Citrus Sinensis ID: 016856

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MMSPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
ccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccEEEcc
ccccccccHHHHHcccccccccccccccccEEEEEEEEcccccccccEEEEEEEcccccHHcccHHHHHHHHHHHHHHHcccHHcHHHHHHHHHHHHHHHHHcccccHHHHHcccEEEccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHcHHHHHHHHHHHHcccEccccccccEccccccccccccccccccccEcccccccccccccccHHccccccccHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccEEEEc
mmspnrwdplsrslsrplhlsnsldntdipsvsvdvticqpqqdphslrievrnsasgsapslsQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEegeesqymtdfsgrvfrsptlFEDMVKCMllcncqwprTLSMARALCELQWElqhcspsisedfipqtpagkeskrrQKVSKVASKLTSRiaeskasseDYMNLKLDCagvleenvqpsfpqndiesdlhglnelsttdppsardrignfpsprelanLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSqingfgpftrnnVLVCIGFyhviptdseTIRHLKQVHARNCTSKTVQMIAESiygkyapfqflay
mmspnrwdplsrslSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSAsgsapslsqEQQDALLAQVKRMLRlseadernvrdfKRIVRQVaqeegeesqymtdfsgrVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFipqtpagkeskrrqkvskvaskltsriaeskassedYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
MMSPNRWDplsrslsrplhlsnslDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
***********************************V**********************************************************I*************YMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSP*********************************************LKLDCAGVL**********************************************LDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFL**
**SPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTI****************SA*************ALLAQVKRMLRLSEADERNVRDFKRIVR**********QYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCS*SISEDF***T****************SKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSF*************ELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
**************SRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVR*************QQDALLAQVKRMLRLSEADERNVRDFKRIVRQVA*********MTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQT*****************************SEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
****NRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCS******FIPQTPAGK*S******SKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSF**NDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
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MMSPNRWDPLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224073560445 predicted protein [Populus trichocarpa] 0.960 0.822 0.529 1e-107
255556701458 conserved hypothetical protein [Ricinus 0.934 0.777 0.518 1e-101
356532390426 PREDICTED: uncharacterized protein LOC10 0.908 0.812 0.498 2e-92
218200178463 hypothetical protein OsI_27177 [Oryza sa 0.944 0.777 0.476 1e-81
222637605442 hypothetical protein OsJ_25428 [Oryza sa 0.916 0.789 0.471 4e-75
22775617 501 hypothetical protein [Oryza sativa Japon 0.937 0.712 0.432 3e-73
297607746465 Os07g0657600 [Oryza sativa Japonica Grou 0.863 0.707 0.418 3e-63
296088032257 unnamed protein product [Vitis vinifera] 0.674 1.0 0.326 1e-39
255546670457 conserved hypothetical protein [Ricinus 0.509 0.424 0.345 1e-28
320165998 507 hypothetical protein CAOG_08029 [Capsasp 0.774 0.581 0.271 1e-22
>gi|224073560|ref|XP_002304112.1| predicted protein [Populus trichocarpa] gi|222841544|gb|EEE79091.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 221/417 (52%), Positives = 270/417 (64%), Gaps = 51/417 (12%)

Query: 1   MMSPNRWDPLSRSLSRPLHLSNSLDNTDI--PSVSVDVTICQPQQDPHSLRIEVRNSASG 58
           MMSPN WDPLS + SRPL LS S  +  +  P+ S+ V+I  P   P SL + V  +   
Sbjct: 43  MMSPNHWDPLSLTFSRPLRLSLSDSDPQVSTPTTSLFVSISHPPHLPRSLSVRVYGTRC- 101

Query: 59  SAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFSGRVF 118
               LS + Q++L+AQV RMLRLSE DERN R+F++I    A EE   + ++T F GRVF
Sbjct: 102 ----LSPKHQESLVAQVVRMLRLSETDERNAREFRKIAEAAAAEEN--NSWLTGFGGRVF 155

Query: 119 RSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSI---------------- 162
           RSPTLFEDMVKC+LLCNCQWPRTLSMARALCELQ ELQ  S  +                
Sbjct: 156 RSPTLFEDMVKCILLCNCQWPRTLSMARALCELQCELQCKSSGVFVAQAVNATVKNKCND 215

Query: 163 -SEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQP- 220
            + +FIP T AGKESKR  + SKV   L S+I E++   E   NLK D A +  E ++  
Sbjct: 216 TAHNFIPNTSAGKESKRNIRASKVTKNLASKIVETETLLEADANLKTDSAHIGRETLESV 275

Query: 221 ---------------SFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESF 265
                          S+  + ++S  HG+        P     I NFPSPRELANLDESF
Sbjct: 276 ENDSCARCSSRHGSDSWAPDSLQSQ-HGIQ-------PGVNKMICNFPSPRELANLDESF 327

Query: 266 LAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMC-NEASLTAYVKLAEQLSQINGFGPF 324
           LAKRCNLGYRA RI+KLA+ IV+G+I LRE+E+ C N AS + Y KLA+Q  QI+GFGPF
Sbjct: 328 LAKRCNLGYRAIRIIKLAQSIVEGRIPLREVEEDCANGASSSCYNKLADQFRQIDGFGPF 387

Query: 325 TRNNVLVCIGFYHVIPTDSETIRHLKQVHARNCTSKTVQMIAESIYGKYAPFQFLAY 381
           T  NVL+C+GFYH+IPTDSET+RHLKQVHA+  T +TVQ   E IYGKYAPFQFLAY
Sbjct: 388 TCANVLMCMGFYHIIPTDSETVRHLKQVHAKKSTIQTVQRDVEEIYGKYAPFQFLAY 444

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255556701|ref|XP_002519384.1| conserved hypothetical protein [Ricinus communis] gi|223541451|gb|EEF43001.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|356532390|ref|XP_003534756.1| PREDICTED: uncharacterized protein LOC100781827 [Glycine max] Back     alignment and taxonomy information
>gi|218200178|gb|EEC82605.1| hypothetical protein OsI_27177 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|222637605|gb|EEE67737.1| hypothetical protein OsJ_25428 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|22775617|dbj|BAC15471.1| hypothetical protein [Oryza sativa Japonica Group] gi|50510134|dbj|BAD31099.1| hypothetical protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297607746|ref|NP_001060514.2| Os07g0657600 [Oryza sativa Japonica Group] gi|255678034|dbj|BAF22428.2| Os07g0657600, partial [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|296088032|emb|CBI35315.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255546670|ref|XP_002514394.1| conserved hypothetical protein [Ricinus communis] gi|223546491|gb|EEF47990.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|320165998|gb|EFW42897.1| hypothetical protein CAOG_08029 [Capsaspora owczarzaki ATCC 30864] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.20.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
COG0122285 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-o 5e-11
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 4e-04
>gnl|CDD|223200 COG0122, AlkA, 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score = 62.5 bits (152), Expect = 5e-11
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 252 FPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKL 311
           FP+P +LA  DE  L +    G +A  I+ LAR   +G++ L EL+ + +E         
Sbjct: 144 FPTPEQLAAADEEALRRCGLSGRKAEYIISLARAAAEGELDLSELKPLSDEE-------A 196

Query: 312 AEQLSQINGFGPFTRNNVLV-CIGFYHVIPTDSETIRH-LKQVHA--RNCTSKTVQMIAE 367
            E+L+ + G GP+T    L+  +G   V P D   +R  +K+++      T K V+ +AE
Sbjct: 197 IEELTALKGIGPWTAEMFLLFGLGRPDVFPADDLGLRRAIKKLYRLPTRPTEKEVRELAE 256

Query: 368 SIYGKYA 374
             +G Y 
Sbjct: 257 R-WGPYR 262

Length = 285
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 100.0
KOG2875323 consensus 8-oxoguanine DNA glycosylase [Replicatio 100.0
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 100.0
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 100.0
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.91
TIGR01083191 nth endonuclease III. This equivalog model identif 99.88
KOG1918254 consensus 3-methyladenine DNA glycosidase [Replica 99.87
PRK10702211 endonuclease III; Provisional 99.87
PRK13913218 3-methyladenine DNA glycosylase; Provisional 99.86
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 99.83
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.82
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 99.82
PRK10880 350 adenine DNA glycosylase; Provisional 99.78
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.73
PRK13910 289 DNA glycosylase MutY; Provisional 99.66
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.54
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.53
COG2231215 Uncharacterized protein related to Endonuclease II 99.39
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 99.29
KOG1921286 consensus Endonuclease III [Replication, recombina 99.17
PF07934117 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal do 98.43
PF06029116 AlkA_N: AlkA N-terminal domain; InterPro: IPR01031 98.05
KOG2457 555 consensus A/G-specific adenine DNA glycosylase [Re 97.91
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 97.55
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 97.32
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 94.05
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 93.11
smart00483 334 POLXc DNA polymerase X family. includes vertebrate 91.9
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 90.53
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 89.89
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 89.34
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 89.27
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 87.69
TIGR00084191 ruvA Holliday junction DNA helicase, RuvA subunit. 86.84
PRK00076 196 recR recombination protein RecR; Reviewed 86.43
TIGR00615 195 recR recombination protein RecR. This family is ba 86.36
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 86.33
COG0353 198 RecR Recombinational DNA repair protein (RecF path 86.18
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 85.57
PRK13844 200 recombination protein RecR; Provisional 85.54
PF0237187 Transposase_20: Transposase IS116/IS110/IS902 fami 84.56
PRK14600186 ruvA Holliday junction DNA helicase RuvA; Provisio 84.49
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 84.02
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 83.98
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 82.83
PRK14605194 ruvA Holliday junction DNA helicase RuvA; Provisio 80.82
PRK00116192 ruvA Holliday junction DNA helicase RuvA; Reviewed 80.3
PRK08609 570 hypothetical protein; Provisional 80.06
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information 
Probab=100.00  E-value=6.6e-44  Score=350.92  Aligned_cols=254  Identities=21%  Similarity=0.274  Sum_probs=197.2

Q ss_pred             ccc--cCCCccccceecCCCCCCCCCCCceeEEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCc
Q 016856            6 RWD--PLSRSLSRPLHLSNSLDNTDIPSVSVDVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSE   83 (381)
Q Consensus         6 ~w~--~~~~~~~r~lrl~~~~~~~~~~~~~~~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~   83 (381)
                      +|.  ...+.|.|++.+++.         + .+.+.|.   ++.+.+.+...      ..  .+.+.+.++|++||+||.
T Consensus        28 rw~~~~~~~~y~~~~~~~~~---------~-~~~~~q~---~~~~~~~~~~~------~~--~~~~~~~~~ir~~f~Ld~   86 (310)
T TIGR00588        28 RWRWEESPAHWSGLLVIADQ---------P-VWTLTQT---EEQLLCTVYRG------DK--PTQDELETKLEKYFQLDV   86 (310)
T ss_pred             cCceeCCCCeEEEEEEECCe---------e-EEEEEEc---CCceEEEEecC------CC--ccHHHHHHHHHHHhcCCC
Confidence            564  555789999999875         4 3445565   33454444432      11  245678899999999999


Q ss_pred             cchHhHHHHHHHh-HHHHhhhccccccccCCcccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCC
Q 016856           84 ADERNVRDFKRIV-RQVAQEEGEESQYMTDFSGRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSI  162 (381)
Q Consensus        84 d~~~~~~~f~~~~-~~~~~~~~~~~~~~~~~ggRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~  162 (381)
                      |    +.++++.. ..++.+.....+   ..|.|++++ |+||++|++|||||+|++++.+|.++||+.||+        
T Consensus        87 d----~~~i~~~~~~~D~~l~~~~~~---~~GlRi~~~-d~fE~lv~~IlsQq~si~~a~~~~~rL~~~~G~--------  150 (310)
T TIGR00588        87 S----LAQLYTHWGSVDKHFQYVAQK---FQGVRLLRQ-DPFECLISFICSSNNNIARITRMVERLCQAFGP--------  150 (310)
T ss_pred             C----HHHHHHHHhhcCHHHHHHHHh---CCCCCCCCC-CHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhCC--------
Confidence            9    66665542 223333211111   236699999 999999999999999999999999999999986        


Q ss_pred             CCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCC
Q 016856          163 SEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDP  242 (381)
Q Consensus       163 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (381)
                              ++.                                                        .++|         
T Consensus       151 --------~~~--------------------------------------------------------~~~g---------  157 (310)
T TIGR00588       151 --------RLI--------------------------------------------------------TLDG---------  157 (310)
T ss_pred             --------Ccc--------------------------------------------------------cCCC---------
Confidence                    221                                                        1222         


Q ss_pred             CCccccccCCCCHHHHhcCCH-HHHHHhCcCcHHHHHHHHHHHHHHhCCC---ChhHHHhhhhhcccCcHHHHHHHHhcC
Q 016856          243 PSARDRIGNFPSPRELANLDE-SFLAKRCNLGYRAGRILKLARGIVDGQI---QLRELEDMCNEASLTAYVKLAEQLSQI  318 (381)
Q Consensus       243 p~~~~~~~~FPTpe~La~~~~-e~Lr~~~g~GyRAkyI~~lA~~i~~G~l---~Le~L~~l~~~~~~~~~ee~~~~Ll~L  318 (381)
                          ..++.||||++|+..+. +.|+. +|+||||+||+++|+++.+|..   +++.|..+       ++++++++|++|
T Consensus       158 ----~~~~~FPtp~~La~~~~e~~Lr~-~G~g~Ra~~I~~~A~~i~~~~~~~~~l~~l~~~-------~~~~~~~~L~~l  225 (310)
T TIGR00588       158 ----VTYHGFPSLHALTGPEAEAHLRK-LGLGYRARYIRETARALLEEQGGRAWLQQIRGA-------SYEDAREALCEL  225 (310)
T ss_pred             ----cccccCCCHHHHhCCChHHHHHH-cCCHHHHHHHHHHHHHHHhccCCchhHHhhccC-------ChHHHHHHHHhC
Confidence                25789999999998765 57887 9999999999999999998754   45566665       899999999999


Q ss_pred             CccChHHHHHHH-HHhCCCCccccchHHHHHHHHhhccC-----------CChHHHHHHHHHHhccCCCc--ccccC
Q 016856          319 NGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARN-----------CTSKTVQMIAESIYGKYAPF--QFLAY  381 (381)
Q Consensus       319 ~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~-----------~s~k~i~~~~~~~~g~~aGw--q~Lfy  381 (381)
                      ||||||||+||| |+|+++|+||+|+||+|+++++|+..           .+++++++++++.|++|+||  +||||
T Consensus       226 ~GIG~~tAd~vll~~l~~~d~~PvD~~v~r~~~r~y~~~~~~~~~~~~~~~~~~~i~~~~~~~~g~~ag~aq~~lf~  302 (310)
T TIGR00588       226 PGVGPKVADCICLMGLDKPQAVPVDVHVWRIANRDYPWHPKTSRAKGPSPFARKELGNFFRSLWGPYAGWAQAVLFS  302 (310)
T ss_pred             CCccHHHHHHHHHHhCCCCCceeecHHHHHHHHHHhcccccccccccCChhHHHHHHHHHHHHhcCcchHHHHHHHH
Confidence            999999999995 89999999999999999999998742           23467788899999999999  89986

All proteins in this family for which functions are known are 8-oxo-guanaine DNA glycosylases that function in base excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is distantly realted to the Nth-MutY superfamily.
>KOG2875 consensus 8-oxoguanine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>KOG1918 consensus 3-methyladenine DNA glycosidase [Replication, recombination and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG1921 consensus Endonuclease III [Replication, recombination and repair] Back     alignment and domain information
>PF07934 OGG_N: 8-oxoguanine DNA glycosylase, N-terminal domain; InterPro: IPR012904 The presence of 8-oxoguanine residues in DNA can give rise to G-C to T-A transversion mutations Back     alignment and domain information
>PF06029 AlkA_N: AlkA N-terminal domain; InterPro: IPR010316 This domain is found at the N terminus of bacterial AlkA 3 Back     alignment and domain information
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair] Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>smart00483 POLXc DNA polymerase X family Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00084 ruvA Holliday junction DNA helicase, RuvA subunit Back     alignment and domain information
>PRK00076 recR recombination protein RecR; Reviewed Back     alignment and domain information
>TIGR00615 recR recombination protein RecR Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PRK13844 recombination protein RecR; Provisional Back     alignment and domain information
>PF02371 Transposase_20: Transposase IS116/IS110/IS902 family; InterPro: IPR003346 Transposases are needed for efficient transposition of the insertion sequence or transposon DNA Back     alignment and domain information
>PRK14600 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14605 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed Back     alignment and domain information
>PRK08609 hypothetical protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 5e-14
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 6e-14
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 7e-05
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 8e-05
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 3e-04
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 4e-04
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Length = 360 Back     alignment and structure
 Score = 71.7 bits (175), Expect = 5e-14
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 16/135 (11%)

Query: 252 FPSPRELANLDESFLAKRCNLGYRAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKL 311
           FPS + LA  +     ++  LGYRA  +   AR I++ Q  L  L+ +       +Y + 
Sbjct: 196 FPSLQALAGPEVEAHLRKLGLGYRARYVSASARAILEEQGGLAWLQQLRES----SYEEA 251

Query: 312 AEQLSQINGFGPFTRNNV-LVCIGFYHVIPTDSETIRHLKQVHARNC-----------TS 359
            + L  + G G    + + L+ +     +P +       ++ ++ +            T+
Sbjct: 252 HKALCILPGVGTCVADKICLMALDKPQAVPVNVHMWHIAQRDYSWHPTTSQAKGPSPQTN 311

Query: 360 KTVQMIAESIYGKYA 374
           K +     S++G YA
Sbjct: 312 KELGNFFRSLWGPYA 326
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Length = 290 Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Length = 233 Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Length = 282 Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Length = 295 Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Length = 225 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 100.0
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 100.0
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 100.0
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 100.0
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 100.0
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 100.0
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.97
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.97
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 99.9
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 99.89
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 99.89
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 99.88
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 99.88
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 99.83
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.83
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 99.82
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.77
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.73
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.72
3vdp_A 212 Recombination protein RECR; zinc finger, DNA repai 87.67
2fmp_A 335 DNA polymerase beta; nucleotidyl transferase, tran 87.62
1vdd_A 228 Recombination protein RECR; helix-hairpin-helix, z 86.39
2ihm_A 360 POL MU, DNA polymerase MU; helix-turn-helix, trans 84.69
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 84.02
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 83.18
1jms_A 381 Terminal deoxynucleotidyltransferase; polymerase; 81.89
2bcq_A 335 DNA polymerase lambda; misalignment, extrahelical, 81.7
2ztd_A212 Holliday junction ATP-dependent DNA helicase RUVA; 81.18
1z00_B84 DNA repair endonuclease XPF; helix-hairpin-helix, 80.85
3b0x_A 575 DNA polymerase beta family (X family); structural 80.24
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
Probab=100.00  E-value=2.7e-42  Score=334.90  Aligned_cols=229  Identities=16%  Similarity=0.264  Sum_probs=190.2

Q ss_pred             EEEEecCCCCCCcEEEEEeecCCCCCCCCCHHHHHHHHHHHHHHhcCCccchHhHHHHHHHhHHHHhhhccccccccCCc
Q 016856           35 DVTICQPQQDPHSLRIEVRNSASGSAPSLSQEQQDALLAQVKRMLRLSEADERNVRDFKRIVRQVAQEEGEESQYMTDFS  114 (381)
Q Consensus        35 ~v~i~~~~~~~~~L~v~v~~~~~~~~~~~s~~~~~~i~~~v~r~l~Ld~d~~~~~~~f~~~~~~~~~~~~~~~~~~~~~g  114 (381)
                      +|.|+|.   ++.+.  +++.           +.+++.++|++||+||.|    +.++++....++.+.....   ...|
T Consensus        51 ~~~l~q~---~~~~~--~~~~-----------~~~~~~~~~~~~fdLd~d----~~~~~~~l~~Dp~l~~~~~---~~~g  107 (290)
T 3i0w_A           51 VVEVQKI---GEDVV--IYNI-----------NEEEFKNVWSEYFDLYRD----YGEIKKELSRDPLLKKSVD---FGEG  107 (290)
T ss_dssp             EEEEEEE---TTEEE--EETC-----------CHHHHHHTHHHHTTTTSC----HHHHHHHHTTSHHHHHHHH---HTTT
T ss_pred             EEEEEEc---CCEEE--EEcC-----------CHHHHHHHHHHHcCCCCC----HHHHHHHHhhCHHHHHHHH---HCCC
Confidence            5688887   66554  3331           235678889999999999    5555543322333221111   1246


Q ss_pred             ccccCCCChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhh
Q 016856          115 GRVFRSPTLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIA  194 (381)
Q Consensus       115 gRv~r~p~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  194 (381)
                      .|+++ +|+||.||++||+||++++++.+|.++||+.+|+                |+                      
T Consensus       108 lR~~~-~dpfE~Lv~~IlsQq~s~~~a~~~~~rL~~~~G~----------------~~----------------------  148 (290)
T 3i0w_A          108 IRILR-QDPFEILLSFIISANNRIPMIKKCINNISEKAGK----------------KL----------------------  148 (290)
T ss_dssp             CCCCC-CCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSC----------------EE----------------------
T ss_pred             CCCCC-CCHHHHHHHHHHhCcccHHHHHHHHHHHHHHhCC----------------Cc----------------------
Confidence            79999 7999999999999999999999999999999987                22                      


Q ss_pred             hhhcchhhhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcH
Q 016856          195 ESKASSEDYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGY  274 (381)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~Gy  274 (381)
                                                         +++             +..++.||||++|+++++++|++ +|+||
T Consensus       149 -----------------------------------~~~-------------g~~~~~fPtpe~la~~~~e~L~~-~g~g~  179 (290)
T 3i0w_A          149 -----------------------------------EYK-------------GKIYYAFPTVDKLHEFTEKDFEE-CTAGF  179 (290)
T ss_dssp             -----------------------------------EET-------------TEEEECCCCHHHHTTCCHHHHHH-TTCGG
T ss_pred             -----------------------------------ccC-------------CcccccCCcHHHHHCCCHHHHHH-cCCch
Confidence                                               122             23789999999999999999998 99999


Q ss_pred             HHHHHHHHHHHHHhCCCChhHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhh
Q 016856          275 RAGRILKLARGIVDGQIQLRELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVH  353 (381)
Q Consensus       275 RAkyI~~lA~~i~~G~l~Le~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly  353 (381)
                      ||+||+++|+++.+|.++++.|..+       +++++++.|++|||||||||+||| |++|++|+||+|+||+|+++++|
T Consensus       180 Ra~~I~~~A~~i~~g~~~l~~l~~~-------~~~~~~~~L~~lpGIG~~TA~~ill~~lg~pd~fpvD~~v~r~~~rl~  252 (290)
T 3i0w_A          180 RAKYLKDTVDRIYNGELNLEYIKSL-------NDNECHEELKKFMGVGPQVADCIMLFSMQKYSAFPVDTWVKKAMMSLY  252 (290)
T ss_dssp             GHHHHHHHHHHHHTTSSCHHHHHHS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHHCCTTCCCCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHhcC-------CHHHHHHHHHhCCCcCHHHHHHHHHHhCCCCCcceecHHHHHHHHHhc
Confidence            9999999999999999999999988       999999999999999999999995 89999999999999999999998


Q ss_pred             ccC-CChHHHHHHHHHHhccCCCc--ccccC
Q 016856          354 ARN-CTSKTVQMIAESIYGKYAPF--QFLAY  381 (381)
Q Consensus       354 ~~~-~s~k~i~~~~~~~~g~~aGw--q~Lfy  381 (381)
                      ... .+++++++.+++.|+||+||  +||||
T Consensus       253 ~~~~~~~~~i~~~~~~~~~p~~~~A~~~Lw~  283 (290)
T 3i0w_A          253 VAPDVSLKKIRDFGREKFGSLSGFAQQYLFY  283 (290)
T ss_dssp             SCTTCCHHHHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            653 67788999988999999999  88875
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus} Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A* Back     alignment and structure
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ... Back     alignment and structure
>2ztd_A Holliday junction ATP-dependent DNA helicase RUVA; recombination, branch migration, DNA BIND oligomerization, acidic PIN; 2.40A {Mycobacterium tuberculosis} PDB: 2ztc_A 2zte_A 2h5x_A 1bvs_A Back     alignment and structure
>1z00_B DNA repair endonuclease XPF; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 PDB: 2aq0_A* Back     alignment and structure
>3b0x_A DNA polymerase beta family (X family); structural genomics, riken structural genomics/proteomics in RSGI, polxc, PHP, DRP lyase; HET: DNA DGT; 1.36A {Thermus thermophilus} PDB: 3au2_A* 3au6_A* 3auo_A* 3b0y_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 100.0
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 99.91
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 99.78
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 99.78
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 99.77
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 99.77
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 99.74
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.73
d1mpga299 3-Methyladenine DNA glycosylase II (gene alkA or a 97.65
d2noha2124 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 97.49
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 94.56
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 94.3
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 93.71
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 90.33
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 89.85
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 88.87
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 88.77
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 88.62
d1vdda_ 199 Recombination protein RecR {Deinococcus radioduran 88.42
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 88.29
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 85.61
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 81.14
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 81.14
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 80.79
d2csba355 Topoisomerase V {Methanopyrus kandleri [TaxId: 232 80.61
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 80.08
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: DNA repair glycosylase, 2 C-terminal domains
domain: 8-oxoguanine glycosylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.9e-37  Score=279.78  Aligned_cols=167  Identities=22%  Similarity=0.291  Sum_probs=144.2

Q ss_pred             ChHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhcCCCCCCCCCCCCCCCcchhhhhhhhhhhhhhhhhhhhhhhcchh
Q 016856          122 TLFEDMVKCMLLCNCQWPRTLSMARALCELQWELQHCSPSISEDFIPQTPAGKESKRRQKVSKVASKLTSRIAESKASSE  201 (381)
Q Consensus       122 ~~fE~lv~~I~~~n~~~~r~~~m~~~L~~~~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  201 (381)
                      ||||+||++|||||++++++.+|.++||+.||+                ++.                            
T Consensus         1 DPfe~lv~~IisQq~s~~~~~~~~~~L~~~~G~----------------~~~----------------------------   36 (190)
T d2noha1           1 DPIECLFSFICSSNNNIARITGMVERLCQAFGP----------------RLI----------------------------   36 (190)
T ss_dssp             CHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHSC----------------EEE----------------------------
T ss_pred             ChHHHHHHHHHHcccCHHHHHHHHHHHHHHHCC----------------Ccc----------------------------
Confidence            799999999999999999999999999999997                221                            


Q ss_pred             hhhhhhcccccccccCCCCCCCCCCcccccccccCCCCCCCCCccccccCCCCHHHHhcCCHHHHHHhCcCcHHHHHHHH
Q 016856          202 DYMNLKLDCAGVLEENVQPSFPQNDIESDLHGLNELSTTDPPSARDRIGNFPSPRELANLDESFLAKRCNLGYRAGRILK  281 (381)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~FPTpe~La~~~~e~Lr~~~g~GyRAkyI~~  281 (381)
                                                  ..+|.             .+|.||||++|++++++++...+|+++||+||++
T Consensus        37 ----------------------------~~~~~-------------~~~~FP~~~~la~~~~e~~l~~~~~~~ra~~i~~   75 (190)
T d2noha1          37 ----------------------------QLDDV-------------TYHGFPSLQALAGPEVEAHLRKLGLGYRARYVSA   75 (190)
T ss_dssp             ----------------------------EETTE-------------EEECCCCHHHHHSTTHHHHHHHTTCTTHHHHHHH
T ss_pred             ----------------------------ccCcc-------------hhhccCCHHHHHHcchHHHHHhcchHHHHHHHHH
Confidence                                        22322             6789999999999999887777999999999999


Q ss_pred             HHHHHHhCCCCh---hHHHhhhhhcccCcHHHHHHHHhcCCccChHHHHHHH-HHhCCCCccccchHHHHHHHHhhccCC
Q 016856          282 LARGIVDGQIQL---RELEDMCNEASLTAYVKLAEQLSQINGFGPFTRNNVL-VCIGFYHVIPTDSETIRHLKQVHARNC  357 (381)
Q Consensus       282 lA~~i~~G~l~L---e~L~~l~~~~~~~~~ee~~~~Ll~L~GIGpwTAd~VL-~~Lg~~dvfPvDt~v~Ril~rly~~~~  357 (381)
                      +|+.+.++....   +.+..+       +++++++.|++|||||||||+||| |++|++|+||+|+||+|++.|+|+...
T Consensus        76 ~a~~i~~~~~~~~~l~~l~~~-------~~~~~~~~L~~l~GIG~wTA~~il~~~~~~~d~fpvD~~v~R~~~r~~~~~~  148 (190)
T d2noha1          76 SARAILEEQGGLAWLQQLRES-------SYEEAHKALCILPGVGTQVADCICLMALDKPQAVPVDVHMWHIAQRDYSWHP  148 (190)
T ss_dssp             HHHHHHHTSCSHHHHHHTTTS-------CHHHHHHHHTTSTTCCHHHHHHHHHHHSCCTTCCCCCHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHhcccccCHHHhcCC-------CcHHHHHHHHHcCCchHHHHHHHHHHHcCCCCeEeecHHHHHHHHHHhcccC
Confidence            999999877654   444444       899999999999999999999995 799999999999999999999987431


Q ss_pred             -----------ChHHHHHHHHHHhccCCCc--cccc
Q 016856          358 -----------TSKTVQMIAESIYGKYAPF--QFLA  380 (381)
Q Consensus       358 -----------s~k~i~~~~~~~~g~~aGw--q~Lf  380 (381)
                                 .++++...+++.||+|+||  +|||
T Consensus       149 ~~~~~k~~~~~~~~~~~~~~~~~~g~y~g~a~~~Lf  184 (190)
T d2noha1         149 TTSQAKGPSPQTNKELGNFFRSLWGPYAGWAAAVLF  184 (190)
T ss_dssp             SSSSCSSSCHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred             cchhhccccHHHHHHHHHHHHHHhcchhhHHHHHHh
Confidence                       1245677778999999999  8887
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure