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVN-EYL 219

Query: 330 HTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAA 361
            TSVP V+A GD+      +   A  +GC AA
Sbjct: 220 QTSVPNVYAVGDLIG-GPMEMFKARKSGCYAA 250

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 2/71 (2%)

Query: 22 RTFFGIVTTSSAAAAA--SFSATTAPKISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAAR 79
                +T +  A        A    ++   +DE    +     IG G A    + Y   
Sbjct: 4  NARNDHLTINQWATRIDEILEAPDGGEVIYNVDENDPREYDAIFIGGGAAGRFGSAYLRA 63

Query: 80 AELKPILFEGW 90
             + ++ + W
Sbjct: 64 MGGRQLIVDRW 74

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.5 bits (102), Expect = 4e-06
 Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----ASKIMQNRALTNPKIDVIW 260
               V+G    A+E A FL   G  V ++ R    R      +  +    +    I  I 
Sbjct: 21  GKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKIG-EHMEEHGIKFIR 79

Query: 261 NSVV--LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG 302
             V   +E    G    L  +  K+  + +  + + + +  A+G
Sbjct: 80  QFVPTKIEQIEAGTPGRL-KVTAKSTNSEETIEDEFNTVLLAVG 122

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 33/195 (16%), Positives = 60/195 (30%), Gaps = 32/195 (16%)

Query: 55  QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG------------------------- 89
           QT++T + IIG GP  + AAI A +  +  +L EG                         
Sbjct: 2   QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQF 61

Query: 90  --WMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDF 147
                        ++  S   +            ++DR          +   + V     
Sbjct: 62  HQASRFTEPSPLGISVASPRLDIGQSVAWK--DGIVDRLTTGVAALLKKHGVKVVHGWAK 119

Query: 148 KSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPI---FR 204
                +V  D + +  + +++ATG+ + +L        +N       +   A  I    +
Sbjct: 120 VLDGKQVEVDGQRIQCEHLLLATGSSSVELPRRPRTKGFNLECLDLKMNGAAIAIDERCQ 179

Query: 205 DKPLAVIGGGDSAME 219
                V   GD A E
Sbjct: 180 TSMHNVWAIGDVAGE 194

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.6 bits (106), Expect = 5e-06
 Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           MDE    +  V ++G+G      +   +    K +  +    N    G   + T   E +
Sbjct: 3   MDE----EYDVIVLGTGLTECILSGIMSVNGKKVLHMD---RNPYYGGESSSITPLEELY 55

Query: 111 PGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDF 147
             F       + M R R+ ++    +        V  
Sbjct: 56  KRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKM 92

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 23/211 (10%), Positives = 54/211 (25%), Gaps = 32/211 (15%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKP--ILFEGWMANDIAPGGQLTTTSDVENFPGFPQGI 117
           ++C++GSGPA    A +  +   +    ++E        P G +     V       + +
Sbjct: 3   QICVVGSGPAGFYTAQHLLKHHSRAHVDIYE---KQL-VPFGLVRFG--VAPDHPEVKNV 56

Query: 118 LGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL 177
           +         ++   +G       V+  + +     V             ++ GA  K  
Sbjct: 57  INTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVV------------LSYGAEDKSR 104

Query: 178 QFPGSDAFWNRGISACAVC---------DGAAPIFRDKPLAVIGGGDSAMEEANFLTKYG 228
               S  F  +      +            +  + R     +      +           
Sbjct: 105 PIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTG---QILL 161

Query: 229 SKVYIIHRRDSFRASKIMQNRALTNPKIDVI 259
             +   H     R         L +  +  +
Sbjct: 162 QDLKAGHLPSGPRPGSAFIKALLDSRGVWPV 192

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 28/103 (27%), Positives = 38/103 (36%), Gaps = 7/103 (6%)

Query: 174 AKKLQFPGSD-AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
           A++ Q  G +     R I        +  I       +IGGG   +E A  L + G  V 
Sbjct: 2   AREPQIKGKEYLLTLRTIFDADRIKES--IENSGEAIIIGGGFIGLELAGNLAEAGYHVK 59

Query: 233 IIHRRDSFRA----SKIMQNRALTNPKIDVIWNSVVLEAYGEG 271
           +IHR   F         M    L    +    NS +LEA  EG
Sbjct: 60  LIHRGAMFLGLDEELSNMIKDMLEETGVKFFLNSELLEANEEG 102

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 44.2 bits (102), Expect = 1e-05
 Identities = 31/346 (8%), Positives = 77/346 (22%), Gaps = 38/346 (10%)

Query: 60  KVCIIGSGPAAHTAAIYAARA----------------------------ELKPILFEGWM 91
           +V ++G+G +  +AA   + A                            EL     EG  
Sbjct: 2   RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAGINVELGANWVEGVN 61

Query: 92  ANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRP 151
              + P   +  ++            L  ++             Q   E    V+     
Sbjct: 62  GGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDEDYVQKRIELADSVEEMGEK 121

Query: 152 FKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI 211
                 +      +++        +   P +                  P      L   
Sbjct: 122 LSATLHASGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTS--LQNT 179

Query: 212 GGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEG 271
               +  +  + +     +              +  +          +  + V+      
Sbjct: 180 VPLATFSDFGDDVYFVADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS 239

Query: 272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFA---IGHEPATKFVDGQLDLHSDGYIITKP-- 326
              V    +  ++ +     +  S        I  +P          ++    +      
Sbjct: 240 PGGVTVKTEDNSVYSADYVMVSASLGVLQSDLIQFKPKLP-TWKVRAIYQFWPVGVNRYE 298

Query: 327 -GTTHTSVPGVFAAGDVQDKKYRQ-AVTAAGTGCMAALEAEHYLQE 370
                  V  V+  G+   + Y      A  +G  +A    +  Q+
Sbjct: 299 YDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQK 344

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 43.5 bits (101), Expect = 2e-05
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 59 TKVCIIGSGPAAHTAAIYAARAELK 83
          T++ I+G GPA + AA+ AA +  +
Sbjct: 2  TRIVILGGGPAGYEAALVAATSHPE 26

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 303 HEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAAL 362
              +   ++        G  +T    + T   G++AAGD        A  AA  G +A  
Sbjct: 164 PNTSGLGLERVGIQLGRGNYLTVDRVSRTLATGIYAAGDCTG-LLPLASVAAMQGRIAMY 222

Query: 363 EA 364
            A
Sbjct: 223 HA 224

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 43.7 bits (102), Expect = 2e-05
 Identities = 35/215 (16%), Positives = 59/215 (27%), Gaps = 25/215 (11%)

Query: 36  AASFSATTAPKISNAM------DEIQTLKTKVCIIGSGPAAHTAAIYAA-RAELKPILFE 88
           A +F       +S  M      D I   +T V ++G+G A  +AA   +    ++  + E
Sbjct: 5   AFTFDPIKESIVSREMTRRYMTDMITYAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIE 64

Query: 89  GWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFK 148
                 ++PGG        + F           +           G     +    V   
Sbjct: 65  ----QSVSPGG--GAWLGGQLFSAMI-------VRKPAHLFLDEIGVAYDEQDTYVVVKH 111

Query: 149 SRPFKVFTDSKSVLADTVIVATGAVAKKLQFP-----GSDAFWNRGISACAVCDGAAPIF 203
           +  F     SK +    V +     A+ L        G    W              P  
Sbjct: 112 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNV 171

Query: 204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD 238
            +  + V   G      A  + +  S   I H   
Sbjct: 172 MEAKIVVSSCGHDGPFGATGVKRLKSIGMIDHVPG 206

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} Length = 185

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 22/148 (14%), Positives = 40/148 (27%), Gaps = 15/148 (10%)

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS-------------FRASKIMQNRALTNP 254
           + ++G G + +E A  L   G +  I    D+             + A K          
Sbjct: 6   VVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRT 65

Query: 255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQL 314
                  ++ L    +         +V       +   ++          P  +      
Sbjct: 66  PDAYAAQNIQLLGGTQVTAINRDRQQVILSDGRALDYDRLVLATGGRPLIPNCELASA-A 124

Query: 315 DLHSDGYIITKPGTTHTSVPGVFAAGDV 342
            L  D  I+       TS P + A GD 
Sbjct: 125 GLQVDNGIVINE-HMQTSDPLIMAVGDC 151

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 117

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.9 bits (95), Expect = 3e-05
 Identities = 19/92 (20%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 189 GISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQ- 247
           GI      D    I   K + ++G G  A+E  N + + G   YI  R +          
Sbjct: 6   GIENTISSDEFFNIKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESV 65

Query: 248 ----NRALTNPKIDVIWNSVVLEAYGEGDKKV 275
                  +    I+++  + V+E     DK +
Sbjct: 66  INVLENDMKKNNINIVTFADVVEIKKVSDKNL 97

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 42.7 bits (99), Expect = 4e-05
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 46 KISNAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          KI  A+    +  T+V ++G+G A   A++ A +A    IL +
Sbjct: 7  KIQKAIAAGPSETTQVLVVGAGSAGFNASLAAKKAGANVILVD 49

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 42.4 bits (98), Expect = 4e-05
 Identities = 29/208 (13%), Positives = 50/208 (24%), Gaps = 18/208 (8%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPI-------LFEGWMANDIAPGGQLTTTSDVENFPG 112
            + I+GSGP+A  AA    +A            + E        P G + +         
Sbjct: 4   YIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLE---MLP-TPWGLVRS-----GVAP 54

Query: 113 FPQGILGGDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGA 172
               I           +  RF           V       +      +V A +  V T  
Sbjct: 55  DHPKIKSISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPG 114

Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTK-YGSKV 231
           +    Q         R   +         I R     +      A +  + L K  G+  
Sbjct: 115 LPFDDQSGTIPNVGGRINGSPNEYVV-GWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAK 173

Query: 232 YIIHRRDSFRASKIMQNRALTNPKIDVI 259
                +             L   +  ++
Sbjct: 174 EGAECKSFPEDHADQVADWLAARQPKLV 201

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 42.6 bits (99), Expect = 4e-05
 Identities = 8/31 (25%), Positives = 14/31 (45%)

Query: 58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
           ++  IIG+G A    A   A+      +F+
Sbjct: 4  YSENIIIGAGAAGLFCAAQLAKLGKSVTVFD 34

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 5e-05
 Identities = 29/202 (14%), Positives = 53/202 (26%), Gaps = 34/202 (16%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEG---------WMANDIAPGGQLTTTSDVENFP 111
              IG G     +   AA    K  L E                          +  +  
Sbjct: 5   YIAIGGGSGGIASINRAAMYGQKCALIEAKELGGTCVNVGCVPKKVMWHAAQIREAIHMY 64

Query: 112 GFPQGILGGD--------------LMDRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTD 157
           G   G                    +DR          +   + +           +  +
Sbjct: 65  GPDYGFDTTINKFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVN 124

Query: 158 SKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAV-CDGAAPIFRDKP-------LA 209
            +++ AD +++ATG      + P +D   N  + A  V  +    I  DK        + 
Sbjct: 125 GETITADHILIATGGRPSHPREPAND---NINLEAAGVKTNEKGYIVVDKYQNTNIEGIY 181

Query: 210 VIGGGDSAMEEANFLTKYGSKV 231
            +G    A+E        G ++
Sbjct: 182 AVGDNTGAVELTPVAVAAGRRL 203

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 8e-05
 Identities = 10/83 (12%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 51  MDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF 110
           +D        V ++G+G      +   +    K +  +     D   GG+  + +  + +
Sbjct: 2   IDT----DYDVIVLGTGITECILSGLLSVDGKKVLHID---KQDH-YGGEAASVTLSQLY 53

Query: 111 PGFPQGILGGDLMDRCRNQSLRF 133
             F Q  +  +  +    +   +
Sbjct: 54  EKFKQNPISKEERESKFGKDRDW 76

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFEGW 90
          V +IG+GP  + AAI +A+  LK  L E +
Sbjct: 6  VIVIGAGPGGYVAAIKSAQLGLKTALIEKY 35

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 41.7 bits (96), Expect = 1e-04
 Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 8/55 (14%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP 114
            V ++G G +    A +        +L E   ++    GG + T        G+ 
Sbjct: 2   NVAVVGGGISGLAVAHHLRSRGTDAVLLE---SSAR-LGGAVGT----HALAGYL 48

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 11/34 (32%), Positives = 20/34 (58%)

Query: 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW 90
          ++T+  ++G+GP  + AAI AA+   K  + E  
Sbjct: 2  IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG 35

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 298 FFAIGHEPATKFVDGQ---LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAA 354
              +G  P T  +  +   + + + G I        TSVP +FA GD+       A  A+
Sbjct: 146 IELVGRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNIFAIGDIVP-GPALAHKAS 203

Query: 355 GTGCMAA 361
             G +AA
Sbjct: 204 YEGKVAA 210

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} Length = 292

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          +KT+V IIG+GP+         +A +  ++ E
Sbjct: 1  MKTQVAIIGAGPSGLLLGQLLHKAGIDNVILE 32

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 21/57 (36%), Gaps = 8/57 (14%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP 114
             KV IIGSG +   AA       +   L E   A D   GG++ T         + 
Sbjct: 5   TGKVIIIGSGVSGLAAARQLQSFGMDVTLLE---ARDR-VGGRVAT----FRKGNYV 53

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          +   V +IG GP+   AAI AA      +L +
Sbjct: 1  MHYDVIVIGGGPSGLMAAIGAAEEGANVLLLD 32

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 40.8 bits (94), Expect = 2e-04
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 50 AMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          A+         V ++GSG A  +AAI A  +  K IL E
Sbjct: 8  ALASAPHDTVDVVVVGSGGAGFSAAISATDSGAKVILIE 46

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFEGW 90
          + +IG G     AA  AAR   K  L E  
Sbjct: 4  LIVIGGGSGGMAAARRAARHNAKVALVEKS 33

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 40.5 bits (93), Expect = 2e-04
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 4/57 (7%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQG 116
            V I+G+G A  +AA   A A  +  + E   A++  PGG++ T  + E       G
Sbjct: 32  HVVIVGAGMAGLSAAYVLAGAGHQVTVLE---ASER-PGGRVRTYRNEEAGWYANLG 84

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFEGW 90
          V ++G GP  ++AA  AA   LK  + E +
Sbjct: 9  VVVLGGGPGGYSAAFAAADEGLKVAIVERY 38

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 40.1 bits (92), Expect = 3e-04
 Identities = 8/35 (22%), Positives = 14/35 (40%)

Query: 54 IQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          ++       +IG G A   AA+   +  L  I+  
Sbjct: 1  MKVQYCDSLVIGGGLAGLRAAVATQQKGLSTIVLS 35

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (91), Expect = 3e-04
 Identities = 9/28 (32%), Positives = 15/28 (53%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFE 88
          + IIG G     AA  AA+ + K ++ +
Sbjct: 6  LIIIGGGSGGLAAAKEAAKFDKKVMVLD 33

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 22/149 (14%), Positives = 42/149 (28%), Gaps = 21/149 (14%)

Query: 44  APKISNAMD---EIQTLKTKVCIIGSGPAAHTAAIYAARAELKPIL-FEGWMANDIAP-- 97
            PK+ + +D   +   +  KV IIG G      A+Y ++          G+         
Sbjct: 12  HPKVLSYLDVLRDKAPVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSS 71

Query: 98  ----------GGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG-----TQIFTETV 142
                     G Q+  +              G  L                   I   + 
Sbjct: 72  LQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSY 131

Query: 143 SKVDFKSRPFKVFTDSKSVLADTVIVATG 171
            K+D       +  +++ +  D V++  G
Sbjct: 132 QKIDDDGLHVVINGETQVLAVDNVVICAG 160

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 162

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 28/161 (17%), Positives = 49/161 (30%), Gaps = 14/161 (8%)

Query: 173 VAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY 232
           V +     G D    + +S   V    AP+     +A+IG G    + A +L++ G    
Sbjct: 1   VPRTPPIDGIDH--PKVLSYLDVLRDKAPV--GNKVAIIGCGGIGFDTAMYLSQPGESTS 56

Query: 233 II--HRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVS 290
                  + +     +Q     +P+   I  S       +      G    K       +
Sbjct: 57  QNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRT 116

Query: 291 DLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHT 331
            L   G+    G     + +D       DG  +   G T  
Sbjct: 117 TLLSRGVKMIPGVS--YQKIDD------DGLHVVINGETQV 149

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFEG 89
          V IIG GP  + AAI AA+   K    E 
Sbjct: 6  VVIIGGGPGGYVAAIKAAQLGFKTTCIEK 34

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 122

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.5 bits (86), Expect = 5e-04
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 6/100 (6%)

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN-----RALTNPKIDVIW 260
           K L +IGGG   +E  +  ++ GSKV ++  +    AS   +      + L    +D   
Sbjct: 24  KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKL 83

Query: 261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFA 300
           ++ V+ A    DK V+  + V++  T +  +L+   L  A
Sbjct: 84  STKVISAKRNDDKNVV-EIVVEDTKTNKQENLEAEVLLVA 122

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 39.0 bits (90), Expect = 5e-04
 Identities = 10/50 (20%), Positives = 17/50 (34%), Gaps = 4/50 (8%)

Query: 60  KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN 109
           K+ I+G+G +        A    +  + +     D   GG      D E 
Sbjct: 4   KILIVGAGFSGAVIGRQLAEKGHQVHIID---QRDH-IGGNSYDARDSET 49

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} Length = 167

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 38.2 bits (87), Expect = 6e-04
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 16/161 (9%)

Query: 208 LAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEA 267
           + ++G G    E A  L++   +V +I +      SK M +  +             L+ 
Sbjct: 3   VVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDW 61

Query: 268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQL----DLHSDGYII 323
           Y +   ++    + K +  G+   +   G         AT   +  L     +H+   I+
Sbjct: 62  YRKRGIEIRLAEEAKLIDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGIL 121

Query: 324 TKPGTTHTSVPGVFAAGDVQDKK----------YRQAVTAA 354
                  TS   V+A GD  +              QA   A
Sbjct: 122 IDD-NFRTSAKDVYAIGDCAEYSGIIAGTAKAAMEQARVLA 161

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-04
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 61  VCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFP 114
           V ++G G +   AA     + L  ++ E   A D   GG+  T   + N     
Sbjct: 2   VVVVGGGISGMAAAKLLHDSGLNVVVLE---ARDR-VGGRTYT---LRNQKVKY 48

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 38.8 bits (89), Expect = 6e-04
 Identities = 16/30 (53%), Positives = 17/30 (56%)

Query: 59 TKVCIIGSGPAAHTAAIYAARAELKPILFE 88
          T V IIGSG A   AA+ A  A  K IL E
Sbjct: 24 TDVVIIGSGGAGLAAAVSARDAGAKVILLE 53

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

 Score = 38.2 bits (87), Expect = 9e-04
 Identities = 6/32 (18%), Positives = 15/32 (46%)

Query: 57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE 88
             ++ ++G   +  TAA+    A +   ++E
Sbjct: 3  TTDRIAVVGGSISGLTAALMLRDAGVDVDVYE 34

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 7/30 (23%), Positives = 11/30 (36%)

Query: 61 VCIIGSGPAAHTAAIYAARAELKPILFEGW 90
            +IG G     +A  AA    +  + E  
Sbjct: 6  YLVIGGGSGGLASARRAAELGARAAVVESH 35

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.9 bits (84), Expect = 0.003
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)

Query: 54 IQTLKTKVCIIGSGPAAHTAAIYAARA--ELKPILFE 88
          +QT +  + I+G+G A   AAI AA+A    K  L  
Sbjct: 1  MQTFQADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 125

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 9/102 (8%)

Query: 206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQN-----RALTNPKIDVIW 260
             L +IGGG   +E     +  GS++ ++   D               +       +++ 
Sbjct: 27  GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMV 86

Query: 261 NSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG 302
           N+  +    + D   +                +   +  A G
Sbjct: 87  NTKTVAVEPKEDGVYV----TFEGANAPKEPQRYDAVLVAAG 124

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.003
 Identities = 21/125 (16%), Positives = 35/125 (28%), Gaps = 18/125 (14%)

Query: 49  NAMDEIQTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE 108
            ++++I      + IIG G      A    R           +                 
Sbjct: 28  RSLEKISREVKSITIIGGGFLGSELACALGRKARALGTEVIQL----------------F 71

Query: 109 NFPGFPQGILGGDLMDRCRNQSLRFGTQIFTET-VSKVDFKSRPFKV-FTDSKSVLADTV 166
              G    IL   L +    +  R G ++     V  V   S    +   D + V  D +
Sbjct: 72  PEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHI 131

Query: 167 IVATG 171
           + A G
Sbjct: 132 VAAVG 136

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} Length = 298

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 8/79 (10%)

Query: 58  KTKVCIIGSGPAAHTAAIYAARAELKPILFEG-------WMANDIAPGGQLTTTSDVENF 110
           +  V ++G+G +   A            + E        W  N   PG +    S    +
Sbjct: 7   EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRY-PGARCDIESIEYCY 65

Query: 111 PGFPQGILGGDLMDRCRNQ 129
               + +   +  +R  +Q
Sbjct: 66  SFSEEVLQEWNWTERYASQ 84

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 36.1 bits (82), Expect = 0.004
 Identities = 7/23 (30%), Positives = 10/23 (43%)

Query: 61 VCIIGSGPAAHTAAIYAARAELK 83
          + +IG+G     A   AA    K
Sbjct: 6  LVVIGAGSGGLEAGWNAASLHKK 28

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	382
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.91
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.84
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.84
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.84
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.83
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	99.82
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.81
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.8
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	99.79
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	99.77
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	99.75
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.75
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.74
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.73
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	99.72
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.71
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.69
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.69
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.68
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.67
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	99.67
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	99.64
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	99.64
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.61
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.55
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.54
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	99.53
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	99.52
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.51
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.51
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.5
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.5
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.5
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.49
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	99.48
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.48
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.48
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.47
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.46
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.46
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.45
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	99.45
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.43
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.43
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.42
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.42
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.4
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.4
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.38
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	99.38
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	99.37
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	99.37
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.36
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	99.36
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.36
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.36
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	99.36
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	99.35
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.34
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	99.34
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.34
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.34
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	99.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	99.33
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.31
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.31
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	99.3
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.28
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	99.28
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	99.28
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.26
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	99.25
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.25
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	99.25
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.25
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	99.22
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	99.21
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.21
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	99.19
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	99.18
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.17
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.15
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.15
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	99.14
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	99.13
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.11
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.11
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	99.1
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.07
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	99.06
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.05
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	99.05
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	99.04
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.02
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.99
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.98
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.95
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.95
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	98.94
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.91
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.91
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	98.91
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.91
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.87
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.87
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	98.86
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.84
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	98.82
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.81
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	98.78
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.78
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.77
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	98.76
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.75
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	98.69
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.69
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.68
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.67
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.63
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.6
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.6
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	98.56
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.51
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.48
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.44
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	98.39
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	98.38
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.36
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	98.34
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.21
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.19
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	98.18
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.18
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.11
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.05
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.98
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.92
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	97.92
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.92
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.91
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	97.89
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.87
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	97.85
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	97.85
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.76
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	97.71
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.69
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	97.66
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	97.64
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.6
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	97.55
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	97.54
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.52
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.52
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	97.44
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.38
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	97.35
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.29
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	97.23
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.16
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.11
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.06
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.0
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.89
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	96.74
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	96.73
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	96.72
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	96.71
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.69
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.69
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	96.66
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	96.65
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.56
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	96.56
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.56
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	96.51
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	96.47
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	96.45
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	96.42
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	96.39
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.35
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	96.33
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.3
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	96.27
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	95.98
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.97
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	95.91
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.86
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	95.76
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	95.76
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.72
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	95.69
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	95.54
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	95.39
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	95.23
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	95.15
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	95.12
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	95.09
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	94.9
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	94.79
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	94.75
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.68
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	94.68
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	94.56
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	94.55
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	94.53
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.49
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	94.31
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	94.31
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.18
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	94.1
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	94.1
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	93.95
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	93.93
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	93.93
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	93.76
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.73
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	93.66
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	93.62
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.62
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	93.59
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	93.56
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.42
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	93.23
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	93.07
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	92.99
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.95
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.86
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	92.83
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	92.61
d1fcda2	141	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.54
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	92.51
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.47
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	92.44
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	92.37
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	92.28
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.06
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	91.95
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.91
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	91.77
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	91.49
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	91.49
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	91.47
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	91.29
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.29
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	91.21
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	91.01
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	90.93
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	90.79
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.3
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.28
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.27
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	90.21
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	90.13
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	90.1
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	90.07
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	90.02
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	89.97
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	89.95
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.88
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	89.87
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.76
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	89.74
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	89.71
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	89.35
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	89.32
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	89.28
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	89.14
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	88.99
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	88.98
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	88.91
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	88.85
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	88.71
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	88.55
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.43
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	88.27
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	88.14
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	88.04
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	87.88
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	87.85
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	87.78
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	87.59
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	87.11
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	86.91
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	86.88
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	86.85
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	86.84
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	86.75
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	86.62
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	86.6
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	86.21
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	86.19
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	85.93
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.9
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	85.63
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.54
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	85.48
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.46
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	85.13
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.0
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	84.87
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.84
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	84.39
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	84.37
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	84.24
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	84.16
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	84.11
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	83.96
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	83.67
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	83.5
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	83.46
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	83.44
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	83.39
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	83.3
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	83.29
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	83.17
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	83.12
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.06
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	82.59
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	82.46
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	82.37
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	82.34
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	82.25
d2b69a1	312	UDP-glucuronate decarboxylase 1 {Human (Homo sapie	82.24
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	82.2
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	81.96
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	81.9
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	81.89
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	81.83
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	81.62
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	81.57
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	81.56
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	81.46
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	81.45
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	80.8
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	80.71
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	80.61
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	80.54
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.53
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	80.49
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	80.34
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	80.31
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	80.28
d1rpna_	321	GDP-mannose 4,6-dehydratase {Pseudomonas aeruginos	80.25
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	80.1

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.91  E-value=7.9e-24  Score=177.48  Aligned_cols=190  Identities=81%  Similarity=1.274  Sum_probs=161.4

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      +...+||+||||||+|++||..|++.|++++|+|+........++.+.......++++++......++...+++++.+++
T Consensus         2 ~~~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g   81 (192)
T d1vdca1           2 ETHNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFG   81 (192)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred             CcccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhc
Confidence            34578999999999999999999999999999997655555667777766666778888888889999999999999999


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCC
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGG  214 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G  214 (382)
                      +++..++|..++..++.+.+.++...+.+|.+++++|...                                        
T Consensus        82 ~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~~----------------------------------------  121 (192)
T d1vdca1          82 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVA----------------------------------------  121 (192)
T ss_dssp             CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEE----------------------------------------
T ss_pred             ceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeeee----------------------------------------
Confidence            9998888999998888888888888899999999999721                                        


Q ss_pred             chHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          215 DSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       215 ~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                                                                                                      
T Consensus       122 --------------------------------------------------------------------------------  121 (192)
T d1vdca1         122 --------------------------------------------------------------------------------  121 (192)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          295 SGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       295 D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                            .|..|++.++..++.++++|++.+|+..++|+.|+||++|||.+...+++..|+.+|..||..+.+||..
T Consensus       122 ------~g~~p~~~~~~~~veld~~G~i~~~~~~~~Ts~~GV~a~GDv~~~~~r~~v~A~g~G~~aA~~~~~yl~~  191 (192)
T d1vdca1         122 ------KGHEPATKFLDGGVELDSDGYVVTKPGTTQTSVPGVFAAGDVQDKKYRQAITAAGTGCMAALDAEHYLQE  191 (192)
T ss_dssp             ------CCEEESCGGGTTSSCBCTTSCBCCCTTSCBCSSTTEEECGGGGCSSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cccCchHHHhcCceeecCCCeEEeCCCceEecCCCEEEeeecCCcccceEEEEEechHHHHHHHHHHHhh
Confidence                  1233344444446778899999999889999999999999999877788999999999999999999975

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=6.4e-20  Score=153.13  Aligned_cols=114  Identities=46%  Similarity=0.782  Sum_probs=102.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      +.+||+||||||+|++||..|++.|++|+|||+.     ..++.+......+++++++......++.+.+...+.+.++.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~-----~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-----EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETE   78 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-----STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEee-----cccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcE
Confidence            5689999999999999999999999999999953     45777777788888999999999999999999999999999


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                      +..++|+.++..++.+.+......+.++.+++++|..++
T Consensus        79 ~~~~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~~  117 (190)
T d1trba1          79 IIFDHINKVDLQNRPFRLNGDNGEYTCDALIIATGASAR  117 (190)
T ss_dssp             EECCCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEEC
T ss_pred             EecceeEEEecCCCcEEEEEeeeeEeeeeeeeecceeee
Confidence            988899999999888899888889999999999997654

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.84  E-value=5.6e-22  Score=169.85  Aligned_cols=177  Identities=24%  Similarity=0.206  Sum_probs=121.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccC------------------CCC---CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENF------------------PGF---PQ  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~------------------~~~---~~  115 (382)
                      .+|||+||||||||+++|..++++|.+|+|||    +....||.+.........                  .++   ..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie----~~~~~GG~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~g~~~~~~   77 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIE----KRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNV   77 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHHHTCCEEEEE----CSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCcEEEEE----ecCCCCCeeecchhhhhhhhhHhHHHHHHHhhhhhhcCeecccc
Confidence            46999999999999999999999999999999    555678765432211000                  000   00


Q ss_pred             CCCh-----------HHHHHHHHHHHHHcCcEEEEeeEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          116 GILG-----------GDLMDRCRNQSLRFGTQIFTETVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       116 ~~~~-----------~~~~~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ....           ..+...+.......+++++......++.....+. .......+.+|.+|+|||++|.        
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~a~~VIiATGs~~~--------  149 (221)
T d1dxla1          78 EIDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDVK--------  149 (221)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEEC--------
T ss_pred             eecHHHHHHHHHHHHHHHhhHHHHhhhcCCeEEEEeccccccccccccccccccccccccceEEEeECCCcc--------
Confidence            0111           1233444555667789988876555543221111 1123456899999999997531        


Q ss_pred             cccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCce
Q 016820          184 AFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSV  263 (382)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~  263 (382)
                                                                                                      
T Consensus       150 --------------------------------------------------------------------------------  149 (221)
T d1dxla1         150 --------------------------------------------------------------------------------  149 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh---cccccccCCCceeeCCCCCcCCCCceEEec
Q 016820          264 VLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPGVFAAG  340 (382)
Q Consensus       264 v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~vya~G  340 (382)
                                                            |++|+++.+   +.++.+++.|+|.||+ .++|+.|+|||+|
T Consensus       150 --------------------------------------gr~p~~~~l~l~~~gv~~~~~G~i~vd~-~~~T~v~gi~A~G  190 (221)
T d1dxla1         150 --------------------------------------GRTPFTSGLNLDKIGVETDKLGRILVNE-RFSTNVSGVYAIG  190 (221)
T ss_dssp             --------------------------------------CEEECCTTSCCTTTTCCBCSSSCBCCCT-TCBCSSTTEEECS
T ss_pred             --------------------------------------CccccCCCCChHhcCceEcCCCcEEeCC-CcccCCCCEEEEe
Confidence                                                  223333322   2478889999999998 8999999999999


Q ss_pred             ccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          341 DVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       341 D~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ||.+. +.+.+.|+.+|+.||++|+
T Consensus       191 Dv~~g-~~l~~~A~~~g~~aa~~i~  214 (221)
T d1dxla1         191 DVIPG-PMLAHKAEEDGVACVEYLA  214 (221)
T ss_dssp             TTSSS-CCCHHHHHHHHHHHHHHHT
T ss_pred             ccCCC-cccHHHHHHHHHHHHHHHc
Confidence            99974 5789999999999998773

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.84  E-value=7.1e-21  Score=163.03  Aligned_cols=62  Identities=29%  Similarity=0.356  Sum_probs=51.8

Q ss_pred             CCCCChhhh---cccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          302 GHEPATKFV---DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       302 G~~p~~~~~---~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |++|+++.+   ..++.++++|+|.||+ .++|+.|+|||+|||.+. +.+.+.|+.+|+.||++|.
T Consensus       150 G~~p~~~~l~l~~~gv~~~~~G~I~vd~-~~~T~~~gvyA~GDv~~~-~~~~~~A~~~g~~aa~~i~  214 (223)
T d1ebda1         150 GRRPNTDELGLEQIGIKMTNRGLIEVDQ-QCRTSVPNIFAIGDIVPG-PALAHKASYEGKVAAEAIA  214 (223)
T ss_dssp             CEEESCSSSSTTTTTCCBCTTSCBCCCT-TCBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHT
T ss_pred             cceecCCCCChHhcCceECCCCCEeECC-CCCCCCCCEEEEeccCCC-cccHHHHHHHHHHHHHHHc
Confidence            445555543   2478889999999998 899999999999999974 5788999999999999986

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.83  E-value=2e-20  Score=157.36  Aligned_cols=153  Identities=24%  Similarity=0.330  Sum_probs=121.8

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcchHH----H--------------HHHhccCCCcEEEcCceeEE
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRASKI----M--------------QNRALTNPKIDVIWNSVVLE  266 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~~~~----~--------------~~~~l~~~gv~~~~~~~v~~  266 (382)
                      +|+|||+|++|+|+|..|.+++  .+|+++++.+.+.+...    .              ..+.++++||++++++++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~V~~   81 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFISFLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEITA   81 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSSBCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcccccccCcchhhcccccchHHHHHhhHHHHHHCCcEEEEeeceee
Confidence            6999999999999999999874  58999998776532110    0              02345668999999999999


Q ss_pred             EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC--------ChhhhcccccccCCCceeeCCCCCcCCCCceEE
Q 016820          267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP--------ATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFA  338 (382)
Q Consensus       267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p--------~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya  338 (382)
                      ++.++++     +.+.+..++++..+++|.+++++|..|        +..++...+.++++|++.||+ +++|+.|+|||
T Consensus        82 i~~~~~~-----v~~~~~~~g~~~~~~~D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~-~~~T~~~~IyA  155 (198)
T d1nhpa1          82 IQPKEHQ-----VTVKDLVSGEERVENYDKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDE-YMRTSEPDVFA  155 (198)
T ss_dssp             EETTTTE-----EEEEETTTCCEEEEECSEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCT-TCBCSSTTEEE
T ss_pred             Eeecccc-----ceeeecccccccccccceeeEeecceeecccccccccccccccceeccCCceecCC-cccccccceEE
Confidence            9988764     777766667778899999999998765        445555567788999999998 88999999999


Q ss_pred             ecccCCch---------hhHHHHHHhhHHHHHHHHH
Q 016820          339 AGDVQDKK---------YRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       339 ~GD~~~~~---------~~~~~~a~~~g~~aa~~i~  365 (382)
                      +|||+...         ...+..|.+||+.+|+||.
T Consensus       156 ~GD~a~~~~~~~~~~~~~~~a~~A~~~g~~aa~ni~  191 (198)
T d1nhpa1         156 VGDATLIKYNPADTEVNIALATNARKQGRFAVKNLE  191 (198)
T ss_dssp             CGGGSCEEEGGGTEEECCCCHHHHHHHHHHHHHTSS
T ss_pred             ecceeecccccCCCcccccHHHHHHHHHHHHHHhhC
Confidence            99998532         2357789999999999873

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-20  Score=158.45  Aligned_cols=179  Identities=21%  Similarity=0.198  Sum_probs=124.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc--------------------ccCCCCCCCC
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV--------------------ENFPGFPQGI  117 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~--------------------~~~~~~~~~~  117 (382)
                      .||++||||||+|+++|..++++|.+|+|||+.     ..||.+......                    ...+......
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-----~~GG~c~n~g~~~~k~l~~~a~~~~~~~~~~~~~~~~~~~~~   77 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-----KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKF   77 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGTSCCCCCCC
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-----CCCCccccchhhhhhhhhhHHHHHHHHhhhhhccccccccch
Confidence            589999999999999999999999999999952     456654322110                    1111111222


Q ss_pred             ChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcccc
Q 016820          118 LGGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFW  186 (382)
Q Consensus       118 ~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~  186 (382)
                      ......           ......+++.+++++.+........  ..++......+.++.+++++|+.|..|.        
T Consensus        78 ~~~~~~~~~~~~v~~~~~~~~~~~~~~gV~~i~G~a~~~~~~--~~~~~~~~~~~~~~~~~iatG~~p~vp~--------  147 (221)
T d3grsa1          78 NWRVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDP--KPTIEVSGKKYTAPHILIATGGMPSTPH--------  147 (221)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEECSCS--SCEEEETTEEEECSCEEECCCEEECCCC--------
T ss_pred             hhhhhhhhhheEEeeeccchhhhhccCceEEEEEeeeecccc--ceeeeeeccccccceeEEecCccccCCC--------
Confidence            222222           2334455677999988864443322  3345556778999999999999887652        


Q ss_pred             CCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEE
Q 016820          187 NRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLE  266 (382)
Q Consensus       187 ~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~  266 (382)
                                                                                                      
T Consensus       148 --------------------------------------------------------------------------------  147 (221)
T d3grsa1         148 --------------------------------------------------------------------------------  147 (221)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh---hcccccccCCCceeeCCCCCcCCCCceEEecccC
Q 016820          267 AYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF---VDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQ  343 (382)
Q Consensus       267 i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~---~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~  343 (382)
                                                         |+.|++..   -..++.++++|+|.||+ .++|+.|+|||+|||.
T Consensus       148 -----------------------------------~r~p~~~~l~L~~~gv~~~~~G~I~vd~-~~~T~~~gvyA~GDv~  191 (221)
T d3grsa1         148 -----------------------------------ERVPNTKDLSLNKLGIQTDDKGHIIVDE-FQNTNVKGIYAVGDVC  191 (221)
T ss_dssp             -----------------------------------TEEESCTTTTGGGTTCCBCTTSCBCCCT-TCBCSSTTEEECGGGG
T ss_pred             -----------------------------------ccccCCCCcCchhcCcEECCCccEEeCC-CccccCCcEEEEEEcc
Confidence                                               00122221   12467889999999999 7999999999999998


Q ss_pred             CchhhHHHHHHhhHHHHHHHHHHHH
Q 016820          344 DKKYRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       344 ~~~~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      +. +.+.+.|+.+|+.+|++|..+.
T Consensus       192 ~~-~~l~~~A~~~G~~aa~~~~~~~  215 (221)
T d3grsa1         192 GK-ALLTPVAIAAGRKLAHRLFEYK  215 (221)
T ss_dssp             TS-SCCHHHHHHHHHHHHHHHHSCC
T ss_pred             CC-cCcHHHHHHHHHHHHHHHcCCC
Confidence            73 5678889999999998877643

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.81  E-value=1.8e-19  Score=158.03  Aligned_cols=181  Identities=23%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------------ccCCCC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------------ENFPGF  113 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------------~~~~~~  113 (382)
                      ..+++|++|||||++|+.+|..++++|.+|++||    .....||.+....+.                     ..++..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve----~~~~lGG~c~n~GcvP~k~l~~~a~~~~~~~~~~~~~~~~~~  114 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVD----RWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDM  114 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEE----SSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCC
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHHCCCeEEEEe----ccCccccccccccccchHHHHhhHHhHHHHHHhhhhcccccc
Confidence            3467999999999999999999999999999999    555677765432211                     001111


Q ss_pred             C-CCCChHHHHHHHHHH------------HHHcCcEE-EEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820          114 P-QGILGGDLMDRCRNQ------------SLRFGTQI-FTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       114 ~-~~~~~~~~~~~~~~~------------~~~~gi~~-~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      . .........+.+...            ....+... +.+....++..    ++..++.++++|.+|+|+|.+|+.+.+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~~----~v~~~g~~i~ad~viiAtG~~P~~~~i  190 (261)
T d1mo9a1         115 TEKVVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNH----TVEAAGKVFKAKNLILAVGAGPGTLDV  190 (261)
T ss_dssp             TTCCCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETT----EEEETTEEEEBSCEEECCCEECCCCCS
T ss_pred             ccccccHHHHHHHHHHHHHhhhhhHHHHhhhcccceeEeeeEEEEeeec----ccccccceEeeeeeeeccCCCCCcCcc
Confidence            1 112233333222211            11223333 33344444422    455678889999999999999998877


Q ss_pred             CCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEE
Q 016820          180 PGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI  259 (382)
Q Consensus       180 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~  259 (382)
                      ++...                                ..+++.                                     
T Consensus       191 ~~~~~--------------------------------~~~l~~-------------------------------------  201 (261)
T d1mo9a1         191 PEQPR--------------------------------SAELAK-------------------------------------  201 (261)
T ss_dssp             TCEEC--------------------------------CHHHHH-------------------------------------
T ss_pred             ccccc--------------------------------cccccc-------------------------------------
Confidence            65331                                001110                                     


Q ss_pred             cCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEe
Q 016820          260 WNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAA  339 (382)
Q Consensus       260 ~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~  339 (382)
                                                                         ..++.++++|+|.||+ .++|+.|+|||+
T Consensus       202 ---------------------------------------------------~~Gl~~~~~G~I~Vn~-~~~Ts~~~IyA~  229 (261)
T d1mo9a1         202 ---------------------------------------------------ILGLDLGPKGEVLVNE-YLQTSVPNVYAV  229 (261)
T ss_dssp             ---------------------------------------------------HHTCCBCTTSCBCCCT-TSBCSSTTEEEC
T ss_pred             ---------------------------------------------------ceeeeeccCCEEEeCC-CcccCCCCEEEE
Confidence                                                               0156678899999998 899999999999


Q ss_pred             cccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          340 GDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       340 GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |||.+. +.+++.|+.+|+.||.+|.
T Consensus       230 GDv~~~-~~l~~~A~~~G~~aa~~i~  254 (261)
T d1mo9a1         230 GDLIGG-PMEMFKARKSGCYAARNVM  254 (261)
T ss_dssp             GGGGCS-SCSHHHHHHHHHHHHHHHT
T ss_pred             EEeCCC-cccHHHHHHHHHHHHHHHC
Confidence            999874 6789999999999999985

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.80  E-value=4.5e-20  Score=153.11  Aligned_cols=150  Identities=19%  Similarity=0.232  Sum_probs=111.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--cc-----hHHHH---------HHhccCCCcEEEcCceeEEEEe
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--RA-----SKIMQ---------NRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--~~-----~~~~~---------~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      .+|+|||+|++|+|+|..|.+.|.+++++.+.+..  +.     +..+.         .......+++++.+..+.++..
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~i~~   83 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGDEAERPYDRPPLSKDFMAHGDAEKIRLDCKRAPEVEWLLGVTAQSFDP   83 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEESSCSCCBCSGGGGTTHHHHCCGGGSBCCGGGSTTCEEEETCCEEEEET
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEecccccchhhHHHhhhhhhhhhhhhHHHHHhhcCCeEEEEecccccccc
Confidence            56999999999999999999999776665543332  11     11111         1223456899999999999988


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc----cccccCCCceeeCCCCCcCCCCceEEecccCCc
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG----QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK  345 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~----~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~  345 (382)
                      +...     +.+.     ++.++++|.+++++|.+|+..+...    ...+..++.|.||+ +++|+.|+|||+|||+..
T Consensus        84 ~~~~-----~~~~-----~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~-~~~ts~~~IyA~GD~a~~  152 (183)
T d1d7ya1          84 QAHT-----VALS-----DGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDA-YGRTTCPDVYALGDVTRQ  152 (183)
T ss_dssp             TTTE-----EEET-----TSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCT-TCBCSSTTEEECGGGEEE
T ss_pred             ccce-----eEec-----CCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEecc-ceeccccccchhhhhhcc
Confidence            7752     3332     3468999999999999998765542    22234457799998 788999999999999752


Q ss_pred             h---------hhHHHHHHhhHHHHHHHHHH
Q 016820          346 K---------YRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       346 ~---------~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +         ...+..|..||+.+|+||.+
T Consensus       153 ~~~~~g~~~~~~~~~~A~~qg~~aa~nil~  182 (183)
T d1d7ya1         153 RNPLSGRFERIETWSNAQNQGIAVARHLVD  182 (183)
T ss_dssp             ECTTTCSEEECCCHHHHHHHHHHHHHHHHC
T ss_pred             ceeeCCceechhHHHHHHHHHHHHHHHHcC
Confidence            2         23688899999999999963

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=7.2e-19  Score=151.72  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=44.1

Q ss_pred             ccccC-CCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          314 LDLHS-DGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       314 ~~~~~-~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      +.++. .|+|.||+ .++|+.|+|||+|||...++.+++.|+.+|+.+|++|.
T Consensus       176 v~l~~~~g~I~vd~-~~~TsvpgIyA~GDv~~g~~~l~~~A~~eG~~aa~~~~  227 (235)
T d1h6va1         176 VKINEKTGKIPVTD-EEQTNVPYIYAIGDILEGKLELTPVAIQAGRLLAQRLY  227 (235)
T ss_dssp             CCCCSSSCCBCCCT-TSBCSSTTEEECGGGBTTSCCCHHHHHHHHHHHHHHHH
T ss_pred             eeeccccCccccCC-ccccCCCCEEEEEeccCCCcccHHHHHHHHHHHHHHHc
Confidence            34444 58999999 79999999999999987667789999999999999885

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.77  E-value=1.2e-18  Score=142.12  Aligned_cols=144  Identities=15%  Similarity=0.125  Sum_probs=107.4

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcch-----HHHH------------HHhccCCCcEEEcCceeEEEEe
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRAS-----KIMQ------------NRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~-----~~~~------------~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      +|+|||+|++|+|+|..|.+ +.+||++++.+.+...     ..+.            .+.+.+.+++++.++.++.++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~i~~   80 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPVPYYSKPMLSHYIAGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKLIDR   80 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSSCCCCSTTHHHHHTTSSCGGGGCSSCHHHHHHHTEEEECSCCEEEEET
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEeccccccccccchhhhhhhhhhhhhhhHHHHHHHHhccceeeeecccccccc
Confidence            79999999999999999976 6799999987654221     1100            1234457899999999999977


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCch---
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK---  346 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~---  346 (382)
                      ...      +...+   +  .++++|.+++++|..|+......++..+  +.+.+|+ +++|+.|+|||+|||+...   
T Consensus        81 ~~~------~~~~~---~--~~i~~D~li~a~G~~~~~~~~~~gl~~~--~~i~v~~-~~~t~~~~i~aiGD~~~~~~~~  146 (167)
T d1xhca1          81 GRK------VVITE---K--GEVPYDTLVLATGAPNVDLARRSGIHTG--RGILIDD-NFRTSAKDVYAIGDCAEYSGII  146 (167)
T ss_dssp             TTT------EEEES---S--CEEECSEEEECCCEECCHHHHHTTCCBS--SSEECCT-TSBCSSTTEEECGGGEEBTTBC
T ss_pred             ccc------ccccc---c--cccccceeEEEEEecCCchhhhcCceeC--Cceeecc-ccEecCCCeEEeeecccCCCeE
Confidence            653      44333   3  4699999999999987643333455543  4588888 8889999999999997532   


Q ss_pred             hhHHHHHHhhHHHHHHHHH
Q 016820          347 YRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       347 ~~~~~~a~~~g~~aa~~i~  365 (382)
                      ++.+..|+.+|+.+|++|.
T Consensus       147 ~~~~~~a~~~a~~~a~~i~  165 (167)
T d1xhca1         147 AGTAKAAMEQARVLADILK  165 (167)
T ss_dssp             CCSHHHHHHHHHHHHHHHT
T ss_pred             EChHHHHHHHHHHHHHHcC
Confidence            4577889999999998874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=3.5e-18  Score=147.10  Aligned_cols=52  Identities=27%  Similarity=0.337  Sum_probs=46.6

Q ss_pred             ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       312 ~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      .++.++++|+|.||+ +++|+.|+|||+|||.+. +.+++.|..+|+.||.||.
T Consensus       174 ~gv~~~~~G~I~vd~-~~~T~~~gIyA~GDv~~~-~~l~~~A~~~g~~aa~~~~  225 (233)
T d1xdia1         174 VGIQLGRGNYLTVDR-VSRTLATGIYAAGDCTGL-LPLASVAAMQGRIAMYHAL  225 (233)
T ss_dssp             TTCCCBTTTBCCCCS-SSBCSSTTEEECSGGGTS-CSCHHHHHHHHHHHHHHHT
T ss_pred             hhhcccCCCcCCcCC-CcccCCCCEEEEEEeCCC-chhHHHHHHHHHHHHHHHc
Confidence            356788999999998 899999999999999874 5788899999999999996

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.75  E-value=2.5e-17  Score=140.41  Aligned_cols=114  Identities=25%  Similarity=0.340  Sum_probs=75.4

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCc---------------c---cCC--CC-
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDV---------------E---NFP--GF-  113 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~---------------~---~~~--~~-  113 (382)
                      ++.++|++||||||+|+++|..++++|.+|+|||+.     .+||.+....+.               .   ...  ++ 
T Consensus         2 ~~~~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-----~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~   76 (220)
T d1lvla1           2 QTIQTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-----ALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGIS   76 (220)
T ss_dssp             CCEECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-----CTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCC
T ss_pred             CccccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-----CCCCcccccccccchhhhhhHHHHhhhhhccccccceEE
Confidence            346799999999999999999999999999999952     467764422110               0   000  11 


Q ss_pred             --CCCCChHHHH-----------HHHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          114 --PQGILGGDLM-----------DRCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       114 --~~~~~~~~~~-----------~~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                        ..........           ........+.+++++.++...++.    ..+..+...+.+|.+|+|||++|..+
T Consensus        77 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~~~~~----~~~~~~~~~i~a~~viiAtG~~p~~l  149 (220)
T d1lvla1          77 VASPRLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDG----KQVEVDGQRIQCEHLLLATGSSSVEL  149 (220)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEET----TEEEETTEEEECSEEEECCCEEECCB
T ss_pred             eccceehHHHHhhhheeEEeeeccchhhhhccCceEEEEeeecccCc----ccccccceeEeeceeeEcCCCCcccc
Confidence              0111222222           223344556788888886555543    24555677899999999999998654

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.74  E-value=2e-18  Score=143.13  Aligned_cols=150  Identities=19%  Similarity=0.151  Sum_probs=107.6

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--ch-----HHH-------------HHHhccCCCcEEEcCcee
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--AS-----KIM-------------QNRALTNPKIDVIWNSVV  264 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--~~-----~~~-------------~~~~l~~~gv~~~~~~~v  264 (382)
                      +++|+|||+|++|+|+|..|.+.+.+++++...+...  ..     ..+             ........+..+..+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGTQV   82 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSCCE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecCccccchhhhHHHHHHHHhhhhhhhhhhhhhhhhcccceeeecccee
Confidence            6799999999999999999999998887776555321  00     000             011223345666667777


Q ss_pred             EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc--ccccccCCCceeeCCCCCcCCCCceEEeccc
Q 016820          265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD--GQLDLHSDGYIITKPGTTHTSVPGVFAAGDV  342 (382)
Q Consensus       265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~  342 (382)
                      ..+..+..       .+..   .++.++++|.+++++|.+|+.+.+.  ....+..+|++.||+ +++|+.|+||++|||
T Consensus        83 ~~~~~~~~-------~v~~---~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~-~~~ts~~~vya~GD~  151 (185)
T d1q1ra1          83 TAINRDRQ-------QVIL---SDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINE-HMQTSDPLIMAVGDC  151 (185)
T ss_dssp             EEEETTTT-------EEEE---TTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCT-TSBCSSTTEEECGGG
T ss_pred             eeeccccc-------EEEe---eceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCC-ccccchhhhhcchhh
Confidence            77766653       2222   3346899999999999987654332  133445578899998 888999999999999


Q ss_pred             CCch---------hhHHHHHHhhHHHHHHHHH
Q 016820          343 QDKK---------YRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       343 ~~~~---------~~~~~~a~~~g~~aa~~i~  365 (382)
                      +..+         ...+..|.+||+.+|++|+
T Consensus       152 ~~~~~~~~~~~~~~~~a~~A~~~g~~aa~~i~  183 (185)
T d1q1ra1         152 ARFHSQLYDRWVRIESVPNALEQARKIAAILC  183 (185)
T ss_dssp             EEEEETTTTEEEECCSHHHHHHHHHHHHHHHT
T ss_pred             hccccccCCcccchhhHHHHHHHHHHHHHHcc
Confidence            8632         2478999999999999884

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.73  E-value=1.9e-18  Score=148.08  Aligned_cols=51  Identities=33%  Similarity=0.432  Sum_probs=44.4

Q ss_pred             cccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          313 QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       313 ~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ++.++++|+|.+|+ .++|+.|+|||+|||... +.+.+.|..+|..+|.+|+
T Consensus       172 gv~l~~~G~i~vd~-~~~T~vpgiyA~GDv~~g-~~l~~~A~~~G~~aa~~i~  222 (229)
T d3lada1         172 GVTLDERGFIYVDD-YCATSVPGVYAIGDVVRG-AMLAHKASEEGVVVAERIA  222 (229)
T ss_dssp             SCCBCTTSCBCCCT-TSBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHH
T ss_pred             CeeecCCCcEEecc-cccCCCCCEEEEeCCcch-HHHHHHHHHHHHHHHHHHc
Confidence            56678899999998 889999999999999864 5678889999999998775

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=4.4e-19  Score=144.67  Aligned_cols=123  Identities=27%  Similarity=0.325  Sum_probs=97.9

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ...+++|+|||||||||++|..|+++|++|+|+|    +...+||.+.....      .|......++.+++.+.+++.|
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E----~~~~~GG~l~~~~~------~p~~~~~~~~~~~~~~~~~~~g  109 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFD----AHSEIGGQFNIAKQ------IPGKEEFYETLRYYRRMIEVTG  109 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEE----SSSSSCTTHHHHTT------STTCTTHHHHHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEe----ccCccCceEEEEEe------CcccchHHHHHHHHHHhhhcCC
Confidence            3456899999999999999999999999999999    66788888764322      2334566789999999999999


Q ss_pred             cEEEEee-EEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcC
Q 016820          135 TQIFTET-VSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGG  213 (382)
Q Consensus       135 i~~~~~~-v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~  213 (382)
                      ++++.++ |+             .+....+|.||+|||..|+.+.+|+.+                    .+++++|+|+
T Consensus       110 V~i~l~~~Vt-------------~~~~~~~d~vilAtG~~~~~~~~pg~~--------------------~g~~v~vigg  156 (179)
T d1ps9a3         110 VTLKLNHTVT-------------ADQLQAFDETILASGIPNRALAQPLID--------------------SGKTVHLIGG  156 (179)
T ss_dssp             CEEEESCCCC-------------SSSSCCSSEEEECCCEECCTTHHHHHT--------------------TTCCEEECGG
T ss_pred             eEEEeCCEEc-------------ccccccceeEEEeecCCCcccccchhc--------------------cCCEEEEECC
Confidence            9998884 31             122357899999999988777665532                    3689999999


Q ss_pred             CchHHHH
Q 016820          214 GDSAMEE  220 (382)
Q Consensus       214 G~~a~e~  220 (382)
                      |.+++++
T Consensus       157 gd~a~~~  163 (179)
T d1ps9a3         157 CDVAMEL  163 (179)
T ss_dssp             GTCCSSC
T ss_pred             cHhhhhc
Confidence            9998876

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.71  E-value=1.9e-16  Score=135.80  Aligned_cols=74  Identities=23%  Similarity=0.374  Sum_probs=58.4

Q ss_pred             EEEecCeEEEeeCCC-CChhhh--c-ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          290 SDLKVSGLFFAIGHE-PATKFV--D-GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       290 ~~~~~D~vi~~~G~~-p~~~~~--~-~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ....++.++++.|.+ |.....  + .++.++++|+|.||+ .++|+.|+|||+|||.+. +.+++.|+.+|+.||.+|+
T Consensus       145 ~~~~~~~~~l~~~~~~~~~~~~~~e~~g~~~d~~G~I~vd~-~~~TsvpgVyAaGDv~~~-~~l~~~A~~eG~~Aa~~i~  222 (229)
T d1ojta1         145 KIVAFKNCIIAAGSRAPNGKLISAEKAGVAVTDRGFIEVDK-QMRTNVPHIYAIGDIVGQ-PMLAHKAVHEGHVAAENCA  222 (229)
T ss_dssp             EEEEEEEEEECCCEEEECGGGTTGGGTTCCCCTTSCCCCCT-TSBCSSTTEEECGGGTCS-SCCHHHHHHHHHHHHHHHT
T ss_pred             cceecceEEEEecccCCcccccchhhhCccCCCCCCEEcCC-CccCCCCCEEEEEecCCC-cchHHHHHHHHHHHHHHHc
Confidence            345566666666554 544332  2 578899999999998 899999999999999974 5788999999999999874

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.69  E-value=2e-17  Score=136.64  Aligned_cols=156  Identities=16%  Similarity=0.193  Sum_probs=109.9

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcch---HHHH------------HHhccCCCcEEEcCceeEEE
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRAS---KIMQ------------NRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~~---~~~~------------~~~l~~~gv~~~~~~~v~~i  267 (382)
                      +|+|+|||+|++|+++|..|.+.+  .+||++++.+.+...   ....            ...+...++.+..+ ....+
T Consensus         2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~   80 (186)
T d1fcda1           2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKHGYDGLRAHGIQVVHD-SATGI   80 (186)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEECSHHHHTTTEEEECC-CEEEC
T ss_pred             CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhhhhhhccccceeEeee-eeEee
Confidence            689999999999999999999987  489999988765211   1000            11223456766644 33333


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcc---------cccccCCCceeeCCC-CCcCCCCceE
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDG---------QLDLHSDGYIITKPG-TTHTSVPGVF  337 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~---------~~~~~~~g~i~vd~~-~~~t~~~~vy  337 (382)
                      .....       .+..   .++..+++|.+++|+|.+|+...+..         ++. ...+++.+++. +..++.++||
T Consensus        81 ~~~~~-------~~~~---~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~  149 (186)
T d1fcda1          81 DPDKK-------LVKT---AGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLT-NDAGWCPVDIKTFESSIHKGIH  149 (186)
T ss_dssp             CTTTT-------EEEE---TTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCC-CTTSSEEBCSSSCBBSSSTTEE
T ss_pred             eeccc-------eeec---ccceeeccceEEEEeccccchhhhhhhhhhheeccCcc-cccccccceeeeeecccccCce
Confidence            33332       1222   33467999999999999999876651         222 23556666554 4457899999


Q ss_pred             EecccCCc--hhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          338 AAGDVQDK--KYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       338 a~GD~~~~--~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      ++||++..  .++.+..|..||+.+|.||...+.|++
T Consensus       150 ~iGd~~~~~~~p~~~~~A~~q~~~~A~ni~~~~~G~e  186 (186)
T d1fcda1         150 VIGDASIANPMPKSGYSANSQGKVAAAAVVVLLKGEE  186 (186)
T ss_dssp             ECTTSEECTTCCSSHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             EeccccccCCCCchHhHHHHHHHHHHHHHHHHhcCCC
Confidence            99999843  267899999999999999999998864

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-17  Score=139.34  Aligned_cols=148  Identities=18%  Similarity=0.269  Sum_probs=111.7

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCcchHH--------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFRASKI--------------------------------------  245 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~~~~~--------------------------------------  245 (382)
                      .+++|||+|..|+++|..|.+.+  .+|+++.+.+.++....                                      
T Consensus         5 ~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (213)
T d1m6ia1           5 VPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPSFY   84 (213)
T ss_dssp             EEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGGGS
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCChhhh
Confidence            56899999999999999998876  46999987554421100                                      


Q ss_pred             ---HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh-hhc-ccccc-cCC
Q 016820          246 ---MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK-FVD-GQLDL-HSD  319 (382)
Q Consensus       246 ---~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~-~~~-~~~~~-~~~  319 (382)
                         .....+++.||+++++++|++|+.++..     |.+++   +  .+++||.+|+|+|..|+.. +.. .++.+ +..
T Consensus        85 ~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~-----V~l~d---G--~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~  154 (213)
T d1m6ia1          85 VSAQDLPHIENGGVAVLTGKKVVQLDVRDNM-----VKLND---G--SQITYEKCLIATGGTEPNVELAKTGGLEIDSDF  154 (213)
T ss_dssp             BCTTTTTTSTTCEEEEEETCCEEEEEGGGTE-----EEETT---S--CEEEEEEEEECCCEEEECCTTHHHHTCCBCTTT
T ss_pred             hhhhhHHHHHHCCeEEEeCCEEEEeeccCce-----eeecc---c--eeeccceEEEeeeeecchhhhhhccchhhhhhh
Confidence               0012245678999999999999887752     55543   4  6799999999999876553 333 46666 456


Q ss_pred             CceeeCCCCCcCCCCceEEecccCCc--------hhhHHHHHHhhHHHHHHHHH
Q 016820          320 GYIITKPGTTHTSVPGVFAAGDVQDK--------KYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       320 g~i~vd~~~~~t~~~~vya~GD~~~~--------~~~~~~~a~~~g~~aa~~i~  365 (382)
                      |.+.||+ .++++ |+|||+|||+..        .+..+..|+.||+.+|+||+
T Consensus       155 ~~i~vd~-~l~~~-~~VyA~GD~a~~~~~~~g~~~i~~~~~A~~~gr~aa~ni~  206 (213)
T d1m6ia1         155 GGFRVNA-ELQAR-SNIWVAGDAACFYDIKLGRRRVEHHDHAVVSGRLAGENMT  206 (213)
T ss_dssp             CSEECCT-TCEEE-TTEEECGGGEEEEETTTEEECCCCHHHHHHHHHHHHHHHT
T ss_pred             hhhhhhH-hcCcC-CceEEeeeeeeeccccCCcEEeeEhHHHHHHHHHHHHHhc
Confidence            8999998 67776 999999999742        23467899999999999987

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=2.9e-16  Score=120.54  Aligned_cols=125  Identities=30%  Similarity=0.656  Sum_probs=113.3

Q ss_pred             cCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCC
Q 016820          175 KKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNP  254 (382)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~  254 (382)
                      +.+++||.+.|+++.+++|..++..  .+++|+|+|||+|.+|++-|.+|.+...+|++++|++.+.....+.+++....
T Consensus         2 R~L~ipge~~~~gkGV~yca~cD~~--~~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~   79 (126)
T d1fl2a2           2 RNMNVPGEDQYRTKGVTYCPHCDGP--LFKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKADQVLQDKLRSLK   79 (126)
T ss_dssp             CCCCCTTTTTTBTTTEESCHHHHGG--GGBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCSCHHHHHHHHTCT
T ss_pred             CcCCCCCHHHhcCCCEEEEEecChh--hcCCceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccccccccccccccc
Confidence            4568999999999999999988887  89999999999999999999999999999999999999998888887878888


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                      +|++++++.+.++..++++  ++++++.+..+++..++++|.++++.|.
T Consensus        80 ~I~v~~~~~v~~i~G~~~~--v~~v~l~~~~tge~~~l~vdgvFv~IGl  126 (126)
T d1fl2a2          80 NVDIILNAQTTEVKGDGSK--VVGLEYRDRVSGDIHNIELAGIFVQIGL  126 (126)
T ss_dssp             TEEEESSEEEEEEEESSSS--EEEEEEEETTTCCEEEEECSEEEECSCE
T ss_pred             ceeEEcCcceEEEEccccc--eeeEEEEECCCCCEEEEECCEEEEEeCC
Confidence            9999999999999997653  7889999877788889999999999884

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1.2e-17  Score=143.64  Aligned_cols=70  Identities=19%  Similarity=0.162  Sum_probs=58.1

Q ss_pred             CeEEEeeCCCCChhhhc---ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHH
Q 016820          295 SGLFFAIGHEPATKFVD---GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEH  366 (382)
Q Consensus       295 D~vi~~~G~~p~~~~~~---~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~  366 (382)
                      +.++.++|.+|+++.+.   .++.+++.|++.||+ .++|+.|+|||+||+... +.+++.|+.+|..||++|..
T Consensus       155 ~~~~~~~G~~p~~~~l~l~~~gv~~~~~g~i~vd~-~~~T~~~~v~A~GD~~~g-~~l~~~a~~~G~~aa~~i~~  227 (233)
T d1v59a1         155 SEVTPFVGRRPYIAGLGAEKIGLEVDKRGRLVIDD-QFNSKFPHIKVVGDVTFG-PMLAHKAEEEGIAAVEMLKT  227 (233)
T ss_dssp             EEECCCSCEEECCTTSCTTTTTCCBCTTSCBCCCT-TSBCSSTTEEECGGGSSS-CCCHHHHHHHHHHHHHHHHH
T ss_pred             cccceecccccCCCCcCchhcCeEEcCCCcEEECC-eEecCCCCEEEEcCCccc-HHHHHHHHHHHHHHHHHHcc
Confidence            34455678889887553   477889999999998 788999999999999864 56888999999999998853

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.67  E-value=8.5e-20  Score=157.41  Aligned_cols=167  Identities=17%  Similarity=0.118  Sum_probs=106.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc--
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF--  133 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  133 (382)
                      ...++|+|||||++|+++|..|+++|++|+|+|    ....+||++........   +   .......++....+.+.  
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E----~~~~~GG~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~  116 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLMESGYTVHLTD----TAEKIGGHLNQVAALPG---L---GEWSYHRDYRETQITKLLK  116 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHHTTCEEEEEC----SSSSTTTTHHHHTTSTT---C---GGGGHHHHHHHHHHHHHHT
T ss_pred             cCCceEEEEcccHHHHHHHHHHHHhccceeeEe----eccccCCccccccccce---e---ecccccchhHHHHHHHHhh
Confidence            467899999999999999999999999999999    66678888765433221   1   12223333333333332  


Q ss_pred             -CcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEc
Q 016820          134 -GTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIG  212 (382)
Q Consensus       134 -gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG  212 (382)
                       ++..      .++...+.... .+...+.||+||+|||..+..+.+++.+................  ....++++|+|
T Consensus       117 ~~~~~------~~~~~~~~~~~-~~~~~~~~d~vviAtG~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vvViG  187 (233)
T d1djqa3         117 KNKES------QLALGQKPMTA-DDVLQYGADKVIIATGASECTLWNELKARESEWAENDIKGIYLI--GDAEAPRLIAD  187 (233)
T ss_dssp             TCTTC------EEECSCCCCCH-HHHHTSCCSEEEECCCEECCHHHHHHHHTTHHHHHTTCCEEEEC--GGGTSCCCHHH
T ss_pred             cceee------eeecccccccc-hhhhhhccceeeeccCCCcccccccccccccccchhhhhhhhhc--cccCCceeEec
Confidence             2221      11111111100 01124689999999999876665444332111111111111211  23468899999


Q ss_pred             CCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          213 GGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       213 ~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      +|.+|+|+|.+|.+.+++|+++++++.+.
T Consensus       188 gG~~g~e~A~~l~~~g~~Vtli~r~~~~~  216 (233)
T d1djqa3         188 ATFTGHRVAREIEEANPQIAIPYKRETIA  216 (233)
T ss_dssp             HHHHHHHHHHTTTSSCTTSCCCCCCCCCC
T ss_pred             CchHHHHHHHHHHhcCCceEEEEeccccc
Confidence            99999999999999999999999988753

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.64  E-value=1.6e-15  Score=116.54  Aligned_cols=125  Identities=87%  Similarity=1.395  Sum_probs=111.8

Q ss_pred             CCCCCCcc----ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhcc
Q 016820          177 LQFPGSDA----FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALT  252 (382)
Q Consensus       177 ~~~~g~~~----~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~  252 (382)
                      +.+||..+    |+++.+++|..+++..+++++|+|+|||+|.+|++-|.+|.+...+||+++|++.+.....++++++.
T Consensus         2 l~~pGe~E~~~~f~gkGVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra~~~~~~~l~~   81 (130)
T d1vdca2           2 LSFVGSGEVLGGFWNRGISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRASKIMQQRALS   81 (130)
T ss_dssp             CCCBTCSSSSSCCBTTTEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCSCHHHHHHHHT
T ss_pred             CCCCccccccccccCCcEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEeccccccchhhhhcccc
Confidence            46788776    88899999999998655889999999999999999999999999999999999999998888888889


Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEee
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAI  301 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~  301 (382)
                      ..+|++++++.+.++..++....+..+++++..+++..++++|.++++.
T Consensus        82 ~~nI~v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          82 NPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             CTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             CCceEEEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            9999999999999999987555588899998878888899999999863

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.64  E-value=2.7e-16  Score=135.72  Aligned_cols=78  Identities=19%  Similarity=0.239  Sum_probs=64.9

Q ss_pred             CceEEEecCeEEEeeCCCCChhh-----------hcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHh
Q 016820          287 GQVSDLKVSGLFFAIGHEPATKF-----------VDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAG  355 (382)
Q Consensus       287 ~~~~~~~~D~vi~~~G~~p~~~~-----------~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~  355 (382)
                      .....+.+|.+++++|.+|....           ...++.++++|+|.||+ +++|+.|+|||+|||.+. +.+.+.|+.
T Consensus       145 ~~~e~i~~~~i~ia~G~~p~~~~~~~~~~~~l~l~~~gv~~~~~G~I~vd~-~~~Ts~~~iyA~GDv~~~-~~~~~~A~~  222 (240)
T d1feca1         145 AVLETLDTEYILLATGSWPQHLGIEVPRSQTLQLEKAGVEVAKNGAIKVDA-YSKTNVDNIYAIGDVTDR-VMLTPVAIN  222 (240)
T ss_dssp             CEEEEEEEEEEEECCCEEECCCCSBEESCTTSCGGGGTCCBCTTSCBCCCT-TCBCSSTTEEECGGGGCS-CCCHHHHHH
T ss_pred             cceEEEecceEEEecCCceeEccccccccCCCCccccCeEECCCCcEEcCc-ccCcCCCCEEEEEECCCC-ccchhhHHH
Confidence            33467899999999999986432           12467889999999998 789999999999999874 678889999


Q ss_pred             hHHHHHHHHHH
Q 016820          356 TGCMAALEAEH  366 (382)
Q Consensus       356 ~g~~aa~~i~~  366 (382)
                      +|+.+|+++..
T Consensus       223 eg~~aa~~~~~  233 (240)
T d1feca1         223 EGAAFVDTVFA  233 (240)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHhC
Confidence            99999998853

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=9e-17  Score=136.58  Aligned_cols=166  Identities=19%  Similarity=0.195  Sum_probs=107.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCccc---------------C---CCC---CC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVEN---------------F---PGF---PQ  115 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~---------------~---~~~---~~  115 (382)
                      ++|||+|||||++|+++|..++++|.+|+|||+.     .+||+|....+...               .   .++   ..
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-----~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~   75 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-----ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTIN   75 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-----CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEE
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-----CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcc
Confidence            3689999999999999999999999999999942     57887643221100               0   000   01


Q ss_pred             CCChHHHHH-----------HHHHHHHHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCcc
Q 016820          116 GILGGDLMD-----------RCRNQSLRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDA  184 (382)
Q Consensus       116 ~~~~~~~~~-----------~~~~~~~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~  184 (382)
                      .....++.+           .++..+++.+++++.........  .  ....++..+.++.+++|||+.|..|++|+.+.
T Consensus        76 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~--~--~~~~~~~~~~~~~~iiatG~~p~ip~ip~~~~  151 (217)
T d1gesa1          76 KFNWETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDA--K--TLEVNGETITADHILIATGGRPSHPREPANDN  151 (217)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEET--T--EEEETTEEEEEEEEEECCCEEECCCEEESCTT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeeccccee--e--eecCCCceeeeeeeeeecCccccCCCCCCcCC
Confidence            122333332           23334566789887775333331  1  34446778999999999999999998887653


Q ss_pred             ccC--CCcce----eeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEE
Q 016820          185 FWN--RGISA----CAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVY  232 (382)
Q Consensus       185 ~~~--~~~~~----~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~  232 (382)
                      ...  ..+..    ....+.. .....++|.++|+|.+++|++..+.+.|.+|+
T Consensus       152 l~l~~~gv~~~~~~~i~~d~~-~~t~~~~i~~iG~g~~g~ela~~~~~~G~~v~  204 (217)
T d1gesa1         152 INLEAAGVKTNEKGYIVVDKY-QNTNIEGIYAVGDNTGAVELTPVAVAAGRRLS  204 (217)
T ss_dssp             SCHHHHTCCBCTTSCBCCCTT-SBCSSTTEEECSGGGTSCCCHHHHHHHHHHHH
T ss_pred             cccccccEEEcCCccEeeCch-hccCCCcEEEECCCccHHHHHHHHHHHHHHHH
Confidence            110  01100    1111111 13345789999999999999999998887663

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.55  E-value=3e-15  Score=114.12  Aligned_cols=113  Identities=14%  Similarity=0.208  Sum_probs=85.8

Q ss_pred             CCCCCCCcc--ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---h---HHHH
Q 016820          176 KLQFPGSDA--FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---S---KIMQ  247 (382)
Q Consensus       176 ~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---~---~~~~  247 (382)
                      .|++||.+.  +..+++.++....+.  ...+++++|||+|++|+|+|..|.+.|++||++++.+.+..   .   ....
T Consensus         1 iP~ipG~~~~v~~lrtl~Da~~l~~~--~~~~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~~~~~~~~~~~   78 (121)
T d1d7ya2           1 LPTLQGATMPVHTLRTLEDARRIQAG--LRPQSRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSRAAPATLADFV   78 (121)
T ss_dssp             CGGGTTCSSCEEECCSHHHHHHHHHH--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTSCHHHHHHH
T ss_pred             CccCCCCCCCEEEeCCHHHHHHHHHh--hhcCCeEEEECcchhHHHHHHHhhcccceEEEEeeccccccccCCHHHHHHH
Confidence            367888764  333455555444444  44579999999999999999999999999999999998632   1   2333


Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                      ++.++++||+++++..++++....       +.+++   +  .++++|.+++|+|
T Consensus        79 ~~~l~~~GV~i~~~~~v~~~~~~~-------v~l~d---g--~~i~~D~vi~a~G  121 (121)
T d1d7ya2          79 ARYHAAQGVDLRFERSVTGSVDGV-------VLLDD---G--TRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHTTTCEEEESCCEEEEETTE-------EEETT---S--CEEECSEEEECSC
T ss_pred             HHHHHHCCcEEEeCCEEEEEeCCE-------EEECC---C--CEEECCEEEEeeC
Confidence            567888999999999999876543       55543   3  6799999999997

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.54  E-value=1.6e-14  Score=123.92  Aligned_cols=50  Identities=16%  Similarity=0.215  Sum_probs=43.8

Q ss_pred             cccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          313 QLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       313 ~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ++.++ +|+|.||+ +++|+.|+|||+|||.+. +.+.+.|+.+|+.+|++|.
T Consensus       182 gv~~~-~G~I~vde-~~~T~~~~iyAvGDv~~~-~~l~~~A~~eg~~aa~~i~  231 (238)
T d1aoga1         182 GVMIK-NGGVQVDE-YSRTNVSNIYAIGDVTNR-VMLTPVAINEAAALVDTVF  231 (238)
T ss_dssp             TCCEE-TTEECCCT-TCBCSSTTEEECGGGGTS-CCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEc-CCeEEecC-CeeeccCCEEEEEEecCC-ccchhhHHHHHHHHHHHHc
Confidence            45544 79999999 899999999999999874 5788999999999999985

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.8e-14  Score=110.50  Aligned_cols=121  Identities=41%  Similarity=0.717  Sum_probs=103.0

Q ss_pred             CCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHh---ccCC
Q 016820          178 QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRA---LTNP  254 (382)
Q Consensus       178 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~---l~~~  254 (382)
                      .+||.+.|+++.+++|..++..  ++++|+|+|||+|.+|+|.|.+|.+...+||+++|++.+.....+.+++   ....
T Consensus         2 ~ipge~~~~gkgV~yca~cD~~--~~~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~~~~~~~~~~~~~~~~~   79 (126)
T d1trba2           2 GLPSEEAFKGRGVSACATSDGF--FYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENG   79 (126)
T ss_dssp             CCHHHHHTBTTTEESCHHHHGG--GGTTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCCCCHHHHHHHHHHHHTS
T ss_pred             cCCCHHHhcCCCEEEEEecchH--HhCCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeecccccchhHHHHHHHHhhccc
Confidence            5788888999999999988887  8899999999999999999999999999999999999997766555443   3468


Q ss_pred             CcEEEcCceeEEEEecCCceeeeeEEEEeccCCc-eEEEecCeEEEeeC
Q 016820          255 KIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VSDLKVSGLFFAIG  302 (382)
Q Consensus       255 gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~-~~~~~~D~vi~~~G  302 (382)
                      ++.++.++.+.++..++.+  +++|++.+..+++ ...+++|.++++.|
T Consensus        80 ~i~~~~~~~v~~i~G~~~~--v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          80 NIILHTNRTLEEVTGDQMG--VTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             SEEEECSCEEEEEEECSSS--EEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             ceeEecceEEEEEECCCCc--eEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            8999999999999998653  7889998754443 35799999999876

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.52  E-value=2.2e-16  Score=137.91  Aligned_cols=109  Identities=21%  Similarity=0.247  Sum_probs=67.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcc------------------cCCCC--CCCCC
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVE------------------NFPGF--PQGIL  118 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~~~~--~~~~~  118 (382)
                      ||++|||||++|+.+|..++++|.+|+|||++     ..||+|....+.+                  .+ ++  .....
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-----~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~-G~~~~~~~~   75 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-----RLGGTCVNVGCVPKKIMFNAASVHDILENSRHY-GFDTKFSFN   75 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGG-TCCCCCCCC
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-----CCCCeEEeeCCcchHHHHhhhhcccchhccccc-cccchhhhh
Confidence            79999999999999999999999999999952     5788765432210                  11 11  11233


Q ss_pred             hHHHHHH-----------HHHHHHHcCcEEEEeeEEEEEecCCcEEE------------EECCeEEEcCEEEEccCCCCc
Q 016820          119 GGDLMDR-----------CRNQSLRFGTQIFTETVSKVDFKSRPFKV------------FTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       119 ~~~~~~~-----------~~~~~~~~gi~~~~~~v~~i~~~~~~~~v------------~~~~~~~~~d~lvlA~G~~~~  175 (382)
                      ...+.++           +...+++.|++++.++...++..  .+.+            ..++..+++|++|+|||++|.
T Consensus        76 ~~~~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~--~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~  153 (259)
T d1onfa1          76 LPLLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSEN--RILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPV  153 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC----------------------------CBSSEEECCCCCBC
T ss_pred             hhhHHhhhheeeeccccchhhhcccccceEEeeeccccccc--ccccccceeccccccCccceEEEeeeeEEEecCCCCc
Confidence            3333322           34455677999998854333321  1111            113346999999999999983

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=2.7e-14  Score=108.01  Aligned_cols=92  Identities=17%  Similarity=0.170  Sum_probs=75.3

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      .+++++|||+|++|+|+|..|.++|.+||++++.+.+..     ......+.++++||++++++.++++..++++.    
T Consensus        20 ~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~d~~~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~----   95 (116)
T d1gesa2          20 LPERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSFDPMISETLVEVMNAEGPQLHTNAIPKAVVKNTDGS----   95 (116)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHSCEEECSCCEEEEEECTTSC----
T ss_pred             CCCEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhcchhhHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcE----
Confidence            478999999999999999999999999999999987732     12223467788999999999999999887653    


Q ss_pred             EEEEeccCCceEEEecCeEEEeeC
Q 016820          279 LKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       279 v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                      +.+..   .++.++++|.|++|+|
T Consensus        96 ~~v~~---~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          96 LTLEL---EDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEEEE---TTSCEEEESEEEECSC
T ss_pred             EEEEE---CCCCEEEcCEEEEecC
Confidence            44444   3346799999999998

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.51  E-value=1.3e-13  Score=113.48  Aligned_cols=161  Identities=22%  Similarity=0.329  Sum_probs=120.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC--C---------c----ch-H---HHHHHhccCCCcEEEcCceeEEE
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS--F---------R----AS-K---IMQNRALTNPKIDVIWNSVVLEA  267 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~--~---------~----~~-~---~~~~~~l~~~gv~~~~~~~v~~i  267 (382)
                      .|+|||+|++|++.|.++.+.|.+|++++++..  +         +    .. .   ...+...++.+++.........+
T Consensus         3 DViIIGgGpaGl~AAi~aar~G~~v~iie~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T d1fl2a1           3 DVLIVGSGPAGAAAAIYSARKGIRTGLMGERFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQSASKL   82 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEECSSTTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSCCEEEE
T ss_pred             cEEEECcCHHHHHHHHHHHHcCCeEEEEEEecCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccceeeee
Confidence            589999999999999999999999999986421  0         0    00 1   11123355677888888888887


Q ss_pred             EecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh-hhcccccccCCCceeeCCCCCcCCCCceEEecccCCch
Q 016820          268 YGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK-FVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK  346 (382)
Q Consensus       268 ~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~-~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~  346 (382)
                      .........  .....   .+...+.++.++.++|..++.. .....+.....|.+.+|. ..+|+.|+||++|||....
T Consensus        83 ~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~i~v~~-~~~t~~~gv~a~gd~~~~~  156 (184)
T d1fl2a1          83 IPAAVEGGL--HQIET---ASGAVLKARSIIVATGAKLPNTNWLEGAVERNRMGEIIIDA-KCETNVKGVFAAGDCTTVP  156 (184)
T ss_dssp             ECCSSTTCC--EEEEE---TTSCEEEEEEEEECCCEEEESCGGGTTTSCBCTTSCBCCCT-TCBCSSTTEEECSTTBSCS
T ss_pred             cccccccce--eeeee---ecceeeecccccccccccccccccccccccccccceeccCC-ceeeeCCCEEEEeeecCcc
Confidence            765543211  11122   2335788999999999876544 333456677789999998 7899999999999999876


Q ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820          347 YRQAVTAAGTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       347 ~~~~~~a~~~g~~aa~~i~~~l~~~~~  373 (382)
                      .++...|+.+|..+|..+.++|...+.
T Consensus       157 ~~~~vva~g~G~~aA~~~~~~l~~~~~  183 (184)
T d1fl2a1         157 YKQIIIATGEGAKASLSAFDYLIRTKT  183 (184)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cCCcEEEEECcHHHHHHHHHHHhhccC
Confidence            788899999999999999999987653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.50  E-value=4.1e-14  Score=106.97  Aligned_cols=111  Identities=16%  Similarity=0.218  Sum_probs=80.4

Q ss_pred             CCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHh
Q 016820          176 KLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRA  250 (382)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~  250 (382)
                      +|++||.+..+.     +...-.   ...+++++|||+|.+|+|+|..|.+.|.+||+++|.+++..     .....++.
T Consensus         1 ~P~IpG~e~~~t-----s~~~~~---l~~p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il~~~d~~~~~~~~~~   72 (117)
T d1onfa2           1 FPPVKGIENTIS-----SDEFFN---IKESKKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRILRKFDESVINVLEND   72 (117)
T ss_dssp             CCSCTTGGGCEE-----HHHHTT---CCCCSEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSCTTSCHHHHHHHHHH
T ss_pred             CcccCCHhHcCc-----hhHHhc---cCCCCEEEEECCchHHHHHHHHHHhccccceeeehhccccccccHHHHHHHHHH
Confidence            478888764221     111111   23478999999999999999999999999999999887632     12333466


Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE-ecCeEEEee
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL-KVSGLFFAI  301 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~-~~D~vi~~~  301 (382)
                      ++++||++++++.+++++..++|.    +.+..   .++..+ .||.|+||.
T Consensus        73 l~~~gV~i~~~~~v~~i~~~~~~~----~~v~~---~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          73 MKKNNINIVTFADVVEIKKVSDKN----LSIHL---SDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHTTCEEECSCCEEEEEESSTTC----EEEEE---TTSCEEEEESEEEECC
T ss_pred             HHhCCCEEEECCEEEEEEEcCCCe----EEEEE---CCCCEEEeCCEEEEeC
Confidence            788999999999999999877653    44444   222344 689999984

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.50  E-value=1.7e-14  Score=127.96  Aligned_cols=124  Identities=17%  Similarity=0.107  Sum_probs=93.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC------C----cccCC----------CCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS------D----VENFP----------GFPQG  116 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~------~----~~~~~----------~~~~~  116 (382)
                      ...||+|||||++||.+|+.|++.|.+|+|+|    +...+||.|....      +    ...++          .....
T Consensus         6 ~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~E----k~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~   81 (298)
T d1w4xa1           6 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIE----TAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERY   81 (298)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSS
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEE----cCCCcccccccCCCCCceeccccccccccccccccCCCCCcccc
Confidence            46899999999999999999999999999999    5667888764210      0    00010          01123


Q ss_pred             CChHHHHHHHHHHHHHcCc--EEEEe-eEEEEEe--cCCcEEEEEC-CeEEEcCEEEEccCC--CCcCCCCCCCcc
Q 016820          117 ILGGDLMDRCRNQSLRFGT--QIFTE-TVSKVDF--KSRPFKVFTD-SKSVLADTVIVATGA--VAKKLQFPGSDA  184 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi--~~~~~-~v~~i~~--~~~~~~v~~~-~~~~~~d~lvlA~G~--~~~~~~~~g~~~  184 (382)
                      ...+++.+|++.+++++++  ++..+ +|+++..  +.+.|+|.+. +.++++|+||+|||.  .|..|.+++.+.
T Consensus        82 p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i  157 (298)
T d1w4xa1          82 ASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKIDI  157 (298)
T ss_dssp             CBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSEE
T ss_pred             CccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCccccccc
Confidence            4678999999999999998  47777 6988864  4467999884 456999999999996  677776666653

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.50  E-value=2.9e-15  Score=114.64  Aligned_cols=116  Identities=28%  Similarity=0.293  Sum_probs=86.9

Q ss_pred             CCcCCCCCCCcc-ccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc----hHHHH
Q 016820          173 VAKKLQFPGSDA-FWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA----SKIMQ  247 (382)
Q Consensus       173 ~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~----~~~~~  247 (382)
                      +|+.|++||.+. +..+.+.++......  ...+++++|||+|++|+|+|..|.++|++||++++.+.+..    .....
T Consensus         1 R~r~p~ipG~e~~~t~~~~~d~~~l~~~--~~~~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~~~d~~~~~~~   78 (122)
T d1xhca2           1 RAREPQIKGKEYLLTLRTIFDADRIKES--IENSGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLGLDEELSNMI   78 (122)
T ss_dssp             EECCCCSBTGGGEECCCSHHHHHHHHHH--HHHHSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTTCCHHHHHHH
T ss_pred             CCCCcCCCCccceEccCCHHHHHHHHHH--hhcCCcEEEECCcHHHHHHHHHhhcccceEEEEeccccccCCCHHHHHHH
Confidence            477889999765 333455544433333  33468999999999999999999999999999999988742    12223


Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                      .+.+++.||++++++.+.+++.+.       + +.+   +  ..+++|.+++++|.
T Consensus        79 ~~~l~~~GV~~~~~~~v~~~~~~~-------v-~~~---~--~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          79 KDMLEETGVKFFLNSELLEANEEG-------V-LTN---S--GFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHTTEEEECSCCEEEECSSE-------E-EET---T--EEEECSCEEEECCE
T ss_pred             HHHHHHCCcEEEeCCEEEEEeCCE-------E-EeC---C--CEEECCEEEEEEEe
Confidence            466788899999999999986543       3 222   3  57999999999984

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.49  E-value=1.5e-13  Score=104.27  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...+++++|||+|.+|+|+|..|.++|++|+++.+.+++..     .....++.+++.||++++++++++++.++++   
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~~~ll~~~d~ei~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~---   95 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQ---   95 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCEEEEEEECSSC---
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEeecccCCcccchhHHHHHHHHHhcCceeecCcEEEEEEEeCCE---
Confidence            44579999999999999999999999999999999998732     1222356788899999999999999998875   


Q ss_pred             eeEEEEeccCCceEEEecCeEEEeeC
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                        +.+.....+.+.++.||.|++|+|
T Consensus        96 --v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          96 --VTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             --EEEEEESSSEEEEEEESEEEECSC
T ss_pred             --EEEEEEECCCCEEEECCEEEEeeC
Confidence              444433334457899999999997

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=99.48  E-value=3.3e-13  Score=102.38  Aligned_cols=96  Identities=21%  Similarity=0.207  Sum_probs=78.9

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      +..+.+++|||||+.|+++|..|+++|.+|+++++.                     ........+++.+++++.+++.|
T Consensus        19 ~~~p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~---------------------~~ll~~~d~ei~~~l~~~l~~~G   77 (119)
T d3lada2          19 QNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAM---------------------DKFLPAVDEQVAKEAQKILTKQG   77 (119)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS---------------------SSSSTTSCHHHHHHHHHHHHHTT
T ss_pred             ccCCCeEEEECCChHHHHHHHHHHHcCCceEEEEee---------------------cccCCcccchhHHHHHHHHHhcC
Confidence            346689999999999999999999999999999931                     00112245789999999999999


Q ss_pred             cEEEEe-eEEEEEecCCcEEEEEC--C--eEEEcCEEEEccC
Q 016820          135 TQIFTE-TVSKVDFKSRPFKVFTD--S--KSVLADTVIVATG  171 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~~v~~~--~--~~~~~d~lvlA~G  171 (382)
                      ++++.+ ++++++.+++.+++...  +  .++.+|+|++|+|
T Consensus        78 v~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG  119 (119)
T d3lada2          78 LKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG  119 (119)
T ss_dssp             EEEEETCEEEEEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred             ceeecCcEEEEEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence            999999 79999988887666542  2  3599999999998

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.48  E-value=9e-14  Score=120.29  Aligned_cols=113  Identities=22%  Similarity=0.314  Sum_probs=81.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC--------------------Cc----------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS--------------------DV----------  107 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~--------------------~~----------  107 (382)
                      ++||+|||||++|+.+|+.|+++|++|+|||+.    ..+|+......                    ..          
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~~G~~V~liEk~----~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKG----NKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSI   77 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSS----SSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHH
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCcEEEEeCC----CCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhh
Confidence            589999999999999999999999999999953    33332211000                    00          


Q ss_pred             ------------ccCC--------CCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEE-CCeEEEcC
Q 016820          108 ------------ENFP--------GFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFT-DSKSVLAD  164 (382)
Q Consensus       108 ------------~~~~--------~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~-~~~~~~~d  164 (382)
                                  ..++        .+|......++.+.+.+.+++.|++++.+ +|++|..+++.+. +.+ ++..+++|
T Consensus        78 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~  157 (251)
T d2i0za1          78 FNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETN  157 (251)
T ss_dssp             SCHHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECS
T ss_pred             hhhHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecC
Confidence                        0000        01122345678888889999999999988 6999988777643 444 45679999


Q ss_pred             EEEEccCCCC
Q 016820          165 TVIVATGAVA  174 (382)
Q Consensus       165 ~lvlA~G~~~  174 (382)
                      +||+|+|..+
T Consensus       158 ~vI~AtGg~S  167 (251)
T d2i0za1         158 HVVIAVGGKS  167 (251)
T ss_dssp             CEEECCCCSS
T ss_pred             eEEEccCCcc
Confidence            9999999865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.48  E-value=9.6e-14  Score=106.04  Aligned_cols=98  Identities=13%  Similarity=0.285  Sum_probs=78.5

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...+++++|||+|++|+|+|..|.++|.+|+++.+.+.+..     .....++.++++||++++++.+.+++.++++. +
T Consensus        19 ~~~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~~~~l~~~d~~~~~~~~~~l~~~gI~v~~~~~v~~i~~~~~~~-~   97 (121)
T d1mo9a2          19 YEPGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRTEPLKLIKDNETRAYVLDRMKEQGMEIISGSNVTRIEEDANGR-V   97 (121)
T ss_dssp             SCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTTTCCSHHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSB-E
T ss_pred             hCCCCEEEEECCCHHHHHHHHHHHhcchhheEeeccchhhcccccchhhhhhhhhhccccEEEcCCEEEEEEecCCce-E
Confidence            44579999999999999999999999999999999987632     22334567888999999999999999988774 2


Q ss_pred             eeEEEEeccCCceEEEecCeEEEeeC
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                      ..+....  .+++..+++|.|++|+|
T Consensus        98 ~~~~~~~--~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          98 QAVVAMT--PNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             EEEEEEE--TTEEEEEECSCEEECCC
T ss_pred             EEEEEEe--CCCCEEEEcCEEEEEEC
Confidence            2232222  25567899999999997

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.47  E-value=2.6e-13  Score=103.42  Aligned_cols=97  Identities=24%  Similarity=0.318  Sum_probs=78.0

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG  277 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~  277 (382)
                      ..+++++|||+|++|+|+|..|.++|.+||++.+++++..     .....++.++++||++++++++.+++..+++. ..
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l~~~d~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v   99 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGASMDGEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKN-VV   99 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSSSSCHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTT-EE
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEeccccchhhhhhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCc-EE
Confidence            3578999999999999999999999999999999998732     12233467888999999999999999887763 23


Q ss_pred             eEEEEeccCCceEEEecCeEEEe
Q 016820          278 GLKVKNLVTGQVSDLKVSGLFFA  300 (382)
Q Consensus       278 ~v~~~~~~~~~~~~~~~D~vi~~  300 (382)
                      .+.+.+...++..++++|.|++|
T Consensus       100 ~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2         100 EIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEEEEETTTTEEEEEEESEEEEC
T ss_pred             EEEEEeCCCCCeEEEEeCEEEEC
Confidence            35555545566778999999875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.46  E-value=3.7e-14  Score=126.75  Aligned_cols=114  Identities=17%  Similarity=0.122  Sum_probs=74.2

Q ss_pred             CCcEEEcCceeEEEEecCCcee---eeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc--cccc-----------cc
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKV---LGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD--GQLD-----------LH  317 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~---~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~--~~~~-----------~~  317 (382)
                      .+.+++++++|++|..+.++..   ...+.......++...+++|.|+++++......+..  ....           .+
T Consensus       242 ~~~~i~~~~~V~~i~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~Vi~a~p~~~l~~l~~~~~~~~~~~~~~~~~~~~~  321 (373)
T d1seza1         242 REDELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESFDAVIMTAPLCDVKSMKIAKRGNPFLLNFIPEVYGHN  321 (373)
T ss_dssp             CTTTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEESEEEECSCHHHHHTSEEESSSSBCCCTTSCCCCCTT
T ss_pred             ccceEecCCEEEEEEEeCCcccccccceEEecccCCCCceEEECCEEEECCchHHhhhcccccCCCccchhhhccccccC
Confidence            3677889999999987765321   112344443445567889999999987533211100  0000           01


Q ss_pred             CCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          318 SDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       318 ~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      .++.+..++ .++|+.|+||++||+.+.  ..+..|+.+|+.||..|.++|+.
T Consensus       322 ~~~~~~~~~-~~~t~~pglf~aGd~~~g--~~~~~A~~~G~~aA~~i~~~L~~  371 (373)
T d1seza1         322 YDSVLDAID-KMEKNLPGLFYAGNHRGG--LSVGKALSSGCNAADLVISYLES  371 (373)
T ss_dssp             HHHHHHHHH-HHHHHSTTEEECCSSSSC--SSHHHHHHHHHHHHHHHHHHHSS
T ss_pred             CCcEeeccc-ccCCCCCCEEEEecCCCc--hhHHHHHHHHHHHHHHHHHHHhc
Confidence            112233333 456789999999999864  36889999999999999999964

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.46  E-value=1.5e-13  Score=119.10  Aligned_cols=114  Identities=20%  Similarity=0.239  Sum_probs=82.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc--------eecCCC-------cccCCC---------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ--------LTTTSD-------VENFPG---------  112 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~--------~~~~~~-------~~~~~~---------  112 (382)
                      +.+||+|||||++|+++|+.|+++|++|+|+|+.    ..+|..        +.....       ....+.         
T Consensus         3 ~~~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~----~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~   78 (253)
T d2gqfa1           3 QYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNG----KKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARY   78 (253)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS----SSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC----CCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhh
Confidence            4589999999999999999999999999999953    333321        110000       000000         


Q ss_pred             -----------------------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC----cEEEEECCeEEEcC
Q 016820          113 -----------------------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR----PFKVFTDSKSVLAD  164 (382)
Q Consensus       113 -----------------------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~----~~~v~~~~~~~~~d  164 (382)
                                             ++......++.+.+.+.+++.|++++.+ +|+++...++    .+.+.+++.++++|
T Consensus        79 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~  158 (253)
T d2gqfa1          79 TNWDFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCK  158 (253)
T ss_dssp             CHHHHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEES
T ss_pred             cccchhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeC
Confidence                                   0011234678888899999999999998 6999877654    35677788899999


Q ss_pred             EEEEccCCCC
Q 016820          165 TVIVATGAVA  174 (382)
Q Consensus       165 ~lvlA~G~~~  174 (382)
                      +||+|||..+
T Consensus       159 ~VIiAtGG~S  168 (253)
T d2gqfa1         159 NLIVATGGLS  168 (253)
T ss_dssp             EEEECCCCSS
T ss_pred             EEEEcCCccc
Confidence            9999999865

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.45  E-value=3e-13  Score=102.48  Aligned_cols=93  Identities=22%  Similarity=0.322  Sum_probs=74.8

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCcee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKV  275 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~  275 (382)
                      ...+++++|||+|++|+|+|..|.++|.+||++++.+.+..      ...+ .+.++++||++++++++++++.++++  
T Consensus        19 ~~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~~~d~~~~~~l-~~~l~~~GI~i~~~~~v~~i~~~~~~--   95 (117)
T d1ebda2          19 GEVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILSGFEKQMAAII-KKRLKKKGVEVVTNALAKGAEEREDG--   95 (117)
T ss_dssp             SSCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTTSCHHHHHHH-HHHHHHTTCEEEESEEEEEEEEETTE--
T ss_pred             hhcCCeEEEECCCccceeeeeeecccccEEEEEEecceecccccchhHHHH-HHHHHhcCCEEEcCCEEEEEEEcCCE--
Confidence            34579999999999999999999999999999999998732      2333 46788899999999999999998875  


Q ss_pred             eeeEEEEeccCCceEEEecCeEEEe
Q 016820          276 LGGLKVKNLVTGQVSDLKVSGLFFA  300 (382)
Q Consensus       276 ~~~v~~~~~~~~~~~~~~~D~vi~~  300 (382)
                         +.+.....++..++++|.|+++
T Consensus        96 ---~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          96 ---VTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             ---EEEEEEETTEEEEEEESEEEEC
T ss_pred             ---EEEEEEeCCCEEEEEeEEEEEC
Confidence               3333223355678999999874

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=4.5e-13  Score=101.16  Aligned_cols=95  Identities=20%  Similarity=0.196  Sum_probs=76.8

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+++++|||||++|+++|..|+++|.+|+|+|+.    ..            -+|     ...+++.+++++.+++.|+
T Consensus        19 ~~p~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~----~~------------~l~-----~~d~~~~~~~~~~l~~~GV   77 (116)
T d1gesa2          19 ALPERVAVVGAGYIGVELGGVINGLGAKTHLFEMF----DA------------PLP-----SFDPMISETLVEVMNAEGP   77 (116)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----SS------------SST-----TSCHHHHHHHHHHHHHHSC
T ss_pred             hCCCEEEEECCChhhHHHHHHhhccccEEEEEeec----ch------------hhh-----hcchhhHHHHHHHHHHCCC
Confidence            35678999999999999999999999999999941    00            011     1346899999999999999


Q ss_pred             EEEEe-eEEEEEecCC-cEEEEEC-CeEEEcCEEEEccC
Q 016820          136 QIFTE-TVSKVDFKSR-PFKVFTD-SKSVLADTVIVATG  171 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~-~~~v~~~-~~~~~~d~lvlA~G  171 (382)
                      +++.+ .++.+..+++ .+.+..+ +.++.+|.||+|+|
T Consensus        78 ~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          78 QLHTNAIPKAVVKNTDGSLTLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             EEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             EEEeCCEEEEEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence            99999 6888887654 4666664 46799999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.43  E-value=2.8e-13  Score=103.44  Aligned_cols=96  Identities=19%  Similarity=0.228  Sum_probs=77.2

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...+++++|||+|.+|+|+|..+.++|.+||+++|.+.+..     ......+.+++.||++++++++.+++..+++.  
T Consensus        22 ~~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~l~~~d~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~--   99 (123)
T d1dxla2          22 SEIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVPTMDAEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGV--   99 (123)
T ss_dssp             SSCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSE--
T ss_pred             cccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEccccCchhhhcchhhhhhhhhcccceEEcCCceEEEEEccCeE--
Confidence            44579999999999999999999999999999999998742     12223467888999999999999999887762  


Q ss_pred             eeEEEEeccCCceEEEecCeEEEe
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFA  300 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~  300 (382)
                       .+.+.....+++..+++|.|++|
T Consensus       100 -~v~~~~~~~g~~~~i~~D~vLvA  122 (123)
T d1dxla2         100 -KLTVEPSAGGEQTIIEADVVLVS  122 (123)
T ss_dssp             -EEEEEESSSCCCEEEEESEEECC
T ss_pred             -EEEEEECCCCeEEEEEcCEEEEc
Confidence             24455444556677999999876

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.43  E-value=3.5e-13  Score=102.92  Aligned_cols=98  Identities=13%  Similarity=0.154  Sum_probs=78.0

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...+++++|||+|.+|+|+|..+.++|.+||++.+.+.+..     .....++.++++||+++.++.+.+++.+++|.  
T Consensus        23 ~~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~~~d~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~--  100 (125)
T d1ojta2          23 KEVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQGADRDLVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGV--  100 (125)
T ss_dssp             CCCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHGGGEEEEECSCEEEEEEEETTEE--
T ss_pred             cccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccccchhhHHHHHHHHHHHcCcccccCcEEEEEEEcCCcE--
Confidence            44579999999999999999999999999999999997732     12223467888999999999999999988762  


Q ss_pred             eeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                       .+.++. ..++...+++|.+++|+|+
T Consensus       101 -~v~~~~-~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2         101 -YVTFEG-ANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             -EEEEES-SSCCSSCEEESCEEECCCE
T ss_pred             -EEEEEe-CCCCeEEEEcCEEEEecCC
Confidence             244443 2233457999999999985

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.42  E-value=7.9e-13  Score=119.41  Aligned_cols=119  Identities=22%  Similarity=0.202  Sum_probs=86.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcc---------------------------
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVE---------------------------  108 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~---------------------------  108 (382)
                      .++|+|||||++||++|..|++.|  .+|+|+|    +...+||.|.......                           
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfE----k~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFE----RRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYP   79 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEEC----SSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEE----CCCCCCCcccccCCCCcccCCcccccccccccccccccccccc
Confidence            368999999999999999998876  6999999    4556666553211000                           


Q ss_pred             ----------------cC------CCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECC-------
Q 016820          109 ----------------NF------PGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDS-------  158 (382)
Q Consensus       109 ----------------~~------~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~-------  158 (382)
                                      .+      +..+..+...++.+++..+++.++..+..+ +|++|+.+++.|.|++.+       
T Consensus        80 s~~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~  159 (335)
T d2gv8a1          80 SPLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPI  159 (335)
T ss_dssp             CCCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCE
T ss_pred             cccchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeE
Confidence                            00      011223557889999999999888888888 699999999988776521       


Q ss_pred             eEEEcCEEEEccCC--CCcCCCCC
Q 016820          159 KSVLADTVIVATGA--VAKKLQFP  180 (382)
Q Consensus       159 ~~~~~d~lvlA~G~--~~~~~~~~  180 (382)
                      ....||+||+|+|.  .|+.|.++
T Consensus       160 ~~~~~d~VI~AtG~~s~p~~~~~~  183 (335)
T d2gv8a1         160 SKDIFDAVSICNGHYEVPYTGYLY  183 (335)
T ss_dssp             EEEEESEEEECCCSSSSBCCCBCC
T ss_pred             EEEEeeEEEEcccccccceecccc
Confidence            13679999999998  46665543

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.42  E-value=1.4e-13  Score=106.66  Aligned_cols=108  Identities=18%  Similarity=0.216  Sum_probs=82.8

Q ss_pred             CCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcC
Q 016820          188 RGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~  261 (382)
                      +.+.+.....+.  ...+++++|||+|++|+|+|..|.+.|.+||++++.+.+..      ...+.++.++++||+++++
T Consensus        20 r~~~d~~~l~~~--~~~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~~~~~~~~~~~~~~~~~~GV~i~~~   97 (133)
T d1q1ra2          20 RTLEDAECIRRQ--LIADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLERVTAPPVSAFYEHLHREAGVDIRTG   97 (133)
T ss_dssp             SSHHHHHHHHHT--CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHHHTCEEECS
T ss_pred             CCHHHHHHHHHh--hccCCEEEEECCchHHHHHHHHHHhhCcceeeeeecccccccccchhhhhhhhhcccccccEEEeC
Confidence            344444333333  34579999999999999999999999999999999988632      1234456778899999999


Q ss_pred             ceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeC
Q 016820          262 SVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       262 ~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                      +.+++++...++..+..+.+++   +  ..+++|.|++++|
T Consensus        98 ~~v~~i~~~~~~~~v~~v~~~~---G--~~i~~D~vi~a~G  133 (133)
T d1q1ra2          98 TQVCGFEMSTDQQKVTAVLCED---G--TRLPADLVIAGIG  133 (133)
T ss_dssp             CCEEEEEECTTTCCEEEEEETT---S--CEEECSEEEECCC
T ss_pred             CeEEEEEEeCCCceEEEEECCC---C--CEEECCEEEEeeC
Confidence            9999999876554455555543   3  6799999999997

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.40  E-value=8.3e-13  Score=99.97  Aligned_cols=94  Identities=19%  Similarity=0.213  Sum_probs=73.7

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhc---CCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCce
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKY---GSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKK  274 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~---g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~  274 (382)
                      ..+++++|||+|++|+|+|..|.++   |.+|+++.+.+.+..     .....++.+++.||++++++.+++|+.+++|.
T Consensus        16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il~~~d~~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~   95 (117)
T d1feca2          16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGT   95 (117)
T ss_dssp             SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTEEEEETCCEEEEEECTTSC
T ss_pred             ccCCeEEEECCChHHHHHHHHhHhhcccccccceecccccccccccchhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCE
Confidence            3478999999999999999876654   789999999987632     22333567888999999999999999877652


Q ss_pred             eeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          275 VLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       275 ~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                        ..+.++     ++..++||.|++|+|+
T Consensus        96 --~~v~~~-----~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          96 --RHVVFE-----SGAEADYDVVMLAIGR  117 (117)
T ss_dssp             --EEEEET-----TSCEEEESEEEECSCE
T ss_pred             --EEEEEC-----CCCEEEcCEEEEecCC
Confidence              223333     3367999999999995

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.2e-12  Score=100.18  Aligned_cols=96  Identities=25%  Similarity=0.248  Sum_probs=74.2

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeee
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGG  278 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~  278 (382)
                      .+++++|||+|++|+|+|..|.++|.+||+++|.+.+..     .....++.+++.||++++++++++++.+++|..+  
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~l~~~d~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v--   98 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVLRSFDSMISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEV--   98 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSCHHHHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEE--
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeeccccccchhhHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEE--
Confidence            468999999999999999999999999999999987742     1223346678899999999999999998876222  


Q ss_pred             EEEEeccCC----ceEEEecCeEEEeeC
Q 016820          279 LKVKNLVTG----QVSDLKVSGLFFAIG  302 (382)
Q Consensus       279 v~~~~~~~~----~~~~~~~D~vi~~~G  302 (382)
                       .+.....+    ....+++|.|++|+|
T Consensus        99 -~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          99 -SMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             -EEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             -EEEEccCCcCcCccccccCCEEEEEeC
Confidence             22211112    124578999999997

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.38  E-value=3.2e-12  Score=97.39  Aligned_cols=94  Identities=28%  Similarity=0.194  Sum_probs=76.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||||+.|+++|..|+++|.+|+++|+..    .            .+    .....+++.+.+++.+++.|++
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~----~------------~l----~~~~d~~~~~~~~~~l~~~gv~   88 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILD----R------------PL----GVYLDKEFTDVLTEEMEANNIT   88 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS----S------------TT----TTTCCHHHHHHHHHHHHTTTEE
T ss_pred             CCCEEEEECChHHHHHHHHHhhccceEEEEEEecC----c------------cc----ccccchhhHHHHHHHhhcCCeE
Confidence            35689999999999999999999999999999410    0            01    1223477899999999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEcc
Q 016820          137 IFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVAT  170 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~  170 (382)
                      ++.+ ++++++.+++...+.++++++++|.||+|.
T Consensus        89 ~~~~~~v~~i~~~~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          89 IATGETVERYEGDGRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             EEESCCEEEEECSSBCCEEEESSCEEECSEEEECS
T ss_pred             EEeCceEEEEEcCCCEEEEEeCCCEEECCEEEEEC
Confidence            9999 699998766545567788899999999984

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=6e-13  Score=109.34  Aligned_cols=108  Identities=31%  Similarity=0.422  Sum_probs=82.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIF  138 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~  138 (382)
                      +||+||||||+|++||..++++|++|+|||+      ..|+++.......+++..+. .....+...++..+++++++..
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~------~~gg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~   74 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGE------RFGGQILDTVDIENYISVPK-TEGQKLAGALKVHVDEYDVDVI   74 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECS------STTGGGGGCCEECCBTTBSS-EEHHHHHHHHHHHHHTSCEEEE
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEE------ecCCcccccccceeccccch-hhhHHHHHHHHHHhhheeceee
Confidence            7999999999999999999999999999995      35777776666666666543 5567888888888888888887


Q ss_pred             Ee-eEEEEEecCC---cEE-EEECCeEEEcCEEEEccCCC
Q 016820          139 TE-TVSKVDFKSR---PFK-VFTDSKSVLADTVIVATGAV  173 (382)
Q Consensus       139 ~~-~v~~i~~~~~---~~~-v~~~~~~~~~d~lvlA~G~~  173 (382)
                      .. .+..+.....   ... ...++.++.++.+++++|..
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  114 (184)
T d1fl2a1          75 DSQSASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAK  114 (184)
T ss_dssp             CSCCEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEE
T ss_pred             ccceeeeecccccccceeeeeeecceeeeccccccccccc
Confidence            66 4656654322   222 22355679999999999974

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=99.37  E-value=3.1e-12  Score=97.03  Aligned_cols=91  Identities=21%  Similarity=0.198  Sum_probs=72.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||||++|+++|..|++.|.+|+|+|+.    .                ........+++.+++++.+++.||++
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~----~----------------~~l~~~~~~~~~~~~~~~l~~~GV~i   89 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQ----P----------------RLMSRAAPATLADFVARYHAAQGVDL   89 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS----S----------------STTTTTSCHHHHHHHHHHHHTTTCEE
T ss_pred             CCeEEEECcchhHHHHHHHhhcccceEEEEeec----c----------------ccccccCCHHHHHHHHHHHHHCCcEE
Confidence            478999999999999999999999999999941    0                01112345788999999999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATG  171 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G  171 (382)
                      +.+ +++.+..  +.+ ...++.++.+|.||+|+|
T Consensus        90 ~~~~~v~~~~~--~~v-~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          90 RFERSVTGSVD--GVV-LLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             EESCCEEEEET--TEE-EETTSCEEECSEEEECSC
T ss_pred             EeCCEEEEEeC--CEE-EECCCCEEECCEEEEeeC
Confidence            999 6877653  333 334667899999999998

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=99.37  E-value=1.7e-12  Score=99.01  Aligned_cols=96  Identities=20%  Similarity=0.132  Sum_probs=77.9

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+.+++|||||+.|+++|..++++|.+|+++|+.                    +.. .....+++.+.+++.+++.|+
T Consensus        24 ~~p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~--------------------~~i-l~~~d~~~~~~l~~~l~~~gv   82 (125)
T d1ojta2          24 EVPGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM--------------------DGL-MQGADRDLVKVWQKQNEYRFD   82 (125)
T ss_dssp             CCCSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS--------------------SSS-STTSCHHHHHHHHHHHGGGEE
T ss_pred             ccCCeEEEECCCHHHHHHHHHhhcCCCEEEEEEee--------------------ccc-cccchhhHHHHHHHHHHHcCc
Confidence            45689999999999999999999999999999931                    011 122467899999999999999


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE--CC---eEEEcCEEEEccCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT--DS---KSVLADTVIVATGA  172 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~--~~---~~~~~d~lvlA~G~  172 (382)
                      +++.+ ++.++..+++.+.+..  .+   .++++|.|++|+|+
T Consensus        83 ~~~~~~~v~~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~GR  125 (125)
T d1ojta2          83 NIMVNTKTVAVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGR  125 (125)
T ss_dssp             EEECSCEEEEEEEETTEEEEEEESSSCCSSCEEESCEEECCCE
T ss_pred             ccccCcEEEEEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecCC
Confidence            99999 7999988877655543  21   35999999999994

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.36  E-value=4.3e-13  Score=102.36  Aligned_cols=90  Identities=20%  Similarity=0.204  Sum_probs=71.3

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc------hHHHHHHhccCCCcEEEcCceeEEEEecCCceee
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVL  276 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~  276 (382)
                      ...++++|||+|++|+|+|..|.+.|++||++++.+.+..      .....++.+++.||++++++.+++++.++.   +
T Consensus        28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~~~~d~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~---~  104 (123)
T d1nhpa2          28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLGVYLDKEFTDVLTEEMEANNITIATGETVERYEGDGR---V  104 (123)
T ss_dssp             TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTTTCCHHHHHHHHHHHHTTTEEEEESCCEEEEECSSB---C
T ss_pred             cCCCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccccccchhhHHHHHHHhhcCCeEEEeCceEEEEEcCCC---E
Confidence            3478999999999999999999999999999999887632      123345678889999999999999987653   2


Q ss_pred             eeEEEEeccCCceEEEecCeEEEee
Q 016820          277 GGLKVKNLVTGQVSDLKVSGLFFAI  301 (382)
Q Consensus       277 ~~v~~~~~~~~~~~~~~~D~vi~~~  301 (382)
                      . ..+.+   +  .+++||.+++|.
T Consensus       105 ~-~v~~d---g--~~i~~D~vi~aI  123 (123)
T d1nhpa2         105 Q-KVVTD---K--NAYDADLVVVAV  123 (123)
T ss_dssp             C-EEEES---S--CEEECSEEEECS
T ss_pred             E-EEEeC---C--CEEECCEEEEEC
Confidence            2 22332   3  579999999874

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=3.7e-12  Score=98.39  Aligned_cols=95  Identities=19%  Similarity=0.238  Sum_probs=74.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++++|||||++|+++|..|++.|.+|+++|+.    .                ........+++.+.+++.+++.|++
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~----~----------------~~l~~~~~~~~~~~~~~~~~~~GV~   93 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTA----A----------------RVLERVTAPPVSAFYEHLHREAGVD   93 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS----S----------------STTTTTSCHHHHHHHHHHHHHHTCE
T ss_pred             cCCEEEEECCchHHHHHHHHHHhhCcceeeeeec----c----------------cccccccchhhhhhhhhcccccccE
Confidence            3578999999999999999999999999999941    0                0001234577888999999999999


Q ss_pred             EEEe-eEEEEEecCC--cE-EEEE-CCeEEEcCEEEEccC
Q 016820          137 IFTE-TVSKVDFKSR--PF-KVFT-DSKSVLADTVIVATG  171 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~~-~v~~-~~~~~~~d~lvlA~G  171 (382)
                      ++.+ +++.++...+  .+ .+.+ ++.++.+|.||+|+|
T Consensus        94 i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          94 IRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             EECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             EEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            9999 6998876543  22 2444 445799999999998

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=2.7e-12  Score=97.56  Aligned_cols=100  Identities=17%  Similarity=0.168  Sum_probs=75.4

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCc-ee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDK-KV  275 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g-~~  275 (382)
                      ...+++++|||+|++|+|+|..|.++|++||++.+.+.++.     ++.+ .+.++++||++++++++++++...++ ..
T Consensus        17 ~~~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~~~l~~~D~~~~~~l-~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~   95 (122)
T d1h6va2          17 PYCPGKTLVVGASYVALECAGFLAGIGLDVTVMVRSILLRGFDQDMANKI-GEHMEEHGIKFIRQFVPTKIEQIEAGTPG   95 (122)
T ss_dssp             SSCCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSTTSCHHHHHHH-HHHHHHTTEEEEESCEEEEEEEEECSTTC
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhhcCCeEEEEEechhhccCCHHHHHHH-HHHHHHCCCEEEECCEEEEEEEecCCCcc
Confidence            34578999999999999999999999999999998654432     3333 46788899999999999999764432 11


Q ss_pred             eeeEEEEeccCCceEEEecCeEEEeeC
Q 016820          276 LGGLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       276 ~~~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                      ...+.+.....++...++||.|++|+|
T Consensus        96 ~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          96 RLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            223455543344456678999999987

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.36  E-value=9.3e-13  Score=99.30  Aligned_cols=92  Identities=16%  Similarity=0.198  Sum_probs=70.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||||++|+++|..|+++|++|+|+|+.    ..            -+|     ...+++.+.+++.+++.|++
T Consensus        20 ~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~----~~------------il~-----~~d~~~~~~l~~~l~~~gV~   78 (115)
T d1lvla2          20 LPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR----ER------------ILP-----TYDSELTAPVAESLKKLGIA   78 (115)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS----SS------------SST-----TSCHHHHHHHHHHHHHHTCE
T ss_pred             CCCeEEEECCCHHHHHHHHHHhhcccceEEEeee----cc------------ccc-----cccchhHHHHHHHHHhhcce
Confidence            4578999999999999999999999999999941    00            011     12467899999999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE-C--CeEEEcCEEEEccC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT-D--SKSVLADTVIVATG  171 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~-~--~~~~~~d~lvlA~G  171 (382)
                      ++.+ +|++++.  +...+.. +  +.++.+|.||+|+|
T Consensus        79 i~~~~~V~~i~~--~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          79 LHLGHSVEGYEN--GCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             EETTCEEEEEET--TEEEEECSSSCCCEECCSCEEECCC
T ss_pred             EEcCcEEEEEcC--CeEEEEEcCCCeEEEEcCEEEEecC
Confidence            9999 6888863  2222222 2  24699999999998

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.36  E-value=3.8e-12  Score=96.22  Aligned_cols=93  Identities=17%  Similarity=0.236  Sum_probs=74.1

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+++++|||||++|+++|..|+++|.+|+|+|+.        .++        +     ....+++.+++.+.+++.|+
T Consensus        20 ~~p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~--------~~i--------l-----~~~d~~~~~~l~~~l~~~GI   78 (117)
T d1ebda2          20 EVPKSLVVIGGGYIGIELGTAYANFGTKVTILEGA--------GEI--------L-----SGFEKQMAAIIKKRLKKKGV   78 (117)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS--------SSS--------S-----TTSCHHHHHHHHHHHHHTTC
T ss_pred             hcCCeEEEECCCccceeeeeeecccccEEEEEEec--------cee--------c-----ccccchhHHHHHHHHHhcCC
Confidence            35689999999999999999999999999999941        000        1     12346799999999999999


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE--CC--eEEEcCEEEEc
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT--DS--KSVLADTVIVA  169 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lvlA  169 (382)
                      +++.+ ++++++..++.+.+..  ++  .++.+|.|++.
T Consensus        79 ~i~~~~~v~~i~~~~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          79 EVVTNALAKGAEEREDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             EEEESEEEEEEEEETTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             EEEcCCEEEEEEEcCCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            99999 6999988877665543  33  35899999974

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.35  E-value=4.4e-12  Score=95.86  Aligned_cols=95  Identities=16%  Similarity=0.029  Sum_probs=74.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc---CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA---ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~---g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      .+++++|||||++|+++|..++++   |.+|+++|+.                     ........+++.+++++.+++.
T Consensus        17 ~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~---------------------~~il~~~d~~~~~~~~~~l~~~   75 (117)
T d1feca2          17 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRG---------------------DMILRGFDSELRKQLTEQLRAN   75 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESS---------------------SSSSTTSCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCChHHHHHHHHhHhhcccccccceeccc---------------------ccccccccchhhHHHHHHHhhC
Confidence            467999999999999999877665   8899999941                     0001123468999999999999


Q ss_pred             CcEEEEe-eEEEEEecCC-cEEEEE-CCeEEEcCEEEEccCC
Q 016820          134 GTQIFTE-TVSKVDFKSR-PFKVFT-DSKSVLADTVIVATGA  172 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~-~~~v~~-~~~~~~~d~lvlA~G~  172 (382)
                      ||+++.+ .+++|..+++ ...+.. ++.++.+|.||+|+|+
T Consensus        76 GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~GR  117 (117)
T d1feca2          76 GINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGR  117 (117)
T ss_dssp             TEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSCE
T ss_pred             cEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecCC
Confidence            9999999 6999987644 334444 5567999999999994

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.34  E-value=2.3e-12  Score=113.24  Aligned_cols=57  Identities=25%  Similarity=0.330  Sum_probs=51.0

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+++.|++++.+ +|.+|+.+++.|.|.++++++.+|.||+|+|.+.
T Consensus       148 ~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g~i~a~~VViAaG~~s  205 (281)
T d2gf3a1         148 FSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSYTADKLIVSMGAWN  205 (281)
T ss_dssp             EHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEEEEEEEEECCGGGH
T ss_pred             cccccccccccccccccccccCCcEEEEEEEECCEEEEEECCcEEEcCEEEECCCCcc
Confidence            34678888889999999999988 6999999999999999999999999999999853

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.1e-12  Score=97.15  Aligned_cols=94  Identities=18%  Similarity=0.162  Sum_probs=74.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+++++|||||+.|+++|..|+++|.+|+++++.               +  .+    .....+++.+++.+.+++.||+
T Consensus        21 ~pk~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~---------------~--~~----l~~~d~~~~~~~~~~l~~~Gv~   79 (125)
T d3grsa2          21 LPGRSVIVGAGYIAVEMAGILSALGSKTSLMIRH---------------D--KV----LRSFDSMISTNCTEELENAGVE   79 (125)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS---------------S--SS----CTTSCHHHHHHHHHHHHHTTCE
T ss_pred             cCCEEEEEcCCccHHHHHHHHhcCCcEEEEEeec---------------c--cc----ccchhhHHHHHHHHHHHHCCCE
Confidence            4579999999999999999999999999999941               0  00    1113577999999999999999


Q ss_pred             EEEe-eEEEEEecCCcEEEEE----CC------eEEEcCEEEEccC
Q 016820          137 IFTE-TVSKVDFKSRPFKVFT----DS------KSVLADTVIVATG  171 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~~v~~----~~------~~~~~d~lvlA~G  171 (382)
                      ++.+ +++.|...++.+.+..    .+      ..+.+|.|++|+|
T Consensus        80 i~~~~~v~~i~~~~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          80 VLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             EETTEEEEEEEEETTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             EEeCCEEEEEEEcCCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            9999 6999988777655432    11      2478999999998

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.34  E-value=3.3e-12  Score=96.46  Aligned_cols=93  Identities=16%  Similarity=0.152  Sum_probs=71.7

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcC---CEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCc
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYG---SKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDK  273 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g---~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g  273 (382)
                      ...+++++|||+|++|+|+|..|.+++   .+||++++.+.+..     .....++.++++||++++++++++++...+|
T Consensus        17 ~~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL~~~d~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~   96 (117)
T d1aoga2          17 PEPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMILRGFDHTLREELTKQLTANGIQILTKENPAKVELNADG   96 (117)
T ss_dssp             SSCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSSTTSCHHHHHHHHHHHHHTTCEEEESCCEEEEEECTTS
T ss_pred             hhcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhhcccchHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCC
Confidence            345789999999999999998877664   57999999988742     2233356788899999999999999987665


Q ss_pred             eeeeeEEEEeccCCceEEEecCeEEEee
Q 016820          274 KVLGGLKVKNLVTGQVSDLKVSGLFFAI  301 (382)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~~~~D~vi~~~  301 (382)
                      .    +.+..   .++.+++||.|+||.
T Consensus        97 ~----~~v~~---~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          97 S----KSVTF---ESGKKMDFDLVMMAI  117 (117)
T ss_dssp             C----EEEEE---TTSCEEEESEEEECS
T ss_pred             e----EEEEE---CCCcEEEeCEEEEeC
Confidence            3    33333   333679999999974

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.34  E-value=2e-12  Score=113.18  Aligned_cols=58  Identities=22%  Similarity=0.249  Sum_probs=51.5

Q ss_pred             CChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          117 ILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       117 ~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      +....+...+.+.+++.|++++.+ +|+.|+.+++.+.|.++++++.+|.||+|+|.+.
T Consensus       148 i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i~a~~vV~AaG~~s  206 (276)
T d1ryia1         148 VEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDVWANHVVVASGVWS  206 (276)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTEEEEEEEEEECCGGGT
T ss_pred             eecccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCeEEEcCEEEECCCccH
Confidence            456778888888999999999988 6999999888999999999999999999999864

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=99.33  E-value=1.5e-11  Score=102.88  Aligned_cols=115  Identities=15%  Similarity=0.069  Sum_probs=75.4

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCC------CCCCCChHHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPG------FPQGILGGDLMDRCRNQSL  131 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~  131 (382)
                      .|||+|||||+||++||..+++.|+++.||+++.   ...|..+..+......++      .+.+.....+...+++.+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~---~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~   78 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL---DAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLE   78 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG---GGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHH
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEecc---chhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHh
Confidence            4899999999999999999999999999999521   122322221111111110      0112222333333444443


Q ss_pred             -HcCcEEEEeeEEEEEecCCcE-EEEEC-CeEEEcCEEEEccCCCCc
Q 016820          132 -RFGTQIFTETVSKVDFKSRPF-KVFTD-SKSVLADTVIVATGAVAK  175 (382)
Q Consensus       132 -~~gi~~~~~~v~~i~~~~~~~-~v~~~-~~~~~~d~lvlA~G~~~~  175 (382)
                       ..++.++.++|.++..+++.+ .|.++ +.++.++.||||||..-+
T Consensus        79 ~~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          79 GLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             TCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSS
T ss_pred             hhcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCccee
Confidence             448999999999988777765 36665 457999999999998643

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=2.5e-12  Score=96.88  Aligned_cols=92  Identities=20%  Similarity=0.223  Sum_probs=72.5

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----hHHHHHHhccCCCcEEEcCceeEEEEecCCceeee
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLG  277 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~  277 (382)
                      ..+++++|||+|++|+|+|..|.+.|++||++++.+.+..     .....++.++++||++++++++++++...      
T Consensus        19 ~~p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il~~~d~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~------   92 (115)
T d1lvla2          19 ALPQHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILPTYDSELTAPVAESLKKLGIALHLGHSVEGYENGC------   92 (115)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSSTTSCHHHHHHHHHHHHHHTCEEETTCEEEEEETTE------
T ss_pred             cCCCeEEEECCCHHHHHHHHHHhhcccceEEEeeeccccccccchhHHHHHHHHHhhcceEEcCcEEEEEcCCe------
Confidence            3478999999999999999999999999999999988732     12233567888999999999999986322      


Q ss_pred             eEEEEeccCCceEEEecCeEEEeeC
Q 016820          278 GLKVKNLVTGQVSDLKVSGLFFAIG  302 (382)
Q Consensus       278 ~v~~~~~~~~~~~~~~~D~vi~~~G  302 (382)
                       ..... ..+++..+++|.|++|+|
T Consensus        93 -~~~~~-~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          93 -LLAND-GKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             -EEEEC-SSSCCCEECCSCEEECCC
T ss_pred             -EEEEE-cCCCeEEEEcCEEEEecC
Confidence             22222 234456799999999998

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=9.4e-12  Score=96.73  Aligned_cols=94  Identities=21%  Similarity=0.199  Sum_probs=76.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHH----cCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAAR----AELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~----~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      .++++|||||++|+++|..|++    .|.+|+++++.    .                ..-....++++.+++.+.+++.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~----~----------------~~l~~~~~~~~~~~~~~~l~~~   96 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPE----K----------------GNMGKILPEYLSNWTMEKVRRE   96 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSS----S----------------STTTTTSCHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccc----c----------------cCCcccCCHHHHHHHHHHHHhC
Confidence            4689999999999999999964    59999999941    0                0001224568889999999999


Q ss_pred             CcEEEEe-eEEEEEecCCcEEEEECC-eEEEcCEEEEccC
Q 016820          134 GTQIFTE-TVSKVDFKSRPFKVFTDS-KSVLADTVIVATG  171 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~~~~~v~~~~-~~~~~d~lvlA~G  171 (382)
                      |++++.+ .|..++.+++.+.+.+++ .++.+|.||+|+|
T Consensus        97 GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          97 GVKVMPNAIVQSVGVSSGKLLIKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             TCEEECSCCEEEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred             CcEEEeCCEEEEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence            9999999 699999888888887755 5699999999999

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=9.6e-12  Score=94.49  Aligned_cols=93  Identities=14%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+++++|||||+.|+++|..|+++|.+|+|+|+.                     ..+.....+++.+++++.+++.||
T Consensus        21 ~~p~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~---------------------~~~l~~~d~ei~~~l~~~l~~~GV   79 (122)
T d1v59a2          21 EIPKRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ---------------------PQIGASMDGEVAKATQKFLKKQGL   79 (122)
T ss_dssp             SCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS---------------------SSSSSSSCHHHHHHHHHHHHHTTC
T ss_pred             cCCCeEEEECCCchHHHHHHHHHhhCcceeEEEec---------------------cccchhhhhhhHHHHHHHHHhccc
Confidence            35689999999999999999999999999999931                     000112357899999999999999


Q ss_pred             EEEEe-eEEEEEecCCcEE--EEEC------CeEEEcCEEEEc
Q 016820          136 QIFTE-TVSKVDFKSRPFK--VFTD------SKSVLADTVIVA  169 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~--v~~~------~~~~~~d~lvlA  169 (382)
                      +++.+ ++++++..++...  +...      ..++.+|.|++|
T Consensus        80 ~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          80 DFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             EEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             eEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            99999 6999987655433  3221      135999999987

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=5.1e-14  Score=120.86  Aligned_cols=150  Identities=21%  Similarity=0.151  Sum_probs=96.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC-------CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE-------LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQS  130 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g-------~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (382)
                      +++|+|||||||||+||+.|+++|       ++|+|+|    +...+||.+...       -.|......++.+......
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E----~~~~~GG~~~~g-------i~p~~~~~~~~~~~~~~~~   70 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLE----MLPTPWGLVRSG-------VAPDHPKIKSISKQFEKTA   70 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEE----SSSSCSTHHHHT-------SCTTCTGGGGGHHHHHHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEe----cCCCCCCeeeec-------cCcccccchhhhhhhhhhh
Confidence            479999999999999999999997       5899999    667889977531       1133445566777777778


Q ss_pred             HHcCcEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccCCC-cceee-ec--cCCC----CC
Q 016820          131 LRFGTQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWNRG-ISACA-VC--DGAA----PI  202 (382)
Q Consensus       131 ~~~gi~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~~~-~~~~~-~~--~~~~----~~  202 (382)
                      ...+++++.+..  +..+   ..+  +.-...||.+++|||..+..+..+|........ ..... ..  ....    ..
T Consensus        71 ~~~g~~~~~~~~--v~~~---~~~--~~~~~~~~~v~~atGa~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (239)
T d1lqta2          71 EDPRFRFFGNVV--VGEH---VQP--GELSERYDAVIYAVGAQSRGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWI  143 (239)
T ss_dssp             TSTTEEEEESCC--BTTT---BCH--HHHHHHSSEEEECCCCCEECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHH
T ss_pred             ccCCceEEEEEE--eccc---cch--hhhhccccceeeecCCCccccccccccccccccchhhhhhhhccccccccceee
Confidence            888999988742  1110   000  111246999999999987776666655411110 00000 00  0000    01


Q ss_pred             CCCCcEEEEcCCchHHHHHHHHh
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLT  225 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~  225 (382)
                      ..+++++|+|++..+++++..+.
T Consensus       144 ~~g~~~vv~g~g~~a~d~a~~~v  166 (239)
T d1lqta2         144 KRGPTGVIGTNKKDAQDTVDTLI  166 (239)
T ss_dssp             HHCSCSCTTHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHH
Confidence            12567888888999999887654

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=1.1e-11  Score=96.38  Aligned_cols=92  Identities=20%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             CCCcEEEEcCCchHHHHHHHHh----hcCCEEEEEEeCCCCcc---h---HHHHHHhccCCCcEEEcCceeEEEEecCCc
Q 016820          204 RDKPLAVIGGGDSAMEEANFLT----KYGSKVYIIHRRDSFRA---S---KIMQNRALTNPKIDVIWNSVVLEAYGEGDK  273 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~----~~g~~v~~~~~~~~~~~---~---~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g  273 (382)
                      ..++++|||+|.+|+|+|..|.    +.|.+|+++++.+.+..   .   .....+.+++.||++++++.+++++.++++
T Consensus        36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~~~~~~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~  115 (137)
T d1m6ia2          36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKILPEYLSNWTMEKVRREGVKVMPNAIVQSVGVSSGK  115 (137)
T ss_dssp             HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTTSCHHHHHHHHHHHHTTTCEEECSCCEEEEEEETTE
T ss_pred             cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCcccCCHHHHHHHHHHHHhCCcEEEeCCEEEEEEecCCE
Confidence            4689999999999999999985    35899999999887632   1   223356788999999999999999988764


Q ss_pred             eeeeeEEEEeccCCceEEEecCeEEEeeCC
Q 016820          274 KVLGGLKVKNLVTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       274 ~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~  303 (382)
                           +.+..   .++..+++|.|++|+|.
T Consensus       116 -----~~v~l---~~G~~i~aD~Vi~A~Gv  137 (137)
T d1m6ia2         116 -----LLIKL---KDGRKVETDHIVAAVGL  137 (137)
T ss_dssp             -----EEEEE---TTSCEEEESEEEECCCE
T ss_pred             -----EEEEE---CCCCEEECCEEEEeecC
Confidence                 44444   33468999999999983

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.28  E-value=1e-11  Score=94.48  Aligned_cols=89  Identities=22%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++++|||||++|+++|..|+++|.+|+|+|+.               +  .+.    . ..+++.+.+.+.+++.|+++
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~---------------~--~l~----~-~d~~~~~~~~~~l~~~GV~~   89 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRG---------------A--MFL----G-LDEELSNMIKDMLEETGVKF   89 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSS---------------S--CCT----T-CCHHHHHHHHHHHHHTTEEE
T ss_pred             CCcEEEECCcHHHHHHHHHhhcccceEEEEecc---------------c--ccc----C-CCHHHHHHHHHHHHHCCcEE
Confidence            478999999999999999999999999999941               0  011    1 24788889999999999999


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGA  172 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~  172 (382)
                      +.+ ++.+++.+  .  +.++++.+.+|.+|+|+|.
T Consensus        90 ~~~~~v~~~~~~--~--v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          90 FLNSELLEANEE--G--VLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             ECSCCEEEECSS--E--EEETTEEEECSCEEEECCE
T ss_pred             EeCCEEEEEeCC--E--EEeCCCEEECCEEEEEEEe
Confidence            999 68887643  2  3457888999999999994

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=2.6e-11  Score=92.01  Aligned_cols=93  Identities=16%  Similarity=0.162  Sum_probs=71.2

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      .+.+++|||||+.|+++|..|+++|.+|+|+++.                 .-+     ....+++.+++.+.+++.||+
T Consensus        19 ~P~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~-----------------~~l-----~~~D~~~~~~l~~~l~~~Gv~   76 (122)
T d1h6va2          19 CPGKTLVVGASYVALECAGFLAGIGLDVTVMVRS-----------------ILL-----RGFDQDMANKIGEHMEEHGIK   76 (122)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-----------------SSS-----TTSCHHHHHHHHHHHHHTTEE
T ss_pred             CCCeEEEECCCccHHHHHHHHhhcCCeEEEEEec-----------------hhh-----ccCCHHHHHHHHHHHHHCCCE
Confidence            5679999999999999999999999999999931                 001     124578999999999999999


Q ss_pred             EEEe-eEEEEEecCC----cEEEEE--CC----eEEEcCEEEEccC
Q 016820          137 IFTE-TVSKVDFKSR----PFKVFT--DS----KSVLADTVIVATG  171 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~----~~~v~~--~~----~~~~~d~lvlA~G  171 (382)
                      ++.+ +++.+...++    .+.+..  .+    ....+|.|++|+|
T Consensus        77 i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          77 FIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             EEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             EEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            9999 6887764322    233332  11    2367999999998

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.26  E-value=1.8e-11  Score=93.12  Aligned_cols=94  Identities=16%  Similarity=0.147  Sum_probs=74.5

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ..+++++|||||+.|+++|..++++|.+|+++|+.                     ..+.....+++.+.+.+.+++.||
T Consensus        23 ~~p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~---------------------~~~l~~~d~~~~~~l~~~l~~~GI   81 (123)
T d1dxla2          23 EIPKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFA---------------------SEIVPTMDAEIRKQFQRSLEKQGM   81 (123)
T ss_dssp             SCCSEEEESCCSHHHHHHHHHHHHHTCEEEEECSS---------------------SSSSTTSCHHHHHHHHHHHHHSSC
T ss_pred             ccCCeEEEEccchHHHHHHHHHHhcCCeEEEEEEc---------------------cccCchhhhcchhhhhhhhhcccc
Confidence            45689999999999999999999999999999941                     001112347899999999999999


Q ss_pred             EEEEe-eEEEEEecCCcEEEE--E--CC--eEEEcCEEEEcc
Q 016820          136 QIFTE-TVSKVDFKSRPFKVF--T--DS--KSVLADTVIVAT  170 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~--~--~~--~~~~~d~lvlA~  170 (382)
                      +++.+ ++.+++..++.+++.  .  ++  .++.+|+|++|.
T Consensus        82 ~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          82 KFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             CEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             eEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            99999 699998877766544  2  11  348999999883

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.25  E-value=3.1e-11  Score=90.80  Aligned_cols=92  Identities=17%  Similarity=0.160  Sum_probs=73.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      +++|+|||||+.|+++|..|+++|.+|+|+|+.                     ........+++.+++++.+++.|+++
T Consensus        22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~---------------------~~il~~~d~~~~~~~~~~l~~~gV~i   80 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG---------------------NRILRKFDESVINVLENDMKKNNINI   80 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS---------------------SSSCTTSCHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCchHHHHHHHHHHhccccceeeehh---------------------ccccccccHHHHHHHHHHHHhCCCEE
Confidence            578999999999999999999999999999941                     00011235789999999999999999


Q ss_pred             EEe-eEEEEEecC-CcEEEEECC-eEE-EcCEEEEcc
Q 016820          138 FTE-TVSKVDFKS-RPFKVFTDS-KSV-LADTVIVAT  170 (382)
Q Consensus       138 ~~~-~v~~i~~~~-~~~~v~~~~-~~~-~~d~lvlA~  170 (382)
                      +.+ .+++++..+ +.+.+.+++ ..+ .+|.||+|.
T Consensus        81 ~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          81 VTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             ECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             EECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            999 699998654 456676655 445 579999984

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.25  E-value=1.9e-10  Score=103.33  Aligned_cols=116  Identities=17%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh----------------hcccc
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF----------------VDGQL  314 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~----------------~~~~~  314 (382)
                      .++.|++++.++.+.++..+++.  +.++.+.+..+++...+.++.||+|||--.....                +..+.
T Consensus       168 ~~~~gv~i~~~~~~~~li~~~~~--v~g~~~~~~~~g~~~~i~Ak~VvlATGG~~~~~~~t~~~~~~tGdg~~~~~~~G~  245 (336)
T d2bs2a2         168 CLKLGVSIQDRKEAIALIHQDGK--CYGAVVRDLVTGDIIAYVAKGTLIATGGYGRIYKNTTNAVVCEGTGTAIALETGI  245 (336)
T ss_dssp             HHHHTCEEECSEEEEEEEEETTE--EEEEEEEETTTCCEEEEECSEEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTSS
T ss_pred             HHhccccccceeeeeeccccccc--ccceeEEeccCCcEEEEecCeEEEeccccccccccccccccccchhhhhhhhhhh
Confidence            34579999999999888877653  5666776666677778899999999975431100                11232


Q ss_pred             -cccCCCceeeCCCCCcCCCCceEEecccCCc--------hhhHHHHHHhhHHHHHHHHHHHHH
Q 016820          315 -DLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--------KYRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       315 -~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--------~~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                       .+.+-+++..|+ +.+|+.|++|++|++...        .......++..+..++++...+..
T Consensus       246 ~~l~~~~~iq~~~-~~~t~~~gl~a~G~~~~~~~~~~~~~~~~~~~e~~~~~~~~ge~~~~~~~  308 (336)
T d2bs2a2         246 AQLGNMGGIRTDY-RGEAKLKGLFSAGEAACWDMHGFNRLGGNSVSEAVVAGMIVGEYFAEHCA  308 (336)
T ss_dssp             SCEECCCEEECCT-TSBCSSBTEEECGGGEECCSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccceeech-hhcccCCcceeccccccccccccccchhhccchhhhhcchhHHHHHhhcC
Confidence             345678999999 889999999999997531        122455666667777777666544

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=99.25  E-value=4.1e-11  Score=91.00  Aligned_cols=93  Identities=13%  Similarity=0.196  Sum_probs=72.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      .++|+|||||+.|+++|..|+++|.+|+++++.                    +.. .....+++.+.+++.+++.++++
T Consensus        22 ~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~--------------------~~~-l~~~d~~~~~~~~~~l~~~gI~v   80 (121)
T d1mo9a2          22 GSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT--------------------EPL-KLIKDNETRAYVLDRMKEQGMEI   80 (121)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS--------------------CTT-TTCCSHHHHHHHHHHHHHTTCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcchhheEeecc--------------------chh-hcccccchhhhhhhhhhccccEE
Confidence            478999999999999999999999999999931                    011 12244678899999999999999


Q ss_pred             EEe-eEEEEEecCCcEE--E--EE-C-CeEEEcCEEEEccC
Q 016820          138 FTE-TVSKVDFKSRPFK--V--FT-D-SKSVLADTVIVATG  171 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~--v--~~-~-~~~~~~d~lvlA~G  171 (382)
                      +.+ ++..++.+++...  +  .. + +.++.+|.||+|+|
T Consensus        81 ~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G  121 (121)
T d1mo9a2          81 ISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG  121 (121)
T ss_dssp             ESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred             EcCCEEEEEEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence            999 7889987654321  1  11 2 34599999999998

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.25  E-value=8.8e-13  Score=117.15  Aligned_cols=113  Identities=12%  Similarity=0.100  Sum_probs=70.0

Q ss_pred             HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-------ccc-cc
Q 016820          245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-------GQL-DL  316 (382)
Q Consensus       245 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-------~~~-~~  316 (382)
                      .+.+++.++.|++++++++|++|+.++++.   .+++.+  .++..++.+|.||+|+|......++.       ..+ .+
T Consensus       223 ~~~~~l~~~~g~~i~~~~~V~~I~~~~~~~---~v~~~~--~~~~~~~~ad~VV~a~p~~~~~~Ll~~~~~~~~~~~~~~  297 (347)
T d2ivda1         223 VLIDALAASLGDAAHVGARVEGLAREDGGW---RLIIEE--HGRRAELSVAQVVLAAPAHATAKLLRPLDDALAALVAGI  297 (347)
T ss_dssp             HHHHHHHHHHGGGEESSEEEEEEECC--CC---EEEEEE--TTEEEEEECSEEEECSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHhhcccccCCEEEEEEEeCCeE---EEEEEc--CCeEEEEECCEEEECCCHHHHHHhccCCCHHHHHHhhcc
Confidence            333445555689999999999999887651   133333  35557899999999998543333322       000 11


Q ss_pred             cCCCc---eeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          317 HSDGY---IITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       317 ~~~g~---i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ...|.   +...+ ...++.|++|++||.....  .+..|+++|+.+|+.|.
T Consensus       298 ~~~~~~~~~~~~~-~~~~~~p~~~~~G~~~~g~--~~~~~~~~g~~~a~~~~  346 (347)
T d2ivda1         298 YNLGHLERVAAID-AALQRLPGLHLIGNAYKGV--GLNDCIRNAAQLADALV  346 (347)
T ss_dssp             CBTTHHHHHHHHH-HHHHTSTTEEECSTTTSCC--SHHHHHHHHHHHHHHHC
T ss_pred             eecCcccceeccc-ccccCCCCEEEecccccCC--CHHHHHHHHHHHHHHhh
Confidence            11221   11112 2346799999999987642  46678999999998874

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=99.22  E-value=1.6e-11  Score=97.88  Aligned_cols=129  Identities=16%  Similarity=0.091  Sum_probs=86.1

Q ss_pred             ccCCCCcCC-CCCCCccccCCCcceeeeccCCCCCCCCCcEEEE--cCCchHHHHHHHHhhcCCEEEEEEeCCCCcc---
Q 016820          169 ATGAVAKKL-QFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVI--GGGDSAMEEANFLTKYGSKVYIIHRRDSFRA---  242 (382)
Q Consensus       169 A~G~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv--G~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~---  242 (382)
                      |||+.|..| ++||.+.-..+.+...+.+...  ...++.++|+  |+|.+|+|+|..|.++|++||++.+.+.+..   
T Consensus         4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~~--~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~~   81 (156)
T d1djqa2           4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDGK--KKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMHF   81 (156)
T ss_dssp             SSCCCTTTSSCCTTCCTTSTTEECHHHHHHTC--SCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHHH
T ss_pred             CCCCCCCCCCCCCCccCCCCEEECHHHHhcCc--cccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCccccccc
Confidence            899998877 7999875211222122223333  3345666666  9999999999999999999999999887632   


Q ss_pred             --hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          243 --SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       243 --~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                        ......+.|.+.||++++++.+.+++.+.       +.+.....     ...+.+...+|..|+.....
T Consensus        82 ~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~~-------v~l~~~~~-----~~~~~v~~~~g~~~~~~~~~  140 (156)
T d1djqa2          82 TLEYPNMMRRLHELHVEELGDHFCSRIEPGR-------MEIYNIWG-----DGSKRTYRGPGVSPRDANTS  140 (156)
T ss_dssp             TTCHHHHHHHHHHTTCEEEETEEEEEEETTE-------EEEEETTC-----SCSCCCCCCTTSCSSCCCCC
T ss_pred             hhHHHHHHHHHhhccceEEeccEEEEecCcc-------eEEEeeec-----cccceeeeeeEEEecccCCc
Confidence              22223456777899999999999998765       55554211     23345555555555555443

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.21  E-value=1.3e-10  Score=87.48  Aligned_cols=93  Identities=20%  Similarity=0.114  Sum_probs=72.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcC---CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAE---LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRF  133 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g---~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (382)
                      .+++++|||||+.|+++|..+..++   .+|+|+|+.               +      .......+++.+++++.+++.
T Consensus        19 ~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~---------------~------~iL~~~d~~~~~~l~~~l~~~   77 (117)
T d1aoga2          19 PPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRG---------------E------MILRGFDHTLREELTKQLTAN   77 (117)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESS---------------S------SSSTTSCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEecc---------------c------hhhcccchHHHHHHHHHHHhc
Confidence            4579999999999999998887775   569999931               0      001123578999999999999


Q ss_pred             CcEEEEe-eEEEEEecC-CcEEEEECC-eEEEcCEEEEcc
Q 016820          134 GTQIFTE-TVSKVDFKS-RPFKVFTDS-KSVLADTVIVAT  170 (382)
Q Consensus       134 gi~~~~~-~v~~i~~~~-~~~~v~~~~-~~~~~d~lvlA~  170 (382)
                      |++++.+ ++++++... +.+.+.+++ .++.+|.||+|.
T Consensus        78 GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          78 GIQILTKENPAKVELNADGSKSVTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             TCEEEESCCEEEEEECTTSCEEEEETTSCEEEESEEEECS
T ss_pred             CcEEEcCCEEEEEEEcCCCeEEEEECCCcEEEeCEEEEeC
Confidence            9999999 699998654 456666654 569999999984

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.21  E-value=1.1e-11  Score=102.54  Aligned_cols=157  Identities=18%  Similarity=0.275  Sum_probs=107.1

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCcch-----------H---HHHHHhccCCCcEEEcCceeEEEE
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFRAS-----------K---IMQNRALTNPKIDVIWNSVVLEAY  268 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~~~-----------~---~~~~~~l~~~gv~~~~~~~v~~i~  268 (382)
                      .+++|+|||+|++|+++|.+|.++|. +|+++++.+.+...           .   ..........+.++.....+..  
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--   80 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELMKDLGVKIICGKSLSE--   80 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHHTSCTTTSCHHHHHHHHHHHHTTTCEEEESCCBST--
T ss_pred             CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhhhccccccccccccchhhhhhccceeEEeeEEecc--
Confidence            47899999999999999999999997 59999999877321           0   0111223344555554444311  


Q ss_pred             ecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-----ccccccCCCceeeCCCCCcCCCCceEEecccC
Q 016820          269 GEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-----GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQ  343 (382)
Q Consensus       269 ~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-----~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~  343 (382)
                       ..       ...     .......+|.+++++|.........     ........+....+...++++.|.+|+.||+.
T Consensus        81 -~~-------~~~-----~~~~~~~~~~~~ia~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~vi  147 (196)
T d1gtea4          81 -NE-------ITL-----NTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDLPEVDPETMQTSEPWVFAGGDIV  147 (196)
T ss_dssp             -TS-------BCH-----HHHHHTTCCEEEECCCCCEECCCHHHHHHTTTSCBCTTSSBCCCTTTCBCSSTTEEECSGGG
T ss_pred             -ce-------eee-----ehhhccccceeeEEeccccCCccccccccccccccccccceeccccccCCCccccccccccc
Confidence             00       000     1112345788899988654332221     23344556777888878999999999999998


Q ss_pred             CchhhHHHHHHhhHHHHHHHHHHHHHHccCccc
Q 016820          344 DKKYRQAVTAAGTGCMAALEAEHYLQEIGSQED  376 (382)
Q Consensus       344 ~~~~~~~~~a~~~g~~aa~~i~~~l~~~~~~~~  376 (382)
                      +. ..++..|+..|+.+|..+.+++....+...
T Consensus       148 gg-~~~av~a~~~g~~~a~~v~r~~~~~~~~~~  179 (196)
T d1gtea4         148 GM-ANTTVESVNDGKQASWYIHKYIQAQYGASV  179 (196)
T ss_dssp             CS-CCCHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CC-cchHHHHHHHHhhhehhHhhccHhhCCCCc
Confidence            64 467788999999999999999987655443

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=99.19  E-value=5e-12  Score=103.35  Aligned_cols=146  Identities=17%  Similarity=0.109  Sum_probs=83.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ++|||||||++|+++|..|++++  .+|+|||+..............        ..  ...... ...........++.
T Consensus         3 krivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~--------~~--~~~~~~-~~~~~~~~~~~~v~   71 (186)
T d1fcda1           3 RKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVI--------GG--DRKLES-IKHGYDGLRAHGIQ   71 (186)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHH--------HT--SSCGGG-GEECSHHHHTTTEE
T ss_pred             CcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccccccccc--------ch--hhhhhh-hhhhhhhcccccee
Confidence            58999999999999999999987  5789999521100000000000        00  000000 01111223455788


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCccccC------CCcceeeeccCCCCCCCCCcEEE
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSDAFWN------RGISACAVCDGAAPIFRDKPLAV  210 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~~~~~------~~~~~~~~~~~~~~~~~~~~v~V  210 (382)
                      +..+++..++...+.+ ...++.++.||+||+|+|.+|+.+.+++....+.      ...................++.+
T Consensus        72 ~~~~~~~~~~~~~~~~-~~~~~~~i~~D~li~atG~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~  150 (186)
T d1fcda1          72 VVHDSATGIDPDKKLV-KTAGGAEFGYDRCVVAPGIELIYDKIEQRAGKIAQIAGLTNDAGWCPVDIKTFESSIHKGIHV  150 (186)
T ss_dssp             EECCCEEECCTTTTEE-EETTSCEEECSEEEECCCEEECCTTSTEEECHHHHHHTCCCTTSSEEBCSSSCBBSSSTTEEE
T ss_pred             EeeeeeEeeeecccee-ecccceeeccceEEEEeccccchhhhhhhhhhheeccCcccccccccceeeeeecccccCceE
Confidence            8777777777655533 3335677999999999999998887776543110      01111112222211234567888


Q ss_pred             EcCCch
Q 016820          211 IGGGDS  216 (382)
Q Consensus       211 vG~G~~  216 (382)
                      +|.+..
T Consensus       151 iGd~~~  156 (186)
T d1fcda1         151 IGDASI  156 (186)
T ss_dssp             CTTSEE
T ss_pred             eccccc
Confidence            886553

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=4.1e-11  Score=100.88  Aligned_cols=141  Identities=19%  Similarity=0.319  Sum_probs=97.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------chH------H--------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------ASK------I--------------------------  245 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------~~~------~--------------------------  245 (382)
                      .++|||+|+.|+..|..+.+.|.+|+++++.. +.         ...      .                          
T Consensus         4 DvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~~-~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~   82 (217)
T d1gesa1           4 DYIAIGGGSGGIASINRAAMYGQKCALIEAKE-LGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFNWETL   82 (217)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCEEEEESSC-TTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEECHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC-cCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCcccccHHHH
Confidence            58999999999999999999999999998753 20         000      0                          


Q ss_pred             -------------HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--
Q 016820          246 -------------MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--  310 (382)
Q Consensus       246 -------------~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--  310 (382)
                                   ..+..+++.||++........   ..       ....    .++..+.++.++++||.+|..+..  
T Consensus        83 ~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~---~~-------~~~~----~~~~~~~~~~~iiatG~~p~ip~ip~  148 (217)
T d1gesa1          83 IASRTAYIDRIHTSYENVLGKNNVDVIKGFARFV---DA-------KTLE----VNGETITADHILIATGGRPSHPREPA  148 (217)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEE---ET-------TEEE----ETTEEEEEEEEEECCCEEECCCEEES
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccc---ee-------eeec----CCCceeeeeeeeeecCccccCCCCCC
Confidence                         001223445665544322111   01       0111    123678999999999988764322  


Q ss_pred             -------cccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHH
Q 016820          311 -------DGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEA  364 (382)
Q Consensus       311 -------~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i  364 (382)
                             ..++..+++|++.+|+ .++|+.|+||++||+... ...+..+...|+.++.++
T Consensus       149 ~~~l~l~~~gv~~~~~~~i~~d~-~~~t~~~~i~~iG~g~~g-~ela~~~~~~G~~v~~~~  207 (217)
T d1gesa1         149 NDNINLEAAGVKTNEKGYIVVDK-YQNTNIEGIYAVGDNTGA-VELTPVAVAAGRRLSERL  207 (217)
T ss_dssp             CTTSCHHHHTCCBCTTSCBCCCT-TSBCSSTTEEECSGGGTS-CCCHHHHHHHHHHHHHHH
T ss_pred             cCCcccccccEEEcCCccEeeCc-hhccCCCcEEEECCCccH-HHHHHHHHHHHHHHHHHH
Confidence                   1356788899999998 888999999999999864 456778888888888643

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=3.3e-11  Score=109.09  Aligned_cols=118  Identities=15%  Similarity=0.058  Sum_probs=73.3

Q ss_pred             HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhh--------c-cccc
Q 016820          245 IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFV--------D-GQLD  315 (382)
Q Consensus       245 ~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~--------~-~~~~  315 (382)
                      .+.+.++++.|.++++++++.+|..++++     +.+..   .++..+.+|.||++++..-.....        . ..+.
T Consensus       211 ~~~~~l~~~~g~~i~~~~~v~~I~~~~~~-----v~v~~---~~g~~~~ad~vI~a~p~~~~~~~~~~p~l~~~~~~~~~  282 (383)
T d2v5za1         211 QVSERIMDLLGDRVKLERPVIYIDQTREN-----VLVET---LNHEMYEAKYVISAIPPTLGMKIHFNPPLPMMRNQMIT  282 (383)
T ss_dssp             HHHHHHHHHHGGGEEESCCEEEEECSSSS-----EEEEE---TTSCEEEESEEEECSCGGGGGGSEEESCCCHHHHHHTT
T ss_pred             HHHHHHHHHcCCeEEecCcceEEEecCCe-----EEEEE---CCCCEEECCEEEECCCHHHHhhCccCCCCCHHHHHHHH
Confidence            33445566678999999999999988775     55554   344678999999998643211110        0 0010


Q ss_pred             -ccCCCce-eeCCCCCcCCCCceEEecccCCc-hhhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          316 -LHSDGYI-ITKPGTTHTSVPGVFAAGDVQDK-KYRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       316 -~~~~g~i-~vd~~~~~t~~~~vya~GD~~~~-~~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                       ....+.. .... .......+|+.+|+.... .......|+.+|..+|..|...+...
T Consensus       283 ~~~~~~~~~~~~~-~~~~~~~~~~~~G~~~~~~~~g~~~ga~~~g~~~a~~i~~~~~~~  340 (383)
T d2v5za1         283 RVFPPGILTQYGR-VLRQPVDRIYFAGTETATHWSGYMEGAVEAGERAAREILHAMGKI  340 (383)
T ss_dssp             SCCCTTHHHHHGG-GTTCCBTTEEECSGGGCSSSTTSHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HhccCCccchhhh-hhcCCcCceEeccccccccCCcchHHHHHHHHHHHHHHHHHhccC
Confidence             1111211 1222 334456779999976432 24456678999999999998887543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.15  E-value=1.6e-10  Score=102.40  Aligned_cols=57  Identities=16%  Similarity=0.119  Sum_probs=49.3

Q ss_pred             ChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEECCeEEEcCEEEEccCCCC
Q 016820          118 LGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       118 ~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ....+...+.+.+++.|++++.+ +|+++..+++.+. |.++.+++++|+||+|+|.+.
T Consensus       146 ~p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         146 SAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFWG  204 (305)
T ss_dssp             CHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEEEECSEEEECCGGGH
T ss_pred             chhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEeccceeEECCEEEEecchhH
Confidence            45678888888889999999998 6999999888754 888999999999999999853

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.9e-09  Score=95.32  Aligned_cols=94  Identities=19%  Similarity=0.259  Sum_probs=69.3

Q ss_pred             HhccCCCcEEEcCceeEEEEecCCc-----eeeeeEEEEeccCCceEEEecCeEEEeeCCCCCh-------hh-------
Q 016820          249 RALTNPKIDVIWNSVVLEAYGEGDK-----KVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT-------KF-------  309 (382)
Q Consensus       249 ~~l~~~gv~~~~~~~v~~i~~~~~g-----~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~-------~~-------  309 (382)
                      +.+++.+++++.++.+.++..+++.     ..+.++...+...+....+.++.|++|||--...       ..       
T Consensus       146 ~~~~~~~v~~~~~~~~~~Li~~~~~~~~~~~rv~Gv~~~~~~~g~~~~~~ak~VilAtGG~~~~~~~~t~~~~~TGDG~~  225 (305)
T d1chua2         146 KALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATGGASKVYQYTTNPDISSGDGIA  225 (305)
T ss_dssp             HHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCCCCGGGSSSBSCGGGCSCHHHH
T ss_pred             HHHhccCcceeceeEEEEEEEEcCcccccCceEEEEEEEeCCCCcEEEEeecceEEeeeccccceeccCCCCceecccEe
Confidence            4566789999999999888766432     2366777766555666778999999999854321       10       


Q ss_pred             --hcccccccCCCceeeCCCCCcCCCCceEEecccC
Q 016820          310 --VDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQ  343 (382)
Q Consensus       310 --~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~  343 (382)
                        +..+..+..-+++++|+ +.+|+.|++|++|+++
T Consensus       226 mA~~aGa~l~~m~~iq~~~-~g~t~~~g~~a~G~~~  260 (305)
T d1chua2         226 MAWRAGCRVANCGGVMVDD-HGRTDVEGLYAIGEVS  260 (305)
T ss_dssp             HHHHTTCCEECSCEEECCT-TCBCSSBTEEECGGGE
T ss_pred             eccccceeeEecceeEECC-cccCCCCCceecccEE
Confidence              11456677788999999 8899999999999974

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.8e-12  Score=105.44  Aligned_cols=123  Identities=15%  Similarity=0.177  Sum_probs=74.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEecccCCCCCCCcceecCCCc--------------ccCCCCC--CCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFEGWMANDIAPGGQLTTTSDV--------------ENFPGFP--QGIL  118 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~~~~~~~~~gg~~~~~~~~--------------~~~~~~~--~~~~  118 (382)
                      ..+++||||||++|+++|..|++++.  +|++|++....   +..+...+...              ..+....  ....
T Consensus         3 ~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~---py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (213)
T d1m6ia1           3 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL---PYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQ   79 (213)
T ss_dssp             SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC---CBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC---CccccccceecccccCchhhhhhhhhhcccchhhhhcC
Confidence            45789999999999999999999875  59999852111   00000000000              0000000  0000


Q ss_pred             hHH--HHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCCCCCc
Q 016820          119 GGD--LMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQFPGSD  183 (382)
Q Consensus       119 ~~~--~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~~g~~  183 (382)
                      ..+  ........+++.||+++.+ +|+.|+.+++.+++. ++.++.||+||+|+|+.|..+.+++..
T Consensus        80 ~~~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~-dG~~i~~d~lViAtG~~~~~~~l~~~~  146 (213)
T d1m6ia1          80 PPSFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLN-DGSQITYEKCLIATGGTEPNVELAKTG  146 (213)
T ss_dssp             CGGGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEET-TSCEEEEEEEEECCCEEEECCTTHHHH
T ss_pred             ChhhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeec-cceeeccceEEEeeeeecchhhhhhcc
Confidence            000  0011122345679999999 699999888765543 566799999999999987766665543

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=6.2e-09  Score=93.06  Aligned_cols=122  Identities=18%  Similarity=0.191  Sum_probs=75.2

Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCCh-------hhh---------ccccc
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT-------KFV---------DGQLD  315 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~-------~~~---------~~~~~  315 (382)
                      ++.+++++.+..+.++..+.++. +..+......+++...+.++.+|+|||.-...       ...         ..+..
T Consensus       154 ~~~~v~~~~~~~~~~l~~~~~~~-~~g~~~~~~~~g~~~~~~a~~vIlAtGG~~~ly~~ttn~~~~tGdG~~~a~~aGa~  232 (330)
T d1neka2         154 LKNHTTIFSEWYALDLVKNQDGA-VVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVP  232 (330)
T ss_dssp             HHTTCEEECSEEEEEEEECTTSC-EEEEEEEETTTCCEEEEEESCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHTTTCC
T ss_pred             HhcCCeEEEEEEEEEeeeecccc-ceeeeeEEccCCcEEEEeccEEEEcCCCccccccCcCCCCccEeHHHHHHHHcCCC
Confidence            34678888888888877655543 33333334455666778999999999854321       100         01111


Q ss_pred             c-cCCCcee---------eCCCCCcCCCCceEEecccCCc--------hhhHHHHHHhhHHHHHHHHHHHHHHccCc
Q 016820          316 L-HSDGYII---------TKPGTTHTSVPGVFAAGDVQDK--------KYRQAVTAAGTGCMAALEAEHYLQEIGSQ  374 (382)
Q Consensus       316 ~-~~~g~i~---------vd~~~~~t~~~~vya~GD~~~~--------~~~~~~~a~~~g~~aa~~i~~~l~~~~~~  374 (382)
                      + |-.++++         ++..-...-.|++|++|+|+..        .......++..|+.+++.+.+.+...+..
T Consensus       233 l~d~~~~~~~~~~~~~~~~~~~g~~~v~~gl~a~Ge~a~~g~HganrL~~nsl~~~~v~g~~ag~~~~~~~~~~~~~  309 (330)
T d1neka2         233 VQDMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGAL  309 (330)
T ss_dssp             EESECCBEEBCTTCEEEEECSSSCEEEEEEEEECSSSEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccccccccccccccceeecccCCCceecccccccCcccccccccccccccccHHHHHHHHHHHHHHHHHHhhccCCc
Confidence            1 2122222         2221222347899999998641        23467788889999999999998865543

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=1.3e-08  Score=90.13  Aligned_cols=122  Identities=21%  Similarity=0.302  Sum_probs=83.6

Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC-----Ch--hhh---------c
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP-----AT--KFV---------D  311 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p-----~~--~~~---------~  311 (382)
                      ++..+..+|+++.++.+.++..+++.  +.++...+..+++...+.++.||+|||--.     ++  ...         .
T Consensus       142 ~~~~~~~~v~i~~~~~v~~Ll~d~g~--v~Gvv~~~~~~g~~~~~~AkaVILATGG~g~~y~~ttn~~~~tGDG~~mA~~  219 (311)
T d1kf6a2         142 QTSLQFPQIQRFDEHFVLDILVDDGH--VRGLVAMNMMEGTLVQIRANAVVMATGGAGRVYRYNTNGGIVTGDGMGMALS  219 (311)
T ss_dssp             HHHTTCTTEEEEETEEEEEEEEETTE--EEEEEEEETTTTEEEEEECSCEEECCCCCGGGSSSBSSCTTCSCHHHHHHHT
T ss_pred             HHHHccCcceeEeeeEeeeeEecCCc--ceeEEEEEcCCCcEEEEECCEEEEcCCCccccccccCCCCCcCcHHHHHHHh
Confidence            45667789999999999999887742  666766665566667788999999998532     11  111         1


Q ss_pred             ccccccCCCceeeCCCCCcCCCCceEEecccCCc--------hhhHHHHHHhhHHHHHHHHHHHHHHcc
Q 016820          312 GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK--------KYRQAVTAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       312 ~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~--------~~~~~~~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      .+..+.+-.+++.++ +..+..+++|++|++..-        ...........++.+++.+.++.....
T Consensus       220 aGa~l~dme~iq~~p-~~~~~~~~~~~~~~~~~~g~~g~n~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  287 (311)
T d1kf6a2         220 HGVPLRDMGGIETDQ-NCETRIKGLFAVGECSSVGLHGANRLGSNSLAELVVFGRLAGEQATERAATAG  287 (311)
T ss_dssp             TTCCEESCCEEECCT-TSBCSSBTEEECGGGEECSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             cccceeecccccccc-cchhcccCCCcCcceeeeeeEeccccccccccceeecChHHHHHHHHhhcccc
Confidence            344454557899998 677888999999997631        122344555567777777777665443

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=1e-10  Score=93.62  Aligned_cols=117  Identities=19%  Similarity=0.293  Sum_probs=81.8

Q ss_pred             CcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCE-----------------------
Q 016820          174 AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSK-----------------------  230 (382)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~-----------------------  230 (382)
                      |+.|++||.+.  ....+..+++.+.  ...+++|+|||+|++|+|+|..+.+.|.+                       
T Consensus         2 Pr~p~IpG~d~--~~V~~a~d~L~~~--~~~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~   77 (162)
T d1ps9a2           2 PRTPPIDGIDH--PKVLSYLDVLRDK--APVGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGG   77 (162)
T ss_dssp             ECCCCCBTTTS--TTEEEHHHHHTSC--CCCCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGG
T ss_pred             CCCCCCCCCCC--CCeEEHHHHhhCc--cccCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcc
Confidence            78899999875  1222333455555  56789999999999999999999998753                       


Q ss_pred             --------------EEEEEeCCC-C-----cchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceE
Q 016820          231 --------------VYIIHRRDS-F-----RASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVS  290 (382)
Q Consensus       231 --------------v~~~~~~~~-~-----~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~  290 (382)
                                    ++.+..... +     ..........++..||+++.+..+.+++.++       +.+..  .+++.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~g-------v~~~~--~g~e~  148 (162)
T d1ps9a2          78 LSPQGMQIPRSPRQIVMLQRKASKPGQGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDG-------LHVVI--NGETQ  148 (162)
T ss_dssp             BCTTCCCCCCCSSEEEEECSSCSCTTTTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTE-------EEEEE--TTEEE
T ss_pred             cccccceeccccceEEEEEeccchhccccchhhhHHHHHHHhhCCeEEEeeeEEEEEcCCC-------CEEec--CCeEE
Confidence                          333322221 1     1123333456777899999999999997554       45543  35667


Q ss_pred             EEecCeEEEeeCC
Q 016820          291 DLKVSGLFFAIGH  303 (382)
Q Consensus       291 ~~~~D~vi~~~G~  303 (382)
                      .++||.|++|+|.
T Consensus       149 ~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         149 VLAVDNVVICAGQ  161 (162)
T ss_dssp             EECCSEEEECCCE
T ss_pred             EEECCEEEECCCC
Confidence            8999999999995

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.07  E-value=8.6e-10  Score=97.75  Aligned_cols=34  Identities=38%  Similarity=0.409  Sum_probs=31.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..+||+|||||++|+++|++|++.|++|+||||.
T Consensus        15 e~~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~   48 (308)
T d1y0pa2          15 DTVDVVVVGSGGAGFSAAISATDSGAKVILIEKE   48 (308)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence            4589999999999999999999999999999963

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.06  E-value=8.2e-11  Score=97.53  Aligned_cols=110  Identities=15%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCccc-CCCCCCCCChHHHHHHHHHHHHHcCc
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVEN-FPGFPQGILGGDLMDRCRNQSLRFGT  135 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~gi  135 (382)
                      ++|+|||||++|+++|..|+++  +.+|+++|+.    .....  .. ..... +...  ....+++.....+.+++.|+
T Consensus         1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~----~~~~~--~~-~~~~~~l~~~--~~~~~~~~~~~~~~l~~~gi   71 (198)
T d1nhpa1           1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKG----DFISF--LS-AGMQLYLEGK--VKDVNSVRYMTGEKMESRGV   71 (198)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESS----SSSSB--CG-GGHHHHHTTS--SCCGGGSBSCCHHHHHHTTC
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCC----Ccccc--cc-cCcchhhccc--ccchHHHHHhhHHHHHHCCc
Confidence            4699999999999999999998  4579999942    11100  00 00000 0000  00112232333455677899


Q ss_pred             EEEEe-eEEEEEecCCcEEEEE--CC--eEEEcCEEEEccCCCCcCC
Q 016820          136 QIFTE-TVSKVDFKSRPFKVFT--DS--KSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       136 ~~~~~-~v~~i~~~~~~~~v~~--~~--~~~~~d~lvlA~G~~~~~~  177 (382)
                      +++.+ +|.+|+.+++.+++..  ++  .++.||++|+|+|..|..+
T Consensus        72 ~v~~~~~V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~~~~  118 (198)
T d1nhpa1          72 NVFSNTEITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVPFEL  118 (198)
T ss_dssp             EEEETEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEECCC
T ss_pred             EEEEeeceeeEeeccccceeeecccccccccccceeeEeecceeecc
Confidence            99988 7999999988877764  22  2488999999999987544

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.05  E-value=1.1e-09  Score=94.32  Aligned_cols=156  Identities=15%  Similarity=0.157  Sum_probs=106.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------------------c--------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------------------A--------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------------------~--------------  242 (382)
                      ..|+|||+|++|+-+|..|.+.|.+|+++++.+.+.                             .              
T Consensus         5 ~DViIIGaG~aGl~aA~~la~~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   84 (253)
T d2gqfa1           5 SENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWDFI   84 (253)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHHHH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhcccchh
Confidence            479999999999999999999999999999886540                             0              


Q ss_pred             -----------------------hH---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          243 -----------------------SK---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       243 -----------------------~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                                             ..   ..+.+.+++.||+++++++|.++...+++..+. +.+..    ++.++.+|.
T Consensus        85 ~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~-~~~~~----~~~~~~a~~  159 (253)
T d2gqfa1          85 SLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQV----NSTQWQCKN  159 (253)
T ss_dssp             HHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEE----TTEEEEESE
T ss_pred             hhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeE-EEEec----CCEEEEeCE
Confidence                                   00   111233455789999999999998876643222 22332    236799999


Q ss_pred             EEEeeCCCCChhhhc----------cccccc-----CCCce---eeCCCCCcC-CCCceEEecccCCc----hhhHHHHH
Q 016820          297 LFFAIGHEPATKFVD----------GQLDLH-----SDGYI---ITKPGTTHT-SVPGVFAAGDVQDK----KYRQAVTA  353 (382)
Q Consensus       297 vi~~~G~~p~~~~~~----------~~~~~~-----~~g~i---~vd~~~~~t-~~~~vya~GD~~~~----~~~~~~~a  353 (382)
                      ||+|||-.+-+..-.          .++..-     ..|.+   .+|+.+++. ..|++|.+|.+.+.    .-...+.|
T Consensus       160 VIiAtGG~S~p~~G~~g~g~~~a~~~~~~i~~~~~~~~ggv~~~~i~~~t~es~~~~gl~~~ge~ldv~g~~gg~n~~~a  239 (253)
T d2gqfa1         160 LIVATGGLSMPGLGATPFGYQIAEQFGIPVIPPRAVTMGGVDTKVISSKTMESNQVSGLYFIGEVLDVTGWLGGYNFQWA  239 (253)
T ss_dssp             EEECCCCSSCGGGTCCSHHHHHHHHTTCCEEEEEEEEEEEECGGGBCTTTCBBSSSTTEEECGGGBSCEECTTTHHHHHH
T ss_pred             EEEcCCcccccccCCCchHHHHHHhccccccccccccCCCCcccccCccchhhhcCCCcEEeeeEEEeeeecCCEehhhh
Confidence            999999875443221          111110     01233   356555655 58999999977642    12356789


Q ss_pred             HhhHHHHHHHHHH
Q 016820          354 AGTGCMAALEAEH  366 (382)
Q Consensus       354 ~~~g~~aa~~i~~  366 (382)
                      ..+|..|++.|++
T Consensus       240 ~~s~~~~~~~~~~  252 (253)
T d2gqfa1         240 WSSAYACALSISR  252 (253)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HhHHHHHHHHHhc
Confidence            9999999999875

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=4.4e-13  Score=119.80  Aligned_cols=43  Identities=33%  Similarity=0.502  Sum_probs=36.6

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCccee
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ...+||+||||||+|+++|+.|+++  |++|+|+|    +...+||.+.
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~   92 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIE----SSVAPGGGSW   92 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEEC----SSSSCCTTTT
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEE----cCCCCcceeE
Confidence            4568999999999999999999975  99999999    5556677654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.04  E-value=2.9e-11  Score=99.96  Aligned_cols=102  Identities=21%  Similarity=0.277  Sum_probs=64.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFG  134 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  134 (382)
                      ..+++|+|||||++||++|..|+++|+ +|+|+|    +....++.+...        .+.......+...........+
T Consensus         2 ~~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E----~~~~~gg~~~~~--------~~~~~~~~~~~~~~~~~~~~~~   69 (196)
T d1gtea4           2 AYSAKIALLGAGPASISCASFLARLGYSDITIFE----KQEYVGGLSTSE--------IPQFRLPYDVVNFEIELMKDLG   69 (196)
T ss_dssp             GGGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEE----SSSSCSTHHHHT--------SCTTTSCHHHHHHHHHHHHTTT
T ss_pred             CCCCEEEEECChHHHHHHHHHHHHCCCCeEEEEE----ecCcccchhhhh--------ccccccccccccchhhhhhccc
Confidence            356899999999999999999999998 599999    455666655432        1122333455555555555666


Q ss_pred             cEEEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCC
Q 016820          135 TQIFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVA  174 (382)
Q Consensus       135 i~~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~  174 (382)
                      ..+....-  +....  ... .+.....++.+++|+|...
T Consensus        70 ~~~~~~~~--v~~~~--~~~-~~~~~~~~~~~~ia~g~~~  104 (196)
T d1gtea4          70 VKIICGKS--LSENE--ITL-NTLKEEGYKAAFIGIGLPE  104 (196)
T ss_dssp             CEEEESCC--BSTTS--BCH-HHHHHTTCCEEEECCCCCE
T ss_pred             eeEEeeEE--eccce--eee-ehhhccccceeeEEecccc
Confidence            66655421  11110  000 0112245899999999754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.02  E-value=1.7e-09  Score=96.49  Aligned_cols=115  Identities=30%  Similarity=0.372  Sum_probs=76.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcc-------eecCC------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQ-------LTTTS------------------------  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~-------~~~~~------------------------  105 (382)
                      ...||+|||+|++|+++|+.|++.|++|+||||..    ..||.       +....                        
T Consensus        22 et~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~----~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~   97 (322)
T d1d4ca2          22 ETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEP----IPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGG   97 (322)
T ss_dssp             EECSEEEECSSHHHHHHHHHHHTTTCCEEEECSSS----SSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHT
T ss_pred             CcceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC----CCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhcc
Confidence            35899999999999999999999999999999632    22221       10000                        


Q ss_pred             ----------------------------Ccc---cCCCC---------CCCCChHHHHHHHHHHHHHcCcEEEEe-eEEE
Q 016820          106 ----------------------------DVE---NFPGF---------PQGILGGDLMDRCRNQSLRFGTQIFTE-TVSK  144 (382)
Q Consensus       106 ----------------------------~~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~  144 (382)
                                                  .+.   .+.+.         ........+.+.+.+.+.+.|++++.+ .|++
T Consensus        98 ~~~~d~~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~t~v~~  177 (322)
T d1d4ca2          98 RNINDPELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVLWDNAVKRGTDIRLNSRVVR  177 (322)
T ss_dssp             TTCSCHHHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred             ccccCHHHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHHHHHHHhcCceEEEeeeccc
Confidence                                        000   00000         011235678888888889999999888 5888


Q ss_pred             EEecCC-c---EEEEEC-Ce--EEEcCEEEEccCCCCc
Q 016820          145 VDFKSR-P---FKVFTD-SK--SVLADTVIVATGAVAK  175 (382)
Q Consensus       145 i~~~~~-~---~~v~~~-~~--~~~~d~lvlA~G~~~~  175 (382)
                      +..+++ .   +.+... ++  .+.++.||+|||....
T Consensus       178 li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtGG~~~  215 (322)
T d1d4ca2         178 ILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAK  215 (322)
T ss_dssp             EECCSSSCCCEEEEEETTTEEEEEECSEEEECCCCCTT
T ss_pred             ccccccccccceEEEeecccEEEEeCCeEEEcCCCccc
Confidence            766433 3   333332 22  4899999999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.99  E-value=1.7e-09  Score=96.27  Aligned_cols=120  Identities=20%  Similarity=0.276  Sum_probs=76.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCC---CCCCcceecCC----------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAND---IAPGGQLTTTS----------------------------  105 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~---~~~gg~~~~~~----------------------------  105 (382)
                      ..+||||||+|++|+++|++|++.|.+|+||||.....   ...+|.+....                            
T Consensus        18 e~~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~   97 (317)
T d1qo8a2          18 ETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQN   97 (317)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCS
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhcccc
Confidence            46899999999999999999999999999999632111   00111110000                            


Q ss_pred             ------------------------Cc---ccCCC---------CCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820          106 ------------------------DV---ENFPG---------FPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK  148 (382)
Q Consensus       106 ------------------------~~---~~~~~---------~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~  148 (382)
                                              .+   ....+         +.......++...+.+.+++.|+.++.+ +++++..+
T Consensus        98 d~~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~  177 (317)
T d1qo8a2          98 DIKLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVN  177 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEEC
T ss_pred             chhHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeec
Confidence                                    00   00000         0011234678889999999999999888 67776553


Q ss_pred             -CCcE---EEEECC-e--EEEcCEEEEccCCCCcC
Q 016820          149 -SRPF---KVFTDS-K--SVLADTVIVATGAVAKK  176 (382)
Q Consensus       149 -~~~~---~v~~~~-~--~~~~d~lvlA~G~~~~~  176 (382)
                       ++.+   .+...+ .  .+.++.||+|||.....
T Consensus       178 ~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~~~n  212 (317)
T d1qo8a2         178 DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMN  212 (317)
T ss_dssp             TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTC
T ss_pred             ccccceeeEeecccceEEEEeccceEEeccccccC
Confidence             3332   233322 2  48899999999986543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.98  E-value=1.1e-09  Score=94.57  Aligned_cols=117  Identities=13%  Similarity=0.001  Sum_probs=71.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCC----------CcccCCC----------CC---
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTS----------DVENFPG----------FP---  114 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~----------~~~~~~~----------~~---  114 (382)
                      ..+|+|||||++|+++|..|++.|++|+|+|+........+..+....          .......          ..   
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   83 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence            468999999999999999999999999999974322222232211110          0000000          00   


Q ss_pred             ------CCCChHHHHH-HHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEEC-CeEEEcCEEEEccCCCC
Q 016820          115 ------QGILGGDLMD-RCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTD-SKSVLADTVIVATGAVA  174 (382)
Q Consensus       115 ------~~~~~~~~~~-~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~-~~~~~~d~lvlA~G~~~  174 (382)
                            .......... +........+..++.+ .+++++...+.+++..+ +.++++|++|.|.|..+
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~v~v~~~dG~~~~~d~~v~adG~~s  152 (265)
T d2voua1          84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSETVQMRFSDGTKAEANWVIGADGGAS  152 (265)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCceEEEECCCCEEEEEEEeccccccc
Confidence                  0001111111 1122223345666667 78999988888888874 45699999999999864

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.95  E-value=6.7e-11  Score=100.49  Aligned_cols=107  Identities=16%  Similarity=0.216  Sum_probs=72.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHc--CCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           59 TKVCIIGSGPAAHTAAIYAARA--ELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~--g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ++|+||||||||++||..|++.  |++|+|+|    ....+||.+.+.       ..+.......+..+......+.|++
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e----~~~~~gG~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~   70 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYE----KQLVPFGLVRFG-------VAPDHPEVKNVINTFTQTARSDRCA   70 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEEC----SSSSSCTHHHHT-------SCTTCGGGGGHHHHHHHHHTSTTEE
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEe----CCCCCCceehhh-------ccccccccccchhhhhhhhhcCCee
Confidence            4899999999999999999886  78999999    566788876542       1223345566777777788888998


Q ss_pred             EEEeeEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc-CCCCCCCc
Q 016820          137 IFTETVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK-KLQFPGSD  183 (382)
Q Consensus       137 ~~~~~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~-~~~~~g~~  183 (382)
                      +..++..  ..+   +.+  ..-.-.||.+++|+|+.+. .+..++..
T Consensus        71 ~~~~~~v--~~~---~~~--~~l~~~~d~v~~a~Ga~~~~~~~~~~~~  111 (230)
T d1cjca2          71 FYGNVEV--GRD---VTV--QELQDAYHAVVLSYGAEDKSRPIDPSVP  111 (230)
T ss_dssp             EEBSCCB--TTT---BCH--HHHHHHSSEEEECCCCCEECCCCCTTSC
T ss_pred             EEeeEEe--Ccc---ccH--HHHHhhhceEEEEeeccccccccccccc
Confidence            8776421  111   000  0001258999999999653 33444443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.95  E-value=6e-09  Score=89.16  Aligned_cols=155  Identities=17%  Similarity=0.221  Sum_probs=103.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc--------------------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA--------------------------------------------  242 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~--------------------------------------------  242 (382)
                      .|+|||+|++|+.+|..|.+.|.+|+++++.+.+..                                            
T Consensus         4 DViIIGaG~aGl~aA~~la~~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (251)
T d2i0za1           4 DVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFNNEDI   83 (251)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSCHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhhhHHH
Confidence            699999999999999999999999999998765400                                            


Q ss_pred             -------------------------hHHH---HHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEec
Q 016820          243 -------------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKV  294 (382)
Q Consensus       243 -------------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~  294 (382)
                                               ...+   +.+.+++.||+++.+++++++..+++.  +..+.++     ++..+.+
T Consensus        84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~--~~~v~~~-----~g~~i~a  156 (251)
T d2i0za1          84 ITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQ--TKAVILQ-----TGEVLET  156 (251)
T ss_dssp             HHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTE--EEEEEET-----TCCEEEC
T ss_pred             HHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCE--EEEEEeC-----CCCeEec
Confidence                                     0001   112345679999999999999987653  3333332     2357999


Q ss_pred             CeEEEeeCCCCChhh---------hc-ccccccC--CCceee---CC-CCCcCCCCceEEecccCCc----hhhHHHHHH
Q 016820          295 SGLFFAIGHEPATKF---------VD-GQLDLHS--DGYIIT---KP-GTTHTSVPGVFAAGDVQDK----KYRQAVTAA  354 (382)
Q Consensus       295 D~vi~~~G~~p~~~~---------~~-~~~~~~~--~g~i~v---d~-~~~~t~~~~vya~GD~~~~----~~~~~~~a~  354 (382)
                      |.||+|+|....+..         +. .+..+.+  .+.+.+   ++ .......|++|++|++...    .-.....|.
T Consensus       157 ~~vI~AtGg~S~p~~Gs~g~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~l~~~~~~gG~~~~~a~  236 (251)
T d2i0za1         157 NHVVIAVGGKSVPQTGSTGDGYAWAEKAGHTITELFGGGVSVKEINPKEMSSKFTNGLYFCGEVLDIHGYTGGYNITSAL  236 (251)
T ss_dssp             SCEEECCCCSSSGGGSCSSHHHHHHHHTTCCEEEEEEEEECGGGEETTTTEESSSBTEEECGGGBSCBCCTTTHHHHHHH
T ss_pred             CeEEEccCCccccccCCCcccchhcccceeeeeeeeecccCccccCchhHHHhcCCCcEeeeeEEEccCCcchHHHHHHH
Confidence            999999998754321         11 1222111  111111   11 1334578999999998631    123467888


Q ss_pred             hhHHHHHHHHHHHH
Q 016820          355 GTGCMAALEAEHYL  368 (382)
Q Consensus       355 ~~g~~aa~~i~~~l  368 (382)
                      ..|+.++..++++.
T Consensus       237 ~~G~~a~~~~~~~~  250 (251)
T d2i0za1         237 VTGRIAGTTAGENA  250 (251)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999999998764

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.94  E-value=8.8e-10  Score=88.41  Aligned_cols=104  Identities=21%  Similarity=0.226  Sum_probs=67.7

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEE
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFT  139 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~  139 (382)
                      +|||||||++|+++|..|++ +.+|+|+++...    +...   ......+  .........+..+..+...+.+++++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~----~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~   71 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV----PYYS---KPMLSHY--IAGFIPRNRLFPYSLDWYRKRGIEIRL   71 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS----CCCC---STTHHHH--HTTSSCGGGGCSSCHHHHHHHTEEEEC
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc----cccc---ccchhhh--hhhhhhhhhhhHHHHHHHHhccceeee
Confidence            69999999999999999975 679999995211    0000   0000000  001112222333445556777999988


Q ss_pred             e-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCc
Q 016820          140 E-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAK  175 (382)
Q Consensus       140 ~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~  175 (382)
                      + .++.++....  .+..+++++.||++|+|+|..|.
T Consensus        72 ~~~v~~i~~~~~--~~~~~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          72 AEEAKLIDRGRK--VVITEKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             SCCEEEEETTTT--EEEESSCEEECSEEEECCCEECC
T ss_pred             eccccccccccc--cccccccccccceeEEEEEecCC
Confidence            8 6888876544  44557788999999999998764

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.91  E-value=8.5e-10  Score=98.80  Aligned_cols=39  Identities=33%  Similarity=0.428  Sum_probs=34.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGG   99 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg   99 (382)
                      .+++|+|||||++||++|+.|++.|++|+|+|+    ...+||
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~----~~~~GG   67 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEA----SERPGG   67 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECS----SSSSBT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeC----CCCCCC
Confidence            457999999999999999999999999999994    444554

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.91  E-value=1.5e-08  Score=90.07  Aligned_cols=159  Identities=18%  Similarity=0.257  Sum_probs=108.0

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  241 (382)
                      -.|+|||+|..|+-+|..+++.|.+|.++++.+...                                            
T Consensus        24 ~DVvVIG~G~aGl~aA~~la~~G~~V~llEk~~~~gG~s~~s~Ggi~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~  103 (322)
T d1d4ca2          24 TDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTKLAAGGMNAAETKPQAKLGIEDKKQIMIDDTMKGGRNINDP  103 (322)
T ss_dssp             CSEEEECSSHHHHHHHHHHHTTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             ceEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCcccccCCcccccCchhhhhcccCCCHHHHHHHHHhccccccCH
Confidence            469999999999999999999999999998765320                                            


Q ss_pred             --------------------------------------------------chHHHHHHhccCCCcEEEcCceeEEEEecC
Q 016820          242 --------------------------------------------------ASKIMQNRALTNPKIDVIWNSVVLEAYGEG  271 (382)
Q Consensus       242 --------------------------------------------------~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~  271 (382)
                                                                        ....+ .+...+.|++++.++++.++..++
T Consensus       104 ~~~~~~~~~~~~~i~~l~~~Gv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~a~~~gv~i~~~t~v~~li~d~  182 (322)
T d1d4ca2         104 ELVKVLANNSSDSIDWLTSMGADMTDVGRMGGASVNRSHRPTGGAGVGAHVAQVL-WDNAVKRGTDIRLNSRVVRILEDA  182 (322)
T ss_dssp             HHHHHHHHTHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCSHHHHHHHH-HHHHHHTTCEEETTEEEEEEECCS
T ss_pred             HHhhhhhhhhhhhhhhhhhhcccccccccccccccccccccccccchhHHHHHHH-HHHHHhcCceEEEeeecccccccc
Confidence                                                              00011 112334799999999999998876


Q ss_pred             CceeeeeEEEEeccCCceEEEecCeEEEeeCCCC-Chhhhc---------------------------c----------c
Q 016820          272 DKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP-ATKFVD---------------------------G----------Q  313 (382)
Q Consensus       272 ~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p-~~~~~~---------------------------~----------~  313 (382)
                      +|+ +.+|.+.+.. +....+.++.||+|||--. +...+.                           .          +
T Consensus       183 ~G~-V~Gv~~~~~~-~~~~~i~Ak~VIlAtGG~~~n~~~~~~~~~~~~~~~~~~~~~~tGdg~~~a~~aGa~~~~~e~~~  260 (322)
T d1d4ca2         183 SGK-VTGVLVKGEY-TGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGFKATNHPGATGDGLDVALQAGAATRDLEMGG  260 (322)
T ss_dssp             SSC-CCEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTBCEECTTCCE
T ss_pred             ccc-ccceEEEeec-ccEEEEeCCeEEEcCCCcccCHHHHHhhCcccccccccCCCCccCHHHHHHHHcCCcceecccce
Confidence            664 6778777633 3345689999999998432 221111                           0          1


Q ss_pred             ccccCCCceeeCCCCCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          314 LDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       314 ~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      +.++..+.+..+  ...+.+|+|||+|+|++..       -.....++..|+.|+++++++.+
T Consensus       261 ~~~~~~~~~~~~--~~~~~v~Glya~Ge~~~gvhG~nrlg~~~~~e~~v~g~~ag~~aa~~~~  321 (322)
T d1d4ca2         261 LVIDTKAEVKSE--KTGKPITGLYAAGEVTGGVHGANRLGGNAISDIVTYGRIAGASAAKFAK  321 (322)
T ss_dssp             ECCCTTCEEEBT--TTSSEEEEEEECGGGBCSSSTTSCCTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecCceEEEEC--CCCCEeCceEEchhhcCCccccccchhhHHHHHHHHHHHHHHHHHHHhh
Confidence            111222333222  2356789999999997421       22466778889999999999876

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=98.91  E-value=4.3e-10  Score=91.81  Aligned_cols=103  Identities=17%  Similarity=0.207  Sum_probs=66.6

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHH------HHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDR------CRNQSL  131 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  131 (382)
                      +.+|+|||||++|+++|..|+++|.++.+++...    .....+..       +..     ...+...      ......
T Consensus         3 ~a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~----~~~~~~~~-------~~l-----~~~~~~~~~~~~~~~~~~~   66 (183)
T d1d7ya1           3 KAPVVVLGAGLASVSFVAELRQAGYQGLITVVGD----EAERPYDR-------PPL-----SKDFMAHGDAEKIRLDCKR   66 (183)
T ss_dssp             CSSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES----SCSCCBCS-------GGG-----GTTHHHHCCGGGSBCCGGG
T ss_pred             CCCEEEECccHHHHHHHHHHHhcCCceEEEEEec----ccccchhh-------HHH-----hhhhhhhhhhhhHHHHHhh
Confidence            4579999999999999999999998887776210    11100000       000     0001100      011123


Q ss_pred             HcCcEEEEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCC
Q 016820          132 RFGTQIFTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKL  177 (382)
Q Consensus       132 ~~gi~~~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~  177 (382)
                      ..+++++.+ ++..++.+...+.+ .++.++.||.+|+|+|..|+..
T Consensus        67 ~~~i~~~~~~~v~~i~~~~~~~~~-~~g~~~~~D~vi~a~G~~p~~~  112 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQAHTVAL-SDGRTLPYGTLVLATGAAPRAV  112 (183)
T ss_dssp             STTCEEEETCCEEEEETTTTEEEE-TTSCEEECSEEEECCCEEECCE
T ss_pred             cCCeEEEEeccccccccccceeEe-cCCcEeeeeeEEEEEEEEcccc
Confidence            458999988 68899877664443 3567899999999999988654

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.91  E-value=1e-09  Score=96.31  Aligned_cols=120  Identities=18%  Similarity=0.148  Sum_probs=74.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCC---CCCCCcceecC---------------------CCcc-----
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMAN---DIAPGGQLTTT---------------------SDVE-----  108 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~---~~~~gg~~~~~---------------------~~~~-----  108 (382)
                      +.+|+|||||++|+++|..|+++|++|+|||+....   ....+..+...                     ....     
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~~~~~~~~~~~~l~~~~~~~l~~lg~~~~l~~~~~~~~~~~~~~~~   81 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTPDYVLGRIRAGVLEQGMVDLLREAGVDRRMARDGLVHEGVEIAFAG   81 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCHHHHHTCCCCCEECHHHHHHHHHTTCCHHHHHHCEEESCEEEEETT
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCCceEEEECHHHHHHHHHcCchHHHHhhcccccceEEEecc
Confidence            469999999999999999999999999999974211   01111111100                     0000     


Q ss_pred             ----------cCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-e-EEEEEecCCcEEEE--ECCe--EEEcCEEEEccCC
Q 016820          109 ----------NFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-T-VSKVDFKSRPFKVF--TDSK--SVLADTVIVATGA  172 (382)
Q Consensus       109 ----------~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~-v~~i~~~~~~~~v~--~~~~--~~~~d~lvlA~G~  172 (382)
                                .............+.+.+.+.+++.+...+.. + +..+..+.+.+.+.  .+++  ++++|+||.|.|.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~  161 (292)
T d1k0ia1          82 QRRRIDLKRLSGGKTVTVYGQTEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGF  161 (292)
T ss_dssp             EEEEECHHHHHTSCCEEECCHHHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCT
T ss_pred             cccccccccccccccceeecHHHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCC
Confidence                      00001112345678888888888887666555 4 44555555555443  3444  4789999999999


Q ss_pred             CCcCC
Q 016820          173 VAKKL  177 (382)
Q Consensus       173 ~~~~~  177 (382)
                      ++..-
T Consensus       162 ~S~vR  166 (292)
T d1k0ia1         162 HGISR  166 (292)
T ss_dssp             TCSTG
T ss_pred             CCccc
Confidence            76443

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.87  E-value=1.8e-09  Score=93.46  Aligned_cols=110  Identities=14%  Similarity=-0.028  Sum_probs=71.5

Q ss_pred             CCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc---ccc------cccCCCceee
Q 016820          254 PKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD---GQL------DLHSDGYIIT  324 (382)
Q Consensus       254 ~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~---~~~------~~~~~g~i~v  324 (382)
                      .+..++.++.+..+...+++     +.+..   .++..+.+|.++.+.+.........   ..+      ..+..++..+
T Consensus       223 ~~~~i~~~~~v~~i~~~~~~-----v~v~~---~~g~~~~~d~~~~~~~~~~l~~~~~~~~p~l~~~~~~ai~~~~~~~~  294 (347)
T d1b5qa1         223 VDPRLQLNKVVREIKYSPGG-----VTVKT---EDNSVYSADYVMVSASLGVLQSDLIQFKPKLPTWKVRAIYQFWPVGV  294 (347)
T ss_dssp             CCTTEESSCCEEEEEECSSC-----EEEEE---TTSCEEEESEEEECSCHHHHHTTSSEEESCCCHHHHHHHHHSCBTTC
T ss_pred             cccccccccccccccccCcc-----EEEEE---CCCCEEEcCEEEeecCHHHHhhcccccCCCCCHHHHHHHHhcCCccc
Confidence            45667888889998887764     45544   3346789999999875432111000   001      1112222222


Q ss_pred             CC---CCCcCCCCceEEecccCCch-hhHHHHHHhhHHHHHHHHHHHHHHc
Q 016820          325 KP---GTTHTSVPGVFAAGDVQDKK-YRQAVTAAGTGCMAALEAEHYLQEI  371 (382)
Q Consensus       325 d~---~~~~t~~~~vya~GD~~~~~-~~~~~~a~~~g~~aa~~i~~~l~~~  371 (382)
                      +.   ...+++.++||++||+++.. +..+..|+.+|..+|+.|+..++++
T Consensus       295 ~~~~~~~~~~~~~~v~~~GD~~~~~~~~~~~gA~~sG~~aA~~l~~~~~~~  345 (347)
T d1b5qa1         295 NRYEYDQLRAPVGRVYFTGEHTSEHYNGYVHGAYLSGIDSAEILINCAQKK  345 (347)
T ss_dssp             CHHHHHHHHCCBTTEEECSGGGCSSCTTSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhhcccccCCEEEEEccccCcCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence            21   12356789999999998643 5678889999999999999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.87  E-value=8.8e-10  Score=81.32  Aligned_cols=101  Identities=14%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             CCCCCCccc----cCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhcc
Q 016820          177 LQFPGSDAF----WNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALT  252 (382)
Q Consensus       177 ~~~~g~~~~----~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~  252 (382)
                      |.+||.+.|    .+..+|...|....  .+.+|+|+|||+|.+|+++|.+|.+.+++++++.+++...         ..
T Consensus         2 P~ipGl~~f~~~~~G~i~Hs~~y~~~~--~f~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r~~~~---------~~   70 (107)
T d2gv8a2           2 PNIKGLDEYAKAVPGSVLHSSLFREPE--LFVGESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD---------IQ   70 (107)
T ss_dssp             CCCBTHHHHHHHSTTSEEEGGGCCCGG--GGTTCCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS---------CB
T ss_pred             cCCCChHHHhccCCccEEECCcCcchh--hcCCCeEEEECCCCCHHHHHHHHHHhcCEEEEEEecCccc---------cc
Confidence            678887664    46788888888776  7899999999999999999999999998888888776542         22


Q ss_pred             CCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEE-ecCeEEEe
Q 016820          253 NPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDL-KVSGLFFA  300 (382)
Q Consensus       253 ~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~-~~D~vi~~  300 (382)
                      ..++..  ...+.+++.....     +.+.+   +  ..+ .+|.|++|
T Consensus        71 ~~~~~~--~~~i~~~~~~~~~-----v~~~d---G--~~~~~vD~Ii~C  107 (107)
T d2gv8a2          71 NESLQQ--VPEITKFDPTTRE-----IYLKG---G--KVLSNIDRVIYC  107 (107)
T ss_dssp             CSSEEE--ECCEEEEETTTTE-----EEETT---T--EEECCCSEEEEC
T ss_pred             ccccee--cCCeeEEecCCCE-----EEEcC---C--CEEeCCCEEEEC
Confidence            233433  3456777766642     55543   4  455 48999997

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=98.86  E-value=3.6e-09  Score=94.57  Aligned_cols=112  Identities=10%  Similarity=0.044  Sum_probs=66.9

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC--------Chhhhc-ccccccCCC-
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP--------ATKFVD-GQLDLHSDG-  320 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p--------~~~~~~-~~~~~~~~g-  320 (382)
                      +++.|++++++++|++|+.++++.   .+.+.. ..+++..+.+|.||+|++...        ..+... ..+...... 
T Consensus       245 ~~~~g~~i~~~~~V~~I~~~~~~v---~v~~~~-~~~~~~~~~aD~VI~A~p~~~l~~i~~~p~l~~~~~~ai~~~~~~~  320 (370)
T d2iida1         245 YRDIQDKVHFNAQVIKIQQNDQKV---TVVYET-LSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAHALRSVFTPY  320 (370)
T ss_dssp             HHHTGGGEESSCEEEEEEECSSCE---EEEEEC-SSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHHHHHHCCCTT
T ss_pred             HHhcCCccccCceEEEEEEeCCeE---EEEEEe-cCCCeEEEEeeEEEecCCHHHHhhCccCCCCCHHHHHHHHhcCCcc
Confidence            455688999999999999988751   123332 234557899999999986321        111000 000000001 


Q ss_pred             -ceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHHHH
Q 016820          321 -YIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       321 -~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                       +....+ .......+||.+||++.........|+..|..||.+|...
T Consensus       321 ~~~~~~~-~~~~~~g~v~~aGd~~~~~~~~~~~a~~sG~~aA~~i~~a  367 (370)
T d2iida1         321 QFQHFSD-PLTASQGRIYFAGEYTAQAHGWIDSTIKSGLRAARDVNLA  367 (370)
T ss_dssp             HHHHHHH-HHHCCBTTEEECSGGGSSSSSCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccch-hhhcccCCEEEecccccCCCcccHHHHHHHHHHHHHHHhh
Confidence             111111 1122346799999987644445678999999999998753

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=7.4e-09  Score=90.20  Aligned_cols=115  Identities=17%  Similarity=0.201  Sum_probs=70.0

Q ss_pred             cccccEEEECCcHHHHHHHHHHHH-cCCCeEEEecccCCCCCCCcceecCCCcc------------------cCCCCC--
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAAR-AELKPILFEGWMANDIAPGGQLTTTSDVE------------------NFPGFP--  114 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~-~g~~v~lie~~~~~~~~~gg~~~~~~~~~------------------~~~~~~--  114 (382)
                      ..++||+|||||++|+++|+.|++ .|++|+|+|+    ...+||.+.......                  .+...+  
T Consensus        31 ~~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~----~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  106 (278)
T d1rp0a1          31 YAETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQ----SVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTY  106 (278)
T ss_dssp             HTEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEES----SSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSE
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHccCCeEEEEec----CCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCcc
Confidence            457999999999999999999987 5999999994    344555443211100                  000000  


Q ss_pred             --CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEE-EEE---------------CCeEEEcCEEEEccCCCC
Q 016820          115 --QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFK-VFT---------------DSKSVLADTVIVATGAVA  174 (382)
Q Consensus       115 --~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~-v~~---------------~~~~~~~d~lvlA~G~~~  174 (382)
                        .......+...+.+.+...++.+..+ .+..+..++..+. +..               +...+.++.+|.|+|...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~  185 (278)
T d1rp0a1         107 VVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG  185 (278)
T ss_dssp             EEESCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred             ceecccHHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCc
Confidence              01122344455566666667777666 4555554444321 111               224588999999999753

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.82  E-value=5.2e-09  Score=88.54  Aligned_cols=66  Identities=20%  Similarity=0.344  Sum_probs=56.6

Q ss_pred             CcCCCCCCCccccCCCcceeeeccCCCCCCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          174 AKKLQFPGSDAFWNRGISACAVCDGAAPIFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      |+.|.+||.+.|.+..+|+.++..... ...+|+|+|||+|.+|+++|..+.+.+.+++++.+.+..
T Consensus         2 P~iP~~pG~e~F~G~v~HS~~~~~~~~-~~~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~~~~   67 (235)
T d1w4xa2           2 PQLPNFPGLKDFAGNLYHTGNWPHEPV-DFSGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPHF   67 (235)
T ss_dssp             CCCCCCTTGGGCCSEEEEGGGCCSSCC-CCBTCEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCCC
T ss_pred             CCCCCCCChhhCCCcEEecCcCCCCCC-CCCCCEEEEECCCccHHHHHHHHHhhhccccccccccce
Confidence            889999999999988899988853321 568999999999999999999999999998888777644

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=1.5e-08  Score=79.50  Aligned_cols=98  Identities=17%  Similarity=0.223  Sum_probs=69.5

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCCCCc--chHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRDSFR--ASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGL  279 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~~~~--~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v  279 (382)
                      ..+++|+|||||++|+|+|..+.++|. .|++++|++...  ...... ..+...+++++....+.++..+++.  +..+
T Consensus        43 ~~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~~~~a~~~~~-~~a~~~~~~~~~~~~~~ei~~~~~~--~~~v  119 (153)
T d1gtea3          43 SIRGAVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFVNIRAVPEEV-ELAKEEKCEFLPFLSPRKVIVKGGR--IVAV  119 (153)
T ss_dssp             CCCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGGGCCSCHHHH-HHHHHTTCEEECSEEEEEEEEETTE--EEEE
T ss_pred             cCCCEEEEECCChhHHHHHHHHHHcCCcceeEEEeCChhhhccchhhe-eecccccceeEeccccEEEEecCCc--eEEE
Confidence            346789999999999999999999974 588998887543  233332 2344578899999888888876643  2223


Q ss_pred             EEEec----------cCCceEEEecCeEEEeeCC
Q 016820          280 KVKNL----------VTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       280 ~~~~~----------~~~~~~~~~~D~vi~~~G~  303 (382)
                      .+...          .+++..+++||.||++.|.
T Consensus       120 ~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG~  153 (153)
T d1gtea3         120 QFVRTEQDETGKWNEDEDQIVHLKADVVISAFGS  153 (153)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEEEECSEEEECSCE
T ss_pred             EEEEeeECCCCCEecCCCCEEEEECCEEEECcCc
Confidence            22111          1244577999999999983

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.78  E-value=1.3e-08  Score=80.40  Aligned_cols=99  Identities=10%  Similarity=0.012  Sum_probs=61.7

Q ss_pred             ccccccccccccccC-----CCCCCCcccccccccccEEEE--CCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcce
Q 016820           29 TTSSAAAAASFSATT-----APKISNAMDEIQTLKTKVCII--GSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQL  101 (382)
Q Consensus        29 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~vvII--GaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~  101 (382)
                      +|+.+..+..++...     ..++.............++|+  |||+.|+++|..|+++|++|+|+++.    ..+.   
T Consensus         5 tG~~~~~~~pipG~~~~~~~v~t~~d~l~~~~~~~~~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~----~~~~---   77 (156)
T d1djqa2           5 DGTNCLTHDPIPGADASLPDQLTPEQVMDGKKKIGKRVVILNADTYFMAPSLAEKLATAGHEVTIVSGV----HLAN---   77 (156)
T ss_dssp             SCCCTTTSSCCTTCCTTSTTEECHHHHHHTCSCCCSEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESS----CTTT---
T ss_pred             CCCCCCCCCCCCCccCCCCEEECHHHHhcCccccCCceEEEecCCChHHHHHHHHHHHcCCeEEEEecC----Cccc---
Confidence            676666553333321     122222222223334455555  99999999999999999999999931    0111   


Q ss_pred             ecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEec
Q 016820          102 TTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFK  148 (382)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~  148 (382)
                                    .....+....+.+.+.+.|++++.+ ++.+|+.+
T Consensus        78 --------------~~~~~~~~~~~~~~l~~~GV~i~~~~~v~~i~~~  111 (156)
T d1djqa2          78 --------------YMHFTLEYPNMMRRLHELHVEELGDHFCSRIEPG  111 (156)
T ss_dssp             --------------HHHHTTCHHHHHHHHHHTTCEEEETEEEEEEETT
T ss_pred             --------------cccchhHHHHHHHHHhhccceEEeccEEEEecCc
Confidence                          0112234456677778889999999 68888754

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.78  E-value=1.5e-08  Score=88.01  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=30.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEecc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEGW   90 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~   90 (382)
                      +.||+|||||++|+++|+.|+++|. +|+|+|+.
T Consensus         1 ~~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~   34 (288)
T d3c96a1           1 PIDILIAGAGIGGLSCALALHQAGIGKVTLLESS   34 (288)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCC
Confidence            3689999999999999999999996 89999974

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.77  E-value=1.4e-08  Score=81.59  Aligned_cols=122  Identities=20%  Similarity=0.170  Sum_probs=81.4

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-----------------hHHHHHHhccCCCcEEEcCcee
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-----------------SKIMQNRALTNPKIDVIWNSVV  264 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~v  264 (382)
                      ...+|+|+|||+|+.|++.|..|.++|++|+++++.+.+..                 .+++ .+.+++.||++++++.+
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~-~~~~~~~gV~i~l~~~V  118 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYY-RRMIEVTGVTLKLNHTV  118 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHH-HHHHHHHTCEEEESCCC
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEEEEeCcccchHHHHHHHH-HHhhhcCCeEEEeCCEE
Confidence            55689999999999999999999999999999999886621                 1222 24456679999988765


Q ss_pred             EEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCC
Q 016820          265 LEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQD  344 (382)
Q Consensus       265 ~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~  344 (382)
                      +.                    +  ....+|.+++++|..|...... ++.                .-.++-++|....
T Consensus       119 t~--------------------~--~~~~~d~vilAtG~~~~~~~~p-g~~----------------~g~~v~vigggd~  159 (179)
T d1ps9a3         119 TA--------------------D--QLQAFDETILASGIPNRALAQP-LID----------------SGKTVHLIGGCDV  159 (179)
T ss_dssp             CS--------------------S--SSCCSSEEEECCCEECCTTHHH-HHT----------------TTCCEEECGGGTC
T ss_pred             cc--------------------c--ccccceeEEEeecCCCcccccc-hhc----------------cCCEEEEECCcHh
Confidence            21                    1  1246899999999987654333 221                1234445553321


Q ss_pred             chhhHHHHHHhhHHHHHHH
Q 016820          345 KKYRQAVTAAGTGCMAALE  363 (382)
Q Consensus       345 ~~~~~~~~a~~~g~~aa~~  363 (382)
                      ...-....|..+|..++..
T Consensus       160 a~~~~~~~Av~~G~~va~~  178 (179)
T d1ps9a3         160 AMELDARRAIAQGTRLALE  178 (179)
T ss_dssp             CSSCCHHHHHHHHHHHHHH
T ss_pred             hhhccchhhhhccCEEEEe
Confidence            1222356777777766543

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=98.76  E-value=1.5e-08  Score=86.94  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~   90 (382)
                      ..++|+|||||++|+++|+.|+++|++|+|||+.
T Consensus         5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~   38 (268)
T d1c0pa1           5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD   38 (268)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence            4568999999999999999999999999999964

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.75  E-value=1.3e-06  Score=78.24  Aligned_cols=45  Identities=27%  Similarity=0.345  Sum_probs=35.0

Q ss_pred             CcCCCCceEEecccCCch-hhHHHHHHhhHHHHHHHHHHHHHHccC
Q 016820          329 THTSVPGVFAAGDVQDKK-YRQAVTAAGTGCMAALEAEHYLQEIGS  373 (382)
Q Consensus       329 ~~t~~~~vya~GD~~~~~-~~~~~~a~~~g~~aa~~i~~~l~~~~~  373 (382)
                      ..+..|++|.+||+.+.. .+....+...+.++++++.+++.+...
T Consensus       281 ~~~~~~gl~~~g~~~~~~g~rf~~~~~~~g~~a~~~~~~~i~~~~~  326 (356)
T d1jnra2         281 RMTTVKGLFAIGDCAGANPHKFSSGSFTEGRIAAKAAVRFILEQKP  326 (356)
T ss_dssp             TBCSSBTEEECGGGBCSCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred             cccccccccccchhcCCccccCccccccccchhHHHHHHHHHcCCC
Confidence            456789999999987533 334556788899999999999987654

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=6.6e-08  Score=81.08  Aligned_cols=102  Identities=20%  Similarity=0.265  Sum_probs=73.0

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhc--------------------C-CEEEEEEeCCCCcc--hHHHHH----------
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKY--------------------G-SKVYIIHRRDSFRA--SKIMQN----------  248 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~--------------------g-~~v~~~~~~~~~~~--~~~~~~----------  248 (382)
                      ...+++|+|||+|++|+++|..+.+.                    + .+|+++.|++....  ....++          
T Consensus        36 ~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~  115 (225)
T d1cjca1          36 DLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRP  115 (225)
T ss_dssp             CTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEE
T ss_pred             cccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEcChHhCCCCchhhhcccccCCCcc
Confidence            44589999999999999999998873                    3 68999999875411  100000          


Q ss_pred             -------------------------------------------HhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec-
Q 016820          249 -------------------------------------------RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL-  284 (382)
Q Consensus       249 -------------------------------------------~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~-  284 (382)
                                                                 .....+++.+++...+.++..++.|..+..+++... 
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~  195 (225)
T d1cjca1         116 MLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTR  195 (225)
T ss_dssp             ECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEE
T ss_pred             eechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccccccceEEEeecccccccccCCCCeEEEEEEEEeE
Confidence                                                       011235688899999999999887655666665432 


Q ss_pred             -----------cCCceEEEecCeEEEeeCC
Q 016820          285 -----------VTGQVSDLKVSGLFFAIGH  303 (382)
Q Consensus       285 -----------~~~~~~~~~~D~vi~~~G~  303 (382)
                                 .+++...++||+||.|+||
T Consensus       196 ~~~~~~~~~~~~tg~~~~ipadlVi~AiGf  225 (225)
T d1cjca1         196 LEGIGEATRAVPTGDVEDLPCGLVLSSIGY  225 (225)
T ss_dssp             EESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred             ECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence                       1244577999999999996

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.69  E-value=1e-07  Score=86.59  Aligned_cols=94  Identities=21%  Similarity=0.311  Sum_probs=61.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHH------cCCCeEEEeccc--CCCCCCCcceecC------------------------
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAAR------AELKPILFEGWM--ANDIAPGGQLTTT------------------------  104 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~------~g~~v~lie~~~--~~~~~~gg~~~~~------------------------  104 (382)
                      .++||+||||||||+++|+.|++      .|++|+|||+..  ......|+.+...                        
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~  110 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDR  110 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEE
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecce
Confidence            46999999999999999999998      799999999642  2222224332100                        


Q ss_pred             ------CCcccCCCCC---------CCCChHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCC
Q 016820          105 ------SDVENFPGFP---------QGILGGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSR  150 (382)
Q Consensus       105 ------~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~  150 (382)
                            .........+         .......+..++.+.++..++.+..+ .+.++..++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Ae~~g~~~~~~~~~~~~l~~~~  172 (380)
T d2gmha1         111 FGILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWMGEQAEALGVEVYPGYAAAEILFHED  172 (380)
T ss_dssp             EEEECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHHHHHHHHTTCEEETTCCEEEEEECTT
T ss_pred             EEEeeccccccccccCchhcccccceeehhhHHHHHHHHHHhhccceeeeecceeeeeeccC
Confidence                  0000000000         11356788889999999999998877 5777665544

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.68  E-value=1.7e-08  Score=81.96  Aligned_cols=115  Identities=14%  Similarity=0.091  Sum_probs=67.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcEE
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQI  137 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~  137 (382)
                      ..+|||||||++|+++|..|+++|.++++++...    ..............+..  ...................+..+
T Consensus         3 ~~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~----~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~   76 (185)
T d1q1ra1           3 NDNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGD----ATVIPHHLPPLSKAYLA--GKATAESLYLRTPDAYAAQNIQL   76 (185)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECS----CCSCCBCSGGGGTTTTT--TCSCSGGGBSSCHHHHHHTTEEE
T ss_pred             CCCEEEECCcHHHHHHHHHHHHcCCceEEEEecC----ccccchhhhHHHHHHHH--hhhhhhhhhhhhhhhhcccceee
Confidence            4689999999999999999999999998887321    11111000000000000  01111112222223335556666


Q ss_pred             EEe-eEEEEEecCCcEEEEECCeEEEcCEEEEccCCCCcCCCC
Q 016820          138 FTE-TVSKVDFKSRPFKVFTDSKSVLADTVIVATGAVAKKLQF  179 (382)
Q Consensus       138 ~~~-~v~~i~~~~~~~~v~~~~~~~~~d~lvlA~G~~~~~~~~  179 (382)
                      ..+ .+..++.+...+ ...++.++.+|.+++++|..|..|.+
T Consensus        77 ~~~~~~~~~~~~~~~v-~~~~~~~i~~d~~i~~~G~~~~~~~~  118 (185)
T d1q1ra1          77 LGGTQVTAINRDRQQV-ILSDGRALDYDRLVLATGGRPLIPNC  118 (185)
T ss_dssp             ECSCCEEEEETTTTEE-EETTSCEEECSEEEECCCEEEEEECC
T ss_pred             eccceeeeecccccEE-EeeceeEEEeeeeeeeeecccCCCCc
Confidence            666 466666554433 33356779999999999998766544

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.67  E-value=3.9e-08  Score=84.51  Aligned_cols=131  Identities=23%  Similarity=0.331  Sum_probs=78.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------ch-----------------------------------
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------AS-----------------------------------  243 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------~~-----------------------------------  243 (382)
                      .++|||+|+.|+.+|..+++.|.+|.++++...-.        ++                                   
T Consensus         3 DviVIG~G~aG~~aA~~aa~~G~~V~liE~~~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~   82 (259)
T d1onfa1           3 DLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPLLVER   82 (259)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSTTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHHHHHH
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhhHHhh
Confidence            48999999999999999999999999999753110        00                                   


Q ss_pred             --------HHHHHHhccCCCcEEEcCce-eE-----EEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC---
Q 016820          244 --------KIMQNRALTNPKIDVIWNSV-VL-----EAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA---  306 (382)
Q Consensus       244 --------~~~~~~~l~~~gv~~~~~~~-v~-----~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~---  306 (382)
                              ....+..+++.||+++.+.- +.     .+....+.     ... +....++..+.+|.+++|||.+|.   
T Consensus        83 ~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~-----~~~-~~~~~~~~~i~a~~iiIATGs~P~~~~  156 (259)
T d1onfa1          83 RDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDN-----NNK-DNGPLNEEILEGRNILIAVGNKPVGRS  156 (259)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------------CBSSEEECCCCCBCCBC
T ss_pred             hheeeeccccchhhhcccccceEEeeecccccccccccccceec-----ccc-ccCccceEEEeeeeEEEecCCCCcccc
Confidence                    00012345667888876531 11     11111110     000 001123357999999999999993   


Q ss_pred             --hhhhc-cccc-ccCCCceeeCCCCCcCCCCceEEecccCC
Q 016820          307 --TKFVD-GQLD-LHSDGYIITKPGTTHTSVPGVFAAGDVQD  344 (382)
Q Consensus       307 --~~~~~-~~~~-~~~~g~i~vd~~~~~t~~~~vya~GD~~~  344 (382)
                        .+.+. .... +++++++.+|. ..++...++|++||+..
T Consensus       157 ~~~~~~~l~~~~i~ts~~~~~~d~-~~~t~Vig~gaiGdv~~  197 (259)
T d1onfa1         157 PDTENLKLEKLNVETNNNYIVVDE-NQRTSVNNIYAVGDCCM  197 (259)
T ss_dssp             CTTTTSSCTTTTCCBSSSCEEECT-TCBCSSSSEEECSTTEE
T ss_pred             ccccccccccceeeeccccccccc-CCceeEeeEEEEEEeee
Confidence              33332 1111 35678889987 67889999999999974

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.63  E-value=1.9e-07  Score=82.60  Aligned_cols=162  Identities=16%  Similarity=0.174  Sum_probs=106.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------------------------------------------  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------------------------------------------  241 (382)
                      -.|+|||+|..|+-.|..+.+.|.+|.++++.+...                                            
T Consensus        20 ~DVvVIGaG~aGl~AA~~aa~~G~~V~vlEK~~~~gG~S~~a~Ggi~a~~~~~~~~~g~~d~~~~~~~d~~~~~~~~~d~   99 (317)
T d1qo8a2          20 TQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSMISAGGMNAVGTKQQTAHGVEDKVEWFIEDAMKGGRQQNDI   99 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             cCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCCchhhcCCCcccccchhhhhcccCCcHHHHHHHHHHhhccccch
Confidence            469999999999999999999999999998765320                                            


Q ss_pred             -----------------------c-----------------------hHHH---HHHhccCCCcEEEcCceeEEEEecCC
Q 016820          242 -----------------------A-----------------------SKIM---QNRALTNPKIDVIWNSVVLEAYGEGD  272 (382)
Q Consensus       242 -----------------------~-----------------------~~~~---~~~~l~~~gv~~~~~~~v~~i~~~~~  272 (382)
                                             +                       ...+   +.+.+++.|++++.++++.++..+++
T Consensus       100 ~lv~~~~~~a~~~i~~l~~~Gv~~~~~~~~gg~~~~r~~~~~~g~~~g~~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~  179 (317)
T d1qo8a2         100 KLVTILAEQSADGVQWLESLGANLDDLKRSGGARVDRTHRPHGGKSSGPEIIDTLRKAAKEQGIDTRLNSRVVKLVVNDD  179 (317)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEECSSSSCHHHHHHHHHHHHHHHTTCCEECSEEEEEEEECTT
T ss_pred             hHHHHHHhhhhhhhhhHHHhhhcccccccccCcccccccccccccccchhhhHHHHHHhhhccceeeeccchhheeeccc
Confidence                                   0                       0001   11234567899999999999877666


Q ss_pred             ceeeeeEEEEeccCCceEEEecCeEEEeeCCC-CChhhhc---------------------------ccccccCCCceee
Q 016820          273 KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE-PATKFVD---------------------------GQLDLHSDGYIIT  324 (382)
Q Consensus       273 g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~-p~~~~~~---------------------------~~~~~~~~g~i~v  324 (382)
                      ++ +.++.+.+. .+....+.++.||+|||-- .+..++.                           .+..+.+=-++++
T Consensus       180 g~-V~Gv~~~~~-~~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdGi~ma~~~Ga~l~~me~vq~  257 (317)
T d1qo8a2         180 HS-VVGAVVHGK-HTGYYMIGAKSVVLATGGYGMNKEMIAYYRPTMKDMTSSNNITATGDGVLMAKEIGASMTDIDWVQA  257 (317)
T ss_dssp             SB-EEEEEEEET-TTEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCEECSCTTCSCHHHHHHHHTTBCEESTTCEEE
T ss_pred             cc-ceeeEeecc-cceEEEEeccceEEeccccccCHHHHHHhhhccccccccCCCCcCcHHHHHHHHcCCeecCCcceee
Confidence            54 777777763 3444568999999999853 2222111                           0111111012221


Q ss_pred             CCC-------CCcCCCCceEEecccCCch-------hhHHHHHHhhHHHHHHHHHHHHH
Q 016820          325 KPG-------TTHTSVPGVFAAGDVQDKK-------YRQAVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       325 d~~-------~~~t~~~~vya~GD~~~~~-------~~~~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ..+       ...+..|++||+|+|++..       --....++..|+.|+++++++.+
T Consensus       258 ~~~~~~~~~d~~~~~i~gl~aaGe~~~g~hG~nrlggnsl~~~~vfg~~ag~~aa~~~~  316 (317)
T d1qo8a2         258 AINTTASVLDLQSKPIDGLFAAGEVTGGVHGYNRLGGNAIADTVVFGRIAGDNAAKHAL  316 (317)
T ss_dssp             CBCTTCEEEBTTSCEEEEEEECSTTBCSSSTTCCCTTHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             ccCCccEEeCCCCCEECCEeehhhhccCCCCCCccccchHHHHHHHHHHHHHHHHHHhh
Confidence            110       1234579999999998521       23566788889999999988764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.60  E-value=1.8e-08  Score=85.96  Aligned_cols=42  Identities=14%  Similarity=0.170  Sum_probs=37.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ..+||||||||++|+.+|+.|++.|++|+|+|    +...+||.+.
T Consensus         4 ~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE----~~~~~GG~~~   45 (297)
T d2bcgg1           4 TDYDVIVLGTGITECILSGLLSVDGKKVLHID----KQDHYGGEAA   45 (297)
T ss_dssp             CBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEc----CCCCCCcceE
Confidence            46999999999999999999999999999999    5667888754

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.60  E-value=4.5e-07  Score=79.64  Aligned_cols=160  Identities=22%  Similarity=0.284  Sum_probs=103.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcc-------------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRA-------------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~-------------------------------------------  242 (382)
                      -.|+|||+|..|+-.|..+.+.|.+|+++++.+....                                           
T Consensus        17 ~DVlVIG~G~aGl~aA~~la~~G~~V~lvEK~~~~gG~s~~s~G~~~~~~~~~~~~~~~~d~~~~~~~d~~~~~~~~~d~   96 (308)
T d1y0pa2          17 VDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAKLAAGGMNAAWTDQQKAKKITDSPELMFEDTMKGGQNINDP   96 (308)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTGGGCCSCEECSSCHHHHHTTCCCCHHHHHHHHHHHTTTCSCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCCcceecCCCCccccchhhhhhhccchHHHHHHHHHhhhhhccch
Confidence            3699999999999999999999999999987654300                                           


Q ss_pred             -----------------------------------------------hHHHH---HHhccCCCcEEEcCceeEEEEecCC
Q 016820          243 -----------------------------------------------SKIMQ---NRALTNPKIDVIWNSVVLEAYGEGD  272 (382)
Q Consensus       243 -----------------------------------------------~~~~~---~~~l~~~gv~~~~~~~v~~i~~~~~  272 (382)
                                                                     ...+.   .+.+.+.|++++.++++.++..+++
T Consensus        97 ~lv~~~~~~~~~~i~~L~~~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~  176 (308)
T d1y0pa2          97 ALVKVLSSHSKDSVDWMTAMGADLTDVGMMGGASVNRAHRPTGGAGVGAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDK  176 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCCCEEECCTTCSSCCEEESTTTCCHHHHHHHHHHHHHHHTTCEEESSEEEEEEEECTT
T ss_pred             HHHHHHHHhhhHHHHHHHHcCCCccccccccccccccccccccccchHHHHHHHHHHHHHhccceEEEeeccchhhhhcc
Confidence                                                           00000   1123457999999999999888776


Q ss_pred             ceeeeeEEEEeccCCceEEEecCeEEEeeCC-CCChhhhc---------------------------ccccccCCCceee
Q 016820          273 KKVLGGLKVKNLVTGQVSDLKVSGLFFAIGH-EPATKFVD---------------------------GQLDLHSDGYIIT  324 (382)
Q Consensus       273 g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~-~p~~~~~~---------------------------~~~~~~~~g~i~v  324 (382)
                      |+ +.+|.+.+.. +....+.++.||+|||- ..+.....                           .+..+.+=-|++.
T Consensus       177 G~-V~Gv~~~~~~-~~~~~i~Ak~VVlAtGG~~~n~~~~~~~~p~~~~~~~~~~~~~tGdg~~ma~~aGa~l~~me~vq~  254 (308)
T d1y0pa2         177 GT-VKGILVKGMY-KGYYWVKADAVILATGGFAKNNERVAKLDPSLKGFISTNQPGAVGDGLDVAENAGGALKDMQYIDT  254 (308)
T ss_dssp             SC-EEEEEEEETT-TEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTCCBCSCTTCSSHHHHHHHHTTCCEECTTCBCT
T ss_pred             cc-cccccccccc-cceeEeecCeEEEccCcccccHHHHHHhccchhhhcccCCCcccCHHHHHHHHcCCCccCccceec
Confidence            64 7778887643 33467899999999984 33332221                           0001100012222


Q ss_pred             CCCC---CcCCCCceEEecccCCc-------hhhHHHHHHhhHHHHHHHHHHH
Q 016820          325 KPGT---THTSVPGVFAAGDVQDK-------KYRQAVTAAGTGCMAALEAEHY  367 (382)
Q Consensus       325 d~~~---~~t~~~~vya~GD~~~~-------~~~~~~~a~~~g~~aa~~i~~~  367 (382)
                      .+..   ..+..|++|++|.+.+.       ..........-|+.|+++++++
T Consensus       255 ~p~~~~~~~~~~~gl~a~G~~~~g~hg~nrlg~~~~~~~~~~g~~ag~~a~~~  307 (308)
T d1y0pa2         255 KAEVMNAKKQVIPGLYGAGEVTGGVHGANRLGGNAISDIITFGRLAGEEAAKY  307 (308)
T ss_dssp             TCEEECTTSCEEEEEEECSTTEESSSTTSCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCCcccceeehhhhhccccCcCCCchhhHHHHHHHHHHHHHHHHhc
Confidence            2211   12346899999998631       1234556777788888888765

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=98.56  E-value=3.9e-07  Score=79.66  Aligned_cols=157  Identities=14%  Similarity=0.122  Sum_probs=95.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc---------------------------------------ch--
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR---------------------------------------AS--  243 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~---------------------------------------~~--  243 (382)
                      .-+|+|||+|.+|+-+|..|.+.|.+++++++.+.+.                                       ..  
T Consensus         7 ~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~~p~~~e   86 (298)
T d1w4xa1           7 EVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYASQPE   86 (298)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCBHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccccCccch
Confidence            3479999999999999999999999999999876540                                       00  


Q ss_pred             -HHHHHHhccCCCc--EEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCC--CChhhhcccccccC
Q 016820          244 -KIMQNRALTNPKI--DVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHE--PATKFVDGQLDLHS  318 (382)
Q Consensus       244 -~~~~~~~l~~~gv--~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~--p~~~~~~~~~~~~~  318 (382)
                       ...++...++.++  .++++++|+++..+++.. .  -++..   .++....+|.+|.|+|+.  |..+.+. ++...-
T Consensus        87 ~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~-~--W~V~~---~~~~~~~~~~~i~atG~ls~~~~p~~~-~~~i~g  159 (298)
T d1w4xa1          87 ILRYINFVADKFDLRSGITFHTTVTAAAFDEATN-T--WTVDT---NHGDRIRARYLIMASGQLSDALTGALF-KIDIRG  159 (298)
T ss_dssp             HHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTT-E--EEEEE---TTCCEEEEEEEEECCCSCCCCTTHHHH-TSEEEC
T ss_pred             HHHHHHHHHHHcCCcccccCCcEEEEEEEecCCC-c--eeecc---ccccccccceEEEeecccccccCCccc-cccccc
Confidence             1112344555676  588899999998654321 2  33443   334678999999999974  4433332 222111


Q ss_pred             -CC---------ceeeCCCCCcCCCCceEEecccCC-chhh-HHHHHHhhHHHHHHHHHHHH
Q 016820          319 -DG---------YIITKPGTTHTSVPGVFAAGDVQD-KKYR-QAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       319 -~g---------~i~vd~~~~~t~~~~vya~GD~~~-~~~~-~~~~a~~~g~~aa~~i~~~l  368 (382)
                       +|         .+..--.....+.||+|.++-... .... ....+-.|+...++-|....
T Consensus       160 ~~g~~l~~~W~~~p~ty~G~~v~gfPN~f~~~Gp~s~~~~~~~~~~~e~q~~~i~~~i~~~~  221 (298)
T d1w4xa1         160 VGNVALKEKWAAGPRTYLGLSTAGFPNLFFIAGPGSPSALSNMLVSIEQHVEWVTDHIAYMF  221 (298)
T ss_dssp             GGGCBHHHHTTTSCCCBTTTBCTTSTTEEESSCTTSSGGGSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeeehhhchhhHHHHHHHhcCCCCeEEEecCCCCccccccHHHHHHHHHHHHHHHHHHHH
Confidence             11         111111122357899999744332 2122 33455666777776554433

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.5e-08  Score=88.37  Aligned_cols=42  Identities=31%  Similarity=0.328  Sum_probs=37.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCccee
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~  102 (382)
                      ++.+|+|||||++||+||+.|++.|++|+|+|    +...+||++.
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlE----a~~r~GGr~~   45 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLE----ARDRVGGRVA   45 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEEC----SSSSSBTTCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEe----CCCCCcccEE
Confidence            45789999999999999999999999999999    6668888654

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.48  E-value=4.9e-08  Score=84.07  Aligned_cols=40  Identities=23%  Similarity=0.408  Sum_probs=34.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEecccCCCCCCCccee
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFEGWMANDIAPGGQLT  102 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~~~~~~~~~gg~~~  102 (382)
                      +||+|||||++||++|+.|+++|+ +|+|+|    +...+||++.
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE----~~~~~GG~~~   41 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILE----ATDHIGGRMH   41 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEEC----SSSSSBTTSC
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEE----CCCCCCceEE
Confidence            489999999999999999999996 799999    5566777653

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=6.8e-08  Score=84.78  Aligned_cols=42  Identities=24%  Similarity=0.215  Sum_probs=37.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ++||+|||||++|+++|+.|++.|.+|+|+|    +...+||.+..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiE----k~~~iGG~~~t   42 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIE----KRNHIGGNAYT   42 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEEC----SSSSSSGGGCE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEE----CCCCcccceEE
Confidence            3799999999999999999999999999999    66788887754

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.39  E-value=2.1e-07  Score=73.76  Aligned_cols=113  Identities=19%  Similarity=0.217  Sum_probs=64.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecc------cCC-CCCCCcceecCCC-------c----ccCCCCCCCCC
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGW------MAN-DIAPGGQLTTTSD-------V----ENFPGFPQGIL  118 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~------~~~-~~~~gg~~~~~~~-------~----~~~~~~~~~~~  118 (382)
                      ..++|+|||||..|+.+|..+.++|.+++..-..      ... ....++.......       .    ........ ..
T Consensus        28 ~gkrVvVIGgG~~g~d~a~~~~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~  106 (162)
T d1ps9a2          28 VGNKVAIIGCGGIGFDTAMYLSQPGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKPGQ-GL  106 (162)
T ss_dssp             CCSEEEEECCHHHHHHHHHHHTCCSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCTTT-TS
T ss_pred             cCCceEEEcCchhHHHHHHHHHHcCCccceeHhhhhhhccCCcchhhhcccccccceeccccceEEEEEeccchhcc-cc
Confidence            4579999999999999999999999765443210      000 0000000000000       0    00000000 01


Q ss_pred             hHHHHHHHHHHHHHcCcEEEEe-eEEEEEecCCcEEEEECCe--EEEcCEEEEccCC
Q 016820          119 GGDLMDRCRNQSLRFGTQIFTE-TVSKVDFKSRPFKVFTDSK--SVLADTVIVATGA  172 (382)
Q Consensus       119 ~~~~~~~~~~~~~~~gi~~~~~-~v~~i~~~~~~~~v~~~~~--~~~~d~lvlA~G~  172 (382)
                      ............++.+++++.+ .+..++.  +.+.+..++.  .+.+|.||+|+|.
T Consensus       107 ~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~--~gv~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         107 GKTTGWIHRTTLLSRGVKMIPGVSYQKIDD--DGLHVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             CTTTHHHHHHHHHHTTCEEECSCEEEEEET--TEEEEEETTEEEEECCSEEEECCCE
T ss_pred             chhhhHHHHHHHhhCCeEEEeeeEEEEEcC--CCCEEecCCeEEEEECCEEEECCCC
Confidence            1223445566678889999888 6888874  3444544444  3899999999993

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.38  E-value=3.6e-06  Score=74.67  Aligned_cols=97  Identities=20%  Similarity=0.137  Sum_probs=69.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCCCCc-----------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRDSFR-----------------------------------------  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~~~~-----------------------------------------  241 (382)
                      -|+|+|||+|++|+.+|..|.+.+  .+|+++++++.+.                                         
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~y   83 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSPLY   83 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCCCC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccccc
Confidence            378999999999999999998766  5999999986531                                         


Q ss_pred             --------------------------c-hH---HHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCc-eE
Q 016820          242 --------------------------A-SK---IMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQ-VS  290 (382)
Q Consensus       242 --------------------------~-~~---~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~-~~  290 (382)
                                                . ..   ..++...+..+..++++++|++|+.++++   ..|++.+...++ ..
T Consensus        84 ~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~---w~Vt~~~~~~~~~~~  160 (335)
T d2gv8a1          84 RDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGS---WVVTYKGTKAGSPIS  160 (335)
T ss_dssp             TTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTE---EEEEEEESSTTCCEE
T ss_pred             hhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCE---EEEEEEecCCCCeEE
Confidence                                      0 00   11122334456778999999999998763   335565543332 34


Q ss_pred             EEecCeEEEeeCCC
Q 016820          291 DLKVSGLFFAIGHE  304 (382)
Q Consensus       291 ~~~~D~vi~~~G~~  304 (382)
                      ...+|.||+|+|..
T Consensus       161 ~~~~d~VI~AtG~~  174 (335)
T d2gv8a1         161 KDIFDAVSICNGHY  174 (335)
T ss_dssp             EEEESEEEECCCSS
T ss_pred             EEEeeEEEEccccc
Confidence            56799999999985

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=2e-06  Score=71.23  Aligned_cols=39  Identities=31%  Similarity=0.478  Sum_probs=31.7

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHh--------------------hcC-CEEEEEEeCCCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLT--------------------KYG-SKVYIIHRRDSF  240 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~--------------------~~g-~~v~~~~~~~~~  240 (382)
                      ...+++|+|||+|++|+++|..+.                    +.+ .+|+++.|+...
T Consensus        36 ~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RRg~~   95 (216)
T d1lqta1          36 DLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL   95 (216)
T ss_dssp             CCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             cccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEECChH
Confidence            345799999999999999998876                    344 579999988754

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=98.34  E-value=1.5e-07  Score=83.08  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=37.9

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      .++|+|||||++|+++|+.|++.|++|+|+|    +...+||.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viE----k~~~iGG~~~t   43 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIID----QRDHIGGNSYD   43 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEE----SSSSSSGGGCE
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEE----CCCCCcCeeeE
Confidence            4789999999999999999999999999999    67788997643

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.21  E-value=1.3e-07  Score=80.07  Aligned_cols=31  Identities=16%  Similarity=0.177  Sum_probs=27.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|||||++|+++|++|++.|++|+++|+
T Consensus         1 mkV~VIGaGi~GlstA~~L~~~G~~v~v~e~   31 (246)
T d1kifa1           1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLD   31 (246)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHTTTSSSCE
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCCceEEee
Confidence            3699999999999999999999998776664

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.19  E-value=1.4e-06  Score=72.90  Aligned_cols=146  Identities=15%  Similarity=0.154  Sum_probs=83.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCCc------------ch---HHHHHHhccCCCcEEEcCceeEEEEe
Q 016820          207 PLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSFR------------AS---KIMQNRALTNPKIDVIWNSVVLEAYG  269 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~~------------~~---~~~~~~~l~~~gv~~~~~~~v~~i~~  269 (382)
                      +|+|||+|+.|+.+|..|.+.  +++|+++++.+.+.            ..   .......+.+.|++++.+..+     
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-----   77 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEV-----   77 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCB-----
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEe-----
Confidence            799999999999999999765  67999999988761            01   111234567789999888765     


Q ss_pred             cCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCchhhH
Q 016820          270 EGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQ  349 (382)
Q Consensus       270 ~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~  349 (382)
                      ..+      +.+..      ..-.+|.+++++|..+.......+.......+............+..+..|+........
T Consensus        78 ~~~------~~~~~------l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v  145 (230)
T d1cjca2          78 GRD------VTVQE------LQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGV  145 (230)
T ss_dssp             TTT------BCHHH------HHHHSSEEEECCCCCEECCCCCTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCC
T ss_pred             Ccc------ccHHH------HHhhhceEEEEeecccccccccccccccccccccccccceeecccccccccccccCceeE
Confidence            111      11111      112589999999987644332212222221122221111223467788877754322222


Q ss_pred             HHHHHhhHHHHHHHHHHHHH
Q 016820          350 AVTAAGTGCMAALEAEHYLQ  369 (382)
Q Consensus       350 ~~~a~~~g~~aa~~i~~~l~  369 (382)
                      ...+...+..++........
T Consensus       146 vg~~~~~a~~~a~~~~~~~~  165 (230)
T d1cjca2         146 ITTTMTDSFLTGQILLQDLK  165 (230)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             EeccchhhHHHHHHHHHHhh
Confidence            33344445555555544444

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.18  E-value=1.1e-05  Score=62.63  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=28.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie~   89 (382)
                      ...+|||||||.+|+.+|..+.++|.+ |+++.+
T Consensus        44 ~~~kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~r   77 (153)
T d1gtea3          44 IRGAVIVLGAGDTAFDCATSALRCGARRVFLVFR   77 (153)
T ss_dssp             CCSEEEEECSSHHHHHHHHHHHHTTCSEEEEECS
T ss_pred             CCCEEEEECCChhHHHHHHHHHHcCCcceeEEEe
Confidence            346799999999999999999999876 778873

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.18  E-value=1e-05  Score=68.77  Aligned_cols=96  Identities=13%  Similarity=0.083  Sum_probs=69.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc--------c----------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR--------A----------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~--------~----------------------------------  242 (382)
                      .++|+|||+|+.|+.+|..|.+.|.+|+++++.+...        .                                  
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGVELDSISVPSSSMEYVDALTGE   83 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTCCGGGTCBCCCEEEEEETTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCCceEEEECccHHHHHHHcCcchhhhccCCCcceeEeccCCc
Confidence            5789999999999999999999999999999865420        0                                  


Q ss_pred             -------------hHHHH-HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChh
Q 016820          243 -------------SKIMQ-NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATK  308 (382)
Q Consensus       243 -------------~~~~~-~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~  308 (382)
                                   ...+. .......++.++.+..+.++..++++     +.+..   .++.++.+|+++.|.|......
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----v~v~~---~dG~~~~~d~~v~adG~~s~~r  155 (265)
T d2voua1          84 RVGSVPADWRFTSYDSIYGGLYELFGPERYHTSKCLVGLSQDSET-----VQMRF---SDGTKAEANWVIGADGGASVVR  155 (265)
T ss_dssp             EEEEEECCCCEEEHHHHHHHHHHHHCSTTEETTCCEEEEEECSSC-----EEEEE---TTSCEEEESEEEECCCTTCHHH
T ss_pred             eecccccccccchhHHHHHHHHHhcccceeecCcEEEEEEeeCCc-----eEEEE---CCCCEEEEEEEecccccccccc
Confidence                         00011 11112345677889999999987765     55554   3346789999999999876544

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.11  E-value=1.8e-05  Score=67.80  Aligned_cols=130  Identities=16%  Similarity=0.057  Sum_probs=82.8

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCCCCcch-----------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRDSFRAS-----------------------------------------  243 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~~~~~~-----------------------------------------  243 (382)
                      -+|+|||+|++|+-+|..|.+.| .+|+++++.+.+...                                         
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~i~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~   81 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVGINIQPAAVEALAELGLGPALAATAIPTHELRYIDQSGA   81 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCEEEECHHHHHHHHHTTCHHHHHHHSEEECEEEEECTTSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceEEEECHHHHHHHHHcCchhhhHhhhcccccceeEcCCCC
Confidence            47999999999999999999999 599999998765100                                         


Q ss_pred             --------------------------HHHHH-HhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCe
Q 016820          244 --------------------------KIMQN-RALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSG  296 (382)
Q Consensus       244 --------------------------~~~~~-~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~  296 (382)
                                                ..... ......++.+..+..+..+...+++   ..+.+.+ ..++..++.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---v~v~~~~-g~~~~~~~~ad~  157 (288)
T d3c96a1          82 TVWSEPRGVEAGNAYPQYSIHRGELQMILLAAVRERLGQQAVRTGLGVERIEERDGR---VLIGARD-GHGKPQALGADV  157 (288)
T ss_dssp             EEEEEECGGGGTCSSCEEEEEHHHHHHHHHHHHHHHHCTTSEEESEEEEEEEEETTE---EEEEEEE-TTSCEEEEEESE
T ss_pred             EEEeccccccccccCcccccchhhhHHHHHHHHHHhccCeeeecCcEEEEeeecCCc---EEEEEEc-CCCCeEEEeece
Confidence                                      00000 0112346777888888888887764   2345554 223456799999


Q ss_pred             EEEeeCCCCChhhhcccccccCCCceeeCCCCCcCCCCceEEecccCCc
Q 016820          297 LFFAIGHEPATKFVDGQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDK  345 (382)
Q Consensus       297 vi~~~G~~p~~~~~~~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~  345 (382)
                      ++.|-|......-.. ...     ..............++..+||+...
T Consensus       158 vi~ADG~~S~vr~~~-~~~-----~~~~~~~~~~~~~~~~~~~gda~h~  200 (288)
T d3c96a1         158 LVGADGIHSAVRAHL-HPD-----QRPLRDPLPHWGRGRITLLGDAAHL  200 (288)
T ss_dssp             EEECCCTTCHHHHHH-CTT-----CCCCCCCCSCCCBTTEEECTHHHHC
T ss_pred             eeccCCccceeeeee-ccc-----cccccccccccccCcceecccccce
Confidence            999999876543221 000     0000011223345689999999853

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=4.1e-05  Score=57.19  Aligned_cols=92  Identities=20%  Similarity=0.169  Sum_probs=69.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|-+++..|..|.+...+|+++-+.                       +.....+...+.+.+.....++.
T Consensus        26 ~~k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~-----------------------~~~~~~~~~~~~~~~~~~~~~i~   82 (126)
T d1trba2          26 RNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRR-----------------------DGFRAEKILIKRLMDKVENGNII   82 (126)
T ss_dssp             TTSEEEEECSSHHHHHHHHHHTTTSSEEEEECSS-----------------------SSCCCCHHHHHHHHHHHHTSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHhhcCCcEEEEeec-----------------------ccccchhHHHHHHHHhhccccee
Confidence            4689999999999999999999999999999841                       01123356677777777777888


Q ss_pred             EEEe-eEEEEEecCCcE---EEEE---CC--eEEEcCEEEEccC
Q 016820          137 IFTE-TVSKVDFKSRPF---KVFT---DS--KSVLADTVIVATG  171 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~~~---~v~~---~~--~~~~~d~lvlA~G  171 (382)
                      ++.+ .+.+|..++..+   ++..   ++  .++.+|-|+++.|
T Consensus        83 ~~~~~~v~~i~G~~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          83 LHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             EECSCEEEEEEECSSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             EecceEEEEEECCCCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            8887 688888776543   3332   11  3589999999987

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.98  E-value=1.8e-05  Score=68.40  Aligned_cols=33  Identities=30%  Similarity=0.480  Sum_probs=30.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .+|+|||+|++|+-+|..|.+.|.+|+++++.+
T Consensus         3 ~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~   35 (292)
T d1k0ia1           3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQT   35 (292)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            379999999999999999999999999999876

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=8.6e-06  Score=65.85  Aligned_cols=156  Identities=32%  Similarity=0.569  Sum_probs=115.6

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC------------c------chHHH---HHHhccCCCcEEEcCc
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF------------R------ASKIM---QNRALTNPKIDVIWNS  262 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~------------~------~~~~~---~~~~l~~~gv~~~~~~  262 (382)
                      +.++|+|||+|++|++.|.++.+.|.+|+++++.+..            .      ....+   ....+.+.++++..+ 
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   82 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFD-   82 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEECC-
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEecc-
Confidence            3568999999999999999999999999999865431            0      01111   123345577887754 


Q ss_pred             eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC-----hhhhcccccccCCCceeeCCC----CCcCCC
Q 016820          263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA-----TKFVDGQLDLHSDGYIITKPG----TTHTSV  333 (382)
Q Consensus       263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~-----~~~~~~~~~~~~~g~i~vd~~----~~~t~~  333 (382)
                      .+..+...++.     ..+..    ....+.++.+++++|..|.     ..++...+.++ +|++.+|+.    .++|+.
T Consensus        83 ~V~~~~~~~~~-----~~v~~----~~~~~~~~~viva~G~~~~~~~~~~~~~~~~~e~~-~g~i~~~~~~~~~~~~T~v  152 (190)
T d1trba1          83 HINKVDLQNRP-----FRLNG----DNGEYTCDALIIATGASARYHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSI  152 (190)
T ss_dssp             CEEEEECSSSS-----EEEEE----SSCEEEEEEEEECCCEEECCEEESCGGGTTTSCEE-TTEECCCCSSSSCTTBCSS
T ss_pred             eeEEEecCCCc-----EEEEE----eeeeEeeeeeeeecceeeeeecccceeecceEecC-CcEEEEecCCccccccccc
Confidence            68888777653     44443    1256899999999997654     33333234443 588988852    458999


Q ss_pred             CceEEecccCCchhhHHHHHHhhHHHHHHHHHHHHHH
Q 016820          334 PGVFAAGDVQDKKYRQAVTAAGTGCMAALEAEHYLQE  370 (382)
Q Consensus       334 ~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~~~l~~  370 (382)
                      |+||++|||.+..++++..|+.+|..||.++.+||..
T Consensus       153 ~gV~aaGDv~~~~~~q~i~Aag~G~~AA~~a~~yl~~  189 (190)
T d1trba1         153 PGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDG  189 (190)
T ss_dssp             TTEEECGGGGCSSSCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred             CeEEEeEEecCcceeEEEEEeccHHHHHHHHHHHHhh
Confidence            9999999999877789999999999999999999863

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.92  E-value=0.00015  Score=64.99  Aligned_cols=161  Identities=17%  Similarity=0.201  Sum_probs=103.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhh------cCCEEEEEEeCCCCcc-------------------------------------
Q 016820          206 KPLAVIGGGDSAMEEANFLTK------YGSKVYIIHRRDSFRA-------------------------------------  242 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~------~g~~v~~~~~~~~~~~-------------------------------------  242 (382)
                      -.|+|||+|+.|.-+|..|++      .|.+|.+++++..+..                                     
T Consensus        33 ~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~~Ggvl~~~~l~~l~p~~~~~~~~~~~~~~~~~~~  112 (380)
T d2gmha1          33 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAFEELFPDWKEKGAPLNTPVTEDRFG  112 (380)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCCCCCEECTHHHHHHCTTHHHHTCCCCEECCEEEEE
T ss_pred             CCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCccccccccHHHHHHHccchhhhccccccceecceEE
Confidence            479999999999999999987      7899999998765500                                     


Q ss_pred             -------------------------------hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec----cCC
Q 016820          243 -------------------------------SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL----VTG  287 (382)
Q Consensus       243 -------------------------------~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~----~~~  287 (382)
                                                     ..++ .+..+..++++..+..+.++..++++. +..+.....    ...
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~Ae~~g~~~~~~~~~~~~l~~~~g~-~~~~~~~~~~~~~~~~  190 (380)
T d2gmha1         113 ILTEKYRIPVPILPGLPMNNHGNYVVRLGHLVSWM-GEQAEALGVEVYPGYAAAEILFHEDGS-VKGIATNDVGIQKDGA  190 (380)
T ss_dssp             EECSSCEEECCCCTTSTTCCTTCEECCHHHHHHHH-HHHHHHTTCEEETTCCEEEEEECTTSS-EEEEEECCEEECTTSC
T ss_pred             EeeccccccccccCchhcccccceeehhhHHHHHH-HHHHhhccceeeeecceeeeeeccCCc-eeeccccccccccccc
Confidence                                           0111 123445788889999999888877653 111111110    000


Q ss_pred             ------ceEEEecCeEEEeeCCCCChh--hhc-ccc--cccC-CCceeeCCCCCcCCCCceEEecccCCc----hhhHHH
Q 016820          288 ------QVSDLKVSGLFFAIGHEPATK--FVD-GQL--DLHS-DGYIITKPGTTHTSVPGVFAAGDVQDK----KYRQAV  351 (382)
Q Consensus       288 ------~~~~~~~D~vi~~~G~~p~~~--~~~-~~~--~~~~-~g~i~vd~~~~~t~~~~vya~GD~~~~----~~~~~~  351 (382)
                            .......+..+++.|.+....  ++. ..+  .... .|+-.+    -+...|++..+||+++.    ..+-++
T Consensus       191 ~~~~~~~~~~~~~~~~v~~~G~~G~l~k~li~~~~l~~~~~~~~G~~si----p~l~~~G~lLVGDAAG~vnP~~g~GI~  266 (380)
T d2gmha1         191 PKTTFERGLELHAKVTIFAEGCHGHLAKQLYKKFDLRANCEPQGGFQSI----PKLTFPGGLLIGCSPGFMNVPKIKGTH  266 (380)
T ss_dssp             EEEEEECCCEEECSEEEECCCTTCHHHHHHHHHTTTTTTSCCCCGGGGC----CCCEETTEEECTTTTCCCBTTTTBCHH
T ss_pred             ccccccccccccccEEEEeeeCCCcchHHHHhhhhhccccccccccccc----cccccCCeeEEeccccccchhhcCCee
Confidence                  012345677788888765432  222 011  1111 222111    12346899999999973    245688


Q ss_pred             HHHhhHHHHHHHHHHHHHHcc
Q 016820          352 TAAGTGCMAALEAEHYLQEIG  372 (382)
Q Consensus       352 ~a~~~g~~aa~~i~~~l~~~~  372 (382)
                      .|+.+|+.||+.|.+.|...+
T Consensus       267 ~Am~SG~lAAeai~~al~~~~  287 (380)
T d2gmha1         267 TAMKSGTLAAESIFNQLTSEN  287 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCC
T ss_pred             eeeccHHHHHHHHHHHHHcCC
Confidence            999999999999999998654

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.92  E-value=2.9e-06  Score=76.28  Aligned_cols=117  Identities=10%  Similarity=0.109  Sum_probs=74.2

Q ss_pred             cCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhhhc-ccccc-------------c
Q 016820          252 TNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKFVD-GQLDL-------------H  317 (382)
Q Consensus       252 ~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~-~~~~~-------------~  317 (382)
                      .+.|++++.++.+.+|..++.+..+++|++.+..+++...+.++.||++.|..-.+.++. +++..             .
T Consensus       229 ~~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~~~g~~~~i~a~~vilaaGa~~tp~lL~~Sg~~~~~~~~~~~~~~~~~  308 (379)
T d2f5va1         229 PEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPNPTNPPELLP  308 (379)
T ss_dssp             EEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEEEEEEEEECSCHHHHHHHHHHTTSSCCSSCCTTSCCSSST
T ss_pred             cCCCCEEecCCEEEEEEEeCCCCEEEEEEEEECCCCEEEEEeceEEEeccCccCCHHHHhhcccccccccccccCccccc
Confidence            345789999999999998876666888888876667777889999999998865444332 11110             0


Q ss_pred             CC-----C------ceeeCCCCCcCCCCceEEecccCCch---hhHHHHHHhhHHHHHHHHHHHH
Q 016820          318 SD-----G------YIITKPGTTHTSVPGVFAAGDVQDKK---YRQAVTAAGTGCMAALEAEHYL  368 (382)
Q Consensus       318 ~~-----g------~i~vd~~~~~t~~~~vya~GD~~~~~---~~~~~~a~~~g~~aa~~i~~~l  368 (382)
                      ..     |      .-.||++.+.-..+|+|++|...=+.   .......+.-|..+|..|.+.+
T Consensus       309 ~~g~h~mG~~~~~~~~vvd~~~~v~g~~nlyv~d~sv~p~~~~~nPt~t~~alA~r~a~~i~~~~  373 (379)
T d2f5va1         309 SLGSHRMGFDEKEDNCCVNTDSRVFGFKNLFLGGCGNIPTAYGANPTLTAMSLAIKSCEYIKQNF  373 (379)
T ss_dssp             TTTBTCBCSCTTTTTCSBCTTCBBTTCSSEEECSGGGCCSCCCSCSHHHHHHHHHHHHHHHHHHC
T ss_pred             ccceeecccCCCCCCccCCCCCcccccCCEEEeCCcccCCccccCcHHHHHHHHHHHHHHHHHhh
Confidence            00     1      13577755555789999977644211   1122344445556666666543

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.91  E-value=4.3e-06  Score=74.49  Aligned_cols=34  Identities=29%  Similarity=0.401  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHH-----HcCCCeEEEecc
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAA-----RAELKPILFEGW   90 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~-----~~g~~v~lie~~   90 (382)
                      ..+||+|||||++|+++|..|+     +.|++|+|+|+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~   44 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKR   44 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCC
Confidence            4599999999999999999996     469999999963

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=97.89  E-value=2.6e-05  Score=66.97  Aligned_cols=48  Identities=13%  Similarity=0.097  Sum_probs=37.5

Q ss_pred             hccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          250 ALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       250 ~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      .+++.|++++.++.|.++..++++     +.+.+   .++ ++.+|.||+|+|.-.+
T Consensus       159 ~a~~~Gv~i~~~~~V~~i~~~~~~-----v~V~t---~~g-~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         159 LAEARGAKVLTHTRVEDFDISPDS-----VKIET---ANG-SYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHTTCEEECSCCEEEEEECSSC-----EEEEE---TTE-EEEEEEEEECCGGGHH
T ss_pred             ccccccccccCCcEEEEEEEECCE-----EEEEE---CCc-EEEcCEEEECCCCcch
Confidence            345688999999999999998875     56665   333 5899999999996543

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.87  E-value=2.1e-05  Score=68.44  Aligned_cols=47  Identities=9%  Similarity=0.079  Sum_probs=35.9

Q ss_pred             ccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCC
Q 016820          251 LTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEP  305 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p  305 (382)
                      +++.|++++.+++|+++..++++  +..|+  +   ++ .++.||.||+|+|.-.
T Consensus       158 a~~~gv~i~~~~~V~~i~~~~~~--v~~V~--T---~~-g~i~a~~VV~aaG~~s  204 (305)
T d1pj5a2         158 TESAGVTYRGSTTVTGIEQSGGR--VTGVQ--T---AD-GVIPADIVVSCAGFWG  204 (305)
T ss_dssp             HHHTTCEEECSCCEEEEEEETTE--EEEEE--E---TT-EEEECSEEEECCGGGH
T ss_pred             hhcccccccCCceEEEEEEeCCE--EEEEe--c---cc-eeEECCEEEEecchhH
Confidence            45679999999999999998864  33343  2   33 3699999999999754

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=97.85  E-value=2.3e-05  Score=67.01  Aligned_cols=32  Identities=25%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|+|||+|.+|+-+|.+|.+.|.+|+++++.+
T Consensus         6 DvvIIGaGi~Gls~A~~La~~G~~V~vlE~~~   37 (276)
T d1ryia1           6 EAVVIGGGIIGSAIAYYLAKENKNTALFESGT   37 (276)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            59999999999999999999999999999865

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.76  E-value=5.5e-05  Score=62.33  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=63.1

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC-CC-------------------------c----chHHHHHHhccCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD-SF-------------------------R----ASKIMQNRALTNPK  255 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~-~~-------------------------~----~~~~~~~~~l~~~g  255 (382)
                      -.|+|||+|+.|++.|.+.++.|.++.++..+. .+                         +    ....+.+.+....+
T Consensus         3 YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~~~n   82 (230)
T d2cula1           3 YQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEGLRP   82 (230)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHTCTT
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhhhcC
Confidence            369999999999999999999999999997642 11                         0    00112223334568


Q ss_pred             cEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          256 IDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       256 v~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      ++++.. .+.++..+++.  +.+|.+.+   +  ..+.+..||++||.--+
T Consensus        83 L~i~q~-~V~dli~e~~~--v~gV~t~~---G--~~~~AkaVILtTGTFL~  125 (230)
T d2cula1          83 LHLFQA-TATGLLLEGNR--VVGVRTWE---G--PPARGEKVVLAVGSFLG  125 (230)
T ss_dssp             EEEEEC-CEEEEEEETTE--EEEEEETT---S--CCEECSEEEECCTTCSS
T ss_pred             HHHHhc-cceeeEecccc--eeeEEecc---c--cEEEEeEEEEccCccee
Confidence            988855 45665555442  44455433   3  67999999999997543

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=97.71  E-value=1.2e-05  Score=72.22  Aligned_cols=35  Identities=23%  Similarity=0.266  Sum_probs=32.4

Q ss_pred             ccccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           55 QTLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        55 ~~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +...+||||||+|++|+.+|.+|++.|++|+|+|+
T Consensus         4 ~~~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEa   38 (370)
T d3coxa1           4 DGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM   38 (370)
T ss_dssp             TTCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCCCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeC
Confidence            34569999999999999999999999999999995

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.69  E-value=9.5e-05  Score=55.09  Aligned_cols=89  Identities=18%  Similarity=0.155  Sum_probs=62.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHH-cC
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLR-FG  134 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g  134 (382)
                      -..++|+|||+|.+++..|..|.+...+|+|+-+.                    +.+   ...+.+    .+.+.+ .+
T Consensus        28 ~~gk~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~--------------------~~~---~~~~~~----~~~~~~~~~   80 (126)
T d1fl2a2          28 FKGKRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA--------------------PEM---KADQVL----QDKLRSLKN   80 (126)
T ss_dssp             GBTCEEEEECCSHHHHHHHHHHHTTBSEEEEECSS--------------------SSC---CSCHHH----HHHHHTCTT
T ss_pred             cCCceEEEEeCCHHHHHHHHhhhccCCceEEEecc--------------------ccc---cccccc----ccccccccc
Confidence            35689999999999999999999999999999731                    011   111222    233333 46


Q ss_pred             cEEEEe-eEEEEEecCCcE---EEEE--CC--eEEEcCEEEEccC
Q 016820          135 TQIFTE-TVSKVDFKSRPF---KVFT--DS--KSVLADTVIVATG  171 (382)
Q Consensus       135 i~~~~~-~v~~i~~~~~~~---~v~~--~~--~~~~~d~lvlA~G  171 (382)
                      |+++.+ ++.++..+++.+   .+..  ++  .++.+|.|+++.|
T Consensus        81 I~v~~~~~v~~i~G~~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          81 VDIILNAQTTEVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             EEEESSEEEEEEEESSSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             eeEEcCcceEEEEccccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            999888 688888765543   2332  12  3599999999998

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=97.66  E-value=0.00011  Score=65.54  Aligned_cols=32  Identities=22%  Similarity=0.284  Sum_probs=29.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|||+|..|+-+|..|++.|.+|.++++++
T Consensus         6 DviIVGsG~aG~v~A~~La~~G~kVlvLEaG~   37 (379)
T d2f5va1           6 DVVIVGSGPIGCTYARELVGAGYKVAMFDIGE   37 (379)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEECcCHHHHHHHHHHhhCCCeEEEEecCC
Confidence            69999999999999999999999999999753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=97.64  E-value=1.7e-05  Score=71.08  Aligned_cols=63  Identities=16%  Similarity=0.084  Sum_probs=44.3

Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccC--CceEEEecCeEEEeeCCCCChhhh
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVT--GQVSDLKVSGLFFAIGHEPATKFV  310 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~--~~~~~~~~D~vi~~~G~~p~~~~~  310 (382)
                      ..+.+..+++++.++.|++|..++++.....++..+...  ....++.++.||+|.|.--.+.+|
T Consensus       226 ~~a~~~gn~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~~~~~~~~~i~Ak~VVLaAGai~Tp~LL  290 (367)
T d1n4wa1         226 AAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSLGSTELL  290 (367)
T ss_dssp             HHHHHTTSEEEEESEEEEEEEECTTSSEEEEEEEECTTCCEEEEEEEEEEEEEECSHHHHHHHHH
T ss_pred             HHHHhCCCeEEECCCEEEEEEEcCCCCEEEEEEEECCCCcceeEEEEecCEEEEecchhcCHHHH
Confidence            345556679999999999999988775555555543211  123568899999999987655554

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.60  E-value=7.1e-05  Score=60.32  Aligned_cols=92  Identities=12%  Similarity=0.145  Sum_probs=65.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc-----------------------chHHHHH---HhccCCCcEE
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR-----------------------ASKIMQN---RALTNPKIDV  258 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~-----------------------~~~~~~~---~~l~~~gv~~  258 (382)
                      .++|+|||+|++|+++|.++.+.|.++.++++.....                       ....+..   +..++.|+++
T Consensus         5 ~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~q~~~~g~~i   84 (192)
T d1vdca1           5 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGTTI   84 (192)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTCEE
T ss_pred             cceEEEECCCHHHHHHHHHHHHcCCcEEEEEeecccccccccccccchhhhccccccccccchHHHHHHHHHHHhhccee
Confidence            5789999999999999999999999999997554320                       0122221   2234568888


Q ss_pred             EcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCC
Q 016820          259 IWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       259 ~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                      ... .+..++..+++     ..+..    ......+|.+++++|....
T Consensus        85 ~~~-~V~~~~~~~~~-----~~v~~----~~~~~~~~~~~~a~g~~~~  122 (192)
T d1vdca1          85 FTE-TVTKVDFSSKP-----FKLFT----DSKAILADAVILAIGAVAK  122 (192)
T ss_dssp             ECC-CCCEEECSSSS-----EEEEC----SSEEEEEEEEEECCCEEEC
T ss_pred             eee-eEEecccccCc-----EEecc----cceeeeeeeEEEEeeeeec
Confidence            755 67788776654     34432    2356889999999998754

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.55  E-value=0.00012  Score=61.18  Aligned_cols=34  Identities=29%  Similarity=0.407  Sum_probs=31.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .-.|+|||+|..|+-+|..|++.|.+|+++++++
T Consensus         5 ~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~   38 (297)
T d2bcgg1           5 DYDVIVLGTGITECILSGLLSVDGKKVLHIDKQD   38 (297)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            3469999999999999999999999999999865

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=97.54  E-value=2.7e-05  Score=69.60  Aligned_cols=32  Identities=31%  Similarity=0.364  Sum_probs=30.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +||+||||+|++|+.+|.+|++.|.+|+|+|+
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEa   33 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLER   33 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEc
Confidence            58999999999999999999999999999995

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.52  E-value=1.7e-05  Score=66.22  Aligned_cols=86  Identities=17%  Similarity=0.186  Sum_probs=60.3

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcC-------CEEEEEEeCCCCcc---------------hHHHHHHhccCCCcEEEcCc
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYG-------SKVYIIHRRDSFRA---------------SKIMQNRALTNPKIDVIWNS  262 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g-------~~v~~~~~~~~~~~---------------~~~~~~~~l~~~gv~~~~~~  262 (382)
                      +.+|+|||+|++|+.+|.+|.+.|       .+|+++++.+.+.-               ........+.+.|++++++.
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~   81 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV   81 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence            468999999999999999999987       47999999886621               11112345677899998886


Q ss_pred             eeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCCh
Q 016820          263 VVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPAT  307 (382)
Q Consensus       263 ~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~  307 (382)
                      .+.     .+      +.++      .....+|.+++++|..+..
T Consensus        82 ~v~-----~~------~~~~------~~~~~~~~v~~atGa~~~~  109 (239)
T d1lqta2          82 VVG-----EH------VQPG------ELSERYDAVIYAVGAQSRG  109 (239)
T ss_dssp             CBT-----TT------BCHH------HHHHHSSEEEECCCCCEEC
T ss_pred             Eec-----cc------cchh------hhhccccceeeecCCCccc
Confidence            541     11      1111      1234689999999987543

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.52  E-value=0.00012  Score=62.01  Aligned_cols=36  Identities=22%  Similarity=0.400  Sum_probs=32.8

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ...++|||+|+.|+++|..+.++|.+|+++.+.+.+
T Consensus        42 ~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~l   77 (261)
T d1mo9a1          42 EYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFL   77 (261)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcc
Confidence            447999999999999999999999999999987765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=97.44  E-value=6.5e-05  Score=67.82  Aligned_cols=61  Identities=8%  Similarity=0.100  Sum_probs=42.0

Q ss_pred             HhccCCCcEEEcCceeEEEE--ecCCceeeeeEEEEeccCCceEEEecCe-EEEeeCCCCChhhh
Q 016820          249 RALTNPKIDVIWNSVVLEAY--GEGDKKVLGGLKVKNLVTGQVSDLKVSG-LFFAIGHEPATKFV  310 (382)
Q Consensus       249 ~~l~~~gv~~~~~~~v~~i~--~~~~g~~~~~v~~~~~~~~~~~~~~~D~-vi~~~G~~p~~~~~  310 (382)
                      ..+.+.+++++.++.+++|.  ...+|....+|++.+. .+...++.+.. ||+|.|..-.+.+|
T Consensus       239 p~~~r~nl~i~t~a~V~rIl~~~~~~g~ra~GV~~~~~-~g~~~~v~A~keVILaAGai~SP~LL  302 (391)
T d1gpea1         239 PNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTN-KAVNFDVFAKHEVLLAAGSAISPLIL  302 (391)
T ss_dssp             TTTTCTTEEEEESCEEEEEEEEEETTEEEEEEEEEEEE-TTEEEEEEEEEEEEECSCTTTHHHHH
T ss_pred             ccccchhhhhhccceeeEEeeeCCCCCceEEeeEEecC-CCeEEEEEeCCEEEEecchhcchHHH
Confidence            34567899999999999985  3445556777887652 23334677765 89999976555443

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.38  E-value=9.4e-05  Score=60.81  Aligned_cols=35  Identities=26%  Similarity=0.413  Sum_probs=32.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      -.++|||+|+.|+.+|.++.+.|.+|+++++.+.+
T Consensus         4 yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~   38 (221)
T d1dxla1           4 NDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGAL   38 (221)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSS
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCC
Confidence            47999999999999999999999999999987654

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=97.35  E-value=7e-05  Score=67.49  Aligned_cols=61  Identities=11%  Similarity=0.159  Sum_probs=42.1

Q ss_pred             HHhccCCCcEEEcCceeEEEEecCCc--eeeeeEEEEeccCCceEEEecCe-EEEeeCCCCChhh
Q 016820          248 NRALTNPKIDVIWNSVVLEAYGEGDK--KVLGGLKVKNLVTGQVSDLKVSG-LFFAIGHEPATKF  309 (382)
Q Consensus       248 ~~~l~~~gv~~~~~~~v~~i~~~~~g--~~~~~v~~~~~~~~~~~~~~~D~-vi~~~G~~p~~~~  309 (382)
                      ...+++.+++++.++.+++|.-++++  ....+|++.+ ..++..++.++. ||+|.|.--.+.+
T Consensus       232 ~p~~~~~nl~i~t~~~V~rI~~~~~~~~~ra~GV~~~~-~~g~~~~v~A~keVILsAGAi~SP~L  295 (385)
T d1cf3a1         232 LPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGT-HKGNTHNVYAKHEVLLAAGSAVSPTI  295 (385)
T ss_dssp             GGGTTCTTEEEEESCEEEEEEEECSSSSCEEEEEEEEE-ETTEEEEEEEEEEEEECSCTTTHHHH
T ss_pred             CchhcCCcccccCCceEEEEEEcCCCceeEEEEEEEEc-CCCCEEEEEeCCEEEEcCchhhCHHH
Confidence            34567789999999999999765543  2466677654 235556677765 8999997654443

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.29  E-value=3.8e-05  Score=64.12  Aligned_cols=39  Identities=21%  Similarity=0.340  Sum_probs=35.9

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ....++|+|||+|+.|+..|..|.+.|.+|+++++.+.+
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~   84 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI   84 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence            346799999999999999999999999999999988877

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=97.23  E-value=6.5e-05  Score=66.76  Aligned_cols=60  Identities=7%  Similarity=0.006  Sum_probs=39.7

Q ss_pred             ccCCCcEEEcCceeEEEEecC-CceeeeeEEEEeccCC-ceEEEec-CeEEEeeCCCCChhhh
Q 016820          251 LTNPKIDVIWNSVVLEAYGEG-DKKVLGGLKVKNLVTG-QVSDLKV-SGLFFAIGHEPATKFV  310 (382)
Q Consensus       251 l~~~gv~~~~~~~v~~i~~~~-~g~~~~~v~~~~~~~~-~~~~~~~-D~vi~~~G~~p~~~~~  310 (382)
                      ..+.+++++.++.++++.-++ .+...++|++.+.... ....+.+ ..||+|.|..-.+.+|
T Consensus       204 a~~~nl~i~~~~~V~rv~~~~~~g~~a~gV~~~~~~g~~~~~~v~a~~eVILsAGaI~TP~LL  266 (351)
T d1ju2a1         204 GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQLL  266 (351)
T ss_dssp             SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEEEEEEEEEEEEECCHHHHHHHHH
T ss_pred             chhhhhhhhccchhhceeeeccccceeeEEEEEeCCCceEEEEeecCcEEEEeCccccCHHHH
Confidence            457899999999999998754 3445777887653211 1122444 3599999887655544

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00029  Score=49.30  Aligned_cols=81  Identities=14%  Similarity=0.113  Sum_probs=57.3

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEE
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKV  281 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~  281 (382)
                      .+.+|+|+|+|.|-+|+.+|.+|.+.|.+|++++.+......     +.++ .++.++.+.       .           
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~-----~~~~-~~~~~~~~~-------~-----------   57 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGL-----DKLP-EAVERHTGS-------L-----------   57 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTG-----GGSC-TTSCEEESB-------C-----------
T ss_pred             CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhH-----HHHh-hccceeecc-------c-----------
Confidence            456899999999999999999999999999999987654322     1122 234333221       0           


Q ss_pred             EeccCCceEEEecCeEEEeeCCCCChhhhc
Q 016820          282 KNLVTGQVSDLKVSGLFFAIGHEPATKFVD  311 (382)
Q Consensus       282 ~~~~~~~~~~~~~D~vi~~~G~~p~~~~~~  311 (382)
                           .....-.+|.++.++|..++.+.+.
T Consensus        58 -----~~~~~~~~d~vi~SPGi~~~~~~~~   82 (93)
T d2jfga1          58 -----NDEWLMAADLIVASPGIALAHPSLS   82 (93)
T ss_dssp             -----CHHHHHHCSEEEECTTSCTTSHHHH
T ss_pred             -----chhhhccCCEEEECCCCCCCCHHHH
Confidence                 0111236799999999998887765

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.11  E-value=0.0012  Score=49.05  Aligned_cols=88  Identities=15%  Similarity=0.139  Sum_probs=59.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceecCCCcccCCCCCCCCChHHHHHHHHHHHHHcCcE
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTTTSDVENFPGFPQGILGGDLMDRCRNQSLRFGTQ  136 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~  136 (382)
                      ..++|+|||+|-+++..|..|++.-.+|+||-+.                    +.+   ...+.+.+.   .....+|+
T Consensus        33 rgk~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~--------------------~~~---ra~~~~~~~---l~~~~nI~   86 (130)
T d1vdca2          33 RNKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR--------------------DAF---RASKIMQQR---ALSNPKID   86 (130)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHTTTSSEEEEECSS--------------------SSC---CSCHHHHHH---HHTCTTEE
T ss_pred             CCCEEEEEcCchHHHHHHHHHhCCCCcEEEEEec--------------------ccc---ccchhhhhc---cccCCceE
Confidence            4689999999999999999999999999999741                    011   111223322   22444789


Q ss_pred             EEEe-eEEEEEecCC--c---EEEEE----CCeEEEcCEEEEcc
Q 016820          137 IFTE-TVSKVDFKSR--P---FKVFT----DSKSVLADTVIVAT  170 (382)
Q Consensus       137 ~~~~-~v~~i~~~~~--~---~~v~~----~~~~~~~d~lvlA~  170 (382)
                      ++.+ ++..|.-+++  .   +.+..    +..++.+|.|++|.
T Consensus        87 v~~~~~v~~i~Gd~~~~~v~~v~l~~~~tge~~~l~~dGvFVaI  130 (130)
T d1vdca2          87 VIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAI  130 (130)
T ss_dssp             EECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEECSEEEECS
T ss_pred             EEeccEEEEEEccCCcccEEEEEEEECCCCCEEEEECCEEEEEC
Confidence            9888 6888876543  2   23332    12459999999874

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.00033  Score=48.97  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|+|.|.+|+++|..|.++|.+|+++|.
T Consensus         4 ~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~   36 (93)
T d2jfga1           4 QGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDT   36 (93)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHHTTCCCEEEES
T ss_pred             CCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeC
Confidence            346899999999999999999999999999993

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.00  E-value=0.0004  Score=56.90  Aligned_cols=144  Identities=21%  Similarity=0.190  Sum_probs=97.6

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC--------cchHH-------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF--------RASKI-------------------------------  245 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~--------~~~~~-------------------------------  245 (382)
                      ...++|||+|+.|+++|..+.++|.+|+++++...=        ...+.                               
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~~~GG~c~~~gc~p~k~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~   84 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASPRLDI   84 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCCCCCH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcccccccccchhhhhhHHHHhhhhhccccccceEEeccceehH
Confidence            457999999999999999999999999999875310        00000                               


Q ss_pred             ----------------HHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEeccCCceEEEecCeEEEeeCCCCChhh
Q 016820          246 ----------------MQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNLVTGQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       246 ----------------~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~~~~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                                      .....+...+++++.+...  +. +.       ....    .....+.+|.++++||.+|....
T Consensus        85 ~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~~~--~~-~~-------~~~~----~~~~~i~a~~viiAtG~~p~~lp  150 (220)
T d1lvla1          85 GQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAK--VL-DG-------KQVE----VDGQRIQCEHLLLATGSSSVELP  150 (220)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEE--EE-ET-------TEEE----ETTEEEECSEEEECCCEEECCBT
T ss_pred             HHHhhhheeEEeeeccchhhhhccCceEEEEeeec--cc-Cc-------cccc----ccceeEeeceeeEcCCCCccccc
Confidence                            0011223344444433110  01 11       1111    22367999999999999986532


Q ss_pred             hc----------ccccccCCCceeeCCCCCcCCCCceEEecccCCchhhHHHHHHhhHHHHHHHHH
Q 016820          310 VD----------GQLDLHSDGYIITKPGTTHTSVPGVFAAGDVQDKKYRQAVTAAGTGCMAALEAE  365 (382)
Q Consensus       310 ~~----------~~~~~~~~g~i~vd~~~~~t~~~~vya~GD~~~~~~~~~~~a~~~g~~aa~~i~  365 (382)
                      ..          ..+. .++|++.||+ .++|+.|+|||+|||.+. +.+++.|..+|+.+|++|+
T Consensus       151 ~~~~~~~~~~~~~~~~-~~~g~i~vd~-~~~T~~~~I~A~GDv~~~-~~l~~~a~~~g~~~a~~i~  213 (220)
T d1lvla1         151 RRPRTKGFNLECLDLK-MNGAAIAIDE-RCQTSMHNVWAIGDVAGE-PMLAHRAMAQGEMVAEIIA  213 (220)
T ss_dssp             EEECCSSSSGGGSCCC-EETTEECCCT-TCBCSSTTEEECGGGGCS-SCCHHHHHHHHHHHHHHHT
T ss_pred             ccccccCCcceeeehh-hcCCcccccc-hhhcCCCCEEEEEEeCCc-ccchhhhhhhHHHHHHHHc
Confidence            11          1111 2478999998 899999999999999874 5799999999999998874

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00094  Score=55.21  Aligned_cols=32  Identities=22%  Similarity=0.390  Sum_probs=26.5

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC---CEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG---SKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g---~~v~~~~~~~  238 (382)
                      +|+|||+|+.|+..|.+.++++   .+|+++++..
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            6999999999999998877665   5789988643

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.0007  Score=55.93  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=29.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|||+|+.|+..|.++++.|.+|.+++..+
T Consensus         5 DviVIG~GpaGl~aA~~aa~~G~kV~viE~~~   36 (235)
T d1h6va1           5 DLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVT   36 (235)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGCCCEEEECCCC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence            59999999999999999999999999998544

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=96.73  E-value=0.008  Score=50.72  Aligned_cols=100  Identities=16%  Similarity=0.271  Sum_probs=66.7

Q ss_pred             CCcEEEEcCCchHHHHHHHHhh-cCCEEEEEEeCCCCcc-----------------------------------------
Q 016820          205 DKPLAVIGGGDSAMEEANFLTK-YGSKVYIIHRRDSFRA-----------------------------------------  242 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~-~g~~v~~~~~~~~~~~-----------------------------------------  242 (382)
                      ...|+|||+|++|+.+|..|++ .|.+|+++++++.+..                                         
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  112 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGVAYDEQDTYVVVKHA  112 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTCCCEECSSEEEESCH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceeecCEEcCHHHHhhhHHHHHHHcCCceecCCccceeccc
Confidence            3569999999999999999986 5999999998875410                                         


Q ss_pred             ---hHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec---------cCCceEEEecCeEEEeeCCCCC
Q 016820          243 ---SKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL---------VTGQVSDLKVSGLFFAIGHEPA  306 (382)
Q Consensus       243 ---~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~---------~~~~~~~~~~D~vi~~~G~~p~  306 (382)
                         ......+.....++.+..+..+..+...++.  +.++.....         ....+..+.++.++.++|....
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~  186 (278)
T d1rp0a1         113 ALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNR--VGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP  186 (278)
T ss_dssp             HHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTE--EEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCcceeeeecCCe--EEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence               0111123345667778878777777665542  333332210         1123367889999999997643

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.72  E-value=0.00061  Score=58.48  Aligned_cols=36  Identities=31%  Similarity=0.338  Sum_probs=33.5

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|+|||+|+.|+.+|..|.+.|.+|+++++++.+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~   36 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKA   36 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            489999999999999999999999999999987765

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=96.71  E-value=0.00063  Score=53.90  Aligned_cols=31  Identities=19%  Similarity=0.306  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++++|||+|..|+.+|..|++.|++|+++++
T Consensus         2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r   32 (184)
T d1bg6a2           2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDI   32 (184)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCEEEEEEC
Confidence            5799999999999999999999999999993

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.69  E-value=0.0034  Score=44.76  Aligned_cols=32  Identities=16%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..++|+|||+|.+|+-.|..|++...+++++.
T Consensus        31 ~gK~VlVVG~g~Sa~dia~~l~~~ak~v~~~~   62 (107)
T d2gv8a2          31 VGESVLVVGGASSANDLVRHLTPVAKHPIYQS   62 (107)
T ss_dssp             TTCCEEEECSSHHHHHHHHHHTTTSCSSEEEE
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHhcCEEEEEE
Confidence            45899999999999999999999988888877

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.69  E-value=0.0039  Score=50.58  Aligned_cols=33  Identities=24%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..++|||+|+.|+++|.++++.|.+|+++++..
T Consensus         4 ~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~   36 (223)
T d1ebda1           4 TETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN   36 (223)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC
Confidence            469999999999999999999999999998764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.66  E-value=0.00061  Score=55.82  Aligned_cols=33  Identities=24%  Similarity=0.270  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      -.++|||+|+.|+..|.++.+.|.+|.++++..
T Consensus         4 YDviIIGgGpAGl~aA~~aar~G~~V~viE~~~   36 (229)
T d3lada1           4 FDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYK   36 (229)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHTCCEEEEECCB
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCeEEEEeccc
Confidence            469999999999999999999999999998754

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=96.65  E-value=0.00056  Score=53.91  Aligned_cols=32  Identities=16%  Similarity=0.143  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+.|+|||+|..|..+|..|.+.|++|+|+|+
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr   33 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACR   33 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            36899999999999999999999999999995

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.56  E-value=0.00098  Score=52.14  Aligned_cols=32  Identities=22%  Similarity=0.184  Sum_probs=30.3

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +.+|+|||+|.+|+.+|..+.++|.+|+++|.
T Consensus        29 pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~   60 (183)
T d1l7da1          29 PARVLVFGVGVAGLQAIATAKRLGAVVMATDV   60 (183)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CcEEEEEcCcHHHHHHHHHHHHcCCEEEEEec
Confidence            57899999999999999999999999999993

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0015  Score=53.16  Aligned_cols=32  Identities=22%  Similarity=0.476  Sum_probs=29.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|||+|+.|+++|.++.+.|.+|+++++..
T Consensus         5 DviIIG~GpaG~~aA~~aar~G~kV~vIEk~~   36 (221)
T d3grsa1           5 DYLVIGGGSGGLASARRAAELGARAAVVESHK   36 (221)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEeccC
Confidence            59999999999999999999999999998754

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.56  E-value=0.0011  Score=51.11  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .+.+|+|||+|.+|+.++..++++|.+|+++|
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D   62 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFD   62 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEe
Confidence            45789999999999999999999999999999

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=96.51  E-value=0.0043  Score=54.67  Aligned_cols=32  Identities=28%  Similarity=0.342  Sum_probs=29.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|+|||+|..|.-+|..|++.|.+|.+++++.
T Consensus         4 ~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           4 PAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            58999999999999999999999999999863

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=96.47  E-value=0.0014  Score=56.82  Aligned_cols=36  Identities=31%  Similarity=0.451  Sum_probs=34.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .|+|+|||+|.+|+-+|..|.+.|.+|++++.++.+
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~i   37 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHI   37 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence            589999999999999999999999999999999887

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=96.45  E-value=0.0064  Score=53.61  Aligned_cols=31  Identities=32%  Similarity=0.335  Sum_probs=29.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      .++|||+|..|+-+|..|.+.|.+|++++++
T Consensus         9 dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG   39 (370)
T d3coxa1           9 PALVIGSGYGGAVAALRLTQAGIPTQIVEMG   39 (370)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999999999999975

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0015  Score=50.74  Aligned_cols=31  Identities=10%  Similarity=0.092  Sum_probs=29.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|||+|..|..+|..|++.|++|+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r   31 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALCKQGHEVQGWLR   31 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCceEEEEc
Confidence            4799999999999999999999999999995

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=96.39  E-value=0.0019  Score=53.81  Aligned_cols=36  Identities=28%  Similarity=0.386  Sum_probs=32.7

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...++|+|||+|..|+-+|..|.+.|.+|+++++..
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILARKGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence            346789999999999999999999999999999864

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.35  E-value=0.0016  Score=48.48  Aligned_cols=30  Identities=20%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|+|+|+|..|..+|..|.+.|++|+++|
T Consensus         1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid   30 (132)
T d1lssa_           1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLID   30 (132)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCcceec
Confidence            479999999999999999999999999999

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.33  E-value=0.012  Score=47.82  Aligned_cols=33  Identities=18%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|||+|-+|+-+|..+++.+.+++++-+
T Consensus        31 ~gK~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~   63 (235)
T d1w4xa2          31 SGQRVGVIGTGSSGIQVSPQIAKQAAELFVFQR   63 (235)
T ss_dssp             BTCEEEEECCSHHHHHHHHHHHHHBSEEEEEES
T ss_pred             CCCEEEEECCCccHHHHHHHHHhhhcccccccc
Confidence            458999999999999999999999998888863

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.30  E-value=0.002  Score=48.04  Aligned_cols=30  Identities=13%  Similarity=0.173  Sum_probs=28.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++++|||.|..|..+|..|.+.|++|+++|
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid   30 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVD   30 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEec
Confidence            479999999999999999999999999999

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.002  Score=56.12  Aligned_cols=37  Identities=27%  Similarity=0.510  Sum_probs=33.7

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +..+|+|||+|.+|+-+|..|.+.|.+|++++.++++
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRV   40 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            4567999999999999999999999999999987765

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=95.98  E-value=0.0024  Score=54.38  Aligned_cols=34  Identities=26%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      +|+|||+|..|+.+|..|.+.|.+|+++++++.+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            6999999999999999999999999999998765

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0037  Score=47.60  Aligned_cols=37  Identities=24%  Similarity=0.445  Sum_probs=33.3

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ..+++++|||||..|.+-+..|.+.|.+||++.+...
T Consensus        11 l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~~   47 (150)
T d1kyqa1          11 LKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDLH   47 (150)
T ss_dssp             CTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEEC
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            4689999999999999999999999999999976533

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0035  Score=49.96  Aligned_cols=32  Identities=25%  Similarity=0.274  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      -++|.|||+|.-|...|..+++.|++|+++|.
T Consensus         4 IkkvaViGaG~mG~~iA~~~a~~G~~V~l~D~   35 (192)
T d1f0ya2           4 VKHVTVIGGGLMGAGIAQVAAATGHTVVLVDQ   35 (192)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             eEEEEEECcCHHHHHHHHHHHhCCCcEEEEEC
Confidence            46899999999999999999999999999993

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.86  E-value=0.0024  Score=48.73  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=30.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|||||..|+.-|..|.+.|.+|+||.+
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap   44 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSP   44 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence            458999999999999999999999999999973

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=95.76  E-value=0.004  Score=49.31  Aligned_cols=32  Identities=13%  Similarity=0.134  Sum_probs=29.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      -++|.|||+|..|...|..+++.|++|+++|.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~   35 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDI   35 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEEC
Confidence            36799999999999999999999999999993

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.76  E-value=0.0031  Score=50.72  Aligned_cols=31  Identities=16%  Similarity=0.115  Sum_probs=29.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||.|..|+.+|..|++.|++|+.+|.
T Consensus         1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~   31 (202)
T d1mv8a2           1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDV   31 (202)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEECCCHhHHHHHHHHHhCCCcEEEEeC
Confidence            3699999999999999999999999999993

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.72  E-value=0.005  Score=44.32  Aligned_cols=34  Identities=18%  Similarity=0.106  Sum_probs=31.3

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      -..++|+|||+|..|..-|..|.+.|.+|+++++
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            3568999999999999999999999999999983

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.69  E-value=0.016  Score=41.53  Aligned_cols=52  Identities=19%  Similarity=0.314  Sum_probs=39.7

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEE
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVI  259 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~  259 (382)
                      ..+++|+|||+|.+|..-+..|.+.|.+|+++.....    ..+ ....+..+++++
T Consensus        10 l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~----~~~-~~~~~~~~i~~~   61 (113)
T d1pjqa1          10 LRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFI----PQF-TVWANEGMLTLV   61 (113)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCC----HHH-HHHHTTTSCEEE
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCC----hHH-HHHHhcCCceee
Confidence            3589999999999999999999999999999976543    233 233455556554

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.54  E-value=0.0048  Score=52.84  Aligned_cols=35  Identities=29%  Similarity=0.382  Sum_probs=32.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      .++|||+|.+|+-+|..|++.|.+|+++++++.+.
T Consensus         3 dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iG   37 (298)
T d1i8ta1           3 DYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIG   37 (298)
T ss_dssp             EEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSS
T ss_pred             cEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcc
Confidence            58999999999999999999999999999988874

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0076  Score=39.85  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +.|.|+|||--|-+++....++|+++.++++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp   32 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGL   32 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECT
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcC
Confidence            5799999999999999999999999999995

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=95.23  E-value=0.01  Score=46.20  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.9

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|+|+|+|+|..|..+|..|.+.|.+|+++.|..
T Consensus         2 ~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~   35 (182)
T d1e5qa1           2 TKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTL   35 (182)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCH
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCh
Confidence            5899999999999999999999999999999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.03  Score=42.32  Aligned_cols=31  Identities=10%  Similarity=0.086  Sum_probs=29.2

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      +-+++|+|.|..|..++..|.+.|.++++||
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId   33 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVIS   33 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEe
Confidence            3479999999999999999999999999999

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=95.12  E-value=0.01  Score=45.25  Aligned_cols=33  Identities=33%  Similarity=0.490  Sum_probs=29.2

Q ss_pred             cccccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           56 TLKTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        56 ~~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      .++++|+|||+|..|.++|+.|...++ +++|+|
T Consensus         5 ~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D   38 (154)
T d1pzga1           5 QRRKKVAMIGSGMIGGTMGYLCALRELADVVLYD   38 (154)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEEC
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEE
Confidence            356899999999999999999988875 788998

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.0085  Score=51.98  Aligned_cols=34  Identities=35%  Similarity=0.597  Sum_probs=31.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .|+|||+|.+|+-+|..|.+.|.+|+++++++.+
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~   34 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRV   34 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            4899999999999999999999999999987765

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=94.90  E-value=0.11  Score=45.78  Aligned_cols=33  Identities=27%  Similarity=0.308  Sum_probs=29.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~  238 (382)
                      -.++|||+|..|+-+|..|++.+ .+|.++++++
T Consensus        25 yD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~   58 (391)
T d1gpea1          25 YDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGF   58 (391)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSC
T ss_pred             eeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCC
Confidence            46999999999999999999988 6999999885

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=94.79  E-value=0.014  Score=44.14  Aligned_cols=32  Identities=16%  Similarity=0.277  Sum_probs=28.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ...+|.|||+|..|.++|+.|...+.  +++|+|
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~D   38 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLID   38 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            45689999999999999999999875  699998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=94.75  E-value=0.013  Score=44.07  Aligned_cols=31  Identities=19%  Similarity=0.362  Sum_probs=28.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcC--CCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAE--LKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie   88 (382)
                      .++|+|||+|..|.++|+.|+..|  .+++|+|
T Consensus         5 ~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D   37 (146)
T d1ez4a1           5 HQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVD   37 (146)
T ss_dssp             BCEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEee
Confidence            568999999999999999999987  4799999

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.68  E-value=0.014  Score=47.50  Aligned_cols=34  Identities=29%  Similarity=0.441  Sum_probs=31.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .++|||+|+.|+..|.++.+.|++|+++++.+.+
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~   41 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTL   41 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCS
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCC
Confidence            5999999999999999999999999999987765

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.68  E-value=0.012  Score=46.08  Aligned_cols=30  Identities=13%  Similarity=0.217  Sum_probs=28.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||+|.-|.++|..|++.|++|.++.
T Consensus         1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~   30 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLVDNGNEVRIWG   30 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            479999999999999999999999999996

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=94.56  E-value=0.013  Score=45.84  Aligned_cols=34  Identities=26%  Similarity=0.313  Sum_probs=31.4

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|++.|+|+|..|.-+|..|.+.|++|+++.|.+
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~   34 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDA   34 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            3789999999999999999999999999998864

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=94.55  E-value=0.016  Score=44.64  Aligned_cols=31  Identities=19%  Similarity=0.079  Sum_probs=29.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||.|.-|.++|..|++.|++|+++|+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~   31 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSR   31 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEEC
Confidence            3699999999999999999999999999995

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=94.53  E-value=0.019  Score=43.50  Aligned_cols=33  Identities=18%  Similarity=0.196  Sum_probs=30.6

Q ss_pred             ccccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|.||| .|.-|..+|..|++.|++|.++|+
T Consensus         8 ~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~   41 (152)
T d2pv7a2           8 DIHKIVIVGGYGKLGGLFARYLRASGYPISILDR   41 (152)
T ss_dssp             TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECT
T ss_pred             CCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccc
Confidence            457999999 699999999999999999999995

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.017  Score=46.94  Aligned_cols=35  Identities=20%  Similarity=0.374  Sum_probs=32.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      -.|+|||+|+.|+.+|.++.+.|.+|+++++++.+
T Consensus         6 yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~   40 (233)
T d1v59a1           6 HDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKL   40 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSS
T ss_pred             cCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCc
Confidence            46999999999999999999999999999987765

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=94.31  E-value=0.22  Score=43.62  Aligned_cols=32  Identities=25%  Similarity=0.348  Sum_probs=29.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~  238 (382)
                      .++|||+|..|+-+|..|.+.+ .+|.++++++
T Consensus        19 D~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~   51 (385)
T d1cf3a1          19 DYIIAGGGLTGLTTAARLTENPNISVLVIESGS   51 (385)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSTTCCEEEEESSC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCCeEEEECCCC
Confidence            6999999999999999999876 7999999875

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=94.31  E-value=0.011  Score=46.66  Aligned_cols=31  Identities=16%  Similarity=0.241  Sum_probs=29.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+|+|||+|.-|.++|..|++.|++|+|+.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r   38 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHM   38 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEe
Confidence            5799999999999999999999999999983

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.18  E-value=0.02  Score=43.06  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=27.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ++|+|||+|..|.++|+.|...|.  +++|+|
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   33 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFID   33 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEe
Confidence            589999999999999999998874  788888

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.028  Score=39.99  Aligned_cols=32  Identities=28%  Similarity=0.420  Sum_probs=30.1

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+|.|+|||.-|.++|..+.++|+++.++|+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~   42 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDR   42 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            35799999999999999999999999999995

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.10  E-value=0.016  Score=46.04  Aligned_cols=29  Identities=14%  Similarity=0.291  Sum_probs=26.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||.|..|+.+|..++ .|++|+.+|
T Consensus         1 MkI~ViGlG~vGl~~a~~~a-~g~~V~g~D   29 (196)
T d1dlja2           1 MKIAVAGSGYVGLSLGVLLS-LQNEVTIVD   29 (196)
T ss_dssp             CEEEEECCSHHHHHHHHHHT-TTSEEEEEC
T ss_pred             CEEEEECCChhHHHHHHHHH-CCCcEEEEE
Confidence            46999999999999998886 599999999

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=93.95  E-value=0.039  Score=42.06  Aligned_cols=32  Identities=22%  Similarity=0.351  Sum_probs=29.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ...+|.|||+|..|.++|+.|...|+  +++|+|
T Consensus        19 ~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD   52 (160)
T d1i0za1          19 PNNKITVVGVGQVGMACAISILGKSLADELALVD   52 (160)
T ss_dssp             CSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            34699999999999999999999986  799999

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.93  E-value=0.097  Score=37.31  Aligned_cols=32  Identities=16%  Similarity=0.333  Sum_probs=29.2

Q ss_pred             cccEEEECCc-----------HHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGSG-----------PAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG-----------~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+|||+|           +++..++..|++.|++++++..
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~   46 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNC   46 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEec
Confidence            4689999998           6899999999999999999984

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=93.93  E-value=0.025  Score=42.33  Aligned_cols=30  Identities=37%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ++|.|||+|..|.++|+.|+..+. +++++|
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D   32 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEe
Confidence            579999999999999999998875 888888

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=93.76  E-value=0.079  Score=38.25  Aligned_cols=33  Identities=18%  Similarity=0.253  Sum_probs=29.6

Q ss_pred             ccccEEEECCcH-----------HHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGP-----------AAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~-----------aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|||+|+           ++..++..|++.|++++++..
T Consensus         6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~   49 (127)
T d1a9xa3           6 DIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNS   49 (127)
T ss_dssp             SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             CCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecC
Confidence            457899999985           799999999999999999984

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.03  Score=43.24  Aligned_cols=33  Identities=12%  Similarity=0.162  Sum_probs=29.8

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|+|+|-++-++++.|.+.|.+++|+.+
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~i~I~nR   49 (170)
T d1nyta1          17 PGLRILLIGAGGASRGVLLPLLSLDCAVTITNR   49 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHhcccceEEEeccc
Confidence            347899999999999999999999999888874

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=93.66  E-value=0.034  Score=41.51  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=27.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      .+|+|||+|..|.++|+.|...+.  ++.|+|
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   33 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLID   33 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            479999999999999999999875  799999

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.62  E-value=0.027  Score=44.19  Aligned_cols=31  Identities=16%  Similarity=0.228  Sum_probs=28.2

Q ss_pred             ccEEEE-CCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCII-GSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvII-GaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|| |+|..|.++|..|++.|++|++..+
T Consensus         1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R   32 (212)
T d1jaya_           1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSR   32 (212)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTTTCEEEEEES
T ss_pred             CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEEC
Confidence            368999 6799999999999999999999984

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.62  E-value=0.033  Score=42.55  Aligned_cols=33  Identities=24%  Similarity=0.159  Sum_probs=30.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      +|+|+|+|..|.-++..|.+.|++|+++.|.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999988753

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=93.59  E-value=0.032  Score=42.97  Aligned_cols=31  Identities=23%  Similarity=0.255  Sum_probs=28.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..|+|+|+|+.|+.++..++.+|.+|+++|.
T Consensus        28 ~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~   58 (170)
T d1e3ja2          28 TTVLVIGAGPIGLVSVLAAKAYGAFVVCTAR   58 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEEcccccchhhHhhHhhhcccccccch
Confidence            4699999999999999999999999999993

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=93.56  E-value=0.035  Score=41.50  Aligned_cols=30  Identities=33%  Similarity=0.499  Sum_probs=27.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      .+|+|||+|..|.++|+.|...++  +++|+|
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D   33 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLED   33 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEE
Confidence            579999999999999999999875  789998

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.42  E-value=0.039  Score=42.41  Aligned_cols=30  Identities=17%  Similarity=0.273  Sum_probs=27.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|++|++++
T Consensus        29 ~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~   58 (168)
T d1piwa2          29 KKVGIVGLGGIGSMGTLISKAMGAETYVIS   58 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CEEEEECCCCcchhHHHHhhhccccccccc
Confidence            569999999999999999888999999999

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.23  E-value=0.031  Score=44.15  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ++|+|||+|..|..+|..++..|.+|+++++.+..
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~   39 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDI   39 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHH
Confidence            78999999999999999999999999999887643

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.07  E-value=0.084  Score=47.66  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=37.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEecccCCCCCCCcceec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEGWMANDIAPGGQLTT  103 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~  103 (382)
                      ..+||||+|-|..=.-+|..|++.|.+|+=+|    .....||.|..
T Consensus         5 ~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD----~N~yYGg~~aS   47 (491)
T d1vg0a1           5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVD----SRSYYGGNWAS   47 (491)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHHTTCCEEEEC----SSSSSCGGGCE
T ss_pred             CccCEEEECCChHHHHHHHHHHhcCCEEEEec----CCCcCCCcccc
Confidence            46999999999999999999999999999999    55567776653

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.99  E-value=0.048  Score=41.49  Aligned_cols=31  Identities=23%  Similarity=0.368  Sum_probs=28.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ..+|.|||+|..|.++|+.|...++  +++|+|
T Consensus        19 ~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D   51 (159)
T d2ldxa1          19 RCKITVVGVGDVGMACAISILLKGLADELALVD   51 (159)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTSCSEEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEe
Confidence            3579999999999999999999975  799998

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.046  Score=42.10  Aligned_cols=30  Identities=20%  Similarity=0.357  Sum_probs=27.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        28 d~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d   58 (171)
T d1pl8a2          28 HKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD   58 (171)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECCCccHHHHHHHHHHcCCceEEecc
Confidence            469999999999999999999998 688888

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.86  E-value=0.049  Score=41.69  Aligned_cols=31  Identities=29%  Similarity=0.279  Sum_probs=28.4

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..|+|+|+|+.|+.++..++..|.+|+.+++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~   59 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDI   59 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecc
Confidence            4699999999999999999999999999993

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=92.83  E-value=0.035  Score=40.80  Aligned_cols=48  Identities=23%  Similarity=0.246  Sum_probs=37.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEc
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIW  260 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  260 (382)
                      |+++|+|.|..|..++..|.+.|.+|++++..+.      ..+ .+.+.+..++.
T Consensus         1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~------~~~-~~~~~~~~~~~   48 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEE------KVN-AYASYATHAVI   48 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHH------HHH-HTTTTCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHH------HHH-HHHHhCCccee
Confidence            6799999999999999999999999999988642      222 34556665543

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=92.61  E-value=0.055  Score=40.31  Aligned_cols=30  Identities=27%  Similarity=0.463  Sum_probs=27.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie   88 (382)
                      ++|.|||+|..|.++|+.|...+  -+++|+|
T Consensus         1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~D   32 (142)
T d1guza1           1 MKITVIGAGNVGATTAFRLAEKQLARELVLLD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCceEEEec
Confidence            36999999999999999999987  4899998

>d1fcda2 c.3.1.5 (A:115-255) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.54  E-value=0.14  Score=37.97  Aligned_cols=75  Identities=19%  Similarity=0.133  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhcC--CEEEEEEeCCCCcc-------hHHHHHHhccCCCcEEEcCce--eEEEEecCCceeeeeEEEEecc
Q 016820          217 AMEEANFLTKYG--SKVYIIHRRDSFRA-------SKIMQNRALTNPKIDVIWNSV--VLEAYGEGDKKVLGGLKVKNLV  285 (382)
Q Consensus       217 a~e~a~~l~~~g--~~v~~~~~~~~~~~-------~~~~~~~~l~~~gv~~~~~~~--v~~i~~~~~g~~~~~v~~~~~~  285 (382)
                      ++.++.+|.+.|  .++.++...+....       ...+..+++++.||+++.+..  +.+++....       .+..  
T Consensus        55 a~l~~~~lr~~g~r~kv~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~~v~vd~~~~-------~~~~--  125 (141)
T d1fcda2          55 ASQVAYYLKAHKPMSKVIILDSSQTFSKQSQFSKGWERLYGFGTENAMIEWHPGPDSAVVKVDGGEM-------MVET--  125 (141)
T ss_dssp             HHHHHHHHGGGCSCCCEEEECSCSSCTTHHHHHHHHHHHHCSTTSSCSEEEECSSTTCEEEEEETTT-------EEEE--
T ss_pred             HHHHHHHHHHcCCCCcEEEEecCCCCccCCcccHHHHHHHHHHHHhcCceeeecCCceEEeecCCcE-------EEEe--
Confidence            444555666666  46777766654321       123344567789999998764  556666553       2223  


Q ss_pred             CCceEEEecCeEEEee
Q 016820          286 TGQVSDLKVSGLFFAI  301 (382)
Q Consensus       286 ~~~~~~~~~D~vi~~~  301 (382)
                       .++.++++|++++.+
T Consensus       126 -~~Ge~v~yD~l~vvP  140 (141)
T d1fcda2         126 -AFGDEFKADVINLIP  140 (141)
T ss_dssp             -TTCCEEECSEEEECC
T ss_pred             -CCCcEEeeeEEEeCC
Confidence             334679999998865

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.51  E-value=0.18  Score=40.63  Aligned_cols=23  Identities=22%  Similarity=0.211  Sum_probs=21.0

Q ss_pred             cccEEEECCcHHHHHHHHHHHHc
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARA   80 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~   80 (382)
                      .++|+|||+|-.++=+|..|.+.
T Consensus        39 gk~VvVIGgGNVAlD~aR~l~r~   61 (225)
T d1cjca1          39 CDTAVILGQGNVALDVARILLTP   61 (225)
T ss_dssp             SSEEEEESCSHHHHHHHHHHHSC
T ss_pred             CceEEEECCchhHHHHHHHHhcC
Confidence            47999999999999999999883

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.47  E-value=0.059  Score=41.37  Aligned_cols=33  Identities=21%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ..++|+|+|+|-++-++++.|.+.|. ++.|+.+
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR   49 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYAR   49 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecc
Confidence            35789999999999999999999997 6788773

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=92.44  E-value=0.045  Score=47.21  Aligned_cols=35  Identities=29%  Similarity=0.424  Sum_probs=30.9

Q ss_pred             CcEEEEcCCchHHHHHHHHh-----hcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLT-----KYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~-----~~g~~v~~~~~~~~~  240 (382)
                      -.|+|||+|++|+-+|..|+     +.|.+|+++++.+.+
T Consensus         8 yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           8 CDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            36999999999999999996     568999999988765

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=92.37  E-value=0.034  Score=43.62  Aligned_cols=35  Identities=20%  Similarity=0.156  Sum_probs=32.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      -++|+|||+|..|..+|..++..|.+|+++++.+.
T Consensus         4 I~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~   38 (186)
T d1wdka3           4 VKQAAVLGAGIMGGGIAYQSASKGTPILMKDINEH   38 (186)
T ss_dssp             CSSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHH
Confidence            47899999999999999999999999999998764

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.28  E-value=0.061  Score=40.20  Aligned_cols=30  Identities=30%  Similarity=0.496  Sum_probs=26.8

Q ss_pred             ccEEEECC-cHHHHHHHHHHHHcCC--CeEEEe
Q 016820           59 TKVCIIGS-GPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        59 ~~vvIIGa-G~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ++|.|||+ |..|.++|+.|...+.  ++.|+|
T Consensus         1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D   33 (145)
T d1hyea1           1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIG   33 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEE
T ss_pred             CEEEEECCCChHHHHHHHHHHhCCccccccccc
Confidence            36999996 9999999999999884  899998

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.06  E-value=0.071  Score=40.86  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=28.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|+++++++
T Consensus        32 ~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~   61 (168)
T d1uufa2          32 KKVGVVGIGGLGHMGIKLAHAMGAHVVAFT   61 (168)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEeccchHHHHHHHHhhcccccchhhc
Confidence            579999999999999999999999999998

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.95  E-value=0.16  Score=40.52  Aligned_cols=21  Identities=24%  Similarity=0.322  Sum_probs=19.3

Q ss_pred             cccEEEECCcHHHHHHHHHHH
Q 016820           58 KTKVCIIGSGPAAHTAAIYAA   78 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~   78 (382)
                      .++|+|||+|-.++=+|..|.
T Consensus        39 gk~VvVIGgGNvAlD~AR~ll   59 (216)
T d1lqta1          39 GARAVVIGNGNVALDVARILL   59 (216)
T ss_dssp             SSEEEEECCSHHHHHHHHHHH
T ss_pred             CceEEEECCCchhHhhhhhhc
Confidence            478999999999999999887

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.91  E-value=0.067  Score=41.61  Aligned_cols=31  Identities=26%  Similarity=0.395  Sum_probs=27.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ..|+|+|+|+.|+.++..++..|+ +|+++|.
T Consensus        30 ~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~   61 (182)
T d1vj0a2          30 KTVVIQGAGPLGLFGVVIARSLGAENVIVIAG   61 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBSEEEEEES
T ss_pred             CEEEEECCCccchhheeccccccccccccccc
Confidence            579999999999999999999998 6889983

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.77  E-value=0.082  Score=40.09  Aligned_cols=31  Identities=16%  Similarity=0.123  Sum_probs=29.7

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      -+.++|+|=|..|-.+|..|+.+|.+|+++|
T Consensus        24 Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e   54 (163)
T d1li4a1          24 GKVAVVAGYGDVGKGCAQALRGFGARVIITE   54 (163)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCEEEEeccccccHHHHHHHHhCCCeeEeee
Confidence            4689999999999999999999999999999

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.49  E-value=0.065  Score=45.61  Aligned_cols=36  Identities=25%  Similarity=0.338  Sum_probs=32.0

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhc--CCEEEEEEeCCCC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKY--GSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~--g~~v~~~~~~~~~  240 (382)
                      ...|+|||+|+.|+.+|.+|.+.  |.+|+++++.+.+
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            46799999999999999999864  8999999988765

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=91.49  E-value=0.04  Score=43.38  Aligned_cols=33  Identities=24%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ++|+|+|+|..|.-+|..|.+.|++|+++.|.+
T Consensus         8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~   40 (189)
T d1n1ea2           8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNE   40 (189)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCH
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecH
Confidence            479999999999999999999999999998764

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.47  E-value=0.089  Score=41.64  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             cccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+|+| .|..|..++.+|.+.|++|+++.+
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R   35 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVR   35 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEc
Confidence            46799999 599999999999999999999985

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=91.29  E-value=0.092  Score=34.39  Aligned_cols=36  Identities=17%  Similarity=0.137  Sum_probs=32.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      |+|.|+|+|..|..++..-.++|.++++++..+..+
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            579999999999999999999999999998776543

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.29  E-value=0.094  Score=40.47  Aligned_cols=30  Identities=20%  Similarity=0.147  Sum_probs=27.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d   59 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVG   59 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEEC
T ss_pred             CEEEEEcCCcchhhhhhhhhccccccccccc
Confidence            479999999999999999999997 688888

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.21  E-value=0.09  Score=39.06  Aligned_cols=30  Identities=20%  Similarity=0.224  Sum_probs=26.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      ++|.|||+|..|.++|+.|...+.  ++.|+|
T Consensus         1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~D   32 (142)
T d1ojua1           1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVD   32 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCcCceEEEEe
Confidence            479999999999999999998874  689998

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=91.01  E-value=0.098  Score=38.76  Aligned_cols=30  Identities=20%  Similarity=0.299  Sum_probs=26.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC--CCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE--LKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g--~~v~lie   88 (382)
                      ++|.|||+|..|.++|+.|...+  -++.|+|
T Consensus         1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~D   32 (140)
T d1a5za1           1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLID   32 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEe
Confidence            37999999999999999998886  4788888

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=90.93  E-value=0.1  Score=38.07  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=30.0

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|+|+|.|..|..++..|.+.|.+|++++..+
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999998864

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=90.79  E-value=0.084  Score=45.21  Aligned_cols=32  Identities=22%  Similarity=0.255  Sum_probs=29.6

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .|+|||+|..|+-.|..+++.|.+|.++...+
T Consensus         7 DVvVIG~G~AGl~AAl~aa~~G~~V~liEK~~   38 (336)
T d2bs2a2           7 DSLVIGGGLAGLRAAVATQQKGLSTIVLSLIP   38 (336)
T ss_dssp             SEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            59999999999999999999999999998654

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.30  E-value=0.28  Score=40.89  Aligned_cols=56  Identities=14%  Similarity=0.210  Sum_probs=40.1

Q ss_pred             CCcEEEEcC-CchHHHHHHHHhhcCCEEEEEEeCCCCcchH-HHHHHhccCCCcEEEc
Q 016820          205 DKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDSFRASK-IMQNRALTNPKIDVIW  260 (382)
Q Consensus       205 ~~~v~VvG~-G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~-~~~~~~l~~~gv~~~~  260 (382)
                      .++|+|.|+ |.+|..++..|.+.|++|+.+.|........ ......+...+++++.
T Consensus         3 k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~   60 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIE   60 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEEC
T ss_pred             CCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEE
Confidence            467999996 9999999999999999999998876543221 1112334556676653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.28  E-value=0.1  Score=42.75  Aligned_cols=32  Identities=28%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ...+|+|||+|..|..+|..|++.|. +++|+|
T Consensus        29 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD   61 (247)
T d1jw9b_          29 KDSRVLIVGLGGLGCAASQYLASAGVGNLTLLD   61 (247)
T ss_dssp             HHCEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             hCCCEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence            45799999999999999999999997 788888

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.27  E-value=0.22  Score=35.04  Aligned_cols=37  Identities=19%  Similarity=0.259  Sum_probs=33.1

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCc
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFR  241 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~  241 (382)
                      ..+|.|+|+|..|..++....++|.++.++++.+.-+
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~~P   47 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYADAP   47 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTTCG
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCCCc
Confidence            3579999999999999999999999999999877654

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.21  E-value=0.13  Score=40.37  Aligned_cols=30  Identities=27%  Similarity=0.294  Sum_probs=25.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|. +|+++|
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d   57 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGD   57 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeec
Confidence            479999999999999999988887 566777

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=90.13  E-value=0.12  Score=43.32  Aligned_cols=33  Identities=15%  Similarity=0.134  Sum_probs=29.7

Q ss_pred             ccccEEEECC-cHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGS-GPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGa-G~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++.+|+|+|| |..|..++.+|.+.|++|+++.+
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R   35 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFR   35 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence            3567999996 99999999999999999999984

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=90.10  E-value=0.17  Score=38.94  Aligned_cols=31  Identities=10%  Similarity=0.172  Sum_probs=29.5

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .+|-|||-|.-|..+|..|.+.|++|.++++
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr   33 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNR   33 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcC
Confidence            5799999999999999999999999999994

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=90.07  E-value=0.17  Score=39.01  Aligned_cols=31  Identities=23%  Similarity=0.335  Sum_probs=29.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|-|||-|.-|..+|..|.+.|++|.++++
T Consensus         2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr   32 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNR   32 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECS
T ss_pred             CEEEEEeehHHHHHHHHHHHHCCCeEEEEEC
Confidence            4799999999999999999999999999994

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=90.02  E-value=0.12  Score=39.30  Aligned_cols=30  Identities=20%  Similarity=0.213  Sum_probs=28.5

Q ss_pred             cEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +|-|||-|.-|..+|..|.+.|++|+++++
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~   31 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDR   31 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeC
Confidence            589999999999999999999999999993

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.97  E-value=0.11  Score=39.47  Aligned_cols=30  Identities=30%  Similarity=0.387  Sum_probs=27.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|.+|++++
T Consensus        29 ~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~   58 (168)
T d1rjwa2          29 EWVAIYGIGGLGHVAVQYAKAMGLNVVAVD   58 (168)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEEC
T ss_pred             CEEEEeecccchhhhhHHHhcCCCeEeccC
Confidence            468999999999999999999999999888

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=89.95  E-value=0.16  Score=39.11  Aligned_cols=30  Identities=20%  Similarity=0.203  Sum_probs=25.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCC-eEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELK-PILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|.+ |++.|
T Consensus        30 ~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d   60 (174)
T d1e3ia2          30 STCAVFGLGCVGLSAIIGCKIAGASRIIAID   60 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCChHHHHHHHHHHHhCCceeeeec
Confidence            4699999999999999999999986 44555

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.88  E-value=0.14  Score=39.29  Aligned_cols=30  Identities=17%  Similarity=0.163  Sum_probs=26.2

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      .+|+|+|+|+.|+.++..++..|.+++++.
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~   59 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAV   59 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeee
Confidence            469999999999999999999998876653

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=89.87  E-value=0.16  Score=38.02  Aligned_cols=30  Identities=27%  Similarity=0.512  Sum_probs=26.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      .+|.|||+|..|.++|+.|.+.++ ++.|+|
T Consensus         4 ~KI~IIGaG~VG~~~a~~l~~~~l~el~L~D   34 (150)
T d1t2da1           4 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFD   34 (150)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence            579999999999999998888763 677888

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.76  E-value=0.15  Score=39.36  Aligned_cols=30  Identities=13%  Similarity=0.190  Sum_probs=27.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++.+|. +|+.+|
T Consensus        31 ~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd   61 (176)
T d1d1ta2          31 STCVVFGLGGVGLSVIMGCKSAGASRIIGID   61 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceEEEec
Confidence            359999999999999999999995 688888

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=89.74  E-value=0.15  Score=38.42  Aligned_cols=31  Identities=19%  Similarity=0.133  Sum_probs=29.8

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      -+.++|+|=|+.|-.+|..|+.+|.+|+++|
T Consensus        23 Gk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E   53 (163)
T d1v8ba1          23 GKIVVICGYGDVGKGCASSMKGLGARVYITE   53 (163)
T ss_dssp             TSEEEEECCSHHHHHHHHHHHHHTCEEEEEC
T ss_pred             CCEEEEecccccchhHHHHHHhCCCEEEEEe
Confidence            4789999999999999999999999999999

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=89.71  E-value=0.28  Score=32.94  Aligned_cols=75  Identities=12%  Similarity=0.022  Sum_probs=51.9

Q ss_pred             CcEEEEcCCchHHH-HHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEEEEec
Q 016820          206 KPLAVIGGGDSAME-EANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLKVKNL  284 (382)
Q Consensus       206 ~~v~VvG~G~~a~e-~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~~~~~  284 (382)
                      .+|-++|-|-+||. +|..|.+.|.+|+-.++.+.     ... +.|++.|++++.+...                    
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~-----~~t-~~L~~~Gi~i~~gh~~--------------------   55 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEET-----ERT-AYLRKLGIPIFVPHSA--------------------   55 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCC-----HHH-HHHHHTTCCEESSCCT--------------------
T ss_pred             cEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCC-----hhH-HHHHHCCCeEEeeecc--------------------
Confidence            47889998888874 58999999999998876542     222 3477789988754321                    


Q ss_pred             cCCceEEEecCeEEEeeCCCCChhhh
Q 016820          285 VTGQVSDLKVSGLFFAIGHEPATKFV  310 (382)
Q Consensus       285 ~~~~~~~~~~D~vi~~~G~~p~~~~~  310 (382)
                        .  ..-..|.||++++...+.+.+
T Consensus        56 --~--~i~~~d~vV~SsAI~~~npel   77 (89)
T d1j6ua1          56 --D--NWYDPDLVIKTPAVRDDNPEI   77 (89)
T ss_dssp             --T--SCCCCSEEEECTTCCTTCHHH
T ss_pred             --c--ccCCCCEEEEecCcCCCCHHH
Confidence              0  012468899988887665543

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=89.35  E-value=0.15  Score=42.43  Aligned_cols=32  Identities=16%  Similarity=0.252  Sum_probs=29.8

Q ss_pred             cccEEEECC-cHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIGS-GPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGa-G~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +++|+|+|| |..|-.++..|.+.|++|+++.+
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R   35 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVR   35 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEEC
Confidence            578999996 99999999999999999999985

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.32  E-value=0.18  Score=38.43  Aligned_cols=31  Identities=23%  Similarity=0.197  Sum_probs=26.6

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC--CeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL--KPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~--~v~lie~   89 (382)
                      ++|.|||.|..|.+.|..|.+.|+  +|..+|+
T Consensus         2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~   34 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDI   34 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECS
T ss_pred             CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEEC
Confidence            369999999999999999999986  5666774

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.28  E-value=0.15  Score=38.75  Aligned_cols=31  Identities=19%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|.|||-|.-|...|..|.+.|++|.++|+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~   32 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDL   32 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECS
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEEC
Confidence            4699999999999999999999999999994

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=89.14  E-value=0.2  Score=39.16  Aligned_cols=33  Identities=18%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             ccccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.++|.| +|..|..+|..|+++|.+|+++++
T Consensus        22 ~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r   55 (191)
T d1luaa1          22 KGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGR   55 (191)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHhhccchhhccc
Confidence            457889998 699999999999999999999984

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.99  E-value=0.15  Score=38.18  Aligned_cols=30  Identities=23%  Similarity=0.174  Sum_probs=27.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||.|..|..+|..|.+.|+++++++
T Consensus         1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~   30 (152)
T d1i36a2           1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSL   30 (152)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEECC
T ss_pred             CEEEEEcHHHHHHHHHHHHHHCCCeEEEEc
Confidence            369999999999999999999999998887

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.23  Score=37.98  Aligned_cols=37  Identities=22%  Similarity=0.167  Sum_probs=32.4

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+++|+|+|+|-+|--++..|.+.|.+|+++.|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~   51 (170)
T d1nyta1          15 IRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTV   51 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchH
Confidence            3467999999999999999999999999999887754

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.91  E-value=0.16  Score=39.25  Aligned_cols=32  Identities=19%  Similarity=0.205  Sum_probs=29.3

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|.|+|+|..|.-+|..|.+.|.+|+++.|..
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r~~   33 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGTEF   33 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECCGG
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEecc
Confidence            68999999999999999999999999987743

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.85  E-value=0.027  Score=45.82  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCC------EEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGS------KVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~------~v~~~~~~~  238 (382)
                      +|+|||+|.+|+-.|..|.+.|.      +++++.+..
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~~~~~   39 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVYADRF   39 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESCC
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeecccCC
Confidence            69999999999999999999885      566665543

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.71  E-value=0.15  Score=37.81  Aligned_cols=29  Identities=21%  Similarity=0.510  Sum_probs=25.8

Q ss_pred             cEEEECC-cHHHHHHHHHHHHcCC--CeEEEe
Q 016820           60 KVCIIGS-GPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        60 ~vvIIGa-G~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      +|+|||| |..|.++|+.|...+.  +++|+|
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiD   33 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYD   33 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEE
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEe
Confidence            6999996 9999999999998874  588888

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.55  E-value=0.18  Score=38.99  Aligned_cols=32  Identities=25%  Similarity=0.382  Sum_probs=29.3

Q ss_pred             cEEEE-cCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVI-GGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~Vv-G~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|+|+ |+|..|..+|..|.+.|++|++..|++
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~~   34 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRRE   34 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            58999 679999999999999999999999875

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.43  E-value=0.17  Score=38.87  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=29.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|+|+|-++-++++.|.+.+.+++++.+
T Consensus        17 ~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR   49 (171)
T d1p77a1          17 PNQHVLILGAGGATKGVLLPLLQAQQNIVLANR   49 (171)
T ss_dssp             TTCEEEEECCSHHHHTTHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccCceeeeccc
Confidence            346899999999999999999998889999984

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=88.27  E-value=0.32  Score=36.87  Aligned_cols=35  Identities=23%  Similarity=0.395  Sum_probs=32.3

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ++.+|+|+|+|..|...+....++|.+|++++.+.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~   65 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV   65 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcH
Confidence            46899999999999999999999999999998764

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=88.14  E-value=0.24  Score=36.58  Aligned_cols=29  Identities=21%  Similarity=0.462  Sum_probs=25.8

Q ss_pred             cEEEEC-CcHHHHHHHHHHHHcCC--CeEEEe
Q 016820           60 KVCIIG-SGPAAHTAAIYAARAEL--KPILFE   88 (382)
Q Consensus        60 ~vvIIG-aG~aGl~~A~~l~~~g~--~v~lie   88 (382)
                      +|.||| +|..|.++|+.|...++  ++.|+|
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~D   33 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVD   33 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEe
Confidence            689999 69999999999999875  688888

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=88.04  E-value=0.26  Score=37.19  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=28.1

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCC-eEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELK-PILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie   88 (382)
                      ..+.|+|||+|-.|-.++..|...|++ ++++-
T Consensus        23 ~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~n   55 (159)
T d1gpja2          23 HDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVAN   55 (159)
T ss_dssp             TTCEEEEESCCHHHHHHHHHHHHHCCSEEEEEC
T ss_pred             ccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEc
Confidence            457899999999999999999999985 66666

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=87.88  E-value=0.19  Score=43.53  Aligned_cols=32  Identities=25%  Similarity=0.495  Sum_probs=29.9

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      .++|||+|..|+-+|..|.+.|.+|.++++++
T Consensus         4 D~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           4 DYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            58999999999999999999999999999874

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.37  Score=35.84  Aligned_cols=54  Identities=19%  Similarity=0.084  Sum_probs=39.2

Q ss_pred             CCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcC
Q 016820          205 DKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWN  261 (382)
Q Consensus       205 ~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~  261 (382)
                      ..+++|+|.|..|..++..|.+.+.+++++...+..  ..... +.+...|+.++.+
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~--~~~~~-~~~~~~~~~vi~G   56 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPED--DIKQL-EQRLGDNADVIPG   56 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHH--HHHHH-HHHHCTTCEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchh--HHHHH-HHhhcCCcEEEEc
Confidence            457999999999999999999999999999876532  11111 2234467777654

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=87.78  E-value=0.43  Score=32.48  Aligned_cols=78  Identities=14%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             CCCCCcEEEEcCCchHHHH-HHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEcCceeEEEEecCCceeeeeEE
Q 016820          202 IFRDKPLAVIGGGDSAMEE-ANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIWNSVVLEAYGEGDKKVLGGLK  280 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~-a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~~i~~~~~g~~~~~v~  280 (382)
                      ....+++-++|-|-+|+.- |..|.+.|.+|+-.+.....    ..  +.+.+.|++++.+....               
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~----~~--~~L~~~Gi~v~~g~~~~---------------   63 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGV----VT--QRLAQAGAKIYIGHAEE---------------   63 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSH----HH--HHHHHTTCEEEESCCGG---------------
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCCh----hh--hHHHHCCCeEEECCccc---------------
Confidence            4457899999999888776 99999999999988876432    21  23445798876543210               


Q ss_pred             EEeccCCceEEEecCeEEEeeCCCCChhh
Q 016820          281 VKNLVTGQVSDLKVSGLFFAIGHEPATKF  309 (382)
Q Consensus       281 ~~~~~~~~~~~~~~D~vi~~~G~~p~~~~  309 (382)
                               ..-..|.|+.+++...+.+.
T Consensus        64 ---------~i~~~d~vV~S~AI~~~npe   83 (96)
T d1p3da1          64 ---------HIEGASVVVVSSAIKDDNPE   83 (96)
T ss_dssp             ---------GGTTCSEEEECTTSCTTCHH
T ss_pred             ---------cCCCCCEEEECCCcCCCCHH
Confidence                     01135888888887665443

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=87.59  E-value=0.24  Score=36.88  Aligned_cols=35  Identities=23%  Similarity=0.301  Sum_probs=31.6

Q ss_pred             CCcEEEEc-CCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIG-GGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG-~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      -++|.||| .|..|..+|..|.+.|.+|+++++...
T Consensus         9 ~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~   44 (152)
T d2pv7a2           9 IHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW   44 (152)
T ss_dssp             CCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG
T ss_pred             CCeEEEEcCCCHHHHHHHHHHHHcCCCcEecccccc
Confidence            47999999 699999999999999999999987654

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=87.11  E-value=0.15  Score=43.66  Aligned_cols=33  Identities=21%  Similarity=0.336  Sum_probs=30.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      .|+|||+|..|+-.|..+.+.|.+|++++..+.
T Consensus         9 DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~   41 (330)
T d1neka2           9 DAVVIGAGGAGMRAALQISQSGQTCALLSKVFP   41 (330)
T ss_dssp             SCEEECCSHHHHHHHHHHHHTTCCCEEECSSCG
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCC
Confidence            699999999999999999999999999987553

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.91  E-value=0.22  Score=38.28  Aligned_cols=32  Identities=25%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..++|+|+|+|.++-++++.|.+.| ++.|+.+
T Consensus        17 ~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1          17 KDKNIVIYGAGGAARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             CSCEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred             CCCEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence            4578999999999999999998777 8888873

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=86.88  E-value=0.1  Score=37.91  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=24.0

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHc-CCCeE-EEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARA-ELKPI-LFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~-g~~v~-lie   88 (382)
                      ++++|+|+|||-+|.+++..+.+. +++++ ++|
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiD   35 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFD   35 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEe
Confidence            356899999999999998877543 55544 445

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=86.85  E-value=0.29  Score=36.24  Aligned_cols=30  Identities=20%  Similarity=0.386  Sum_probs=24.8

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHc---CCCeEEEe
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARA---ELKPILFE   88 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~---g~~v~lie   88 (382)
                      ++|.||| +|..|.++|+.|...   ..++.|+|
T Consensus         1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D   34 (145)
T d2cmda1           1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYD   34 (145)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred             CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEec
Confidence            4799999 599999999988643   46888888

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=86.84  E-value=0.39  Score=36.88  Aligned_cols=36  Identities=17%  Similarity=0.235  Sum_probs=32.8

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ++-+|+|+|+|..|...+.....+|..|++++.+..
T Consensus        28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~   63 (183)
T d1l7da1          28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAA   63 (183)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHH
Confidence            467999999999999999999999999999988764

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.75  E-value=0.22  Score=44.18  Aligned_cols=32  Identities=19%  Similarity=0.174  Sum_probs=29.5

Q ss_pred             cccEEEECCcHHHHHHHHHHHHcCC-CeEEEec
Q 016820           58 KTKVCIIGSGPAAHTAAIYAARAEL-KPILFEG   89 (382)
Q Consensus        58 ~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie~   89 (382)
                      ..+|+|||+|..|.++|..|++.|. +++|+|.
T Consensus        37 ~~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~   69 (426)
T d1yovb1          37 TCKVLVIGAGGLGCELLKNLALSGFRQIHVIDM   69 (426)
T ss_dssp             HCCEEEECSSTTHHHHHHHHHTTTCCCEEEECC
T ss_pred             cCeEEEECCCHHHHHHHHHHHHcCCCeEEEEEC
Confidence            5689999999999999999999997 8999993

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=86.62  E-value=0.3  Score=36.92  Aligned_cols=32  Identities=22%  Similarity=0.244  Sum_probs=29.2

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|.|||.|..|.-+|..|.+.|.+|+.++|.+
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~   33 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECCc
Confidence            68999999999999999999999999887753

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=86.60  E-value=0.37  Score=37.15  Aligned_cols=32  Identities=22%  Similarity=0.314  Sum_probs=27.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..++|+|+|+|-+|-++++.|.++|. +++++.
T Consensus        17 ~~k~vlIlGaGGaarai~~al~~~g~~~i~i~n   49 (182)
T d1vi2a1          17 KGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFN   49 (182)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHHhhcCCceEeeec
Confidence            34789999999999999999999987 566776

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=86.21  E-value=0.2  Score=41.35  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=28.6

Q ss_pred             ccEEEECC-cHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIGS-GPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGa-G~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|.|| |+.|-.++..|.+.|++|+.+++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r   33 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDV   33 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeec
Confidence            56999997 99999999999999999999984

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=86.19  E-value=0.35  Score=37.02  Aligned_cols=30  Identities=17%  Similarity=0.165  Sum_probs=26.1

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCC-eEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELK-PILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++.+|.+ |+++|
T Consensus        29 ~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d   59 (174)
T d1p0fa2          29 STCAVFGLGGVGFSAIVGCKAAGASRIIGVG   59 (174)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEEC
T ss_pred             CEEEEECCCchhHHHHHHHHHcCCceeeccC
Confidence            4699999999999999999999974 66666

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=85.93  E-value=0.52  Score=36.92  Aligned_cols=33  Identities=18%  Similarity=0.210  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|.|||.|-.|-.+|..|+.+|++|..+++
T Consensus        44 ~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   76 (199)
T d1dxya1          44 GQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDP   76 (199)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cceeeeeeecccccccccccccccceeeeccCC
Confidence            347899999999999999999999999999994

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.90  E-value=0.52  Score=35.65  Aligned_cols=38  Identities=18%  Similarity=0.281  Sum_probs=33.0

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ...+++|+|+|+|.+|.-.+..+...|.+|+.+.+++.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~   62 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSR   62 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSST
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccccccccccchh
Confidence            45689999999999999999888889999998887654

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=85.63  E-value=0.57  Score=33.16  Aligned_cols=37  Identities=16%  Similarity=0.320  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCCc-----------hHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          204 RDKPLAVIGGGD-----------SAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       204 ~~~~v~VvG~G~-----------~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ..++|+|+|+|+           .+..++..|.+.|.++.++..++.-
T Consensus         3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NPeT   50 (121)
T d1a9xa4           3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPET   50 (121)
T ss_dssp             SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCTTS
T ss_pred             CCCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecChhh
Confidence            357899999986           4777888999999999999877754

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.54  E-value=0.41  Score=36.00  Aligned_cols=35  Identities=29%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRR  237 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~  237 (382)
                      ...++++|||+|..|..++..|...|. +++++.|.
T Consensus        22 l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          22 LHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             cccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            357899999999999999999999986 68887765

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=85.48  E-value=0.4  Score=41.01  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=30.1

Q ss_pred             ccccEEEECC-cHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGS-GPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGa-G~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +++.|+|+|| |..|-.++..|.+.|++|+++-+
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R   35 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVH   35 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEEC
Confidence            4678999995 99999999999999999999975

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.46  E-value=0.77  Score=37.69  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=32.4

Q ss_pred             CCcEEEEcC-CchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          205 DKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       205 ~~~v~VvG~-G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      .++|+|.|+ |.+|-.++..|.+.|.+|+.+.|.+..
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~~~   39 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTA   39 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCT
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCCcc
Confidence            578999996 999999999999999999999987654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=85.13  E-value=0.57  Score=36.31  Aligned_cols=37  Identities=24%  Similarity=0.346  Sum_probs=33.2

Q ss_pred             CCCCCcEEEEc-CCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIG-GGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG-~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+|+++|.| +|-+|.+++..|.+.|.+|+++.|+.
T Consensus        20 ~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          20 SVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence            45689999999 58999999999999999999998875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.00  E-value=0.54  Score=36.19  Aligned_cols=33  Identities=18%  Similarity=0.146  Sum_probs=30.6

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|.|||.|..|-..|..+...|.+|..+++
T Consensus        41 ~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~   73 (181)
T d1qp8a1          41 QGEKVAVLGLGEIGTRVGKILAALGAQVRGFSR   73 (181)
T ss_dssp             TTCEEEEESCSTHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCceEEEeccccccccceeeeeccccccccccc
Confidence            357899999999999999999999999999995

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=84.87  E-value=0.51  Score=35.68  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=32.1

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+++|+|+|+|.+|.-.+..++..|.+|+.+.+.+
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcccccccchHH
Confidence            3457899999999999999999999999999887754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.84  E-value=0.44  Score=36.22  Aligned_cols=30  Identities=23%  Similarity=0.289  Sum_probs=25.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCe-EEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKP-ILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v-~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|.++ ++++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~   64 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALD   64 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEE
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCccccccc
Confidence            46999999999999999998888654 5556

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.39  E-value=0.38  Score=35.83  Aligned_cols=30  Identities=23%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|.|||.|--|.++|..|.+.|+++++.+
T Consensus         1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~   30 (152)
T d2ahra2           1 MKIGIIGVGKMASAIIKGLKQTPHELIISG   30 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEEC
T ss_pred             CEEEEEeccHHHHHHHHHHHhCCCeEEEEc
Confidence            368999999999999999999999999988

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=84.37  E-value=0.39  Score=32.70  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=29.1

Q ss_pred             ccccEEEECCcHHHHHH-HHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTA-AIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~-A~~l~~~g~~v~lie   88 (382)
                      ..+++-+||-|-+|+++ |..|.+.|++|+-.|
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD   39 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSD   39 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEE
T ss_pred             hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEe
Confidence            45789999999999888 999999999999999

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=84.24  E-value=1.3  Score=35.87  Aligned_cols=31  Identities=13%  Similarity=0.214  Sum_probs=25.2

Q ss_pred             ccEEEE-C-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCII-G-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvII-G-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|++| | ++-.|.+.|..|++.|++|++.++
T Consensus         1 KKValITGas~GIG~aia~~la~~Ga~V~~~~r   33 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLVKDGFAVAIADY   33 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEcCCccHHHHHHHHHHHHCCCEEEEEEC
Confidence            356444 6 566999999999999999999983

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.16  E-value=0.52  Score=36.85  Aligned_cols=35  Identities=23%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             CCcEEEEcC-CchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          205 DKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       205 ~~~v~VvG~-G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      -++|+|+|+ |.+|..++..|.+.|.+|+.+.|++.
T Consensus         3 ~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~   38 (205)
T d1hdoa_           3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSS   38 (205)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGG
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChh
Confidence            478999995 99999999999999999999998753

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=84.11  E-value=0.52  Score=35.73  Aligned_cols=35  Identities=23%  Similarity=0.262  Sum_probs=30.6

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRD  238 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~  238 (382)
                      .+++|+|+|+|-+|--++..|.+.|. +|+++.|..
T Consensus        16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~   51 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNV   51 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCH
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccH
Confidence            57899999999999999999999995 788887754

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=83.96  E-value=0.5  Score=37.08  Aligned_cols=32  Identities=22%  Similarity=0.190  Sum_probs=29.7

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..++|+|-|-|-.|..+|..|.+.|.+|++.|
T Consensus        26 ~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d   57 (201)
T d1c1da1          26 DGLTVLVQGLGAVGGSLASLAAEAGAQLLVAD   57 (201)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHCCCEEEEec
Confidence            34789999999999999999999999999888

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=83.67  E-value=0.51  Score=35.04  Aligned_cols=31  Identities=16%  Similarity=0.169  Sum_probs=27.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcC-CCeEEEec
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAE-LKPILFEG   89 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g-~~v~lie~   89 (382)
                      ++|.+||+|.-|.+.|..|.+.| +++.++++
T Consensus         1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r   32 (152)
T d1yqga2           1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANR   32 (152)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSCEEEEECS
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeC
Confidence            36899999999999999988887 88888883

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=83.50  E-value=0.53  Score=38.18  Aligned_cols=30  Identities=10%  Similarity=0.018  Sum_probs=24.9

Q ss_pred             cE-EEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           60 KV-CIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        60 ~v-vIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +| +|.| ++-.|.++|..|++.|++|+++++
T Consensus         2 kVvlITGas~GIG~aiA~~la~~Ga~V~~~~~   33 (257)
T d1fjha_           2 SIIVISGCATGIGAATRKVLEAAGHQIVGIDI   33 (257)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            45 4456 577999999999999999999984

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=83.46  E-value=0.57  Score=36.61  Aligned_cols=33  Identities=15%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|.|||-|-.|-.+|..|..+|++|..+++
T Consensus        42 ~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~   74 (197)
T d1j4aa1          42 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDI   74 (197)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECS
T ss_pred             cCCeEEEecccccchhHHHhHhhhcccccccCc
Confidence            457899999999999999999999999999983

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=83.44  E-value=0.29  Score=35.30  Aligned_cols=28  Identities=11%  Similarity=0.042  Sum_probs=24.7

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++++|+|.|..|..++..|.  +.+++++|
T Consensus         1 kHivI~G~g~~g~~l~~~L~--~~~i~vi~   28 (129)
T d2fy8a1           1 RHVVICGWSESTLECLRELR--GSEVFVLA   28 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTSC--GGGEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHc--CCCCEEEE
Confidence            47999999999999999995  55788888

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=83.39  E-value=0.78  Score=32.80  Aligned_cols=38  Identities=18%  Similarity=0.288  Sum_probs=31.3

Q ss_pred             CCCCcEEEEcCCc-----------hHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          203 FRDKPLAVIGGGD-----------SAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       203 ~~~~~v~VvG~G~-----------~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      ...++|+|+|+|+           .+++.+..|.+.|.++.++..++.-
T Consensus         5 ~~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP~T   53 (127)
T d1a9xa3           5 TDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNPAT   53 (127)
T ss_dssp             SSCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCTTC
T ss_pred             CCCCEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCchHh
Confidence            3468999999986           4778888999999999998877754

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=83.30  E-value=0.8  Score=35.16  Aligned_cols=36  Identities=22%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ..++++.|+|-|.+|-.++..+...|.+|+.+.+.+
T Consensus        40 l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1          40 IQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             CTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEeccccccccceeeeeccccccccccccc
Confidence            458999999999999999999999999999887653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.29  E-value=0.69  Score=34.75  Aligned_cols=37  Identities=19%  Similarity=0.155  Sum_probs=31.9

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+++|+|+|+|.+|.-.+..++..|.+|..+.+.+
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~   61 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDD   61 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCCccceecchh
Confidence            4467899999999999999999999999998887653

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=83.17  E-value=0.57  Score=36.70  Aligned_cols=32  Identities=19%  Similarity=0.209  Sum_probs=29.1

Q ss_pred             cEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          207 PLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       207 ~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      +|.|+|.|.+|.-+|..|++.|.+|+.++...
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~   33 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCCH
Confidence            58999999999999999999999999887653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=83.12  E-value=0.63  Score=35.38  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=25.8

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCC-CeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAEL-KPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~-~v~lie   88 (382)
                      ..|+|+|+|..|+.++..++..|. +|+.++
T Consensus        30 dtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~   60 (176)
T d2jhfa2          30 STCAVFGLGGVGLSVIMGCKAAGAARIIGVD   60 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEECCCCcHHHHHHHHHHcCCceEEeec
Confidence            359999999999999999999985 666666

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.06  E-value=0.51  Score=40.14  Aligned_cols=31  Identities=16%  Similarity=0.294  Sum_probs=28.2

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|+| +|+.|..++..|.+.|++|+++++
T Consensus         1 MKiLItG~tGfIG~~l~~~L~~~g~~V~~~d~   32 (338)
T d1udca_           1 MRVLVTGGSGYIGSHTCVQLLQNGHDVIILDN   32 (338)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEEC
Confidence            3589997 799999999999999999999984

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=82.59  E-value=2.4  Score=34.40  Aligned_cols=30  Identities=27%  Similarity=0.191  Sum_probs=24.7

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      +.++|.| ++-.|.++|..|++.|++|++.+
T Consensus         8 K~alITGas~GIG~aia~~la~~G~~Vv~~~   38 (261)
T d1geea_           8 KVVVITGSSTGLGKSMAIRFATEKAKVVVNY   38 (261)
T ss_dssp             CEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence            3445555 67789999999999999999998

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=82.46  E-value=0.59  Score=40.10  Aligned_cols=33  Identities=21%  Similarity=0.062  Sum_probs=29.9

Q ss_pred             ccccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +.++|+|.| +|+.|..++..|.+.|++|+.++.
T Consensus        14 ~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~   47 (363)
T d2c5aa1          14 ENLKISITGAGGFIASHIARRLKHEGHYVIASDW   47 (363)
T ss_dssp             SCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeC
Confidence            456799998 899999999999999999999984

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.37  E-value=0.29  Score=36.64  Aligned_cols=25  Identities=16%  Similarity=0.186  Sum_probs=21.2

Q ss_pred             ccccEEEECC-cHHHHHHHHHHHHcC
Q 016820           57 LKTKVCIIGS-GPAAHTAAIYAARAE   81 (382)
Q Consensus        57 ~~~~vvIIGa-G~aGl~~A~~l~~~g   81 (382)
                      .+.+|.|||| |..|.++|+.|...+
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~   27 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGS   27 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTT
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHH
Confidence            3568999995 999999999998653

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=82.34  E-value=0.61  Score=35.45  Aligned_cols=37  Identities=11%  Similarity=0.168  Sum_probs=32.0

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+++++|+|+|-++--++..|.+.+.+|+++.|..
T Consensus        15 ~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~   51 (171)
T d1p77a1          15 LRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTF   51 (171)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSH
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchH
Confidence            3467899999999999988888888888999998874

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=82.25  E-value=0.72  Score=34.97  Aligned_cols=30  Identities=20%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCC-eEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELK-PILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~-v~lie   88 (382)
                      ..|+|+|+|+.|+.++..++..|.. |+.++
T Consensus        30 ~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~   60 (175)
T d1cdoa2          30 STCAVFGLGAVGLAAVMGCHSAGAKRIIAVD   60 (175)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             CEEEEEecCCccchHHHHHHHHhhchheeec
Confidence            3589999999999999999999765 66666

>d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: UDP-glucuronate decarboxylase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.24  E-value=0.6  Score=39.23  Aligned_cols=32  Identities=9%  Similarity=0.125  Sum_probs=28.9

Q ss_pred             cccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      +++|+|.| +|+.|..++.+|.+.|++|+.+++
T Consensus         1 kKKIlVtG~sGfiG~~lv~~L~~~g~~V~~~d~   33 (312)
T d2b69a1           1 RKRILITGGAGFVGSHLTDKLMMDGHEVTVVDN   33 (312)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCcCEEEEEeC
Confidence            36799998 799999999999999999999984

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=82.20  E-value=0.65  Score=35.54  Aligned_cols=37  Identities=19%  Similarity=0.306  Sum_probs=31.4

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~  238 (382)
                      ...+++|+|+|+|.+|.-.+..+...|. +|+.+.+++
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccchhheeccccccccccccccccc
Confidence            4457899999999999999999999996 788887754

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.96  E-value=0.72  Score=34.64  Aligned_cols=37  Identities=27%  Similarity=0.328  Sum_probs=34.0

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+|+++|+|-|.+|-.+|..+...|.+|++++..+
T Consensus        21 ~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          21 MIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             eecCCEEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            5578999999999999999999999999999998864

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.90  E-value=0.58  Score=40.67  Aligned_cols=30  Identities=17%  Similarity=0.399  Sum_probs=27.9

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ++|+|.| +|+.|..++.+|.+.|++|+.+|
T Consensus         2 ~kILVTGatGfiG~~lv~~Ll~~g~~V~~iD   32 (393)
T d1i24a_           2 SRVMVIGGDGYCGWATALHLSKKNYEVCIVD   32 (393)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence            4789998 79999999999999999999998

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.89  E-value=0.69  Score=39.31  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=28.6

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ++|+|.| +|+.|-.++.+|.+.|++|+.+|.
T Consensus         3 kKILITG~tGfIGs~lv~~Ll~~g~~V~~ld~   34 (346)
T d1ek6a_           3 EKVLVTGGAGYIGSHTVLELLEAGYLPVVIDN   34 (346)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             CeEEEECCCcHHHHHHHHHHHHCcCEEEEEEC
Confidence            5799997 799999999999999999999984

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.83  E-value=0.73  Score=34.55  Aligned_cols=33  Identities=27%  Similarity=0.255  Sum_probs=29.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ++|.+||-|..|..+|..|.+.|.+|+++.|.+
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~   34 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   34 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECch
Confidence            469999999999999999999999999887753

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=81.62  E-value=0.46  Score=38.15  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=28.2

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcC-CEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYG-SKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g-~~v~~~~~~~  238 (382)
                      -.++|||+|+.|+.+|.++++.| ++|.++....
T Consensus         4 YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~   37 (240)
T d1feca1           4 YDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQK   37 (240)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCS
T ss_pred             cCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEec
Confidence            36999999999999999999987 4688887654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=81.57  E-value=2.2  Score=34.42  Aligned_cols=30  Identities=17%  Similarity=0.025  Sum_probs=25.7

Q ss_pred             ccEEEEC-CcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIG-SGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      +.++|.| ++-.|.+.|..|++.|++|++.+
T Consensus         6 K~~lITGas~GIG~aia~~la~~Ga~V~i~~   36 (251)
T d1vl8a_           6 RVALVTGGSRGLGFGIAQGLAEAGCSVVVAS   36 (251)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4567777 46689999999999999999998

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=81.56  E-value=0.71  Score=34.06  Aligned_cols=35  Identities=14%  Similarity=0.270  Sum_probs=30.1

Q ss_pred             CCCcEEEEcCCchHHHHHHHHhhcC--CEEEEEEeCC
Q 016820          204 RDKPLAVIGGGDSAMEEANFLTKYG--SKVYIIHRRD  238 (382)
Q Consensus       204 ~~~~v~VvG~G~~a~e~a~~l~~~g--~~v~~~~~~~  238 (382)
                      ..++|+|||+|.+|..+|..|...+  .++.++++.+
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            3568999999999999999998876  5899998764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=81.46  E-value=0.73  Score=34.91  Aligned_cols=30  Identities=13%  Similarity=0.096  Sum_probs=25.0

Q ss_pred             ccEEEECCcHHHHHHHHHHHHcCCCeEEEe
Q 016820           59 TKVCIIGSGPAAHTAAIYAARAELKPILFE   88 (382)
Q Consensus        59 ~~vvIIGaG~aGl~~A~~l~~~g~~v~lie   88 (382)
                      ..|+|+|+|..|+.++..++.+|.+++++.
T Consensus        30 ~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~   59 (176)
T d2fzwa2          30 SVCAVFGLGGVGLAVIMGCKVAGASRIIGV   59 (176)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEE
T ss_pred             CEEEEecchhHHHHHHHHHHHHhcCceEEE
Confidence            358999999999999999999997655554

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=81.45  E-value=0.54  Score=40.11  Aligned_cols=33  Identities=27%  Similarity=0.326  Sum_probs=27.3

Q ss_pred             CcEEEEcCCchHHHHHHHHhh----cCCEEEEEEeCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTK----YGSKVYIIHRRD  238 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~----~g~~v~~~~~~~  238 (382)
                      -.|+|||+|..|+-.|..+++    .|.+|.+++..+
T Consensus        22 ~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~   58 (356)
T d1jnra2          22 TDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAA   58 (356)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSC
T ss_pred             cCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCC
Confidence            469999999999888887764    688999998643

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=80.80  E-value=0.88  Score=35.56  Aligned_cols=36  Identities=14%  Similarity=0.177  Sum_probs=31.6

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      ...+++|+|.|.|.+|..+|..|.+.|.+|++.+..
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            356899999999999999999999999999866543

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=80.71  E-value=1.1  Score=33.62  Aligned_cols=37  Identities=16%  Similarity=0.186  Sum_probs=31.8

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~  238 (382)
                      ...+++|+|+|+|.+|.-.+..+...|.++.++.+.+
T Consensus        28 ~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~   64 (168)
T d1uufa2          28 AGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSE   64 (168)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CCCCCEEEEeccchHHHHHHHHhhcccccchhhccch
Confidence            5568999999999999999999998999988777654

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=80.61  E-value=0.89  Score=38.68  Aligned_cols=53  Identities=15%  Similarity=0.169  Sum_probs=39.0

Q ss_pred             CCCcEEEEcC-CchHHHHHHHHhhcCCEEEEEEeCCCCcchHHHHHHhccCCCcEEEc
Q 016820          204 RDKPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDSFRASKIMQNRALTNPKIDVIW  260 (382)
Q Consensus       204 ~~~~v~VvG~-G~~a~e~a~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~~~gv~~~~  260 (382)
                      ..|+|+|+|+ |.+|..++..|.+.|.+|+.+.|+..-...    .......|++++.
T Consensus         2 ~kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~----~~~~~~~~v~~~~   55 (350)
T d1xgka_           2 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIA----EELQAIPNVTLFQ   55 (350)
T ss_dssp             CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHH----HHHHTSTTEEEEE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhh----hhhcccCCCEEEE
Confidence            3688999996 999999999999999999999986543211    2223445666654

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=80.54  E-value=0.78  Score=34.97  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=29.2

Q ss_pred             CCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeC
Q 016820          203 FRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRR  237 (382)
Q Consensus       203 ~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~  237 (382)
                      ..+++++|+|+|-++--++..|.+.+ +|+++.|.
T Consensus        16 ~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~   49 (177)
T d1nvta1          16 VKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRT   49 (177)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             cCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhh
Confidence            46799999999999988888888776 89988875

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.53  E-value=0.79  Score=38.98  Aligned_cols=38  Identities=18%  Similarity=0.137  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEc-CCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          202 IFRDKPLAVIG-GGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       202 ~~~~~~v~VvG-~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ++++|+|+|.| +|.+|..++..|.+.|.+|+.+.|...
T Consensus         5 ~~~~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           5 FWQGKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTAP   43 (356)
T ss_dssp             HHTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCS
T ss_pred             hhCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence            35689999998 589999999999999999999988654

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.49  E-value=0.99  Score=34.02  Aligned_cols=37  Identities=16%  Similarity=0.196  Sum_probs=31.1

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCC-EEEEEEeCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGS-KVYIIHRRD  238 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~-~v~~~~~~~  238 (382)
                      ...+++|+|+|+|..|+-.+..+...|. +|+++++.+
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~   61 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSA   61 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCH
Confidence            3457899999999999999999999997 688777653

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=80.34  E-value=0.76  Score=39.11  Aligned_cols=32  Identities=9%  Similarity=0.087  Sum_probs=29.7

Q ss_pred             cccEEEEC-CcHHHHHHHHHHHHcCCCeEEEec
Q 016820           58 KTKVCIIG-SGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        58 ~~~vvIIG-aG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      .++|+|.| +|+.|..++..|.+.|++|..+++
T Consensus         8 ~KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r   40 (356)
T d1rkxa_           8 GKRVFVTGHTGFKGGWLSLWLQTMGATVKGYSL   40 (356)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHCCCEEEEEEC
Confidence            47899998 789999999999999999999985

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=80.31  E-value=1  Score=34.86  Aligned_cols=38  Identities=24%  Similarity=0.225  Sum_probs=33.3

Q ss_pred             CCCCCcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCC
Q 016820          202 IFRDKPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDS  239 (382)
Q Consensus       202 ~~~~~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~  239 (382)
                      ...++++.|||-|.+|-++|..+...|.+|..+.+...
T Consensus        46 eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~   83 (193)
T d1mx3a1          46 RIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLS   83 (193)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSC
T ss_pred             eeeCceEEEeccccccccceeeeeccccceeeccCccc
Confidence            45689999999999999999999999999988876543

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=80.28  E-value=0.74  Score=35.77  Aligned_cols=33  Identities=18%  Similarity=0.314  Sum_probs=30.3

Q ss_pred             ccccEEEECCcHHHHHHHHHHHHcCCCeEEEec
Q 016820           57 LKTKVCIIGSGPAAHTAAIYAARAELKPILFEG   89 (382)
Q Consensus        57 ~~~~vvIIGaG~aGl~~A~~l~~~g~~v~lie~   89 (382)
                      ..+.|.|||-|-.|-.+|..|...|++|..+++
T Consensus        48 ~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1          48 RGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             eCceEEEeccccccccceeeeeccccceeeccC
Confidence            346899999999999999999999999999993

>d1rpna_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.25  E-value=1.4  Score=36.71  Aligned_cols=35  Identities=26%  Similarity=0.221  Sum_probs=30.8

Q ss_pred             CcEEEEcC-CchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGG-GDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~-G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      |+|+|.|+ |.+|..++..|.+.|.+|+.+.|....
T Consensus         1 k~vLItG~tGfiG~~l~~~Ll~~g~~V~~~~r~~~~   36 (321)
T d1rpna_           1 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSS   36 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCcCEEEEEECCCCc
Confidence            67999986 899999999999999999999887654

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=80.10  E-value=0.66  Score=38.74  Aligned_cols=34  Identities=18%  Similarity=0.249  Sum_probs=28.9

Q ss_pred             CcEEEEcCCchHHHHHHHHhhcCCEEEEEEeCCCC
Q 016820          206 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDSF  240 (382)
Q Consensus       206 ~~v~VvG~G~~a~e~a~~l~~~g~~v~~~~~~~~~  240 (382)
                      -.|+|||+|..|+-.|..+.+.+ +|.+++..+..
T Consensus         8 ~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~   41 (305)
T d1chua2           8 CDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVT   41 (305)
T ss_dssp             CSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTT
T ss_pred             CCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCC
Confidence            47999999999999999988877 89999876543