Citrus Sinensis ID: 016837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MYELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMDGTGESRARSRAWTRHRRSAGALSERRRFLWGENLLGLQDEEDDEEDDLHIFSDVGEDTSPIPRRRRRLTQSRSDEDQP
ccccccccccccccEEEEEEEEcccccccccccccccccHHHHccccccccccccccccccEEEEEcccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccEEEccHHHHHHcccccccccccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEcccccccccccccccccccccEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccEcccccHEEEEEEEEEEEHHHHHHccccccccccHHHHHHHHHHHcccccccccccccEEEEEEccccccccccEccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccEEEEHHHHHHHHHcccccccccccEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccEEEEccccccccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccc
myelcssgFDVLINSICLVVYDSACKMagvkrrmytdsdIHALHKeldeiscpicmdhphnAVLLICSshdkgcrsyicdtsyrhsncldrYKKLrtssrnnttlshsspshpqhnkgpgennIQQADRLLEregegnlnpeagnsqtfhertelegldvdnssesilslkcpmcrgaiLGWEVVEEARKYLNLkrrtcsrescsfvGNYQELRRharrvhpttrpsdidpsRERAWRRLEHQREYSDIVSAIRssmpgavvVGDYviengdrfsagresgngevnapwwTTFFLFHMIgsmdgtgesrARSRAWTRHRRSAGALSERRRFLwgenllglqdeeddeeddlhifsdvgedtspiprrrrrltqsrsdedqp
MYELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRnnttlshsspshpqhnkgpgENNIQQADRLLEREGEGNlnpeagnsqtfhERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLnlkrrtcsrescsfvgnyqelrrharrvhpttrpsdidpsrerAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMDGTGESRARSRAWTrhrrsagalserrrflwGENLLGLQDEEDDEEDDLHIfsdvgedtspiprrrrrltqsrsdedqp
MYELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMDGTGEsrarsrawtrhrrsaGALSERRRFLWGENLLGLQdeeddeeddLHIFSDVGEDTSPIPrrrrrLTQSRSDEDQP
***LCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYK*************************************************************************ILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQEL********************************YSDIVSAIRSSMPGAVVVGDYVIENGDRFSAG***GNGEVNAPWWTTFFLFHMIGS***************************RRFLWGENLLG******************************************
*************NSICLVVYDS**********************ELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLD******************************************************************************SLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRF*A*****NGEVNAPWWTTFFLF*************************************************************************************
MYELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRT**********************GENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRH**************PSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMD*********************LSERRRFLWGENLLGLQDEEDDEEDDLHIFSDVGEDTSPIPRRR*************
*YELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRT*********************************************************LE*********SILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDR**********EVNAPWWTTFFLFHMIG***************************************LQ**************D*GEDTSP******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MYELCSSGFDVLINSICLVVYDSACKMAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMDGTGESRARSRAWTRHRRSAGALSERRRFLWGENLLGLQDEEDDEEDDLHIFSDVGEDTSPIPRRRRRLTQSRSDEDQP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
255560205386 conserved hypothetical protein [Ricinus 0.881 0.870 0.703 1e-136
224064830368 predicted protein [Populus trichocarpa] 0.884 0.915 0.639 1e-121
449443778389 PREDICTED: uncharacterized protein LOC10 0.921 0.902 0.584 1e-116
449443780386 PREDICTED: uncharacterized protein LOC10 0.918 0.906 0.583 1e-115
356567892349 PREDICTED: uncharacterized protein LOC10 0.902 0.985 0.625 1e-112
356527407385 PREDICTED: uncharacterized protein LOC10 0.910 0.901 0.580 1e-111
225464219347 PREDICTED: uncharacterized protein LOC10 0.908 0.997 0.621 1e-111
297831344354 hypothetical protein ARALYDRAFT_479993 [ 0.834 0.898 0.601 1e-107
357505393356 Pm27 protein [Medicago truncatula] gi|35 0.902 0.966 0.606 1e-105
15230170354 uncharacterized protein [Arabidopsis tha 0.839 0.903 0.590 1e-102
>gi|255560205|ref|XP_002521120.1| conserved hypothetical protein [Ricinus communis] gi|223539689|gb|EEF41271.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 263/374 (70%), Positives = 289/374 (77%), Gaps = 38/374 (10%)

Query: 27  MAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHS 86
           M GVKR  YTDSDI  LH ELDE+SCPICMDHPHNAVLL+CSSH+KGCRSYICDTS RHS
Sbjct: 1   MTGVKRSRYTDSDIRTLHNELDEVSCPICMDHPHNAVLLLCSSHEKGCRSYICDTSSRHS 60

Query: 87  NCLDRYKKLRTSSRNNTTLSHSSP----------------------SHPQHNKGPG---- 120
           NCLDRYKKLR SS +NTTL  S P                      S+  HN+       
Sbjct: 61  NCLDRYKKLRDSSGSNTTLDSSLPINSFSSSNISDTSLTLGARVLDSYENHNQSDSDNIT 120

Query: 121 ---------ENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLK 171
                    EN+IQ  +R +E  GEG L  EAG+S++F +R ELE  DV NSSE+ LSLK
Sbjct: 121 SVRMPEQLLENSIQHPNRQVETRGEGVL--EAGDSESFPDRIELEEADVVNSSEAGLSLK 178

Query: 172 CPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDIDP 231
           CP+CRGA+LGWEVVEEARKYLNLK+R+CSRESCSF GNYQELRRHARRVHPTTRPSD+DP
Sbjct: 179 CPLCRGAVLGWEVVEEARKYLNLKKRSCSRESCSFCGNYQELRRHARRVHPTTRPSDVDP 238

Query: 232 SRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDYVIENGDRFSAGRESGNGEVNAPWWT 291
           SRERAWR LE QREY DIVSA+RS+MPGAVVVGDYVIENGDRFS  RE G GEVNAPWWT
Sbjct: 239 SRERAWRCLERQREYGDIVSALRSAMPGAVVVGDYVIENGDRFSVEREGGAGEVNAPWWT 298

Query: 292 TFFLFHMIGSMDGTGESRARSRAWTRHRRSAGALSERRRFLWGENLLGLQDEEDDEEDDL 351
           TFFLF MIGS+DG  E RARSRAWTRHRRS GAL E RRFLWGENLLGLQD+++D+E DL
Sbjct: 299 TFFLFQMIGSIDGAAEPRARSRAWTRHRRSGGALPE-RRFLWGENLLGLQDDDEDDEGDL 357

Query: 352 HIFSDVGEDTSPIP 365
           HI SD GED SPIP
Sbjct: 358 HILSDAGEDASPIP 371

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224064830|ref|XP_002301572.1| predicted protein [Populus trichocarpa] gi|222843298|gb|EEE80845.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449443778|ref|XP_004139654.1| PREDICTED: uncharacterized protein LOC101208460 isoform 1 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449443780|ref|XP_004139655.1| PREDICTED: uncharacterized protein LOC101208460 isoform 2 [Cucumis sativus] gi|449443782|ref|XP_004139656.1| PREDICTED: uncharacterized protein LOC101208460 isoform 3 [Cucumis sativus] gi|449527327|ref|XP_004170663.1| PREDICTED: uncharacterized protein LOC101225264 isoform 1 [Cucumis sativus] gi|449527329|ref|XP_004170664.1| PREDICTED: uncharacterized protein LOC101225264 isoform 2 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567892|ref|XP_003552149.1| PREDICTED: uncharacterized protein LOC100807316 [Glycine max] Back     alignment and taxonomy information
>gi|356527407|ref|XP_003532302.1| PREDICTED: uncharacterized protein LOC100791202 [Glycine max] Back     alignment and taxonomy information
>gi|225464219|ref|XP_002265815.1| PREDICTED: uncharacterized protein LOC100263112 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297831344|ref|XP_002883554.1| hypothetical protein ARALYDRAFT_479993 [Arabidopsis lyrata subsp. lyrata] gi|297329394|gb|EFH59813.1| hypothetical protein ARALYDRAFT_479993 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357505393|ref|XP_003622985.1| Pm27 protein [Medicago truncatula] gi|355498000|gb|AES79203.1| Pm27 protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|15230170|ref|NP_189118.1| uncharacterized protein [Arabidopsis thaliana] gi|79313363|ref|NP_001030761.1| uncharacterized protein [Arabidopsis thaliana] gi|11994657|dbj|BAB02885.1| unnamed protein product [Arabidopsis thaliana] gi|19715579|gb|AAL91615.1| AT3g24740/K7P8_3 [Arabidopsis thaliana] gi|20334910|gb|AAM16211.1| AT3g24740/K7P8_3 [Arabidopsis thaliana] gi|332643420|gb|AEE76941.1| uncharacterized protein [Arabidopsis thaliana] gi|332643421|gb|AEE76942.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
TAIR|locus:2087303354 AT3G24740 "AT3G24740" [Arabido 0.910 0.980 0.554 3.8e-101
TAIR|locus:2200166334 AT1G68140 "AT1G68140" [Arabido 0.364 0.416 0.431 1.1e-50
TAIR|locus:2128146308 AT4G31410 "AT4G31410" [Arabido 0.338 0.418 0.458 1.1e-46
TAIR|locus:2203241265 AT1G77770 [Arabidopsis thalian 0.291 0.418 0.495 3.7e-46
TAIR|locus:2133519274 AT4G08460 [Arabidopsis thalian 0.291 0.405 0.495 5.3e-45
TAIR|locus:2092140372 AT3G25910 [Arabidopsis thalian 0.580 0.594 0.393 1.5e-44
TAIR|locus:2037778259 AT1G15430 "AT1G15430" [Arabido 0.144 0.212 0.6 1.4e-31
TAIR|locus:2016219255 AT1G80220 [Arabidopsis thalian 0.157 0.235 0.483 1.1e-25
TAIR|locus:2057396221 AT2G26050 [Arabidopsis thalian 0.220 0.380 0.352 4.6e-20
TAIR|locus:2087303 AT3G24740 "AT3G24740" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1003 (358.1 bits), Expect = 3.8e-101, P = 3.8e-101
 Identities = 200/361 (55%), Positives = 243/361 (67%)

Query:    27 MAGVKRRMYTDSDIHALHKELDEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHS 86
             MAGVKR++ T+SD+HALHKELDE+SCP+CMDHPHNAVLL+CSSHDKGCRSYICDTSYRHS
Sbjct:     1 MAGVKRKLSTESDVHALHKELDEVSCPVCMDHPHNAVLLLCSSHDKGCRSYICDTSYRHS 60

Query:    87 NCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQADRLLEREGEGNLNPEAGNS 146
             NCLDR+KKL + S N+ T   +  S   +N+   E+          RE  GN    + +S
Sbjct:    61 NCLDRFKKLHSESANDPTPEANLASREHNNESLYEHGTASRSSF-HRES-GNRG-SSWDS 117

Query:   147 QTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSF 206
             ++   R  +E  +V+  SE I +LKCP+CRG +LGW+VVEE R YL+ K R+CSRESCSF
Sbjct:   118 ESLRRRRRVEE-EVE--SEDITNLKCPLCRGTVLGWKVVEEVRTYLDHKNRSCSRESCSF 174

Query:   207 VGNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVSAIRSSMPGAVVVGDY 266
              GNYQ+LRRHARR HPTTRPSD DPSRERAWRRLE+QREY DIVSAIRS+MPGAVVVGDY
Sbjct:   175 TGNYQDLRRHARRTHPTTRPSDTDPSRERAWRRLENQREYGDIVSAIRSAMPGAVVVGDY 234

Query:   267 VIENGDRFSAGRESGNGEVNAPWWTTFFLFHMIGSMDGTGEXXXXXXXXXXXXXXXGALS 326
             VIENGDRF+  RE+GNG   +  WTT  LF MIGS+D  G                   +
Sbjct:   235 VIENGDRFAGERETGNG--GSDLWTTLLLFQMIGSLDNGGSSASGSGGGSRSHRSRAWRN 292

Query:   327 ERRR-----FLWGENLLGLQXXXXXXXXX-LHIFSDVGEDTSPIPXXXXXLTQSRSDEDQ 380
              RR      +LWGENLLGLQ            + +D G  ++P+P       + RS  + 
Sbjct:   293 HRRSSSDRPYLWGENLLGLQDERNNNDDEEFRLQNDAGGASTPVPRRRRRFGRPRSSGNH 352

Query:   381 P 381
             P
Sbjct:   353 P 353
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA
TAIR|locus:2200166 AT1G68140 "AT1G68140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128146 AT4G31410 "AT4G31410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203241 AT1G77770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2133519 AT4G08460 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092140 AT3G25910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037778 AT1G15430 "AT1G15430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016219 AT1G80220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2057396 AT2G26050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_II001975
hypothetical protein (368 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
pfam07800148 pfam07800, DUF1644, Protein of unknown function (D 4e-59
>gnl|CDD|219584 pfam07800, DUF1644, Protein of unknown function (DUF1644) Back     alignment and domain information 
 Score =  188 bits (479), Expect = 4e-59
 Identities = 79/204 (38%), Positives = 109/204 (53%), Gaps = 56/204 (27%)

Query: 48  DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSH 107
           ++++CPIC++HPHNAVLL+CSSHDKGCR Y+CD                TS R      H
Sbjct: 1   EDVTCPICLEHPHNAVLLLCSSHDKGCRPYMCD----------------TSHR------H 38

Query: 108 SSPSHPQHNKGPGENNIQQADRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESI 167
           S             N + Q  +   ++     + E  +S                     
Sbjct: 39  S-------------NCLDQFKKAYSKKRNSGKDSEKEDSTE------------------- 66

Query: 168 LSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPS 227
             L CP+CRG + GW VVE AR++LN K+R+C +E CSF G Y+ELR+HAR  HP  RP 
Sbjct: 67  --LTCPLCRGEVKGWTVVEPARRFLNSKKRSCMQEGCSFSGTYRELRKHARSEHPGARPR 124

Query: 228 DIDPSRERAWRRLEHQREYSDIVS 251
           ++DP+R+R W RLE + EY D++S
Sbjct: 125 EVDPARQRRWERLERESEYQDVLS 148

This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, and is probably a zinc-binding domain. Length = 148

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
PF07800162 DUF1644: Protein of unknown function (DUF1644); In 100.0
PLN03208193 E3 ubiquitin-protein ligase RMA2; Provisional 95.23
PHA02929238 N1R/p28-like protein; Provisional 92.2
KOG417262 consensus Predicted E3 ubiquitin ligase [Posttrans 91.23
PF1390924 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W 91.04
PF1392050 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); 85.05
PHA02926242 zinc finger-like protein; Provisional 82.83
KOG3002299 consensus Zn finger protein [General function pred 82.0
TIGR00599397 rad18 DNA repair protein rad18. This family is bas 80.1
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function Back     alignment and domain information 
Probab=100.00  E-value=1.3e-91  Score=623.46  Aligned_cols=162  Identities=56%  Similarity=1.132  Sum_probs=144.9

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHHhhcCCCCCCCCCCCCCCCCCCCCCCCCCccchh
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKKLRTSSRNNTTLSHSSPSHPQHNKGPGENNIQQA  127 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkKa~~~~~~~~~~~~ss~~~~~~~~~~~~~~i~~~  127 (381)
                      |||+||||||||||||||+||||+|||||||||||||||||||||||||++++++.++++++.+...         +.. 
T Consensus         1 ed~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~---------~~~-   70 (162)
T PF07800_consen    1 EDVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDS---------SSS-   70 (162)
T ss_pred             CCccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCC---------ccc-
Confidence            7999999999999999999999999999999999999999999999999999988766654322111         000 


Q ss_pred             hhhhhhhcCCCCCCCCCCCccccccccccccccCCCccccccccCccccccccceEEcchHHHhhcccCCCCcccCCccc
Q 016837          128 DRLLEREGEGNLNPEAGNSQTFHERTELEGLDVDNSSESILSLKCPMCRGAILGWEVVEEARKYLNLKRRTCSRESCSFV  207 (381)
Q Consensus       128 ~~~~~~~~e~~~~~~~~~s~~l~~~~~~~~~~~~~s~~~~~~L~CPLCRG~VkGWtVVe~AR~yLN~KkRSCs~E~CsF~  207 (381)
                                                      .......+++|+||||||+|||||||++||+|||+|+||||+|+|+|+
T Consensus        71 --------------------------------~~~~~~~~~~L~CPLCRG~V~GWtvve~AR~~LN~K~RsC~~e~C~F~  118 (162)
T PF07800_consen   71 --------------------------------ESSESQEQPELACPLCRGEVKGWTVVEPARRFLNAKKRSCSQESCSFS  118 (162)
T ss_pred             --------------------------------ccccccccccccCccccCceeceEEchHHHHHhccCCccCcccccccc
Confidence                                            011223568899999999999999999999999999999999999999


Q ss_pred             ccHHHHHHHHhhhCCCCCCCCCCchHHHHHHHHhhhhhhhHHHH
Q 016837          208 GNYQELRRHARRVHPTTRPSDIDPSRERAWRRLEHQREYSDIVS  251 (381)
Q Consensus       208 GtY~ELRKHaR~~HP~aRPseVDP~Rqr~W~rLE~erE~~DvlS  251 (381)
                      |||.|||||||.+||++||++|||+||++|++||+||||+||||
T Consensus       119 GtY~eLrKHar~~HP~~rP~~vDP~rq~~W~~le~~re~~D~iS  162 (162)
T PF07800_consen  119 GTYSELRKHARSEHPSARPSEVDPQRQRDWERLEREREYGDVIS  162 (162)
T ss_pred             cCHHHHHHHHHhhCCCCCCccCCHHHHHHHHHHHHhhhhhcccC
Confidence            99999999999999999999999999999999999999999997

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional Back     alignment and domain information
>PHA02929 N1R/p28-like protein; Provisional Back     alignment and domain information
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A Back     alignment and domain information
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A Back     alignment and domain information
>PHA02926 zinc finger-like protein; Provisional Back     alignment and domain information
>KOG3002 consensus Zn finger protein [General function prediction only] Back     alignment and domain information
>TIGR00599 rad18 DNA repair protein rad18 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
3hct_A118 TNF receptor-associated factor 6; cross-brace, bet 98.42
1rmd_A116 RAG1; V(D)J recombination, antibody, MAD, ring fin 98.11
3knv_A141 TNF receptor-associated factor 2; cross-brace, alt 97.26
3hcs_A170 TNF receptor-associated factor 6; cross-brace, bet 97.18
4ayc_A138 E3 ubiquitin-protein ligase RNF8; DNA damage, K63 96.29
1v87_A114 Deltex protein 2; ring-H2 domain, zinc-binding dom 96.25
2ecm_A55 Ring finger and CHY zinc finger domain- containing 96.06
3fl2_A124 E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA 96.06
2yur_A74 Retinoblastoma-binding protein 6; P53-associated c 95.9
2djb_A72 Polycomb group ring finger protein 6; PCGF6, ring 95.85
3lrq_A100 E3 ubiquitin-protein ligase TRIM37; structural gen 95.73
2y43_A99 E3 ubiquitin-protein ligase RAD18; DNA repair, met 95.44
1jm7_A112 BRCA1, breast cancer type 1 susceptibility protein 95.32
2ecy_A66 TNF receptor-associated factor 3; metal binding pr 95.27
2ckl_B165 Ubiquitin ligase protein RING2; BMI1, RING1B, poly 95.13
1chc_A68 Equine herpes virus-1 ring domain; viral protein; 95.05
2ckl_A108 Polycomb group ring finger protein 4; BMI1, RING1B 94.59
2kiz_A69 E3 ubiquitin-protein ligase arkadia; ring-H2 finge 94.57
1x4j_A75 Ring finger protein 38; structural genomics, NPPSF 94.3
2ect_A78 Ring finger protein 126; metal binding protein, st 94.17
1iym_A55 EL5; ring-H2 finger, ubiquitin ligase, DNA binding 94.03
2d8s_A80 Cellular modulator of immune recognition; C-MIR, m 93.49
2l0b_A91 E3 ubiquitin-protein ligase praja-1; zinc finger, 93.27
1e4u_A78 Transcriptional repressor NOT4; gene regulation, t 92.85
2ep4_A74 Ring finger protein 24; zinc binding, ubiquitin, E 92.56
2y1n_A389 E3 ubiquitin-protein ligase; ligase-transferase co 92.07
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 91.76
2ecg_A75 Baculoviral IAP repeat-containing protein 4; BIRC4 91.53
4ic3_A74 E3 ubiquitin-protein ligase XIAP; ring domain, zin 90.21
2ecj_A58 Tripartite motif-containing protein 39; TRIM39, ri 89.18
2ecl_A81 Ring-box protein 2; RNF7, ring domian, zinc-bindin 89.14
2ysj_A63 Tripartite motif-containing protein 31; ring-type 88.36
3dpl_R106 Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST 87.59
1bor_A56 Transcription factor PML; proto-oncogene, nuclear 87.35
2d8t_A71 Dactylidin, ring finger protein 146; RNF146, ring 87.24
2ea5_A68 Cell growth regulator with ring finger domain prot 86.83
4ap4_A133 E3 ubiquitin ligase RNF4; ligase-signalling protei 86.35
1wgm_A98 Ubiquitin conjugation factor E4A; ubiquitinating e 86.31
2ysl_A73 Tripartite motif-containing protein 31; ring-type 85.54
2yho_A79 E3 ubiquitin-protein ligase mylip; ligase, E2 liga 85.29
2ecw_A85 Tripartite motif-containing protein 30; metal bind 84.27
2egp_A79 Tripartite motif-containing protein 34; ZF-C3HC4 d 84.06
2ecv_A85 Tripartite motif-containing protein 5; metal bindi 83.42
2csy_A81 Zinc finger protein 183-like 1; ring finger protei 82.79
2vje_A64 E3 ubiquitin-protein ligase MDM2; proto-oncogene, 82.73
2ecn_A70 Ring finger protein 141; RNF141, ring domain, zinc 80.34
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Back     alignment and structure
Probab=98.42  E-value=7.5e-08  Score=78.19  Aligned_cols=60  Identities=17%  Similarity=0.179  Sum_probs=45.5

Q ss_pred             cCccccccccce--EEcchHHHhhcccCCCCcccCCcccccHHHHHHHHhhhCCCCCCCCCC
Q 016837          171 KCPMCRGAILGW--EVVEEARKYLNLKRRTCSRESCSFVGNYQELRRHARRVHPTTRPSDID  230 (381)
Q Consensus       171 ~CPLCRG~VkGW--tVVe~AR~yLN~KkRSCs~E~CsF~GtY~ELRKHaR~~HP~aRPseVD  230 (381)
                      .||+||..+.--  ......++.++.-+-.|...+|.++|+|.+|.+|.+.-|..+-|-.+|
T Consensus        55 ~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v~C~n~gC~~~~~~~~l~~H~~~c~~~~~~~~~~  116 (118)
T 3hct_A           55 KCPVDNEILLENQLFPDNFAKREILSLMVKCPNEGCLHKMELRHLEDHQAHCEFALLEHHHH  116 (118)
T ss_dssp             BCTTTCCBCCGGGCEECHHHHHHHHTSEEECSSTTCCCEEEGGGSGGGTSSSCC--------
T ss_pred             CCCCCCCCcCHHhcccCHHHHHHHccceeECCCCCCCCEEeeHHHHHHHHHchhhhhhhccc
Confidence            699999998763  344567788888888999999999999999999999999988877665
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Back     alignment and structure
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Back     alignment and structure
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Back     alignment and structure
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C Back     alignment and structure
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Back     alignment and structure
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Back     alignment and structure
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Back     alignment and structure
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Back     alignment and structure
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Back     alignment and structure
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Back     alignment and structure
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Back     alignment and structure
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Back     alignment and structure
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Back     alignment and structure
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Back     alignment and structure
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Back     alignment and structure
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Back     alignment and structure
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Back     alignment and structure
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A Back     alignment and structure
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Back     alignment and structure
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Back     alignment and structure
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Back     alignment and structure
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Back     alignment and structure
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Back     alignment and structure
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens} Back     alignment and structure
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Back     alignment and structure
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d1fbva479 CBL {Human (Homo sapiens) [TaxId: 9606]} 96.32
d1rmda286 V(D)J recombination activating protein 1 (RAG1), d 95.9
d1chca_68 Immediate early protein, IEEHV {Equine herpesvirus 95.21
d1vyxa_60 IE1B protein (ORF K3), N-terminal domain {Kaposi's 94.39
d1iyma_55 EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45 93.72
d1g25a_65 TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9 92.76
d1v87a_114 Deltex protein 2 RING-H2 domain {Mouse (Mus muscul 87.06
d1bora_56 Acute promyelocytic leukaemia proto-oncoprotein PM 83.41
d2c2la280 STIP1 homology and U box-containing protein 1, STU 81.78
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00066  Score=50.85  Aligned_cols=34  Identities=18%  Similarity=0.509  Sum_probs=25.1

Q ss_pred             ccccCccccCCCcchhhhhccccCCCCcccccCCCCccchhHHHHHH
Q 016837           48 DEISCPICMDHPHNAVLLICSSHDKGCRSYICDTSYRHSNCLDRYKK   94 (381)
Q Consensus        48 edatCPICME~PHNAVLLlCSSh~KGCRPYMCdTSyRHSNCLDQFkK   94 (381)
                      +...||||+|.+.++|+|-|            +-.| +..|++++-+
T Consensus        22 ~~~~C~IC~~~~~~~~~~~C------------gH~f-C~~Ci~~wl~   55 (79)
T d1fbva4          22 TFQLCKICAENDKDVKIEPC------------GHLM-CTSCLTSWQE   55 (79)
T ss_dssp             CTTBCTTTSSSBCCEECSSS------------CCEE-CHHHHHHHHH
T ss_pred             CCCCCccCCCcCCCeEEeCC------------CCee-eHHHHHHHHH
Confidence            34579999999999997755            3334 6789887643
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Back     information, alignment and structure
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Back     information, alignment and structure
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure