Citrus Sinensis ID: 016846

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEFGSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNHRQRHAGLVSRWLAWISSQSQSLPDVRSDRTTTDIV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHccEEEEEccccccccccccEEcccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHccEEEEEcccccccccEEEEEEcccccccEEEEcccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccEEEEEEcccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHcccHHHHHcccccccccccccccccccccccccEEEEEEcccccccccccccEEcccccccHHHHHHHHHHHHHHHHHccccccccHcccccccccc
Coil and Loop (DISEMBL)
MAVVVGVLTTMFSMTFLLLLYAKHCkrgnsvvgygtshsalinpsstnrknsgidrtvieslpifrfgalrghkdglecavcltrfeptevlrllpkckhafHVECVdtwldshstcplcryrvdpedILLSFEKNidsaeseaappepnpnhpefrrvsgrhssagefgscsqnptssrrsldgAFSKKREQAESVAvgcfdrprkdgllltdgltadrksseRRFEHRIIIsagagagggfsrrwsdvqpsdlLYLRSEMLlsdsrrfasgssrpsvkrQQQMLVPLAlqhrtssgtgidgggrangsgvinsrsvseitglsrfsnsgesyssritmsnrnnhrQRHAGLVSRWLAWISSQsqslpdvrsdrtttdiv
Flexible Loop (DISEMBL)
MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGtshsalinpsstnrknsgidrtVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNIDSAeseaappepnpnhPEFRRVSGRHSSAgefgscsqnptssrRSLDGAFSKkreqaesvavgcfdrprkdgllltdgltadrksserrfeHRIIIsagagagggfsrrWSDVQPSDLLYLRSEMLLSDSRRfasgssrpsvkrQQQMLVPLALQHrtssgtgidgggrangsgvinsrsvseitglsrfsnsgesyssRITMSNRNNHRQRHAGLVSRWLAWISsqsqslpdvrsdrtttdiv
Low Complexity Region (SEG)
MAVVVGVlttmfsmtfllllYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNIDsaeseaappepnpnhpeFRRVSGRHSSAGEFGSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKdgllltdgltADRKSSERRFEHRIIISagagagggFSRRWSDVQPSDLLYLRSEMLLSDSRRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNHRQRHAGLVSRWLAWISSQSQSLPDVRSDRTTTDIV
Disordered region (IsUnstruct)
**VVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALI***********IDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFE****************************************************************VGCFD******LLL******************************************************************************************************************************************AGLVSRWLAWI********************
Disordered Region (DISOPRED)
MAVVVGVLTTMFSMTFLLLLYAKHCKRG*****************************VIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD*********************************************************************************************************IIISAG*********************************************************************************************************************VSRWL***********************
Disordered Region (DISEMBL)
MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNID**************HPEFRR**************************************VAVGCFDRPRKDGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSR**************QQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNHRQRHAGLVSRWLAWISS******************
Disordered Region (DISPRO)
MAVVVGVLTTMFSMTFLLLLYAKHCKRG***********************SGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV***********************************************************************************DGLLLTDGLTADRKSSERRFEHRIIISAGAGAG*GFSRRWSDVQPSDLLYLRSEMLLSDSRR**********************************************RSVSEITGLSRFSNSG**YSSRITM******RQRHAGLVSRWLAWISS******************
Transmembrane Helix (TMHMM)
iHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEFGSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNHRQRHAGLVSRWLAWISSQSQSLPDVRSDRTTTDIV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q5EAE9	407	RING-H2 finger protein AT	yes	no	0.803	0.751	0.510	7e-81
Q9SL78	390	Putative RING-H2 finger p	no	no	0.737	0.720	0.335	8e-42
Q5XF85	432	E3 ubiquitin-protein liga	no	no	0.887	0.782	0.330	2e-41
Q8W571	323	RING-H2 finger protein AT	no	no	0.296	0.349	0.447	2e-23
Q84W40	404	RING-H2 finger protein AT	no	no	0.464	0.438	0.352	4e-23
Q9LF64	362	RING-H2 finger protein AT	no	no	0.425	0.447	0.338	4e-22
Q9ZV53	423	Putative RING-H2 finger p	no	no	0.194	0.174	0.573	3e-21
Q8RXX9	398	E3 ubiquitin-protein liga	no	no	0.309	0.296	0.4	4e-21
O64763	378	E3 ubiquitin-protein liga	no	no	0.359	0.362	0.345	8e-21
Q8L9T5	304	RING-H2 finger protein AT	no	no	0.188	0.236	0.575	1e-20

>sp|Q5EAE9|ATL43_ARATH RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2

 Score =  301 bits (770), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 201/394 (51%), Positives = 224/394 (56%), Gaps = 88/394 (22%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALIN----------PSSTNRK 50
           +AVV+ VLT  FS+TFLLLLY KHCKR N  V         I                RK
Sbjct: 58  IAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRK 117

Query: 51  NSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
           NSGIDR+VIESLP+FRFGAL GHKDGLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTW
Sbjct: 118 NSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTW 177

Query: 111 LDSHSTCPLCRYRVDPEDILLS------FEKNIDSAESEAAPPEPNPNHPEF---RRVSG 161
           LD+HSTCPLCRYRVDPEDILL       FE      ES +    P P    F    R+SG
Sbjct: 178 LDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNP-PGLTRFIPVSRISG 236

Query: 162 RHSSAGEFG----------SCSQNPTSSRRSLDGAFSKK---REQAESVAVGCFDR-PRK 207
           RHSSAGE            S   NP S RRSLD +        E++ESVAV C DR  RK
Sbjct: 237 RHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRK 296

Query: 208 DGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDS 267
           DGLL    L  +R+S E RFEHRIIIS     G    +RWS+V+PSDLLYLRSEM+LSD 
Sbjct: 297 DGLL----LIPNRESFEGRFEHRIIIS----GGNRDDQRWSEVRPSDLLYLRSEMILSDC 348

Query: 268 RRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRF 327
           R+ A+                               GGR     VIN RSVSE+TG+ R 
Sbjct: 349 RKLAAAE-----------------------------GGR----DVINGRSVSELTGIERR 375

Query: 328 SNSGESYSSRITMSNRNNHRQRHA-GLVSRWLAW 360
              G               RQR A  ++SRWLAW
Sbjct: 376 RRWG------------GEPRQRQATAVISRWLAW 397

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SL78|ATL12_ARATH Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana GN=ATL12 PE=3 SV=1

 Score =  171 bits (433), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 117/349 (33%), Positives = 173/349 (49%), Gaps = 68/349 (19%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAK--------HCKRGNSVVGYGTSHSALINPSSTNRKNS 52
           +A++ GV + +F++TF+LL+YAK                + +      L N SS   + S
Sbjct: 41  LAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQGLFNRSS---RFS 97

Query: 53  GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112
           G+D+  IESLP FRF AL+G K GLEC+VCL++FE  E+LRLLPKC+HAFH+ C+D WL+
Sbjct: 98  GLDKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLE 157

Query: 113 SHSTCPLCRYRVDPED---ILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEF 169
            H+TCPLCR RV+ ED   +L +   ++          E +       R  G +  +  F
Sbjct: 158 QHATCPLCRNRVNIEDDLSVLGNSSTSLRILNQSETREEDSRLEIYIEREEGTNDGSSRF 217

Query: 170 GSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLTADRKSSERRFEH 229
            S        R+ L  +   +RE  E++                     D K    +F H
Sbjct: 218 SSF-------RKILKKSLLLEREGNENI---------------------DEKKLMHKFNH 249

Query: 230 RIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLS-DSRRFASGS--SRPSVKRQQQM- 285
           RI++S        F  RWS++  SDL +L SEML S  S RF+S     R +++ ++ M 
Sbjct: 250 RIVVSDAV-----FKNRWSNITSSDLTFLTSEMLNSVSSDRFSSVDRVHRGNLRDKEDME 304

Query: 286 LVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESY 334
           +  + ++H+ SS                  R+VSEIT +SR    G SY
Sbjct: 305 MKRMLIKHKDSS-----------------RRTVSEITTVSREKAVGGSY 336

Arabidopsis thaliana (taxid: 3702)

>sp|Q5XF85|ATL42_ARATH E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana GN=ATL42 PE=1 SV=2

 Score =  170 bits (431), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 137/414 (33%), Positives = 197/414 (47%), Gaps = 76/414 (18%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCK------RGNSVVGYGTSHSALINPSSTNRKN--S 52
           +AVV GVL  MF++TF+LL+YAK C        G+           +    ST   +  S
Sbjct: 37  LAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFS 96

Query: 53  GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112
           G+D+T IESLP+FRF AL+G K GL+C+VCL++FE  E+LRLLPKC+HAFH+ C+D WL+
Sbjct: 97  GLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLE 156

Query: 113 SHSTCPLCRYRVDPEDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEFGSC 172
            H+TCPLCR RV  E+         DS+           N  E R  S            
Sbjct: 157 QHATCPLCRDRVSMEE---------DSSVLTNGNSFRFLNQSEIREDSSLELYIEREEEE 207

Query: 173 SQNPT-----SSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLT-ADRKSSERR 226
            +        SSR S+  +F K       + +G      K+  LL + +   D K    +
Sbjct: 208 ERIHREELSGSSRFSIGESFRK------ILKLG-----NKEKTLLDEHVNDKDEKKLMHK 256

Query: 227 FEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLS-DSRRFASGSSRPSVKR---- 281
           F HRI++S        F  RWS+V  SDL++L SEM+ S  S RF   SS   VKR    
Sbjct: 257 FNHRIVVSDVV-----FKNRWSNVSSSDLMFLNSEMVNSISSERF---SSLDHVKRGDEE 308

Query: 282 --------QQQMLVPLALQHRTSSGTGI------DGGGRANGSGVI-NSRSVSEITGLSR 326
                   +++M     L+++ +S T +      D G ++    +    RSVS+IT + R
Sbjct: 309 DQIGILRIKEEMEAKRMLENKLTSMTTMFSSENGDSGSKSRSVMIEPGRRSVSDITAVPR 368

Query: 327 FS---------NSGESYSSRITMSNRNNHRQRHAGL-----VSRWLAWISSQSQ 366
            S         ++ E+ S+     N    R+R   L      ++W A    +SQ
Sbjct: 369 LSISIHGDCSGSAAETASALQNGGNETEERRRRLWLPIARKTAQWFANREKRSQ 422

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8W571|ATL32_ARATH RING-H2 finger protein ATL32 OS=Arabidopsis thaliana GN=ATL32 PE=2 SV=3

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 76/123 (61%), Gaps = 10/123 (8%)

Query: 4   VVGVLTTMFSMTFLLLLYAKHCKRGN--SVVGYGTSHSALINPSSTNRKNSGIDRTVIES 61
           V  VL T+F +T LL +Y +HC R N  S   Y  + +   N  S+ R   G+D  V+ES
Sbjct: 49  VFAVLVTLFFLTGLLSVYIRHCARSNPDSSTRYFRNRA---NDGSSRR--GGLDNAVVES 103

Query: 62  LPIFRFGALRGHKDG---LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCP 118
            P+F + +++  K G   LECA+CL   E  E +RLLP C H FH++C+DTWL SH+TCP
Sbjct: 104 FPVFAYSSVKESKIGSKDLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCP 163

Query: 119 LCR 121
           +CR
Sbjct: 164 VCR 166

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W40|ATL11_ARATH RING-H2 finger protein ATL11 OS=Arabidopsis thaliana GN=ATL11 PE=2 SV=2

 Score =  109 bits (272), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 67/190 (35%), Positives = 100/190 (52%), Gaps = 13/190 (6%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNS-GIDRTVI 59
           MA+++ VL ++F       +Y + C      + YG  + A  N  +TNR+ + G+D ++I
Sbjct: 63  MAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAG-NWLATNRQQARGLDASII 121

Query: 60  ESLPIFRFGA---LRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST 116
           E+ P F++     LR  K+ LEC+VCL  FE  E LRL+PKC H FH  C+D WL SH+T
Sbjct: 122 ETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTT 181

Query: 117 CPLCRYRVDP---EDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEFGSCS 173
           CPLCR  + P   E I+     +I        PP  +PN    R +    +   E  + +
Sbjct: 182 CPLCRADLIPVPGESIV-----SIQIPGLVNDPPGSDPNGDRIRSLGSPDARLIESVALT 236

Query: 174 QNPTSSRRSL 183
            N +  RRS+
Sbjct: 237 CNQSMPRRSM 246

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LF64|ATL52_ARATH RING-H2 finger protein ATL52 OS=Arabidopsis thaliana GN=ATL52 PE=2 SV=1

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 62/183 (33%), Positives = 98/183 (53%), Gaps = 21/183 (11%)

Query: 4   VVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGT---SHSALINPSSTNR---KNSGIDRT 57
           ++G+LT+   +     L +K+C R +      T   +H+     SST R      G++ +
Sbjct: 61  LIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGLNES 120

Query: 58  VIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
           +I+S+ ++++ +  G  DG +C+VCL+ FE  E LRLLPKC HAFH+ C+DTWL SHS C
Sbjct: 121 MIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSHSNC 180

Query: 118 PLCRYRV----DP-----EDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGE 168
           PLCR  V    +P     +++ +      +SA    +  E N N      ++G  S  G+
Sbjct: 181 PLCRAFVTGVNNPTASVGQNVSVVVANQSNSAHQTGSVSEINLN------LAGYESQTGD 234

Query: 169 FGS 171
           F S
Sbjct: 235 FDS 237

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZV53|ATL49_ARATH Putative RING-H2 finger protein ATL49 OS=Arabidopsis thaliana GN=ATL49 PE=3 SV=1

 Score =  103 bits (256), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 57/75 (76%), Gaps = 1/75 (1%)

Query: 48  NRKNSGIDRTVIESLPIFRFGALRGHK-DGLECAVCLTRFEPTEVLRLLPKCKHAFHVEC 106
           N  +SG+D+++I++LP+F + ++ G K    +C VCL  FE  + LRLLPKC HAFHVEC
Sbjct: 94  NLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVEC 153

Query: 107 VDTWLDSHSTCPLCR 121
           +DTWL SHSTCPLCR
Sbjct: 154 IDTWLLSHSTCPLCR 168

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RXX9|ATL6_ARATH E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana GN=ATL6 PE=1 SV=2

 Score =  102 bits (254), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 69/125 (55%), Gaps = 7/125 (5%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSST-NRKNSGIDRTVI 59
           MAV+V +L           +Y +HC   + V   G S +      +T N    G+D +V+
Sbjct: 49  MAVIVVILIAALFFMGFFSIYFRHC---SGVPDAGVSPAGGARSRATVNAAARGLDVSVV 105

Query: 60  ESLPIFRFGALRGHKDG---LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST 116
           E+ P F +  ++  K G   LECA+CL  FE  E LRLLPKC H FH  C+D WL++H T
Sbjct: 106 ETFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVT 165

Query: 117 CPLCR 121
           CP+CR
Sbjct: 166 CPVCR 170

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the plant C/N response and the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O64763|ATL9_ARATH E3 ubiquitin-protein ligase ATL9 OS=Arabidopsis thaliana GN=ATL9 PE=1 SV=1

 Score =  101 bits (252), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 84/159 (52%), Gaps = 22/159 (13%)

Query: 4   VVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNS----------G 53
           VV V+T +F + F ++  +  C+R N+      S S++   +  + ++           G
Sbjct: 51  VVVVITVLFLVIFFMVFGSIFCRRSNAQF----SRSSIFRSTDADAESQVVRIRRLTARG 106

Query: 54  IDRTVIESLPIFRFG---ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
           +D   IE+ P F +    A+R  K G+ECAVCL  FE  E LRL+P C H FH +CVD W
Sbjct: 107 LDAEAIETFPTFLYSEVKAVRIGKGGVECAVCLCEFEDDETLRLMPPCCHVFHADCVDVW 166

Query: 111 LDSHSTCPLCRYRVDPEDILLSFEKNIDSAESEAAPPEP 149
           L  HSTCPLCR      D++L+ + + D +    +  +P
Sbjct: 167 LSEHSTCPLCR-----ADLVLNQQGDDDDSTESYSGTDP 200

E3 ubiquitin-protein ligase able to catalyze polyubiquitination with ubiquitin-conjugating enzyme E2 UBC8 in vitro. May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8L9T5|ATL2_ARATH RING-H2 finger protein ATL2 OS=Arabidopsis thaliana GN=ATL2 PE=2 SV=2

 Score =  100 bits (250), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/73 (57%), Positives = 53/73 (72%), Gaps = 1/73 (1%)

Query: 53  GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112
           G+D  VI+SLP+F F     HKD +ECAVCL+ FE +E  R+LP C+H FHV+C+D W  
Sbjct: 94  GLDPNVIKSLPVFTFSD-ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 152

Query: 113 SHSTCPLCRYRVD 125
           SHSTCPLCR  V+
Sbjct: 153 SHSTCPLCRSLVE 165

May be involved in the early steps of the plant defense signaling pathway.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
225445990	404	PREDICTED: RING-H2 finger protein ATL43-	0.871	0.821	0.607	1e-105
297735430	457	unnamed protein product [Vitis vinifera]	0.863	0.719	0.606	1e-104
255540603	493	ring finger protein, putative [Ricinus c	0.926	0.716	0.531	1e-103
449466065	313	PREDICTED: RING-H2 finger protein ATL43-	0.719	0.875	0.576	4e-85
449506660	391	PREDICTED: RING-H2 finger protein ATL43-	0.719	0.700	0.576	1e-84
297806595	352	hypothetical protein ARALYDRAFT_908496 [	0.803	0.869	0.498	2e-82
302121713	485	ring H2 finger protein [Hypericum perfor	0.874	0.686	0.481	3e-81
68565111	407	RecName: Full=RING-H2 finger protein ATL	0.803	0.751	0.510	5e-79
42567675	353	RING-H2 finger protein ATL43 [Arabidopsi	0.803	0.866	0.510	1e-78
326524155	451	predicted protein [Hordeum vulgare subsp	0.779	0.658	0.434	3e-67

>gi|225445990|ref|XP_002267344.1| PREDICTED: RING-H2 finger protein ATL43-like [Vitis vinifera]

 Score =  388 bits (996), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 238/392 (60%), Positives = 263/392 (67%), Gaps = 60/392 (15%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIE 60
           +AV+VGVLTTMFS+TFLLLLYAKHCKRGN VV  GT        SS  RKNSGIDRTVIE
Sbjct: 56  IAVIVGVLTTMFSITFLLLLYAKHCKRGNGVVYTGTP-----PLSSAARKNSGIDRTVIE 110

Query: 61  SLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120
           SLP+FRF +LRG KDGLECAVCL RFEPTE+LRLLPKCKHAFHVECVDTWLD+HSTCPLC
Sbjct: 111 SLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLC 170

Query: 121 RYRVDPEDILLSFEKNIDSA------ESEAAPPEPNPNHPEFRRVSGRHSSAGEFGS--- 171
           RYRVDPEDILL  E  I  A        E   P+  P +PE RRVSGRHSSAGE  S   
Sbjct: 171 RYRVDPEDILLVEEPKISVAPPPEPDPPEVEKPDAEPRNPEVRRVSGRHSSAGERRSGLV 230

Query: 172 --CSQNP---TSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLTADRKSSERR 226
                 P   TSSRRSLD + S  R++ E VAVGCFDRPRKD LLLT   + DR S ERR
Sbjct: 231 QIVLHKPDETTSSRRSLDSSSSSSRKRNEPVAVGCFDRPRKDELLLT---SEDRNSFERR 287

Query: 227 FEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASGSSRPSVKRQQQML 286
            +HRII+S  A   GGF +RWSDVQPSDLLYLRSEM++SD+RR                 
Sbjct: 288 LDHRIIVS--AAGSGGFHQRWSDVQPSDLLYLRSEMIISDNRRL---------------- 329

Query: 287 VPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNH 346
                    SS  G   GG  +G  VINSRSVSEITGLSR    G +Y          +H
Sbjct: 330 ---------SSCHGTIEGGSWSGRSVINSRSVSEITGLSRL---GSNYHHL-----DRHH 372

Query: 347 RQRHAGLVSRWLAWISSQSQSLPDVRSDRTTT 378
           +QR AG+VSRWLAWI   SQS P VRS+R  T
Sbjct: 373 QQRQAGVVSRWLAWI---SQSRPSVRSERAVT 401

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297735430|emb|CBI17870.3| unnamed protein product [Vitis vinifera]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 236/389 (60%), Positives = 261/389 (67%), Gaps = 60/389 (15%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIE 60
           +AV+VGVLTTMFS+TFLLLLYAKHCKRGN VV  GT        SS  RKNSGIDRTVIE
Sbjct: 56  IAVIVGVLTTMFSITFLLLLYAKHCKRGNGVVYTGTP-----PLSSAARKNSGIDRTVIE 110

Query: 61  SLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120
           SLP+FRF +LRG KDGLECAVCL RFEPTE+LRLLPKCKHAFHVECVDTWLD+HSTCPLC
Sbjct: 111 SLPVFRFASLRGQKDGLECAVCLNRFEPTEILRLLPKCKHAFHVECVDTWLDAHSTCPLC 170

Query: 121 RYRVDPEDILLSFEKNIDSAESEAAPP------EPNPNHPEFRRVSGRHSSAGEFGS--- 171
           RYRVDPEDILL  E  I  A      P      +  P +PE RRVSGRHSSAGE  S   
Sbjct: 171 RYRVDPEDILLVEEPKISVAPPPEPDPPEVEKPDAEPRNPEVRRVSGRHSSAGERRSGLV 230

Query: 172 --CSQNP---TSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLTDGLTADRKSSERR 226
                 P   TSSRRSLD + S  R++ E VAVGCFDRPRKD LLLT   + DR S ERR
Sbjct: 231 QIVLHKPDETTSSRRSLDSSSSSSRKRNEPVAVGCFDRPRKDELLLT---SEDRNSFERR 287

Query: 227 FEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASGSSRPSVKRQQQML 286
            +HRII+SA     GGF +RWSDVQPSDLLYLRSEM++SD+RR                 
Sbjct: 288 LDHRIIVSAAGS--GGFHQRWSDVQPSDLLYLRSEMIISDNRRL---------------- 329

Query: 287 VPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNH 346
                    SS  G   GG  +G  VINSRSVSEITGLSR    G +Y          +H
Sbjct: 330 ---------SSCHGTIEGGSWSGRSVINSRSVSEITGLSRL---GSNYHHL-----DRHH 372

Query: 347 RQRHAGLVSRWLAWISSQSQSLPDVRSDR 375
           +QR AG+VSRWLAWI   SQS P VRS+R
Sbjct: 373 QQRQAGVVSRWLAWI---SQSRPSVRSER 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540603|ref|XP_002511366.1| ring finger protein, putative [Ricinus communis] gi|223550481|gb|EEF51968.1| ring finger protein, putative [Ricinus communis]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 230/433 (53%), Positives = 268/433 (61%), Gaps = 80/433 (18%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIE 60
           +AV+VGVLTTMFS+T LLLLYAKHCKR +    +          ++  RKNSGIDR VIE
Sbjct: 79  IAVIVGVLTTMFSITLLLLLYAKHCKRAHIYNSFNNGGGGTGGQTAEARKNSGIDRAVIE 138

Query: 61  SLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120
           SLPIFRF +LRG KDGLECAVCLTRFEP EVLRLLPKCKHAFHVECVDTWLD+HSTCPLC
Sbjct: 139 SLPIFRFSSLRGQKDGLECAVCLTRFEPPEVLRLLPKCKHAFHVECVDTWLDAHSTCPLC 198

Query: 121 RYRVDPEDILLSFEKNIDSAESEAAPPEPNPNHPEF----RRVSGRHSSAGEFGS----- 171
           RYRVDPED+LL  +    +  +  + P P     E     RR+SGRHSSAGE  S     
Sbjct: 199 RYRVDPEDVLLIDQDKDPATTTNISLPPPQQQSTEIHGGGRRISGRHSSAGEKASGFALS 258

Query: 172 --CSQNPTSS-------RRSLDGAFSKKREQ------AESVAVGCFDR----PRKDGLLL 212
               Q P+++       RRSLD +FS K+ +       ESVAVGCFDR     RKDGLLL
Sbjct: 259 QIVVQRPSATEQTTWFARRSLD-SFSMKKNKNNHITRNESVAVGCFDRYQSHQRKDGLLL 317

Query: 213 --------------TDGLTADRKSS------------ERRFEHRIIISAGAGAGGGFSRR 246
                            L + R S+            + RFEHRII+S     G     R
Sbjct: 318 LTNNSNGDGDSDGDDHSLESRRTSTASVNAGAGAGVDKTRFEHRIIVS-----GNASDER 372

Query: 247 WSDVQPSDLLYLRSEMLLSDSRRFASGS-SRPSVKRQQQMLVPLALQHRTSSGTGIDGGG 305
           WSDV PSDLLYLRSEM+LSD+RRF+  S SRPSV R+         QH       +  G 
Sbjct: 373 WSDVHPSDLLYLRSEMILSDNRRFSMTSGSRPSVGRR---------QHHQKQQNAVVKGP 423

Query: 306 RANGSGVINSRSVSEITGLSRFSNSGESYSSRITMSNRNNHRQRHAGLVSRWLAWISSQS 365
            ++G  VIN RSVSEITGL+RFS+  ES +SR       +HR+R AG+VSRWLAWISSQS
Sbjct: 424 SSDGRSVINGRSVSEITGLNRFSDR-ESNNSR-------HHRERQAGVVSRWLAWISSQS 475

Query: 366 QSLPDVRSDRTTT 378
              P VRS RTTT
Sbjct: 476 H--PAVRSFRTTT 486

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466065|ref|XP_004150747.1| PREDICTED: RING-H2 finger protein ATL43-like [Cucumis sativus]

 Score =  321 bits (822), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 180/312 (57%), Positives = 213/312 (68%), Gaps = 38/312 (12%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNS--VVGYGTSHSALIN-PSSTNRKNSGIDRT 57
           MAVVVGVLTT FS+TFLLLLYAKHCKRGN+  VVGY    + ++  PS + RKNSGID+T
Sbjct: 1   MAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVVGYSMRPNTMMGVPSFSTRKNSGIDQT 60

Query: 58  VIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
           VIESLPIFRFG+L G K+GLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTWLD+HSTC
Sbjct: 61  VIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTC 120

Query: 118 PLCRYRVDPEDILLSFEKNI-------------DSAESEAAPPEPNPNHPEFR------- 157
           PLCRYRVDPED+LL  + NI                  E+   +   N  + R       
Sbjct: 121 PLCRYRVDPEDVLLVEDVNIFLHDQPPPPPQPPPPPPRESNSKDVVLNLEQGRRSGKAGS 180

Query: 158 -RVSGRHSSAGEF---GSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLT 213
            RVSGRHSS GE     S  ++P   RRSLD       ++ E+V+VGCFDR RKDGLLL 
Sbjct: 181 GRVSGRHSSVGEKRTGESSYRDPALLRRSLDS------KRTETVSVGCFDRHRKDGLLLP 234

Query: 214 DGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASG 273
           +  T ++  ++ R EHRII+S           RWSDVQ SDLLYLRSEM++SDSRRF+  
Sbjct: 235 EEKT-NQNQNQNRLEHRIIVSPKVPV----VERWSDVQGSDLLYLRSEMIISDSRRFSVA 289

Query: 274 SSRPSVKRQQQM 285
           S    +KRQ++M
Sbjct: 290 SLPVELKRQRRM 301

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506660|ref|XP_004162811.1| PREDICTED: RING-H2 finger protein ATL43-like [Cucumis sativus]

 Score =  320 bits (819), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 180/312 (57%), Positives = 213/312 (68%), Gaps = 38/312 (12%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNS--VVGYGTSHSALIN-PSSTNRKNSGIDRT 57
           MAVVVGVLTT FS+TFLLLLYAKHCKRGN+  VVGY    + ++  PS + RKNSGID+T
Sbjct: 79  MAVVVGVLTTTFSITFLLLLYAKHCKRGNAAVVVGYSMRPNTMMGVPSFSTRKNSGIDQT 138

Query: 58  VIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
           VIESLPIFRFG+L G K+GLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTWLD+HSTC
Sbjct: 139 VIESLPIFRFGSLSGQKEGLECAVCLNRFEPTEVLRLLPKCKHAFHVECVDTWLDAHSTC 198

Query: 118 PLCRYRVDPEDILLSFEKNI-------------DSAESEAAPPEPNPNHPEFR------- 157
           PLCRYRVDPED+LL  + NI                  E+   +   N  + R       
Sbjct: 199 PLCRYRVDPEDVLLVEDVNIFLHDQPPPPPQPPPPPPRESNSKDVVLNLEQGRRSGKAGS 258

Query: 158 -RVSGRHSSAGEF---GSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFDRPRKDGLLLT 213
            RVSGRHSS GE     S  ++P   RRSLD       ++ E+V+VGCFDR RKDGLLL 
Sbjct: 259 GRVSGRHSSVGEKRTGESSYRDPALLRRSLDS------KRTETVSVGCFDRHRKDGLLLP 312

Query: 214 DGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSRRFASG 273
           +  T ++  ++ R EHRII+S           RWSDVQ SDLLYLRSEM++SDSRRF+  
Sbjct: 313 EEKT-NQNQNQNRLEHRIIVSPKVPV----VERWSDVQGSDLLYLRSEMIISDSRRFSVA 367

Query: 274 SSRPSVKRQQQM 285
           S    +KRQ++M
Sbjct: 368 SLPVELKRQRRM 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297806595|ref|XP_002871181.1| hypothetical protein ARALYDRAFT_908496 [Arabidopsis lyrata subsp. lyrata] gi|297317018|gb|EFH47440.1| hypothetical protein ARALYDRAFT_908496 [Arabidopsis lyrata subsp. lyrata]

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 196/393 (49%), Positives = 224/393 (56%), Gaps = 87/393 (22%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALIN----------PSSTNRK 50
           +AVV+ VLT  FS+TFLLLLY KHCKR +  V         I+               RK
Sbjct: 4   IAVVIAVLTAFFSITFLLLLYVKHCKRRSGTVYVNHPQRFAISRYGGGYYNGGGVGGGRK 63

Query: 51  NSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
           NSGIDR+VIESLP+FRFGAL GHKDGLECAVCL RFEP EVLRLLPKCKHAFHVECVDTW
Sbjct: 64  NSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPAEVLRLLPKCKHAFHVECVDTW 123

Query: 111 LDSHSTCPLCRYRVDPEDILLS------FEKNIDSAESEAA--PPEPNPNHPEFRRVSGR 162
           LD+HSTCPLCRYRVDPEDILL       FE      ES +   PP      P   R+SGR
Sbjct: 124 LDAHSTCPLCRYRVDPEDILLIGDCNSWFELRFSKEESNSISNPPGLTRFVP-VSRISGR 182

Query: 163 HSSAGEFGS----------CSQNPTSSRRSLDGAFSKK---REQAESVAVGCFDR-PRKD 208
           HSSAGE  S             NP S RRSLD +        E++ESVAV C DR  RKD
Sbjct: 183 HSSAGERASRLNEIRTSSSSKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRKD 242

Query: 209 GLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDSR 268
           GLL    L  +++S E RFEHRIII+ G        +RWS+V+P+DLLYLRSEM+LSD R
Sbjct: 243 GLL----LIPNQESMEGRFEHRIIIAGGNRD----DQRWSEVRPADLLYLRSEMILSDCR 294

Query: 269 RFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRFS 328
           + A+                               GGR     VIN RSVSE+TG+ R  
Sbjct: 295 KLAAAE-----------------------------GGR----DVINGRSVSELTGIERRR 321

Query: 329 NSGESYSSRITMSNRNNHRQRHA-GLVSRWLAW 360
             G               RQR A  ++SRWLAW
Sbjct: 322 RWG------------GEPRQRQATAVISRWLAW 342

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302121713|gb|ADK92879.1| ring H2 finger protein [Hypericum perforatum]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 204/424 (48%), Positives = 240/424 (56%), Gaps = 91/424 (21%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALINPSS--TNRKNSGIDRTV 58
           +AVVV VLT +FS+TFLL+LYA+HCK G  V G GTS + + + ++  T RKNSGIDR V
Sbjct: 76  VAVVVAVLTCIFSITFLLVLYARHCKVG--VTGGGTSSAGMTSAATLATGRKNSGIDRAV 133

Query: 59  IESLPIFRFGALRG-HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
           +ESLP+FRFG+L G  K+GLECAVCL RFE +EVLRLLPKCKHAFHVECVDTWLD HSTC
Sbjct: 134 VESLPVFRFGSLSGRQKEGLECAVCLNRFEGSEVLRLLPKCKHAFHVECVDTWLDGHSTC 193

Query: 118 PLCRYRVDPEDILLSFEKNIDSAESEAAPPEPNPNHPEFRRVSGRHSSAGEFG--SCSQN 175
           PLCRYRVDPED+LL     +D     +   + +     F RVSGRHSSAGE    S S  
Sbjct: 194 PLCRYRVDPEDVLLV----LDPHHPLSRAAQVDDVETGFHRVSGRHSSAGERPPRSLSST 249

Query: 176 PTSSRRSLDG-AFSKKREQAES---VAVGCFDR-PRKDGLLLTDGLTADRKSSER----- 225
             S RRSLDG  + KK   A S    A GCFDR  RKDG+LLT       K +E      
Sbjct: 250 SFSLRRSLDGFGWRKKSTVATSETPTAGGCFDRYHRKDGMLLTREEAPTEKIAEETETPK 309

Query: 226 --------------------------------RFEHRIIISAGAGAGGGFSRRWSDVQPS 253
                                           R EHRI +    GA GG   RWSDVQPS
Sbjct: 310 NINIINNNNNSNSNSDEIVVEVEADDDVERRTRLEHRINVVVSGGAHGG--ERWSDVQPS 367

Query: 254 DLLYLRSEMLLSDSRRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVI 313
           DLLYLRSEML+                    M+        +           +NG  VI
Sbjct: 368 DLLYLRSEMLM--------------------MMSSRRCSPSS-----------SNGRSVI 396

Query: 314 NSRSVSEITGLSRFSNSGES----YSSRITMSNRNNHRQRHAGLVSRWLAWISSQSQSLP 369
           N+RSVSEITGLSRF  S  S         +++    HR+R AGL+SRWL W+SS S S+P
Sbjct: 397 NTRSVSEITGLSRFHPSFASGRDVREGTRSVNYDGRHRERQAGLLSRWLGWVSS-SHSVP 455

Query: 370 DVRS 373
            VRS
Sbjct: 456 AVRS 459

Source: Hypericum perforatum

Species: Hypericum perforatum

Genus: Hypericum

Family: Hypericaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|68565111|sp|Q5EAE9.2|ATL43_ARATH RecName: Full=RING-H2 finger protein ATL43; Flags: Precursor gi|9759106|dbj|BAB09675.1| unnamed protein product [Arabidopsis thaliana]

 Score =  301 bits (770), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 201/394 (51%), Positives = 224/394 (56%), Gaps = 88/394 (22%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALIN----------PSSTNRK 50
           +AVV+ VLT  FS+TFLLLLY KHCKR N  V         I                RK
Sbjct: 58  IAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRK 117

Query: 51  NSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
           NSGIDR+VIESLP+FRFGAL GHKDGLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTW
Sbjct: 118 NSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTW 177

Query: 111 LDSHSTCPLCRYRVDPEDILLS------FEKNIDSAESEAAPPEPNPNHPEF---RRVSG 161
           LD+HSTCPLCRYRVDPEDILL       FE      ES +    P P    F    R+SG
Sbjct: 178 LDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNP-PGLTRFIPVSRISG 236

Query: 162 RHSSAGEFG----------SCSQNPTSSRRSLDGAFSKK---REQAESVAVGCFDR-PRK 207
           RHSSAGE            S   NP S RRSLD +        E++ESVAV C DR  RK
Sbjct: 237 RHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRK 296

Query: 208 DGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDS 267
           DGLL    L  +R+S E RFEHRIIIS     G    +RWS+V+PSDLLYLRSEM+LSD 
Sbjct: 297 DGLL----LIPNRESFEGRFEHRIIIS----GGNRDDQRWSEVRPSDLLYLRSEMILSDC 348

Query: 268 RRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRF 327
           R+ A+                               GGR     VIN RSVSE+TG+ R 
Sbjct: 349 RKLAAAE-----------------------------GGR----DVINGRSVSELTGIERR 375

Query: 328 SNSGESYSSRITMSNRNNHRQRHA-GLVSRWLAW 360
              G               RQR A  ++SRWLAW
Sbjct: 376 RRWG------------GEPRQRQATAVISRWLAW 397

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42567675|ref|NP_196200.2| RING-H2 finger protein ATL43 [Arabidopsis thaliana] gi|58743300|gb|AAW81728.1| At5g05810 [Arabidopsis thaliana] gi|61656157|gb|AAX49381.1| At5g05810 [Arabidopsis thaliana] gi|332003545|gb|AED90928.1| RING-H2 finger protein ATL43 [Arabidopsis thaliana]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 201/394 (51%), Positives = 224/394 (56%), Gaps = 88/394 (22%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNSVVGYGTSHSALIN----------PSSTNRK 50
           +AVV+ VLT  FS+TFLLLLY KHCKR N  V         I                RK
Sbjct: 4   IAVVIAVLTAFFSLTFLLLLYVKHCKRRNGSVYVNHPQRFAITRYGGGYYNGGGVVGGRK 63

Query: 51  NSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
           NSGIDR+VIESLP+FRFGAL GHKDGLECAVCL RFEPTEVLRLLPKCKHAFHVECVDTW
Sbjct: 64  NSGIDRSVIESLPVFRFGALSGHKDGLECAVCLARFEPTEVLRLLPKCKHAFHVECVDTW 123

Query: 111 LDSHSTCPLCRYRVDPEDILLS------FEKNIDSAESEAAPPEPNPNHPEF---RRVSG 161
           LD+HSTCPLCRYRVDPEDILL       FE      ES +    P P    F    R+SG
Sbjct: 124 LDAHSTCPLCRYRVDPEDILLIGDCNSWFELQFSKDESNSVNNNP-PGLTRFIPVSRISG 182

Query: 162 RHSSAGEFG----------SCSQNPTSSRRSLDGAFSKK---REQAESVAVGCFDR-PRK 207
           RHSSAGE            S   NP S RRSLD +        E++ESVAV C DR  RK
Sbjct: 183 RHSSAGERASRLNEIRTSSSYKSNPMSFRRSLDSSLKVNDAGEEKSESVAVNCLDRLQRK 242

Query: 208 DGLLLTDGLTADRKSSERRFEHRIIISAGAGAGGGFSRRWSDVQPSDLLYLRSEMLLSDS 267
           DGLL    L  +R+S E RFEHRIIIS G        +RWS+V+PSDLLYLRSEM+LSD 
Sbjct: 243 DGLL----LIPNRESFEGRFEHRIIISGGNRD----DQRWSEVRPSDLLYLRSEMILSDC 294

Query: 268 RRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSRF 327
           R+ A+                               GGR     VIN RSVSE+TG+ R 
Sbjct: 295 RKLAAAE-----------------------------GGR----DVINGRSVSELTGIERR 321

Query: 328 SNSGESYSSRITMSNRNNHRQRHA-GLVSRWLAW 360
              G               RQR A  ++SRWLAW
Sbjct: 322 RRWG------------GEPRQRQATAVISRWLAW 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326524155|dbj|BAJ97088.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  261 bits (668), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 157/361 (43%), Positives = 203/361 (56%), Gaps = 64/361 (17%)

Query: 1   MAVVVGVLTTMFSMTFLLLLYAKHCKRGNS-VVGYGTSHSALINPSSTNRKNSGIDRTVI 59
           +AVVVG+LT++FS+TFLLLLYAKHCKR  +   G   S       ++  R+NSG++R V+
Sbjct: 86  VAVVVGILTSVFSITFLLLLYAKHCKRSAAESSGPYGSGGGSGGGAAGERRNSGVERAVV 145

Query: 60  ESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL 119
           ESLP+FRFGALRG K GLECAVCL RFE TE LRLLPKC+H FHVECVDTWLD+HSTCPL
Sbjct: 146 ESLPVFRFGALRGQKAGLECAVCLGRFESTEALRLLPKCRHGFHVECVDTWLDAHSTCPL 205

Query: 120 CRYRVDPEDILLSFEKNIDSAESEAAPPE----------------------PNPNH-PEF 156
           CR RVDPED+LL  E    S      PPE                      P P H P +
Sbjct: 206 CRSRVDPEDVLLLPEPPKPSTTGPPEPPEQKAAAAAAVATVKDKEKDAALAPTPAHFPAW 265

Query: 157 RRVSGRHSSAGEFGSCSQNPTSSRRSLDGAFSKKREQAESVAVGCFD--RPRKDGLLLTD 214
           RR++GRHS+          PT SRRS D           +  VGCFD  + RKD +L+ +
Sbjct: 266 RRIAGRHSTGSVRAPGRVGPT-SRRSAD--LEVGGGDGGAATVGCFDSAKVRKDRVLMVE 322

Query: 215 GLTA----DRKSSERRFEHRIIISAGAGA----GGGFSRRWSDVQPSDLLYLRSEMLLSD 266
              A    D  + +RRF HRI++S   G          +RWSD++P+DL+++RSEML+++
Sbjct: 323 PAAAVAEPDPVAFDRRFGHRILVSTACGCDDETAPAAKQRWSDLRPADLMFVRSEMLVTE 382

Query: 267 SRRFASGSSRPSVKRQQQMLVPLALQHRTSSGTGIDGGGRANGSGVINSRSVSEITGLSR 326
           + R+                         S    ++ G R  G   I+ R +SEI G+SR
Sbjct: 383 TGRY-------------------------SCSAAVNSGNR--GRTEISGRCLSEIAGVSR 415

Query: 327 F 327
            
Sbjct: 416 L 416

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2061698	390	AT2G20030 [Arabidopsis thalian	0.338	0.330	0.470	1.3e-38
TAIR|locus:2123558	432	AT4G28890 [Arabidopsis thalian	0.335	0.296	0.470	1.9e-37
TAIR|locus:2118666	472	AT4G30400 [Arabidopsis thalian	0.186	0.150	0.569	1.5e-21
TAIR|locus:2140069	323	AT4G40070 [Arabidopsis thalian	0.251	0.297	0.443	6.3e-21
TAIR|locus:2207026	404	AT1G72200 [Arabidopsis thalian	0.328	0.309	0.4	7.8e-21
TAIR|locus:2054049	423	MEE16 "maternal effect embryo	0.194	0.174	0.573	1e-20
TAIR|locus:2089398	304	ATL2 "TOXICOS EN LEVADURA 2" [	0.188	0.236	0.575	1.3e-20
TAIR|locus:2151421	362	AT5G17600 [Arabidopsis thalian	0.317	0.334	0.370	1.9e-20
TAIR|locus:2199902	369	AT1G23980 [Arabidopsis thalian	0.186	0.192	0.535	2.5e-19
TAIR|locus:2096309	398	ATL6 "Arabidopsis toxicos en l	0.312	0.298	0.387	4.1e-19

TAIR|locus:2061698 AT2G20030 [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 64/136 (47%), Positives = 82/136 (60%)

Query:     1 MAVVVGVXXXXXXXXXXXXXYAK--H--CKRGNSVVGYGTSHSALINPSSTNRKN--SGI 54
             +A++ GV             YAK  H   +      G    H  L      NR +  SG+
Sbjct:    41 LAIITGVFSIVFTLTFVLLVYAKCFHNDLRSETDSDGERIRHDRLWQ-GLFNRSSRFSGL 99

Query:    55 DRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH 114
             D+  IESLP FRF AL+G K GLEC+VCL++FE  E+LRLLPKC+HAFH+ C+D WL+ H
Sbjct:   100 DKKAIESLPFFRFSALKGLKQGLECSVCLSKFEDVEILRLLPKCRHAFHIGCIDQWLEQH 159

Query:   115 STCPLCRYRVDPEDIL 130
             +TCPLCR RV+ ED L
Sbjct:   160 ATCPLCRNRVNIEDDL 175

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2123558 AT4G28890 [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 64/136 (47%), Positives = 83/136 (61%)

Query:     1 MAVVVGVXXXXXXXXXXXXXYAKHCKRG-NSVVGYGTSHSALI------NPSSTNRKN-S 52
             +AVV GV             YAK C     S  G    H   +      N S+ +    S
Sbjct:    37 LAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASSDRFS 96

Query:    53 GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112
             G+D+T IESLP+FRF AL+G K GL+C+VCL++FE  E+LRLLPKC+HAFH+ C+D WL+
Sbjct:    97 GLDKTAIESLPLFRFSALKGSKQGLDCSVCLSKFESVEILRLLPKCRHAFHIGCIDQWLE 156

Query:   113 SHSTCPLCRYRVDPED 128
              H+TCPLCR RV  E+
Sbjct:   157 QHATCPLCRDRVSMEE 172

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

TAIR|locus:2118666 AT4G30400 [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 41/72 (56%), Positives = 57/72 (79%)

Query:    51 NSGIDRTVIESLPIFRFGALRGHKD-GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDT 109
             +SG+D++ I++LP+F + ++ G K+   +CAVCL  FE  + LRLLPKC HAFH++C+DT
Sbjct:   105 DSGVDQSFIDTLPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDT 164

Query:   110 WLDSHSTCPLCR 121
             WL SHSTCPLCR
Sbjct:   165 WLLSHSTCPLCR 176

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0080167 "response to karrikin" evidence=IEP

TAIR|locus:2140069 AT4G40070 [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 47/106 (44%), Positives = 65/106 (61%)

Query:    21 YAKHCKRGN--SVVGYGTSHSALINPSSTNRKNSGIDRTVIESLPIFRFGALRGHKDG-- 76
             Y +HC R N  S   Y  + +   N  S+ R   G+D  V+ES P+F + +++  K G  
Sbjct:    66 YIRHCARSNPDSSTRYFRNRA---NDGSSRR--GGLDNAVVESFPVFAYSSVKESKIGSK 120

Query:    77 -LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
              LECA+CL   E  E +RLLP C H FH++C+DTWL SH+TCP+CR
Sbjct:   121 DLECAICLNELEDHETVRLLPICNHLFHIDCIDTWLYSHATCPVCR 166

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2207026 AT1G72200 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 7.8e-21, P = 7.8e-21
 Identities = 52/130 (40%), Positives = 73/130 (56%)

Query:     1 MAVVVGVXXXXXXXXXXXXXYAKHCKRGNSVVGYGTSHSALINPSSTNRKNS-GIDRTVI 59
             MA+++ V             Y + C      + YG  + A  N  +TNR+ + G+D ++I
Sbjct:    63 MAILMIVLVSVFFFLGFFSVYIRRCLERVMGMDYGNPNDAG-NWLATNRQQARGLDASII 121

Query:    60 ESLPIFRFGA---LRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST 116
             E+ P F++     LR  K+ LEC+VCL  FE  E LRL+PKC H FH  C+D WL SH+T
Sbjct:   122 ETFPTFQYSTVKTLRIGKEALECSVCLNEFEDDETLRLIPKCCHVFHPGCIDAWLRSHTT 181

Query:   117 CPLCRYRVDP 126
             CPLCR  + P
Sbjct:   182 CPLCRADLIP 191

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006826 "iron ion transport" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2054049 MEE16 "maternal effect embryo arrest 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 43/75 (57%), Positives = 57/75 (76%)

Query:    48 NRKNSGIDRTVIESLPIFRFGALRGHK-DGLECAVCLTRFEPTEVLRLLPKCKHAFHVEC 106
             N  +SG+D+++I++LP+F + ++ G K    +C VCL  FE  + LRLLPKC HAFHVEC
Sbjct:    94 NLHDSGVDQSLIDTLPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVEC 153

Query:   107 VDTWLDSHSTCPLCR 121
             +DTWL SHSTCPLCR
Sbjct:   154 IDTWLLSHSTCPLCR 168

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

TAIR|locus:2089398 ATL2 "TOXICOS EN LEVADURA 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 42/73 (57%), Positives = 53/73 (72%)

Query:    53 GIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD 112
             G+D  VI+SLP+F F     HKD +ECAVCL+ FE +E  R+LP C+H FHV+C+D W  
Sbjct:    94 GLDPNVIKSLPVFTFSD-ETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFH 152

Query:   113 SHSTCPLCRYRVD 125
             SHSTCPLCR  V+
Sbjct:   153 SHSTCPLCRSLVE 165

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006952 "defense response" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2151421 AT5G17600 [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 47/127 (37%), Positives = 72/127 (56%)

Query:     1 MAVVVGVXXXXXXXXXXXXXYAKHCKRGNSVVGYGT---SHSALINPSSTNR---KNSGI 54
             +  ++G+              +K+C R +      T   +H+     SST R      G+
Sbjct:    58 LIALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFSSTQRISTNGDGL 117

Query:    55 DRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH 114
             + ++I+S+ ++++ +  G  DG +C+VCL+ FE  E LRLLPKC HAFH+ C+DTWL SH
Sbjct:   118 NESMIKSITVYKYKSGDGFVDGSDCSVCLSEFEENESLRLLPKCNHAFHLPCIDTWLKSH 177

Query:   115 STCPLCR 121
             S CPLCR
Sbjct:   178 SNCPLCR 184

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2199902 AT1G23980 [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 2.5e-19, P = 2.5e-19
 Identities = 38/71 (53%), Positives = 55/71 (77%)

Query:    51 NSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW 110
             +SG+D+ +I++LP+F +  ++G K+  +CAVCL  F   + LRLLP C HAFH++C+DTW
Sbjct:   116 DSGLDQALIDALPVFLYKEIKGTKEPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTW 175

Query:   111 LDSHSTCPLCR 121
             L S+STCPLCR
Sbjct:   176 LLSNSTCPLCR 186

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2096309 ATL6 "Arabidopsis toxicos en levadura 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 240 (89.5 bits), Expect = 4.1e-19, P = 4.1e-19
 Identities = 48/124 (38%), Positives = 67/124 (54%)

Query:     1 MAVVVGVXXXXXXXXXXXXXYAKHCKRGNSVVGYGTSHSALINPSSTNRKNSGIDRTVIE 60
             MAV+V +             Y +HC  G    G   +  A  + ++ N    G+D +V+E
Sbjct:    49 MAVIVVILIAALFFMGFFSIYFRHCS-GVPDAGVSPAGGAR-SRATVNAAARGLDVSVVE 106

Query:    61 SLPIFRFGALRGHKDG---LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
             + P F +  ++  K G   LECA+CL  FE  E LRLLPKC H FH  C+D WL++H TC
Sbjct:   107 TFPTFLYSDVKTQKLGKGELECAICLNEFEDDETLRLLPKCDHVFHPHCIDAWLEAHVTC 166

Query:   118 PLCR 121
             P+CR
Sbjct:   167 PVCR 170

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009814 "defense response, incompatible interaction" evidence=IEP

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5EAE9	ATL43_ARATH	No assigned EC number	0.5101	0.8031	0.7518	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	2e-16
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	9e-13
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	7e-10
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-09
smart00184	40	smart00184, RING, Ring finger	9e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	3e-08
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	3e-08
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	1e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	4e-05
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	2e-04
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	4e-04
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	0.003

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 72.4 bits (178), Expect = 2e-16
 Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 1/44 (2%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           EC +CL  FEP E + +LP C H FH EC+D WL S +TCPLCR
Sbjct: 2   ECPICLDEFEPGEEVVVLP-CGHVFHKECLDKWLRSSNTCPLCR 44

Length = 46

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 62.1 bits (151), Expect = 9e-13
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRV 124
           EC +CL  F       +L  C H F   C+D WL S  +TCPLCR  +
Sbjct: 1   ECPICLEEFREP---VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 59.6 bits (144), Expect = 7e-10
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 2/57 (3%)

Query: 71  RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDP 126
                G+ECA+C++ F   + LR+LP C H FHV CVD WL  +S  CP+CR  + P
Sbjct: 318 VEADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373

Length = 374

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 53.6 bits (129), Expect = 2e-09
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 9/52 (17%)

Query: 79  CAVCLTRFEPT---------EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           CA+C   F+ T         +   +  +C HAFH+ C+  WL + +TCPLCR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 50.6 bits (121), Expect = 9e-09
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 79  CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLC 120
           C +CL  +   +   +LP C H F   C+  WL+S + TCP+C
Sbjct: 1   CPICLEEYL--KDPVILP-CGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 49.4 bits (118), Expect = 3e-08
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 3/48 (6%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY 122
           + LEC +CL       VL     C H F  EC+  +L   S CP+CR 
Sbjct: 1   EELECPICLDLLRDPVVL---TPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 4/48 (8%)

Query: 78  ECAVCLTRFEPTEV----LRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           ECA+C+ +    E+      +L  C H F +EC+D W    +TCP+CR
Sbjct: 176 ECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCR 223

Length = 238

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 4/43 (9%)

Query: 79  CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLC 120
           C +CL   EP + + +LP C H F  +C+ +WL+S + TCPLC
Sbjct: 1   CPICLE--EPKDPVTILP-CGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 45.6 bits (108), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 62  LPIFRFGALRGHKDGLECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSHSTCPLC 120
           +PI      R H  G  C  C     P  E   +   C HAFH  C+  WLD+   CPL 
Sbjct: 18  IPIDVCAICRNHIMGT-CPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLD 76

Query: 121 R 121
           R
Sbjct: 77  R 77

Length = 88

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 3/31 (9%)

Query: 94  LLPKCKHAFHVECVDTWLDSHST---CPLCR 121
           +  KCKH FH+ C+  WL + ++   CP+CR
Sbjct: 48  VWGKCKHNFHMHCILKWLATETSKGLCPMCR 78

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 43.5 bits (102), Expect = 2e-04
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 15/80 (18%)

Query: 52   SGIDRTVIESLPIFRFGA---LRGHKDGLECAVCLTRFEPTEVLRLLPK-----CKHAFH 103
               + + ++ L +++        GH+   ECA+C +  +  +  R LP      CK+ FH
Sbjct: 1445 IKKNGSFMDLLGLWKKNIDEKFSGHE---ECAICYSVLDMVD--RSLPSKRCATCKNKFH 1499

Query: 104  VECVDTWLDS--HSTCPLCR 121
              C+  W  S   S CPLCR
Sbjct: 1500 TRCLYKWFASSARSNCPLCR 1519

Length = 1525

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 41.9 bits (98), Expect = 4e-04
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 9/52 (17%)

Query: 79  CAVCL-----TRFEPT-EVLRLLPK---CKHAFHVECVDTWLDSHSTCPLCR 121
           C +C+        EP    L + PK   C H  H+ C+  WL+   TCP+CR
Sbjct: 290 CTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICR 341

Length = 491

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 6/48 (12%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPKCKH-AFHVECVDTWLDSHSTCPLCR 121
           +   C +CL R  P  V+  LP C H     EC      S   CP+CR
Sbjct: 1   EDDLCVICLER--PRNVV-FLP-CGHLCLCEECAKRLR-SKKKCPICR 43

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.64
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.39
PHA02929	238	N1R/p28-like protein; Provisional	99.24
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.23
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	99.22
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.11
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.11
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.1
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.04
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.8
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.8
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.79
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.75
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.72
PHA02926	242	zinc finger-like protein; Provisional	98.69
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.66
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.63
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.61
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.56
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.56
PF14634	44	zf-RING_5: zinc-RING finger domain	98.55
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.47
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.43
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.32
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.29
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.24
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.22
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.19
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.12
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.08
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.06
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.04
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.03
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.99
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.94
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	97.93
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	97.89
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.8
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.79
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.71
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.68
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.66
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.66
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.63
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.58
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.49
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.36
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.36
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.34
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.25
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.13
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.81
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.7
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.62
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.47
PF04641	260	Rtf2: Rtf2 RING-finger	96.42
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.38
COG5152	259	Uncharacterized conserved protein, contains RING a	96.34
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.17
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.1
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.05
KOG2660	331	consensus Locus-specific chromosome binding protei	95.94
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.92
KOG1002	791	consensus Nucleotide excision repair protein RAD16	95.87
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.84
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.59
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.51
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	95.47
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.36
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	95.33
PHA02862	156	5L protein; Provisional	95.24
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.9
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.84
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.8
PHA03096	284	p28-like protein; Provisional	94.74
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.71
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.68
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.46
KOG4739	233	consensus Uncharacterized protein involved in syna	94.46
PHA02825	162	LAP/PHD finger-like protein; Provisional	94.36
PF02439	38	Adeno_E3_CR2: Adenovirus E3 region protein CR2; In	93.9
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.32
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	93.16
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.08
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	92.83
KOG1940	276	consensus Zn-finger protein [General function pred	92.4
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	92.37
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	92.06
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	91.85
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	91.64
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	91.16
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	90.91
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.83
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	90.05
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.44
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.75
KOG3053	293	consensus Uncharacterized conserved protein [Funct	88.49
KOG3002	299	consensus Zn finger protein [General function pred	86.67
PF12273	130	RCR: Chitin synthesis regulation, resistance to Co	86.06
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	86.01
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	85.69
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	85.28
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	84.77
KOG1609	323	consensus Protein involved in mRNA turnover and st	84.64
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	83.58
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	82.8
KOG0825	1134	consensus PHD Zn-finger protein [General function	81.86
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	81.2
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	81.0
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	80.8

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=5.6e-16  Score=154.08  Aligned_cols=77  Identities=31%  Similarity=0.819  Sum_probs=66.8

Q ss_pred             cCCCCCHHHHhhCCceeecccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846           50 KNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE  127 (381)
Q Consensus        50 ~~~gl~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  127 (381)
                      +...+.+..++.+|...|.........+.|+||||+|+.++++++|| |+|.||..||+.||.+.. .||+|+..+...
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLP-C~H~FH~~CIDpWL~~~r~~CPvCK~di~~~  280 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILP-CSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD  280 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEec-CCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence            44578889999999999988766555579999999999999999999 999999999999998874 599999976543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.39  E-value=1e-13  Score=98.77  Aligned_cols=43  Identities=47%  Similarity=1.209  Sum_probs=40.2

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR  121 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR  121 (381)
                      +|+||++.|..++.+..++ |+|.||.+||..|++.+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLP-CGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEET-TSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEcc-CCCeeCHHHHHHHHHhCCcCCccC
Confidence            7999999999999999998 999999999999999999999997

...

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.24  E-value=4.7e-12  Score=120.95  Aligned_cols=75  Identities=27%  Similarity=0.677  Sum_probs=58.0

Q ss_pred             CCCCCHHHHhhCCceeecc--cCCCCCCcccccccccccCCcc----eeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           51 NSGIDRTVIESLPIFRFGA--LRGHKDGLECAVCLTRFEPTEV----LRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        51 ~~gl~~~~i~~Lp~~~~~~--~~~~~~~~~C~ICle~~~~~~~----v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      ..+..+..++.+|.+....  +....++.+|+||++.+..+..    +.+++.|+|.||..||.+|+..+.+||+||.++
T Consensus       147 k~~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~  226 (238)
T PHA02929        147 KGKNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPF  226 (238)
T ss_pred             hcchhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEe
Confidence            4566889999999886443  2233456799999999876531    234445999999999999999999999999987


Q ss_pred             C
Q 016846          125 D  125 (381)
Q Consensus       125 ~  125 (381)
                      .
T Consensus       227 ~  227 (238)
T PHA02929        227 I  227 (238)
T ss_pred             e
Confidence            4

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1e-11  Score=123.41  Aligned_cols=71  Identities=28%  Similarity=0.720  Sum_probs=54.2

Q ss_pred             CCHHHHhhCCceeecccCCCCCCccccccccc-ccCC---------cceeecCCCCceeChhcHHHHhcCCCCCCccccc
Q 016846           54 IDRTVIESLPIFRFGALRGHKDGLECAVCLTR-FEPT---------EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYR  123 (381)
Q Consensus        54 l~~~~i~~Lp~~~~~~~~~~~~~~~C~ICle~-~~~~---------~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~  123 (381)
                      +.++.-+.+|.....++.  .++..|.||+|+ |+.+         .+.+.|| |||.||.+|++.|++++++||+||.+
T Consensus       267 ~~kdl~~~~~t~t~eql~--n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLp-CGHilHl~CLknW~ERqQTCPICr~p  343 (491)
T COG5243         267 ATKDLNAMYPTATEEQLT--NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLP-CGHILHLHCLKNWLERQQTCPICRRP  343 (491)
T ss_pred             HhhHHHhhcchhhhhhhc--CCCCeEEEecccccCCCCccCcccccCCccccc-ccceeeHHHHHHHHHhccCCCcccCc
Confidence            445666667776666653  344589999999 4444         2346788 99999999999999999999999999


Q ss_pred             cCCC
Q 016846          124 VDPE  127 (381)
Q Consensus       124 v~~~  127 (381)
                      +..+
T Consensus       344 ~ifd  347 (491)
T COG5243         344 VIFD  347 (491)
T ss_pred             cccc
Confidence            6433

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.22  E-value=8.1e-12  Score=117.64  Aligned_cols=63  Identities=21%  Similarity=0.602  Sum_probs=53.2

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCCCccccccccccCc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDPEDILLSFEKNIDS  139 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~~~~~~~~~~~~~~  139 (381)
                      ....++|.||||.-+++   +++. |||+|||.||.+||..   .+.||+|+..|..+.+++.|......
T Consensus        44 ~~~~FdCNICLd~akdP---VvTl-CGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~  109 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTL-CGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKK  109 (230)
T ss_pred             CCCceeeeeeccccCCC---EEee-cccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCC
Confidence            45678999999997666   4566 9999999999999976   45699999999999999998877643

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.11  E-value=5.1e-11  Score=94.27  Aligned_cols=45  Identities=40%  Similarity=0.983  Sum_probs=35.6

Q ss_pred             CcccccccccccCC----------cceeecCCCCceeChhcHHHHhcCCCCCCccc
Q 016846           76 GLECAVCLTRFEPT----------EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR  121 (381)
Q Consensus        76 ~~~C~ICle~~~~~----------~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR  121 (381)
                      ++.|+||++.|.++          ..+...+ |||.||..||.+||+.+.+||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGP-CGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEET-TSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecc-cCCCEEHHHHHHHHhcCCcCCCCC
Confidence            34699999999433          2344455 999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.11  E-value=2.8e-11  Score=117.72  Aligned_cols=53  Identities=47%  Similarity=1.148  Sum_probs=47.4

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDP  126 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~  126 (381)
                      .+.+.+|+|||+.|...+.++++| |.|.||..|+++|+. -+..||+||.++.+
T Consensus       320 a~~GveCaICms~fiK~d~~~vlP-C~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLP-CDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEec-cCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            344579999999999999999999 999999999999998 47789999998864

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.10  E-value=1.2e-10  Score=107.66  Aligned_cols=60  Identities=20%  Similarity=0.650  Sum_probs=49.3

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----------------CCCCCccccccCCCcccccccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----------------HSTCPLCRYRVDPEDILLSFEKNI  137 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----------------~~tCPlCR~~v~~~~~~~~~~~~~  137 (381)
                      .++.+|+||++.+.++   ++++ |||.||+.||..|+..                ...||+||..+...++.+.+....
T Consensus        16 ~~~~~CpICld~~~dP---VvT~-CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~   91 (193)
T PLN03208         16 GGDFDCNICLDQVRDP---VVTL-CGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQ   91 (193)
T ss_pred             CCccCCccCCCcCCCc---EEcC-CCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCC
Confidence            4567899999998766   4566 9999999999999852                347999999999888888776654

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=2.2e-10  Score=110.90  Aligned_cols=52  Identities=29%  Similarity=0.811  Sum_probs=45.4

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      ...|.+|||....+   ..+| |||+||+.||..|...+..||+||.++.+.++..
T Consensus       239 ~~kC~LCLe~~~~p---SaTp-CGHiFCWsCI~~w~~ek~eCPlCR~~~~pskvi~  290 (293)
T KOG0317|consen  239 TRKCSLCLENRSNP---SATP-CGHIFCWSCILEWCSEKAECPLCREKFQPSKVIC  290 (293)
T ss_pred             CCceEEEecCCCCC---CcCc-CcchHHHHHHHHHHccccCCCcccccCCCcceee
Confidence            45899999997666   4677 9999999999999999999999999998877643

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.80  E-value=3.3e-09  Score=77.55  Aligned_cols=46  Identities=35%  Similarity=0.892  Sum_probs=38.4

Q ss_pred             CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      +..|.||++....   +..+| |||. ||..|+..|+.....||+||+++.
T Consensus         2 ~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLP-CGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEET-TCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeC-CCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            4589999998543   56788 9999 999999999999999999999874

...

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.80  E-value=3.1e-09  Score=73.42  Aligned_cols=44  Identities=52%  Similarity=1.230  Sum_probs=36.3

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCcccccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRV  124 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v  124 (381)
                      +|+||++.+  .+.+...+ |+|.||..|+..|+.. ...||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~-C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLP-CGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecC-CCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998  33445555 9999999999999987 77899998754

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.79  E-value=3.5e-09  Score=73.62  Aligned_cols=39  Identities=33%  Similarity=1.077  Sum_probs=32.8

Q ss_pred             cccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlC  120 (381)
                      |+||++.+.+  .++.++ |||.||..|+.+|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~-CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTP-CGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECT-TSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECC-CCCchhHHHHHHHHHCcCCCcCC
Confidence            8999999866  445676 99999999999999998899998

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.7e-09  Score=97.16  Aligned_cols=55  Identities=24%  Similarity=0.641  Sum_probs=45.2

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      .-..|+|||+.+.....  +-.+|||+||..||+.-++....||+|++.+..+.+..
T Consensus       130 ~~~~CPiCl~~~sek~~--vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVP--VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             cccCCCceecchhhccc--cccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence            34689999999976643  32359999999999999999999999999888776543

>smart00504 Ubox Modified RING finger domain

Probab=98.72  E-value=1.1e-08  Score=77.27  Aligned_cols=51  Identities=24%  Similarity=0.533  Sum_probs=43.8

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      +.|+||++.+.++   ++++ |||+|+..||.+|+..+.+||+|+.++..+++..
T Consensus         2 ~~Cpi~~~~~~~P---v~~~-~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~~   52 (63)
T smart00504        2 FLCPISLEVMKDP---VILP-SGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLIP   52 (63)
T ss_pred             cCCcCCCCcCCCC---EECC-CCCEEeHHHHHHHHHHCCCCCCCcCCCChhhcee
Confidence            4799999999876   4567 9999999999999998889999999886665543

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PHA02926 zinc finger-like protein; Provisional

Probab=98.69  E-value=4.7e-09  Score=98.78  Aligned_cols=53  Identities=28%  Similarity=0.802  Sum_probs=39.8

Q ss_pred             CCCCcccccccccccCC-----cceeecCCCCceeChhcHHHHhcCC------CCCCccccccC
Q 016846           73 HKDGLECAVCLTRFEPT-----EVLRLLPKCKHAFHVECVDTWLDSH------STCPLCRYRVD  125 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~-----~~v~~lp~CgH~FH~~CI~~Wl~~~------~tCPlCR~~v~  125 (381)
                      ...+.+|+||||....+     ....+|+.|+|.||..||..|...+      ..||+||..+.
T Consensus       167 ~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        167 VSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             ccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34456899999986432     1234566699999999999998753      35999999774

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.66  E-value=1.1e-08  Score=83.21  Aligned_cols=51  Identities=29%  Similarity=0.780  Sum_probs=38.8

Q ss_pred             CcccccccccccCC--------c-ceeecCCCCceeChhcHHHHhcC---CCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPT--------E-VLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~--------~-~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~  126 (381)
                      ++.|.||...|+..        + -..++.+|+|.||..||.+||..   +..||+||+++..
T Consensus        21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   21 DDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             CCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            55799999988632        1 11233469999999999999986   5689999998754

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.63  E-value=7.7e-09  Score=109.52  Aligned_cols=52  Identities=31%  Similarity=0.788  Sum_probs=44.4

Q ss_pred             CCcccccccccccCCcc--eeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           75 DGLECAVCLTRFEPTEV--LRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~--v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      .+..|+||+|.+..+..  ...+| |+|.||..|+..|++++++||+||..+...
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~-C~Hifh~~CL~~W~er~qtCP~CR~~~~~~  343 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLP-CGHIFHDSCLRSWFERQQTCPTCRTVLYDY  343 (543)
T ss_pred             cCCeeeeechhhccccccccceee-cccchHHHHHHHHHHHhCcCCcchhhhhcc
Confidence            35689999999988654  56788 999999999999999999999999955443

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.61  E-value=2.1e-08  Score=71.32  Aligned_cols=38  Identities=34%  Similarity=0.922  Sum_probs=29.1

Q ss_pred             cccccccccCCcceeecCCCCceeChhcHHHHhcCC----CCCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH----STCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~----~tCPlC  120 (381)
                      |+||++.|.++   +.|+ |||.||..||..|++..    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~-CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLP-CGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-S-SSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccC-CcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999887   4566 99999999999998763    469988

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.56  E-value=3.4e-08  Score=68.80  Aligned_cols=39  Identities=46%  Similarity=1.216  Sum_probs=33.4

Q ss_pred             cccccccccCCcceeecCCCCceeChhcHHHHhc--CCCCCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD--SHSTCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~--~~~tCPlC  120 (381)
                      |+||++.+..+.  ..++ |||.||..|+.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~-C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLP-CGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETT-TSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEec-CCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999987663  4676 999999999999998  46679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.56  E-value=3.3e-08  Score=100.83  Aligned_cols=55  Identities=27%  Similarity=0.654  Sum_probs=45.4

Q ss_pred             CCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846           71 RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        71 ~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  129 (381)
                      ......+.|+||++.|..+   ++++ |||.||..||..|+.....||+|+..+....+
T Consensus        21 ~~Le~~l~C~IC~d~~~~P---vitp-CgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~L   75 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVP---VLTS-CSHTFCSLCIRRCLSNQPKCPLCRAEDQESKL   75 (397)
T ss_pred             cccccccCCCcCchhhhCc---cCCC-CCCchhHHHHHHHHhCCCCCCCCCCccccccC
Confidence            3345567999999999776   3566 99999999999999988899999998865543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.55  E-value=4e-08  Score=70.16  Aligned_cols=44  Identities=27%  Similarity=0.804  Sum_probs=37.8

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY  122 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~  122 (381)
                      .|+||++.|.......+++ |||.||..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~-CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTS-CGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcc-cCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            4999999996556677787 9999999999999866778999984

>smart00184 RING Ring finger

Probab=98.47  E-value=8.1e-08  Score=63.95  Aligned_cols=38  Identities=39%  Similarity=1.161  Sum_probs=31.9

Q ss_pred             cccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlC  120 (381)
                      |+||++..   .....++ |+|.||..|+..|+. .+..||+|
T Consensus         1 C~iC~~~~---~~~~~~~-C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEEL---KDPVVLP-CGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCC---CCcEEec-CCChHHHHHHHHHHHhCcCCCCCC
Confidence            88999983   3456777 999999999999998 56679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.43  E-value=7.3e-08  Score=92.66  Aligned_cols=51  Identities=33%  Similarity=0.830  Sum_probs=42.9

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHH-HhcCCCC-CCccccccCCCcc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDT-WLDSHST-CPLCRYRVDPEDI  129 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~-Wl~~~~t-CPlCR~~v~~~~~  129 (381)
                      .+..|+||++..+.+   ..++ |||+||+.||.. |-.++.. ||+||+.+.++++
T Consensus       214 ~d~kC~lC~e~~~~p---s~t~-CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~v  266 (271)
T COG5574         214 ADYKCFLCLEEPEVP---SCTP-CGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKKV  266 (271)
T ss_pred             cccceeeeecccCCc---cccc-ccchhhHHHHHHHHHhhccccCchhhhhccchhh
Confidence            456899999986655   5666 999999999999 9777665 9999999988775

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.32  E-value=4.2e-07  Score=93.62  Aligned_cols=50  Identities=34%  Similarity=0.945  Sum_probs=39.0

Q ss_pred             CcccccccccccCCc--------------ceeecCCCCceeChhcHHHHhcC-CCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPTE--------------VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~~--------------~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~  126 (381)
                      ..+|+|||.++..-.              ...++| |.|+||..|+.+|... +..||+||.++.+
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tP-C~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTP-CHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccc-hHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            457999999873321              123567 9999999999999994 6689999998754

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=3.4e-07  Score=94.87  Aligned_cols=58  Identities=24%  Similarity=0.602  Sum_probs=45.2

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccccCCCcccccccccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYRVDPEDILLSFEKNI  137 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~~~~~~~~~~~  137 (381)
                      +..|||||++...+   ..+. |||+||..||.++|..     ...||+|+..+.++++.+..-.+.
T Consensus       186 ~~~CPICL~~~~~p---~~t~-CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~  248 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTN-CGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD  248 (513)
T ss_pred             CCcCCcccCCCCcc---cccc-cCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence            56899999986554   3344 9999999999998764     347999999999988776654443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.24  E-value=5.5e-07  Score=71.07  Aligned_cols=54  Identities=20%  Similarity=0.504  Sum_probs=41.0

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~~  132 (381)
                      +.+.|+||.+.|.++   +++| |||.|...||..|+.. +.+||+|+.++...++.+.
T Consensus         3 ~~f~CpIt~~lM~dP---Vi~~-~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn   57 (73)
T PF04564_consen    3 DEFLCPITGELMRDP---VILP-SGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPN   57 (73)
T ss_dssp             GGGB-TTTSSB-SSE---EEET-TSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-
T ss_pred             cccCCcCcCcHhhCc---eeCC-cCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceEC
Confidence            456899999999887   4667 9999999999999999 8899999999987666543

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.22  E-value=2.7e-07  Score=91.46  Aligned_cols=58  Identities=29%  Similarity=0.721  Sum_probs=48.3

Q ss_pred             ccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           69 ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        69 ~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      .+...++-+.|.||.|.|..+   .++| |+|.||..||...|..+..||.|+.++....+.
T Consensus        16 slk~lD~lLRC~IC~eyf~ip---~itp-CsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr   73 (442)
T KOG0287|consen   16 SLKTLDDLLRCGICFEYFNIP---MITP-CSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLR   73 (442)
T ss_pred             hhhhhHHHHHHhHHHHHhcCc---eecc-ccchHHHHHHHHHhccCCCCCceecccchhhhh
Confidence            334445567899999999877   5677 999999999999999999999999988766544

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=3.7e-07  Score=88.08  Aligned_cols=55  Identities=31%  Similarity=0.706  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCCc-------ceeecCCCCceeChhcHHHHh--cCCCCCCccccccCCCcc
Q 016846           74 KDGLECAVCLTRFEPTE-------VLRLLPKCKHAFHVECVDTWL--DSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~-------~v~~lp~CgH~FH~~CI~~Wl--~~~~tCPlCR~~v~~~~~  129 (381)
                      .++..|+||-..+....       .+..|. |+|+||..||.-|.  ..+++||.|+..++.+.+
T Consensus       222 l~d~vCaVCg~~~~~s~~eegvienty~Ls-CnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rm  285 (328)
T KOG1734|consen  222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLS-CNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRM  285 (328)
T ss_pred             CCcchhHhhcchheeecchhhhhhhheeee-cccchHHHhhhhheeecCCCCCchHHHHhhHhhh
Confidence            34558999998876554       556776 99999999999995  458899999999976654

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.12  E-value=1.2e-06  Score=70.36  Aligned_cols=29  Identities=45%  Similarity=0.961  Sum_probs=27.2

Q ss_pred             CCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           97 KCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        97 ~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      .|.|.||..||.+||..+..||+||+++.
T Consensus        53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             ecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            59999999999999999999999999874

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.1e-06  Score=81.43  Aligned_cols=45  Identities=36%  Similarity=0.893  Sum_probs=39.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY  122 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~  122 (381)
                      .+...|+||++.|..+   .++| |+|.||..|+..++.....||.||.
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~-C~H~~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLP-CGHNFCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             cccccChhhHHHhhcC---cccc-ccchHhHHHHHHhcCCCcCCcccCC
Confidence            4566899999999988   6787 9999999999999885667999993

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.1e-06  Score=73.75  Aligned_cols=50  Identities=30%  Similarity=0.654  Sum_probs=37.7

Q ss_pred             CcccccccccccC-------------CcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           76 GLECAVCLTRFEP-------------TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~-------------~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      -+.|+||...+-+             .+-++.--.|.|.||..||.+||+.+..||+|.++..
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~  108 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV  108 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence            3479999876511             1222333359999999999999999999999988764

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.04  E-value=3.1e-06  Score=83.82  Aligned_cols=54  Identities=22%  Similarity=0.516  Sum_probs=39.7

Q ss_pred             Cccccccccc-ccCCc-ceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846           76 GLECAVCLTR-FEPTE-VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        76 ~~~C~ICle~-~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~  130 (381)
                      +..||||... |-.++ .+.+.+ |||.||..|++..+.. ...||.|+..+....+.
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~-CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr   59 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFR   59 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCC-CCCcccHHHHHHHhcCCCCCCCCCCCccchhhcc
Confidence            3579999995 33343 333335 9999999999996644 56899999988776644

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.03  E-value=1.8e-06  Score=84.15  Aligned_cols=54  Identities=28%  Similarity=0.608  Sum_probs=44.2

Q ss_pred             ccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           69 ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        69 ~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      .+.+.+..+.|-||-+.|..+   ..++ |||.||..||...|..+..||+||.+...
T Consensus        18 SL~~LDs~lrC~IC~~~i~ip---~~Tt-CgHtFCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          18 SLKGLDSMLRCRICDCRISIP---CETT-CGHTFCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             chhcchhHHHhhhhhheeecc---eecc-cccchhHHHHHHHhcCCCCCccccccHHh
Confidence            334445556899999999877   3455 99999999999999999999999987644

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.03  E-value=6.9e-07  Score=97.58  Aligned_cols=53  Identities=32%  Similarity=0.816  Sum_probs=39.8

Q ss_pred             CCCCcccccccccccCCc---ceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846           73 HKDGLECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD  125 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~  125 (381)
                      ..+-.+|+||+..+..-+   .-..+++|.|.||..|+.+|+..  +.+||+||.++.
T Consensus      1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            344568999998775211   12345579999999999999986  678999998763

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.99  E-value=4e-06  Score=60.11  Aligned_cols=38  Identities=29%  Similarity=0.802  Sum_probs=22.2

Q ss_pred             cccccccccCC-cceeecCCCCceeChhcHHHHhcCC----CCCC
Q 016846           79 CAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSH----STCP  118 (381)
Q Consensus        79 C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~~----~tCP  118 (381)
                      |+||.| |... ...++|+ |||.|+.+||.+++...    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~-CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLP-CGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-S-SS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEe-CccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 7553 3457788 99999999999998743    3576

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.94  E-value=1.9e-06  Score=67.80  Aligned_cols=50  Identities=30%  Similarity=0.746  Sum_probs=23.4

Q ss_pred             Cccccccccccc-CCc-ceeecC--CCCceeChhcHHHHhcC----C-------CCCCccccccC
Q 016846           76 GLECAVCLTRFE-PTE-VLRLLP--KCKHAFHVECVDTWLDS----H-------STCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~-~~~-~v~~lp--~CgH~FH~~CI~~Wl~~----~-------~tCPlCR~~v~  125 (381)
                      +.+|.||++.+. .++ ...+.+  +|++.||..||.+||..    +       ..||.|+.++.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            358999999865 322 223332  69999999999999863    1       25999998873

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=2e-06  Score=68.50  Aligned_cols=50  Identities=30%  Similarity=0.772  Sum_probs=36.6

Q ss_pred             CcccccccccccCCcc---------eeecCCCCceeChhcHHHHhcC---CCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTEV---------LRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~---------v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~  125 (381)
                      +..|-||.-.|...-.         ..++-.|.|.||..||.+|+..   +..||+||+.+.
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3478899888854211         1123359999999999999975   457999998764

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=97.89  E-value=6.1e-06  Score=60.62  Aligned_cols=42  Identities=26%  Similarity=0.811  Sum_probs=32.3

Q ss_pred             ccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCR  121 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR  121 (381)
                      .|.||++.. .++...+.| |.     |.||..|+.+|+..  +.+||+|+
T Consensus         1 ~CrIC~~~~-~~~~~l~~P-C~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEG-DEGDPLVSP-CRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCC-CCCCeeEec-cccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            389999933 344445778 85     88999999999965  45899994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=1e-05  Score=80.96  Aligned_cols=49  Identities=29%  Similarity=0.779  Sum_probs=40.5

Q ss_pred             CCCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      +.+.+|.|||.+.   ..+.+|| |.|. .|..|.+..--++..||+||+++..
T Consensus       288 ~~gkeCVIClse~---rdt~vLP-CRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  288 ESGKECVICLSES---RDTVVLP-CRHLCLCSGCAKSLRYQTNNCPICRQPIEE  337 (349)
T ss_pred             cCCCeeEEEecCC---cceEEec-chhhehhHhHHHHHHHhhcCCCccccchHh
Confidence            3466899999984   4457899 9999 9999999977678889999999853

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.79  E-value=3.5e-05  Score=73.05  Aligned_cols=56  Identities=25%  Similarity=0.592  Sum_probs=46.6

Q ss_pred             CCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCccccccCCCc
Q 016846           71 RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCRYRVDPED  128 (381)
Q Consensus        71 ~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR~~v~~~~  128 (381)
                      .+++....|..|--.+..++.+++.  |.|+||++|+.+|-.+        ...||.|..++++..
T Consensus        45 ~DsDY~pNC~LC~t~La~gdt~RLv--CyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~  108 (299)
T KOG3970|consen   45 QDSDYNPNCRLCNTPLASGDTTRLV--CYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPI  108 (299)
T ss_pred             hhcCCCCCCceeCCccccCcceeeh--hhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCc
Confidence            3455666899999999999998765  9999999999999643        457999999998754

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=3.5e-06  Score=84.08  Aligned_cols=51  Identities=27%  Similarity=0.642  Sum_probs=41.3

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPE  127 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~  127 (381)
                      ..++.|+|||+.++..   +.++.|.|.||..||..-+.. +..||.||+.+..+
T Consensus        41 ~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   41 DIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             hhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            4456899999998765   344579999999999988866 78999999987543

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.68  E-value=9.5e-06  Score=87.62  Aligned_cols=54  Identities=33%  Similarity=0.759  Sum_probs=42.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~~  132 (381)
                      +-..|++|-..+++.    ++++|+|+||..|+..-+.. +..||.|...+.+.++.+.
T Consensus       642 ~~LkCs~Cn~R~Kd~----vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I  696 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA----VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHRI  696 (698)
T ss_pred             hceeCCCccCchhhH----HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCccccccc
Confidence            345899999776543    44469999999999998876 6689999999988876543

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.66  E-value=1.8e-05  Score=61.36  Aligned_cols=51  Identities=27%  Similarity=0.706  Sum_probs=24.9

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      ..|++|.+.+..+.   .+..|.|+||..||..-+..  .||+|+.+.-..++...
T Consensus         8 LrCs~C~~~l~~pv---~l~~CeH~fCs~Ci~~~~~~--~CPvC~~Paw~qD~~~N   58 (65)
T PF14835_consen    8 LRCSICFDILKEPV---CLGGCEHIFCSSCIRDCIGS--ECPVCHTPAWIQDIQIN   58 (65)
T ss_dssp             TS-SSS-S--SS-B------SSS--B-TTTGGGGTTT--B-SSS--B-S-SS----
T ss_pred             cCCcHHHHHhcCCc---eeccCccHHHHHHhHHhcCC--CCCCcCChHHHHHHHhh
Confidence            47999999998772   33469999999999886553  49999998877766543

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.66  E-value=1.7e-05  Score=81.25  Aligned_cols=48  Identities=35%  Similarity=0.944  Sum_probs=38.4

Q ss_pred             CCcccccccccccCCc-ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      +-.+||||||.+.... .++... |.|.||..|+..|.  ..+||+||....
T Consensus       174 ELPTCpVCLERMD~s~~gi~t~~-c~Hsfh~~cl~~w~--~~scpvcR~~q~  222 (493)
T KOG0804|consen  174 ELPTCPVCLERMDSSTTGILTIL-CNHSFHCSCLMKWW--DSSCPVCRYCQS  222 (493)
T ss_pred             cCCCcchhHhhcCccccceeeee-cccccchHHHhhcc--cCcChhhhhhcC
Confidence            4568999999997664 344555 99999999999994  468999998664

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1.8e-05  Score=79.85  Aligned_cols=47  Identities=28%  Similarity=0.895  Sum_probs=35.2

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCcccccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRV  124 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v  124 (381)
                      .|.||.+-+-....+.-+..|||+||..|+.+|+..   +..||+|+-.+
T Consensus         6 ~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    6 ECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             eeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            799995544444444444469999999999999987   34799998444

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.58  E-value=1.2e-05  Score=60.39  Aligned_cols=45  Identities=27%  Similarity=0.620  Sum_probs=35.0

Q ss_pred             cccccccccccCCcceeecCCCCce-eChhcHHHHhc-CCCCCCccccccC
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLD-SHSTCPLCRYRVD  125 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~-~~~tCPlCR~~v~  125 (381)
                      .+|.||+|.-.+.    ++-.|||. .|+.|-.+.++ .+..||+||+++.
T Consensus         8 dECTICye~pvds----VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS----VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH----HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            5899999885444    23349998 89999877655 5889999999873

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.49  E-value=2.1e-05  Score=85.02  Aligned_cols=53  Identities=26%  Similarity=0.468  Sum_probs=42.8

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      ..|++|+..+.+.......+ |+|.||..||..|-..-.+||+||..+..-.+.
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~-c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKH-TAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccc-cccccHHHHhhhhhhhcccCchhhhhhheeeee
Confidence            36888888887665555555 999999999999999999999999988654443

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=5e-05  Score=74.59  Aligned_cols=48  Identities=27%  Similarity=0.588  Sum_probs=38.3

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPED  128 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  128 (381)
                      .+|+||+....-+   ..++ |+|.||+.||+--... ..+|++||.+++..-
T Consensus         8 ~eC~IC~nt~n~P---v~l~-C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    8 KECLICYNTGNCP---VNLY-CFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             CcceeeeccCCcC---cccc-ccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            4799999886544   4666 9999999999876655 567999999997553

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.36  E-value=4.8e-05  Score=74.72  Aligned_cols=53  Identities=28%  Similarity=0.783  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----------------------CCCCCCccccccCCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----------------------SHSTCPLCRYRVDPE  127 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----------------------~~~tCPlCR~~v~~~  127 (381)
                      .....|+|||.-|..++...+++ |.|.||..|+..+|.                       .+..||+||..+..+
T Consensus       113 ~p~gqCvICLygfa~~~~ft~T~-C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e  188 (368)
T KOG4445|consen  113 HPNGQCVICLYGFASSPAFTVTA-CDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE  188 (368)
T ss_pred             CCCCceEEEEEeecCCCceeeeh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence            34568999999999999888888 999999999988763                       123699999988543

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.36  E-value=8.2e-05  Score=74.99  Aligned_cols=51  Identities=27%  Similarity=0.892  Sum_probs=39.1

Q ss_pred             CCcccccccccccCCc----ceeecCCCCceeChhcHHHHh--cC-----CCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWL--DS-----HSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl--~~-----~~tCPlCR~~v~  125 (381)
                      .+..|.||++......    ...++|+|.|.||..||..|-  .+     ...||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            3568999999875543    123567799999999999997  33     467999998653

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.34  E-value=4.6e-05  Score=77.46  Aligned_cols=52  Identities=27%  Similarity=0.770  Sum_probs=39.6

Q ss_pred             CCcccccccccccCC-cceeecCCCCceeChhcHHHHhcC--CCCCCccccccCC
Q 016846           75 DGLECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~  126 (381)
                      .+..|+||++.++.+ +...+.+.|||.|-..||+.||.+  ...||.|..+-..
T Consensus         3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katk   57 (463)
T KOG1645|consen    3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATK   57 (463)
T ss_pred             ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHH
Confidence            356899999998665 344455569999999999999964  3469999765433

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.25  E-value=0.00017  Score=73.30  Aligned_cols=47  Identities=30%  Similarity=0.883  Sum_probs=38.8

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccCCCc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDPED  128 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~  128 (381)
                      -|-||-|.   ...+++-| |||..|..|+..|-..  .++||.||.++.-.+
T Consensus       371 LCKICaen---dKdvkIEP-CGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  371 LCKICAEN---DKDVKIEP-CGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHhhcc---CCCccccc-ccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            59999876   45567778 9999999999999754  679999999986544

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.13  E-value=0.00022  Score=73.19  Aligned_cols=49  Identities=39%  Similarity=0.912  Sum_probs=42.4

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ..+++|.||+..+..+   +.+| |||.||..||++-+.....||.||.++..
T Consensus        82 ~sef~c~vc~~~l~~p---v~tp-cghs~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTP-CGHSFCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCC---cccc-ccccccHHHHHHHhccCCCCccccccccc
Confidence            4568999999998777   4567 99999999999988888899999998864

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.81  E-value=0.00064  Score=69.75  Aligned_cols=54  Identities=26%  Similarity=0.674  Sum_probs=44.5

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      +++..|++|...+.++-..  + .|||.||..|+..|+..+..||.|+..+.....+
T Consensus        19 ~~~l~C~~C~~vl~~p~~~--~-~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~   72 (391)
T KOG0297|consen   19 DENLLCPICMSVLRDPVQT--T-TCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL   72 (391)
T ss_pred             cccccCccccccccCCCCC--C-CCCCcccccccchhhccCcCCcccccccchhhcc
Confidence            4567899999999887332  2 4999999999999999999999999888655543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.70  E-value=0.00082  Score=50.96  Aligned_cols=42  Identities=29%  Similarity=0.690  Sum_probs=27.6

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPL  119 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPl  119 (381)
                      -...|||.+..|++|  ++-. +|+|.|-...|.+||..  ...||+
T Consensus        10 ~~~~CPiT~~~~~~P--V~s~-~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDP--VKSK-KCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSE--EEES-SS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCC--cCcC-CCCCeecHHHHHHHHHhcCCCCCCC
Confidence            446899999999876  4444 49999999999999944  446998

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.62  E-value=0.0019  Score=62.26  Aligned_cols=60  Identities=18%  Similarity=0.246  Sum_probs=52.7

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccccccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK  135 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~~~~  135 (381)
                      .+.|+||.+.+.+...+.+|.+|||+|+.+|+.+.+..-..||+|-.++...+++.....
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI~LqrG  280 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDIIGLQRG  280 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceEeeecc
Confidence            457999999999988887887899999999999999999999999999998887765443

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.47  E-value=0.002  Score=62.82  Aligned_cols=49  Identities=31%  Similarity=0.517  Sum_probs=37.5

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~  125 (381)
                      ..+.+|++|-+.-..|-.  ..+ |+|+||+.|+..-+..  ..+||.|-.++.
T Consensus       237 t~~~~C~~Cg~~PtiP~~--~~~-C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHV--IGK-CGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCee--ecc-ccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            345689999998666633  344 9999999999986553  578999987764

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.42  E-value=0.0033  Score=61.03  Aligned_cols=63  Identities=19%  Similarity=0.377  Sum_probs=48.9

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccccccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKN  136 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~~~~~  136 (381)
                      ....+.|||+..+|......+.+..|||+|...||.+- .....||+|-.++...+++......
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~DiI~Lnp~~  172 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEEDIIPLNPPE  172 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCCEEEecCCc
Confidence            34567899999999666555566559999999999996 3356799999999988877654443

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.38  E-value=0.0013  Score=59.66  Aligned_cols=41  Identities=27%  Similarity=0.580  Sum_probs=31.7

Q ss_pred             CceeecccCCCCCCcccccccccccCCcceeecCCCCceeCh
Q 016846           63 PIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHV  104 (381)
Q Consensus        63 p~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~  104 (381)
                      |.+.|.+.--.++..+|.||||+++.++++..|| |-.+||+
T Consensus       164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLP-CLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLP-CLCIYHK  204 (205)
T ss_pred             cccccccchhcccCCcEEEEhhhccCCCceeccc-eEEEeec
Confidence            3334444333455679999999999999999999 9999996

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.34  E-value=0.0014  Score=61.32  Aligned_cols=48  Identities=21%  Similarity=0.512  Sum_probs=39.6

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      .+-.+.|.||-++|+.+   +++ .|||.||..|...-++....|-+|-+..
T Consensus       193 e~IPF~C~iCKkdy~sp---vvt-~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         193 EKIPFLCGICKKDYESP---VVT-ECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             CCCceeehhchhhccch---hhh-hcchhHHHHHHHHHhccCCcceecchhh
Confidence            33446899999999887   344 4999999999999888899999997654

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.17  E-value=0.0013  Score=66.88  Aligned_cols=46  Identities=37%  Similarity=0.881  Sum_probs=37.7

Q ss_pred             CcccccccccccC-CcceeecCCCCceeChhcHHHHhcCC--CCCCcccc
Q 016846           76 GLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRY  122 (381)
Q Consensus        76 ~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~  122 (381)
                      +.-|..|-+.+-. ++.+..|| |.|+||..|+...|.++  .+||.||+
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALp-CsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALP-CSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccc-hhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            3569999998744 34677888 99999999999999774  57999984

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.0048  Score=61.57  Aligned_cols=52  Identities=23%  Similarity=0.524  Sum_probs=40.5

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  129 (381)
                      +...|+||+....++..+.   .-|.+||+.|+.+.+..+..||+--.+..-.++
T Consensus       299 ~~~~CpvClk~r~Nptvl~---vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~v~~l  350 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNPTVLE---VSGYVFCYPCIFSYVVNYGHCPVTGYPASVDHL  350 (357)
T ss_pred             ccccChhHHhccCCCceEE---ecceEEeHHHHHHHHHhcCCCCccCCcchHHHH
Confidence            4458999999987774332   259999999999999999999998766654443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.05  E-value=0.0031  Score=72.26  Aligned_cols=67  Identities=22%  Similarity=0.580  Sum_probs=47.0

Q ss_pred             HhhCCceeecc-cCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC----------CCCCccccccCC
Q 016846           59 IESLPIFRFGA-LRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH----------STCPLCRYRVDP  126 (381)
Q Consensus        59 i~~Lp~~~~~~-~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~----------~tCPlCR~~v~~  126 (381)
                      -..||-+.-+. ...++.++.|.||+.+--.....+.|- |+|.||..|...-|++.          -.||+|+.++..
T Consensus      3468 E~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~-C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3468 EHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLD-CSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             hhcccccccChhhhhcccCceEEEEehhhhCCCcceecC-CccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            34455444322 234566778999998766666677786 99999999998765542          269999998854

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.94  E-value=0.0017  Score=64.70  Aligned_cols=50  Identities=20%  Similarity=0.604  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      .-..|.+|-..|.+...+.   .|-|.||..||...|.....||.|...+-..
T Consensus        14 ~~itC~LC~GYliDATTI~---eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLIDATTIT---ECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceeecchhHH---HHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            4458999999998775543   4999999999999999999999998777444

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.92  E-value=0.0023  Score=56.48  Aligned_cols=35  Identities=20%  Similarity=0.632  Sum_probs=29.8

Q ss_pred             CcccccccccccCCcceeecCCCC------ceeChhcHHHHh
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCK------HAFHVECVDTWL  111 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~Cg------H~FH~~CI~~Wl  111 (381)
                      ..+|.||++.+...+.++.++ |+      |.||..|+.+|-
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt-~~g~lnLEkmfc~~C~~rw~   66 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVT-DGGTLNLEKMFCADCDKRWR   66 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEe-cCCeehHHHHHHHHHHHHHH
Confidence            458999999998866777777 86      889999999994

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=95.87  E-value=0.0027  Score=66.77  Aligned_cols=51  Identities=27%  Similarity=0.681  Sum_probs=38.8

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccccCCC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYRVDPE  127 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~v~~~  127 (381)
                      ..+..+|.+|.++-++.   .... |.|.||..|+.+++..     +.+||.|-..+..+
T Consensus       533 nk~~~~C~lc~d~aed~---i~s~-ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  533 NKGEVECGLCHDPAEDY---IESS-CHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             ccCceeecccCChhhhh---Hhhh-hhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            34556899999986554   4454 9999999999988753     56899998777443

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.84  E-value=0.0061  Score=61.45  Aligned_cols=49  Identities=20%  Similarity=0.474  Sum_probs=41.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      .++..|+||+..   +-..+..| |+|.-|+.||.+-+...+.|=.|+..+..
T Consensus       420 sEd~lCpICyA~---pi~Avf~P-C~H~SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAG---PINAVFAP-CSHRSCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecc---cchhhccC-CCCchHHHHHHHHHhcCCeeeEecceeee
Confidence            456689999876   43446778 99999999999999999999999998864

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.59  E-value=0.0089  Score=43.97  Aligned_cols=45  Identities=22%  Similarity=0.509  Sum_probs=22.8

Q ss_pred             cccccccccCCc-ceeecCCCCceeChhcHHHHhc-CCCCCCcccccc
Q 016846           79 CAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRV  124 (381)
Q Consensus        79 C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v  124 (381)
                      |++|.+++...+ ...-.+ |++.+|..|...-+. ....||-||.++
T Consensus         1 cp~C~e~~d~~d~~~~PC~-Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCE-CGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SST-TS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCc-CCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999994443 333344 899999999988876 478899999875

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.51  E-value=0.0069  Score=49.82  Aligned_cols=31  Identities=29%  Similarity=0.817  Sum_probs=25.5

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHH
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVD  108 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~  108 (381)
                      +..|++|-..+..+ ...+.| |||+||..|+.
T Consensus        78 ~~~C~vC~k~l~~~-~f~~~p-~~~v~H~~C~~  108 (109)
T PF10367_consen   78 STKCSVCGKPLGNS-VFVVFP-CGHVVHYSCIK  108 (109)
T ss_pred             CCCccCcCCcCCCc-eEEEeC-CCeEEeccccc
Confidence            44799999999774 555777 99999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=95.47  E-value=0.0091  Score=43.45  Aligned_cols=40  Identities=33%  Similarity=0.980  Sum_probs=27.3

Q ss_pred             cccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlC  120 (381)
                      |-||++.-.....+ +.| |.     ...|..||.+|+..  +..|++|
T Consensus         1 CrIC~~~~~~~~~l-i~p-C~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDEPL-ISP-CRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS-E-E-S-SS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCCce-ecc-cccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            77999987766533 456 65     36899999999974  5679987

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.36  E-value=0.0064  Score=59.94  Aligned_cols=44  Identities=23%  Similarity=0.518  Sum_probs=37.9

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      +.|-||...|..+   +++ +|+|.||..|...-++....|++|-+..
T Consensus       242 f~c~icr~~f~~p---Vvt-~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVT-KCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccc---hhh-cCCceeehhhhccccccCCcceeccccc
Confidence            4699999999887   344 4999999999999888889999997765

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=95.33  E-value=0.0075  Score=66.43  Aligned_cols=50  Identities=30%  Similarity=0.755  Sum_probs=40.3

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-------CCCCCccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-------HSTCPLCRYR  123 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-------~~tCPlCR~~  123 (381)
                      ....+|.||++.+.....+-....|.|+||..||..|-..       ...||.|...
T Consensus       189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv  245 (950)
T KOG1952|consen  189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV  245 (950)
T ss_pred             cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence            4457999999999888777666679999999999999754       2369999743

>PHA02862 5L protein; Provisional

Probab=95.24  E-value=0.0081  Score=53.70  Aligned_cols=47  Identities=19%  Similarity=0.597  Sum_probs=35.7

Q ss_pred             cccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccccccCCCc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCRYRVDPED  128 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~  128 (381)
                      ..|=||+++-++.    .-| |.     ...|..|+.+|+..  +..||+|+.++..+.
T Consensus         3 diCWIC~~~~~e~----~~P-C~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~   56 (156)
T PHA02862          3 DICWICNDVCDER----NNF-CGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK   56 (156)
T ss_pred             CEEEEecCcCCCC----ccc-ccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence            4799999985433    244 65     46999999999965  567999999986544

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.90  E-value=0.017  Score=58.31  Aligned_cols=43  Identities=30%  Similarity=0.685  Sum_probs=31.1

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ...|.||+++.++   ...+| |||.-|  |..-- +....||+||..+.
T Consensus       305 p~lcVVcl~e~~~---~~fvp-cGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEPKS---AVFVP-CGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCccc---eeeec-CCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            4479999998655   46788 999966  65442 23445999998774

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.84  E-value=0.0073  Score=59.53  Aligned_cols=42  Identities=26%  Similarity=0.642  Sum_probs=32.1

Q ss_pred             CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ..-|+||++.   +.....|+ |||. -|.+|-...    ..||+||+.+.
T Consensus       300 ~~LC~ICmDa---P~DCvfLe-CGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDA---PRDCVFLE-CGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcC---CcceEEee-cCcEEeehhhcccc----ccCchHHHHHH
Confidence            4569999987   55567888 9998 677886553    37999998763

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.80  E-value=0.011  Score=60.70  Aligned_cols=47  Identities=21%  Similarity=0.660  Sum_probs=37.5

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCcccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCRY  122 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR~  122 (381)
                      ....|.||+++.........+| |+|+||..|+..++..        ...||-|.-
T Consensus       183 slf~C~ICf~e~~G~~c~~~lp-C~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLP-CSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecc-cchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            3458999999987767888999 9999999999998753        235876643

>PHA03096 p28-like protein; Provisional

Probab=94.74  E-value=0.012  Score=58.27  Aligned_cols=46  Identities=26%  Similarity=0.621  Sum_probs=32.9

Q ss_pred             cccccccccccCCc----ceeecCCCCceeChhcHHHHhcC---CCCCCcccc
Q 016846           77 LECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRY  122 (381)
Q Consensus        77 ~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~  122 (381)
                      -.|.||++......    .-..|+.|.|.||..|+..|-..   ..+||.|+.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence            47999999875432    23467789999999999999754   334544443

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.71  E-value=0.015  Score=57.65  Aligned_cols=50  Identities=34%  Similarity=0.672  Sum_probs=37.2

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHh-cCCCCCCcccc-ccCCCcc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRY-RVDPEDI  129 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-~~~~tCPlCR~-~v~~~~~  129 (381)
                      +.|+.|..-+..+.+   +|-|+|.||.+||..-| .....||.|.. .+..+.+
T Consensus       275 LkCplc~~Llrnp~k---T~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l  326 (427)
T COG5222         275 LKCPLCHCLLRNPMK---TPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGL  326 (427)
T ss_pred             ccCcchhhhhhCccc---CccccchHHHHHHhhhhhhccccCCCcccccchhhcc
Confidence            689999988877743   35599999999998665 55788999954 4433333

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.68  E-value=0.016  Score=58.29  Aligned_cols=56  Identities=21%  Similarity=0.504  Sum_probs=39.7

Q ss_pred             CCCcccccccccccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~  130 (381)
                      ++++-|+.|+|++...++- .-+| ||...|..|...--+. +..||-||..++.+.+.
T Consensus        12 deed~cplcie~mditdknf~pc~-cgy~ic~fc~~~irq~lngrcpacrr~y~denv~   69 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCP-CGYQICQFCYNNIRQNLNGRCPACRRKYDDENVR   69 (480)
T ss_pred             cccccCcccccccccccCCcccCC-cccHHHHHHHHHHHhhccCCChHhhhhcccccee
Confidence            3344599999999777653 3455 8988787776553322 67899999988777653

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.46  E-value=0.034  Score=56.12  Aligned_cols=64  Identities=20%  Similarity=0.505  Sum_probs=43.7

Q ss_pred             HHhhCCceeecccCC-CCCCcccccccccccCCcceeecCCCCceeChhcHHHH--hcCCCCCCccccccC
Q 016846           58 VIESLPIFRFGALRG-HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW--LDSHSTCPLCRYRVD  125 (381)
Q Consensus        58 ~i~~Lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W--l~~~~tCPlCR~~v~  125 (381)
                      .+..-|.+.-...++ +.+...|.||-+.+.   ...++| |+|..|.-|-...  |..++.||+||....
T Consensus        42 nlsaEPnlttsSaddtDEen~~C~ICA~~~T---Ys~~~P-C~H~~CH~Ca~RlRALY~~K~C~~CrTE~e  108 (493)
T COG5236          42 NLSAEPNLTTSSADDTDEENMNCQICAGSTT---YSARYP-CGHQICHACAVRLRALYMQKGCPLCRTETE  108 (493)
T ss_pred             ccccCCccccccccccccccceeEEecCCce---EEEecc-CCchHHHHHHHHHHHHHhccCCCccccccc
Confidence            334445444444333 334567999988753   346788 9999999998653  566889999998763

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.46  E-value=0.013  Score=56.30  Aligned_cols=48  Identities=23%  Similarity=0.607  Sum_probs=34.9

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  129 (381)
                      .|..|.---. ++...++. |+|+||..|...-.  ...||+|++++....+
T Consensus         5 hCn~C~~~~~-~~~f~LTa-C~HvfC~~C~k~~~--~~~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    5 HCNKCFRFPS-QDPFFLTA-CRHVFCEPCLKASS--PDVCPLCKKSIRIIQL   52 (233)
T ss_pred             EeccccccCC-CCceeeee-chhhhhhhhcccCC--ccccccccceeeeeec
Confidence            5887866544 66777776 99999999976532  3389999998754443

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=94.36  E-value=0.025  Score=51.33  Aligned_cols=49  Identities=20%  Similarity=0.634  Sum_probs=35.5

Q ss_pred             CCCcccccccccccCCcceeecCCCC--c---eeChhcHHHHhcC--CCCCCccccccCCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCK--H---AFHVECVDTWLDS--HSTCPLCRYRVDPE  127 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~Cg--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~~~  127 (381)
                      ..+..|-||.++...  .  .-| |.  .   ..|.+|+..|+..  ...|++|+.++...
T Consensus         6 ~~~~~CRIC~~~~~~--~--~~P-C~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          6 LMDKCCWICKDEYDV--V--TNY-CNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCCeeEecCCCCCC--c--cCC-cccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            445689999988532  2  234 54  3   5799999999976  45799999888543

>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []

Probab=93.90  E-value=0.066  Score=37.47  Aligned_cols=29  Identities=24%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CeehhhHHHHHHHHHHHHHHHHHhhcCCC
Q 016846            1 MAVVVGVLTTMFSMTFLLLLYAKHCKRGN   29 (381)
Q Consensus         1 IaiII~Vl~iif~l~~llliyik~c~rr~   29 (381)
                      |++|.+|++++.++++.+++|++++++.+
T Consensus         6 IaIIv~V~vg~~iiii~~~~YaCcykk~~   34 (38)
T PF02439_consen    6 IAIIVAVVVGMAIIIICMFYYACCYKKHR   34 (38)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            57888999999999999888888777644

This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.32  E-value=0.049  Score=53.29  Aligned_cols=47  Identities=30%  Similarity=0.789  Sum_probs=37.7

Q ss_pred             cccccccccccCCc---ceeecCCCCceeChhcHHHHhcC-CCCCCcccccc
Q 016846           77 LECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRV  124 (381)
Q Consensus        77 ~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v  124 (381)
                      ..|-||-++|...+   ..+.| +|||.||..|+...+.. ...||.||.+.
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l-~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVL-KCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCccc-ccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            47999999997763   23455 49999999999988766 44699999985

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=93.16  E-value=0.058  Score=40.74  Aligned_cols=45  Identities=24%  Similarity=0.527  Sum_probs=32.9

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED  128 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  128 (381)
                      .|..|...   +.+-.++| |+|+.+..|..-+  .-+-||+|-.++...+
T Consensus         9 ~~~~~~~~---~~~~~~~p-CgH~I~~~~f~~~--rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    9 PCVFCGFV---GTKGTVLP-CGHLICDNCFPGE--RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eEEEcccc---cccccccc-ccceeeccccChh--hccCCCCCCCcccCCC
Confidence            56666554   33345788 9999999997653  5567999999987654

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.08  E-value=0.023  Score=62.25  Aligned_cols=49  Identities=29%  Similarity=0.743  Sum_probs=38.1

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccCCCccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~  130 (381)
                      ..|.||++    .+.....+ |+|.||..|+..-+..  ...||+||..+..+.+.
T Consensus       455 ~~c~ic~~----~~~~~it~-c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~  505 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITR-CGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLL  505 (674)
T ss_pred             cccccccc----cccceeec-ccchHHHHHHHhccccccCCCCcHHHHHHHHHHHh
Confidence            58999999    34445666 9999999999988765  33699999988665543

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=0.057  Score=50.00  Aligned_cols=29  Identities=31%  Similarity=0.967  Sum_probs=23.9

Q ss_pred             CCCceeChhcHHHHhcC-----C------CCCCccccccC
Q 016846           97 KCKHAFHVECVDTWLDS-----H------STCPLCRYRVD  125 (381)
Q Consensus        97 ~CgH~FH~~CI~~Wl~~-----~------~tCPlCR~~v~  125 (381)
                      .||.-||.-|+..||..     +      ..||.|-.++.
T Consensus       189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            49999999999999964     1      25999988774

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=92.40  E-value=0.064  Score=52.81  Aligned_cols=45  Identities=24%  Similarity=0.625  Sum_probs=37.3

Q ss_pred             cccccccccccCCcc-eeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846           77 LECAVCLTRFEPTEV-LRLLPKCKHAFHVECVDTWLDSHSTCPLCRY  122 (381)
Q Consensus        77 ~~C~ICle~~~~~~~-v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~  122 (381)
                      ..||||.+.+..... +..++ |||..|..|+......+.+||+|.+
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~-CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLK-CGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccC-cccchHHHHHHHHhccCCCCCcccc
Confidence            359999998766653 44565 9999999999998877899999988

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=92.37  E-value=0.084  Score=37.74  Aligned_cols=41  Identities=22%  Similarity=0.621  Sum_probs=23.5

Q ss_pred             cccccccccCCcceeecCCCCceeChhcHHHHhcCCC--CCCcc
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS--TCPLC  120 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~--tCPlC  120 (381)
                      |.+|.+.+..+...... .|+=.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~-~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNR-DCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS---S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCC-ccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            67888877766433222 4888999999999998754  79988

; PDB: 3NW0_A 2CT0_A.

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=92.06  E-value=0.11  Score=47.14  Aligned_cols=52  Identities=27%  Similarity=0.649  Sum_probs=33.7

Q ss_pred             CcccccccccccCCcceeecC------C-----CCc-eeChhcHHHHhcC------------------------------
Q 016846           76 GLECAVCLTRFEPTEVLRLLP------K-----CKH-AFHVECVDTWLDS------------------------------  113 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp------~-----CgH-~FH~~CI~~Wl~~------------------------------  113 (381)
                      +..|+||||.-.+.   ++|-      .     |+- .-|..||++.-+.                              
T Consensus         2 d~~CpICme~PHNA---VLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (162)
T PF07800_consen    2 DVTCPICMEHPHNA---VLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ   78 (162)
T ss_pred             CccCceeccCCCce---EEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence            45899999986554   2332      1     332 2477899987421                              


Q ss_pred             -CCCCCccccccCCCccc
Q 016846          114 -HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus       114 -~~tCPlCR~~v~~~~~~  130 (381)
                       +..||+||..|....++
T Consensus        79 ~~L~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   79 PELACPLCRGEVKGWTVV   96 (162)
T ss_pred             ccccCccccCceeceEEc
Confidence             23599999999766544

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.85  E-value=0.067  Score=59.26  Aligned_cols=42  Identities=24%  Similarity=0.748  Sum_probs=33.0

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      ..|..|--.++.|  .+.-. |||.||..|+.   .....||.|+...
T Consensus       841 skCs~C~~~LdlP--~VhF~-CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDLP--FVHFL-CGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCccccc--eeeee-cccHHHHHhhc---cCcccCCccchhh
Confidence            3799999888777  33444 99999999998   4566899998743

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=91.64  E-value=0.18  Score=51.46  Aligned_cols=32  Identities=31%  Similarity=0.896  Sum_probs=23.4

Q ss_pred             CCceeChhcHHHHhcC-------------CCCCCccccccCCCcc
Q 016846           98 CKHAFHVECVDTWLDS-------------HSTCPLCRYRVDPEDI  129 (381)
Q Consensus        98 CgH~FH~~CI~~Wl~~-------------~~tCPlCR~~v~~~~~  129 (381)
                      |.-.+|.+|+-+|+-.             +-.||+||+.+...++
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV  355 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV  355 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence            3455788999998743             3479999999876553

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.16  E-value=0.016  Score=59.09  Aligned_cols=51  Identities=18%  Similarity=0.539  Sum_probs=43.0

Q ss_pred             cccccccccccCC-cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846           77 LECAVCLTRFEPT-EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED  128 (381)
Q Consensus        77 ~~C~ICle~~~~~-~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  128 (381)
                      ..|+||.+.|+.. +.+..+- |||.+|..||.+||.....||.|+..+....
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~-~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIV-CGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHh-hcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            3799999998776 5565665 9999999999999999889999999886443

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=90.91  E-value=0.22  Score=37.59  Aligned_cols=40  Identities=25%  Similarity=0.711  Sum_probs=32.7

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL  119 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPl  119 (381)
                      ...|++|-+.|.+++.+++.|.||-.+|..|...    ...|-+
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~   44 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN   44 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence            4479999999998888889999999999999544    444544

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.83  E-value=0.1  Score=52.13  Aligned_cols=42  Identities=43%  Similarity=0.889  Sum_probs=28.8

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      .|--|--.+  .-.-+.+| |+|+||.+|...  ..-+.||.|-..|
T Consensus        92 fCd~Cd~PI--~IYGRmIP-CkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   92 FCDRCDFPI--AIYGRMIP-CKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             eecccCCcc--eeeecccc-cchhhhhhhhhc--CccccCcCcccHH
Confidence            366664443  22346788 999999999764  4466899996554

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=90.05  E-value=0.16  Score=48.00  Aligned_cols=39  Identities=33%  Similarity=0.798  Sum_probs=30.0

Q ss_pred             cccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           79 CAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        79 C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      |-.|-+.   ...+.++| |.|. +|..|-..    -..||+|+....
T Consensus       161 Cr~C~~~---~~~VlllP-CrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLP-CRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeec-ccceEeccccccc----CccCCCCcChhh
Confidence            8888665   66788899 9988 88889554    346999987654

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.44  E-value=0.099  Score=60.25  Aligned_cols=45  Identities=27%  Similarity=0.716  Sum_probs=37.3

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYR  123 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~  123 (381)
                      ...|.||++.+.....+.   .|||.+|..|+..|+..+..||.|+.-
T Consensus      1153 ~~~c~ic~dil~~~~~I~---~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIA---GCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred             ccchHHHHHHHHhcCCee---eechhHhhhHHHHHHHHhccCcchhhh
Confidence            347999999998543332   399999999999999999999999743

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.75  E-value=0.21  Score=54.92  Aligned_cols=40  Identities=25%  Similarity=0.640  Sum_probs=28.4

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPL  119 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPl  119 (381)
                      .|+||--.+..... ... .|+|+.|..|...|+.....||.
T Consensus      1030 ~C~~C~l~V~gss~-~Cg-~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1030 QCAICHLAVRGSSN-FCG-TCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             eeeeEeeEeeccch-hhc-cccccccHHHHHHHHhcCCcCCC
Confidence            46665544433222 233 49999999999999999999984

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.49  E-value=0.15  Score=49.63  Aligned_cols=51  Identities=24%  Similarity=0.677  Sum_probs=35.9

Q ss_pred             CCCCcccccccccccCCcce-eecCCCC-----ceeChhcHHHHhcCC--------CCCCcccccc
Q 016846           73 HKDGLECAVCLTRFEPTEVL-RLLPKCK-----HAFHVECVDTWLDSH--------STCPLCRYRV  124 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v-~~lp~Cg-----H~FH~~CI~~Wl~~~--------~tCPlCR~~v  124 (381)
                      ...+..|=||+..=++.... -+-| |.     |-.|..|+..|+..+        ..||.|+.++
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~P-CrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHP-CRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             cccceeEEEEeccCcccchhhhccc-ccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            34455799999876554322 2344 63     779999999998542        2599999876

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=86.67  E-value=0.44  Score=47.58  Aligned_cols=45  Identities=29%  Similarity=0.775  Sum_probs=35.0

Q ss_pred             CCCCcccccccccccCCcceeecCCC--CceeChhcHHHHhcCCCCCCccccccC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKC--KHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~C--gH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ..+-++||||.+.+..+    ... |  ||..|..|-.+   ....||.||.++.
T Consensus        45 ~~~lleCPvC~~~l~~P----i~Q-C~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPP----IFQ-CDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             chhhccCchhhccCccc----cee-cCCCcEehhhhhhh---hcccCCccccccc
Confidence            34556899999999887    232 6  69999999653   4678999999885

>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls

Probab=86.06  E-value=0.74  Score=40.03  Aligned_cols=20  Identities=5%  Similarity=0.268  Sum_probs=8.5

Q ss_pred             hhhHHHHHHHHHHHHHHHHH
Q 016846            4 VVGVLTTMFSMTFLLLLYAK   23 (381)
Q Consensus         4 II~Vl~iif~l~~llliyik   23 (381)
                      +++||+++|+|+|++++++.
T Consensus         4 l~~iii~~i~l~~~~~~~~~   23 (130)
T PF12273_consen    4 LFAIIIVAILLFLFLFYCHN   23 (130)
T ss_pred             eHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444433

Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.01  E-value=0.41  Score=53.17  Aligned_cols=55  Identities=31%  Similarity=0.723  Sum_probs=41.5

Q ss_pred             CCCcccccccccccCCcceeecCCCC-----ceeChhcHHHHhcC--CCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDS--HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~--~~tCPlCR~~v~~~~~~  130 (381)
                      +++..|-||..+-..++.+- -| |+     ...|.+|+.+|+.-  ...|-+|..++..+++.
T Consensus        10 ~d~~~CRICr~e~~~d~pLf-hP-CKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY   71 (1175)
T COG5183          10 EDKRSCRICRTEDIRDDPLF-HP-CKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIY   71 (1175)
T ss_pred             ccchhceeecCCCCCCCcCc-cc-ccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeec
Confidence            34568999998876666653 34 65     34899999999975  45699999998776654

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.69  E-value=0.31  Score=54.50  Aligned_cols=33  Identities=24%  Similarity=0.566  Sum_probs=26.2

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW  110 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W  110 (381)
                      +..|.+|.-.+-.. .-.+-| |||.||+.||.+-
T Consensus       817 ~d~C~~C~~~ll~~-pF~vf~-CgH~FH~~Cl~~~  849 (911)
T KOG2034|consen  817 QDSCDHCGRPLLIK-PFYVFP-CGHCFHRDCLIRH  849 (911)
T ss_pred             ccchHHhcchhhcC-cceeee-ccchHHHHHHHHH
Confidence            45899999887654 445667 9999999999765

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=85.28  E-value=0.54  Score=46.59  Aligned_cols=51  Identities=22%  Similarity=0.580  Sum_probs=35.9

Q ss_pred             cccccccc-ccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCc
Q 016846           78 ECAVCLTR-FEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPED  128 (381)
Q Consensus        78 ~C~ICle~-~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  128 (381)
                      .|++|-.. |-.++.......|+|..|..|++..+.. ...||.|-..+-...
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~n   54 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNN   54 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcc
Confidence            59999764 4555533333349999999999998866 457999976654333

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=84.77  E-value=0.29  Score=47.37  Aligned_cols=49  Identities=24%  Similarity=0.621  Sum_probs=36.2

Q ss_pred             Cccccccccc-ccCCc-ceeecCCCCceeChhcHHHHhcCC-CCCC--cccccc
Q 016846           76 GLECAVCLTR-FEPTE-VLRLLPKCKHAFHVECVDTWLDSH-STCP--LCRYRV  124 (381)
Q Consensus        76 ~~~C~ICle~-~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~-~tCP--lCR~~v  124 (381)
                      +..||||..+ |-.|+ ++.+-|.|-|..|..|++.-+... ..||  -|.+-+
T Consensus        10 d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kIL   63 (314)
T COG5220          10 DRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKIL   63 (314)
T ss_pred             cccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHH
Confidence            4479999875 44444 444556799999999999998775 4699  885433

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=84.64  E-value=0.44  Score=46.31  Aligned_cols=51  Identities=25%  Similarity=0.639  Sum_probs=37.0

Q ss_pred             CcccccccccccCCcc-eeecCCCC-----ceeChhcHHHHhc--CCCCCCccccccCCC
Q 016846           76 GLECAVCLTRFEPTEV-LRLLPKCK-----HAFHVECVDTWLD--SHSTCPLCRYRVDPE  127 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~-v~~lp~Cg-----H~FH~~CI~~Wl~--~~~tCPlCR~~v~~~  127 (381)
                      +..|-||.++...... ....| |.     +..|..|+..|+.  ....|.+|...+...
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~p-C~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISP-CSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccC-ccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4689999997654432 23455 64     5589999999997  466799998866443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=83.58  E-value=0.56  Score=41.59  Aligned_cols=52  Identities=17%  Similarity=0.413  Sum_probs=36.3

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~  126 (381)
                      .-.+|.||.|...+..-+.----||...|..|-...++.   +..||+|+..+..
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            345899999986554322111139999999988775543   7789999988754

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=82.80  E-value=0.87  Score=46.85  Aligned_cols=49  Identities=16%  Similarity=0.346  Sum_probs=39.0

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCcccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRV  124 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v  124 (381)
                      .-+.|||=.+.-.+.+....|. |||+...+-+.+..+..   ..||.|=...
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~-CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLI-CGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             ceeecccchhhccCCCCCeeee-ccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            4568999888877777778887 99999999999977653   4699994433

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=81.86  E-value=0.69  Score=51.31  Aligned_cols=50  Identities=16%  Similarity=0.252  Sum_probs=35.1

Q ss_pred             CcccccccccccCCc---ceeecCCCCceeChhcHHHHhcC------CCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTE---VLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~---~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~  125 (381)
                      ...|.||.-++..++   .+..+..|+|.||..||..|+.+      +-.|++|...|.
T Consensus        96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~  154 (1134)
T KOG0825|consen   96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG  154 (1134)
T ss_pred             ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence            456888877776632   22222359999999999999864      346899977664

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=81.20  E-value=0.41  Score=52.40  Aligned_cols=48  Identities=33%  Similarity=0.811  Sum_probs=36.8

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcC---CCCCCccccccCCC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS---HSTCPLCRYRVDPE  127 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~---~~tCPlCR~~v~~~  127 (381)
                      ..+|+||+..+..+   ..+ +|.|.|+..|+..-|..   ...||+|+..+...
T Consensus        21 ~lEc~ic~~~~~~p---~~~-kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~   71 (684)
T KOG4362|consen   21 ILECPICLEHVKEP---SLL-KCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKR   71 (684)
T ss_pred             hccCCceeEEeecc---chh-hhhHHHHhhhhhceeeccCccccchhhhhhhhhh
Confidence            34899999999887   233 59999999999876654   34699998666433

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.00  E-value=0.62  Score=47.98  Aligned_cols=38  Identities=29%  Similarity=0.737  Sum_probs=27.3

Q ss_pred             CCcccccccc-cccCCcceeecCCCCceeChhcHHHHhcC
Q 016846           75 DGLECAVCLT-RFEPTEVLRLLPKCKHAFHVECVDTWLDS  113 (381)
Q Consensus        75 ~~~~C~ICle-~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~  113 (381)
                      ...+|.||.. .....+...+. +|+|.||.+|+.+.++.
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~-~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVL-KCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             ccccCccCccccccHhhhHHHh-cccchhhhHHhHHHhhh
Confidence            3458999994 44433444444 59999999999988764

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=80.80  E-value=0.76  Score=33.80  Aligned_cols=43  Identities=28%  Similarity=0.681  Sum_probs=21.4

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcC-----CCCCCccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYR  123 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~  123 (381)
                      +.|+|....+..+  ++... |.|.-|.+ +..||..     .-.||+|.++
T Consensus         3 L~CPls~~~i~~P--~Rg~~-C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIP--VRGKN-CKHLQCFD-LESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSE--EEETT---SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeC--ccCCc-CcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence            4799999888665  55555 99985544 5566643     3369999763

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-16
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		1e-10
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		2e-07
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		3e-07
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		9e-07
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		1e-05

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 82.0 bits (201), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 33/50 (66%), Positives = 35/50 (70%)
Query: 75  DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
           DG+ECAVCL   E  E  R LP+C H FH ECVD WL SHSTCPLCR  V
Sbjct: 4   DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/65 (43%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 62  LPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           LP +RF       +   C VC+  FE  ++LR+LP C H FH +CVD WL ++ TCP+CR
Sbjct: 9   LPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICR 67
Query: 122 YRVDP 126
               P
Sbjct: 68  ADSGP 72

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/46 (50%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 79  CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
           CAVCL  F+P + L + P CKHAFH +C+  WL+    CPLC   V
Sbjct: 18  CAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPV 62

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 52.8 bits (125), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 1/50 (2%)
Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
           +C +CL+  E  E +R LP C H FH  CVD WL ++  CP+CR  ++ +
Sbjct: 16  KCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 51.2 bits (121), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 76  GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           GLEC VC   +   E +R LP C H FH  C+  WL+ H +CP+CR
Sbjct: 15  GLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCR 59

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 79  CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP 126
           C +C + +   +V   LP C H FH  CV  WL    TCP+CR    P
Sbjct: 43  CPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	1e-34
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	1e-30
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	7e-28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	9e-26
2ect_A	78	Ring finger protein 126; metal binding protein, st	1e-24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-22
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	2e-19
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	2e-18
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-18
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	5e-15
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-13
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	1e-12
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-12
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	6e-12
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	7e-11
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	1e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	4e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	7e-09
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	2e-08
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	3e-08
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	5e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	2e-07
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-07
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	3e-07
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	5e-07
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	7e-07
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	1e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	2e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	3e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	3e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	4e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-06
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	6e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	2e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	4e-05
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	5e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	5e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	1e-04
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	2e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	2e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	2e-04
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	6e-04
1z6u_A	150	NP95-like ring finger protein isoform B; structura	9e-04

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score =  121 bits (306), Expect = 1e-34
 Identities = 28/69 (40%), Positives = 38/69 (55%), Gaps = 1/69 (1%)

Query: 58  VIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTC 117
               LP +RF       +   C VC+  FE  ++LR+LP C H FH +CVD WL ++ TC
Sbjct: 5   SSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTC 63

Query: 118 PLCRYRVDP 126
           P+CR    P
Sbjct: 64  PICRADSGP 72

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score =  110 bits (277), Expect = 1e-30
 Identities = 33/53 (62%), Positives = 35/53 (66%)

Query: 72  GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
              DG+ECAVCL   E  E  R LP+C H FH ECVD WL SHSTCPLCR  V
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  104 bits (261), Expect = 7e-28
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 55  DRTVIESLPIFRFG-ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS 113
            +  I++LP              + C +C + +   +V   LP C H FH  CV  WL  
Sbjct: 18  SKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQK 76

Query: 114 HSTCPLCRYRVDP 126
             TCP+CR    P
Sbjct: 77  SGTCPVCRCMFPP 89

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 97.8 bits (244), Expect = 9e-26
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 1/54 (1%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128
              +C +CL+  E  E +R LP C H FH  CVD WL ++  CP+CR  ++ + 
Sbjct: 13  TEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEAQL 65

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 94.8 bits (236), Expect = 1e-24
 Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 74  KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128
             GLEC VC   +   E +R LP C H FH  C+  WL+ H +CP+CR  +  ++
Sbjct: 13  GSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQN 66

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 89.1 bits (221), Expect = 2e-22
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 68  GALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
           G ++       CAVCL  F+P + L + P CKHAFH +C+  WL+    CPLC   V   
Sbjct: 7   GKVKELNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65

Query: 128 D 128
            
Sbjct: 66  A 66

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 80.5 bits (199), Expect = 2e-19
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 68  GALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
           G ++   D  EC +C+          +LP C H+F  +C+D W D H  CP+CR ++   
Sbjct: 7   GRVKQLTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61

Query: 128 D 128
           +
Sbjct: 62  N 62

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 78.4 bits (193), Expect = 2e-18
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 1/51 (1%)

Query: 71  RGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
           R       C  C    +  + + +  +C H+FH  C+  W+  ++ CPLC+
Sbjct: 22  RVQVMDA-CLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQ 71

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 76.2 bits (188), Expect = 6e-18
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
            C +CL     + V+  +  C H  H  C +  L     CPLC 
Sbjct: 7   GCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCS 50

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD 125
            C +CL   +P+     LP C HAF   C+  W+  + TCPLC+  V+
Sbjct: 7   RCPICLE--DPSNYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 61.7 bits (150), Expect = 9e-13
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 77  LECAVCLTRFEPTEVLRLLP---KCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
           + C +C+  +        L    +C H F  +C+   L + +TCP CR +++ +  
Sbjct: 4   VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 59

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 61.5 bits (149), Expect = 1e-12
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 3/54 (5%)

Query: 77  LECAVCLTRFEPTEVLRLLP---KCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
           + C +C+  +        L    +C H F  +C+   L + +TCP CR +++ +
Sbjct: 16  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 77  LECAVCLTRFEPTEVLRLLP---KCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
           + C +C+  +        L    +C H F  +C+   L + +TCP CR +++ +  
Sbjct: 11  VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 66

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 61.0 bits (147), Expect = 6e-12
 Identities = 14/49 (28%), Positives = 17/49 (34%)

Query: 73  HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
               +EC          E       C HAFH  C+  WL +   CPL  
Sbjct: 48  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 96

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 58.3 bits (140), Expect = 7e-11
 Identities = 14/49 (28%), Positives = 17/49 (34%)

Query: 73  HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
               +EC          E       C HAFH  C+  WL +   CPL  
Sbjct: 59  MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 107

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-DSHSTCPLCRYRVDPEDI 129
           +   C +C+ +       RL P C       C+  WL +  + CP CR  +   ++
Sbjct: 21  EVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLREL 73

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 51.8 bits (124), Expect = 4e-09
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 7/57 (12%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS 132
            ECA+CL     P      LP CKH F   CV         C LCR  + PED L S
Sbjct: 16  PECAICLQTCVHPV----SLP-CKHVFCYLCVKGASWLGKRCALCRQEI-PEDFLDS 66

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
           + C++C     + T     + +C H F   C+       + CP C   V
Sbjct: 16  ILCSICKGYLIDAT----TITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEK 135
           L C +C   F + T     + +C H+F   C+  +L++   CP+C  +V     LL+   
Sbjct: 16  LMCVLCGGYFIDAT----TIIECLHSFCKTCIVRYLETSKYCPICDVQVHKTRPLLNIRS 71

Query: 136 N 136
           +
Sbjct: 72  D 72

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.5 bits (118), Expect = 3e-08
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 77  LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCR 121
             C +C   F+   V     KC+H F   C      +   C +C 
Sbjct: 16  FRCFICRQAFQNPVVT----KCRHYFCESCALEHFRATPRCYICD 56

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 48.8 bits (116), Expect = 5e-08
 Identities = 10/46 (21%), Positives = 16/46 (34%), Gaps = 5/46 (10%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCR 121
            C +C +        +    C    H+ CV  +  S+    CP C 
Sbjct: 17  ICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCN 59

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 73  HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPEDIL 130
                 C +C    +     ++ P C H     C+ +W +S    CP CR  +   + +
Sbjct: 329 GSTFQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 383

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 51.8 bits (123), Expect = 2e-07
 Identities = 12/59 (20%), Positives = 17/59 (28%), Gaps = 15/59 (25%)

Query: 78  ECAVCLTRF----EPTEVLRLLPKCKHAFHVECVDTWLDS-----------HSTCPLCR 121
            C +C        E   V     KC    H  C++ W  +              CP C+
Sbjct: 310 RCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCK 368

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 48.2 bits (115), Expect = 2e-07
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 5/54 (9%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
           L C +C   F        ++P+C H +   C+  +L   + CP C   V   D+
Sbjct: 23  LRCGICFEYFNIAM----IIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL 72

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 46.7 bits (111), Expect = 3e-07
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 74  KDGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVDPEDIL 130
            D L C +C     +      ++P C +++  EC+ T L      TCP C       D L
Sbjct: 13  PDELLCLICKDIMTDAV----VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 68

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.5 bits (108), Expect = 5e-07
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 75  DGLECAVCLTRFEPTEVLR--LLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPEDIL 130
           D  +C  C        VL      +C H F   C+   L S S  C  C+  +  + + 
Sbjct: 14  DKYKCEKCH------LVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKVF 66

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 46.8 bits (110), Expect = 7e-07
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 19/63 (30%)

Query: 78  ECAVCLTRFEP--------------TEVLRLLPKCKHAFHVECVDTWL-----DSHSTCP 118
           +C +C+ +                   V+  L KC HAFH+ C+         D    CP
Sbjct: 27  DCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCP 86

Query: 119 LCR 121
            C+
Sbjct: 87  SCK 89

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 7/55 (12%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDI 129
           + C +C     +P E       CKH F   C+   L    S CP CRY   P D+
Sbjct: 24  ISCQICEHILADPVET-----SCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 44.7 bits (105), Expect = 2e-06
 Identities = 11/57 (19%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 74  KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI 129
           +D +EC +C+   E  ++      C +     C        +  CP CR     +  
Sbjct: 9   EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA 65

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 46.2 bits (109), Expect = 2e-06
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 6/49 (12%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
           L+C +C   F E          C H+F   C++ W+     CP+CR  +
Sbjct: 65  LQCIICSEYFIEAV-----TLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 45.2 bits (107), Expect = 3e-06
 Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 11/70 (15%)

Query: 75  DGLECAVCLTRFEPTEVLR--LLPKCKHAFHVECVDTWL-DSHSTCPLCRYRVDPEDIL- 130
              EC +CL        LR  +   C H F   C+   + D+   CP+    +    +  
Sbjct: 17  SKYECPICL------MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70

Query: 131 -LSFEKNIDS 139
               ++ I S
Sbjct: 71  DNFAKREILS 80

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 3/58 (5%)

Query: 74  KDGLECAVCLTRFEPTEVLRLLP---KCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128
              + C +C+  +        L    +C H F  +C+   L + +TCP CR +++ + 
Sbjct: 5   SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR 62

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 45.5 bits (107), Expect = 3e-06
 Identities = 13/60 (21%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 73  HKDGLECAVCLTRFE---PTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
               + C +C+  +        L +  +C H F  +C+   L + +TCP CR +++ +  
Sbjct: 69  GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRY 128

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 44.0 bits (104), Expect = 4e-06
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 74  KDGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVDPEDIL 130
            D L C +C     +      ++P C +++  EC+ T L      TCP C       D L
Sbjct: 11  PDELLCLICKDIMTDAV----VIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDAL 66

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 75  DGLECAVCLTRFEPTEVLR--LLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDIL- 130
              EC +CL        LR  +   C H F   C+   +      CP+    +    +  
Sbjct: 17  SKYECPICL------MALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFP 70

Query: 131 -LSFEKNIDS 139
               ++ I S
Sbjct: 71  DNFAKREILS 80

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 43.2 bits (102), Expect = 6e-06
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 74  KDGLECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDSHS---TCPLCRYRV 124
           ++ LEC +C+  F   ++  +LL  C H    +C++  L S      CP C    
Sbjct: 13  REVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKIT 66

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 56  RTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH- 114
           R ++E     R       K    C +C +     +       C    H+ CV  +  S+ 
Sbjct: 163 RAILEMEQYIRETYPDAVKI---CNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNA 216

Query: 115 -STCPLCR 121
              CP C 
Sbjct: 217 EPRCPHCN 224

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 41.8 bits (98), Expect = 4e-05
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 7/54 (12%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI 129
           L C+ C     EP      L  C+H F   CV   + +   CP+C      +D+
Sbjct: 23  LRCSRCTNILREPV----CLGGCEHIFCSNCVSDCIGT--GCPVCYTPAWIQDL 70

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 42.0 bits (98), Expect = 5e-05
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 19/96 (19%)

Query: 44  PSSTNRKNSGIDRTVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLR--LLPKCKHA 101
           P S      G  +T++ +            +    C+ C        VLR     +C H 
Sbjct: 9   PGSLELLQPGFSKTLLGTKL----------EAKYLCSACR------NVLRRPFQAQCGHR 52

Query: 102 FHVECVDTWLDSH-STCPLCRYRVDPEDILLSFEKN 136
           +   C+ + L S    C  C +    E+ +   E +
Sbjct: 53  YCSFCLASILSSGPQNCAACVHEGIYEEGISILESS 88

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 5e-05
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 74  KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDP 126
           ++  +C  C               C+H    +C+D    +   +CP CRY +  
Sbjct: 50  EETFQCICCQELVFRPITT----VCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 9/49 (18%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
           L C  C      P    +LLP C H     C++    S   CP+C+   
Sbjct: 7   LRCQQCQAEAKCP----KLLP-CLHTLCSGCLEA---SGMQCPICQAPW 47

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 39.9 bits (93), Expect = 2e-04
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 7/50 (14%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRV 124
            +C +C+    EP      LP C H     C  + ++  S  CP CR RV
Sbjct: 16  CQCGICMEILVEPV----TLP-CNHTLCKPCFQSTVEKASLCCPFCRRRV 60

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 5/54 (9%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPKCK---HAFHVECVDTWLDS--HSTCPLCRYR 123
               C +C    +    L     C    H  H  C+  W+ S     C LC+Y 
Sbjct: 14  SQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 38.4 bits (89), Expect = 2e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)

Query: 75  DGLECAVCLT-RFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCR 121
           D   C  C T ++    +  ++  C H     CVD      +  CP C 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECG 50

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFH-VECVDTWLDSHSTCPLCRYRVD 125
            C++C  R  P +   +  +  H      C      + ++CP+C+  + 
Sbjct: 9   PCSLCEKR--PRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 38.5 bits (89), Expect = 9e-04
 Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 7/56 (12%)

Query: 77  LECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPEDIL 130
             C  C     +P        +C H    +C+     +   +CP CR+ +    I+
Sbjct: 79  FMCVCCQELVYQPVTT-----ECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIM 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.64
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.59
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.47
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.45
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.43
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.41
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.37
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.36
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.33
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.32
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.31
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.3
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.27
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.27
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.24
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.23
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.23
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.23
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.19
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.17
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.17
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.15
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.15
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.15
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.15
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.15
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.13
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.13
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.13
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.13
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.11
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.11
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.07
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.07
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.03
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.01
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.01
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.98
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.97
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.97
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	98.94
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.94
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.93
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.93
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.91
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.9
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.87
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.86
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.83
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.74
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.72
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.68
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.66
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.61
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.58
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.57
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.57
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.44
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.38
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.38
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.37
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.34
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.3
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.22
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.81
3nw0_A	238	Non-structural maintenance of chromosomes element	97.8
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.98
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.88
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	91.93
1we9_A	64	PHD finger family protein; structural genomics, PH	91.29
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	87.1
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	86.11
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	85.53
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	84.63
3u5n_A	207	E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, b	84.62
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	84.54
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	84.11
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	83.53
2yt5_A	66	Metal-response element-binding transcription facto	82.3
2yql_A	56	PHD finger protein 21A; PHD domain, structural gen	81.88
1wep_A	79	PHF8; structural genomics, PHD domain, riken struc	81.73

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.64  E-value=4.2e-16  Score=125.81  Aligned_cols=82  Identities=30%  Similarity=0.657  Sum_probs=70.2

Q ss_pred             CCCccccCCCCCHHHHhhCCceeecccCC-CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccc
Q 016846           44 PSSTNRKNSGIDRTVIESLPIFRFGALRG-HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRY  122 (381)
Q Consensus        44 ~~~~~~~~~gl~~~~i~~Lp~~~~~~~~~-~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~  122 (381)
                      .........+++++.|+.||.+.+..... ..++..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||.
T Consensus         7 ~~~~~~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~Fh~~Ci~~wl~~~~~CP~Cr~   85 (91)
T 2l0b_A            7 HHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP-CHHYFHKPCVSIWLQKSGTCPVCRC   85 (91)
T ss_dssp             CSCCSSCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEET-TTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred             cCCCCcCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecC-CCChHHHHHHHHHHHcCCcCcCcCc
Confidence            33455667899999999999999876443 445678999999999988888999 9999999999999999999999999


Q ss_pred             ccCC
Q 016846          123 RVDP  126 (381)
Q Consensus       123 ~v~~  126 (381)
                      .+.+
T Consensus        86 ~~~~   89 (91)
T 2l0b_A           86 MFPP   89 (91)
T ss_dssp             BSSC
T ss_pred             cCCC
Confidence            8854

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=5.8e-16  Score=120.00  Aligned_cols=70  Identities=40%  Similarity=0.954  Sum_probs=61.5

Q ss_pred             HHHhhCCceeecccCCCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           57 TVIESLPIFRFGALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        57 ~~i~~Lp~~~~~~~~~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      ..++.||..++.......++..|+||++.|..++.++.+| |+|.||..||..|+..+.+||+||+.+.+.
T Consensus         4 ~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~-C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            4 GSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLP-CNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEET-TTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             hhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEEC-CCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            3456789999887776777789999999999998888998 999999999999999999999999988653

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.47  E-value=4.6e-14  Score=109.73  Aligned_cols=56  Identities=39%  Similarity=0.971  Sum_probs=49.5

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  129 (381)
                      ..+..+|+||++.|..+..+..++ |+|.||..||..|+..+.+||+||..+...++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLP-CNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECT-TSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCCeeCCccccCCCCEEEeC-CCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            345668999999999888888898 99999999999999999999999999876554

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.45  E-value=5.2e-14  Score=102.21  Aligned_cols=51  Identities=65%  Similarity=1.300  Sum_probs=45.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ++.+|+||++.|..++.+..++.|+|.||..||.+|++.+.+||+||+++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            456899999999988888888779999999999999999999999998763

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1e-13  Score=106.74  Aligned_cols=53  Identities=43%  Similarity=0.925  Sum_probs=47.4

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ..++..|+||++.|..+..+..++ |+|.||..||.+|+..+.+||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICP-CKHAFHRKCLIKWLEVRKVCPLCNMPVLQ   64 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEET-TTEEEEHHHHHHHHHHCSBCTTTCCBCSS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcC-CCCEecHHHHHHHHHcCCcCCCcCccccc
Confidence            344568999999999998888888 99999999999999999999999998854

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.41  E-value=1.3e-13  Score=104.74  Aligned_cols=53  Identities=40%  Similarity=0.962  Sum_probs=47.2

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ..+...|+||++.|..++.++.++ |+|.||..||..|+..+.+||+||..+..
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLP-CMHLFHQVCVDQWLITNKKCPICRVDIEA   63 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCSBSCS
T ss_pred             CCCCCCCeeCCccccCCCcEEEeC-CCCHHHHHHHHHHHHcCCCCcCcCccccC
Confidence            345568999999998888888898 99999999999999999999999998854

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.37  E-value=1.7e-13  Score=108.35  Aligned_cols=53  Identities=25%  Similarity=0.701  Sum_probs=42.8

Q ss_pred             CCcccccccccccC-----------CcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           75 DGLECAVCLTRFEP-----------TEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~-----------~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      ++..|+||++.|..           .+.++.++.|+|.||..||.+||..+.+||+||+++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            34578888888854           344556656999999999999999999999999988644

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.36  E-value=2.1e-13  Score=103.62  Aligned_cols=57  Identities=21%  Similarity=0.632  Sum_probs=47.9

Q ss_pred             CCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      .++..|+||++.|..+    ..+..++ |||.||..||.+|+..+.+||+||..+...++..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   68 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   68 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCCCSCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCC-CCChHhHHHHHHHHHcCCCCCCCCCccChhheee
Confidence            4556899999998764    4456777 9999999999999999999999999998776543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.33  E-value=3.5e-13  Score=100.08  Aligned_cols=56  Identities=21%  Similarity=0.626  Sum_probs=47.1

Q ss_pred             CCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           75 DGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        75 ~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      ++.+|+||++.+..+    +.+..++ |||.||..|+.+|+..+.+||+||.++...++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~   61 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   61 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEET-TSCEEEHHHHHHHHHHCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCCccChhhhCccccCCCEEeCC-CCCchhHHHHHHHHHcCCCCCCCCccCCccceee
Confidence            356899999999764    3456777 9999999999999999999999999998776544

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.32  E-value=8.7e-13  Score=95.55  Aligned_cols=51  Identities=29%  Similarity=0.723  Sum_probs=43.0

Q ss_pred             CCCcccccccccccCCc-ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTE-VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~-~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      .++..|+||++.|...+ .+..++ |+|.||..||.+|+..+.+||+||.++.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            3 SGSSGCPICLEDIHTSRVVAHVLP-CGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             SCCCSCTTTCCCCCTTTSCEEECT-TSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCCcCcccChhhcCCCcCeEecC-CCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            34568999999996543 466777 9999999999999999999999998763

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.31  E-value=8.9e-13  Score=109.50  Aligned_cols=50  Identities=30%  Similarity=0.705  Sum_probs=40.9

Q ss_pred             CcccccccccccCCc---------------ceeecCCCCceeChhcHHHHh-----cCCCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~v~~  126 (381)
                      +..|+||++.|..+.               .++.++ |+|.||..||..|+     ..+.+||+||..+..
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCC-CCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence            458999999997653               334666 99999999999999     457799999998753

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=7.8e-13  Score=99.63  Aligned_cols=53  Identities=23%  Similarity=0.698  Sum_probs=44.2

Q ss_pred             CCCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           73 HKDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ..+...|+||++.|..+    ..+..++ |||.||..||..|+..+.+||+||.++..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECS-SSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCC-CCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34566899999999764    3346677 99999999999999999999999998753

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=1.6e-12  Score=98.93  Aligned_cols=51  Identities=35%  Similarity=0.962  Sum_probs=43.9

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED  128 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  128 (381)
                      ..+...|+||++.+..    ..++ |+|.||..||..|+..+..||+||..+...+
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILP-CAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEET-TTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCCeeCCcCccC----cccC-CCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            3456689999999876    5677 9999999999999999999999999986544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.4e-12  Score=98.00  Aligned_cols=56  Identities=20%  Similarity=0.443  Sum_probs=45.7

Q ss_pred             CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      ...+...|+||++.+.++  +.+++ |||.||..||..|+..+..||+||..+...++.
T Consensus        11 ~~~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDA--TTITE-CLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSC--EECSS-SCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             hcCCCCCCCCCChHHHCc--CEECC-CCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            344567899999999765  33346 999999999999999889999999999766543

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.24  E-value=3.2e-12  Score=106.74  Aligned_cols=50  Identities=28%  Similarity=0.636  Sum_probs=42.6

Q ss_pred             CCcccccccccccCCc---------------ceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ++..|+||++.|..+.               .++.++ |+|.||..||..||..+.+||+||+++.
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecc-cCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            4568999999998652               255676 9999999999999999999999999874

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=2.3e-12  Score=98.69  Aligned_cols=52  Identities=33%  Similarity=0.546  Sum_probs=43.7

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED  128 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  128 (381)
                      ..+...|+||++.+.++   +.++ |||.||..||..|+..+..||+||..+....
T Consensus        12 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHP---VSLP-CKHVFCYLCVKGASWLGKRCALCRQEIPEDF   63 (71)
T ss_dssp             SSSCCBCSSSSSBCSSE---EEET-TTEEEEHHHHHHCTTCSSBCSSSCCBCCHHH
T ss_pred             CCCCCCCccCCcccCCC---EEcc-CCCHHHHHHHHHHHHCCCcCcCcCchhCHhh
Confidence            34556899999998665   4667 9999999999999999999999999886443

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.23  E-value=5.8e-12  Score=95.14  Aligned_cols=48  Identities=35%  Similarity=0.852  Sum_probs=41.7

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      .+..|+||++.+.++  +..++ |||.||..|+..|+..+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~-C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCC--cEecC-CCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            345899999998653  46777 9999999999999999999999999885

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=7e-12  Score=98.84  Aligned_cols=56  Identities=27%  Similarity=0.704  Sum_probs=46.2

Q ss_pred             CCCCcccccccccccCCcc-eeecCCCCceeChhcHHHHhcCC---CCCCccccccCCCcc
Q 016846           73 HKDGLECAVCLTRFEPTEV-LRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRVDPEDI  129 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~-v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~~  129 (381)
                      ..+..+|+||++.|...+. .+.++ |||.||..||..|+..+   ..||+||..+...++
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i   71 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLH-CGHTICRQCLEKLLASSINGVRCPFCSKITRITSL   71 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECS-SSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred             ccCCCCCccCCccccccCCCeEECC-CCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence            3456789999999987654 56777 99999999999999875   789999999876543

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.3e-11  Score=94.22  Aligned_cols=52  Identities=23%  Similarity=0.657  Sum_probs=42.6

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCccccccCCCc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLCRYRVDPED  128 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlCR~~v~~~~  128 (381)
                      ..+...|+||++.|.++   +.++ |||.||..||..|+.   ....||+||..+..++
T Consensus        17 ~~~~~~C~IC~~~~~~~---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   71 (73)
T 2ysl_A           17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNA   71 (73)
T ss_dssp             CCCCCBCTTTCSBCSSE---EECT-TCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCC
T ss_pred             CccCCEeccCCcccCCe---EEcC-CCChhhHHHHHHHHHcCCCCCCCCCCCCcCCccc
Confidence            34567899999998754   4567 999999999999997   4568999999987654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=1.4e-11  Score=92.80  Aligned_cols=52  Identities=21%  Similarity=0.547  Sum_probs=43.0

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCCCcc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~~  129 (381)
                      .+...|+||++.+.++.   .++ |||.||..||..|+. ....||+||..+..+++
T Consensus        13 ~~~~~C~IC~~~~~~p~---~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A           13 EDKYKCEKCHLVLCSPK---QTE-CGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             CCCEECTTTCCEESSCC---CCS-SSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             CcCCCCCCCChHhcCee---ECC-CCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            45678999999998763   356 999999999999995 56789999999876543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.17  E-value=1.9e-11  Score=94.48  Aligned_cols=53  Identities=28%  Similarity=0.576  Sum_probs=42.6

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccCCCc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVDPED  128 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~  128 (381)
                      ..+...|+||++.|.++   +.++.|||.||..||..|+..+  ..||+||+++...+
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            34567899999999876   3455599999999999999865  68999999765433

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.15  E-value=1.3e-11  Score=95.57  Aligned_cols=54  Identities=22%  Similarity=0.571  Sum_probs=44.5

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-------CCCCCccccccCCCccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-------HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-------~~tCPlCR~~v~~~~~~  130 (381)
                      ..+...|+||++.|.++   +.++ |||.||..||..|+..       ...||+||..+...++.
T Consensus         9 ~~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~   69 (79)
T 2egp_A            9 VQEEVTCPICLELLTEP---LSLD-CGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQ   69 (79)
T ss_dssp             CCCCCEETTTTEECSSC---CCCS-SSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGG
T ss_pred             cccCCCCcCCCcccCCe---eECC-CCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCC
Confidence            34567899999999776   3467 9999999999999986       56899999999765543

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.15  E-value=2.6e-11  Score=94.45  Aligned_cols=53  Identities=25%  Similarity=0.645  Sum_probs=44.4

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC------CCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~~~  130 (381)
                      .+...|+||++.|..+   ..++ |||.||..||..|+..      ...||+||..+...++.
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~   75 (85)
T 2ecw_A           17 KEEVTCPICLELLKEP---VSAD-CNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLK   75 (85)
T ss_dssp             CTTTSCTTTCSCCSSC---EECT-TSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCE
T ss_pred             ccCCCCcCCChhhCcc---eeCC-CCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCC
Confidence            4556899999999776   3677 9999999999999987      67899999998766544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.7e-11  Score=96.00  Aligned_cols=49  Identities=18%  Similarity=0.522  Sum_probs=42.3

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ..+...|+||++.|..+   ++++ |||.||..||..|+.....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNP---VVTK-CRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSE---EECT-TSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCe---eEcc-CCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34456899999999664   3577 9999999999999998899999999985

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.15  E-value=2.4e-11  Score=94.23  Aligned_cols=53  Identities=17%  Similarity=0.486  Sum_probs=44.6

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~  130 (381)
                      .+.+.|+||++.|.++   +.++ |||.||..||..|+.. +.+||+||.++...++.
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~-CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~   59 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLT   59 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCE
T ss_pred             cccCCCCCccccccCC---EEcC-CCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCc
Confidence            4567899999999776   4567 9999999999999987 78899999998766543

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=1.8e-11  Score=97.22  Aligned_cols=53  Identities=28%  Similarity=0.710  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCcceeecCCCC-----ceeChhcHHHHhcCC--CCCCccccccCCCc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCK-----HAFHVECVDTWLDSH--STCPLCRYRVDPED  128 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-----H~FH~~CI~~Wl~~~--~tCPlCR~~v~~~~  128 (381)
                      .++..|.||+++|..++.+ ++| |+     |.||..||++||..+  .+||+||..+..+.
T Consensus        13 ~~~~~C~IC~~~~~~~~~l-~~p-C~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~   72 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPL-ITP-CHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMET   72 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCE-ECS-SSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCC
T ss_pred             CCCCCCeEcCccccCCCee-Eec-cccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCc
Confidence            4456899999999877766 588 96     999999999999875  58999999986543

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.13  E-value=1.1e-11  Score=106.92  Aligned_cols=48  Identities=29%  Similarity=0.862  Sum_probs=42.0

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      +..|+||++.|.++   +.+| |||.||..||..|+..+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~~~~---~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEA---VTLN-CAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSE---EEET-TSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCc---eECC-CCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            45799999999765   4677 999999999999999999999999998643

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=3.4e-11  Score=93.79  Aligned_cols=53  Identities=32%  Similarity=0.765  Sum_probs=44.0

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC------CCCCCccccccCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS------HSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~------~~tCPlCR~~v~~~~~~  130 (381)
                      .+...|+||++.+..+   ..++ |||.||..|+..|+..      ...||+||..+...++.
T Consensus        17 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~   75 (85)
T 2ecv_A           17 KEEVTCPICLELLTQP---LSLD-CGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIR   75 (85)
T ss_dssp             CCCCCCTTTCSCCSSC---BCCS-SSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCC
T ss_pred             cCCCCCCCCCcccCCc---eeCC-CCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcC
Confidence            4556899999999775   3467 9999999999999976      77899999998765543

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.13  E-value=2.4e-11  Score=101.98  Aligned_cols=56  Identities=21%  Similarity=0.643  Sum_probs=47.6

Q ss_pred             CCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           75 DGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        75 ~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      +...|+||++.|.++    ..++.++ |||.||..||.+|+..+.+||+||+.+....+..
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~   65 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHP   65 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEET-TCCEEEHHHHHHHHTTCSBCTTTCCBCTTTCEEE
T ss_pred             CCCCCcccChhhhCccccccCeEecC-CCChhhHHHHHHHHHhCCCCCCCCCcCccccccc
Confidence            456899999999765    4456777 9999999999999999999999999998766544

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.13  E-value=6.3e-12  Score=106.92  Aligned_cols=52  Identities=27%  Similarity=0.599  Sum_probs=0.9

Q ss_pred             CCcccccccccccCCc---------------ceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           75 DGLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      +++.|+||++.|..+.               .+..++ |+|.||..||.+||..+.+||+||+++...
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~-C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~~  113 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEFQ  113 (117)
T ss_dssp             CC------------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCC-cCceEcHHHHHHHHHcCCcCCCCCCeeeee
Confidence            4458999999997632               222345 999999999999999999999999987543

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.11  E-value=1.4e-11  Score=100.87  Aligned_cols=54  Identities=19%  Similarity=0.639  Sum_probs=44.3

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDILL  131 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~~~  131 (381)
                      +...|+||++.|..+  +..++ |||.||..||..|+... ..||+||.++...++..
T Consensus        21 ~~~~C~IC~~~~~~p--~~~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~   75 (100)
T 3lrq_A           21 EVFRCFICMEKLRDA--RLCPH-CSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVN   75 (100)
T ss_dssp             HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred             CCCCCccCCccccCc--cccCC-CCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHh
Confidence            456899999999754  33366 99999999999999887 69999999997666543

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.11  E-value=4.1e-11  Score=90.04  Aligned_cols=55  Identities=20%  Similarity=0.501  Sum_probs=44.2

Q ss_pred             Ccccccccc-cccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846           76 GLECAVCLT-RFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        76 ~~~C~ICle-~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~  131 (381)
                      +..|+||++ .+..+... ..++ |||.||..||.+|+.. ...||+||..+...++..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~   60 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRV   60 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEE
T ss_pred             CCcCCcCCCCccCCCccCeecCC-CCCHhHHHHHHHHHHcCCCcCCCCCCcccccccee
Confidence            458999999 78777543 3466 9999999999999765 467999999998776544

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.07  E-value=3.5e-11  Score=97.70  Aligned_cols=52  Identities=27%  Similarity=0.729  Sum_probs=43.1

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDI  129 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~  129 (381)
                      +...|+||++.|.++  +..++ |||.||..||..|+..+..||+||..+...++
T Consensus        21 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~l   72 (99)
T 2y43_A           21 DLLRCGICFEYFNIA--MIIPQ-CSHNYCSLCIRKFLSYKTQCPTCCVTVTEPDL   72 (99)
T ss_dssp             HHTBCTTTCSBCSSE--EECTT-TCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGC
T ss_pred             CCCCcccCChhhCCc--CEECC-CCCHhhHHHHHHHHHCCCCCCCCCCcCChhhC
Confidence            346899999999764  32336 99999999999999999999999999876544

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.07  E-value=1.2e-10  Score=86.80  Aligned_cols=44  Identities=25%  Similarity=0.748  Sum_probs=37.0

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCcc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLC  120 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlC  120 (381)
                      ..++..|+||++.|.++   +.++ |||.||..||..|+.   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQKP---VTID-CGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCSSC---EECT-TSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhCCe---EEeC-CCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            34567899999999865   4567 999999999999998   46689998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=6e-11  Score=99.55  Aligned_cols=58  Identities=21%  Similarity=0.611  Sum_probs=47.8

Q ss_pred             CCCcccccccccccCC----cceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           74 KDGLECAVCLTRFEPT----EVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~----~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      .+...|+||++.|..+    ...+.++ |||.||..||..|+..+.+||+||..+..+++.+.
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~-CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTE-CGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEET-TSBEEEHHHHHHHHHHCSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCC-CCChhhHHHHHHHHHcCCCCCCCCCcCChhcceee
Confidence            4556899999998764    2345666 99999999999999999999999999987766543

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.04  E-value=1.5e-10  Score=92.50  Aligned_cols=50  Identities=28%  Similarity=0.584  Sum_probs=41.0

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD  125 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~  125 (381)
                      ..+.+.|+||++.|.++   +.++.|||.||..||..|+..  ...||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            34567899999999876   345559999999999999964  368999999873

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.03  E-value=1.1e-10  Score=96.27  Aligned_cols=51  Identities=25%  Similarity=0.686  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE  127 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~  127 (381)
                      .+...|+||++.|.++  +..++ |||.||..||..|+..+..||+||..+...
T Consensus        13 ~~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           13 NPHLMCVLCGGYFIDA--TTIIE-CLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             GGGTBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             CCcCCCccCChHHhCc--CEeCC-CCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3456899999999764  33347 999999999999999999999999998764

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.8e-10  Score=83.93  Aligned_cols=43  Identities=28%  Similarity=0.875  Sum_probs=36.0

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc---CCCCCCcc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD---SHSTCPLC  120 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~---~~~tCPlC  120 (381)
                      .+...|+||++.+.++   +.++ |||.||..||..|+.   .+..||+|
T Consensus        13 ~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKEP---VIIE-CGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSSC---CCCS-SCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCcc---EeCC-CCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4556899999999876   3467 999999999999954   56789998

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.01  E-value=1e-10  Score=98.77  Aligned_cols=48  Identities=23%  Similarity=0.641  Sum_probs=40.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~  126 (381)
                      +...|+||++.|.++   +.++ |||.||..||..|+..+. .||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRP---ITTV-CQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCc---EEee-CCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            446899999999865   4567 999999999999998644 89999999865

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=2.4e-10  Score=94.05  Aligned_cols=51  Identities=29%  Similarity=0.668  Sum_probs=42.3

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCccccccCCCccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRVDPEDIL  130 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~~~  130 (381)
                      ...|+||++.+..+   ..++ |||.||..||..|+..+   ..||+||..+...++.
T Consensus        21 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~   74 (112)
T 1jm7_A           21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ   74 (112)
T ss_dssp             HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred             CCCCcccChhhcCe---EECC-CCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcC
Confidence            45899999999766   3467 99999999999999875   4899999998766543

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.97  E-value=1.8e-10  Score=96.62  Aligned_cols=54  Identities=20%  Similarity=0.495  Sum_probs=44.6

Q ss_pred             CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCCcc
Q 016846           72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPEDI  129 (381)
Q Consensus        72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~~~  129 (381)
                      ...+...|+||++.+..+   +.++ |||.||..||..|+.... .||+||.++...++
T Consensus        14 ~~~~~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   68 (118)
T 3hct_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL   68 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCcCChhhcCe---EECC-cCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhc
Confidence            345567999999999766   4567 999999999999998755 99999999876544

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.97  E-value=1.5e-10  Score=102.39  Aligned_cols=50  Identities=32%  Similarity=0.727  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~  127 (381)
                      +...|+||++.|.++  +..++ |||.||..||..|+.. +..||+||..+...
T Consensus        53 ~~~~C~IC~~~~~~p--~~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLKNT--MTTKE-CLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCSSE--EEETT-TCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhhCc--CEeCC-CCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            456899999999764  44446 9999999999999987 77899999998543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.94  E-value=5.8e-10  Score=87.56  Aligned_cols=48  Identities=21%  Similarity=0.518  Sum_probs=40.3

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~  125 (381)
                      ...+|+||++.+..++..   +.|+|.||..||.+||+.+  .+||+||.++.
T Consensus        14 ~i~~C~IC~~~i~~g~~C---~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC---ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC---SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCcc---CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            446899999999866433   2599999999999999887  89999998874

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.94  E-value=4.2e-10  Score=89.80  Aligned_cols=54  Identities=15%  Similarity=0.064  Sum_probs=46.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      .+.+.|+||++.|.++   ++++ |||.|+..||..|+..+.+||+|+.++...++.+
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~p   65 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLP-SGTVMDRSIILRHLLNSPTDPFNRQMLTESMLEP   65 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCEE
T ss_pred             chheECcccCchhcCC---eECC-CCCEECHHHHHHHHhcCCCCCCCcCCCChHhcch
Confidence            4567999999999887   4677 9999999999999998899999999987665443

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.93  E-value=5.8e-10  Score=91.89  Aligned_cols=55  Identities=15%  Similarity=0.060  Sum_probs=47.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      .+.+.|+||++.|.++   ++++ |||.||..||..||..+.+||+|+.++...++.+.
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~-cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~pn   81 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLP-SGTIMDRSIILRHLLNSPTDPFNRQTLTESMLEPV   81 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEET-TTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSEEC
T ss_pred             cHhhCCcCccCcccCC---eECC-CCCEEchHHHHHHHHcCCCCCCCCCCCChhhceEC
Confidence            4567899999999887   4677 99999999999999988999999999987665443

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.93  E-value=1.7e-10  Score=95.99  Aligned_cols=48  Identities=27%  Similarity=0.740  Sum_probs=41.0

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~  125 (381)
                      .+++.|+||++.|..+   +.++ |||.||..||..|+.. +..||+||..+.
T Consensus        13 ~~~~~C~iC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           13 LSECQCGICMEILVEP---VTLP-CNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             HHHHBCTTTCSBCSSC---EECT-TSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCccCCcccCce---eEcC-CCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            3457899999999765   4567 9999999999999977 678999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.91  E-value=8.7e-10  Score=90.49  Aligned_cols=55  Identities=18%  Similarity=0.131  Sum_probs=47.0

Q ss_pred             CCCcccccccccccCCcceeecCCCC-ceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCK-HAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~Cg-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      .+.+.|+||++.|.++   ++++ || |.||..||..||..+.+||+|+.++...++.+.
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~-cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~pn   75 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLP-SSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred             cHhcCCcCccccccCC---eECC-CCCeEECHHHHHHHHHhCCCCCCCCCCCChhhceEc
Confidence            3567899999999887   4567 99 999999999999988899999999987665543

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.90  E-value=5.9e-10  Score=97.98  Aligned_cols=49  Identities=18%  Similarity=0.522  Sum_probs=41.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE  127 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  127 (381)
                      +...|+||++.|.++   +.++ |||.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQP---VTTE-CFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSE---EECT-TSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCC---EEcC-CCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            346899999999765   3477 999999999999998754 899999999765

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.87  E-value=4.7e-10  Score=93.46  Aligned_cols=50  Identities=32%  Similarity=0.683  Sum_probs=42.2

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI  129 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  129 (381)
                      ...|+||++.+.++   +.++ |||.||..||..|+.. +..||+||.++...++
T Consensus        23 ~~~C~IC~~~~~~p---~~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   73 (116)
T 1rmd_A           23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (116)
T ss_dssp             HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCcHhcCc---EEcC-CCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhc
Confidence            45899999999765   3467 9999999999999987 7789999999876553

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.86  E-value=2.1e-09  Score=84.84  Aligned_cols=56  Identities=20%  Similarity=0.440  Sum_probs=42.9

Q ss_pred             CCCCcccccccccccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846           73 HKDGLECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI  129 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  129 (381)
                      ..++..|+||++.+...+.. .-++ |||.||..|+..++.. ...||+||+++....+
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~-CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSST-TSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCccccccccccC-CCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            34567899999998654332 2244 9999999999998754 6789999999976654

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.83  E-value=8.7e-10  Score=92.33  Aligned_cols=50  Identities=26%  Similarity=0.592  Sum_probs=41.3

Q ss_pred             CCcccccccccccCCcceeec-CCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLL-PKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~l-p~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      +...|+||++.|..+   +.+ + |||.||..||..|+.  ..||+||..+...++.
T Consensus        21 ~~~~C~IC~~~~~~p---v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~~~   71 (117)
T 1jm7_B           21 KLLRCSRCTNILREP---VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK   71 (117)
T ss_dssp             HTTSCSSSCSCCSSC---BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred             hCCCCCCCChHhhCc---cEeCC-CCCHHHHHHHHHHhc--CCCcCCCCcCcccccc
Confidence            356899999999776   345 6 999999999999998  7899999998655443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.78  E-value=1.9e-09  Score=79.20  Aligned_cols=46  Identities=26%  Similarity=0.604  Sum_probs=38.6

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      .+...|+||++.|..+   +.++ |||.||..|+..|   ...||+||+.+..
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCe---EEcC-CCCcccHHHHccC---CCCCCcCCcEeec
Confidence            4567899999999876   5677 9999999999884   5689999998854

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=2.5e-09  Score=80.90  Aligned_cols=48  Identities=19%  Similarity=0.376  Sum_probs=39.4

Q ss_pred             CCcccccccccccCCccee-ecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLR-LLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~-~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ++.+|+||++.+.+.  +. .+| |||. ||..|+..|+..+..||+||.++.
T Consensus         7 ~~~~C~IC~~~~~~~--~~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG--CIVHGK-TGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE--EEEETT-EEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE--EEECCC-CCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            445899999986543  22 238 9999 899999999998899999999884

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.74  E-value=2.1e-09  Score=93.58  Aligned_cols=50  Identities=20%  Similarity=0.389  Sum_probs=41.8

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCC-CCCccccccCCC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS-TCPLCRYRVDPE  127 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~-tCPlCR~~v~~~  127 (381)
                      .+.+.|+||++.|.++   +.++ |||.||..||..|+.... .||+||.++..+
T Consensus        29 ~~~~~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           29 EAKYLCSACRNVLRRP---FQAQ-CGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             CGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             CcCcCCCCCChhhcCc---EECC-CCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            4567899999999877   3466 999999999999998654 899999987543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.74  E-value=3.4e-09  Score=106.50  Aligned_cols=49  Identities=22%  Similarity=0.727  Sum_probs=41.7

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhc-CCCCCCccccccCCCc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDPED  128 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-~~~tCPlCR~~v~~~~  128 (381)
                      ...|+||++.+..+   +.+| |||.||..|+..|+. ....||+||.++....
T Consensus       332 ~~~C~ICle~~~~p---v~lp-CGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          332 FQLCKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSBCTTTSSSBCCE---EEET-TCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCccCcCCCCe---EEeC-CCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            35899999998553   5677 999999999999998 6889999999986544

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=3.8e-09  Score=98.95  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~  131 (381)
                      .+.+.|+||++.|.+|   +++| |||.||..||..|+.. +.+||+|+.++...++.+
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~-~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~  260 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP  260 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             CcccCCcCcCCHhcCC---eECC-CCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcc
Confidence            4567899999999877   4677 9999999999999986 445999999997665543

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.72  E-value=3.4e-09  Score=85.87  Aligned_cols=55  Identities=16%  Similarity=0.500  Sum_probs=43.1

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC------CCCCc--cccc-cCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH------STCPL--CRYR-VDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~------~tCPl--CR~~-v~~~~~~~  131 (381)
                      .+.+.|+||++.|.++   +.++.|||.||..||..||..+      .+||+  |+.. +...++.+
T Consensus         5 ~~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~p   68 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQ   68 (94)
T ss_dssp             SSCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEE
T ss_pred             CcEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcC
Confidence            4567899999999876   3453499999999999999753      48999  9877 65555543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.68  E-value=5.9e-09  Score=78.55  Aligned_cols=49  Identities=16%  Similarity=0.379  Sum_probs=39.4

Q ss_pred             CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ....|+||++...+.. +..+| |||. ||..|+..|...+..||+||.++.
T Consensus         6 ~~~~C~IC~~~~~~~~-~~~~p-CgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGN-IIHGR-TGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEE-EEETT-EEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeE-EEecC-CCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3458999999865431 22348 9998 999999999988889999999884

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.66  E-value=6.8e-09  Score=91.94  Aligned_cols=54  Identities=20%  Similarity=0.491  Sum_probs=44.5

Q ss_pred             CCCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcc
Q 016846           72 GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDI  129 (381)
Q Consensus        72 ~~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~  129 (381)
                      ...+.+.|+||++.|.++   +.++ |||.||..||..|+... ..||+||..+...++
T Consensus        14 ~~~~~~~C~IC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~   68 (170)
T 3hcs_A           14 PLESKYECPICLMALREA---VQTP-CGHRFCKACIIKSIRDAGHKCPVDNEILLENQL   68 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC
T ss_pred             CCCCCCCCCCCChhhcCc---EECC-CCCHHHHHHHHHHHHhCCCCCCCCccCcchhhh
Confidence            345667999999999876   4567 99999999999999764 489999999876543

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.61  E-value=6.4e-09  Score=80.56  Aligned_cols=44  Identities=23%  Similarity=0.645  Sum_probs=36.8

Q ss_pred             CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ++..|+||++.+.++   ..+| |||. ||..|+..|    ..||+||.++..
T Consensus        23 ~~~~C~iC~~~~~~~---~~~p-CgH~~~C~~C~~~~----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           23 EEKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEAV----DKCPMCYTVITF   67 (74)
T ss_dssp             HHTBCTTTSSSBCCE---EEET-TCCBCCCHHHHTTC----SBCTTTCCBCSE
T ss_pred             cCCCCCCCCCCCCCE---EEcC-CCChhHHHHhhhcC----ccCCCcCcCccC
Confidence            345899999987553   5678 9999 999999998    789999998853

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.58  E-value=1.4e-08  Score=100.48  Aligned_cols=52  Identities=23%  Similarity=0.656  Sum_probs=39.6

Q ss_pred             CCCcccccccccccCCc----ceeecCCCCceeChhcHHHHhcCC-----------CCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTE----VLRLLPKCKHAFHVECVDTWLDSH-----------STCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~----~v~~lp~CgH~FH~~CI~~Wl~~~-----------~tCPlCR~~v~  125 (381)
                      ....+|+||++.+.+..    .+...++|+|.||..||.+||+..           ..||.||+++.
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            45568999999987622    222233699999999999999752           46999999884

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.57  E-value=9.9e-09  Score=82.65  Aligned_cols=55  Identities=18%  Similarity=0.602  Sum_probs=43.8

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCc--cccc--cCCCcc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPL--CRYR--VDPEDI  129 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPl--CR~~--v~~~~~  129 (381)
                      .+..+|+||++.+..++.+...+ |||.||..|+..++..        ...||.  |+..  +.+..+
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~l~~-CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i   69 (94)
T 1wim_A            3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEI   69 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHH
T ss_pred             CCCcCCcccCcccccccceEcCC-CCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHH
Confidence            34568999999998877766667 9999999999999863        236999  9998  655444

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.57  E-value=1.7e-08  Score=91.61  Aligned_cols=55  Identities=11%  Similarity=0.172  Sum_probs=45.3

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC-CCCCccccccCCCcccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDILL  131 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~-~tCPlCR~~v~~~~~~~  131 (381)
                      ..+.+.||||++.|.+|   +++| |||.||..||..|+..+ .+||+|+.++...++.+
T Consensus       103 ip~~f~CPI~~elm~DP---V~~~-~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~p  158 (179)
T 2f42_A          103 IPDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIP  158 (179)
T ss_dssp             CCGGGBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEE
T ss_pred             CcHhhcccCccccCCCC---eECC-CCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcc
Confidence            45678999999999876   4567 99999999999999763 47999999987665544

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.44  E-value=4.1e-08  Score=76.00  Aligned_cols=43  Identities=23%  Similarity=0.644  Sum_probs=35.3

Q ss_pred             CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      ...|+||++.+.++   ..+| |||. ||..|+..    ...||+||.++..
T Consensus        25 ~~~C~IC~~~~~~~---~~~p-CgH~~~C~~C~~~----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           25 EKLCKICMDRNIAI---VFVP-CGHLVTCKQCAEA----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHSCSSSCSSCCCB---CCSS-SCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred             CCCCCcCCCCCCCE---EEec-CCCHHHHHHHhhC----CCCCccCCceecC
Confidence            45799999997654   4677 9999 99999965    3689999998864

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.38  E-value=1.2e-07  Score=90.81  Aligned_cols=55  Identities=25%  Similarity=0.538  Sum_probs=44.1

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCc--cccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPL--CRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPl--CR~~v~~~~~~~  131 (381)
                      ...+.||||++.|.+|  |+.+. |||.||..||..|+..+  ..||+  |++.+...++.+
T Consensus       179 ~~el~CPIcl~~f~DP--Vts~~-CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~p  237 (267)
T 3htk_C          179 KIELTCPITCKPYEAP--LISRK-CNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVR  237 (267)
T ss_dssp             BCCSBCTTTSSBCSSE--EEESS-SCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEE
T ss_pred             ceeeECcCccCcccCC--eeeCC-CCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCc
Confidence            3456899999999777  33345 99999999999999864  47999  999887766544

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.38  E-value=1.5e-07  Score=70.58  Aligned_cols=48  Identities=23%  Similarity=0.611  Sum_probs=37.0

Q ss_pred             CCCcccccccccccCCcceeecCCCC--c---eeChhcHHHHhcC--CCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCK--H---AFHVECVDTWLDS--HSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~Cg--H---~FH~~CI~~Wl~~--~~tCPlCR~~v~  125 (381)
                      .+...|.||+++..  +.+ ++| |.  |   .||..||.+|+..  +.+||+|+..+.
T Consensus         4 ~~~~~CrIC~~~~~--~~l-~~P-C~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELG--NER-FRA-CGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECS--CCC-CCS-CCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCC--Cce-ecC-cCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            34568999999843  333 577 65  4   8999999999964  678999998874

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.37  E-value=8.8e-08  Score=72.06  Aligned_cols=53  Identities=17%  Similarity=0.291  Sum_probs=44.6

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      +.|+||++.+.++   ++++.|||.|...||.+|+..+.+||+++.++..+++.+.
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~   56 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEI   56 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEEC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhcEEC
Confidence            5799999999876   4552399999999999999988889999999987776543

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=2.5e-07  Score=70.78  Aligned_cols=44  Identities=34%  Similarity=0.787  Sum_probs=36.0

Q ss_pred             CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      +...|.||++...+   +..+| |||. ||..|+..    ...||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           14 NSKDCVVCQNGTVN---WVLLP-CRHTCLCDGCVKY----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSSCCSSSSSSCCC---CEETT-TTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred             CCCCCCCcCcCCCC---EEEEC-CCChhhhHHHHhc----CCCCCCCCcchhc
Confidence            45689999998643   46788 9999 99999984    4689999998854

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.30  E-value=1.1e-07  Score=74.92  Aligned_cols=43  Identities=30%  Similarity=0.712  Sum_probs=35.6

Q ss_pred             CcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      +..|+||++.+.+   +..+| |||. ||..|+..|.    .||+||.++..
T Consensus        18 ~~~C~IC~~~~~~---~v~~p-CgH~~~C~~C~~~~~----~CP~Cr~~i~~   61 (79)
T 2yho_A           18 AMLCMVCCEEEIN---STFCP-CGHTVCCESCAAQLQ----SCPVCRSRVEH   61 (79)
T ss_dssp             HTBCTTTSSSBCC---EEEET-TCBCCBCHHHHTTCS----BCTTTCCBCCE
T ss_pred             CCEeEEeCcccCc---EEEEC-CCCHHHHHHHHHhcC----cCCCCCchhhC
Confidence            3479999998654   46778 9999 9999999873    89999998854

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.22  E-value=3.5e-07  Score=90.63  Aligned_cols=43  Identities=28%  Similarity=0.768  Sum_probs=36.5

Q ss_pred             CCcccccccccccCCcceeecCCCCce-eChhcHHHHhcCCCCCCccccccC
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHA-FHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~-FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      ++..|+||++.+..+   ..+| |||. ||..|+..|    ..||+||.++.
T Consensus       294 ~~~~C~IC~~~~~~~---v~lp-CgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          294 EERTCKVCMDKEVSV---VFIP-CGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             TTCBCTTTSSSBCCE---EEET-TCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             CCCCCCccCCcCCce---EEcC-CCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            346899999998654   5678 9999 999999998    67999999885

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.81  E-value=1.1e-05  Score=66.54  Aligned_cols=46  Identities=28%  Similarity=0.575  Sum_probs=37.8

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCC
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDP  126 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~  126 (381)
                      -|.+|--++  ....+.+| |+|+||.+|+..|.++ .++||.|+.++..
T Consensus         3 fC~~C~~Pi--~iygRmIP-CkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPI--KVYGRMIP-CKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBC--SEEEEEET-TCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCe--EEEeeecc-ccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            488887666  34568899 9999999999999855 6889999998853

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.80  E-value=1.6e-05  Score=75.00  Aligned_cols=49  Identities=22%  Similarity=0.518  Sum_probs=40.1

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC--CCCCccccccCCC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH--STCPLCRYRVDPE  127 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~--~tCPlCR~~v~~~  127 (381)
                      -..|.||.+.+..+   ..+++|+|.||..|+..|++.+  ..||.|+..+..+
T Consensus       180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            45899999998866   3445699999999999999875  4899999987543

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.88  E-value=0.031  Score=44.62  Aligned_cols=35  Identities=17%  Similarity=0.419  Sum_probs=25.8

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW  110 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W  110 (381)
                      ++..|.||++.+..+....-+. |+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~-C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVT-CEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETT-TTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCc-CChHHhHHHCHHH
Confidence            3468999998753333333466 9999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=91.93  E-value=0.16  Score=38.36  Aligned_cols=46  Identities=30%  Similarity=0.482  Sum_probs=33.4

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      .+..|.||.+.   ++ +...-.|...||..|+...|..    .-.||.|....
T Consensus        11 ~~~~C~vC~~~---~~-ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~   60 (66)
T 2lri_C           11 PGARCGVCGDG---TD-VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV   60 (66)
T ss_dssp             TTCCCTTTSCC---TT-CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred             CCCCcCCCCCC---Ce-EEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence            34579999753   44 4445569999999999988765    34799997543

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=91.29  E-value=0.088  Score=39.01  Aligned_cols=49  Identities=22%  Similarity=0.477  Sum_probs=35.0

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhc-----CCCCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLD-----SHSTCPLCRY  122 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~-----~~~tCPlCR~  122 (381)
                      .+...|+||...+.+....+..-.|..-||..|+.--..     ....||.|+.
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~   57 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcC
Confidence            445679999998865544444446999999999864321     3567999965

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=87.10  E-value=0.3  Score=44.06  Aligned_cols=49  Identities=22%  Similarity=0.433  Sum_probs=35.8

Q ss_pred             cccccccccccCCcc---eeecCCCCceeChhcHHHH------hc-----CCCCCCccccccC
Q 016846           77 LECAVCLTRFEPTEV---LRLLPKCKHAFHVECVDTW------LD-----SHSTCPLCRYRVD  125 (381)
Q Consensus        77 ~~C~ICle~~~~~~~---v~~lp~CgH~FH~~CI~~W------l~-----~~~tCPlCR~~v~  125 (381)
                      ..|+||...|.+++.   .+..-.|..-||..|+.--      +.     ....||.|+..-.
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~   65 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP   65 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence            369999999987763   5555569999999998431      11     1678999987543

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=86.11  E-value=0.3  Score=37.24  Aligned_cols=51  Identities=18%  Similarity=0.376  Sum_probs=35.6

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v~  125 (381)
                      .+...|.||..... ++.++..-.|.-.||..|+..-+..    ...||.|...+.
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~   70 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK   70 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence            34456999988754 3334444469999999999765432    457999987664

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=85.53  E-value=0.58  Score=34.51  Aligned_cols=44  Identities=27%  Similarity=0.643  Sum_probs=31.7

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY  122 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~  122 (381)
                      .+..|.||...   + .+...-.|...||..|+..-+..    .-.||.|..
T Consensus        10 ~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A           10 HQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            44579999873   3 34445569999999999875543    347999965

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=84.63  E-value=0.52  Score=34.78  Aligned_cols=47  Identities=26%  Similarity=0.549  Sum_probs=32.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      ..+..|.||.+.   ++ +...-.|...||..|+..-+..    .-.||.|....
T Consensus         7 ~~~~~C~vC~~~---g~-ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCCcCCCCCCC---CC-EEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            345579999863   33 3344458899999999865543    34699997643

>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*

Probab=84.62  E-value=0.53  Score=42.63  Aligned_cols=47  Identities=32%  Similarity=0.470  Sum_probs=33.9

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      ..+..|.+|...   + .+...-.|...||..|+..-+..    .-.||.|+..-
T Consensus         5 ~~~~~C~~C~~~---g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~   55 (207)
T 3u5n_A            5 PNEDWCAVCQNG---G-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG   55 (207)
T ss_dssp             SSCSSBTTTCCC---E-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCCCCCCCCCC---C-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence            344579999854   3 35556679999999999876654    34799997643

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=84.54  E-value=0.5  Score=52.41  Aligned_cols=56  Identities=21%  Similarity=0.233  Sum_probs=46.7

Q ss_pred             CCCCcccccccccccCCcceeecCCCC-ceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCK-HAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~Cg-H~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      ..+.+.|||-++-+.+|   +++| .| +.|-..+|.+||..+.+||.=|.++...++.+.
T Consensus       888 iP~~F~cPIs~~lM~DP---Vilp-sG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~liPN  944 (968)
T 3m62_A          888 VPDEFLDPLMYTIMKDP---VILP-ASKMNIDRSTIKAHLLSDSTDPFNRMPLKLEDVTPN  944 (968)
T ss_dssp             SCGGGBCTTTCSBCSSE---EECT-TTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGGCEEC
T ss_pred             CcHHhCCcchhhHHhCC---eEcC-CCCEEECHHHHHHHHhcCCCCCCCCCCCCccccccc
Confidence            34567899999999887   5677 76 689999999999999999999999987666544

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=84.11  E-value=0.57  Score=41.57  Aligned_cols=45  Identities=33%  Similarity=0.568  Sum_probs=32.8

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      +..|.+|.+.   ++ +...-.|.-.||..|+..-+..    .-.||.|+..-
T Consensus         4 ~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            4 EDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             CSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            4579999854   44 4455569999999999876654    34699997643

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=83.53  E-value=0.94  Score=36.16  Aligned_cols=34  Identities=21%  Similarity=0.546  Sum_probs=22.3

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW  110 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W  110 (381)
                      .+..|.||-- +...+....- -|+-+||..|+.+-
T Consensus        14 ~D~~C~VC~~-~t~~~l~pCR-vC~RvfH~~CL~r~   47 (89)
T 1wil_A           14 NDEMCDVCEV-WTAESLFPCR-VCTRVFHDGCLRRM   47 (89)
T ss_dssp             CSCCCTTTCC-CCSSCCSSCS-SSSSCCCHHHHHHH
T ss_pred             CCcccCcccc-ccccceeccc-cccccccHhhcccc
Confidence            4568999952 3333222111 38999999999985

>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}

Probab=82.30  E-value=0.58  Score=34.61  Aligned_cols=51  Identities=20%  Similarity=0.563  Sum_probs=35.3

Q ss_pred             CCCcccccccccc-cCCcceeecCCCCceeChhcHHHHhc-------CCCCCCcccccc
Q 016846           74 KDGLECAVCLTRF-EPTEVLRLLPKCKHAFHVECVDTWLD-------SHSTCPLCRYRV  124 (381)
Q Consensus        74 ~~~~~C~ICle~~-~~~~~v~~lp~CgH~FH~~CI~~Wl~-------~~~tCPlCR~~v  124 (381)
                      .++..|.||.... .....+.....|.-.||..|+..-+.       ..-.||.|....
T Consensus         4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~   62 (66)
T 2yt5_A            4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT   62 (66)
T ss_dssp             CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred             CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence            3456899999764 23345556667999999999986432       245799996543

>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.88  E-value=0.49  Score=34.20  Aligned_cols=46  Identities=24%  Similarity=0.619  Sum_probs=31.7

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY  122 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~  122 (381)
                      ...+..|.||.+.   ++. ...-.|...||..|+..-|..    .-.||.|..
T Consensus         6 ~~~~~~C~vC~~~---g~l-l~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~   55 (56)
T 2yql_A            6 SGHEDFCSVCRKS---GQL-LMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD   55 (56)
T ss_dssp             CSSCCSCSSSCCS---SCC-EECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred             CCCCCCCccCCCC---CeE-EEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence            3445679999874   333 344469999999999865543    335998854

>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2

Probab=81.73  E-value=1.4  Score=33.99  Aligned_cols=49  Identities=20%  Similarity=0.383  Sum_probs=33.1

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHh-----cCCCCCCcccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCRYRV  124 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl-----~~~~tCPlCR~~v  124 (381)
                      +...| ||...+......+..-.|..-||..|+.--.     .....||.|+...
T Consensus        11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~   64 (79)
T 1wep_A           11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence            44467 9998875444444444699999999995321     1356899997654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-21
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	1e-14
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	6e-13
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	1e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-11
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	5e-11
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-10
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	2e-08
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-07
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	3e-07
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	3e-07
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-05

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 84.9 bits (210), Expect = 1e-21
 Identities = 33/51 (64%), Positives = 35/51 (68%)

Query: 74  KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV 124
            DG+ECAVCL   E  E  R LP+C H FH ECVD WL SHSTCPLCR  V
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 66.1 bits (161), Expect = 1e-14
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLSFEKNI 137
            C +CL           LP C HAF   C+  W+  + TCPLC+  V+   ++ + E + 
Sbjct: 7   RCPICLEDPS--NYSMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE--SVVHTIESDS 61

Query: 138 DSAE 141
           +  +
Sbjct: 62  EFGD 65

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 6e-13
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 77  LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHST-CPLCRYRVDPE 127
           +EC +C+   E  ++      C +     C        +  CP CR     +
Sbjct: 1   VECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.5 bits (138), Expect = 1e-11
 Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 2/57 (3%)

Query: 75  DGLECAVCLTRFE-PTEVLRLLPKCKHAFHVECVDTWLD-SHSTCPLCRYRVDPEDI 129
           D   C  C T       +  ++  C H     CVD         CP C   +   + 
Sbjct: 2   DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (138), Expect = 2e-11
 Identities = 12/53 (22%), Positives = 22/53 (41%), Gaps = 5/53 (9%)

Query: 79  CAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDIL 130
           C +C    +     ++ P C H     C+ +W +S    CP CR  +   + +
Sbjct: 26  CKICAENDKDV---KIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPI 74

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.3 bits (135), Expect = 5e-11
 Identities = 14/58 (24%), Positives = 18/58 (31%), Gaps = 14/58 (24%)

Query: 78  ECAVCLTRFEPTEVLRLLP--------------KCKHAFHVECVDTWLDSHSTCPLCR 121
            CA+C        +                    C HAFH  C+  WL +   CPL  
Sbjct: 23  NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDN 80

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 7/51 (13%)

Query: 77  LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPE 127
           L C  C    +     +LLP C H     C++        CP+C+      
Sbjct: 7   LRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLG 50

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 10/52 (19%), Positives = 14/52 (26%), Gaps = 3/52 (5%)

Query: 75  DGLECAVCLTRFEPTEVLRLLPK-CKHAFHVECVDTWLDSH--STCPLCRYR 123
           D   C +C                     H  C+ TWL     + C +C   
Sbjct: 5   DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (118), Expect = 2e-08
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 7/63 (11%)

Query: 70  LRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS---TCPLCRYRVDP 126
           +   +  LEC +CL   +         KC H F   C+   L+       CPLC+  +  
Sbjct: 15  INAMQKILECPICLELIKEPVST----KCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70

Query: 127 EDI 129
             +
Sbjct: 71  RSL 73

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 5/54 (9%)

Query: 77  LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH-STCPLCRYRVDPEDI 129
           + C +C               CKH F   C+   L    S CP CRY   P D+
Sbjct: 24  ISCQICEHILADPVETS----CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL 73

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 5/49 (10%)

Query: 78  ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWL-----DSHSTCPLCR 121
              +  ++     V+  L KC HAFH+ C+         D    CP C+
Sbjct: 41  YSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.8 bits (108), Expect = 3e-07
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 72  GHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHS--------TCPLCRYR 123
           G      C +CL  +   ++  +   C+  F   C+  +++           +CP     
Sbjct: 1   GSSGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59

Query: 124 ----VDPEDI 129
               +   +I
Sbjct: 60  KQGHLQENEI 69

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 3e-07
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 69  ALRGHKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED 128
           AL   +  L C+ C         L     C+H F   CV   +   + CP+C      +D
Sbjct: 15  ALDRLEKLLRCSRCTNILREPVCL---GGCEHIFCSNCVSDCI--GTGCPVCYTPAWIQD 69

Query: 129 I 129
           +
Sbjct: 70  L 70

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 3/54 (5%)

Query: 77  LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL 130
           + CA+     +      L PK +  F    ++ ++      P+    +  E+I+
Sbjct: 1   MLCAISG---KVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIV 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.58
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.35
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.34
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.29
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.24
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.24
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.22
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.2
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.08
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.07
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.06
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.97
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.92
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.9
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.88
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.82
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.41
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	93.02
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	89.24
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	88.08
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	86.22
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	82.69
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	82.45
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	81.92
d1wewa_	78	Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop	80.35

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.58  E-value=4.2e-16  Score=114.01  Aligned_cols=51  Identities=65%  Similarity=1.322  Sum_probs=46.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCcccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRV  124 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v  124 (381)
                      +++.+|+||+++|..++.+..++.|+|.||..||.+|++.+.+||+||+++
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEe
Confidence            345689999999999988888877999999999999999999999999876

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.35  E-value=2.2e-13  Score=102.92  Aligned_cols=47  Identities=36%  Similarity=0.890  Sum_probs=41.0

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccC
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVD  125 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~  125 (381)
                      .++|+||++.|.++  ++.+| |||.||..||.+|++.+.+||+||.++.
T Consensus         5 ~d~C~IC~~~~~~~--~~~~~-C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           5 AERCPICLEDPSNY--SMALP-CLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCSSCCSCCCSC--EEETT-TTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCccCCcCccCC--cEEeC-CCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            34799999999653  56677 9999999999999999999999999874

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-13  Score=99.10  Aligned_cols=49  Identities=20%  Similarity=0.461  Sum_probs=40.9

Q ss_pred             cccccccccccCCcce-eecCCCCceeChhcHHHHhcC-CCCCCccccccCC
Q 016846           77 LECAVCLTRFEPTEVL-RLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDP  126 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v-~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~  126 (381)
                      .+|+||+++|..++.. ..++ |||.||..|+.+|++. +..||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~-CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCT-CGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSS-SSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecC-CCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            3799999999877654 4455 9999999999999986 4579999999864

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.6e-13  Score=105.49  Aligned_cols=51  Identities=27%  Similarity=0.599  Sum_probs=42.5

Q ss_pred             CCcccccccccccCCc---------------ceeecCCCCceeChhcHHHHhcCCCCCCccccccCC
Q 016846           75 DGLECAVCLTRFEPTE---------------VLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDP  126 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~---------------~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~  126 (381)
                      .++.|+||++.+....               .+..++ |+|.||..||.+||+.+.+||+||+++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGV-CNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEET-TSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEcc-ccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            3457999999886643               245676 99999999999999999999999998853

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.7e-12  Score=97.27  Aligned_cols=54  Identities=24%  Similarity=0.471  Sum_probs=41.9

Q ss_pred             CCcccccccccccCC-c-ceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846           75 DGLECAVCLTRFEPT-E-VLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI  129 (381)
Q Consensus        75 ~~~~C~ICle~~~~~-~-~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  129 (381)
                      ++..|+||++.+..+ + .+.+++ |||.||..||..|+.. +..||+||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~-C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNV-CGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECT-TCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCc-cChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            356899999986433 3 334556 9999999999999965 5679999999866554

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.24  E-value=1.4e-12  Score=107.06  Aligned_cols=50  Identities=28%  Similarity=0.642  Sum_probs=39.3

Q ss_pred             CcccccccccccCC---------------cceeecCCCCceeChhcHHHHhcC-----CCCCCccccccCC
Q 016846           76 GLECAVCLTRFEPT---------------EVLRLLPKCKHAFHVECVDTWLDS-----HSTCPLCRYRVDP  126 (381)
Q Consensus        76 ~~~C~ICle~~~~~---------------~~v~~lp~CgH~FH~~CI~~Wl~~-----~~tCPlCR~~v~~  126 (381)
                      +..|+||++.|..+               ..+.+++ |+|.||..||..||..     +.+||+||..+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~-CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTK-CSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESS-SCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECC-CCChhhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            44799999998543               2345666 9999999999999974     3479999987743

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.22  E-value=1.1e-12  Score=95.54  Aligned_cols=51  Identities=18%  Similarity=0.296  Sum_probs=44.4

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCcccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~  131 (381)
                      .|+||++.++++   +++++|||.||..||.+||+.+.+||+||.++..+++.+
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dLip   52 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVE   52 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGCEE
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhcee
Confidence            699999999766   345569999999999999999999999999998877654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=4.6e-12  Score=98.39  Aligned_cols=48  Identities=25%  Similarity=0.805  Sum_probs=40.6

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPED  128 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~  128 (381)
                      ..|+||++.+.+   .+++| |||.||..||..||.. +.+||+||..+...+
T Consensus        24 ~~C~IC~~~~~~---~~~~~-CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKD---VKIEP-CGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCC---EECSS-SCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCC---eEEeC-CCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            469999998865   46787 9999999999999975 568999999997544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.3e-11  Score=98.38  Aligned_cols=51  Identities=29%  Similarity=0.668  Sum_probs=42.1

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCC---CCCCccccccCCCccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSH---STCPLCRYRVDPEDIL  130 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~---~tCPlCR~~v~~~~~~  130 (381)
                      .+.|+||++.|.++   +.++ |||.||..||..|+...   ..||+||.++...++.
T Consensus        21 ~l~CpIC~~~~~~p---v~~~-CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~   74 (103)
T d1jm7a_          21 ILECPICLELIKEP---VSTK-CDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQ   74 (103)
T ss_dssp             HTSCSSSCCCCSSC---CBCT-TSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCB
T ss_pred             CcCCCccCchhCCe---EEcC-CCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCC
Confidence            45799999999876   3467 99999999999999764   4799999998766543

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.07  E-value=2.3e-11  Score=96.22  Aligned_cols=50  Identities=32%  Similarity=0.683  Sum_probs=41.6

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDI  129 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~  129 (381)
                      ...|+||++.+.++   ++++ |||.||..||.+|++. +..||+||.++.+.++
T Consensus        23 ~l~C~IC~~~~~~p---v~~~-CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l   73 (86)
T d1rmda2          23 SISCQICEHILADP---VETS-CKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (86)
T ss_dssp             HTBCTTTCSBCSSE---EECT-TSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CcCCccCCcchhcc---eecC-CCChhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence            35799999998765   5677 9999999999999975 5689999998866553

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.7e-11  Score=89.44  Aligned_cols=47  Identities=26%  Similarity=0.607  Sum_probs=39.0

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPED  128 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~  128 (381)
                      +.++|+||++.|.++   +.+| |||.||..||.+|   +..||+||.++....
T Consensus         5 ~~l~C~IC~~~~~~p---~~lp-CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLP-CLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCST-TSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCCCcccCcccCCC---EEec-CCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            456899999999776   5677 9999999999876   668999999986543

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=7.2e-11  Score=94.37  Aligned_cols=50  Identities=26%  Similarity=0.580  Sum_probs=40.5

Q ss_pred             CcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccc
Q 016846           76 GLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDIL  130 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~  130 (381)
                      .+.|+||++.|.++  +...+ |||.||..||..|+.  ..||+||.++...++.
T Consensus        22 ~l~C~IC~~~~~~p--v~~~~-CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~~l~   71 (97)
T d1jm7b_          22 LLRCSRCTNILREP--VCLGG-CEHIFCSNCVSDCIG--TGCPVCYTPAWIQDLK   71 (97)
T ss_dssp             TTSCSSSCSCCSSC--BCCCS-SSCCBCTTTGGGGTT--TBCSSSCCBCSCSSCC
T ss_pred             cCCCccCCchhhcC--ceeCC-CCCchhHHHHHHHHh--ccccccCCcCchhhCc
Confidence            45899999999876  33345 999999999999985  3599999988766654

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.92  E-value=4e-10  Score=86.49  Aligned_cols=54  Identities=17%  Similarity=0.463  Sum_probs=45.4

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~  131 (381)
                      .+++.|+||++.|.++   ++++ |||.||..||..|+.. ...||.|+.++...++.+
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~-cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~p   60 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVS-TGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTP   60 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEET-TTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEE
T ss_pred             CccCCCcCcCchhhCc---eEcc-CCCcchHHHHHHHHHHCCCCCCcccccCCcccccc
Confidence            3567999999999877   4567 9999999999999987 457999999998766544

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.90  E-value=3.4e-10  Score=87.34  Aligned_cols=54  Identities=13%  Similarity=0.207  Sum_probs=44.7

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC-CCCCCccccccCCCcccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS-HSTCPLCRYRVDPEDILL  131 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~-~~tCPlCR~~v~~~~~~~  131 (381)
                      .+++.|+||++.|.++   +.++ |||.||..||..|+.. +.+||+|+.++...++.+
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~-cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~p   59 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITP-SGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIP   59 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECS-SCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEE
T ss_pred             CccccCcCcCchhhhh---cccC-CcCeecHHHHHHHHhcCCccCCCcccccccccccc
Confidence            3567899999999877   3577 9999999999999975 568999999987665543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.88  E-value=4.3e-10  Score=82.32  Aligned_cols=52  Identities=19%  Similarity=0.431  Sum_probs=38.1

Q ss_pred             CCCcccccccccccCCccee-ecCCCCceeChhcHHHHhcC--CCCCCccccccC
Q 016846           74 KDGLECAVCLTRFEPTEVLR-LLPKCKHAFHVECVDTWLDS--HSTCPLCRYRVD  125 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~-~lp~CgH~FH~~CI~~Wl~~--~~tCPlCR~~v~  125 (381)
                      ++...|.||++.+..+.... ....|+|.||..||.+|+..  +.+||+||+++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            45568999999986553221 11124699999999999954  568999999875

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.4e-09  Score=87.49  Aligned_cols=55  Identities=18%  Similarity=0.164  Sum_probs=46.3

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHHhcCCCCCCccccccCCCccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDSHSTCPLCRYRVDPEDILLS  132 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~~~tCPlCR~~v~~~~~~~~  132 (381)
                      +++.|+||++.|.++   ++++.|+|.|+..||..||..+.+||+|+.++...++.+.
T Consensus        21 ~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L~pN   75 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIRPN   75 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSEEC
T ss_pred             HHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccchhhcch
Confidence            467999999999887   4677345689999999999999999999999987776543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=3.7e-08  Score=77.41  Aligned_cols=47  Identities=17%  Similarity=0.563  Sum_probs=37.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC--------CCCCCccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS--------HSTCPLCR  121 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~--------~~tCPlCR  121 (381)
                      ....+|+||++++...+.+..++ |+|.||..|+..|+..        .-.||.|.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~-C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           3 SGSSGCKLCLGEYPVEQMTTIAQ-CQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             CSBCCCSSSCCCCBGGGEEEETT-TTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCCcCccCCCcccCCceEEECC-CCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            34568999999997777666666 9999999999999853        12599864

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.02  E-value=0.021  Score=40.70  Aligned_cols=49  Identities=22%  Similarity=0.531  Sum_probs=36.0

Q ss_pred             CCcccccccccccCCcceeecCCCCceeChhcHHHH---hc--CCCCCCccccc
Q 016846           75 DGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW---LD--SHSTCPLCRYR  123 (381)
Q Consensus        75 ~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W---l~--~~~tCPlCR~~  123 (381)
                      ....|.||...+...+.++..-.|+..||..|+..-   ..  .+..||.|+..
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~   58 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCc
Confidence            345899999988776665566679999999999632   11  25689999753

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.24  E-value=0.1  Score=35.28  Aligned_cols=44  Identities=34%  Similarity=0.679  Sum_probs=31.9

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRY  122 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~  122 (381)
                      .|.||...-... .++..-.|...||..|+..-+..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            588997765443 44455569999999999887654    336999974

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.1  Score=36.75  Aligned_cols=47  Identities=26%  Similarity=0.549  Sum_probs=32.2

Q ss_pred             CCCcccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           74 KDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        74 ~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      .....|.||.+.   ++ ++..-.|.-.||..|+...+..    .-.||.|+...
T Consensus         7 ~~~~~C~~C~~~---g~-lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           7 HHMEFCRVCKDG---GE-LLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SSCSSCTTTCCC---SS-CBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCcCCCcCCCCC---Ce-EEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            344579999753   33 3444469999999999866543    44799997543

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.22  E-value=0.41  Score=35.17  Aligned_cols=46  Identities=22%  Similarity=0.445  Sum_probs=32.1

Q ss_pred             ccccccccccCCcceeecCCCCceeChhcHHH--H-hc--CCCCCCcccccc
Q 016846           78 ECAVCLTRFEPTEVLRLLPKCKHAFHVECVDT--W-LD--SHSTCPLCRYRV  124 (381)
Q Consensus        78 ~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~--W-l~--~~~tCPlCR~~v  124 (381)
                      -| ||...+......+..-.|.--||..|+..  . ..  .+..||.|+...
T Consensus        14 ~C-iC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          14 YC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             CS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred             Ee-ECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCc
Confidence            45 99987765555555667999999999942  1 12  246899997644

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.69  E-value=0.45  Score=34.17  Aligned_cols=44  Identities=27%  Similarity=0.640  Sum_probs=30.6

Q ss_pred             cccccccccccCCcceeecCCCCceeChhcHHHHhcC----CCCCCcccccc
Q 016846           77 LECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTWLDS----HSTCPLCRYRV  124 (381)
Q Consensus        77 ~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~Wl~~----~~tCPlCR~~v  124 (381)
                      ..|.||.+.   ++ +...-.|...||..|+...+..    .-.||.|+..-
T Consensus         8 ~~C~~C~~~---~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   55 (70)
T d1fp0a1           8 TICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   55 (70)
T ss_dssp             SCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCCCCCc---CE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcC
Confidence            357777643   44 4455569999999999987654    33699996543

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.45  E-value=0.22  Score=37.19  Aligned_cols=49  Identities=22%  Similarity=0.497  Sum_probs=33.0

Q ss_pred             CcccccccccccC-CcceeecCCCCceeChhcHHHHhc--------CCCCCCcccccc
Q 016846           76 GLECAVCLTRFEP-TEVLRLLPKCKHAFHVECVDTWLD--------SHSTCPLCRYRV  124 (381)
Q Consensus        76 ~~~C~ICle~~~~-~~~v~~lp~CgH~FH~~CI~~Wl~--------~~~tCPlCR~~v  124 (381)
                      ...|.||...... ...++..-.|...||..|+...+.        ....||.|....
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~   73 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM   73 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchH
Confidence            3469999875432 334555556999999999874431        145799996544

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.92  E-value=0.43  Score=36.05  Aligned_cols=36  Identities=19%  Similarity=0.500  Sum_probs=25.4

Q ss_pred             CCCCcccccccccccCCcceeecCCCCceeChhcHHHH
Q 016846           73 HKDGLECAVCLTRFEPTEVLRLLPKCKHAFHVECVDTW  110 (381)
Q Consensus        73 ~~~~~~C~ICle~~~~~~~v~~lp~CgH~FH~~CI~~W  110 (381)
                      ...+..|.|| +.+...+..- ..-|+-+||..|+.+-
T Consensus        12 v~~D~mC~vC-~v~t~~~l~p-CRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAESLFP-CRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSSCCSS-CSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Ccccccceec-ceeecchhhHHHHHHh
Confidence            3455689999 6666554432 2238899999999986

>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Sumoylation ligase E3, SIZ1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.35  E-value=0.34  Score=35.46  Aligned_cols=48  Identities=27%  Similarity=0.576  Sum_probs=31.1

Q ss_pred             CcccccccccccCCcceeec-CCCCceeChhcHHH----H--hc---CCCCCCcccccc
Q 016846           76 GLECAVCLTRFEPTEVLRLL-PKCKHAFHVECVDT----W--LD---SHSTCPLCRYRV  124 (381)
Q Consensus        76 ~~~C~ICle~~~~~~~v~~l-p~CgH~FH~~CI~~----W--l~---~~~tCPlCR~~v  124 (381)
                      ...| ||......+..+..- ..|..-||..|+.-    .  ..   ....||.|+..-
T Consensus        16 ~~~C-~C~~~~~~~~~i~c~c~~C~~W~H~~Cvgi~~~~~~~~~~~~~~~~C~~C~~~~   73 (78)
T d1wewa_          16 KVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS   73 (78)
T ss_dssp             CCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred             ccEe-ECCCccCCCcEEEEeCCCCCcCCCccccCccccccccccCCCCEEECCCCcCcC
Confidence            3568 899887655444332 24999999999832    1  01   146899997644