Citrus Sinensis ID: 016877

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
Protein Sequence
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEHHHHHHHHHHHHcccEEcccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEccccccEEEcccccccccccEEEEEccEEEEEcccccccccccEEEEEEcccccEEccccccccccccEEEEEEEccEEEEEcccccccccccccEEEEEEcccccEEEcccccccccccEEEEEccEEEEEcccccccccccEEEEccEEEEcccccccEEEcccccccccccEEEEEccEEEEEcccccccccccccccccccccccEEEcEEEEEcccccEEEcccccccccccEEEEEEEccEEEEEccccccccccccEEEEEEEcccccccHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEccccccccccHEEHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEccccccccHcccccccccccccccccccccccEEEEEccEEEEEEcccccccccccEEEEcccccccccccccccccccccEEEEEEccEEEEEEccccccccccccEEEEEccccccccccccccccccccEEEEEccEEEEEEccccccccccEEEEEEEEccccccccccEcccccccccccEEEEEEccEEEEEEccccccccccccccEEEccccEEEcccEEEEccccccEEccccccccccccEEEEEEccEEEEEEccccccccccEEEEEEEEEEEcHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mgrsfvgknsttpspaRVVLSIFVMILGFALVADFfwassskftssylniasnwspyhnsiilpnngpqkgenigvktkkdvvpkrilpatfqdlpapelkwekmkaapvprldgaAIQIKNLLYVFAGygsidyvhshvdiynftdntwggrfdmpremahshlgmvTDGRYIYVVtgqygpqcrgptahtfvldtetkkwqdlpplpvpryapatqlWRGRLhvmggsgenrytpevdhwslavkdgkplekewrteipiprggphracvvvddrllviggqegdfmakpgspifkcsrrnevvyddvymlddemkwkvlpsmpkpdshiEFAWVLVNNSIVIVggttekhpttkKMVLVGEIFQFNLNTLVAVLNAML
Flexible Loop (DISEMBL)
mgrsfvgknsttpsparVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILpatfqdlpapelKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTEtkkwqdlpplpvPRYAPATQLWRGRLHVMGGSGENrytpevdhwslavkdgkplekewrteipiprggphraCVVVDDRLLVIGGQEgdfmakpgspifkcsrrneVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Low Complexity Region (SEG)
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Disordered region (IsUnstruct)
****************RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN********IGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLN***
Disordered Region (DISOPRED)
***************ARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQK****GVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Disordered Region (DISEMBL)
************PSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Disordered Region (DISPRO)
***********TPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN*************KKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRSFVGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	381	2.2.26 [Sep-21-2011]
Q9LK31	426	Kelch repeat-containing p	no	no	0.929	0.830	0.632	1e-131
Q5ZKD9	610	Kelch-like protein 20 OS=	yes	no	0.461	0.288	0.248	4e-08
Q6DFF6	604	Kelch-like protein 20 OS=	N/A	no	0.461	0.291	0.248	4e-08
B4J045	624	Kelch-like protein diablo	N/A	no	0.446	0.272	0.245	7e-08
B4LIG6	624	Kelch-like protein diablo	N/A	no	0.446	0.272	0.245	7e-08
B4L0G9	617	Kelch-like protein diablo	N/A	no	0.446	0.275	0.245	7e-08
Q8VCK5	604	Kelch-like protein 20 OS=	yes	no	0.461	0.291	0.243	9e-08
D3Z8N4	609	Kelch-like protein 20 OS=	yes	no	0.461	0.288	0.243	1e-07
Q9Y2M5	609	Kelch-like protein 20 OS=	yes	no	0.461	0.288	0.243	1e-07
Q08DK3	609	Kelch-like protein 20 OS=	yes	no	0.461	0.288	0.243	1e-07

>sp|Q9LK31|Y3272_ARATH Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1

 Score =  469 bits (1206), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/365 (63%), Positives = 278/365 (76%), Gaps = 11/365 (3%)

Query: 14  SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSII----LPNNGP 68
           S  R++L + F  +LG   +A F   SSS    S   + S W P +   I    + +   
Sbjct: 14  SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIV 71

Query: 69  QKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFA 128
           QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+
Sbjct: 72  QKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFS 128

Query: 129 GYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188
           GYGS+DYVHSHVD++NFTDN W  RF  P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGP
Sbjct: 129 GYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGP 188

Query: 189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 248
           T+ +FVLD+ TK W + P LP PRYAPATQ+WRGRLHVMGGS ENR     DHWS+AVKD
Sbjct: 189 TSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKD 248

Query: 249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308
           GK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   
Sbjct: 249 GKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNG 307

Query: 309 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368
           +VYM+D+EMKWK+LP MPK +SHIE AW++VNNSIVIVGGTT+ HP TK++VLVGEIF+F
Sbjct: 308 EVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRF 367

Query: 369 NLNTL 373
            L+TL
Sbjct: 368 QLDTL 372

Arabidopsis thaliana (taxid: 3702)

>sp|Q5ZKD9|KLH20_CHICK Kelch-like protein 20 OS=Gallus gallus GN=KLHL20 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 341 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 398

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 399 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 455

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 456 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 508

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 509 MIYAVGGRD 517

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Gallus gallus (taxid: 9031)

>sp|Q6DFF6|KLH20_XENLA Kelch-like protein 20 OS=Xenopus laevis GN=klhl20 PE=2 SV=1

 Score = 59.7 bits (143), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 335 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 392

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 393 PTSTCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 503 MIYAVGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of target proteins, leading to their degradation by the proteasome.

Xenopus laevis (taxid: 8355)

>sp|B4J045|KLHDB_DROGR Kelch-like protein diablo OS=Drosophila grimshawi GN=dbo PE=3 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQCLN---HVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila grimshawi (taxid: 7222)

>sp|B4LIG6|KLHDB_DROVI Kelch-like protein diablo OS=Drosophila virilis GN=dbo PE=3 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQC---LNHVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila virilis (taxid: 7244)

>sp|B4L0G9|KLHDB_DROMO Kelch-like protein diablo OS=Drosophila mojavensis GN=dbo PE=3 SV=1

 Score = 58.5 bits (140), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 45/183 (24%), Positives = 75/183 (40%), Gaps = 13/183 (7%)

Query: 104 KMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAH 162
           KM A    R  G  + + N LLY   G+    Y++S ++ Y+   N W      P     
Sbjct: 351 KMVAPMSKRRCGVGVAVLNDLLYAVGGHDGQSYLNS-IERYDPQTNQWSCDV-APTTSCR 408

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           + +G+     ++Y V GQ G QC     H    D +  KW  + P+   R   A  +  G
Sbjct: 409 TSVGVAVLDGFLYAVGGQDGVQCLN---HVERYDPKENKWSKVAPMTTRRLGVAVAVLSG 465

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG 282
            L+ +GGS        V+ +        P + +W    P+     H  C V ++ +  +G
Sbjct: 466 HLYAIGGSDGQCPLNTVERYD-------PRQNKWVAVNPMSTRRKHLGCAVFNNYIYAVG 518

Query: 283 GQE 285
           G++
Sbjct: 519 GRD 521

Probable substrate-specific adapter of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. May have a role in synapse differentiation and growth.

Drosophila mojavensis (taxid: 7230)

>sp|Q8VCK5|KLH20_MOUSE Kelch-like protein 20 OS=Mus musculus GN=Klhl20 PE=2 SV=2

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 335 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 392

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 393 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 449

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 450 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 502

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 503 MIYAVGGRD 511

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Mus musculus (taxid: 10090)

>sp|D3Z8N4|KLH20_RAT Kelch-like protein 20 OS=Rattus norvegicus GN=Klhl20 PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2M5|KLH20_HUMAN Kelch-like protein 20 OS=Homo sapiens GN=KLHL20 PE=1 SV=4

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Homo sapiens (taxid: 9606)

>sp|Q08DK3|KLH20_BOVIN Kelch-like protein 20 OS=Bos taurus GN=KLHL20 PE=2 SV=3

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 46/189 (24%), Positives = 76/189 (40%), Gaps = 13/189 (6%)

Query: 98  PELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM 156
           P+    +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      
Sbjct: 340 PQTNEWRMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-A 397

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P     + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A
Sbjct: 398 PTSTCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVA 454

Query: 217 TQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
             +  G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D
Sbjct: 455 VAVLGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQD 507

Query: 277 RLLVIGGQE 285
            +  +GG++
Sbjct: 508 MIYAVGGRD 516

Substrate-specific adapter of a BCR (BTB-CUL3-RBX1) E3 ubiquitin-protein ligase complex involved in interferon response. The BCR(KLHL20) E3 ubiquitin ligase complex mediates the ubiquitination of DAPK1, leading to its degradation by the proteasome, thereby acting as a negative regulator of apoptosis. Also acts as a regulator of endothelial migration during angiogenesis by controlling the activation of Rho GTPases.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
296090252	431	unnamed protein product [Vitis vinifera]	0.926	0.819	0.770	1e-164
225452169	423	PREDICTED: kelch repeat-containing prote	0.926	0.834	0.770	1e-164
225443351	426	PREDICTED: kelch repeat-containing prote	0.926	0.828	0.791	1e-164
224113255	424	predicted protein [Populus trichocarpa]	0.918	0.825	0.789	1e-164
12325370	1036	unknown protein; 27363-23366 [Arabidopsi	0.923	0.339	0.748	1e-162
255561818	425	conserved hypothetical protein [Ricinus	0.952	0.854	0.749	1e-162
224097430	424	predicted protein [Populus trichocarpa]	0.923	0.830	0.777	1e-161
145336621	415	kelch-like motif-containing protein [Ara	0.923	0.848	0.748	1e-160
449512779	383	PREDICTED: kelch repeat-containing prote	0.965	0.960	0.762	1e-158
449453359	427	PREDICTED: kelch repeat-containing prote	0.950	0.847	0.772	1e-157

>gi|296090252|emb|CBI40071.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/358 (77%), Positives = 315/358 (87%), Gaps = 5/358 (1%)

Query: 18  VVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQK-GENIG 75
           V+L+ FV  LG  LVAD+ WAS+S    +YL+IASNW+   +S +++P N  +K  + + 
Sbjct: 15  VLLASFVGFLGAILVADYLWASAS---FAYLSIASNWALTKSSTVVIPTNFDEKLQQRVD 71

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
           VK KK+    RIL ATF DLPAPELKWE+M+ APVPRLDGA+IQIKNLLYVFAGYG+++Y
Sbjct: 72  VKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQIKNLLYVFAGYGTLNY 131

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYN TDN WGGRFDMP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA  FVL
Sbjct: 132 VHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTARCFVL 191

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DTETKKWQDLP LP PRYAPATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK LEKE
Sbjct: 192 DTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKALEKE 251

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVYMLDD
Sbjct: 252 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVYMLDD 311

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKVLP MPKPDSHIEFAWV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L++L
Sbjct: 312 EMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLDSL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452169|ref|XP_002270625.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 276/358 (77%), Positives = 315/358 (87%), Gaps = 5/358 (1%)

Query: 18  VVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQK-GENIG 75
           V+L+ FV  LG  LVAD+ WAS+S    +YL+IASNW+   +S +++P N  +K  + + 
Sbjct: 15  VLLASFVGFLGAILVADYLWASAS---FAYLSIASNWALTKSSTVVIPTNFDEKLQQRVD 71

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
           VK KK+    RIL ATF DLPAPELKWE+M+ APVPRLDGA+IQIKNLLYVFAGYG+++Y
Sbjct: 72  VKDKKNRTSGRILSATFADLPAPELKWEEMQPAPVPRLDGASIQIKNLLYVFAGYGTLNY 131

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYN TDN WGGRFDMP+EMAHSHLGM TDGRYIY+V+GQYGPQCRGPTA  FVL
Sbjct: 132 VHSHVDIYNITDNAWGGRFDMPKEMAHSHLGMATDGRYIYIVSGQYGPQCRGPTARCFVL 191

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DTETKKWQDLP LP PRYAPATQLWRGRLHVMGG  ENR+TP ++HWSLAVK+GK LEKE
Sbjct: 192 DTETKKWQDLPTLPAPRYAPATQLWRGRLHVMGGGKENRHTPGLEHWSLAVKNGKALEKE 251

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR+EVVY+DVYMLDD
Sbjct: 252 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRHEVVYEDVYMLDD 311

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKVLP MPKPDSHIEFAWV+VNNSI+IVGGTTEKHP TK+M+LVGE+FQF+L++L
Sbjct: 312 EMKWKVLPPMPKPDSHIEFAWVVVNNSIIIVGGTTEKHPVTKRMILVGEVFQFHLDSL 369

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443351|ref|XP_002265018.1| PREDICTED: kelch repeat-containing protein At3g27220 [Vitis vinifera] gi|297735771|emb|CBI18458.3| unnamed protein product [Vitis vinifera]

 Score =  583 bits (1502), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 284/359 (79%), Positives = 318/359 (88%), Gaps = 6/359 (1%)

Query: 19  VLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWS--PYHNSIILPNNGPQKG-ENIG 75
           V+S F  +L   LVAD  WASS   +S Y +IA+NW+     +++I+P+  PQK  E   
Sbjct: 16  VISCF-GLLAAGLVADLLWASSKS-SSGYHSIATNWAFDDSRSTVIVPHQQPQKAKEGSD 73

Query: 76  VKTKKDV-VPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID 134
           VK KK   VP+R+L ATF DLPAPEL+WEKM  APVPRLDGAAIQIKNLLYVFAGYG+ID
Sbjct: 74  VKDKKKADVPERVLSATFADLPAPELEWEKMAPAPVPRLDGAAIQIKNLLYVFAGYGTID 133

Query: 135 YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
           +VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA TFV
Sbjct: 134 FVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARTFV 193

Query: 195 LDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK 254
           LDT+TK+W D+PPLPVPRYAPATQLWRGRLHVMGGSGENR+TP ++HWSLAVK+GK LEK
Sbjct: 194 LDTKTKQWSDMPPLPVPRYAPATQLWRGRLHVMGGSGENRHTPALEHWSLAVKNGKALEK 253

Query: 255 EWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD 314
           EWR+EIPIPRGGPHRAC+VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV+ DVYMLD
Sbjct: 254 EWRSEIPIPRGGPHRACIVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVFSDVYMLD 313

Query: 315 DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           DEMKWK LP MPKPDSHIEFAWV+VN+SI+IVGGTTEKHP TKKMVLVGE+FQFNL++L
Sbjct: 314 DEMKWKNLPPMPKPDSHIEFAWVMVNHSIIIVGGTTEKHPITKKMVLVGEVFQFNLDSL 372

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113255|ref|XP_002316438.1| predicted protein [Populus trichocarpa] gi|222865478|gb|EEF02609.1| predicted protein [Populus trichocarpa]

 Score =  582 bits (1501), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 282/357 (78%), Positives = 308/357 (86%), Gaps = 7/357 (1%)

Query: 22  IFVMILGFALVADFFWASSSKF-TSSYLNIASNWSPYHNS---IILPNNGPQKGENIGVK 77
           + V++LGF L+AD+ WASS  F +SSYL   SNW P  NS   +I+P   P   +    K
Sbjct: 16  LCVVLLGFGLIADYLWASSPHFASSSYL---SNWVPADNSQSHVIIPKQEPHHVDTKPPK 72

Query: 78  TKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH 137
            K D V  R L ATF DLPAPELKWEKM  APVPRLDGAAIQIK+LLYVFAGYG+ID VH
Sbjct: 73  IKADGVHDRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVFAGYGTIDLVH 132

Query: 138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT 197
           SHVDIYNFTDNTWG RF+MP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDT
Sbjct: 133 SHVDIYNFTDNTWGRRFNMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDT 192

Query: 198 ETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR 257
           +TK+WQDLPPLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWR
Sbjct: 193 KTKQWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWR 252

Query: 258 TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM 317
            EIPIPRGGPHRACVVV DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+V+MLDDEM
Sbjct: 253 PEIPIPRGGPHRACVVVSDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVHMLDDEM 312

Query: 318 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374
           KWK LP MPKPDSHIEFAW +VNNSIVI GGTTEKHPTTKKMVLVGE+F+FNL+TL 
Sbjct: 313 KWKPLPPMPKPDSHIEFAWAIVNNSIVIAGGTTEKHPTTKKMVLVGEVFRFNLDTLT 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12325370|gb|AAG52629.1|AC024261_16 unknown protein; 27363-23366 [Arabidopsis thaliana]

 Score =  577 bits (1487), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 268/358 (74%), Positives = 305/358 (85%), Gaps = 6/358 (1%)

Query: 16  ARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIG 75
            +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+   
Sbjct: 629 GKVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKD 682

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
            K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID 
Sbjct: 683 TKKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDL 742

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVL
Sbjct: 743 VHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVL 802

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE E
Sbjct: 803 DTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENE 862

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+
Sbjct: 863 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDE 922

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct: 923 EMKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 980

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561818|ref|XP_002521918.1| conserved hypothetical protein [Ricinus communis] gi|223538843|gb|EEF40442.1| conserved hypothetical protein [Ricinus communis]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 287/383 (74%), Positives = 325/383 (84%), Gaps = 20/383 (5%)

Query: 7   GKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNN 66
           GK  +T    R+VL + V +LGF  VA++ WASS    S+++N+  N+ P   ++ILP +
Sbjct: 6   GKQKST----RLVL-VCVALLGFGAVANYLWASSFPHLSNWVNV-DNYVP---NVILPKD 56

Query: 67  GPQKGENIGVKTKKDV--------VPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
             Q    +G   +K          +P+R L ATF DLPAP+LKWEKM +APVPRLDGAAI
Sbjct: 57  --QNPRQVGADKEKKPKKDKDKKDIPERFLSATFADLPAPDLKWEKMTSAPVPRLDGAAI 114

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLLYVFAGYG+IDYVHSHVDIYNFTDNTWG RFDMP+EMAHSHLGMVTDGRYIYVV+
Sbjct: 115 QIKNLLYVFAGYGTIDYVHSHVDIYNFTDNTWGKRFDMPKEMAHSHLGMVTDGRYIYVVS 174

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTETK+WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 175 GQYGPQCRGPTAHTFVLDTETKQWQDMPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPG 234

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWRTEIPIPRGGPHRACVVV+D+L+VIGGQEGDFMAKPGSPIFK
Sbjct: 235 LEHWSLAVKDGKALEKEWRTEIPIPRGGPHRACVVVNDQLIVIGGQEGDFMAKPGSPIFK 294

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT+KHP TKK
Sbjct: 295 CSRRNEVVYGDVYMLDDDMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTDKHPVTKK 354

Query: 359 MVLVGEIFQFNL-NTLVAVLNAM 380
           M+L GE+FQFNL NT  +V+  +
Sbjct: 355 MILNGEVFQFNLDNTKWSVIGKL 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097430|ref|XP_002310931.1| predicted protein [Populus trichocarpa] gi|222850751|gb|EEE88298.1| predicted protein [Populus trichocarpa]

 Score =  575 bits (1481), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 276/355 (77%), Positives = 304/355 (85%), Gaps = 3/355 (0%)

Query: 22  IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYH--NSIILPNNGPQKGENIGVKTK 79
           + V++LGF L+ D+ WASS  F SS   I++   P +  +++I+P   P   +    K K
Sbjct: 16  VCVVLLGFGLIGDYLWASSPHFASSSY-ISNRVPPKYPQSNVIIPKQEPHLADTKPQKIK 74

Query: 80  KDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH 139
            D V  R L ATF DLPAPELKWEKM  APVPRLDGAAIQIK+LLYVFAGYG+ID+VHSH
Sbjct: 75  VDGVHDRSLSATFADLPAPELKWEKMANAPVPRLDGAAIQIKDLLYVFAGYGTIDFVHSH 134

Query: 140 VDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET 199
           VDIYNFT NTWGGRFDMP+EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  FVLDTET
Sbjct: 135 VDIYNFTGNTWGGRFDMPKEMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTARNFVLDTET 194

Query: 200 KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE 259
           +KWQDLPPLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWSLAVKDGK LEKEWRTE
Sbjct: 195 RKWQDLPPLPVPRYAPATQLWRGRLHVMGGSKENRHTPALEHWSLAVKDGKALEKEWRTE 254

Query: 260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKW 319
           IPIP GGPHRACVVV+DRLL+IGGQEGDFMAKPGSPIFKCSRRNE+VYD+VYMLDDEMKW
Sbjct: 255 IPIPHGGPHRACVVVNDRLLIIGGQEGDFMAKPGSPIFKCSRRNEIVYDEVYMLDDEMKW 314

Query: 320 KVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV 374
           K L  MPK DSHIEFAW +VNNSIVI GGTTEKHP TKKMVLVGE+FQFNL+TL 
Sbjct: 315 KPLSPMPKADSHIEFAWAIVNNSIVIAGGTTEKHPITKKMVLVGEVFQFNLDTLA 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145336621|ref|NP_175565.2| kelch-like motif-containing protein [Arabidopsis thaliana] gi|28416695|gb|AAO42878.1| At1g51540 [Arabidopsis thaliana] gi|110743235|dbj|BAE99508.1| At1g51540 [Arabidopsis thaliana] gi|332194560|gb|AEE32681.1| kelch-like motif-containing protein [Arabidopsis thaliana]

 Score =  569 bits (1466), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 268/358 (74%), Positives = 305/358 (85%), Gaps = 6/358 (1%)

Query: 16  ARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIG 75
            +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+   
Sbjct: 8   GKVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKD 61

Query: 76  VKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDY 135
            K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID 
Sbjct: 62  TKKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDL 121

Query: 136 VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL 195
           VHSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVL
Sbjct: 122 VHSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVL 181

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE E
Sbjct: 182 DTDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENE 241

Query: 256 WRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDD 315
           WR+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+
Sbjct: 242 WRSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDE 301

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
           EMKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct: 302 EMKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 359

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512779|ref|XP_004164137.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  565 bits (1455), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 289/379 (76%), Positives = 325/379 (85%), Gaps = 11/379 (2%)

Query: 6   VGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSP-YHNSIILP 64
           + + S+  +  ++VL I + +LGFAL+AD+ WASSS+  S  L+IASNW+P YH    +P
Sbjct: 1   MARPSSKHASLKLVL-ICLALLGFALIADYIWASSSR-FSYSLSIASNWAPPYHPDTSIP 58

Query: 65  ------NNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
                 +  P KGE    K  KDV P R L ATF DLPAPEL W+KM  APVPRLDGAAI
Sbjct: 59  VTTKPDSANPTKGE--AAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAI 116

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLL+VFAGYG+ID VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGM TDGRYIYVVT
Sbjct: 117 QIKNLLFVFAGYGTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVT 176

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTET++WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 177 GQYGPQCRGPTAHTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPA 236

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWR+EIPIPRGGPHRAC+VVDDRL VIGGQEGDFMAKPGSPIFK
Sbjct: 237 LEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFK 296

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWV+VNNSIVIVGGTT+KHP TKK
Sbjct: 297 CSRRNEVVYSDVYMLDDDMKWKVLPSMPKPDSHIEFAWVVVNNSIVIVGGTTDKHPQTKK 356

Query: 359 MVLVGEIFQFNLNTLVAVL 377
           MVL GE+FQF+L   V+++
Sbjct: 357 MVLNGEVFQFSLRLQVSLI 375

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453359|ref|XP_004144425.1| PREDICTED: kelch repeat-containing protein At3g27220-like [Cucumis sativus]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 288/373 (77%), Positives = 321/373 (86%), Gaps = 11/373 (2%)

Query: 6   VGKNSTTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSP-YHNSIILP 64
           + + S+  +  ++VL I + +LGFAL+AD+ WASSS+  S  L+IASNW+P YH    +P
Sbjct: 1   MARPSSKHASLKLVL-ICLALLGFALIADYIWASSSR-FSYSLSIASNWAPPYHPDTSIP 58

Query: 65  ------NNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAI 118
                 +  P KGE    K  KDV P R L ATF DLPAPEL W+KM  APVPRLDGAAI
Sbjct: 59  VTTKPDSANPTKGE--AAKGGKDVNPGRALSATFADLPAPELTWKKMTTAPVPRLDGAAI 116

Query: 119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT 178
           QIKNLL+VFAGYG+ID VHSHVD+YNFTDNTWGGRFDMP+EMAHSHLGM TDGRYIYVVT
Sbjct: 117 QIKNLLFVFAGYGTIDSVHSHVDVYNFTDNTWGGRFDMPKEMAHSHLGMATDGRYIYVVT 176

Query: 179 GQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPE 238
           GQYGPQCRGPTAHTFVLDTET++WQD+PPLPVPRYAPATQLWRGRLHVMGGS ENR+TP 
Sbjct: 177 GQYGPQCRGPTAHTFVLDTETRQWQDMPPLPVPRYAPATQLWRGRLHVMGGSMENRHTPA 236

Query: 239 VDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK 298
           ++HWSLAVKDGK LEKEWR+EIPIPRGGPHRAC+VVDDRL VIGGQEGDFMAKPGSPIFK
Sbjct: 237 LEHWSLAVKDGKALEKEWRSEIPIPRGGPHRACIVVDDRLYVIGGQEGDFMAKPGSPIFK 296

Query: 299 CSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKK 358
           CSRRNEVVY DVYMLDD+MKWKVLPSMPKPDSHIEFAWV+VNNSIVIVGGTT+KHP TKK
Sbjct: 297 CSRRNEVVYSDVYMLDDDMKWKVLPSMPKPDSHIEFAWVVVNNSIVIVGGTTDKHPQTKK 356

Query: 359 MVLVGEIFQFNLN 371
           MVL GE+FQF+L 
Sbjct: 357 MVLNGEVFQFSLR 369

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	381
TAIR|locus:2033944	415	AT1G51540 [Arabidopsis thalian	0.921	0.845	0.750	3.8e-149
TAIR|locus:2086528	426	AT3G27220 "AT3G27220" [Arabido	0.929	0.830	0.635	1e-123
UNIPROTKB|G4N9D1	338	MGG_10013 "Uncharacterized pro	0.635	0.715	0.246	1.3e-09
MGI|MGI:2442630	350	Klhdc8a "kelch domain containi	0.501	0.545	0.271	8.6e-09
UNIPROTKB|Q6DFF6	604	klhl20 "Kelch-like protein 20"	0.451	0.284	0.252	2e-08
UNIPROTKB|F1NMM8	609	KLHL20 "Kelch-like protein 20"	0.451	0.282	0.252	2e-08
UNIPROTKB|Q5ZKD9	610	KLHL20 "Kelch-like protein 20"	0.451	0.281	0.252	2e-08
UNIPROTKB|F1NGH0	617	KLHL20 "Kelch-like protein 20"	0.451	0.278	0.252	2.1e-08
ZFIN|ZDB-GENE-040426-1935	591	klhl20 "kelch-like 20 (Drosoph	0.451	0.291	0.252	2.5e-08
UNIPROTKB|B4DUR0	420	KLHL20 "Kelch-like protein 20"	0.451	0.409	0.247	3e-08

TAIR|locus:2033944 AT1G51540 [Arabidopsis thaliana (taxid:3702)]

 Score = 1456 (517.6 bits), Expect = 3.8e-149, P = 3.8e-149
 Identities = 268/357 (75%), Positives = 305/357 (85%)

Query:    17 RVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGV 76
             +VVL   + +L   L+ADF WA+S +F+S+ ++   +      ++I+P      G+    
Sbjct:     9 KVVLVSCIALLATGLIADFLWATSHRFSSAAISAGLSLPSSLTTVIVP------GQEKDT 62

Query:    77 KTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYV 136
             K KKD V +R L  TFQDLPAPELKWEKM A+PVPRLDGAAIQI++LLYVFAGYG+ID V
Sbjct:    63 KKKKDSVKERKLSNTFQDLPAPELKWEKMAASPVPRLDGAAIQIRDLLYVFAGYGTIDLV 122

Query:   137 HSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD 196
             HSHVDIYNFTDN+WGGRF+MP++MAHSHLGMVTDGRYIY+VTGQ+GPQCRGPTA TFVLD
Sbjct:   123 HSHVDIYNFTDNSWGGRFNMPKDMAHSHLGMVTDGRYIYIVTGQFGPQCRGPTAKTFVLD 182

Query:   197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW 256
             T+T  W+D  PLPVPRYAPATQLWRGRLHVMGGS ENR+TP ++HWS+AVKDGK LE EW
Sbjct:   183 TDTNTWKDFVPLPVPRYAPATQLWRGRLHVMGGSKENRFTPGLEHWSIAVKDGKSLENEW 242

Query:   257 RTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDE 316
             R+EIPIPRGGPHRACVVVDDRL VIGGQEGDFMAKPGSPIFKCSRR EVV+ DVYMLD+E
Sbjct:   243 RSEIPIPRGGPHRACVVVDDRLFVIGGQEGDFMAKPGSPIFKCSRRMEVVFSDVYMLDEE 302

Query:   317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL 373
             MKWKV+P MPKPDSHIEFAW +VNNSIVIVGGTTEKHP TKKMVLVGEIFQFNLNTL
Sbjct:   303 MKWKVMPPMPKPDSHIEFAWKVVNNSIVIVGGTTEKHPETKKMVLVGEIFQFNLNTL 359

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006869 "lipid transport" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR|locus:2086528 AT3G27220 "AT3G27220" [Arabidopsis thaliana (taxid:3702)]

 Score = 1216 (433.1 bits), Expect = 1.0e-123, P = 1.0e-123
 Identities = 232/365 (63%), Positives = 279/365 (76%)

Query:    14 SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHN-SIILP---NNGP 68
             S  R++L + F  +LG   +A F   SSS    S   + S W P +   I +P   +   
Sbjct:    14 SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIV 71

Query:    69 QKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFA 128
             QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+
Sbjct:    72 QKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFS 128

Query:   129 GYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP 188
             GYGS+DYVHSHVD++NFTDN W  RF  P+EMA+SHLG+VTDGRY+YVV+GQ GPQCRGP
Sbjct:   129 GYGSLDYVHSHVDVFNFTDNKWCDRFHTPKEMANSHLGIVTDGRYVYVVSGQLGPQCRGP 188

Query:   189 TAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKD 248
             T+ +FVLD+ TK W + P LP PRYAPATQ+WRGRLHVMGGS ENR     DHWS+AVKD
Sbjct:   189 TSRSFVLDSFTKTWLEFPSLPAPRYAPATQIWRGRLHVMGGSKENRNAVAFDHWSIAVKD 248

Query:   249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD 308
             GK L+ EWR E+PIPRGGPHRACVV +D+LLVIGGQEGDFMAKP SPIFKCSRR E+   
Sbjct:   249 GKALD-EWREEVPIPRGGPHRACVVANDKLLVIGGQEGDFMAKPNSPIFKCSRRREIFNG 307

Query:   309 DVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF 368
             +VYM+D+EMKWK+LP MPK +SHIE AW++VNNSIVIVGGTT+ HP TK++VLVGEIF+F
Sbjct:   308 EVYMMDEEMKWKMLPPMPKNNSHIESAWIIVNNSIVIVGGTTDWHPVTKRLVLVGEIFRF 367

Query:   369 NLNTL 373
              L+TL
Sbjct:   368 QLDTL 372

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009061 "anaerobic respiration" evidence=IEP;IMP

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

UNIPROTKB|G4N9D1 MGG_10013 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 68/276 (24%), Positives = 115/276 (41%)

Query:    88 LPATFQDLPAPELKWEKMKAAPV-PRLDGAAIQIKNLLYVFAGYGSIDYVH------SHV 140
             L A+   LPA    W+ +   P+ P+ + +   I + +Y+  G   +          S++
Sbjct:    15 LVASAVSLPARSNSWQLLAPIPLGPQQEESVASIGSDIYIVGGINLVPANRTTIPSVSYM 74

Query:   141 DIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK 200
              +Y+   NTW    D+P  + H+++  +  G  ++V+    G     P A+++  D  T 
Sbjct:    75 QVYSTAANTWRRVADIPTPVNHANMASL--GGKLFVLGAIAGQGVNYPIANSYAYDPATD 132

Query:   201 KWQDLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPEVDH---WSLAVKDGKPLEKE 255
              W  LPP+P    R A A  +W   + + GG     +         W+ ++ + + L+  
Sbjct:   133 AWSALPPMPAGTERGASAVGVWGDNIVIAGGLNYTNFLNSAQTTVPWT-SMFNTRTLQ-- 189

Query:   256 WRTEIP-IPRGG-PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML 313
             W T  P +P GG  H   VV+ +   V+GG+        G      + R  V+  D+   
Sbjct:   190 WDTAFPDLPDGGRDHCGGVVLGNTFYVVGGRVS------GEK----NVRGTVLAMDLSKA 239

Query:   314 DDEMKWKVLPS-MPKPDSHIEFAWVLVNNSIVIVGG 348
               E  W  L   MP P   I  A  LVN  +   GG
Sbjct:   240 KRE--WVELKGKMPTPRGSISTA--LVNGKVYTFGG 271

GO:0005575 "cellular_component" evidence=ND

MGI|MGI:2442630 Klhdc8a "kelch domain containing 8A" [Mus musculus (taxid:10090)]

 Score = 141 (54.7 bits), Expect = 8.6e-09, Sum P(2) = 8.6e-09
 Identities = 57/210 (27%), Positives = 93/210 (44%)

Query:    88 LPATFQDLPAPEL-KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT 146
             +P    ++ +PE  +W  + + P  R   A   +   + V  G G+       V++YN  
Sbjct:    44 VPMDCFEVYSPEADQWTSLPSLPTARAGVAITALGKRIMVIGGVGTNQLPVKVVEMYNID 103

Query:   147 DNTWGGRFDMPREMAHSHLGM-VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205
             +  W  R  + RE A   +G+ VT   Y     G  G   R P  +    D     W  L
Sbjct:   104 EGKWKKR-SVLREAA---MGISVTAKDYRVYAAGGMGLDLR-PHNYLQHYDMLKDMWVSL 158

Query:   206 PPLPVPRYAPATQLWRG-RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-IP 263
              P+P PRYA AT   RG +++V+GG  +++Y       +  V D +   + W T+ P IP
Sbjct:   159 APMPTPRYA-ATSFLRGSKIYVLGGR-QSKYAVN----AFEVFDIE--SRSW-TKFPNIP 209

Query:   264 RGGPHRACVVVDDRLLVIGG-QEGDFMAKP 292
                   + V +D+ L  +GG ++G    +P
Sbjct:   210 CKRAFSSFVTLDNHLYSLGGLRQGRLYRQP 239

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q6DFF6 klhl20 "Kelch-like protein 20" [Xenopus laevis (taxid:8355)]

 Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   339 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 395

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   396 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 452

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   453 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 505

Query:   280 VIGGQE 285
              +GG++
Sbjct:   506 AVGGRD 511

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0044444 "cytoplasmic part" evidence=ISS

UNIPROTKB|F1NMM8 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   344 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 400

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   401 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 457

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   458 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 510

Query:   280 VIGGQE 285
              +GG++
Sbjct:   511 AVGGRD 516

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q5ZKD9 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   345 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 401

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   402 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 458

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   459 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 511

Query:   280 VIGGQE 285
              +GG++
Sbjct:   512 AVGGRD 517

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0044444 "cytoplasmic part" evidence=ISS

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=ISS

GO:0016605 "PML body" evidence=ISS

GO:0019964 "interferon-gamma binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

UNIPROTKB|F1NGH0 KLHL20 "Kelch-like protein 20" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   352 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 408

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   409 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 465

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   466 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 518

Query:   280 VIGGQE 285
              +GG++
Sbjct:   519 AVGGRD 524

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019964 "interferon-gamma binding" evidence=IEA

GO:0031463 "Cul3-RING ubiquitin ligase complex" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

ZFIN|ZDB-GENE-040426-1935 klhl20 "kelch-like 20 (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 158 (60.7 bits), Expect = 2.5e-08, P = 2.5e-08
 Identities = 47/186 (25%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   326 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 382

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G Y+Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   383 TCRTSVGVAVLGGYLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 439

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   440 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTVAPMGTRRKHLGCAVYQDMIY 492

Query:   280 VIGGQE 285
              +GG++
Sbjct:   493 SVGGRD 498

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|B4DUR0 KLHL20 "Kelch-like protein 20" [Homo sapiens (taxid:9606)]

 Score = 155 (59.6 bits), Expect = 3.0e-08, P = 3.0e-08
 Identities = 46/186 (24%), Positives = 76/186 (40%)

Query:   101 KWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
             +W +M A+   R  G  + +  +LLY   G+    Y++S V+ Y+   N W      P  
Sbjct:   155 EW-RMVASMSKRRCGVGVSVLDDLLYAVGGHDGSSYLNS-VERYDPKTNQWSSDV-APTS 211

Query:   160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                + +G+   G ++Y V GQ G  C          D +  KW  +  +   R   A  +
Sbjct:   212 TCRTSVGVAVLGGFLYAVGGQDGVSCLNIVER---YDPKENKWTRVASMSTRRLGVAVAV 268

Query:   220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLL 279
               G L+ +GGS        V+ ++       P E  W T  P+     H  C V  D + 
Sbjct:   269 LGGFLYAVGGSDGTSPLNTVERYN-------PQENRWHTIAPMGTRRKHLGCAVYQDMIY 321

Query:   280 VIGGQE 285
              +GG++
Sbjct:   322 AVGGRD 327

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.1.3.n1	LOW CONFIDENCE prediction!
3rd Layer	5.1.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	381
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	2e-12
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	1e-10
PHA03098	534	PHA03098, PHA03098, kelch-like protein; Provisiona	7e-09
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	3e-08
TIGR03548	323	TIGR03548, mutarot_permut, cyclically-permuted mut	5e-07
pfam13964	50	pfam13964, Kelch_6, Kelch motif	3e-05
smart00612	47	smart00612, Kelch, Kelch domain	3e-04
pfam13415	48	pfam13415, Kelch_3, Galactose oxidase, central dom	4e-04
pfam01344	46	pfam01344, Kelch_1, Kelch motif	4e-04
COG3055	381	COG3055, COG3055, Uncharacterized protein conserve	9e-04
pfam13418	49	pfam13418, Kelch_4, Galactose oxidase, central dom	0.002
pfam01344	46	pfam01344, Kelch_1, Kelch motif	0.002
PRK14131	376	PRK14131, PRK14131, N-acetylneuraminic acid mutaro	0.002
PHA02713	557	PHA02713, PHA02713, hypothetical protein; Provisio	0.004

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 67.9 bits (166), Expect = 2e-12
 Identities = 45/158 (28%), Positives = 67/158 (42%), Gaps = 30/158 (18%)

Query: 196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE 255
           DT+TK W  +P L  PR  P   ++  R++V+GG   +     V+ W       KP E +
Sbjct: 317 DTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESW-------KPGESK 369

Query: 256 WRTEIPI--PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML 313
           WR E P+  PR  P    V V++ + VIGG            I K    N+ +   V   
Sbjct: 370 WREEPPLIFPRYNP--CVVNVNNLIYVIGG------------ISK----NDELLKTVECF 411

Query: 314 D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT 350
             +  KW      P P SH     +  +  I ++GG +
Sbjct: 412 SLNTNKWSKG--SPLPISHYGGCAIYHDGKIYVIGGIS 447

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 62.5 bits (152), Expect = 1e-10
 Identities = 55/236 (23%), Positives = 87/236 (36%), Gaps = 32/236 (13%)

Query: 116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM--PREMAHSHLGMVTDGRY 173
            ++ + N++Y   G    +   + V  Y+    +W    ++  PR+      G+      
Sbjct: 289 GSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP----GVTVFNNR 344

Query: 174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN 233
           IYV+ G Y                   KW++ PPL  PRY P        ++V+GG  +N
Sbjct: 345 IYVIGGIYN---SISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKN 401

Query: 234 RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPG 293
                 D     V+       +W    P+P        +  D ++ VIGG          
Sbjct: 402 ------DELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGI--------- 446

Query: 294 SPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           S I      N  VY+ V   +    KW  L S+  P   I  +  + NN I +VGG
Sbjct: 447 SYI-----DNIKVYNIVESYNPVTNKWTELSSLNFP--RINASLCIFNNKIYVVGG 495

Length = 534

>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional

 Score = 57.1 bits (138), Expect = 7e-09
 Identities = 34/146 (23%), Positives = 57/146 (39%), Gaps = 10/146 (6%)

Query: 99  ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158
           E KW +      PR +   + + NL+YV  G    D +   V+ ++   N W        
Sbjct: 367 ESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKW----SKGS 422

Query: 159 EMAHSHLGMVTDGR--YIYVVTGQYGPQCRGPTAHTFVL--DTETKKWQDLPPLPVPRYA 214
            +  SH G         IYV+ G           +  V   +  T KW +L  L  PR  
Sbjct: 423 PLPISHYGGCAIYHDGKIYVIGGI--SYIDNIKVYNIVESYNPVTNKWTELSSLNFPRIN 480

Query: 215 PATQLWRGRLHVMGGSGENRYTPEVD 240
            +  ++  +++V+GG     Y  E++
Sbjct: 481 ASLCIFNNKIYVVGGDKYEYYINEIE 506

Length = 534

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 49.2 bits (118), Expect = 3e-08
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP 157
           PR    +  I    LY+F G      V S V +++ + NTW     +P
Sbjct: 1   PRAYHTSTSIGDGRLYLFGGENEDGSVLSDVWVFDLSTNTWTRLPSLP 48

Length = 49

>gnl|CDD|211835 TIGR03548, mutarot_permut, cyclically-permuted mutarotase family protein

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 49/205 (23%), Positives = 76/205 (37%), Gaps = 45/205 (21%)

Query: 100 LKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
           LKW K    P     GA+I  +N +Y   G  S +   S   +Y  T +      +    
Sbjct: 51  LKWVKAGQLPYAAAYGASISTENGIYYIGGSNSSE---SFSSVYRITLD------ESKEA 101

Query: 160 MAHSHL-----------GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL 208
           +    L               DG+ +YV  G        P+   +  + ET++W++LP  
Sbjct: 102 LIIETLPSLPFAMDNGSATYKDGK-LYVGGGN---ANGKPSNKFYCFNLETQEWEELPDF 157

Query: 209 PV-PRYAPATQLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEI 260
           P  PR  P     +  L+V GG G+N       +Y+P+   W       + +        
Sbjct: 158 PGAPRVQPVCVKLQNELYVFGG-GDNIAYTDGYKYSPKTGTW-------EKVADPLSDGE 209

Query: 261 PIPRGGPHRACVVV--DDRLLVIGG 283
           PI   G   A  +   +  LL IGG
Sbjct: 210 PISLLG---AASIAINESLLLCIGG 231

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. Length = 323

>gnl|CDD|206134 pfam13964, Kelch_6, Kelch motif

 Score = 40.9 bits (96), Expect = 3e-05
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR 212
             +    V+ G  IYV  G              V D ET  W+ LPPLP PR
Sbjct: 1   PRTGHSAVSVGGKIYVFGGYSNGSKASNKVL--VYDPETGSWEKLPPLPTPR 50

Length = 50

>gnl|CDD|128874 smart00612, Kelch, Kelch domain

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 18/43 (41%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           IYVV G  G Q         V D ET KW  LP +P PR    
Sbjct: 2   IYVVGGFDGGQR---LKSVEVYDPETNKWTPLPSMPTPRSGHG 41

Length = 47

>gnl|CDD|222113 pfam13415, Kelch_3, Galactose oxidase, central domain

 Score = 37.7 bits (88), Expect = 4e-04
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 2/43 (4%)

Query: 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRY 213
           G  IYV  G      R      +V D +T  W+ L  LP PR 
Sbjct: 1   GGKIYVFGGLGDGGTR--LNDLWVYDLDTNTWEKLGDLPGPRA 41

Length = 48

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 37.6 bits (88), Expect = 4e-04
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209
           S  G+V  G  IYV+ G  G Q     +   V D ET  W  LP +P
Sbjct: 3   SGAGVVVLGGKIYVIGGYDGGQ---SLSSVEVYDPETNTWSKLPSMP 46

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|225597 COG3055, COG3055, Uncharacterized protein conserved in bacteria [Function unknown]

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 67/325 (20%), Positives = 103/325 (31%), Gaps = 75/325 (23%)

Query: 94  DLPAPELKWEKMKAAPVPRLDGAA---IQIKNLLYVFAGYG----SIDYVHSHVDIYNFT 146
           DL  P   W K+   P    + A    I  K  LYVF GYG    S   V +    Y+ +
Sbjct: 64  DLKKPGKGWTKIADFPGGARNQAVAAVIGGK--LYVFGGYGKSVSSSPQVFNDAYRYDPS 121

Query: 147 DNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQ---------YGPQCRGPT------- 189
            N+W       P  +         +G  IY   G                G         
Sbjct: 122 TNSWHKLDTRSPTGLV-GASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKI 180

Query: 190 -AHTFVLDTETKKWQDLPPLPVPRYAPATQLWR--GRLHVMG--GSGENRYTPEVDHWSL 244
            AH F    E   +       V  Y P+T  WR  G     G  GS       ++   + 
Sbjct: 181 IAHYFDKKAEDYFFNKE----VLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLING 236

Query: 245 AVKDGKPLEKEWRTEI-------------PIPRGGPHRACV-----VVDDRLLVIGG--- 283
            +K G    +  + +              P P G              +  +LV GG   
Sbjct: 237 EIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANF 296

Query: 284 -------QEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 336
                  + G F A  G    K          +VY+ D+   WK++  +P+  ++     
Sbjct: 297 PGALKAYKNGKFYAHEGLS--KSWN------SEVYIFDNG-SWKIVGELPQGLAY--GVS 345

Query: 337 VLVNNSIVIVGGTTEKHPTTKKMVL 361
           +  NN ++++GG T     T ++  
Sbjct: 346 LSYNNKVLLIGGETSGGKATTRVYS 370

Length = 381

>gnl|CDD|205596 pfam13418, Kelch_4, Galactose oxidase, central domain

 Score = 35.7 bits (83), Expect = 0.002
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 18/65 (27%)

Query: 263 PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 321
           PR   H +  + D RL + GG+  D                  V  DV++ D     W  
Sbjct: 1   PRAY-HTSTSIGDGRLYLFGGENEDG----------------SVLSDVWVFDLSTNTWTR 43

Query: 322 LPSMP 326
           LPS+P
Sbjct: 44  LPSLP 48

Length = 49

>gnl|CDD|201739 pfam01344, Kelch_1, Kelch motif

 Score = 35.3 bits (82), Expect = 0.002
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW 150
           PR     + +   +YV  GY     + S V++Y+   NTW
Sbjct: 1   PRSGAGVVVLGGKIYVIGGYDGGQSLSS-VEVYDPETNTW 39

The kelch motif was initially discovered in Kelch. In this protein there are six copies of the motif. It has been shown that the Drosophila ring canal kelch protein is related to Galactose Oxidase, for which a structure has been solved. The kelch motif forms a beta sheet. Several of these sheets associate to form a beta propeller structure as found in pfam00064, pfam00400 and pfam00415. Length = 46

>gnl|CDD|237617 PRK14131, PRK14131, N-acetylneuraminic acid mutarotase; Provisional

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 67/334 (20%), Positives = 110/334 (32%), Gaps = 87/334 (26%)

Query: 94  DLPAPELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTD 147
           DL AP   W K+ A P  PR    A  I   LYVF G G  +      V   V  Y+   
Sbjct: 56  DLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKT 115

Query: 148 NTWGGRFDMPREMAHSHLGMV------TDGRYIYVVTG---------------------- 179
           N+W       +    S +G+             Y+  G                      
Sbjct: 116 NSW------QKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTP 169

Query: 180 ------QY---GPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGG 229
                  Y    P+           D  T +W++    P +     A  +   +L ++  
Sbjct: 170 KDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLI-- 227

Query: 230 SGENR---YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV------VVDDRLLV 280
           +GE +    T  V         G  L+ +   ++P   GG  +  V        +  LLV
Sbjct: 228 NGEIKPGLRTDAV---KQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLV 284

Query: 281 IGG----------QEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDS 330
            GG          Q G   A  G          +   D++Y L +  KW+ +  +P+  +
Sbjct: 285 AGGANFPGARENYQNGKLYAHEG--------LKKSWSDEIYALVNG-KWQKVGELPQGLA 335

Query: 331 H-IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVG 363
           + +  +W   NN ++++GG T        + L+ 
Sbjct: 336 YGVSVSW---NNGVLLIGGETAGGKAVSDVTLLS 366

Length = 376

>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 18/91 (19%)

Query: 261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWK 320
           P+ +     +  V+DD +  IGGQ G  + +      +C           Y + D+ KWK
Sbjct: 337 PMIKNRCRFSLAVIDDTIYAIGGQNGTNVERT----IEC-----------YTMGDD-KWK 380

Query: 321 VLPSMPKPDSHIEFAWVLVNNSIVIVGGTTE 351
           +LP M  P +   +   +++  I I+GG TE
Sbjct: 381 MLPDM--PIALSSYGMCVLDQYIYIIGGRTE 409

Length = 557

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	381
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PLN02153	341	epithiospecifier protein	100.0
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	100.0
PLN02193	470	nitrile-specifier protein	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PLN02153	341	epithiospecifier protein	100.0
PLN02193	470	nitrile-specifier protein	100.0
PHA02713	557	hypothetical protein; Provisional	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
PHA03098	534	kelch-like protein; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	100.0
PHA02790	480	Kelch-like protein; Provisional	100.0
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	100.0
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	100.0
KOG4693	392	consensus Uncharacterized conserved protein, conta	100.0
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.96
KOG1230	521	consensus Protein containing repeated kelch motifs	99.96
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	99.96
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.95
KOG1230	521	consensus Protein containing repeated kelch motifs	99.95
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	99.94
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.84
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	99.84
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.4
PF13964	50	Kelch_6: Kelch motif	99.35
PF13964	50	Kelch_6: Kelch motif	99.34
KOG2437	723	consensus Muskelin [Signal transduction mechanisms	99.32
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.18
PF13415	49	Kelch_3: Galactose oxidase, central domain	99.08
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	99.06
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.04
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	99.03
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	99.01
PF13415	49	Kelch_3: Galactose oxidase, central domain	98.89
smart00612	47	Kelch Kelch domain.	98.89
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	98.87
smart00612	47	Kelch Kelch domain.	98.66
PF13854	42	Kelch_5: Kelch motif	98.65
PLN02772	398	guanylate kinase	98.53
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.5
PLN02772	398	guanylate kinase	98.5
PF13854	42	Kelch_5: Kelch motif	98.42
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.39
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	98.32
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	98.25
PF03089	337	RAG2: Recombination activating protein 2; InterPro	98.03
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.95
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	97.67
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.6
PF03089	337	RAG2: Recombination activating protein 2; InterPro	97.43
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.4
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.88
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	96.64
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.53
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.83
PF12768	281	Rax2: Cortical protein marker for cell polarity	95.58
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.56
KOG2055	514	consensus WD40 repeat protein [General function pr	95.37
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	95.3
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	94.76
PRK13684	334	Ycf48-like protein; Provisional	93.61
PRK13684	334	Ycf48-like protein; Provisional	93.37
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	93.1
KOG0310	487	consensus Conserved WD40 repeat-containing protein	92.68
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	92.54
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	92.2
KOG2055	514	consensus WD40 repeat protein [General function pr	91.59
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	91.54
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	90.51
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	89.38
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	88.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.59
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	88.38
KOG0310	487	consensus Conserved WD40 repeat-containing protein	87.58
PF12217	367	End_beta_propel: Catalytic beta propeller domain o	87.4
KOG0649	325	consensus WD40 repeat protein [General function pr	87.23
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	86.7
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	86.57
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	86.23
smart00284	255	OLF Olfactomedin-like domains.	85.97
PF09910	339	DUF2139: Uncharacterized protein conserved in arch	85.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	84.16
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	83.86
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	83.79
cd00094	194	HX Hemopexin-like repeats.; Hemopexin is a heme-bi	82.84
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	82.66
PRK11028	330	6-phosphogluconolactonase; Provisional	82.64
PRK00178	430	tolB translocation protein TolB; Provisional	82.4
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	82.06
KOG0296	399	consensus Angio-associated migratory cell protein	81.88
PRK05137	435	tolB translocation protein TolB; Provisional	81.5
PLN00033	398	photosystem II stability/assembly factor; Provisio	81.46
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	81.21
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	80.98
PLN00181	793	protein SPA1-RELATED; Provisional	80.72

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=1.2e-45  Score=359.32  Aligned_cols=253  Identities=21%  Similarity=0.351  Sum_probs=225.0

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      ..+..||+.+++|..+++||.+|..+++++++++||++||.+.....++++|+||+.+++|..+++|+.  +|..+++++
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~--~R~~~~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNT--KRSDFGVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccC--ccccceeEE
Confidence            367788889999999999999999999999999999999999544456889999999999999999999  589999999


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCC-CCCCccceEeeeec
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEVDHWSLAVKD  248 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~  248 (381)
                      ++++||++||.++...   ++++++|||.+++|+.+++|+.+|++|++++++++||++||.++.. ...+       +++
T Consensus       379 l~g~iYavGG~dg~~~---l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~s-------ve~  448 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKS---LNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNS-------VEC  448 (571)
T ss_pred             ECCEEEEEeccccccc---cccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccce-------EEE
Confidence            9999999999997654   7899999999999999999999999999999999999999988754 3444       455


Q ss_pred             CCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCC
Q 016877          249 GKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPK  327 (381)
Q Consensus       249 ~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~  327 (381)
                      |||.+++|+.++||+..|.++++++++++||++||+++..                 ....+..|| .+++|+.+++|+.
T Consensus       449 YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~-----------------~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  449 YDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTS-----------------ALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             EcCCCCceeecCCcccccccceEEEECCEEEEECCccCCC-----------------ccceEEEEcCCCCceeEcccCcc
Confidence            6799999999999999999999999999999999998632                 134489999 9999999999998


Q ss_pred             CCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877          328 PDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       328 ~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      +|...  ++++.+++||++||+++..       +++.++.|||++|+|+....
T Consensus       512 ~rs~~--g~~~~~~~ly~vGG~~~~~-------~l~~ve~ydp~~d~W~~~~~  555 (571)
T KOG4441|consen  512 PRSAV--GVVVLGGKLYAVGGFDGNN-------NLNTVECYDPETDTWTEVTE  555 (571)
T ss_pred             ccccc--cEEEECCEEEEEecccCcc-------ccceeEEcCCCCCceeeCCC
Confidence            88764  4589999999999988776       67899999999999998764

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-43  Score=344.99  Aligned_cols=258  Identities=16%  Similarity=0.185  Sum_probs=217.3

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      ..+++||+.+++|..+++||.+|..+++++++++|||+||.+......+++++||+.+++|..+++||.  +|..+++++
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~--~R~~~~~~~  349 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIK--NRCRFSLAV  349 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcc--hhhceeEEE
Confidence            367899999999999999999999999999999999999986444446789999999999999999998  478899999


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCC-CCCCc---------
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR-YTPEV---------  239 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~---------  239 (381)
                      ++++||++||.++..   ..+++++|||.+++|+.+++||.+|..+++++++++||++||.+... +.+..         
T Consensus       350 ~~g~IYviGG~~~~~---~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~  426 (557)
T PHA02713        350 IDDTIYAIGGQNGTN---VERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEE  426 (557)
T ss_pred             ECCEEEEECCcCCCC---CCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccc
Confidence            999999999987543   36889999999999999999999999999999999999999976421 00000         


Q ss_pred             -cceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CC-
Q 016877          240 -DHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-  316 (381)
Q Consensus       240 -~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~-  316 (381)
                       ......++.|||.+++|+.+++|+.+|..+++++++++||++||.++...                ..+.+++|| ++ 
T Consensus       427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~----------------~~~~ve~Ydp~~~  490 (557)
T PHA02713        427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN----------------VKTCIFRYNTNTY  490 (557)
T ss_pred             cccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc----------------cceeEEEecCCCC
Confidence             01123467888999999999999999988899999999999999863211                123478999 77 


Q ss_pred             CCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877          317 MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       317 ~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      ++|+.+++||.+|..  +++++++++||++||+++..          .+++||+++++|+.++.
T Consensus       491 ~~W~~~~~m~~~r~~--~~~~~~~~~iyv~Gg~~~~~----------~~e~yd~~~~~W~~~~~  542 (557)
T PHA02713        491 NGWELITTTESRLSA--LHTILHDNTIMMLHCYESYM----------LQDTFNVYTYEWNHICH  542 (557)
T ss_pred             CCeeEccccCccccc--ceeEEECCEEEEEeeeccee----------ehhhcCcccccccchhh
Confidence            799999999988875  45689999999999988632          58999999999998753

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=4.5e-40  Score=305.59  Aligned_cols=292  Identities=19%  Similarity=0.271  Sum_probs=213.8

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l  105 (381)
                      .|+++++++.|||+||.....                                       ....+.+++||+.+++|+++
T Consensus        25 ~h~~~~~~~~iyv~GG~~~~~---------------------------------------~~~~~~~~~yd~~~~~W~~~   65 (341)
T PLN02153         25 SHGIAVVGDKLYSFGGELKPN---------------------------------------EHIDKDLYVFDFNTHTWSIA   65 (341)
T ss_pred             cceEEEECCEEEEECCccCCC---------------------------------------CceeCcEEEEECCCCEEEEc
Confidence            689999999999999953211                                       01223678888899999998


Q ss_pred             cCCC-CCCC---CceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC---CCccceEEEEEeCCEEEEEc
Q 016877          106 KAAP-VPRL---DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVT  178 (381)
Q Consensus       106 ~~~p-~~r~---~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~~~~~~~~~~~iyv~G  178 (381)
                      ++++ .||.   .|+++.++++||||||.+.... ++++++||+++++|+.+++|+.   |.+|..|++++.+++|||+|
T Consensus        66 ~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~-~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~G  144 (341)
T PLN02153         66 PANGDVPRISCLGVRMVAVGTKLYIFGGRDEKRE-FSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFG  144 (341)
T ss_pred             CccCCCCCCccCceEEEEECCEEEEECCCCCCCc-cCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEEC
Confidence            8754 4443   6888999999999999875543 5789999999999999987721   44688999999999999999


Q ss_pred             CCCCCCC---CCCcceEEEEECCCCcEEeCCCCC---CCCcccEEEEECCEEEEEccCCCCCCC-CCccceEeeeecCCc
Q 016877          179 GQYGPQC---RGPTAHTFVLDTETKKWQDLPPLP---VPRYAPATQLWRGRLHVMGGSGENRYT-PEVDHWSLAVKDGKP  251 (381)
Q Consensus       179 G~~~~~~---~~~~~~~~~yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~lyv~GG~~~~~~~-~~~~~~~~~~~~~~~  251 (381)
                      |.+....   ...++++++||+++++|+.++++.   .+|..|++++++++|||+||....... .........++.||+
T Consensus       145 G~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~  224 (341)
T PLN02153        145 GVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDP  224 (341)
T ss_pred             CccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEc
Confidence            9864321   113578999999999999998654   789999999999999999997532100 000011123556779


Q ss_pred             cCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCC---
Q 016877          252 LEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS---  324 (381)
Q Consensus       252 ~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~---  324 (381)
                      .+++|+.+.+   +|..|..+++++++++||||||......        ........+.+++|.|| ++++|+.+..   
T Consensus       225 ~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~  296 (341)
T PLN02153        225 ASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDL--------KGHLGPGTLSNEGYALDTETLVWEKLGECGE  296 (341)
T ss_pred             CCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCcc--------ccccccccccccEEEEEcCccEEEeccCCCC
Confidence            9999999864   5777878899999999999999743210        00011223567899999 9999998863   


Q ss_pred             CCCCCCC--cceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcC
Q 016877          325 MPKPDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  371 (381)
Q Consensus       325 ~~~~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~  371 (381)
                      .+.||.+  ++++++..+++|||+||.++...      .++|+|+|+..
T Consensus       297 ~~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~------~~~~~~~~~~~  339 (341)
T PLN02153        297 PAMPRGWTAYTTATVYGKNGLLMHGGKLPTNE------RTDDLYFYAVN  339 (341)
T ss_pred             CCCCCccccccccccCCcceEEEEcCcCCCCc------cccceEEEecc
Confidence            2344444  33333344568999999976532      56899999864

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.1e-40  Score=321.38  Aligned_cols=239  Identities=18%  Similarity=0.312  Sum_probs=207.8

Q ss_pred             HhhheeEcCEEEEecCCC-CCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEE
Q 016877           26 ILGFALVADFFWASSSKF-TSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEK  104 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~-~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~  104 (381)
                      .+++++++|+||++||.+ +...++                                         .+++||+.+++|++
T Consensus       325 ~~~~~~~~~~lYv~GG~~~~~~~l~-----------------------------------------~ve~YD~~~~~W~~  363 (571)
T KOG4441|consen  325 RVGVAVLNGKLYVVGGYDSGSDRLS-----------------------------------------SVERYDPRTNQWTP  363 (571)
T ss_pred             cccEEEECCEEEEEccccCCCcccc-----------------------------------------eEEEecCCCCceec
Confidence            799999999999999988 555544                                         45555667778999


Q ss_pred             ccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877          105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQ  184 (381)
Q Consensus       105 l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~  184 (381)
                      +++|+.+|..++++++++.||++||.++... ++++|+|||.+++|+.+++|+.  +|..+++++.+++||++||.++..
T Consensus       364 ~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~-l~svE~YDp~~~~W~~va~m~~--~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  364 VAPMNTKRSDFGVAVLDGKLYAVGGFDGEKS-LNSVECYDPVTNKWTPVAPMLT--RRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             cCCccCccccceeEEECCEEEEEeccccccc-cccEEEecCCCCcccccCCCCc--ceeeeEEEEECCEEEEEcCcCCCc
Confidence            9999999999999999999999999997665 4679999999999999999998  589999999999999999998876


Q ss_pred             CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCC
Q 016877          185 CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR  264 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~  264 (381)
                      .  .++.+++|||.+++|+.+++|+.+|.++.+++++++||++||+++.....+       ++.|||.+++|+.+.+|+.
T Consensus       441 ~--~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~-------VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  441 N--CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSS-------VERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             c--ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccce-------EEEEcCCCCceeEcccCcc
Confidence            2  489999999999999999999999999999999999999999987322222       5667799999999999999


Q ss_pred             CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcce
Q 016877          265 GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (381)
Q Consensus       265 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~  334 (381)
                      .+....++.++++||++||+++..                 +++.+..|| ++++|+..+++...+...++
T Consensus       512 ~rs~~g~~~~~~~ly~vGG~~~~~-----------------~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~  565 (571)
T KOG4441|consen  512 PRSAVGVVVLGGKLYAVGGFDGNN-----------------NLNTVECYDPETDTWTEVTEPESGRGGAGV  565 (571)
T ss_pred             ccccccEEEECCEEEEEecccCcc-----------------ccceeEEcCCCCCceeeCCCccccccCcce
Confidence            999889999999999999987654                 466789999 99999999985555544433

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=2e-38  Score=305.07  Aligned_cols=317  Identities=16%  Similarity=0.236  Sum_probs=238.9

Q ss_pred             heeEcCEEEEecCCCCCcccceeeee--eCCC----ce-eeecC----CCCCCCceeEEeee-cccccccc-----cCcc
Q 016877           29 FALVADFFWASSSKFTSSYLNIASNW--SPYH----NS-IILPN----NGPQKGENIGVKTK-KDVVPKRI-----LPAT   91 (381)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~--d~~~----~~-~~~p~----~~~~~~~~~~~~~~-~~~~~~~~-----~~~~   91 (381)
                      +.+.+++|+.|+|..+. .++.+..|  +|.+    ++ ..+.+    +.||..|+++..++ ++..++..     ..+.
T Consensus       116 f~~~~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~  194 (470)
T PLN02193        116 FVLQGGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKH  194 (470)
T ss_pred             EEEcCCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCc
Confidence            44569999999997654 36666666  7655    44 44433    56899999887766 77777642     3346


Q ss_pred             eEeecCCCCCeEEccC---CCC-CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CCccceEE
Q 016877           92 FQDLPAPELKWEKMKA---APV-PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLG  166 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~---~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~  166 (381)
                      +++||+.+++|+.+++   +|. +|..++++.++++|||+||.+... .++++++||+.+++|+++++++. |.+|..|+
T Consensus       195 v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~  273 (470)
T PLN02193        195 LYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHS  273 (470)
T ss_pred             EEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceE
Confidence            9999999999998765   343 356788899999999999987644 45789999999999999988732 34688899


Q ss_pred             EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEEECCEEEEEccCCCCCCCCCccceE
Q 016877          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      +++.+++|||+||.+...   .++++++||+.+++|+.+++   +|.+|..|++++++++||++||.++.. .       
T Consensus       274 ~~~~~~~iYv~GG~~~~~---~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~-------  342 (470)
T PLN02193        274 MAADEENVYVFGGVSATA---RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-V-------  342 (470)
T ss_pred             EEEECCEEEEECCCCCCC---CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-c-------
Confidence            999999999999987643   36889999999999999874   678899999999999999999976421 1       


Q ss_pred             eeeecCCccCCceEEecCC---CCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCe
Q 016877          244 LAVKDGKPLEKEWRTEIPI---PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW  319 (381)
Q Consensus       244 ~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W  319 (381)
                      ..++.||+.+++|+.++++   |.+|..++++.++++|||+||......        ........+.++++.|| .+++|
T Consensus       343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~--------~~~~~~~~~~ndv~~~D~~t~~W  414 (470)
T PLN02193        343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDP--------LAHVGPGQLTDGTFALDTETLQW  414 (470)
T ss_pred             CceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCcc--------ccccCccceeccEEEEEcCcCEE
Confidence            2244556899999998654   777777889999999999999864210        00011223577899999 99999


Q ss_pred             EEcCCC------CCCCCCcceEEEEEC--CEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877          320 KVLPSM------PKPDSHIEFAWVLVN--NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       320 ~~i~~~------~~~~~~~~~~~~~~~--~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                      +.++.+      |.+|..++++++.++  +.|+++||.+....      +++|+|+|++++
T Consensus       415 ~~~~~~~~~~~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~------~~~D~~~~~~~~  469 (470)
T PLN02193        415 ERLDKFGEEEETPSSRGWTASTTGTIDGKKGLVMHGGKAPTND------RFDDLFFYGIDS  469 (470)
T ss_pred             EEcccCCCCCCCCCCCccccceeeEEcCCceEEEEcCCCCccc------cccceEEEecCC
Confidence            998754      455555443333343  45999999976543      688999998865

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=7.6e-39  Score=298.35  Aligned_cols=264  Identities=19%  Similarity=0.237  Sum_probs=188.1

Q ss_pred             eEeec--CCCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCCCC-----CcccceEEEeCCCCeEecCCCCCCCCccc
Q 016877           92 FQDLP--APELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHS  163 (381)
Q Consensus        92 ~~~~~--~~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~  163 (381)
                      +++||  +.+++|.++++|| .+|..+++++++++|||+||.....     ..++++|+||+.+++|+.++. +.|+.|.
T Consensus        31 ~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~-~~p~~~~  109 (346)
T TIGR03547        31 WYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT-RSPVGLL  109 (346)
T ss_pred             eEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC-CCCCccc
Confidence            34444  3678999999999 5899999999999999999985422     245789999999999999974 3344566


Q ss_pred             eEEEE-EeCCEEEEEcCCCCCCC-------------------------------CCCcceEEEEECCCCcEEeCCCCCC-
Q 016877          164 HLGMV-TDGRYIYVVTGQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPV-  210 (381)
Q Consensus       164 ~~~~~-~~~~~iyv~GG~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~p~-  210 (381)
                      .++++ +.+++||++||.+....                               ....+++++|||++++|+.+++||. 
T Consensus       110 ~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~  189 (346)
T TIGR03547       110 GASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFL  189 (346)
T ss_pred             ceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCC
Confidence            66665 79999999999763210                               0013789999999999999999996 


Q ss_pred             CCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC-------cceeEEEeCCEEEEEcc
Q 016877          211 PRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG-------PHRACVVVDDRLLVIGG  283 (381)
Q Consensus       211 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~-------~~~~~~~~~~~l~v~GG  283 (381)
                      +|..+++++++++|||+||...... ...+.   .++++|+.+++|+.+++||..+       ..+.+++++++||++||
T Consensus       190 ~r~~~~~~~~~~~iyv~GG~~~~~~-~~~~~---~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG  265 (346)
T TIGR03547       190 GTAGSAIVHKGNKLLLINGEIKPGL-RTAEV---KQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGG  265 (346)
T ss_pred             cCCCceEEEECCEEEEEeeeeCCCc-cchhe---EEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeec
Confidence            7899999999999999999754321 11222   2345568889999999887644       23446789999999999


Q ss_pred             CCCCCCCCC--CCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeee
Q 016877          284 QEGDFMAKP--GSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMV  360 (381)
Q Consensus       284 ~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~  360 (381)
                      .+.......  ....+.......  ...+.+|| ++++|+.+++||.+|..  +++++++++|||+||.+..+.      
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~yd~~~~~W~~~~~lp~~~~~--~~~~~~~~~iyv~GG~~~~~~------  335 (346)
T TIGR03547       266 ANFPGAQENYKNGKLYAHEGLIK--AWSSEVYALDNGKWSKVGKLPQGLAY--GVSVSWNNGVLLIGGENSGGK------  335 (346)
T ss_pred             CCCCCchhhhhcCCccccCCCCc--eeEeeEEEecCCcccccCCCCCCcee--eEEEEcCCEEEEEeccCCCCC------
Confidence            863210000  000000000000  12245555 78999999999988754  456889999999999876543      


Q ss_pred             eecceEEEEc
Q 016877          361 LVGEIFQFNL  370 (381)
Q Consensus       361 ~~~~v~~yd~  370 (381)
                      .+++|+.|-.
T Consensus       336 ~~~~v~~~~~  345 (346)
T TIGR03547       336 AVTDVYLLSW  345 (346)
T ss_pred             EeeeEEEEEe
Confidence            5667877643

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02153 epithiospecifier protein

Probab=100.00  E-value=9.4e-39  Score=296.76  Aligned_cols=268  Identities=19%  Similarity=0.274  Sum_probs=203.1

Q ss_pred             CCCCCeEEccC----CCCCCCCceEEEECCEEEEEecCCCC-CCcccceEEEeCCCCeEecCCCCC-CCCc-cceEEEEE
Q 016877           97 APELKWEKMKA----APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMP-REMA-HSHLGMVT  169 (381)
Q Consensus        97 ~~~~~W~~l~~----~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~~-~~~~-r~~~~~~~  169 (381)
                      +.+.+|.++.+    +|.||..|++++++++|||+||.... ....+++++||+.+++|+.+++++ .|+. +..+++++
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~   83 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA   83 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence            35678999976    79999999999999999999998643 334578999999999999988775 3322 34688899


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC-----CCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-----PVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-----p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ++++||+|||.+...   .++++++||+++++|+.+++|     |.+|..|++++++++|||+||............+ .
T Consensus        84 ~~~~iyv~GG~~~~~---~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~-~  159 (341)
T PLN02153         84 VGTKLYIFGGRDEKR---EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERF-R  159 (341)
T ss_pred             ECCEEEEECCCCCCC---ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCccc-c
Confidence            999999999987643   368999999999999999877     8899999999999999999998643322211112 2


Q ss_pred             eeecCCccCCceEEecCCC---CCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeE
Q 016877          245 AVKDGKPLEKEWRTEIPIP---RGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK  320 (381)
Q Consensus       245 ~~~~~~~~~~~W~~~~~~p---~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~  320 (381)
                      .++.||+.+++|+.++++.   ..|..+++++++++||++||........         .......++++.|| .+++|+
T Consensus       160 ~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~g---------G~~~~~~~~v~~yd~~~~~W~  230 (341)
T PLN02153        160 TIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPG---------GKSDYESNAVQFFDPASGKWT  230 (341)
T ss_pred             eEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccC---------CccceecCceEEEEcCCCcEE
Confidence            3556779999999987653   5677778889999999999975321000         00011256799999 999999


Q ss_pred             EcCC---CCCCCCCcceEEEEECCEEEEEcccccccCC--ceeeeeecceEEEEcCCCceEEee
Q 016877          321 VLPS---MPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT--TKKMVLVGEIFQFNLNTLVAVLNA  379 (381)
Q Consensus       321 ~i~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~--~~~~~~~~~v~~yd~~~~~W~~i~  379 (381)
                      .++.   +|.+|.  .+++++++++|||+||.......  ...+.+.+++|+||+++++|+.+.
T Consensus       231 ~~~~~g~~P~~r~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~  292 (341)
T PLN02153        231 EVETTGAKPSARS--VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLG  292 (341)
T ss_pred             eccccCCCCCCcc--eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEecc
Confidence            9875   455554  45678999999999997532100  011225679999999999999875

>PLN02193 nitrile-specifier protein

Probab=100.00  E-value=3.5e-38  Score=303.43  Aligned_cols=259  Identities=23%  Similarity=0.294  Sum_probs=204.0

Q ss_pred             eEeecCCC----CCeEEccC---CCCCCCCceEEEECCEEEEEecCCCC-CCcccceEEEeCCCCeEecCCCCC-CCC-c
Q 016877           92 FQDLPAPE----LKWEKMKA---APVPRLDGAAIQIKNLLYVFAGYGSI-DYVHSHVDIYNFTDNTWGGRFDMP-REM-A  161 (381)
Q Consensus        92 ~~~~~~~~----~~W~~l~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~yd~~~~~W~~~~~~~-~~~-~  161 (381)
                      ++.+++.+    ++|.++++   +|.||..|+++.++++|||+||.... ....+++|+||+++++|+.++.+. .|. +
T Consensus       139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~  218 (470)
T PLN02193        139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS  218 (470)
T ss_pred             EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence            33446544    79999876   68899999999999999999997543 334467999999999999876542 232 3


Q ss_pred             cceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC---CCCCcccEEEEECCEEEEEccCCCCCCCCC
Q 016877          162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL---PVPRYAPATQLWRGRLHVMGGSGENRYTPE  238 (381)
Q Consensus       162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~  238 (381)
                      |..+++++++++||||||.+...   .++++++||+.+++|++++++   |.+|..|++++++++|||+||.........
T Consensus       219 ~~~~~~v~~~~~lYvfGG~~~~~---~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~  295 (470)
T PLN02193        219 CLGVRMVSIGSTLYVFGGRDASR---QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKT  295 (470)
T ss_pred             ccceEEEEECCEEEEECCCCCCC---CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcce
Confidence            56788999999999999987643   378999999999999999887   889999999999999999999875433332


Q ss_pred             ccceEeeeecCCccCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-
Q 016877          239 VDHWSLAVKDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-  314 (381)
Q Consensus       239 ~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-  314 (381)
                             ++.||+.+++|+.+++   +|..|..+++++++++||++||.++.                  ..++++.|| 
T Consensus       296 -------~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~------------------~~~dv~~yD~  350 (470)
T PLN02193        296 -------LDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC------------------EVDDVHYYDP  350 (470)
T ss_pred             -------EEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC------------------ccCceEEEEC
Confidence                   3445688999998764   56667777888999999999997532                  246799999 


Q ss_pred             CCCCeEEcCCC---CCCCCCcceEEEEECCEEEEEcccccccCCc--eeeeeecceEEEEcCCCceEEeec
Q 016877          315 DEMKWKVLPSM---PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTT--KKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       315 ~~~~W~~i~~~---~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~--~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      .+++|+.++.+   |.+|..  ++++.++++|||+||........  ..+.+.+++|+||+++++|+.+..
T Consensus       351 ~t~~W~~~~~~g~~P~~R~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~  419 (470)
T PLN02193        351 VQDKWTQVETFGVRPSERSV--FASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDK  419 (470)
T ss_pred             CCCEEEEeccCCCCCCCcce--eEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEccc
Confidence            89999999765   556554  55689999999999986422111  112367899999999999998864

>PHA02713 hypothetical protein; Provisional

Probab=100.00  E-value=1.7e-38  Score=310.53  Aligned_cols=261  Identities=11%  Similarity=0.141  Sum_probs=214.8

Q ss_pred             EEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEeee-cccccccc----cCcceEeecCCCCCeEEccC
Q 016877           35 FFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTK-KDVVPKRI----LPATFQDLPAPELKWEKMKA  107 (381)
Q Consensus        35 ~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~W~~l~~  107 (381)
                      .|++.||... .....+++|||.+++ ..+++ +.+|..++++..++ ++..|+..    ..+.+++||+.+++|..+++
T Consensus       259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~  337 (557)
T PHA02713        259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP  337 (557)
T ss_pred             EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence            4566665222 123468999999999 77777 66777888887776 88877742    23568999999999999999


Q ss_pred             CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC--
Q 016877          108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC--  185 (381)
Q Consensus       108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~--  185 (381)
                      ||.+|..+++++++++||++||.++.. ..+++++|||.+++|..+++||.+  |..+++++++++||++||.++...  
T Consensus       338 m~~~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~mp~~--r~~~~~~~~~g~IYviGG~~~~~~~~  414 (557)
T PHA02713        338 MIKNRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPDMPIA--LSSYGMCVLDQYIYIIGGRTEHIDYT  414 (557)
T ss_pred             CcchhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCCCCcc--cccccEEEECCEEEEEeCCCcccccc
Confidence            999999999999999999999987544 356799999999999999999985  677888999999999999864310  


Q ss_pred             -------------CCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCcc
Q 016877          186 -------------RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPL  252 (381)
Q Consensus       186 -------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~  252 (381)
                                   ...++.+++|||++++|+.+++|+.+|..+++++++++|||+||.++...      ....++.|||.
T Consensus       415 ~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~------~~~~ve~Ydp~  488 (557)
T PHA02713        415 SVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKN------VKTCIFRYNTN  488 (557)
T ss_pred             cccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCc------cceeEEEecCC
Confidence                         01257899999999999999999999999999999999999999764211      11235678899


Q ss_pred             C-CceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCC
Q 016877          253 E-KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM  325 (381)
Q Consensus       253 ~-~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~  325 (381)
                      + ++|+.+++||..|..+++++++++||++||+++.                    ..+.+|| .+++|+.+++.
T Consensus       489 ~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~--------------------~~~e~yd~~~~~W~~~~~~  543 (557)
T PHA02713        489 TYNGWELITTTESRLSALHTILHDNTIMMLHCYESY--------------------MLQDTFNVYTYEWNHICHQ  543 (557)
T ss_pred             CCCCeeEccccCcccccceeEEECCEEEEEeeecce--------------------eehhhcCcccccccchhhh
Confidence            9 8999999999999999999999999999998742                    1478899 99999998764

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=1.4e-37  Score=292.12  Aligned_cols=266  Identities=18%  Similarity=0.183  Sum_probs=191.3

Q ss_pred             CCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCC-C----CCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-e
Q 016877           98 PELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGS-I----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-D  170 (381)
Q Consensus        98 ~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~-~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~  170 (381)
                      .+++|.+++++| .+|.+++++.++++|||+||... .    ...++++|+||+.+++|+.++++ .|+.+..+++++ .
T Consensus        60 ~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-~p~~~~~~~~~~~~  138 (376)
T PRK14131         60 PSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-SPVGLAGHVAVSLH  138 (376)
T ss_pred             CCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC-CCCcccceEEEEee
Confidence            357899999998 58999999999999999999864 1    13457899999999999999863 244566666665 8


Q ss_pred             CCEEEEEcCCCCCC-------------------------------CCCCcceEEEEECCCCcEEeCCCCCC-CCcccEEE
Q 016877          171 GRYIYVVTGQYGPQ-------------------------------CRGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQ  218 (381)
Q Consensus       171 ~~~iyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~  218 (381)
                      +++||++||.....                               .....+++++||+.+++|+.++++|. +|..++++
T Consensus       139 ~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v  218 (376)
T PRK14131        139 NGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVV  218 (376)
T ss_pred             CCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEE
Confidence            99999999975310                               00124789999999999999999996 78889999


Q ss_pred             EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCc--------ceeEEEeCCEEEEEccCCCCCCC
Q 016877          219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMA  290 (381)
Q Consensus       219 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~--------~~~~~~~~~~l~v~GG~~~~~~~  290 (381)
                      .++++|||+||...... ...+.|.   +++|+.+++|+.+++||..+.        ++.+++++++||++||.+.....
T Consensus       219 ~~~~~iYv~GG~~~~~~-~~~~~~~---~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~  294 (376)
T PRK14131        219 IKGNKLWLINGEIKPGL-RTDAVKQ---GKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGAR  294 (376)
T ss_pred             EECCEEEEEeeeECCCc-CChhheE---EEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCCh
Confidence            99999999999753321 2233332   345788999999998876542        22356789999999998642100


Q ss_pred             C-CCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEE
Q 016877          291 K-PGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQF  368 (381)
Q Consensus       291 ~-~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~y  368 (381)
                      . .............. ...+..|| ++++|+.+++||.+|..+  +++.++++|||+||......      ..+++++|
T Consensus       295 ~~~~~~~~~~~~~~~~-~~~~e~yd~~~~~W~~~~~lp~~r~~~--~av~~~~~iyv~GG~~~~~~------~~~~v~~~  365 (376)
T PRK14131        295 ENYQNGKLYAHEGLKK-SWSDEIYALVNGKWQKVGELPQGLAYG--VSVSWNNGVLLIGGETAGGK------AVSDVTLL  365 (376)
T ss_pred             hhhhcCCcccccCCcc-eeehheEEecCCcccccCcCCCCccce--EEEEeCCEEEEEcCCCCCCc------EeeeEEEE
Confidence            0 00000000000000 11244566 789999999999988654  56899999999999865432      56799999


Q ss_pred             EcCCCceEE
Q 016877          369 NLNTLVAVL  377 (381)
Q Consensus       369 d~~~~~W~~  377 (381)
                      +++.+.+..
T Consensus       366 ~~~~~~~~~  374 (376)
T PRK14131        366 SWDGKKLTV  374 (376)
T ss_pred             EEcCCEEEE
Confidence            999888764

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=1.5e-37  Score=286.60  Aligned_cols=284  Identities=20%  Similarity=0.257  Sum_probs=203.3

Q ss_pred             HHHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeec-CC-CC
Q 016877           23 FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLP-AP-EL  100 (381)
Q Consensus        23 ~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  100 (381)
                      .++-|.+++++++||++||.+....        +                       ....+.......++.++ +. +.
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~--------~-----------------------~~~~g~~~~~~~v~~~~~~~~~~   51 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPED--------P-----------------------LAEGGKKKNYKGIYIAKDENSNL   51 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCC--------c-----------------------hhhCCcEEeeeeeEEEecCCCce
Confidence            3556889999999999999654220        0                       00011112223455553 33 23


Q ss_pred             CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeE----ecCCCCCCCCccceEEEEEeCCEEEE
Q 016877          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW----GGRFDMPREMAHSHLGMVTDGRYIYV  176 (381)
Q Consensus       101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W----~~~~~~~~~~~r~~~~~~~~~~~iyv  176 (381)
                      +|..+++||.+|..+++++++++||++||.+.... ++++++||+.+++|    +.+++||.+  |..+++++++++||+
T Consensus        52 ~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~-~~~v~~~d~~~~~w~~~~~~~~~lp~~--~~~~~~~~~~~~iYv  128 (323)
T TIGR03548        52 KWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSER-FSSVYRITLDESKEELICETIGNLPFT--FENGSACYKDGTLYV  128 (323)
T ss_pred             eEEEcccCCccccceEEEEECCEEEEEcCCCCCCC-ceeEEEEEEcCCceeeeeeEcCCCCcC--ccCceEEEECCEEEE
Confidence            79999999999998888999999999999876444 57899999999998    678888874  667888999999999


Q ss_pred             EcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877          177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE  255 (381)
Q Consensus       177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (381)
                      +||.....   ..+++++||+.+++|+.++++| .+|..+++++++++|||+||.+....        .+++.||+.+++
T Consensus       129 ~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~--------~~~~~yd~~~~~  197 (323)
T TIGR03548       129 GGGNRNGK---PSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAY--------TDGYKYSPKKNQ  197 (323)
T ss_pred             EeCcCCCc---cCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccc--------cceEEEecCCCe
Confidence            99975432   3789999999999999999988 58999999999999999999764321        123566799999


Q ss_pred             eEEecCC-----CCCCccee-EEEeCCEEEEEccCCCCCCCC----------CCCCccc-----cccCceeecCceeEeC
Q 016877          256 WRTEIPI-----PRGGPHRA-CVVVDDRLLVIGGQEGDFMAK----------PGSPIFK-----CSRRNEVVYDDVYMLD  314 (381)
Q Consensus       256 W~~~~~~-----p~~~~~~~-~~~~~~~l~v~GG~~~~~~~~----------~~~~~~~-----~~~~~~~~~~~v~~yd  314 (381)
                      |+.++++     |+.+..++ ++..+++||++||.+.....+          ..++...     .......+.++++.||
T Consensus       198 W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  277 (323)
T TIGR03548       198 WQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYN  277 (323)
T ss_pred             eEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEE
Confidence            9998765     33333333 445579999999986421000          0000000     0000011246799999


Q ss_pred             -CCCCeEEcCCCC-CCCCCcceEEEEECCEEEEEccccccc
Q 016877          315 -DEMKWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKH  353 (381)
Q Consensus       315 -~~~~W~~i~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~  353 (381)
                       .+++|+.++++| .+|.  +++++.++++||++||....+
T Consensus       278 ~~~~~W~~~~~~p~~~r~--~~~~~~~~~~iyv~GG~~~pg  316 (323)
T TIGR03548       278 VRTGKWKSIGNSPFFARC--GAALLLTGNNIFSINGELKPG  316 (323)
T ss_pred             CCCCeeeEcccccccccC--chheEEECCEEEEEeccccCC
Confidence             899999999876 3444  456799999999999986544

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=2.4e-37  Score=304.43  Aligned_cols=255  Identities=21%  Similarity=0.291  Sum_probs=210.9

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      .+..|++.+++|..+++.|. +..+++++++++||++||.+......+++++||+.+++|..+++||.|  |..++++..
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~--R~~~~~~~~  341 (534)
T PHA03098        265 NYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP--RKNPGVTVF  341 (534)
T ss_pred             eeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc--cccceEEEE
Confidence            35578888899998877664 445688899999999999987666667899999999999999999874  778899999


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      +++||++||.+...   ..+++++||+.+++|+.++++|.+|..|++++++++||++||.......      .-.++.||
T Consensus       342 ~~~lyv~GG~~~~~---~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~------~~~v~~yd  412 (534)
T PHA03098        342 NNRIYVIGGIYNSI---SLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDEL------LKTVECFS  412 (534)
T ss_pred             CCEEEEEeCCCCCE---ecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcc------cceEEEEe
Confidence            99999999987433   3788999999999999999999999999999999999999997532111      12345567


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCC
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~  329 (381)
                      +.+++|+.++++|.++..++++..+++||++||......              ....+.++.|| .+++|+.+++++.+|
T Consensus       413 ~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~~~~W~~~~~~~~~r  478 (534)
T PHA03098        413 LNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN--------------IKVYNIVESYNPVTNKWTELSSLNFPR  478 (534)
T ss_pred             CCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC--------------CcccceEEEecCCCCceeeCCCCCccc
Confidence            999999999999999988899999999999999864311              01134599999 899999999998887


Q ss_pred             CCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       330 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      ..+  +++..+++||++||.+...       ..+++++||+++++|..++.
T Consensus       479 ~~~--~~~~~~~~iyv~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~  520 (534)
T PHA03098        479 INA--SLCIFNNKIYVVGGDKYEY-------YINEIEVYDDKTNTWTLFCK  520 (534)
T ss_pred             ccc--eEEEECCEEEEEcCCcCCc-------ccceeEEEeCCCCEEEecCC
Confidence            654  4577899999999987543       35689999999999998765

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=2.2e-35  Score=284.82  Aligned_cols=210  Identities=18%  Similarity=0.305  Sum_probs=177.7

Q ss_pred             EEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      ++.+++.||++||.+... ..+++++||+.+++|..+++|+.|  |..+++++.+++||++||.++      .+.+++||
T Consensus       267 ~~~~~~~lyviGG~~~~~-~~~~v~~Ydp~~~~W~~~~~m~~~--r~~~~~v~~~~~iYviGG~~~------~~sve~yd  337 (480)
T PHA02790        267 STHVGEVVYLIGGWMNNE-IHNNAIAVNYISNNWIPIPPMNSP--RLYASGVPANNKLYVVGGLPN------PTSVERWF  337 (480)
T ss_pred             eEEECCEEEEEcCCCCCC-cCCeEEEEECCCCEEEECCCCCch--hhcceEEEECCEEEEECCcCC------CCceEEEE
Confidence            455899999999986543 456799999999999999999884  677888899999999999753      25689999


Q ss_pred             CCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCC
Q 016877          197 TETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD  276 (381)
Q Consensus       197 ~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  276 (381)
                      +.+++|+.+++||.+|..+++++++++||++||....  ..       .++.|||.+++|+.+++|+.++..++++++++
T Consensus       338 p~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~-------~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~  408 (480)
T PHA02790        338 HGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DT-------TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGR  408 (480)
T ss_pred             CCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Cc-------cEEEEeCCCCEEEeCCCCCCccccceEEEECC
Confidence            9999999999999999999999999999999997532  12       23455799999999999999988888999999


Q ss_pred             EEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCC
Q 016877          277 RLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT  355 (381)
Q Consensus       277 ~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~  355 (381)
                      +||++||.                         +..|| ++++|+.+++|+.+|..+  ++++++++||++||.+...  
T Consensus       409 ~IYv~GG~-------------------------~e~ydp~~~~W~~~~~m~~~r~~~--~~~v~~~~IYviGG~~~~~--  459 (480)
T PHA02790        409 RLFLVGRN-------------------------AEFYCESSNTWTLIDDPIYPRDNP--ELIIVDNKLLLIGGFYRGS--  459 (480)
T ss_pred             EEEEECCc-------------------------eEEecCCCCcEeEcCCCCCCcccc--EEEEECCEEEEECCcCCCc--
Confidence            99999984                         34566 899999999999888764  5689999999999987432  


Q ss_pred             ceeeeeecceEEEEcCCCceEEe
Q 016877          356 TKKMVLVGEIFQFNLNTLVAVLN  378 (381)
Q Consensus       356 ~~~~~~~~~v~~yd~~~~~W~~i  378 (381)
                           ..+.+++||+++++|+.-
T Consensus       460 -----~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        460 -----YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             -----ccceEEEEECCCCeEEec
Confidence                 345799999999999763

>PHA03098 kelch-like protein; Provisional

Probab=100.00  E-value=1.8e-35  Score=291.15  Aligned_cols=239  Identities=15%  Similarity=0.309  Sum_probs=198.1

Q ss_pred             hhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEcc
Q 016877           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMK  106 (381)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~  106 (381)
                      |+++++++.||++||.+....                                        ....++.||+.+++|.+++
T Consensus       288 ~~~~~~~~~lyv~GG~~~~~~----------------------------------------~~~~v~~yd~~~~~W~~~~  327 (534)
T PHA03098        288 FGSVVLNNVIYFIGGMNKNNL----------------------------------------SVNSVVSYDTKTKSWNKVP  327 (534)
T ss_pred             ceEEEECCEEEEECCCcCCCC----------------------------------------eeccEEEEeCCCCeeeECC
Confidence            578888999999998543211                                        1236788999999999999


Q ss_pred             CCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCC
Q 016877          107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR  186 (381)
Q Consensus       107 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~  186 (381)
                      ++|.+|..++++.++++||++||.+... ..+++++||+.+++|+.++++|.|  |..++++..+++||++||...... 
T Consensus       328 ~~~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~lp~~--r~~~~~~~~~~~iYv~GG~~~~~~-  403 (534)
T PHA03098        328 ELIYPRKNPGVTVFNNRIYVIGGIYNSI-SLNTVESWKPGESKWREEPPLIFP--RYNPCVVNVNNLIYVIGGISKNDE-  403 (534)
T ss_pred             CCCcccccceEEEECCEEEEEeCCCCCE-ecceEEEEcCCCCceeeCCCcCcC--CccceEEEECCEEEEECCcCCCCc-
Confidence            9999999999999999999999987433 457799999999999999999884  788889999999999999754432 


Q ss_pred             CCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC
Q 016877          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG  266 (381)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~  266 (381)
                       .++++++||+.+++|+.++++|.+|..|++++++++||++||......   ...+. .++.||+.+++|+.++++|.++
T Consensus       404 -~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~---~~~~~-~v~~yd~~~~~W~~~~~~~~~r  478 (534)
T PHA03098        404 -LLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDN---IKVYN-IVESYNPVTNKWTELSSLNFPR  478 (534)
T ss_pred             -ccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCC---Ccccc-eEEEecCCCCceeeCCCCCccc
Confidence             368999999999999999999999999999999999999999764321   11122 2677889999999999998888


Q ss_pred             cceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCC
Q 016877          267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH  331 (381)
Q Consensus       267 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~  331 (381)
                      ..++++.++++||++||.+...                 ..++++.|| ++++|+.++.+|.....
T Consensus       479 ~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~~~~  527 (534)
T PHA03098        479 INASLCIFNNKIYVVGGDKYEY-----------------YINEIEVYDDKTNTWTLFCKFPKVIGS  527 (534)
T ss_pred             ccceEEEECCEEEEEcCCcCCc-----------------ccceeEEEeCCCCEEEecCCCcccccc
Confidence            8888899999999999987432                 246799999 99999999887765443

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=4.4e-36  Score=250.82  Aligned_cols=272  Identities=17%  Similarity=0.308  Sum_probs=211.8

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l  105 (381)
                      -|+++.|+++||.|||.=.+..      ||-  +                            ..-.+..+|..+-+|+++
T Consensus        16 NHAavaVG~riYSFGGYCsGed------y~~--~----------------------------~piDVH~lNa~~~RWtk~   59 (392)
T KOG4693|consen   16 NHAAVAVGSRIYSFGGYCSGED------YDA--K----------------------------DPIDVHVLNAENYRWTKM   59 (392)
T ss_pred             cceeeeecceEEecCCcccccc------ccc--C----------------------------CcceeEEeeccceeEEec
Confidence            7999999999999999332221      110  0                            011345555556666665


Q ss_pred             cC-------------CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeC
Q 016877          106 KA-------------APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDG  171 (381)
Q Consensus       106 ~~-------------~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~  171 (381)
                      ++             .|..|.+|+++.+++++||.||.+.....-+.+++||++++.|.+..-- -.|.+|.+|++++.+
T Consensus        60 pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g  139 (392)
T KOG4693|consen   60 PPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG  139 (392)
T ss_pred             CcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEEC
Confidence            43             5678999999999999999999988666667899999999999984311 113379999999999


Q ss_pred             CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCC--CCCCCccceEeee
Q 016877          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGEN--RYTPEVDHWSLAV  246 (381)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~~~~~~~~~  246 (381)
                      +.+|||||+..... ..+++++.+|..|.+|+.+.   ..|.-|..|++.++++.+|||||..+.  .+-...+.|.-.+
T Consensus       140 n~MyiFGGye~~a~-~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i  218 (392)
T KOG4693|consen  140 NQMYIFGGYEEDAQ-RFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTI  218 (392)
T ss_pred             cEEEEecChHHHHH-hhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhccee
Confidence            99999999866532 34789999999999999986   456778999999999999999998653  2333455666566


Q ss_pred             ecCCccCCceEEecC---CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877          247 KDGKPLEKEWRTEIP---IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (381)
Q Consensus       247 ~~~~~~~~~W~~~~~---~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i  322 (381)
                      ..+|..+..|...++   .|.+|.+|+..+++++||+|||+++.-               ..-.+|+|+|| .+..|+.|
T Consensus       219 ~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~l---------------n~HfndLy~FdP~t~~W~~I  283 (392)
T KOG4693|consen  219 MALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTL---------------NVHFNDLYCFDPKTSMWSVI  283 (392)
T ss_pred             EEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhh---------------hhhhcceeecccccchheee
Confidence            667789999998754   578888999999999999999998652               23478999999 89999988


Q ss_pred             CC---CCCCCCCcceEEEEECCEEEEEccccc
Q 016877          323 PS---MPKPDSHIEFAWVLVNNSIVIVGGTTE  351 (381)
Q Consensus       323 ~~---~~~~~~~~~~~~~~~~~~l~v~GG~~~  351 (381)
                      ..   -|.+|.+.  ++++.++++|+|||...
T Consensus       284 ~~~Gk~P~aRRRq--C~~v~g~kv~LFGGTsP  313 (392)
T KOG4693|consen  284 SVRGKYPSARRRQ--CSVVSGGKVYLFGGTSP  313 (392)
T ss_pred             eccCCCCCcccce--eEEEECCEEEEecCCCC
Confidence            53   47777774  35899999999999764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=100.00  E-value=1.5e-35  Score=276.16  Aligned_cols=255  Identities=20%  Similarity=0.292  Sum_probs=189.8

Q ss_pred             ccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeC--CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCC
Q 016877          105 MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNF--TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG  182 (381)
Q Consensus       105 l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~  182 (381)
                      +++||.+|..+++++++++|||+||...     +++++||+  .+++|..+++||.. +|..+++++++++||++||...
T Consensus         1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~R~~~~~~~~~~~iYv~GG~~~   74 (346)
T TIGR03547         1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG-----TSWYKLDLKKPSKGWQKIADFPGG-PRNQAVAAAIDGKLYVFGGIGK   74 (346)
T ss_pred             CCCCCccccCceEEEECCEEEEEccccC-----CeeEEEECCCCCCCceECCCCCCC-CcccceEEEECCEEEEEeCCCC
Confidence            4789999999888899999999999742     46899996  57899999999842 4788899999999999999854


Q ss_pred             CC---CCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEE-EECCEEEEEccCCCCCC----------CCCc--------
Q 016877          183 PQ---CRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQ-LWRGRLHVMGGSGENRY----------TPEV--------  239 (381)
Q Consensus       183 ~~---~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~-~~~~~lyv~GG~~~~~~----------~~~~--------  239 (381)
                      ..   ....++++|+||+.+++|+.++ ++|.+|..++++ +++++||++||.+...+          ....        
T Consensus        75 ~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (346)
T TIGR03547        75 ANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIA  154 (346)
T ss_pred             CCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHH
Confidence            22   1123688999999999999997 567778888777 79999999999864210          0000        


Q ss_pred             ---------cceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 016877          240 ---------DHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (381)
Q Consensus       240 ---------~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (381)
                               ..+...++.|||.+++|+.+++||. .+..++++.++++||++||......                ...+
T Consensus       155 ~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~----------------~~~~  218 (346)
T TIGR03547       155 AYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGL----------------RTAE  218 (346)
T ss_pred             HHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCc----------------cchh
Confidence                     0112346778899999999999985 5777788899999999999753210                1223


Q ss_pred             e--eEeC-CCCCeEEcCCCCCCCC-----CcceEEEEECCEEEEEcccccccCC---------ceee-eeecceEEEEcC
Q 016877          310 V--YMLD-DEMKWKVLPSMPKPDS-----HIEFAWVLVNNSIVIVGGTTEKHPT---------TKKM-VLVGEIFQFNLN  371 (381)
Q Consensus       310 v--~~yd-~~~~W~~i~~~~~~~~-----~~~~~~~~~~~~l~v~GG~~~~~~~---------~~~~-~~~~~v~~yd~~  371 (381)
                      +  |+|| ++++|+.+++||.+|.     +.++++++++++|||+||.+.....         ...+ .....+++||++
T Consensus       219 ~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~  298 (346)
T TIGR03547       219 VKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD  298 (346)
T ss_pred             eEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec
Confidence            4  5555 6789999999987763     2344568899999999998632100         0000 012358999999


Q ss_pred             CCceEEeecC
Q 016877          372 TLVAVLNAML  381 (381)
Q Consensus       372 ~~~W~~i~~l  381 (381)
                      +++|+.++.|
T Consensus       299 ~~~W~~~~~l  308 (346)
T TIGR03547       299 NGKWSKVGKL  308 (346)
T ss_pred             CCcccccCCC
Confidence            9999988765

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PHA02790 Kelch-like protein; Provisional

Probab=100.00  E-value=4e-35  Score=282.96  Aligned_cols=189  Identities=19%  Similarity=0.305  Sum_probs=165.2

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      .+++||+.+++|..+++||.+|..++++.++++||++||.+..    +++++||+.+++|..+++||.+  |..+++++.
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~--r~~~~~~~~  361 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKP--RCNPAVASI  361 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCC--CcccEEEEE
Confidence            5677888889999999999999999999999999999997532    4699999999999999999984  778899999


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      +++||++||.++.     .+.+++|||++++|+.+++|+.+|..+++++++++||++||.        .       +.||
T Consensus       362 ~g~IYviGG~~~~-----~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~-------e~yd  421 (480)
T PHA02790        362 NNVIYVIGGHSET-----DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------A-------EFYC  421 (480)
T ss_pred             CCEEEEecCcCCC-----CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------e-------EEec
Confidence            9999999997542     367899999999999999999999999999999999999983        1       2356


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i  322 (381)
                      |.+++|+.+++||.+|..+++++++++||++||.+...                 ..+.+..|| ++++|+..
T Consensus       422 p~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~~~~~-----------------~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGFYRGS-----------------YIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             CCCCcEeEcCCCCCCccccEEEEECCEEEEECCcCCCc-----------------ccceEEEEECCCCeEEec
Confidence            88999999999999998889999999999999986331                 135688999 99999865

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=100.00  E-value=4.3e-34  Score=263.63  Aligned_cols=241  Identities=17%  Similarity=0.165  Sum_probs=182.6

Q ss_pred             CCCCceEEEECCEEEEEecCCCCC---------CcccceEEEe-CCC-CeEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877          111 PRLDGAAIQIKNLLYVFAGYGSID---------YVHSHVDIYN-FTD-NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG  179 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~~~~~---------~~~~~~~~yd-~~~-~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG  179 (381)
                      .++++.++++++.|||+||.+..+         ...+++++|+ +.. .+|..+++||.|  |..+++++++++||++||
T Consensus         3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~--r~~~~~~~~~~~lyviGG   80 (323)
T TIGR03548         3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE--AAYGASVSVENGIYYIGG   80 (323)
T ss_pred             ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc--ccceEEEEECCEEEEEcC
Confidence            456788899999999999986543         2345788886 332 379999999885  555667788999999999


Q ss_pred             CCCCCCCCCcceEEEEECCCCcE----EeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877          180 QYGPQCRGPTAHTFVLDTETKKW----QDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE  255 (381)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~~W----~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (381)
                      .++..   .++++++||+.+++|    +.+++||.+|..|++++++++|||+||.......       ..++.||+.+++
T Consensus        81 ~~~~~---~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~-------~~v~~yd~~~~~  150 (323)
T TIGR03548        81 SNSSE---RFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPS-------NKSYLFNLETQE  150 (323)
T ss_pred             CCCCC---CceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccC-------ceEEEEcCCCCC
Confidence            87643   378999999999988    7889999999999999999999999997543222       235566799999


Q ss_pred             eEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCC---CCCC
Q 016877          256 WRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP---KPDS  330 (381)
Q Consensus       256 W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~---~~~~  330 (381)
                      |+.++++|. .|..++++.++++||++||.+..                  ...++++|| .+++|+.+++++   .|+.
T Consensus       151 W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~------------------~~~~~~~yd~~~~~W~~~~~~~~~~~p~~  212 (323)
T TIGR03548       151 WFELPDFPGEPRVQPVCVKLQNELYVFGGGSNI------------------AYTDGYKYSPKKNQWQKVADPTTDSEPIS  212 (323)
T ss_pred             eeECCCCCCCCCCcceEEEECCEEEEEcCCCCc------------------cccceEEEecCCCeeEECCCCCCCCCcee
Confidence            999988874 67777888999999999998532                  134578999 899999998763   4444


Q ss_pred             CcceE-EEEECCEEEEEcccccccCC-------------------------ceeeeeecceEEEEcCCCceEEeecC
Q 016877          331 HIEFA-WVLVNNSIVIVGGTTEKHPT-------------------------TKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       331 ~~~~~-~~~~~~~l~v~GG~~~~~~~-------------------------~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      +++++ +++.+++||++||.+.....                         ...-.+.+++++||+++++|+.++.|
T Consensus       213 ~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~  289 (323)
T TIGR03548       213 LLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNS  289 (323)
T ss_pred             ccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccc
Confidence            33333 45557999999998742100                         00000235799999999999988753

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=100.00  E-value=9.6e-34  Score=266.05  Aligned_cols=259  Identities=18%  Similarity=0.243  Sum_probs=191.3

Q ss_pred             CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCC--CCeEecCCCCCCCCccceEEEEEeCCEEEEEc
Q 016877          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (381)
Q Consensus       101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~G  178 (381)
                      .++.+++||.||..+++++++++|||+||...     +.+++||+.  +++|..++++|.+ +|..++++..+++||++|
T Consensus        18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~-----~~~~~~d~~~~~~~W~~l~~~p~~-~r~~~~~v~~~~~IYV~G   91 (376)
T PRK14131         18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG-----TSWYKLDLNAPSKGWTKIAAFPGG-PREQAVAAFIDGKLYVFG   91 (376)
T ss_pred             ecccCCCCCcCccCCeEEEECCEEEEEeCCCC-----CeEEEEECCCCCCCeEECCcCCCC-CcccceEEEECCEEEEEc
Confidence            56788999999998899999999999999742     348899987  4789999998753 478888999999999999


Q ss_pred             CCCCCC---CCCCcceEEEEECCCCcEEeCCC-CCCCCcccEEEE-ECCEEEEEccCCCCCC------------------
Q 016877          179 GQYGPQ---CRGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQL-WRGRLHVMGGSGENRY------------------  235 (381)
Q Consensus       179 G~~~~~---~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~lyv~GG~~~~~~------------------  235 (381)
                      |.....   ....++++++||+.+++|+.+++ +|.++..|++++ .+++||++||.....+                  
T Consensus        92 G~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~  171 (376)
T PRK14131         92 GIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKD  171 (376)
T ss_pred             CCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhh
Confidence            986411   11236899999999999999985 467777788776 8999999999753210                  


Q ss_pred             -------CCCcc--ceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCcee
Q 016877          236 -------TPEVD--HWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV  305 (381)
Q Consensus       236 -------~~~~~--~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~  305 (381)
                             .....  .+...++.||+.+++|+.++++|. .+.+++++.++++||++||......                
T Consensus       172 ~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~----------------  235 (376)
T PRK14131        172 KINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGL----------------  235 (376)
T ss_pred             hhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCc----------------
Confidence                   00000  123457788899999999998886 6767788889999999999743210                


Q ss_pred             ecCcee--EeC-CCCCeEEcCCCCCCCCC------cceEEEEECCEEEEEcccccccCC---------ceeee-eecceE
Q 016877          306 VYDDVY--MLD-DEMKWKVLPSMPKPDSH------IEFAWVLVNNSIVIVGGTTEKHPT---------TKKMV-LVGEIF  366 (381)
Q Consensus       306 ~~~~v~--~yd-~~~~W~~i~~~~~~~~~------~~~~~~~~~~~l~v~GG~~~~~~~---------~~~~~-~~~~v~  366 (381)
                      ...++|  +|| ++++|+.+++||.+|..      .++.+++.+++|||+||.+.....         ...+. ....++
T Consensus       236 ~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e  315 (376)
T PRK14131        236 RTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDE  315 (376)
T ss_pred             CChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehh
Confidence            123344  556 78999999999877632      223357899999999998642210         00000 012478


Q ss_pred             EEEcCCCceEEeecC
Q 016877          367 QFNLNTLVAVLNAML  381 (381)
Q Consensus       367 ~yd~~~~~W~~i~~l  381 (381)
                      +||+++++|+.++.|
T Consensus       316 ~yd~~~~~W~~~~~l  330 (376)
T PRK14131        316 IYALVNGKWQKVGEL  330 (376)
T ss_pred             eEEecCCcccccCcC
Confidence            999999999988764

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=236.04  Aligned_cols=258  Identities=19%  Similarity=0.306  Sum_probs=202.8

Q ss_pred             CeEEccCCCCCCCCceEEEECCEEEEEecCCCCC-----CcccceEEEeCCCCeEecCCCC--------C---CCCccce
Q 016877          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDM--------P---REMAHSH  164 (381)
Q Consensus       101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~--------~---~~~~r~~  164 (381)
                      +|+.--+--..|-.|+++.++.+||-|||+-...     .. -++.++|..+-+|+++++-        +   .|..|++
T Consensus         3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~p-iDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYG   81 (392)
T KOG4693|consen    3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDP-IDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYG   81 (392)
T ss_pred             eEEEEecCCcccccceeeeecceEEecCCcccccccccCCc-ceeEEeeccceeEEecCcccccccccCCCCccchhhcC
Confidence            4654433345678999999999999999974322     22 2599999999999998761        1   2556999


Q ss_pred             EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH  241 (381)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  241 (381)
                      |+++.+++++|+.||......  ..|.++.|||++++|.+..   -+|.+|.+|++++.++.+|||||+..     ..++
T Consensus        82 HtvV~y~d~~yvWGGRND~eg--aCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~-----~a~~  154 (392)
T KOG4693|consen   82 HTVVEYQDKAYVWGGRNDDEG--ACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE-----DAQR  154 (392)
T ss_pred             ceEEEEcceEEEEcCccCccc--ccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH-----HHHh
Confidence            999999999999999876543  3789999999999998875   58999999999999999999999865     3556


Q ss_pred             eEeeeecCCccCCceEEec---CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCC
Q 016877          242 WSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEM  317 (381)
Q Consensus       242 ~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~  317 (381)
                      |+.++..+|..+.+|+.+-   ..|+-|-.|++.++++.+|||||.....+.        .....+.++++|..+| .+.
T Consensus       155 FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gp--------fHs~~e~Yc~~i~~ld~~T~  226 (392)
T KOG4693|consen  155 FSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGP--------FHSIHEQYCDTIMALDLATG  226 (392)
T ss_pred             hhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCC--------ccchhhhhcceeEEEecccc
Confidence            6666666678999999873   346777778999999999999998765431        1234556888899999 999


Q ss_pred             CeEEcCCCC-CCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEee
Q 016877          318 KWKVLPSMP-KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA  379 (381)
Q Consensus       318 ~W~~i~~~~-~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  379 (381)
                      .|...++.+ .|-.+..+++.++|++||+|||+++.-+.     -++|+|+|||.+..|..|.
T Consensus       227 aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~-----HfndLy~FdP~t~~W~~I~  284 (392)
T KOG4693|consen  227 AWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNV-----HFNDLYCFDPKTSMWSVIS  284 (392)
T ss_pred             ccccCCCCCcCCCcccccceEEEcceEEEecccchhhhh-----hhcceeecccccchheeee
Confidence            999886532 22334456789999999999999865431     2679999999999999886

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.96  E-value=7.3e-28  Score=231.32  Aligned_cols=249  Identities=21%  Similarity=0.293  Sum_probs=197.3

Q ss_pred             HHHHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCC
Q 016877           22 IFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK  101 (381)
Q Consensus        22 ~~~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (381)
                      .+++.|+++++++.+|+|||......+..                                       ..++.+|..+..
T Consensus        59 ~~R~~hs~~~~~~~~~vfGG~~~~~~~~~---------------------------------------~dl~~~d~~~~~   99 (482)
T KOG0379|consen   59 IPRAGHSAVLIGNKLYVFGGYGSGDRLTD---------------------------------------LDLYVLDLESQL   99 (482)
T ss_pred             chhhccceeEECCEEEEECCCCCCCcccc---------------------------------------ceeEEeecCCcc
Confidence            45679999999999999999555443211                                       046667777778


Q ss_pred             eEEcc---CCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CCccceEEEEEeCCEEEEE
Q 016877          102 WEKMK---AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVTDGRYIYVV  177 (381)
Q Consensus       102 W~~l~---~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~~~~~~~~iyv~  177 (381)
                      |....   ..|.+|.+|.++.++++||+|||.+......++++.||+.+++|..+..... |.+|..|+++++++++|||
T Consensus       100 w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vf  179 (482)
T KOG0379|consen  100 WTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVF  179 (482)
T ss_pred             cccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEE
Confidence            87654   3778999999999999999999998644456889999999999999876655 6679999999999999999


Q ss_pred             cCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCC-CCCCCCCccceEeeeecCCccC
Q 016877          178 TGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHWSLAVKDGKPLE  253 (381)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~~~~~~~~~~~~  253 (381)
                      ||.+....  .++++|.||+++.+|.++.   +.|.||++|++++++++++++||.+ +..+..       +++.+|..+
T Consensus       180 GG~~~~~~--~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~-------D~~~ldl~~  250 (482)
T KOG0379|consen  180 GGIGGTGD--SLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLN-------DVHILDLST  250 (482)
T ss_pred             CCccCccc--ceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceec-------ceEeeeccc
Confidence            99887653  4899999999999999986   6788999999999999999999987 433343       334445778


Q ss_pred             CceEEec---CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCC----
Q 016877          254 KEWRTEI---PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSM----  325 (381)
Q Consensus       254 ~~W~~~~---~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~----  325 (381)
                      .+|..+.   ..|.+|..|+.+..+.+++++||.....               .....++|.|| ++..|+.+...    
T Consensus       251 ~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~---------------~~~l~~~~~l~~~~~~w~~~~~~~~~~  315 (482)
T KOG0379|consen  251 WEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPK---------------QEPLGDLYGLDLETLVWSKVESVGVVR  315 (482)
T ss_pred             ceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccc---------------cccccccccccccccceeeeecccccc
Confidence            9999664   3578888889999999999999986430               01366799999 89999988654    


Q ss_pred             CCCCCCcc
Q 016877          326 PKPDSHIE  333 (381)
Q Consensus       326 ~~~~~~~~  333 (381)
                      |.++..+.
T Consensus       316 ~~~~~~~~  323 (482)
T KOG0379|consen  316 PSPRLGHA  323 (482)
T ss_pred             cccccccc
Confidence            34444433

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.96  E-value=3.8e-28  Score=214.59  Aligned_cols=261  Identities=19%  Similarity=0.293  Sum_probs=196.0

Q ss_pred             cCCCCCCCCceEEEE--CCEEEEEecC--CCCC-CcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC-CEEEEEcC
Q 016877          106 KAAPVPRLDGAAIQI--KNLLYVFAGY--GSID-YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RYIYVVTG  179 (381)
Q Consensus       106 ~~~p~~r~~~~~~~~--~~~iyv~GG~--~~~~-~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG  179 (381)
                      .+.|.||.+++++..  .+.|++|||.  +++. .+.++++.||.++++|+.+.+...|.+|+.|.++++. +.+|+|||
T Consensus        61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG  140 (521)
T KOG1230|consen   61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG  140 (521)
T ss_pred             CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence            357899999988765  3489999995  4433 3568999999999999998766555578888887765 89999999


Q ss_pred             CCCC-C--CCCCcceEEEEECCCCcEEeCC--CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCC
Q 016877          180 QYGP-Q--CRGPTAHTFVLDTETKKWQDLP--PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (381)
Q Consensus       180 ~~~~-~--~~~~~~~~~~yd~~~~~W~~~~--~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  254 (381)
                      .... .  .+--.+++|.||..+++|+++.  .-|.||++|-+++..++|++|||+.+.   +....|-.+++.||..+-
T Consensus       141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~---nr~y~YyNDvy~FdLdty  217 (521)
T KOG1230|consen  141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDS---NRDYIYYNDVYAFDLDTY  217 (521)
T ss_pred             ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecC---CCceEEeeeeEEEeccce
Confidence            7432 1  1122689999999999999986  578999999999999999999998763   334456667788888899


Q ss_pred             ceEEecC---CCCCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CC-----CCeEEcCC
Q 016877          255 EWRTEIP---IPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE-----MKWKVLPS  324 (381)
Q Consensus       255 ~W~~~~~---~p~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~-----~~W~~i~~  324 (381)
                      +|+.+.|   -|.+|+++.+.+. ++.|||+|||+.....+        ........+|++.++ +.     -.|+.+.+
T Consensus       218 kW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK--------~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp  289 (521)
T KOG1230|consen  218 KWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKK--------DVDKGTRHSDMFLLKPEDGREDKWVWTKVKP  289 (521)
T ss_pred             eeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhh--------hhhcCceeeeeeeecCCcCCCcceeEeeccC
Confidence            9999744   3666666666666 99999999998653211        111223567889887 43     46777765


Q ss_pred             ---CCCCCCCcceEEEEECCEEEEEccccccc--CCceeeeeecceEEEEcCCCceEEe
Q 016877          325 ---MPKPDSHIEFAWVLVNNSIVIVGGTTEKH--PTTKKMVLVGEIFQFNLNTLVAVLN  378 (381)
Q Consensus       325 ---~~~~~~~~~~~~~~~~~~l~v~GG~~~~~--~~~~~~~~~~~v~~yd~~~~~W~~i  378 (381)
                         -|.||..++++ +..+++-|.|||..+..  ...-.+.++||++.||+..++|...
T Consensus       290 ~g~kPspRsgfsv~-va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  290 SGVKPSPRSGFSVA-VAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             CCCCCCCCCceeEE-EecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence               37788776653 56677999999987522  2223356899999999999999754

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=99.96  E-value=3.8e-27  Score=226.42  Aligned_cols=243  Identities=26%  Similarity=0.434  Sum_probs=196.4

Q ss_pred             CCCCCCCCceEEEECCEEEEEecCCCCCCccc-ceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877          107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHS-HVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQ  184 (381)
Q Consensus       107 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~  184 (381)
                      ..|.+|..|+++.+++++|||||........+ +++++|..+..|.....- ..|.+|..|+++.++++||+|||.+...
T Consensus        56 ~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~  135 (482)
T KOG0379|consen   56 VGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKY  135 (482)
T ss_pred             CCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCC
Confidence            47889999999999999999999876554333 699999999999986432 3345799999999999999999988632


Q ss_pred             CCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEe--
Q 016877          185 CRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE--  259 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~--  259 (381)
                        ..+++++.||+.|++|+.+.   ..|.+|.+|+++++++++|||||.....-      +..+++.||..+.+|.++  
T Consensus       136 --~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~------~~ndl~i~d~~~~~W~~~~~  207 (482)
T KOG0379|consen  136 --RNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGD------SLNDLHIYDLETSTWSELDT  207 (482)
T ss_pred             --CChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCccc------ceeeeeeeccccccceeccc
Confidence              23899999999999999886   46899999999999999999999875431      344556667889999986  


Q ss_pred             -cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCC---CCCCCCCcce
Q 016877          260 -IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPS---MPKPDSHIEF  334 (381)
Q Consensus       260 -~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~---~~~~~~~~~~  334 (381)
                       .+.|.+|.+|+++..++++++|||....                ..+++|+|.+| .+..|..+.+   +|.+|..  +
T Consensus       208 ~g~~P~pR~gH~~~~~~~~~~v~gG~~~~----------------~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~--h  269 (482)
T KOG0379|consen  208 QGEAPSPRYGHAMVVVGNKLLVFGGGDDG----------------DVYLNDVHILDLSTWEWKLLPTGGDLPSPRSG--H  269 (482)
T ss_pred             CCCCCCCCCCceEEEECCeEEEEeccccC----------------CceecceEeeecccceeeeccccCCCCCCcce--e
Confidence             3457788888999999999999998722                22689999999 8899997653   5666665  5


Q ss_pred             EEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877          335 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       335 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      +++..+.+++++||......     ..+.++|.||.+++.|..+..
T Consensus       270 ~~~~~~~~~~l~gG~~~~~~-----~~l~~~~~l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  270 SLTVSGDHLLLFGGGTDPKQ-----EPLGDLYGLDLETLVWSKVES  310 (482)
T ss_pred             eeEEECCEEEEEcCCccccc-----ccccccccccccccceeeeec
Confidence            56799999999999876410     035789999999999998764

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.4e-26  Score=209.56  Aligned_cols=293  Identities=15%  Similarity=0.209  Sum_probs=214.0

Q ss_pred             CCCCCCceeEEeee---cccccccccCcceEeecCCCCCeEEc---cCCCCCCCCceEEEECCEEEEEecCCCCCCcccc
Q 016877           66 NGPQKGENIGVKTK---KDVVPKRILPATFQDLPAPELKWEKM---KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH  139 (381)
Q Consensus        66 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~W~~l---~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  139 (381)
                      +.||++|....+-.   ++..+...+-+.+..||..+++|..-   .+.|.+...|+.+-.+.+||+|||+..-+.+.++
T Consensus        30 PrpRHGHRAVaikELiviFGGGNEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNd  109 (830)
T KOG4152|consen   30 PRPRHGHRAVAIKELIVIFGGGNEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSND  109 (830)
T ss_pred             CCccccchheeeeeeEEEecCCcccchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccch
Confidence            66788777665544   34444456667899999999999653   4688888888888889999999999988888887


Q ss_pred             eEEEeCCCCeEecCCCC-----CCCCccceEEEEEeCCEEEEEcCCCCCCCC------CCcceEEEEECCCC----cEEe
Q 016877          140 VDIYNFTDNTWGGRFDM-----PREMAHSHLGMVTDGRYIYVVTGQYGPQCR------GPTAHTFVLDTETK----KWQD  204 (381)
Q Consensus       140 ~~~yd~~~~~W~~~~~~-----~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~------~~~~~~~~yd~~~~----~W~~  204 (381)
                      ++.+-...-.|+++.+-     +.|.+|-+|+..+++++-|+|||...+...      .+++|+|..++.-.    .|..
T Consensus       110 LYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~i  189 (830)
T KOG4152|consen  110 LYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDI  189 (830)
T ss_pred             HHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEec
Confidence            76655555567776432     224569999999999999999997543221      34889998887743    3876


Q ss_pred             C---CCCCCCCcccEEEEE------CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEe-----cCCCCCCccee
Q 016877          205 L---PPLPVPRYAPATQLW------RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE-----IPIPRGGPHRA  270 (381)
Q Consensus       205 ~---~~~p~~r~~~~~~~~------~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~-----~~~p~~~~~~~  270 (381)
                      .   ..+|.+|-.|+++++      ..++||+||.++-+   ..+.|.++     .++..|.+.     +||||+.  |+
T Consensus       190 p~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~R---LgDLW~Ld-----l~Tl~W~kp~~~G~~PlPRSL--Hs  259 (830)
T KOG4152|consen  190 PITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGCR---LGDLWTLD-----LDTLTWNKPSLSGVAPLPRSL--HS  259 (830)
T ss_pred             ccccCCCCCCcccceeEEEEeccCCcceEEEEccccccc---ccceeEEe-----cceeecccccccCCCCCCccc--cc
Confidence            5   368999999999987      34799999998743   34567663     778899874     5667665  48


Q ss_pred             EEEeCCEEEEEccCCCCCCCCCCCCccccccCce-eecCceeEeC-CCCCeEEcC-----CCCCCCCCcceEEEEECCEE
Q 016877          271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNE-VVYDDVYMLD-DEMKWKVLP-----SMPKPDSHIEFAWVLVNNSI  343 (381)
Q Consensus       271 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~yd-~~~~W~~i~-----~~~~~~~~~~~~~~~~~~~l  343 (381)
                      +..+++++|||||.-..-..+-    ....+..+ ...+.+-++| +++.|+.+-     .-..||.+++|+++.++.+|
T Consensus       260 a~~IGnKMyvfGGWVPl~~~~~----~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRl  335 (830)
T KOG4152|consen  260 ATTIGNKMYVFGGWVPLVMDDV----KVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRL  335 (830)
T ss_pred             ceeecceeEEecceeeeecccc----ccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEE
Confidence            9999999999999743221110    00011111 1233455566 899998763     11356778888999999999


Q ss_pred             EEEcccccccCCceeeeeecceEEEEcCC
Q 016877          344 VIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       344 ~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                      |+..|+++.......++.+.|+|-+|.++
T Consensus       336 YiWSGRDGYrKAwnnQVCCkDlWyLdTek  364 (830)
T KOG4152|consen  336 YIWSGRDGYRKAWNNQVCCKDLWYLDTEK  364 (830)
T ss_pred             EEEeccchhhHhhccccchhhhhhhcccC
Confidence            99999998877777788899999999765

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=99.95  E-value=2.1e-26  Score=203.63  Aligned_cols=254  Identities=20%  Similarity=0.276  Sum_probs=188.0

Q ss_pred             eeecCCCCCCCceeE---------Eeee-cccccccccCcceEeecCCCCCeEEcc--CCCCCCCCceEEEEC-CEEEEE
Q 016877           61 IILPNNGPQKGENIG---------VKTK-KDVVPKRILPATFQDLPAPELKWEKMK--AAPVPRLDGAAIQIK-NLLYVF  127 (381)
Q Consensus        61 ~~~p~~~~~~~~~~~---------~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~--~~p~~r~~~~~~~~~-~~iyv~  127 (381)
                      ..+|+++||....+.         .+++ .+......+-+.++.||...++|+++.  +.|.||+.|+++++. +.+|+|
T Consensus        59 ~~~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~f  138 (521)
T KOG1230|consen   59 TSVPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLF  138 (521)
T ss_pred             ccCCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEe
Confidence            455667778765544         4455 455445566678999999999999874  478999999998885 899999


Q ss_pred             ecCC-CCC----CcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCC-CCCCCcceEEEEECCCCc
Q 016877          128 AGYG-SID----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGP-QCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       128 GG~~-~~~----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~~~yd~~~~~  201 (381)
                      ||.- ..+    ...+++|.||+.+++|+++..-..|.+|.+|.+++..++|+||||+... ....+.|++|+||+++-+
T Consensus       139 GGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtyk  218 (521)
T KOG1230|consen  139 GGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYK  218 (521)
T ss_pred             ccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEecccee
Confidence            9962 111    2347899999999999999877778889999999999999999998554 333568999999999999


Q ss_pred             EEeCCC---CCCCCcccEEEEE-CCEEEEEccCCCCC-------CCCCccceEeeeecCCccCCceEEecC---CCCCCc
Q 016877          202 WQDLPP---LPVPRYAPATQLW-RGRLHVMGGSGENR-------YTPEVDHWSLAVKDGKPLEKEWRTEIP---IPRGGP  267 (381)
Q Consensus       202 W~~~~~---~p~~r~~~~~~~~-~~~lyv~GG~~~~~-------~~~~~~~~~~~~~~~~~~~~~W~~~~~---~p~~~~  267 (381)
                      |+++.+   -|.||++|++.+. ++.|||.||++...       -....+.|.+.....+...-+|+.+.|   -|.+|.
T Consensus       219 W~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRs  298 (521)
T KOG1230|consen  219 WSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRS  298 (521)
T ss_pred             eeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCC
Confidence            999975   4789999999998 99999999986422       122345666543322222356787754   256666


Q ss_pred             ceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877          268 HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (381)
Q Consensus       268 ~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i  322 (381)
                      +.++++. +++-|.|||...-..        ....-...+.||+|.|| +.++|...
T Consensus       299 gfsv~va~n~kal~FGGV~D~ee--------eeEsl~g~F~NDLy~fdlt~nrW~~~  347 (521)
T KOG1230|consen  299 GFSVAVAKNHKALFFGGVCDLEE--------EEESLSGEFFNDLYFFDLTRNRWSEG  347 (521)
T ss_pred             ceeEEEecCCceEEecceecccc--------cchhhhhhhhhhhhheecccchhhHh
Confidence            6677765 669999999865211        00112334789999999 89999654

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=2e-25  Score=202.09  Aligned_cols=274  Identities=17%  Similarity=0.235  Sum_probs=200.7

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecC-----CCCCCCceeEEeee-ccccccc----ccCcceEee
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPN-----NGPQKGENIGVKTK-KDVVPKR----ILPATFQDL   95 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~-----~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~   95 (381)
                      -|-++++...|.+|||.|- ++..+++.||-.+++.-+|.     +.+-.+||+.+.+. ++..++.    .+++.++.+
T Consensus        35 GHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYEL  113 (830)
T KOG4152|consen   35 GHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYEL  113 (830)
T ss_pred             cchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHh
Confidence            3888999999999999542 36789999999999944444     33334788876666 6666653    456667777


Q ss_pred             cCCCCCeEEccC-------CCCCCCCceEEEECCEEEEEecCCCC--------CCcccceEEEeCCCC----eEecCCC-
Q 016877           96 PAPELKWEKMKA-------APVPRLDGAAIQIKNLLYVFAGYGSI--------DYVHSHVDIYNFTDN----TWGGRFD-  155 (381)
Q Consensus        96 ~~~~~~W~~l~~-------~p~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~~yd~~~~----~W~~~~~-  155 (381)
                      ....-.|+++.+       +|.||.+|+..+.+++.|+|||..++        ..+++|++++++.-.    .|...-. 
T Consensus       114 QasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~  193 (830)
T KOG4152|consen  114 QASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITY  193 (830)
T ss_pred             hhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEeccccc
Confidence            666678888743       67999999999999999999997431        246789999998854    3887422 


Q ss_pred             CCCCCccceEEEEEe------CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEECCEEEE
Q 016877          156 MPREMAHSHLGMVTD------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLWRGRLHV  226 (381)
Q Consensus       156 ~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~lyv  226 (381)
                      -+.|.+|..|+++.+      ..++||+||..+-    .+.|+|.+|++|.+|.+..   -.|.||..|++..+++|+||
T Consensus       194 Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~----RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyv  269 (830)
T KOG4152|consen  194 GVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC----RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYV  269 (830)
T ss_pred             CCCCCCcccceeEEEEeccCCcceEEEEcccccc----cccceeEEecceeecccccccCCCCCCcccccceeecceeEE
Confidence            123445788888877      3479999999884    4799999999999999875   46788999999999999999


Q ss_pred             EccCCC-----CCCCCCccceEe--eeecCCccCCceEEe-------cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCC
Q 016877          227 MGGSGE-----NRYTPEVDHWSL--AVKDGKPLEKEWRTE-------IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP  292 (381)
Q Consensus       227 ~GG~~~-----~~~~~~~~~~~~--~~~~~~~~~~~W~~~-------~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~  292 (381)
                      |||+--     .........|..  .+.+++..++.|+.+       ...||+|.+|.++.++.+||+..|.++..    
T Consensus       270 fGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDGYr----  345 (830)
T KOG4152|consen  270 FGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDGYR----  345 (830)
T ss_pred             ecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEeccEEEEEeccchhh----
Confidence            999732     111222223321  233445668999875       23799999999999999999999987541    


Q ss_pred             CCCccccccCceeecCceeEeC
Q 016877          293 GSPIFKCSRRNEVVYDDVYMLD  314 (381)
Q Consensus       293 ~~~~~~~~~~~~~~~~~v~~yd  314 (381)
                           +.++. +..+.|+|.+|
T Consensus       346 -----KAwnn-QVCCkDlWyLd  361 (830)
T KOG4152|consen  346 -----KAWNN-QVCCKDLWYLD  361 (830)
T ss_pred             -----Hhhcc-ccchhhhhhhc
Confidence                 22333 33466677775

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.84  E-value=2.5e-19  Score=157.02  Aligned_cols=252  Identities=22%  Similarity=0.311  Sum_probs=183.8

Q ss_pred             EccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCC--CeEecCCCCCCCCccceEEEEEeCCEEEEEcCCC
Q 016877          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (381)
Q Consensus       104 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  181 (381)
                      .+|++|.+-...+.+.+++.+||-=|..+.     +.+..|++.  ..|++++..|.+ +|.....++.+++||+|||..
T Consensus        29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G~-----afy~ldL~~~~k~W~~~a~FpG~-~rnqa~~a~~~~kLyvFgG~G  102 (381)
T COG3055          29 QLPDLPVGFKNGAGALIGDTVYVGLGSAGT-----AFYVLDLKKPGKGWTKIADFPGG-ARNQAVAAVIGGKLYVFGGYG  102 (381)
T ss_pred             cCCCCCccccccccceecceEEEEeccCCc-----cceehhhhcCCCCceEcccCCCc-ccccchheeeCCeEEEeeccc
Confidence            468899998888888899999997775432     355666664  579999999986 588889999999999999975


Q ss_pred             CCCC--CCCcceEEEEECCCCcEEeCCC-CCCCCcccEEEEECC-EEEEEccCCCCC-----------------------
Q 016877          182 GPQC--RGPTAHTFVLDTETKKWQDLPP-LPVPRYAPATQLWRG-RLHVMGGSGENR-----------------------  234 (381)
Q Consensus       182 ~~~~--~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~-~lyv~GG~~~~~-----------------------  234 (381)
                      ....  ....+++|+|||.+++|+++.. .|....+++.+.+++ +||++||.+...                       
T Consensus       103 k~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~  182 (381)
T COG3055         103 KSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIA  182 (381)
T ss_pred             cCCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHH
Confidence            4332  3448999999999999999974 567788888888888 999999986421                       


Q ss_pred             ----CCCCccceEeeeecCCccCCceEEecCCCC-CCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 016877          235 ----YTPEVDHWSLAVKDGKPLEKEWRTEIPIPR-GGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (381)
Q Consensus       235 ----~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~-~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (381)
                          ..+....|.-++..|+|++++|+.+...|- .+++++++.-++++.++.|+-...           .+     +.+
T Consensus       183 ~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpG-----------LR-----t~~  246 (381)
T COG3055         183 HYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPG-----------LR-----TAE  246 (381)
T ss_pred             HHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCC-----------cc-----ccc
Confidence                122344567778899999999999875553 333445556678899999985432           11     223


Q ss_pred             eeEeC---CCCCeEEcCCCCCCCCC-----cceEEEEECCEEEEEcccccc-------------cC-CceeeeeecceEE
Q 016877          310 VYMLD---DEMKWKVLPSMPKPDSH-----IEFAWVLVNNSIVIVGGTTEK-------------HP-TTKKMVLVGEIFQ  367 (381)
Q Consensus       310 v~~yd---~~~~W~~i~~~~~~~~~-----~~~~~~~~~~~l~v~GG~~~~-------------~~-~~~~~~~~~~v~~  367 (381)
                      ++.++   ...+|..++.+|.+...     +++-.-..++.++|.||.+-.             |+ ..+  .+.++||+
T Consensus       247 ~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K--~w~~~Vy~  324 (381)
T COG3055         247 VKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSK--SWNSEVYI  324 (381)
T ss_pred             eeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhh--hhhceEEE
Confidence            44444   56799999888765532     222234567999999996521             11 112  26778999


Q ss_pred             EEcCCCceEEeecC
Q 016877          368 FNLNTLVAVLNAML  381 (381)
Q Consensus       368 yd~~~~~W~~i~~l  381 (381)
                      +|  ++.|+.+++|
T Consensus       325 ~d--~g~Wk~~GeL  336 (381)
T COG3055         325 FD--NGSWKIVGEL  336 (381)
T ss_pred             Ec--CCceeeeccc
Confidence            98  8999999876

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.84  E-value=6.5e-19  Score=154.40  Aligned_cols=262  Identities=19%  Similarity=0.245  Sum_probs=176.2

Q ss_pred             cCCCCCeEEccCCC-CCCCCceEEEECCEEEEEecCCCC----CCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           96 PAPELKWEKMKAAP-VPRLDGAAIQIKNLLYVFAGYGSI----DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        96 ~~~~~~W~~l~~~p-~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      +-....|++++..| .+|.+..++.++++||||||....    .+..+++++||+.+|+|+++.... |+....++++.+
T Consensus        66 ~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~s-P~gl~G~~~~~~  144 (381)
T COG3055          66 KKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRS-PTGLVGASTFSL  144 (381)
T ss_pred             hcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccc-ccccccceeEec
Confidence            34556999999988 678888899999999999997532    346689999999999999997654 223556667777


Q ss_pred             CC-EEEEEcCCCCCC-------------------------------CCCCcceEEEEECCCCcEEeCCCCC-CCCcccEE
Q 016877          171 GR-YIYVVTGQYGPQ-------------------------------CRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPAT  217 (381)
Q Consensus       171 ~~-~iyv~GG~~~~~-------------------------------~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~  217 (381)
                      ++ +||++||.....                               .......+..|||.+++|+.+...| .++++++.
T Consensus       145 ~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~  224 (381)
T COG3055         145 NGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAV  224 (381)
T ss_pred             CCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcce
Confidence            66 999999974110                               0123567889999999999999777 57787676


Q ss_pred             EEECCEEEEEccCCCCC-CCCCccceEeeeecCCccCCceEEecCCCCCCc-------ceeEEEeCCEEEEEccCCCCCC
Q 016877          218 QLWRGRLHVMGGSGENR-YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP-------HRACVVVDDRLLVIGGQEGDFM  289 (381)
Q Consensus       218 ~~~~~~lyv~GG~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-------~~~~~~~~~~l~v~GG~~~~~~  289 (381)
                      +.-++++.++-|.-... ..+.+....+     .....+|..++.+|..-.       ++-.-..++.+.+.||......
T Consensus       225 ~~~~n~~~lInGEiKpGLRt~~~k~~~~-----~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga  299 (381)
T COG3055         225 VIKGNKLTLINGEIKPGLRTAEVKQADF-----GGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGA  299 (381)
T ss_pred             eecCCeEEEEcceecCCccccceeEEEe-----ccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhH
Confidence            66788888887753221 2223333332     345679999866543221       1122245788999998654321


Q ss_pred             CCCCCCccccc--cCceeecCceeEeCCCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEE
Q 016877          290 AKPGSPIFKCS--RRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQ  367 (381)
Q Consensus       290 ~~~~~~~~~~~--~~~~~~~~~v~~yd~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~  367 (381)
                      .+..-......  .-.....++||.+| .+.|+.+..||.++.+ + ..+..+++||++||.+..+.      ...+++.
T Consensus       300 ~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d-~g~Wk~~GeLp~~l~Y-G-~s~~~nn~vl~IGGE~~~Gk------a~~~v~~  370 (381)
T COG3055         300 LKAYKNGKFYAHEGLSKSWNSEVYIFD-NGSWKIVGELPQGLAY-G-VSLSYNNKVLLIGGETSGGK------ATTRVYS  370 (381)
T ss_pred             HHHHHhcccccccchhhhhhceEEEEc-CCceeeecccCCCccc-e-EEEecCCcEEEEccccCCCe------eeeeEEE
Confidence            11000000000  01223567899995 9999999999997765 3 35888999999999987664      3344555


Q ss_pred             EEcCC
Q 016877          368 FNLNT  372 (381)
Q Consensus       368 yd~~~  372 (381)
                      +-.+.
T Consensus       371 l~~~g  375 (381)
T COG3055         371 LSWDG  375 (381)
T ss_pred             EEEcC
Confidence            44433

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.40  E-value=1.3e-13  Score=125.81  Aligned_cols=258  Identities=14%  Similarity=0.172  Sum_probs=166.2

Q ss_pred             CCeEEccC----------CCCCCCCceEEEECC--EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC-CCCccceEE
Q 016877          100 LKWEKMKA----------APVPRLDGAAIQIKN--LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLG  166 (381)
Q Consensus       100 ~~W~~l~~----------~p~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~  166 (381)
                      .+|.++++          -|..|.+|.++...+  -||+.||+++.+.+ .+.|+|+...+.|..+.--. .|-.|..|.
T Consensus       239 ~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l-~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHR  317 (723)
T KOG2437|consen  239 PRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQDL-ADFWAYSVKENQWTCINRDTEGPGARSCHR  317 (723)
T ss_pred             ccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccchhH-HHHHhhcCCcceeEEeecCCCCCcchhhhh
Confidence            47887753          367799999988765  89999999988875 67999999999999875432 344788888


Q ss_pred             EEEeCC--EEEEEcCCCCCCC---CCCcceEEEEECCCCcEEeCC------CCCCCCcccEEEEECCE--EEEEccCCCC
Q 016877          167 MVTDGR--YIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLP------PLPVPRYAPATQLWRGR--LHVMGGSGEN  233 (381)
Q Consensus       167 ~~~~~~--~iyv~GG~~~~~~---~~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--lyv~GG~~~~  233 (381)
                      ++..-.  ++|+.|-+-+.+.   ....+++|+||..++.|..+.      .-|...+.|.+++.+++  |||+||+.-+
T Consensus       318 MVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~  397 (723)
T KOG2437|consen  318 MVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILT  397 (723)
T ss_pred             hhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeecc
Confidence            888655  9999997754322   223689999999999999885      24667889999999888  9999998643


Q ss_pred             CCCCCccceEeeeecCCccCCceEEecCC----------CCCCccee--EEEeCCEEEEEccCCCCCCCCCCCCcccccc
Q 016877          234 RYTPEVDHWSLAVKDGKPLEKEWRTEIPI----------PRGGPHRA--CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSR  301 (381)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~W~~~~~~----------p~~~~~~~--~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~  301 (381)
                      .   ...+|. -+|.|+.....|.....-          -..|.++.  .+.-+..+|++||......            
T Consensus       398 ~---~e~~f~-GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~E------------  461 (723)
T KOG2437|consen  398 C---NEPQFS-GLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTE------------  461 (723)
T ss_pred             C---CCcccc-ceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceE------------
Confidence            2   223332 356667888888764221          11232332  3445778999999865432            


Q ss_pred             CceeecCceeEeC-CCCCeEEc-------CCC-CCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877          302 RNEVVYDDVYMLD-DEMKWKVL-------PSM-PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       302 ~~~~~~~~v~~yd-~~~~W~~i-------~~~-~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                           .+-.+.|+ ....=..+       ..+ |.+.....+.+-.-.+.|.+.-|...... .+.+...++.|+|+..+
T Consensus       462 -----l~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qRs~~dp~~~~i~~~~G~~~~~~-~~e~~~rns~wi~~i~~  535 (723)
T KOG2437|consen  462 -----LNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQRATIDPELNEIHVLSGLSKDKE-KREENVRNSFWIYDIVR  535 (723)
T ss_pred             -----EeehhcceeccccchhhhccCcCccccCCCcchhhhcccCCCCcchhhhcccchhcc-CccccccCcEEEEEecc
Confidence                 22233343 11110011       011 11110000111222467777777654321 11122567899999999


Q ss_pred             CceEEeec
Q 016877          373 LVAVLNAM  380 (381)
Q Consensus       373 ~~W~~i~~  380 (381)
                      +.|.+|.+
T Consensus       536 ~~w~cI~~  543 (723)
T KOG2437|consen  536 NSWSCIYK  543 (723)
T ss_pred             cchhhHhh
Confidence            99988754

>PF13964 Kelch_6: Kelch motif

Probab=99.35  E-value=2.6e-12  Score=83.59  Aligned_cols=49  Identities=31%  Similarity=0.562  Sum_probs=45.1

Q ss_pred             CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCC
Q 016877          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE  159 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~  159 (381)
                      ||.+|++++++++|||+||........+++++||+++++|+.+++||.|
T Consensus         1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen    1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCC
Confidence            6999999999999999999987566678899999999999999999985

>PF13964 Kelch_6: Kelch motif

Probab=99.34  E-value=3e-12  Score=83.32  Aligned_cols=49  Identities=33%  Similarity=0.526  Sum_probs=44.5

Q ss_pred             cceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCC
Q 016877          162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR  212 (381)
Q Consensus       162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r  212 (381)
                      |.++++++.+++|||+||....  ...++++++||+++++|+.+++||.||
T Consensus         2 R~~~s~v~~~~~iyv~GG~~~~--~~~~~~v~~yd~~t~~W~~~~~mp~pR   50 (50)
T PF13964_consen    2 RYGHSAVVVGGKIYVFGGYDNS--GKYSNDVERYDPETNTWEQLPPMPTPR   50 (50)
T ss_pred             CccCEEEEECCEEEEECCCCCC--CCccccEEEEcCCCCcEEECCCCCCCC
Confidence            7889999999999999998875  245899999999999999999999987

>KOG2437 consensus Muskelin [Signal transduction mechanisms]

Probab=99.32  E-value=1.3e-13  Score=125.73  Aligned_cols=170  Identities=15%  Similarity=0.136  Sum_probs=122.4

Q ss_pred             HHHHhhheeEcC--EEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCC
Q 016877           23 FVMILGFALVAD--FFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPEL  100 (381)
Q Consensus        23 ~~~~~~~~~~~~--~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (381)
                      .++-|-++.-.+  .||+.||++|...+.+++.|                                         +..++
T Consensus       260 ~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y-----------------------------------------~v~e~  298 (723)
T KOG2437|consen  260 MRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAY-----------------------------------------SVKEN  298 (723)
T ss_pred             ccCcceEEEeCCCcEEEEecCcccchhHHHHHhh-----------------------------------------cCCcc
Confidence            345677777655  99999999997765555555                                         44566


Q ss_pred             CeEEcc---CCCCCCCCceEEEECC--EEEEEecCCCC-----CCcccceEEEeCCCCeEecCCC--C--CCCCccceEE
Q 016877          101 KWEKMK---AAPVPRLDGAAIQIKN--LLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGRFD--M--PREMAHSHLG  166 (381)
Q Consensus       101 ~W~~l~---~~p~~r~~~~~~~~~~--~iyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~~--~--~~~~~r~~~~  166 (381)
                      .|+.+.   ..|-.|..|.++....  ++|+.|-+-+.     ....+++|.||..++.|..+.-  -  ..|..-+.|.
T Consensus       299 ~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHq  378 (723)
T KOG2437|consen  299 QWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQ  378 (723)
T ss_pred             eeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecce
Confidence            776653   4788999999987655  99999987432     2345689999999999998741  1  2344567789


Q ss_pred             EEEeCCE--EEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC----------CCCCCcccEEEEE--CCEEEEEccCCC
Q 016877          167 MVTDGRY--IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP----------LPVPRYAPATQLW--RGRLHVMGGSGE  232 (381)
Q Consensus       167 ~~~~~~~--iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~----------~p~~r~~~~~~~~--~~~lyv~GG~~~  232 (381)
                      +++.+++  |||+||..-........-+|.||.....|..++.          -...|.+|++-.+  ++++|++||...
T Consensus       379 M~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s  458 (723)
T KOG2437|consen  379 MCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRS  458 (723)
T ss_pred             eeEecCcceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCccc
Confidence            9998888  9999997433221236779999999999987752          1234666666554  678999999764


Q ss_pred             C
Q 016877          233 N  233 (381)
Q Consensus       233 ~  233 (381)
                      .
T Consensus       459 ~  459 (723)
T KOG2437|consen  459 K  459 (723)
T ss_pred             c
Confidence            3

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.18  E-value=2.6e-11  Score=77.81  Aligned_cols=47  Identities=34%  Similarity=0.604  Sum_probs=43.0

Q ss_pred             CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC
Q 016877          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  157 (381)
                      ||..|++++++++|||+||.+......+++++||+.+++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            68999999999999999999886777889999999999999999876

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=99.08  E-value=3.9e-10  Score=72.84  Aligned_cols=48  Identities=25%  Similarity=0.484  Sum_probs=42.1

Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL  219 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  219 (381)
                      +++||||||.+... ...++++|+||+.+++|++++++|.+|.+|++++
T Consensus         1 g~~~~vfGG~~~~~-~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDG-GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCC-CCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence            57899999988422 2458999999999999999999999999999986

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.06  E-value=1.9e-10  Score=73.76  Aligned_cols=47  Identities=40%  Similarity=0.700  Sum_probs=41.5

Q ss_pred             ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC
Q 016877          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP  209 (381)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p  209 (381)
                      +|..+++++.+++||++||.++..  ..++++++||+++++|+.+++||
T Consensus         1 pR~~~~~~~~~~~iyv~GG~~~~~--~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    1 PRSGHAAVVVGNKIYVIGGYDGNN--QPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             -BBSEEEEEETTEEEEEEEBESTS--SBEEEEEEEETTTTEEEEEEEES
T ss_pred             CCccCEEEEECCEEEEEeeecccC--ceeeeEEEEeCCCCEEEEcCCCC
Confidence            378899999999999999998832  45899999999999999999886

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.04  E-value=6.6e-10  Score=71.75  Aligned_cols=47  Identities=26%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             CCCCceEEEECCEEEEEecC--CCCCCcccceEEEeCCCCeEecCCCCC
Q 016877          111 PRLDGAAIQIKNLLYVFAGY--GSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~--~~~~~~~~~~~~yd~~~~~W~~~~~~~  157 (381)
                      ||..|++++++++|||+||.  +......+++++||+++++|+.++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            68999999999999999999  445556788999999999999998775

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=99.03  E-value=2.7e-10  Score=73.72  Aligned_cols=47  Identities=34%  Similarity=0.569  Sum_probs=32.1

Q ss_pred             CCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC
Q 016877          111 PRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP  157 (381)
Q Consensus       111 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~  157 (381)
                      ||..|+++.+ +++|||+||.+.....++++|+||+++++|++++++|
T Consensus         1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            6999999998 5899999999887677889999999999999998776

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=99.01  E-value=1.2e-09  Score=70.47  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=40.8

Q ss_pred             ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC
Q 016877          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP  209 (381)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p  209 (381)
                      +|..|++++.+++||++||..........++++.||+++++|++++++|
T Consensus         1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g   49 (49)
T PF07646_consen    1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG   49 (49)
T ss_pred             CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence            3788999999999999999922222345899999999999999998875

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=98.89  E-value=4.9e-09  Score=67.64  Aligned_cols=47  Identities=30%  Similarity=0.448  Sum_probs=40.4

Q ss_pred             CCEEEEEecCC-CCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877          121 KNLLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus       121 ~~~iyv~GG~~-~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      +++|||+||.+ .....++++|+||+.+++|++++++|.  +|..|++++
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~--~R~~h~~~~   48 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP--PRSGHTATV   48 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC--CccceEEEE
Confidence            57899999998 456677899999999999999988877  588888875

>smart00612 Kelch Kelch domain

Probab=98.89  E-value=3.5e-09  Score=67.74  Aligned_cols=47  Identities=38%  Similarity=0.604  Sum_probs=41.2

Q ss_pred             EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECC
Q 016877          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG  222 (381)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~  222 (381)
                      +||++||..+.   ...+++++||+++++|+.+++||.+|..|+++++++
T Consensus         1 ~iyv~GG~~~~---~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG---QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC---ceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence            48999998652   347899999999999999999999999999988764

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=98.87  E-value=2.4e-09  Score=69.15  Aligned_cols=47  Identities=28%  Similarity=0.530  Sum_probs=30.3

Q ss_pred             cceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC
Q 016877          162 HSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV  210 (381)
Q Consensus       162 r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~  210 (381)
                      |..|+++.. +++||||||.+...  ..++++|+||+++++|++++++|.
T Consensus         2 R~~h~~~~~~~~~i~v~GG~~~~~--~~~~d~~~~d~~~~~W~~~~~~P~   49 (49)
T PF13418_consen    2 RYGHSAVSIGDNSIYVFGGRDSSG--SPLNDLWIFDIETNTWTRLPSMPS   49 (49)
T ss_dssp             -BS-EEEEE-TTEEEEE--EEE-T--EE---EEEEETTTTEEEE--SS--
T ss_pred             cceEEEEEEeCCeEEEECCCCCCC--cccCCEEEEECCCCEEEECCCCCC
Confidence            677888877 58999999998764  348999999999999999988873

>smart00612 Kelch Kelch domain

Probab=98.66  E-value=4.9e-08  Score=62.26  Aligned_cols=47  Identities=23%  Similarity=0.386  Sum_probs=38.3

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCC
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR  172 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~  172 (381)
                      +|||+||.... ...+++++||+.+++|+.+++|+.+  |..++++++++
T Consensus         1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~g   47 (47)
T smart00612        1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTP--RSGHGVAVING   47 (47)
T ss_pred             CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCc--cccceEEEeCC
Confidence            48999998753 4467899999999999999999884  77777777654

>PF13854 Kelch_5: Kelch motif

Probab=98.65  E-value=6.9e-08  Score=59.86  Aligned_cols=41  Identities=22%  Similarity=0.508  Sum_probs=36.1

Q ss_pred             CCCCCCCceEEEECCEEEEEecCCC-CCCcccceEEEeCCCC
Q 016877          108 APVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTDN  148 (381)
Q Consensus       108 ~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~~  148 (381)
                      +|.+|..|+++.++++|||+||.+. .+...+++|+||+.+.
T Consensus         1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf   42 (42)
T PF13854_consen    1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF   42 (42)
T ss_pred             CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence            5889999999999999999999984 6667789999998763

>PLN02772 guanylate kinase

Probab=98.53  E-value=7.7e-07  Score=82.01  Aligned_cols=87  Identities=17%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             CCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEe-CCEEEEEcCCCCCCCC
Q 016877          109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTD-GRYIYVVTGQYGPQCR  186 (381)
Q Consensus       109 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  186 (381)
                      ..|+..++++.+++++||+||.+......+.+++||..+++|..-.-+ ..|.+|.+|+++++ +++|+|+++....   
T Consensus        22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            358889999999999999999887665678899999999999985433 12335788888776 6899999864442   


Q ss_pred             CCcceEEEEECCCC
Q 016877          187 GPTAHTFVLDTETK  200 (381)
Q Consensus       187 ~~~~~~~~yd~~~~  200 (381)
                        -+++|.....|.
T Consensus        99 --~~~~w~l~~~t~  110 (398)
T PLN02772         99 --DDSIWFLEVDTP  110 (398)
T ss_pred             --ccceEEEEcCCH
Confidence              366787777653

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.50  E-value=3.8e-06  Score=72.99  Aligned_cols=152  Identities=16%  Similarity=0.240  Sum_probs=95.7

Q ss_pred             eEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC----CcEEeCC-CCCCCCcc
Q 016877          140 VDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET----KKWQDLP-PLPVPRYA  214 (381)
Q Consensus       140 ~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~  214 (381)
                      ...||+.+++++.+...... ....+ +..-++.+.+.||....     .+.+-.|++.+    ..|.+.+ .|..+|..
T Consensus        48 s~~yD~~tn~~rpl~v~td~-FCSgg-~~L~dG~ll~tGG~~~G-----~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDT-FCSGG-AFLPDGRLLQTGGDNDG-----NKAIRIFTPCTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEecCCCcEEeccCCCCC-cccCc-CCCCCCCEEEeCCCCcc-----ccceEEEecCCCCCCCCceECcccccCCCcc
Confidence            56799999999988644332 12222 34467899999997542     34566788765    6798886 58999999


Q ss_pred             cEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec----CCCCCCcceeEEEeCCEEEEEccCCCCCC
Q 016877          215 PATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI----PIPRGGPHRACVVVDDRLLVIGGQEGDFM  289 (381)
Q Consensus       215 ~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~----~~p~~~~~~~~~~~~~~l~v~GG~~~~~~  289 (381)
                      .++..+ +++++|+||.....+    +.|...  .-......|..+.    ..+...+-+..+.-+++||+++....   
T Consensus       121 pT~~~L~DG~vlIvGG~~~~t~----E~~P~~--~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s---  191 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNNPTY----EFWPPK--GPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS---  191 (243)
T ss_pred             ccceECCCCCEEEEeCcCCCcc----cccCCc--cCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc---
Confidence            988875 789999999874322    111100  0001111222222    23445544566677999999997642   


Q ss_pred             CCCCCCccccccCceeecCceeEeCCCCCe-EEcCCCCC
Q 016877          290 AKPGSPIFKCSRRNEVVYDDVYMLDDEMKW-KVLPSMPK  327 (381)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W-~~i~~~~~  327 (381)
                                         .+++| .++++ +.+|.+|.
T Consensus       192 -------------------~i~d~-~~n~v~~~lP~lPg  210 (243)
T PF07250_consen  192 -------------------IIYDY-KTNTVVRTLPDLPG  210 (243)
T ss_pred             -------------------EEEeC-CCCeEEeeCCCCCC
Confidence                               25555 56665 77887764

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PLN02772 guanylate kinase

Probab=98.50  E-value=9.1e-07  Score=81.54  Aligned_cols=79  Identities=20%  Similarity=0.272  Sum_probs=63.6

Q ss_pred             ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC---CCCCCCcccEEEEE-CCEEEEEccCCCCCCC
Q 016877          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP---PLPVPRYAPATQLW-RGRLHVMGGSGENRYT  236 (381)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~  236 (381)
                      ++..++++.+++++||+||.+..+.  .++.+++||+.+++|....   +.|.||.+|+++++ +++|+|+++....   
T Consensus        24 ~~~~~tav~igdk~yv~GG~~d~~~--~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~---   98 (398)
T PLN02772         24 PKNRETSVTIGDKTYVIGGNHEGNT--LSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP---   98 (398)
T ss_pred             CCCcceeEEECCEEEEEcccCCCcc--ccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC---
Confidence            3677899999999999999766432  3799999999999998865   68899999999988 6889999875532   


Q ss_pred             CCccceEee
Q 016877          237 PEVDHWSLA  245 (381)
Q Consensus       237 ~~~~~~~~~  245 (381)
                       ....|-+.
T Consensus        99 -~~~~w~l~  106 (398)
T PLN02772         99 -DDSIWFLE  106 (398)
T ss_pred             -ccceEEEE
Confidence             34556554

>PF13854 Kelch_5: Kelch motif

Probab=98.42  E-value=7.1e-07  Score=55.25  Aligned_cols=39  Identities=23%  Similarity=0.319  Sum_probs=32.6

Q ss_pred             CccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       160 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      .+|..|++++++++|||+||... .....++++|+||+.+
T Consensus         3 ~~R~~hs~~~~~~~iyi~GG~~~-~~~~~~~d~~~l~l~s   41 (42)
T PF13854_consen    3 SPRYGHSAVVVGNNIYIFGGYSG-NNNSYSNDLYVLDLPS   41 (42)
T ss_pred             CCccceEEEEECCEEEEEcCccC-CCCCEECcEEEEECCC
Confidence            36899999999999999999985 2224589999999876

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.39  E-value=0.00013  Score=63.83  Aligned_cols=181  Identities=14%  Similarity=0.214  Sum_probs=107.1

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCc----eEEEEC----C-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDG----AAIQIK----N-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM  160 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~----~~~~~~----~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~  160 (381)
                      ..+...||.+.+|..+++.+.++...    .....+    . ||..+....... ....+++|+..+++|+.+...+...
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~   92 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHH   92 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCc
Confidence            46889999999999998655432111    111122    2 566665432111 2346899999999999987443321


Q ss_pred             ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe-CCCCCCCC----cccEEEEECCEEEEEccCCCCCC
Q 016877          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD-LPPLPVPR----YAPATQLWRGRLHVMGGSGENRY  235 (381)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r----~~~~~~~~~~~lyv~GG~~~~~~  235 (381)
                      .... ..+.+++.+|-+.-.....   ....+..||..+.+|+. ++ +|..+    ....++.++++|.++.....   
T Consensus        93 ~~~~-~~v~~~G~lyw~~~~~~~~---~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~---  164 (230)
T TIGR01640        93 PLKS-RGVCINGVLYYLAYTLKTN---PDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKD---  164 (230)
T ss_pred             cccC-CeEEECCEEEEEEEECCCC---CcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCC---
Confidence            1122 2667899899876322211   11369999999999995 54 44332    23456678899888865432   


Q ss_pred             CCCccceEeeeecCCccCCceEEecCCC-----CCC--cceeEEEeCCEEEEEcc
Q 016877          236 TPEVDHWSLAVKDGKPLEKEWRTEIPIP-----RGG--PHRACVVVDDRLLVIGG  283 (381)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~W~~~~~~p-----~~~--~~~~~~~~~~~l~v~GG  283 (381)
                      ....+.|.++  +  ....+|++.-.++     .-.  .....+..+++|++.-.
T Consensus       165 ~~~~~IWvl~--d--~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~  215 (230)
T TIGR01640       165 TNNFDLWVLN--D--AGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCE  215 (230)
T ss_pred             CCcEEEEEEC--C--CCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeC
Confidence            1236778764  2  3345698752222     111  12345566788888664

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=98.32  E-value=0.0002  Score=62.66  Aligned_cols=198  Identities=13%  Similarity=0.148  Sum_probs=112.7

Q ss_pred             cceEEEeCCCCeEecCCCCCCCCc---cceEEEEEe---CC-EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC
Q 016877          138 SHVDIYNFTDNTWGGRFDMPREMA---HSHLGMVTD---GR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV  210 (381)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~~~~~~---r~~~~~~~~---~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~  210 (381)
                      ..+.++||.|.+|..+|+.+.+..   +...+....   +. |+..+.......   ....+++|+..++.|+.+...+.
T Consensus        14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~---~~~~~~Vys~~~~~Wr~~~~~~~   90 (230)
T TIGR01640        14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR---NQSEHQVYTLGSNSWRTIECSPP   90 (230)
T ss_pred             CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC---CCccEEEEEeCCCCccccccCCC
Confidence            358899999999999976543211   111111111   11 455443321111   23578999999999999874332


Q ss_pred             C-CcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC----cceeEEEeCCEEEEEccCC
Q 016877          211 P-RYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG----PHRACVVVDDRLLVIGGQE  285 (381)
Q Consensus       211 ~-r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~----~~~~~~~~~~~l~v~GG~~  285 (381)
                      . ......+.++|.||-+.-....     ...  ..+..||..+.+|++..++|...    .....+.++++|.++....
T Consensus        91 ~~~~~~~~v~~~G~lyw~~~~~~~-----~~~--~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~  163 (230)
T TIGR01640        91 HHPLKSRGVCINGVLYYLAYTLKT-----NPD--YFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKK  163 (230)
T ss_pred             CccccCCeEEECCEEEEEEEECCC-----CCc--EEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecC
Confidence            1 1122266789999988743221     111  13556678899999533334322    1345678899998876543


Q ss_pred             CCCCCCCCCCccccccCceeecCceeEeC--CCCCeEEcCCCCC---CCCC--cceEEEEECCEEEEEcccccccCCcee
Q 016877          286 GDFMAKPGSPIFKCSRRNEVVYDDVYMLD--DEMKWKVLPSMPK---PDSH--IEFAWVLVNNSIVIVGGTTEKHPTTKK  358 (381)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yd--~~~~W~~i~~~~~---~~~~--~~~~~~~~~~~l~v~GG~~~~~~~~~~  358 (381)
                      ...                  .-+||..+  ....|++.-.++.   +...  .....+..+++|++..... ..     
T Consensus       164 ~~~------------------~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~-~~-----  219 (230)
T TIGR01640       164 DTN------------------NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE-NP-----  219 (230)
T ss_pred             CCC------------------cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC-Cc-----
Confidence            210                  23688875  4567987543331   1111  1123366778888877531 11     


Q ss_pred             eeeecceEEEEcCCC
Q 016877          359 MVLVGEIFQFNLNTL  373 (381)
Q Consensus       359 ~~~~~~v~~yd~~~~  373 (381)
                          .-+..||+++|
T Consensus       220 ----~~~~~y~~~~~  230 (230)
T TIGR01640       220 ----FYIFYYNVGEN  230 (230)
T ss_pred             ----eEEEEEeccCC
Confidence                13899999875

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=98.25  E-value=3.9e-05  Score=66.71  Aligned_cols=151  Identities=17%  Similarity=0.262  Sum_probs=92.4

Q ss_pred             ceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec-CCCCCCcc
Q 016877          190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI-PIPRGGPH  268 (381)
Q Consensus       190 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~-~~p~~~~~  268 (381)
                      ...-.||+.+++++.+......-+...+..-++++++.||..+.  ...+..|+.   +.+..+..|.+.. .|...|.+
T Consensus        46 a~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p---~~~~~~~~w~e~~~~m~~~RWY  120 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTP---CTSDGTCDWTESPNDMQSGRWY  120 (243)
T ss_pred             EEEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEec---CCCCCCCCceECcccccCCCcc
Confidence            34568999999999887544444444445568999999998652  222333331   0012246798875 58888888


Q ss_pred             eeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEe-CC------CCCeEEcCCC--CCCCCCcceEEEE
Q 016877          269 RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DD------EMKWKVLPSM--PKPDSHIEFAWVL  338 (381)
Q Consensus       269 ~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~------~~~W~~i~~~--~~~~~~~~~~~~~  338 (381)
                      .+...+ +++++|+||.....                      |.| ++      ...|..+...  ..+....-...+.
T Consensus       121 pT~~~L~DG~vlIvGG~~~~t----------------------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~ll  178 (243)
T PF07250_consen  121 PTATTLPDGRVLIVGGSNNPT----------------------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLL  178 (243)
T ss_pred             ccceECCCCCEEEEeCcCCCc----------------------ccccCCccCCCCceeeecchhhhccCccccCceEEEc
Confidence            887765 88999999987331                      111 11      1122222211  1122222234478


Q ss_pred             ECCEEEEEcccccccCCceeeeeecceEEEEcCCCce-EEeecC
Q 016877          339 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVA-VLNAML  381 (381)
Q Consensus       339 ~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W-~~i~~l  381 (381)
                      .+++|++++...              ..+||+.++++ +.++.|
T Consensus       179 PdG~lFi~an~~--------------s~i~d~~~n~v~~~lP~l  208 (243)
T PF07250_consen  179 PDGNLFIFANRG--------------SIIYDYKTNTVVRTLPDL  208 (243)
T ss_pred             CCCCEEEEEcCC--------------cEEEeCCCCeEEeeCCCC
Confidence            899999998753              57889998876 555543

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=98.03  E-value=0.00097  Score=57.95  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=94.8

Q ss_pred             EEEEecCCCCCCcccceEEEeCCCCe--------Eec---CCCCCCCCccceEEEEEe--C--CEEEEEcCCCCCC--C-
Q 016877          124 LYVFAGYGSIDYVHSHVDIYNFTDNT--------WGG---RFDMPREMAHSHLGMVTD--G--RYIYVVTGQYGPQ--C-  185 (381)
Q Consensus       124 iyv~GG~~~~~~~~~~~~~yd~~~~~--------W~~---~~~~~~~~~r~~~~~~~~--~--~~iyv~GG~~~~~--~-  185 (381)
                      -++.||..+++.+.+++++....+..        ..+   +.++|.  +|++|++.++  .  ....+|||..-.-  . 
T Consensus        41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~--aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR  118 (337)
T PF03089_consen   41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPE--ARYGHTINVVHSRGKTACVLFGGRSYMPPGQR  118 (337)
T ss_pred             EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCc--ccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence            45678888888888888888766443        111   345555  6898887665  2  2477899974210  0 


Q ss_pred             --------CCCcceEEEEECCCCcEEe--CCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCc
Q 016877          186 --------RGPTAHTFVLDTETKKWQD--LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKE  255 (381)
Q Consensus       186 --------~~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (381)
                              ......|+..|++-...+.  ++.+......|.+..-+|.+|++||+.-.........|.+.+.-  +...-
T Consensus       119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdL--llGSP  196 (337)
T PF03089_consen  119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDL--LLGSP  196 (337)
T ss_pred             chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEee--cCCCc
Confidence                    1124567888888776543  45677788888888999999999998654333334445543221  11111


Q ss_pred             eEEecCCCCCCcceeEEE---eCCEEEEEccCCCC
Q 016877          256 WRTEIPIPRGGPHRACVV---VDDRLLVIGGQEGD  287 (381)
Q Consensus       256 W~~~~~~p~~~~~~~~~~---~~~~l~v~GG~~~~  287 (381)
                      ......++.+..-.++.+   -.++.+|+||+...
T Consensus       197 ~vsC~vl~~glSisSAIvt~~~~~e~iIlGGY~sd  231 (337)
T PF03089_consen  197 AVSCTVLQGGLSISSAIVTQTGPHEYIILGGYQSD  231 (337)
T ss_pred             eeEEEECCCCceEeeeeEeecCCCceEEEeccccc
Confidence            111112233322222221   14678889999755

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.95  E-value=0.012  Score=55.95  Aligned_cols=247  Identities=15%  Similarity=0.110  Sum_probs=128.6

Q ss_pred             hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCC--C--------CCCceeEEeee-cccccccccCcceEe
Q 016877           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNG--P--------QKGENIGVKTK-KDVVPKRILPATFQD   94 (381)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~--~--------~~~~~~~~~~~-~~~~~~~~~~~~~~~   94 (381)
                      .-++.++.+|+....      ..+.++|..+++  .......  .        +..-+....++ .+...   ....++.
T Consensus        64 sPvv~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~---~~g~l~a  134 (394)
T PRK11138         64 HPAVAYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS---EKGQVYA  134 (394)
T ss_pred             ccEEECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc---CCCEEEE
Confidence            457789999998642      368999999888  3322211  0        11111222222 33322   2346888


Q ss_pred             ecCCCC--CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEe
Q 016877           95 LPAPEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        95 ~~~~~~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      +|..+.  .|+.-.+  .+ ...+-++.++.+|+..+.       ..++.+|+++.+  |+.-...|....+...+-++.
T Consensus       135 ld~~tG~~~W~~~~~--~~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~  204 (394)
T PRK11138        135 LNAEDGEVAWQTKVA--GE-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA  204 (394)
T ss_pred             EECCCCCCcccccCC--Cc-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE
Confidence            987665  6865322  11 112224557888875431       358999998775  887543322111222233455


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCC--cEEeCCCCCCC--------CcccEEEEECCEEEEEccCCCCCCCCCcc
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVP--------RYAPATQLWRGRLHVMGGSGENRYTPEVD  240 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~--------r~~~~~~~~~~~lyv~GG~~~~~~~~~~~  240 (381)
                      ++.+|+..+         ...++.+|+++.  .|+.-...|..        ....+-++.++.+|+.+. ++       .
T Consensus       205 ~~~v~~~~~---------~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~-~g-------~  267 (394)
T PRK11138        205 FGGAIVGGD---------NGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAY-NG-------N  267 (394)
T ss_pred             CCEEEEEcC---------CCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEc-CC-------e
Confidence            677776433         234777888765  47643212211        011233467888888652 11       1


Q ss_pred             ceEeeeecCCccC--CceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-C--
Q 016877          241 HWSLAVKDGKPLE--KEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D--  315 (381)
Q Consensus       241 ~~~~~~~~~~~~~--~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~--  315 (381)
                      .+-     +|+.+  ..|+....  ..   ...+..+++||+....                       ..++.+| .  
T Consensus       268 l~a-----ld~~tG~~~W~~~~~--~~---~~~~~~~~~vy~~~~~-----------------------g~l~ald~~tG  314 (394)
T PRK11138        268 LVA-----LDLRSGQIVWKREYG--SV---NDFAVDGGRIYLVDQN-----------------------DRVYALDTRGG  314 (394)
T ss_pred             EEE-----EECCCCCEEEeecCC--Cc---cCcEEECCEEEEEcCC-----------------------CeEEEEECCCC
Confidence            111     22333  35875321  11   1346678999987532                       1378887 4  


Q ss_pred             CCCeEEcCCCCCCCCCcceEEEEECCEEEEEc
Q 016877          316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVG  347 (381)
Q Consensus       316 ~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~G  347 (381)
                      +..|+.-. +. .+.  ..+.++.++.||+..
T Consensus       315 ~~~W~~~~-~~-~~~--~~sp~v~~g~l~v~~  342 (394)
T PRK11138        315 VELWSQSD-LL-HRL--LTAPVLYNGYLVVGD  342 (394)
T ss_pred             cEEEcccc-cC-CCc--ccCCEEECCEEEEEe
Confidence            34686421 11 111  123356788888754

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=97.67  E-value=0.0052  Score=57.08  Aligned_cols=124  Identities=21%  Similarity=0.272  Sum_probs=80.4

Q ss_pred             EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCc--cceEee
Q 016877          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEV--DHWSLA  245 (381)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~--~~~~~~  245 (381)
                      ++.+++|+.++..         ....+||+++..-...|.++.+.....++.++++||++............  ..|  +
T Consensus        73 al~gskIv~~d~~---------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~F--E  141 (342)
T PF07893_consen   73 ALHGSKIVAVDQS---------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCF--E  141 (342)
T ss_pred             EecCCeEEEEcCC---------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeE--E
Confidence            3359999998653         33789999999988888888777777777889999999876432111110  133  3


Q ss_pred             eecCC--------ccCCceEEecCCCCCCc-------ceeEEEe-CCEEEE-EccCCCCCCCCCCCCccccccCceeecC
Q 016877          246 VKDGK--------PLEKEWRTEIPIPRGGP-------HRACVVV-DDRLLV-IGGQEGDFMAKPGSPIFKCSRRNEVVYD  308 (381)
Q Consensus       246 ~~~~~--------~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~l~v-~GG~~~~~~~~~~~~~~~~~~~~~~~~~  308 (381)
                      +..|+        ...-.|+.+++.|-...       -.+.+++ +..|+| .-+...                      
T Consensus       142 ~l~~~~~~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~----------------------  199 (342)
T PF07893_consen  142 ALVYRPPPDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRW----------------------  199 (342)
T ss_pred             EeccccccccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCce----------------------
Confidence            33332        23346788766443221       2345666 677888 443321                      


Q ss_pred             ceeEeC-CCCCeEEcCC
Q 016877          309 DVYMLD-DEMKWKVLPS  324 (381)
Q Consensus       309 ~v~~yd-~~~~W~~i~~  324 (381)
                      -.|.|| .+.+|+....
T Consensus       200 GTysfDt~~~~W~~~Gd  216 (342)
T PF07893_consen  200 GTYSFDTESHEWRKHGD  216 (342)
T ss_pred             EEEEEEcCCcceeeccc
Confidence            169999 8899999975

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.60  E-value=0.067  Score=50.48  Aligned_cols=211  Identities=14%  Similarity=0.123  Sum_probs=106.2

Q ss_pred             hhheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--C
Q 016877           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--K  101 (381)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~  101 (381)
                      .+.++.++.+|+.+. +     ..+.+||+.+++  ........ ..-+....++ .+...   ....++.+|..+.  .
T Consensus        59 ~~p~v~~~~v~v~~~-~-----g~v~a~d~~tG~~~W~~~~~~~-~~~~p~v~~~~v~v~~---~~g~l~ald~~tG~~~  128 (377)
T TIGR03300        59 LQPAVAGGKVYAADA-D-----GTVVALDAETGKRLWRVDLDER-LSGGVGADGGLVFVGT---EKGEVIALDAEDGKEL  128 (377)
T ss_pred             cceEEECCEEEEECC-C-----CeEEEEEccCCcEeeeecCCCC-cccceEEcCCEEEEEc---CCCEEEEEECCCCcEe
Confidence            345778898888763 2     368999999888  22222111 1111122222 33222   2346888887655  5


Q ss_pred             eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTG  179 (381)
Q Consensus       102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG  179 (381)
                      |+.-..  .. .....+..++.+|+..+       ...++++|+++.  .|+.-...+....+...+.+..++.+|+ |.
T Consensus       129 W~~~~~--~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~  197 (377)
T TIGR03300       129 WRAKLS--SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GF  197 (377)
T ss_pred             eeeccC--ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-EC
Confidence            865322  11 11223445777777543       134889999866  4876432221001222334556676654 32


Q ss_pred             CCCCCCCCCcceEEEEECCCC--cEEeCCCCCCCC--------cccEEEEECCEEEEEccCCCCCCCCCccceEeeeecC
Q 016877          180 QYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG  249 (381)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~  249 (381)
                      .        ...+..+|+++.  .|+.--..+...        ...+..+.++.+|+.... +     ....++.     
T Consensus       198 ~--------~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~-g-----~l~a~d~-----  258 (377)
T TIGR03300       198 A--------GGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ-G-----RVAALDL-----  258 (377)
T ss_pred             C--------CCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC-C-----EEEEEEC-----
Confidence            1        235888998765  476432222111        122334567888886421 1     1222221     


Q ss_pred             CccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877          250 KPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG  282 (381)
Q Consensus       250 ~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G  282 (381)
                      ...+..|+....   .  ....+..+++||+..
T Consensus       259 ~tG~~~W~~~~~---~--~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       259 RSGRVLWKRDAS---S--YQGPAVDDNRLYVTD  286 (377)
T ss_pred             CCCcEEEeeccC---C--ccCceEeCCEEEEEC
Confidence            122345765311   1  123456788998864

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination

Probab=97.43  E-value=0.0049  Score=53.70  Aligned_cols=112  Identities=13%  Similarity=0.226  Sum_probs=67.4

Q ss_pred             EEEEcCCCCCCCCCCcceEEEEECCCCc--------E---EeCCCCCCCCcccEEEEE--CC--EEEEEccCCCCC-CCC
Q 016877          174 IYVVTGQYGPQCRGPTAHTFVLDTETKK--------W---QDLPPLPVPRYAPATQLW--RG--RLHVMGGSGENR-YTP  237 (381)
Q Consensus       174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~--------W---~~~~~~p~~r~~~~~~~~--~~--~lyv~GG~~~~~-~~~  237 (381)
                      -+|.||.+.....  ++.+|........        .   ..+.+.|.+|++|++-++  .+  ...+|||+.-.. -..
T Consensus        41 YlIHGGrTPNNEl--S~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qR  118 (337)
T PF03089_consen   41 YLIHGGRTPNNEL--SSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQR  118 (337)
T ss_pred             EEecCCcCCCccc--ccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCcccc
Confidence            4467887665443  5666665554322        1   223579999999999876  33  388889975321 123


Q ss_pred             CccceEeeeec------CCccCCceEE--ecCCCCCCcceeEEEeCCEEEEEccCCCC
Q 016877          238 EVDHWSLAVKD------GKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLVIGGQEGD  287 (381)
Q Consensus       238 ~~~~~~~~~~~------~~~~~~~W~~--~~~~p~~~~~~~~~~~~~~l~v~GG~~~~  287 (381)
                      .++.|+-.+.+      .|.+-...+.  ++.+..+.+.|.+..-++.+|++||..-.
T Consensus       119 TTenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~  176 (337)
T PF03089_consen  119 TTENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLE  176 (337)
T ss_pred             chhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEcc
Confidence            44555543211      1233333322  34455666677778889999999998643

V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.40  E-value=0.13  Score=48.92  Aligned_cols=211  Identities=15%  Similarity=0.122  Sum_probs=107.9

Q ss_pred             hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--Ce
Q 016877           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--KW  102 (381)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~W  102 (381)
                      +.++.++.+|+.+ .+     ..+.++|.++++  ...+...+.... -.+.++ .+...   ....++.+|+.+.  .|
T Consensus       115 ~~~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~~~ss-P~v~~~~v~v~~---~~g~l~ald~~tG~~~W  184 (394)
T PRK11138        115 GVTVAGGKVYIGS-EK-----GQVYALNAEDGEVAWQTKVAGEALSR-PVVSDGLVLVHT---SNGMLQALNESDGAVKW  184 (394)
T ss_pred             ccEEECCEEEEEc-CC-----CEEEEEECCCCCCcccccCCCceecC-CEEECCEEEEEC---CCCEEEEEEccCCCEee
Confidence            4567788998754 22     368999999988  332221110000 011112 22221   2346888998776  58


Q ss_pred             EEccCCCC--CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCC------ccceEEEEEeCC
Q 016877          103 EKMKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREM------AHSHLGMVTDGR  172 (381)
Q Consensus       103 ~~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~------~r~~~~~~~~~~  172 (381)
                      +.-...|.  .+...+-++.++.+|+..+.       ..+..+|+++.+  |+.-...+...      .....+-++.++
T Consensus       185 ~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~  257 (394)
T PRK11138        185 TVNLDVPSLTLRGESAPATAFGGAIVGGDN-------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGG  257 (394)
T ss_pred             eecCCCCcccccCCCCCEEECCEEEEEcCC-------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECC
Confidence            76433322  12223334556777764431       247788888764  87532222100      011233456789


Q ss_pred             EEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      .+|+.+.         ...++.+|+++.+  |+.-  ....   ...++.+++||+....        ...+-++   ..
T Consensus       258 ~vy~~~~---------~g~l~ald~~tG~~~W~~~--~~~~---~~~~~~~~~vy~~~~~--------g~l~ald---~~  312 (394)
T PRK11138        258 VVYALAY---------NGNLVALDLRSGQIVWKRE--YGSV---NDFAVDGGRIYLVDQN--------DRVYALD---TR  312 (394)
T ss_pred             EEEEEEc---------CCeEEEEECCCCCEEEeec--CCCc---cCcEEECCEEEEEcCC--------CeEEEEE---CC
Confidence            9998652         2358899998754  8753  2111   1345678899987531        1122221   11


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG  282 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G  282 (381)
                      ..+..|+.....  .+...+.+..+++||+..
T Consensus       313 tG~~~W~~~~~~--~~~~~sp~v~~g~l~v~~  342 (394)
T PRK11138        313 GGVELWSQSDLL--HRLLTAPVLYNGYLVVGD  342 (394)
T ss_pred             CCcEEEcccccC--CCcccCCEEECCEEEEEe
Confidence            223457643211  112224456788988753

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.88  E-value=0.41  Score=45.16  Aligned_cols=169  Identities=13%  Similarity=0.137  Sum_probs=86.2

Q ss_pred             heeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCC--CeE
Q 016877           29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPEL--KWE  103 (381)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~--~W~  103 (381)
                      .++.++.+|+.. .+     +.+.++|+.++.  ............. ...++ .+...   ....++.+|+.+.  .|+
T Consensus       101 p~v~~~~v~v~~-~~-----g~l~ald~~tG~~~W~~~~~~~~~~~p-~v~~~~v~v~~---~~g~l~a~d~~tG~~~W~  170 (377)
T TIGR03300       101 VGADGGLVFVGT-EK-----GEVIALDAEDGKELWRAKLSSEVLSPP-LVANGLVVVRT---NDGRLTALDAATGERLWT  170 (377)
T ss_pred             eEEcCCEEEEEc-CC-----CEEEEEECCCCcEeeeeccCceeecCC-EEECCEEEEEC---CCCeEEEEEcCCCceeeE
Confidence            345577777643 23     368999998887  2222211100000 11111 22221   2346788888765  586


Q ss_pred             EccCCCC--CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCC------ccceEEEEEeCCE
Q 016877          104 KMKAAPV--PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREM------AHSHLGMVTDGRY  173 (381)
Q Consensus       104 ~l~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~------~r~~~~~~~~~~~  173 (381)
                      .-...+.  .+...+.+..++.+| +|..+      ..+..+|+++.  .|+.-...+...      .....+.+..++.
T Consensus       171 ~~~~~~~~~~~~~~sp~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~  243 (377)
T TIGR03300       171 YSRVTPALTLRGSASPVIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQ  243 (377)
T ss_pred             EccCCCceeecCCCCCEEECCEEE-EECCC------CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCE
Confidence            5433221  122233455566655 44321      24888998776  486532222100      0112234456888


Q ss_pred             EEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCCCCCCCCcccEEEEECCEEEEEc
Q 016877          174 IYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPVPRYAPATQLWRGRLHVMG  228 (381)
Q Consensus       174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~lyv~G  228 (381)
                      +|+...         ...++.||+++.+  |+.-.  +   .....++.++++|+..
T Consensus       244 vy~~~~---------~g~l~a~d~~tG~~~W~~~~--~---~~~~p~~~~~~vyv~~  286 (377)
T TIGR03300       244 VYAVSY---------QGRVAALDLRSGRVLWKRDA--S---SYQGPAVDDNRLYVTD  286 (377)
T ss_pred             EEEEEc---------CCEEEEEECCCCcEEEeecc--C---CccCceEeCCEEEEEC
Confidence            888642         2458899987654  76531  1   1223446788898874

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=96.64  E-value=0.073  Score=49.49  Aligned_cols=112  Identities=15%  Similarity=0.163  Sum_probs=73.4

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcc----cceEEE--eC--------CCCeEecCCCC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH----SHVDIY--NF--------TDNTWGGRFDM  156 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~----~~~~~y--d~--------~~~~W~~~~~~  156 (381)
                      ....||+.+..-..++.++.+.....++.++++||++..........    ...|++  ++        ..-.|+.+++.
T Consensus        87 ~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~LP~P  166 (342)
T PF07893_consen   87 RTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRSLPPP  166 (342)
T ss_pred             CeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEcCCCC
Confidence            47799999988777777877777777788899999998764322110    034555  32        22368888775


Q ss_pred             CCCCccc-----eEEEEEe-CCEEEEE-cCCCCCCCCCCcceEEEEECCCCcEEeCCC--CCC
Q 016877          157 PREMAHS-----HLGMVTD-GRYIYVV-TGQYGPQCRGPTAHTFVLDTETKKWQDLPP--LPV  210 (381)
Q Consensus       157 ~~~~~r~-----~~~~~~~-~~~iyv~-GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~--~p~  210 (381)
                      |......     -.+-+++ +..|+|- -|..        .-.+.||.++.+|+++.+  ||.
T Consensus       167 Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~--------~GTysfDt~~~~W~~~GdW~LPF  221 (342)
T PF07893_consen  167 PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR--------WGTYSFDTESHEWRKHGDWMLPF  221 (342)
T ss_pred             CccccCCcccceEEEEEEecCCeEEEEecCCc--------eEEEEEEcCCcceeeccceecCc
Confidence            5432211     2334445 7889983 2211        248999999999999985  553

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.53  E-value=0.47  Score=41.22  Aligned_cols=209  Identities=21%  Similarity=0.283  Sum_probs=113.9

Q ss_pred             cceEeecCCCC--CeEEccCCCCCCCCce--EEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccc
Q 016877           90 ATFQDLPAPEL--KWEKMKAAPVPRLDGA--AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHS  163 (381)
Q Consensus        90 ~~~~~~~~~~~--~W~~l~~~p~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~  163 (381)
                      ..+..+|+.+.  .|+.  .+..+.....  .+..++++|+..+       ...+.++|..+.+  |+.-.  +.+   .
T Consensus         3 g~l~~~d~~tG~~~W~~--~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~--~~~---~   68 (238)
T PF13360_consen    3 GTLSALDPRTGKELWSY--DLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDL--PGP---I   68 (238)
T ss_dssp             SEEEEEETTTTEEEEEE--ECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEEC--SSC---G
T ss_pred             CEEEEEECCCCCEEEEE--ECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeec--ccc---c
Confidence            35677887665  5765  2222233333  3346889998842       2459999998775  77643  332   1


Q ss_pred             eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EE-eCCCCCC--CCcccEEEEECCEEEEEccCCCCCCCCC
Q 016877          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQ-DLPPLPV--PRYAPATQLWRGRLHVMGGSGENRYTPE  238 (381)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~-~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~~~~~  238 (381)
                      ....+..++.+|+...         .+.++.+|.++.+  |+ .....+.  .+......+.++.+|+....      ..
T Consensus        69 ~~~~~~~~~~v~v~~~---------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------g~  133 (238)
T PF13360_consen   69 SGAPVVDGGRVYVGTS---------DGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSS------GK  133 (238)
T ss_dssp             GSGEEEETTEEEEEET---------TSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETC------SE
T ss_pred             cceeeecccccccccc---------eeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEecc------Cc
Confidence            1124778899988752         2468999977654  88 4433232  23344455567777777531      11


Q ss_pred             ccceEeeeecCCcc--CCceEEecCCCCCCc--------ceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 016877          239 VDHWSLAVKDGKPL--EKEWRTEIPIPRGGP--------HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  308 (381)
Q Consensus       239 ~~~~~~~~~~~~~~--~~~W~~~~~~p~~~~--------~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  308 (381)
                      ...       +|+.  ...|+.....+....        ....+..++.+|+..+..                       
T Consensus       134 l~~-------~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g-----------------------  183 (238)
T PF13360_consen  134 LVA-------LDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG-----------------------  183 (238)
T ss_dssp             EEE-------EETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS-----------------------
T ss_pred             EEE-------EecCCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC-----------------------
Confidence            111       1233  335766544443221        123344467888876543                       


Q ss_pred             ceeEeC-CCC--CeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc--eE
Q 016877          309 DVYMLD-DEM--KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--AV  376 (381)
Q Consensus       309 ~v~~yd-~~~--~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~  376 (381)
                      .++.+| .+.  .|+..  ...    ........++.||+.. ..            ..++++|+++++  |+
T Consensus       184 ~~~~~d~~tg~~~w~~~--~~~----~~~~~~~~~~~l~~~~-~~------------~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  184 RVVAVDLATGEKLWSKP--ISG----IYSLPSVDGGTLYVTS-SD------------GRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             SEEEEETTTTEEEEEEC--SS-----ECECEECCCTEEEEEE-TT------------TEEEEEETTTTEEEEE
T ss_pred             eEEEEECCCCCEEEEec--CCC----ccCCceeeCCEEEEEe-CC------------CEEEEEECCCCCEEeE
Confidence            145556 444  48443  211    1111355567777776 32            148999999876  64

...

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.83  E-value=0.17  Score=45.41  Aligned_cols=101  Identities=15%  Similarity=0.140  Sum_probs=60.5

Q ss_pred             EEEecCCCCCC-cccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          125 YVFAGYGSIDY-VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       125 yv~GG~~~~~~-~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      ||-|-....+. ....+..||+.+.+|.....--.   -.-..+... ++++|+.|-..-.+.  ....+-.||.++.+|
T Consensus         2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~---G~V~~l~~~~~~~Llv~G~ft~~~~--~~~~la~yd~~~~~w   76 (281)
T PF12768_consen    2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS---GTVTDLQWASNNQLLVGGNFTLNGT--NSSNLATYDFKNQTW   76 (281)
T ss_pred             EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce---EEEEEEEEecCCEEEEEEeeEECCC--CceeEEEEecCCCee
Confidence            44444444332 23569999999999999764322   222344433 778888775443321  246688999999999


Q ss_pred             EeCCC-----CCCCCcccEEEEE-CCEEEEEccC
Q 016877          203 QDLPP-----LPVPRYAPATQLW-RGRLHVMGGS  230 (381)
Q Consensus       203 ~~~~~-----~p~~r~~~~~~~~-~~~lyv~GG~  230 (381)
                      +.++.     +|.+......... ...+++.|..
T Consensus        77 ~~~~~~~s~~ipgpv~a~~~~~~d~~~~~~aG~~  110 (281)
T PF12768_consen   77 SSLGGGSSNSIPGPVTALTFISNDGSNFWVAGRS  110 (281)
T ss_pred             eecCCcccccCCCcEEEEEeeccCCceEEEecee
Confidence            88875     2334322222222 3457777764

>PF12768 Rax2: Cortical protein marker for cell polarity

Probab=95.58  E-value=0.43  Score=42.82  Aligned_cols=110  Identities=16%  Similarity=0.146  Sum_probs=64.3

Q ss_pred             CcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecC-----
Q 016877          188 PTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP-----  261 (381)
Q Consensus       188 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~-----  261 (381)
                      ....+..||+.+.+|.....--.. .-.++... +++||+.|-......    .  ...+..||..+.+|+.+..     
T Consensus        14 ~C~~lC~yd~~~~qW~~~g~~i~G-~V~~l~~~~~~~Llv~G~ft~~~~----~--~~~la~yd~~~~~w~~~~~~~s~~   86 (281)
T PF12768_consen   14 PCPGLCLYDTDNSQWSSPGNGISG-TVTDLQWASNNQLLVGGNFTLNGT----N--SSNLATYDFKNQTWSSLGGGSSNS   86 (281)
T ss_pred             CCCEEEEEECCCCEeecCCCCceE-EEEEEEEecCCEEEEEEeeEECCC----C--ceeEEEEecCCCeeeecCCccccc
Confidence            478899999999999998754222 22344434 778888886543221    1  1223445577999988755     


Q ss_pred             CCCCCcceeEEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeCCCCCeEEcCC
Q 016877          262 IPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS  324 (381)
Q Consensus       262 ~p~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~W~~i~~  324 (381)
                      +|.......... -..++++.|.....                   ..-+..| +..+|+.+..
T Consensus        87 ipgpv~a~~~~~~d~~~~~~aG~~~~g-------------------~~~l~~~-dGs~W~~i~~  130 (281)
T PF12768_consen   87 IPGPVTALTFISNDGSNFWVAGRSANG-------------------STFLMKY-DGSSWSSIGS  130 (281)
T ss_pred             CCCcEEEEEeeccCCceEEEeceecCC-------------------CceEEEE-cCCceEeccc
Confidence            233321111111 23467777765221                   2237778 4778988865

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.56  E-value=1.4  Score=38.16  Aligned_cols=157  Identities=19%  Similarity=0.168  Sum_probs=85.7

Q ss_pred             eeeeeeCCCce--eeecCCCCCCCcee--EE-eee-cccccccccCcceEeecCCCC--CeEEccCCCCCCCCceEEEEC
Q 016877           50 IASNWSPYHNS--IILPNNGPQKGENI--GV-KTK-KDVVPKRILPATFQDLPAPEL--KWEKMKAAPVPRLDGAAIQIK  121 (381)
Q Consensus        50 ~~~~~d~~~~~--~~~p~~~~~~~~~~--~~-~~~-~~~~~~~~~~~~~~~~~~~~~--~W~~l~~~p~~r~~~~~~~~~  121 (381)
                      .+.++|+.+++  ....... ......  .. .++ .+..   .....++.+|+.+.  .|+.-.  +.+-... ....+
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~---~~~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~~~~   76 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP-GIGGPVATAVPDGGRVYVA---SGDGNLYALDAKTGKVLWRFDL--PGPISGA-PVVDG   76 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS-SCSSEEETEEEETTEEEEE---ETTSEEEEEETTTSEEEEEEEC--SSCGGSG-EEEET
T ss_pred             EEEEEECCCCCEEEEEECCC-CCCCccceEEEeCCEEEEE---cCCCEEEEEECCCCCEEEEeec--cccccce-eeecc
Confidence            67889998888  4443311 122222  22 222 3332   24457889998666  575532  2222222 46678


Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCC--eEe-cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDN--TWG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~-~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +.+|+....       +.++++|.++.  .|+ .....+..........++.++.+|+...         ...+..+|++
T Consensus        77 ~~v~v~~~~-------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~l~~~d~~  140 (238)
T PF13360_consen   77 GRVYVGTSD-------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS---------SGKLVALDPK  140 (238)
T ss_dssp             TEEEEEETT-------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET---------CSEEEEEETT
T ss_pred             cccccccce-------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec---------cCcEEEEecC
Confidence            899887721       25899997776  498 4433222111334445556888877643         3568999998


Q ss_pred             CCc--EEeCCCCCCCCc--------ccEEEEECCEEEEEcc
Q 016877          199 TKK--WQDLPPLPVPRY--------APATQLWRGRLHVMGG  229 (381)
Q Consensus       199 ~~~--W~~~~~~p~~r~--------~~~~~~~~~~lyv~GG  229 (381)
                      +.+  |+.-...+....        .....+.++.+|+..+
T Consensus       141 tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  181 (238)
T PF13360_consen  141 TGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSG  181 (238)
T ss_dssp             TTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECC
T ss_pred             CCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcC
Confidence            765  766433332111        1233344678888865

...

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=95.37  E-value=0.65  Score=43.49  Aligned_cols=135  Identities=16%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC---CCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR---EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      -+.+++|.++.-    .++..|-++|.  .+.++..   |.  .....+..+....+++|.        ..-++.||.++
T Consensus       226 plllvaG~d~~l----rifqvDGk~N~--~lqS~~l~~fPi--~~a~f~p~G~~~i~~s~r--------rky~ysyDle~  289 (514)
T KOG2055|consen  226 PLLLVAGLDGTL----RIFQVDGKVNP--KLQSIHLEKFPI--QKAEFAPNGHSVIFTSGR--------RKYLYSYDLET  289 (514)
T ss_pred             ceEEEecCCCcE----EEEEecCccCh--hheeeeeccCcc--ceeeecCCCceEEEeccc--------ceEEEEeeccc
Confidence            688888887532    36777777776  3333321   21  122223334436666663        35689999999


Q ss_pred             CcEEeCCCCC--CCCcccEE-EEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCC
Q 016877          200 KKWQDLPPLP--VPRYAPAT-QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDD  276 (381)
Q Consensus       200 ~~W~~~~~~p--~~r~~~~~-~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~  276 (381)
                      .+-+++.++-  ..+.-... +..++.++++-|..+.-+..            ...+++|-.--.++-..........+.
T Consensus       290 ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lL------------hakT~eli~s~KieG~v~~~~fsSdsk  357 (514)
T KOG2055|consen  290 AKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLL------------HAKTKELITSFKIEGVVSDFTFSSDSK  357 (514)
T ss_pred             cccccccCCCCcccchhheeEecCCCCeEEEcccCceEEee------------hhhhhhhhheeeeccEEeeEEEecCCc
Confidence            9988887542  11222222 23455677777765431111            133455533222332222222223456


Q ss_pred             EEEEEccCC
Q 016877          277 RLLVIGGQE  285 (381)
Q Consensus       277 ~l~v~GG~~  285 (381)
                      +|++.||+.
T Consensus       358 ~l~~~~~~G  366 (514)
T KOG2055|consen  358 ELLASGGTG  366 (514)
T ss_pred             EEEEEcCCc
Confidence            688888764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=95.30  E-value=2  Score=38.34  Aligned_cols=140  Identities=16%  Similarity=0.127  Sum_probs=65.1

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecC-CCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEE-ccCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPN-NGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEK-MKAA  108 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~-l~~~  108 (381)
                      +.+|+.++.++     .+..||+.++.  ..+.. ..++. .....-+. .+..+.  ....+..+|..+.+... ++..
T Consensus         1 ~~~~~s~~~d~-----~v~~~d~~t~~~~~~~~~~~~~~~-l~~~~dg~~l~~~~~--~~~~v~~~d~~~~~~~~~~~~~   72 (300)
T TIGR03866         1 EKAYVSNEKDN-----TISVIDTATLEVTRTFPVGQRPRG-ITLSKDGKLLYVCAS--DSDTIQVIDLATGEVIGTLPSG   72 (300)
T ss_pred             CcEEEEecCCC-----EEEEEECCCCceEEEEECCCCCCc-eEECCCCCEEEEEEC--CCCeEEEEECCCCcEEEeccCC
Confidence            35777777554     77889998876  33332 11221 11111111 111111  23457788887766543 2211


Q ss_pred             CCCCCCceEEEE-C-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE-EeCCEEEEEcCCCCCCC
Q 016877          109 PVPRLDGAAIQI-K-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV-TDGRYIYVVTGQYGPQC  185 (381)
Q Consensus       109 p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~  185 (381)
                      ..+   ..++.. + +.+|+.++.+      ..+.+||+.+.+-..  .++..  ....+++ .-++++++++..+.   
T Consensus        73 ~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~--~~~~~--~~~~~~~~~~dg~~l~~~~~~~---  136 (300)
T TIGR03866        73 PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLA--EIPVG--VEPEGMAVSPDGKIVVNTSETT---  136 (300)
T ss_pred             CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEe--EeeCC--CCcceEEECCCCCEEEEEecCC---
Confidence            111   122222 3 3566665432      248889998754222  12211  1112233 34566666654221   


Q ss_pred             CCCcceEEEEECCCCc
Q 016877          186 RGPTAHTFVLDTETKK  201 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~  201 (381)
                          +.+..||..+.+
T Consensus       137 ----~~~~~~d~~~~~  148 (300)
T TIGR03866       137 ----NMAHFIDTKTYE  148 (300)
T ss_pred             ----CeEEEEeCCCCe
Confidence                335667877654

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=94.76  E-value=1.5  Score=38.53  Aligned_cols=86  Identities=21%  Similarity=0.123  Sum_probs=51.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ++.+|+.--.      ...++.+|+.+++-..+. .+.     ..+++.  .++.+|+...          .....+|++
T Consensus        11 ~g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~-----~~G~~~~~~~g~l~v~~~----------~~~~~~d~~   68 (246)
T PF08450_consen   11 DGRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG-----PNGMAFDRPDGRLYVADS----------GGIAVVDPD   68 (246)
T ss_dssp             TTEEEEEETT------TTEEEEEETTTTEEEEEE-SSS-----EEEEEEECTTSEEEEEET----------TCEEEEETT
T ss_pred             CCEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC-----CceEEEEccCCEEEEEEc----------CceEEEecC
Confidence            4677776321      246999999988766532 222     223444  4788888753          234667999


Q ss_pred             CCcEEeCCCCC-----CCCcccEEEEECCEEEEEc
Q 016877          199 TKKWQDLPPLP-----VPRYAPATQLWRGRLHVMG  228 (381)
Q Consensus       199 ~~~W~~~~~~p-----~~r~~~~~~~~~~~lyv~G  228 (381)
                      +.+++.+...+     ..+.+-.++--++.||+--
T Consensus        69 ~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~  103 (246)
T PF08450_consen   69 TGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTD  103 (246)
T ss_dssp             TTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEE
T ss_pred             CCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEe
Confidence            99998876552     2233333333477888764

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PRK13684 Ycf48-like protein; Provisional

Probab=93.61  E-value=6.1  Score=36.65  Aligned_cols=156  Identities=12%  Similarity=0.010  Sum_probs=74.1

Q ss_pred             CCCCeEEccC-CCCCCCCc-eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEE
Q 016877           98 PELKWEKMKA-APVPRLDG-AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYI  174 (381)
Q Consensus        98 ~~~~W~~l~~-~p~~r~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~i  174 (381)
                      .-.+|++... +|..+... .+...++..++.|..       ..+++=+-.-.+|+++... ..|. ......+..++.+
T Consensus        74 gG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~-------g~i~~S~DgG~tW~~~~~~~~~~~-~~~~i~~~~~~~~  145 (334)
T PRK13684         74 GGETWEERSLDLPEENFRLISISFKGDEGWIVGQP-------SLLLHTTDGGKNWTRIPLSEKLPG-SPYLITALGPGTA  145 (334)
T ss_pred             CCCCceECccCCcccccceeeeEEcCCcEEEeCCC-------ceEEEECCCCCCCeEccCCcCCCC-CceEEEEECCCcc
Confidence            4568988653 43333222 233334556666521       1122222234589987532 1211 1222333344556


Q ss_pred             EEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCC
Q 016877          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEK  254 (381)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  254 (381)
                      |+.|.         ...+++=+-.-.+|+.+.... .-..+.+....+..+++.|..+.-       +..    .+....
T Consensus       146 ~~~g~---------~G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G~i-------~~s----~~~gg~  204 (334)
T PRK13684        146 EMATN---------VGAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRGNF-------YST----WEPGQT  204 (334)
T ss_pred             eeeec---------cceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCceE-------EEE----cCCCCC
Confidence            76653         233555555677899886433 223344555445555554433311       110    123345


Q ss_pred             ceEEecCCCCCCcceeEE-EeCCEEEEEcc
Q 016877          255 EWRTEIPIPRGGPHRACV-VVDDRLLVIGG  283 (381)
Q Consensus       255 ~W~~~~~~p~~~~~~~~~-~~~~~l~v~GG  283 (381)
                      +|+......... -.+++ .-+++++++|.
T Consensus       205 tW~~~~~~~~~~-l~~i~~~~~g~~~~vg~  233 (334)
T PRK13684        205 AWTPHQRNSSRR-LQSMGFQPDGNLWMLAR  233 (334)
T ss_pred             eEEEeeCCCccc-ceeeeEcCCCCEEEEec
Confidence            798775432222 22333 34678888864

>PRK13684 Ycf48-like protein; Provisional

Probab=93.37  E-value=6.6  Score=36.39  Aligned_cols=205  Identities=11%  Similarity=0.125  Sum_probs=98.9

Q ss_pred             eEeecCCCCCeEEccCC-CCCCCCceEEEEC-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           92 FQDLPAPELKWEKMKAA-PVPRLDGAAIQIK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~~-p~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      +++-.-...+|+++... ..+.....+..++ +.+++.|..       ..+++=+-.-.+|+.+.....   -..+.+..
T Consensus       111 i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~~~~---g~~~~i~~  180 (334)
T PRK13684        111 LLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVEDAA---GVVRNLRR  180 (334)
T ss_pred             EEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcCCCc---ceEEEEEE
Confidence            34433345699987532 2333333343343 356665532       124444445679998764332   23344444


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEE-EECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeee
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFV-LDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      ..+..|+..|..+        .++. .|....+|+.+.. +..+...+++. -++.++++|.....       .+.    
T Consensus       181 ~~~g~~v~~g~~G--------~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~-------~~~----  240 (334)
T PRK13684        181 SPDGKYVAVSSRG--------NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQI-------RFN----  240 (334)
T ss_pred             CCCCeEEEEeCCc--------eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEE-------EEc----
Confidence            4444555544333        1332 2455568998853 44444445444 46778888643211       010    


Q ss_pred             cCCccCCceEEecC-CCCCCc-ceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeE-eCCCCCeEEcC
Q 016877          248 DGKPLEKEWRTEIP-IPRGGP-HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYM-LDDEMKWKVLP  323 (381)
Q Consensus       248 ~~~~~~~~W~~~~~-~p~~~~-~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-yd~~~~W~~i~  323 (381)
                       -+..-.+|+.+.. ...... .++++.. ++.++++|... .                      ++. .|...+|+.++
T Consensus       241 -s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G-~----------------------v~~S~d~G~tW~~~~  296 (334)
T PRK13684        241 -DPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG-T----------------------LLVSKDGGKTWEKDP  296 (334)
T ss_pred             -cCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-e----------------------EEEeCCCCCCCeECC
Confidence             0122457876432 111111 1223322 66788877532 1                      333 33678999975


Q ss_pred             CCCCCCCCcceEEEEECCEEEEEcccc
Q 016877          324 SMPKPDSHIEFAWVLVNNSIVIVGGTT  350 (381)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~l~v~GG~~  350 (381)
                      ............+...++++|++|...
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~~~G~~G  323 (334)
T PRK13684        297 VGEEVPSNFYKIVFLDPEKGFVLGQRG  323 (334)
T ss_pred             cCCCCCcceEEEEEeCCCceEEECCCc
Confidence            321111122122334467888877644

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=93.10  E-value=3  Score=36.80  Aligned_cols=183  Identities=17%  Similarity=0.192  Sum_probs=96.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeC-----CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNF-----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL  195 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y  195 (381)
                      .+++|++.+..+.     .++.|..     ..++..+.-.+|.+  -.+.+.++.++.+|-.=        ...+.+.+|
T Consensus        30 ~~~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~--~~GtG~vVYngslYY~~--------~~s~~Ivky   94 (250)
T PF02191_consen   30 SEKIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYP--WQGTGHVVYNGSLYYNK--------YNSRNIVKY   94 (250)
T ss_pred             CCCEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEece--eccCCeEEECCcEEEEe--------cCCceEEEE
Confidence            4579998886543     2444432     22233333334443  33456677888888652        126889999


Q ss_pred             ECCCCcEEeCCCCCCCCcc------------cEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccC----CceEEe
Q 016877          196 DTETKKWQDLPPLPVPRYA------------PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE----KEWRTE  259 (381)
Q Consensus       196 d~~~~~W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~W~~~  259 (381)
                      |+.+++=.....+|.+...            .-.++-++-|+|+=.....       .-.+.+...||.+    .+|..-
T Consensus        95 dL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~-------~g~ivvskld~~tL~v~~tw~T~  167 (250)
T PF02191_consen   95 DLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDN-------NGNIVVSKLDPETLSVEQTWNTS  167 (250)
T ss_pred             ECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCC-------CCcEEEEeeCcccCceEEEEEec
Confidence            9998875422223322222            2334445567777433221       1123344445543    456642


Q ss_pred             cCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEE
Q 016877          260 IPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL  338 (381)
Q Consensus       260 ~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~  338 (381)
                        .++.... .+.++=|.||++.......                  ..-.|.|| .+++=. ...++.+......+++.
T Consensus       168 --~~k~~~~-naFmvCGvLY~~~s~~~~~------------------~~I~yafDt~t~~~~-~~~i~f~~~~~~~~~l~  225 (250)
T PF02191_consen  168 --YPKRSAG-NAFMVCGVLYATDSYDTRD------------------TEIFYAFDTYTGKEE-DVSIPFPNPYGNISMLS  225 (250)
T ss_pred             --cCchhhc-ceeeEeeEEEEEEECCCCC------------------cEEEEEEECCCCcee-ceeeeeccccCceEeee
Confidence              3333322 3455667899987765331                  11247888 544433 23445444444455566


Q ss_pred             EC---CEEEEEc
Q 016877          339 VN---NSIVIVG  347 (381)
Q Consensus       339 ~~---~~l~v~G  347 (381)
                      ++   .+||+.-
T Consensus       226 YNP~dk~LY~wd  237 (250)
T PF02191_consen  226 YNPRDKKLYAWD  237 (250)
T ss_pred             ECCCCCeEEEEE
Confidence            64   7888874

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=92.68  E-value=5.9  Score=37.55  Aligned_cols=136  Identities=15%  Similarity=0.144  Sum_probs=66.5

Q ss_pred             EEECCEEEEEecCCCCCCcccceEEEeCCCC-eEecCCCCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCCcceEEEE
Q 016877          118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGRFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVL  195 (381)
Q Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~y  195 (381)
                      ...++.|++.||+++      .+-.||..+. .|..--+-..|.   ..-+++-+ ..|-..||          +.+-++
T Consensus       162 ~~~~~hivvtGsYDg------~vrl~DtR~~~~~v~elnhg~pV---e~vl~lpsgs~iasAgG----------n~vkVW  222 (487)
T KOG0310|consen  162 SPANDHIVVTGSYDG------KVRLWDTRSLTSRVVELNHGCPV---ESVLALPSGSLIASAGG----------NSVKVW  222 (487)
T ss_pred             ccCCCeEEEecCCCc------eEEEEEeccCCceeEEecCCCce---eeEEEcCCCCEEEEcCC----------CeEEEE
Confidence            344678999999985      3566788777 444322222222   12233333 34445555          556677


Q ss_pred             ECCCCcEEeCCCCC-CCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEE-
Q 016877          196 DTETKKWQDLPPLP-VPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV-  272 (381)
Q Consensus       196 d~~~~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~-  272 (381)
                      |..+.. +.+..+- .-..--++... ++.-++.||.+.     .+..|+         +..|+.+-.+..+..-.+++ 
T Consensus       223 Dl~~G~-qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd---------~t~~Kvv~s~~~~~pvLsiav  287 (487)
T KOG0310|consen  223 DLTTGG-QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD---------TTNYKVVHSWKYPGPVLSIAV  287 (487)
T ss_pred             EecCCc-eehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE---------ccceEEEEeeecccceeeEEe
Confidence            776543 1111111 11111222222 345666666554     344444         33444443322222222433 


Q ss_pred             EeCCEEEEEccCCCC
Q 016877          273 VVDDRLLVIGGQEGD  287 (381)
Q Consensus       273 ~~~~~l~v~GG~~~~  287 (381)
                      .-++.-.++|..++.
T Consensus       288 s~dd~t~viGmsnGl  302 (487)
T KOG0310|consen  288 SPDDQTVVIGMSNGL  302 (487)
T ss_pred             cCCCceEEEecccce
Confidence            346778888887654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=92.54  E-value=6.4  Score=34.03  Aligned_cols=61  Identities=5%  Similarity=-0.059  Sum_probs=30.0

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +.+++.++.+      ..+.+||+.+.+-.. +....    ..-.++.... +.+++.|..+        ..+..||..+
T Consensus       105 ~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~l~~~~~~--------~~i~i~d~~~  166 (289)
T cd00200         105 GRILSSSSRD------KTIKVWDVETGKCLTTLRGHT----DWVNSVAFSPDGTFVASSSQD--------GTIKLWDLRT  166 (289)
T ss_pred             CCEEEEecCC------CeEEEEECCCcEEEEEeccCC----CcEEEEEEcCcCCEEEEEcCC--------CcEEEEEccc
Confidence            3666666532      358888987544322 22111    1122334443 4444444312        3478888874


Q ss_pred             C
Q 016877          200 K  200 (381)
Q Consensus       200 ~  200 (381)
                      .
T Consensus       167 ~  167 (289)
T cd00200         167 G  167 (289)
T ss_pred             c
Confidence            3

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=92.20  E-value=6.3  Score=34.52  Aligned_cols=123  Identities=14%  Similarity=0.080  Sum_probs=67.7

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC---CCCccc
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP---REMAHS  163 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~~~r~  163 (381)
                      ...++++++.+.+-+.+ ..+.   -.+++..  ++++|+....        .+.++|+.+++++.+...+   .+..+.
T Consensus        21 ~~~i~~~~~~~~~~~~~-~~~~---~~G~~~~~~~g~l~v~~~~--------~~~~~d~~~g~~~~~~~~~~~~~~~~~~   88 (246)
T PF08450_consen   21 GGRIYRVDPDTGEVEVI-DLPG---PNGMAFDRPDGRLYVADSG--------GIAVVDPDTGKVTVLADLPDGGVPFNRP   88 (246)
T ss_dssp             TTEEEEEETTTTEEEEE-ESSS---EEEEEEECTTSEEEEEETT--------CEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred             CCEEEEEECCCCeEEEE-ecCC---CceEEEEccCCEEEEEEcC--------ceEEEecCCCcEEEEeeccCCCcccCCC
Confidence            34788888887754332 2222   2333433  6788887642        2566799999999876653   133455


Q ss_pred             eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEE-C-CEEEEE
Q 016877          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLW-R-GRLHVM  227 (381)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~-~-~~lyv~  227 (381)
                      +-.++.-++.||+---............++++++. .+.+.+. .+..|   ..++.. + +.||+.
T Consensus        89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~  151 (246)
T PF08450_consen   89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVA  151 (246)
T ss_dssp             EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEE
T ss_pred             ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeec
Confidence            55566667888875321111111111679999999 6655543 22222   233333 3 357775

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=91.59  E-value=12  Score=35.44  Aligned_cols=126  Identities=10%  Similarity=0.067  Sum_probs=71.8

Q ss_pred             ccCcceEeecCCCCCeEEccCCC--CCCCCce-EEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccc
Q 016877           87 ILPATFQDLPAPELKWEKMKAAP--VPRLDGA-AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS  163 (381)
Q Consensus        87 ~~~~~~~~~~~~~~~W~~l~~~p--~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~  163 (381)
                      .....++.||..+.+-+++.++.  +.+.-.. .++.++.++++-|..      ..+..+..+|+.|..--.++.  .-.
T Consensus       277 ~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lLhakT~eli~s~KieG--~v~  348 (514)
T KOG2055|consen  277 GRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLLHAKTKELITSFKIEG--VVS  348 (514)
T ss_pred             ccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEeehhhhhhhhheeeecc--EEe
Confidence            34456889999998888877643  1112111 234455566666543      246777888888876545554  223


Q ss_pred             eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE-EECCEEEEEcc
Q 016877          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ-LWRGRLHVMGG  229 (381)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~lyv~GG  229 (381)
                      ..+....+..||+.||.         ..||.+|..++.-...=.-.-..++-+.| ..++.++..|.
T Consensus       349 ~~~fsSdsk~l~~~~~~---------GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS  406 (514)
T KOG2055|consen  349 DFTFSSDSKELLASGGT---------GEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGS  406 (514)
T ss_pred             eEEEecCCcEEEEEcCC---------ceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEecc
Confidence            44445566788888873         45999999987421110011122333444 34666555554

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=91.54  E-value=7.4  Score=34.51  Aligned_cols=152  Identities=11%  Similarity=0.092  Sum_probs=84.1

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP  111 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~  111 (381)
                      ++.||+.|-. |     ..-+.||.++. ...|...-...+|+++.-+..+--..+..+.+...|+....=+.++ .|.+
T Consensus       158 ~G~lWFt~q~-G-----~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p-~P~~  230 (353)
T COG4257         158 WGNLWFTGQI-G-----AYGRLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVP-QPNA  230 (353)
T ss_pred             CccEEEeecc-c-----cceecCcccCceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceec-CCCc
Confidence            4678888751 1     23488999998 5455443334556655433222222233345667777765322222 2333


Q ss_pred             CCC-ceE--EEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCC
Q 016877          112 RLD-GAA--IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGP  188 (381)
Q Consensus       112 r~~-~~~--~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~  188 (381)
                      ... ..-  ..-.+++.+.      ..-...+.+|||...+|.+-+ +|..-+|.....+-.-+.+++.-        ..
T Consensus       231 ~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~sW~eyp-LPgs~arpys~rVD~~grVW~se--------a~  295 (353)
T COG4257         231 LKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVTSWIEYP-LPGSKARPYSMRVDRHGRVWLSE--------AD  295 (353)
T ss_pred             ccccccccccCccCcEEEe------ccCCceeeEeCcccccceeee-CCCCCCCcceeeeccCCcEEeec--------cc
Confidence            111 111  1124466664      111346899999999999863 44322344444444456677641        22


Q ss_pred             cceEEEEECCCCcEEeCC
Q 016877          189 TAHTFVLDTETKKWQDLP  206 (381)
Q Consensus       189 ~~~~~~yd~~~~~W~~~~  206 (381)
                      .+.+.+||+++.+.+.++
T Consensus       296 agai~rfdpeta~ftv~p  313 (353)
T COG4257         296 AGAIGRFDPETARFTVLP  313 (353)
T ss_pred             cCceeecCcccceEEEec
Confidence            577899999999988764

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=90.51  E-value=15  Score=34.21  Aligned_cols=236  Identities=14%  Similarity=0.179  Sum_probs=103.4

Q ss_pred             ceEeec--CCCCCeEEccCCCCCCCCceEEEE---CCEEEEEecCCCCCCcccceEEEeCCCC-eEecC---------CC
Q 016877           91 TFQDLP--APELKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGR---------FD  155 (381)
Q Consensus        91 ~~~~~~--~~~~~W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~---------~~  155 (381)
                      .+..|.  ..+.+.+.+...+........+.+   +..||+.- +.     ..++.+|++..+ +-...         .+
T Consensus        63 ~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~van-y~-----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~  136 (345)
T PF10282_consen   63 GVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVAN-YG-----GGSVSVFPLDDDGSLGEVVQTVRHEGSGP  136 (345)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEE-TT-----TTEEEEEEECTTSEEEEEEEEEESEEEES
T ss_pred             CEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEE-cc-----CCeEEEEEccCCcccceeeeecccCCCCC
Confidence            444444  443567776665533333333333   33666643 21     234667777653 21111         01


Q ss_pred             CC-CCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCC--CCCCCCcccEEEEE--CCEEEE
Q 016877          156 MP-REMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLP--PLPVPRYAPATQLW--RGRLHV  226 (381)
Q Consensus       156 ~~-~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~--~~p~~r~~~~~~~~--~~~lyv  226 (381)
                      -+ .......|.+...  ++.+|+.-   -     -.+.++.|+.....  .+...  .+|..-.-..++..  +..+||
T Consensus       137 ~~~rq~~~h~H~v~~~pdg~~v~v~d---l-----G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv  208 (345)
T PF10282_consen  137 NPDRQEGPHPHQVVFSPDGRFVYVPD---L-----GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYV  208 (345)
T ss_dssp             STTTTSSTCEEEEEE-TTSSEEEEEE---T-----TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEE
T ss_pred             cccccccccceeEEECCCCCEEEEEe---c-----CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEE
Confidence            11 1111234555554  34677763   1     14678888887665  54432  22221111122332  347899


Q ss_pred             EccCCCCCCCCCccceEeeeecCCccCCceEEe---cCCCCCC----cceeEEEe--CCEEEEEccCCCCCCCCCCCCcc
Q 016877          227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTE---IPIPRGG----PHRACVVV--DDRLLVIGGQEGDFMAKPGSPIF  297 (381)
Q Consensus       227 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~---~~~p~~~----~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~~  297 (381)
                      +.-..     +.+..|++     ++.+.+++..   +.+|...    ....++..  +..||+-....+           
T Consensus       209 ~~e~s-----~~v~v~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~-----------  267 (345)
T PF10282_consen  209 VNELS-----NTVSVFDY-----DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN-----------  267 (345)
T ss_dssp             EETTT-----TEEEEEEE-----ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT-----------
T ss_pred             ecCCC-----CcEEEEee-----cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC-----------
Confidence            86433     23444433     3445555543   3343321    22233333  445777543211           


Q ss_pred             ccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceE
Q 016877          298 KCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAV  376 (381)
Q Consensus       298 ~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~  376 (381)
                               .-.+|..| .+.+-+.+...+..-......++-.+++.++++......         -.++..|.+++.++
T Consensus       268 ---------sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~---------v~vf~~d~~tG~l~  329 (345)
T PF10282_consen  268 ---------SISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNT---------VSVFDIDPDTGKLT  329 (345)
T ss_dssp             ---------EEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTE---------EEEEEEETTTTEEE
T ss_pred             ---------EEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCe---------EEEEEEeCCCCcEE
Confidence                     11244554 444555554333211111111123355555555444332         13555677888887


Q ss_pred             Eee
Q 016877          377 LNA  379 (381)
Q Consensus       377 ~i~  379 (381)
                      .+.
T Consensus       330 ~~~  332 (345)
T PF10282_consen  330 PVG  332 (345)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            654

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=89.38  E-value=15  Score=32.60  Aligned_cols=66  Identities=15%  Similarity=0.244  Sum_probs=35.7

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      ++|+.++.+      ..+.++|+.+++-...-..... .+ .....-.+..+|+.++.        .+.+..||..+.+.
T Consensus         2 ~~~~s~~~d------~~v~~~d~~t~~~~~~~~~~~~-~~-~l~~~~dg~~l~~~~~~--------~~~v~~~d~~~~~~   65 (300)
T TIGR03866         2 KAYVSNEKD------NTISVIDTATLEVTRTFPVGQR-PR-GITLSKDGKLLYVCASD--------SDTIQVIDLATGEV   65 (300)
T ss_pred             cEEEEecCC------CEEEEEECCCCceEEEEECCCC-CC-ceEECCCCCEEEEEECC--------CCeEEEEECCCCcE
Confidence            567777654      2588889887654332221111 12 11111223457777642        24588899988765


Q ss_pred             Ee
Q 016877          203 QD  204 (381)
Q Consensus       203 ~~  204 (381)
                      ..
T Consensus        66 ~~   67 (300)
T TIGR03866        66 IG   67 (300)
T ss_pred             EE
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=88.99  E-value=4.4  Score=31.59  Aligned_cols=82  Identities=12%  Similarity=0.239  Sum_probs=54.8

Q ss_pred             EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEee
Q 016877          169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLA  245 (381)
Q Consensus       169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~  245 (381)
                      ..+|-+|-..-...    .....+.+||.++.+|+.++-   .........++.++|+|-++.-..... ....+.|.++
T Consensus         3 cinGvly~~a~~~~----~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~~~iWvLe   77 (129)
T PF08268_consen    3 CINGVLYWLAWSED----SDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE-PDSIDIWVLE   77 (129)
T ss_pred             EECcEEEeEEEECC----CCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC-cceEEEEEee
Confidence            46777776554311    125778999999999988863   235567777888999998875443221 2346777765


Q ss_pred             eecCCccCCceEEe
Q 016877          246 VKDGKPLEKEWRTE  259 (381)
Q Consensus       246 ~~~~~~~~~~W~~~  259 (381)
                          |..+.+|...
T Consensus        78 ----D~~k~~Wsk~   87 (129)
T PF08268_consen   78 ----DYEKQEWSKK   87 (129)
T ss_pred             ----ccccceEEEE
Confidence                4557899865

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.59  E-value=6.7  Score=34.73  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=63.9

Q ss_pred             ceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877          163 SHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH  241 (381)
Q Consensus       163 ~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  241 (381)
                      +--++.. .++.+|.--|..+      -+.+.+||+++.+=....++|..-.+=.++.++++||.+-=.++.     .-.
T Consensus        46 FTQGL~~~~~g~LyESTG~yG------~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~-----~f~  114 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYG------QSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGT-----GFV  114 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTT------EEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSE-----EEE
T ss_pred             cCccEEecCCCEEEEeCCCCC------cEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCe-----EEE
Confidence            3345555 6889999888766      467999999999877767788888888899999999999644332     112


Q ss_pred             eEeeeecCCccCCceEEecC--CCCCCcceeEEEeCCEEEEEccCC
Q 016877          242 WSLAVKDGKPLEKEWRTEIP--IPRGGPHRACVVVDDRLLVIGGQE  285 (381)
Q Consensus       242 ~~~~~~~~~~~~~~W~~~~~--~p~~~~~~~~~~~~~~l~v~GG~~  285 (381)
                      |       |+.  +.+.+..  .+..+.  +.+..+..|++-.|.+
T Consensus       115 y-------d~~--tl~~~~~~~y~~EGW--GLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen  115 Y-------DPN--TLKKIGTFPYPGEGW--GLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             E-------ETT--TTEEEEEEE-SSS----EEEECSSCEEEE-SSS
T ss_pred             E-------ccc--cceEEEEEecCCcce--EEEcCCCEEEEECCcc
Confidence            2       222  2333322  233333  6777788888877754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=88.38  E-value=6.9  Score=34.65  Aligned_cols=96  Identities=15%  Similarity=0.197  Sum_probs=62.2

Q ss_pred             ECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCcccc
Q 016877          220 WRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKC  299 (381)
Q Consensus       220 ~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~  299 (381)
                      .++.+|.--|..+..   ....       +|+.+++-....++|...++-+++.++++||..--.++             
T Consensus        54 ~~g~LyESTG~yG~S---~l~~-------~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~-------------  110 (264)
T PF05096_consen   54 DDGTLYESTGLYGQS---SLRK-------VDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEG-------------  110 (264)
T ss_dssp             ETTEEEEEECSTTEE---EEEE-------EETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSS-------------
T ss_pred             CCCEEEEeCCCCCcE---EEEE-------EECCCCcEEEEEECCccccceeEEEECCEEEEEEecCC-------------
Confidence            578999998876531   2222       24677777777788888888899999999999875543             


Q ss_pred             ccCceeecCceeEeCCCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccc
Q 016877          300 SRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTT  350 (381)
Q Consensus       300 ~~~~~~~~~~v~~yd~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~  350 (381)
                               ..+.|| .++.+.+...+.+...-  +++..+..|++--|.+
T Consensus       111 ---------~~f~yd-~~tl~~~~~~~y~~EGW--GLt~dg~~Li~SDGS~  149 (264)
T PF05096_consen  111 ---------TGFVYD-PNTLKKIGTFPYPGEGW--GLTSDGKRLIMSDGSS  149 (264)
T ss_dssp             ---------EEEEEE-TTTTEEEEEEE-SSS----EEEECSSCEEEE-SSS
T ss_pred             ---------eEEEEc-cccceEEEEEecCCcce--EEEcCCCEEEEECCcc
Confidence                     378886 34566776665554443  4566677888888854

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=87.58  E-value=27  Score=33.36  Aligned_cols=102  Identities=15%  Similarity=0.098  Sum_probs=52.0

Q ss_pred             ECCEEEEEecCCCCCCcccceEEEeCCCCeEe-cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          120 IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWG-GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       120 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      .++.+++.|+.+.      -+-.+|..+..-. .+.....- -|+ .++.-.++.|++.||+++.        +-.||..
T Consensus       121 ~d~t~l~s~sDd~------v~k~~d~s~a~v~~~l~~htDY-VR~-g~~~~~~~hivvtGsYDg~--------vrl~DtR  184 (487)
T KOG0310|consen  121 QDNTMLVSGSDDK------VVKYWDLSTAYVQAELSGHTDY-VRC-GDISPANDHIVVTGSYDGK--------VRLWDTR  184 (487)
T ss_pred             cCCeEEEecCCCc------eEEEEEcCCcEEEEEecCCcce-eEe-eccccCCCeEEEecCCCce--------EEEEEec
Confidence            5778999987543      2334455444421 11111111 132 2344467789999999883        5568877


Q ss_pred             CCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          199 TKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       199 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      +.+ ..+-.+.....--.++.+ .+.+++..|      .+.+.+|++
T Consensus       185 ~~~-~~v~elnhg~pVe~vl~lpsgs~iasAg------Gn~vkVWDl  224 (487)
T KOG0310|consen  185 SLT-SRVVELNHGCPVESVLALPSGSLIASAG------GNSVKVWDL  224 (487)
T ss_pred             cCC-ceeEEecCCCceeeEEEcCCCCEEEEcC------CCeEEEEEe
Confidence            763 222222222111223333 335555444      235778876

>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes

Probab=87.40  E-value=20  Score=31.58  Aligned_cols=255  Identities=15%  Similarity=0.103  Sum_probs=106.6

Q ss_pred             heeEcCEEEE--ecC-CCCCcccceeeeeeCCCce-eeecC----CCCCC------CceeEEeee-ccc-------cccc
Q 016877           29 FALVADFFWA--SSS-KFTSSYLNIASNWSPYHNS-IILPN----NGPQK------GENIGVKTK-KDV-------VPKR   86 (381)
Q Consensus        29 ~~~~~~~ly~--~GG-~~~~~~~~~~~~~d~~~~~-~~~p~----~~~~~------~~~~~~~~~-~~~-------~~~~   86 (381)
                      +-|.++.||+  .+| +-|...|...+.-....++ ...|.    .+|..      .+++.+++. .+.       ....
T Consensus        21 aFVy~~VIYAPfM~~~RHGv~~LhvaWVkSgDdG~TWttPEwLtd~H~~yptvnyHCmSMGv~~NRLfa~iEtR~~a~~k  100 (367)
T PF12217_consen   21 AFVYDNVIYAPFMAGDRHGVDNLHVAWVKSGDDGQTWTTPEWLTDLHPDYPTVNYHCMSMGVVGNRLFAVIETRTVASNK  100 (367)
T ss_dssp             -EEETTEEEEEEEEESSSSSTT-EEEEEEESSTTSS----EESS---TTTTTEEEE-B-EEEETTEEEEEEEEEETTT--
T ss_pred             ceeecCeeecccccccccCccceEEEEEEecCCCCcccCchhhhhcCCCCCccceeeeeeeeecceeeEEEeehhhhhhh
Confidence            3467888875  344 5576777776666666666 44444    22221      233333333 221       1111


Q ss_pred             ccCcceE-eecCCCCCeEE--ccCCCC-------CCCCceEEEECCEEEEEecCCCCCCcccc-eEEEeC----CCCeEe
Q 016877           87 ILPATFQ-DLPAPELKWEK--MKAAPV-------PRLDGAAIQIKNLLYVFAGYGSIDYVHSH-VDIYNF----TDNTWG  151 (381)
Q Consensus        87 ~~~~~~~-~~~~~~~~W~~--l~~~p~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~~-~~~yd~----~~~~W~  151 (381)
                      .....++ +--...+.|+.  |+.+|.       .-.-|+.+.+++.-|.+|=.++.-.+..- +..|..    ....-+
T Consensus       101 m~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~sp~~~vr  180 (367)
T PF12217_consen  101 MVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFASPGVFVR  180 (367)
T ss_dssp             EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-TT--EE
T ss_pred             hhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccCCcceee
Confidence            1111111 11234567854  444443       33457888888888888865443322111 222211    111111


Q ss_pred             -cCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEECCEEEEEcc
Q 016877          152 -GRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGG  229 (381)
Q Consensus       152 -~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG  229 (381)
                       .++.- ........++-.+++++|+.---....  ..-+.+.+-+..-..|+.+. +-..-....-.+.+++.||+||-
T Consensus       181 r~i~se-y~~~AsEPCvkyY~g~LyLtTRgt~~~--~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~mFgs  257 (367)
T PF12217_consen  181 RIIPSE-YERNASEPCVKYYDGVLYLTTRGTLPT--NPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYMFGS  257 (367)
T ss_dssp             EE--GG-G-TTEEEEEEEEETTEEEEEEEES-TT--S---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEEEEE
T ss_pred             eechhh-hccccccchhhhhCCEEEEEEcCcCCC--CCcceeeeecccCCchhhccccccccccCCCceeeCCEEEEEec
Confidence             22211 111345567788999999986322221  12356777777778898775 21222333345678999999986


Q ss_pred             CCC----------CCCC---CCccceEeeeecCCccCCceEEecC------CCCCCcce-eEEEeCCEE-EEEccCCC
Q 016877          230 SGE----------NRYT---PEVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHR-ACVVVDDRL-LVIGGQEG  286 (381)
Q Consensus       230 ~~~----------~~~~---~~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~l-~v~GG~~~  286 (381)
                      ...          .+|.   |.+-.-...+.+..++.-+|..+..      .-.+..+. ++|+-++-| |+|||.+.
T Consensus       258 ERA~~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~KD~~lyy~FGgED~  335 (367)
T PF12217_consen  258 ERAENEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVVKDGWLYYIFGGEDF  335 (367)
T ss_dssp             -SSTT-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEEETTEEEEEEEEB-S
T ss_pred             cccccccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEECCEEEEEecCccc
Confidence            432          1121   1111122334444566777876532      12222233 344556665 67898764

This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=87.23  E-value=19  Score=31.33  Aligned_cols=150  Identities=20%  Similarity=0.264  Sum_probs=79.8

Q ss_pred             CeEEccCCC-----CCCCCceEEE-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC-CE
Q 016877          101 KWEKMKAAP-----VPRLDGAAIQ-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG-RY  173 (381)
Q Consensus       101 ~W~~l~~~p-----~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~-~~  173 (381)
                      -|+...|+.     .|-....... -.+.|+..||.       ..+++.|+++++.++.-.-.   ..+-|+++.-+ +-
T Consensus       100 lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD-------~~~y~~dlE~G~i~r~~rGH---tDYvH~vv~R~~~~  169 (325)
T KOG0649|consen  100 LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGD-------GVIYQVDLEDGRIQREYRGH---TDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhcCccccCcccCCccceeEeccCCCcEEEecCC-------eEEEEEEecCCEEEEEEcCC---cceeeeeeecccCc
Confidence            576665543     3333322222 35688888873       34889999999988752222   24556676632 22


Q ss_pred             EEEEcCCCCCCCCCCcceEEEEECCCCcEEeC-C-----CCCCCCccc--EEEEECCEEEEEccCCCCCCCCCccceEee
Q 016877          174 IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL-P-----PLPVPRYAP--ATQLWRGRLHVMGGSGENRYTPEVDHWSLA  245 (381)
Q Consensus       174 iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~-~-----~~p~~r~~~--~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~  245 (381)
                      -.+.|+.++        .+-.+|.+|.+=..+ .     .+..|..+.  .+...+....|.||..      ....|.+.
T Consensus       170 qilsG~EDG--------tvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgGp------~lslwhLr  235 (325)
T KOG0649|consen  170 QILSGAEDG--------TVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGGP------KLSLWHLR  235 (325)
T ss_pred             ceeecCCCc--------cEEEEeccccceeEEeccccChhhcCcccCceeEEEeccCceEEecCCC------ceeEEecc
Confidence            234566555        255677777765433 1     122222222  4445566677777743      34556642


Q ss_pred             eecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccC
Q 016877          246 VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ  284 (381)
Q Consensus       246 ~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~  284 (381)
                             ..+=+.+-|.|...   ..+.+.+...++||.
T Consensus       236 -------sse~t~vfpipa~v---~~v~F~~d~vl~~G~  264 (325)
T KOG0649|consen  236 -------SSESTCVFPIPARV---HLVDFVDDCVLIGGE  264 (325)
T ss_pred             -------CCCceEEEecccce---eEeeeecceEEEecc
Confidence                   33333344444432   345665666666664

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=86.70  E-value=27  Score=32.46  Aligned_cols=94  Identities=18%  Similarity=0.107  Sum_probs=48.3

Q ss_pred             EEecCCC-CCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEE--ECCCC
Q 016877          126 VFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVL--DTETK  200 (381)
Q Consensus       126 v~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~y--d~~~~  200 (381)
                      ++|++.. ...-. .++.||.++.+++.+......  ....-++.  .++.||+.......     ...+..|  +.++.
T Consensus         3 ~vgsy~~~~~~gI-~~~~~d~~~g~l~~~~~~~~~--~~Ps~l~~~~~~~~LY~~~e~~~~-----~g~v~~~~i~~~~g   74 (345)
T PF10282_consen    3 YVGSYTNGKGGGI-YVFRFDEETGTLTLVQTVAEG--ENPSWLAVSPDGRRLYVVNEGSGD-----SGGVSSYRIDPDTG   74 (345)
T ss_dssp             EEEECCSSSSTEE-EEEEEETTTTEEEEEEEEEES--SSECCEEE-TTSSEEEEEETTSST-----TTEEEEEEEETTTT
T ss_pred             EEEcCCCCCCCcE-EEEEEcCCCCCceEeeeecCC--CCCceEEEEeCCCEEEEEEccccC-----CCCEEEEEECCCcc
Confidence            4565553 22211 366677799999887543221  11122333  56789988643211     2344444  55556


Q ss_pred             cEEeCCCCCCCCcccEEEEE---CCEEEEE
Q 016877          201 KWQDLPPLPVPRYAPATQLW---RGRLHVM  227 (381)
Q Consensus       201 ~W~~~~~~p~~r~~~~~~~~---~~~lyv~  227 (381)
                      +.+.+...+......+...+   +..||+.
T Consensus        75 ~L~~~~~~~~~g~~p~~i~~~~~g~~l~va  104 (345)
T PF10282_consen   75 TLTLLNSVPSGGSSPCHIAVDPDGRFLYVA  104 (345)
T ss_dssp             EEEEEEEEEESSSCEEEEEECTTSSEEEEE
T ss_pred             eeEEeeeeccCCCCcEEEEEecCCCEEEEE
Confidence            78877765533333333333   3445555

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=86.57  E-value=14  Score=34.05  Aligned_cols=66  Identities=15%  Similarity=0.097  Sum_probs=36.9

Q ss_pred             cCcceEeecCCCCCeEEccCCCCC-CCCc-----eEEE-ECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC
Q 016877           88 LPATFQDLPAPELKWEKMKAAPVP-RLDG-----AAIQ-IKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR  158 (381)
Q Consensus        88 ~~~~~~~~~~~~~~W~~l~~~p~~-r~~~-----~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  158 (381)
                      ....+..||..+.+-..--.+|.. |...     .... -++ .+||.=     -.+..+|-+.|++.++-...-+.|.
T Consensus        65 RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N-----~TPa~SVtVVDl~~~kvv~ei~~PG  138 (342)
T PF06433_consen   65 RTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN-----FTPATSVTVVDLAAKKVVGEIDTPG  138 (342)
T ss_dssp             EEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE-----ESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred             ceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc-----cCCCCeEEEEECCCCceeeeecCCC
Confidence            344677899988754332234432 5432     1222 244 666652     2345679999999998766444443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>cd00094 HX Hemopexin-like repeats

Probab=86.23  E-value=19  Score=30.32  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=15.3

Q ss_pred             EEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +....+++|+|-|          +.+|+++..
T Consensus        12 ~~~~~g~~y~FkG----------~~~w~~~~~   33 (194)
T cd00094          12 VTTLRGELYFFKG----------RYFWRLSPG   33 (194)
T ss_pred             EEEeCCEEEEEeC----------CEEEEEeCC
Confidence            3445699999965          457778765

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>smart00284 OLF Olfactomedin-like domains

Probab=85.97  E-value=24  Score=31.20  Aligned_cols=184  Identities=14%  Similarity=0.130  Sum_probs=91.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeC----CCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNF----TDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      ++++|++-+....   .+.++.|.-    ...++.+.-.+|.+  -.+.+.++.++.+|..-.        ....+.+||
T Consensus        34 ~~~~wv~~~~~~~---~~~v~ey~~~~~f~~~~~~~~~~Lp~~--~~GtG~VVYngslYY~~~--------~s~~iiKyd  100 (255)
T smart00284       34 KSLYWYMPLNTRV---LRSVREYSSMSDFQMGKNPTDHPLPHA--GQGTGVVVYNGSLYFNKF--------NSHDICRFD  100 (255)
T ss_pred             CceEEEEccccCC---CcEEEEecCHHHHhccCCceEEECCCc--cccccEEEECceEEEEec--------CCccEEEEE
Confidence            4678887664311   123444432    23333332234543  345677889999997521        257799999


Q ss_pred             CCCCcEEeCCCCCCCCcc------------cEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccC----CceEEec
Q 016877          197 TETKKWQDLPPLPVPRYA------------PATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE----KEWRTEI  260 (381)
Q Consensus       197 ~~~~~W~~~~~~p~~r~~------------~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~----~~W~~~~  260 (381)
                      +.+.+-.....+|.+.+.            .-.++-++-|+|+=.....       .=.+.+...||.+    .+|..  
T Consensus       101 L~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~-------~g~ivvSkLnp~tL~ve~tW~T--  171 (255)
T smart00284      101 LTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQN-------AGKIVISKLNPATLTIENTWIT--  171 (255)
T ss_pred             CCCCcEEEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCC-------CCCEEEEeeCcccceEEEEEEc--
Confidence            999886544444433211            1233344556666222110       0123333444543    45665  


Q ss_pred             CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEE
Q 016877          261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV  339 (381)
Q Consensus       261 ~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~  339 (381)
                      ..++...+ .+.++=|.||+.-.....              .    ..-.|.|| .+.+ ..-..+|.+.....++++-+
T Consensus       172 ~~~k~sa~-naFmvCGvLY~~~s~~~~--------------~----~~I~yayDt~t~~-~~~~~i~f~n~y~~~s~l~Y  231 (255)
T smart00284      172 TYNKRSAS-NAFMICGILYVTRSLGSK--------------G----EKVFYAYDTNTGK-EGHLDIPFENMYEYISMLDY  231 (255)
T ss_pred             CCCccccc-ccEEEeeEEEEEccCCCC--------------C----cEEEEEEECCCCc-cceeeeeeccccccceecee
Confidence            33333322 344555688888642211              0    11157888 4443 22233444444433445555


Q ss_pred             ---CCEEEEE
Q 016877          340 ---NNSIVIV  346 (381)
Q Consensus       340 ---~~~l~v~  346 (381)
                         +.+||+.
T Consensus       232 NP~d~~LY~w  241 (255)
T smart00284      232 NPNDRKLYAW  241 (255)
T ss_pred             CCCCCeEEEE
Confidence               4788886

>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.40  E-value=28  Score=31.39  Aligned_cols=160  Identities=17%  Similarity=0.107  Sum_probs=82.2

Q ss_pred             cCCCCCCCCccceEEEEEeCCEEEEEcCCC-------CCCC-------CCCcceEEEEECCCCc----EEeCCCCCCCCc
Q 016877          152 GRFDMPREMAHSHLGMVTDGRYIYVVTGQY-------GPQC-------RGPTAHTFVLDTETKK----WQDLPPLPVPRY  213 (381)
Q Consensus       152 ~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-------~~~~-------~~~~~~~~~yd~~~~~----W~~~~~~p~~r~  213 (381)
                      .+.+.|..-...+.++..+++.|| |||.-       +...       ..-.+.+..||.++++    |.+--.-+  +.
T Consensus        27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~~  103 (339)
T PF09910_consen   27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--TK  103 (339)
T ss_pred             eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--cc
Confidence            355555544456677888899888 78751       1100       0124678899999877    65533222  22


Q ss_pred             ccEEE------EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCC
Q 016877          214 APATQ------LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGD  287 (381)
Q Consensus       214 ~~~~~------~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~  287 (381)
                      ...-+      .++++|++.-+-..         -++-+++.|..+..=+.+..-|...   .....+...|-+  .+..
T Consensus       104 WaGEVSdIlYdP~~D~LLlAR~DGh---------~nLGvy~ldr~~g~~~~L~~~ps~K---G~~~~D~a~F~i--~~~~  169 (339)
T PF09910_consen  104 WAGEVSDILYDPYEDRLLLARADGH---------ANLGVYSLDRRTGKAEKLSSNPSLK---GTLVHDYACFGI--NNFH  169 (339)
T ss_pred             cccchhheeeCCCcCEEEEEecCCc---------ceeeeEEEcccCCceeeccCCCCcC---ceEeeeeEEEec--cccc
Confidence            22221      14788888753211         1233333356666666654444332   334444444433  1111


Q ss_pred             CCCCCCCCccccccCceeecCceeEeC-CCCCe--EEcCCC------CCCCCCcceEEEEECCEEEEE
Q 016877          288 FMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW--KVLPSM------PKPDSHIEFAWVLVNNSIVIV  346 (381)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W--~~i~~~------~~~~~~~~~~~~~~~~~l~v~  346 (381)
                      .                 -...+.++| .+.+|  +..+.-      +.-+...+ .++...++++.|
T Consensus       170 ~-----------------g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G-~~~s~ynR~faF  219 (339)
T PF09910_consen  170 K-----------------GVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELG-AMASAYNRLFAF  219 (339)
T ss_pred             c-----------------CCceEEEEEccCCeEEEEecccccCCCCCceEeeccc-cEEEEeeeEEEE
Confidence            1                 134588898 88999  433211      11111222 356677777665

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=84.16  E-value=29  Score=31.82  Aligned_cols=122  Identities=15%  Similarity=0.137  Sum_probs=76.1

Q ss_pred             cceEeecCCCC-----CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe-EecCCCCCCCCccc
Q 016877           90 ATFQDLPAPEL-----KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHS  163 (381)
Q Consensus        90 ~~~~~~~~~~~-----~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~r~  163 (381)
                      ..+..|+..+.     +.+.+.....+-.-.+++.+++++.+.-|        +.+.+|++..++ +...+.+..+.  .
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~~~~~~--~  131 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAFYDSPF--Y  131 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEEE-BSS--S
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhheecceE--E
Confidence            45677776663     55555544444445667778999776665        358888888888 88887776643  5


Q ss_pred             eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEc
Q 016877          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMG  228 (381)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~G  228 (381)
                      ..++.+.++.|++---..       .-.++.|+.+..+-..++.-..++...++..+ ++..++.+
T Consensus       132 i~sl~~~~~~I~vgD~~~-------sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~  190 (321)
T PF03178_consen  132 ITSLSVFKNYILVGDAMK-------SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG  190 (321)
T ss_dssp             EEEEEEETTEEEEEESSS-------SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred             EEEEeccccEEEEEEccc-------CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence            567777888766542211       23466788877777777765556766666666 65544443

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=83.86  E-value=34  Score=31.18  Aligned_cols=206  Identities=13%  Similarity=0.143  Sum_probs=88.9

Q ss_pred             eEeecCCCCCeEEcc-CCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           92 FQDLPAPELKWEKMK-AAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~-~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      +..-.-...+|++++ +.+.|...+.+..+ ++.++++|..       ..+++=.-.-.+|+.+..-..  .-.......
T Consensus        83 ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~~~~--gs~~~~~r~  153 (302)
T PF14870_consen   83 LLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-------GAIYRTTDGGKTWQAVVSETS--GSINDITRS  153 (302)
T ss_dssp             EEEESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---------EEEESSTTSSEEEEE-S------EEEEEE-
T ss_pred             EEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCCCCCCeeEcccCCc--ceeEeEEEC
Confidence            344444566999985 23444444555444 4577777642       224444445668998754332  111222333


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeeec
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKD  248 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~  248 (381)
                      -++.+++++. .+       +-....|+-...|+...... .|.-.++.. -++.|+++. ..+.       .+.   .+
T Consensus       154 ~dG~~vavs~-~G-------~~~~s~~~G~~~w~~~~r~~-~~riq~~gf~~~~~lw~~~-~Gg~-------~~~---s~  213 (302)
T PF14870_consen  154 SDGRYVAVSS-RG-------NFYSSWDPGQTTWQPHNRNS-SRRIQSMGFSPDGNLWMLA-RGGQ-------IQF---SD  213 (302)
T ss_dssp             TTS-EEEEET-TS-------SEEEEE-TT-SS-EEEE--S-SS-EEEEEE-TTS-EEEEE-TTTE-------EEE---EE
T ss_pred             CCCcEEEEEC-cc-------cEEEEecCCCccceEEccCc-cceehhceecCCCCEEEEe-CCcE-------EEE---cc
Confidence            5666555553 22       22346788888998876443 344444444 456777764 2111       000   00


Q ss_pred             CCccCCceEEe-cCCCCCCcc-eeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEe-CCCCCeEEcCC
Q 016877          249 GKPLEKEWRTE-IPIPRGGPH-RACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-DDEMKWKVLPS  324 (381)
Q Consensus       249 ~~~~~~~W~~~-~~~p~~~~~-~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d~~~~W~~i~~  324 (381)
                      ......+|++. .+.+..... ..++.. ++.+++.||...                       +++= |..++|++.+.
T Consensus       214 ~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~-----------------------l~~S~DgGktW~~~~~  270 (302)
T PF14870_consen  214 DPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGT-----------------------LLVSTDGGKTWQKDRV  270 (302)
T ss_dssp             -TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEESTT------------------------EEEESSTTSS-EE-GG
T ss_pred             CCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCCcc-----------------------EEEeCCCCccceECcc
Confidence            11234577763 233334432 333333 578999888641                       4443 37889998864


Q ss_pred             C-CCCCCCcceEEEEECCEEEEEcccc
Q 016877          325 M-PKPDSHIEFAWVLVNNSIVIVGGTT  350 (381)
Q Consensus       325 ~-~~~~~~~~~~~~~~~~~l~v~GG~~  350 (381)
                      . +.|-... .-....+++-+++|-..
T Consensus       271 ~~~~~~n~~-~i~f~~~~~gf~lG~~G  296 (302)
T PF14870_consen  271 GENVPSNLY-RIVFVNPDKGFVLGQDG  296 (302)
T ss_dssp             GTTSSS----EEEEEETTEEEEE-STT
T ss_pred             ccCCCCceE-EEEEcCCCceEEECCCc
Confidence            2 2222211 12244567999998643

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=83.79  E-value=18  Score=33.14  Aligned_cols=78  Identities=10%  Similarity=0.163  Sum_probs=53.1

Q ss_pred             cceEEEeCCCC-----eEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc-EEeCCCCCCC
Q 016877          138 SHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPLPVP  211 (381)
Q Consensus       138 ~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~  211 (381)
                      ..+..|+....     +.+.+.....+  ..-.+++.+++++.+.-|          +.+..|+...++ +...+.+..+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~--g~V~ai~~~~~~lv~~~g----------~~l~v~~l~~~~~l~~~~~~~~~  129 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVK--GPVTAICSFNGRLVVAVG----------NKLYVYDLDNSKTLLKKAFYDSP  129 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEES--S-EEEEEEETTEEEEEET----------TEEEEEEEETTSSEEEEEEE-BS
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeec--CcceEhhhhCCEEEEeec----------CEEEEEEccCcccchhhheecce
Confidence            56889998885     56655443332  234567778998666554          568888888877 8888766666


Q ss_pred             CcccEEEEECCEEEEE
Q 016877          212 RYAPATQLWRGRLHVM  227 (381)
Q Consensus       212 r~~~~~~~~~~~lyv~  227 (381)
                      -...++.+.++.|++-
T Consensus       130 ~~i~sl~~~~~~I~vg  145 (321)
T PF03178_consen  130 FYITSLSVFKNYILVG  145 (321)
T ss_dssp             SSEEEEEEETTEEEEE
T ss_pred             EEEEEEeccccEEEEE
Confidence            6777777888877655

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>cd00094 HX Hemopexin-like repeats

Probab=82.84  E-value=27  Score=29.35  Aligned_cols=94  Identities=16%  Similarity=0.179  Sum_probs=46.5

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCC----CCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCC
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRF----DMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGP  188 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~----~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~  188 (381)
                      +++...+++|+|-|.        .+|+++.....  -..+.    .+|.   .-..+..... +++|+|-|         
T Consensus        11 A~~~~~g~~y~FkG~--------~~w~~~~~~~~~~p~~I~~~w~~~p~---~IDAa~~~~~~~~~yfFkg---------   70 (194)
T cd00094          11 AVTTLRGELYFFKGR--------YFWRLSPGKPPGSPFLISSFWPSLPS---PVDAAFERPDTGKIYFFKG---------   70 (194)
T ss_pred             eEEEeCCEEEEEeCC--------EEEEEeCCCCCCCCeEhhhhCCCCCC---CccEEEEECCCCEEEEECC---------
Confidence            344456899999763        36666654111  11111    1222   1222333333 89999965         


Q ss_pred             cceEEEEECCCCcEE---eCC--CCCC-CCcccEEEEE--CCEEEEEccC
Q 016877          189 TAHTFVLDTETKKWQ---DLP--PLPV-PRYAPATQLW--RGRLHVMGGS  230 (381)
Q Consensus       189 ~~~~~~yd~~~~~W~---~~~--~~p~-~r~~~~~~~~--~~~lyv~GG~  230 (381)
                       +..|+||..+..+.   .+.  ..|. +..--++...  ++++|+|-|.
T Consensus        71 -~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~  119 (194)
T cd00094          71 -DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD  119 (194)
T ss_pred             -CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC
Confidence             56888887642221   111  1111 1112233333  5799999874

; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=82.66  E-value=16  Score=28.31  Aligned_cols=84  Identities=13%  Similarity=0.096  Sum_probs=53.5

Q ss_pred             EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC-CCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE-E
Q 016877          119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL-D  196 (381)
Q Consensus       119 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y-d  196 (381)
                      -++|-+|-..-.  .......+.+||.++.+|+.+... ..........++.++|++-++.-.....  ...-++|.. |
T Consensus         3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~--~~~~~iWvLeD   78 (129)
T PF08268_consen    3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE--PDSIDIWVLED   78 (129)
T ss_pred             EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC--cceEEEEEeec
Confidence            357777766654  122235689999999999987532 1122355677888999988875433221  113567777 5


Q ss_pred             CCCCcEEeCC
Q 016877          197 TETKKWQDLP  206 (381)
Q Consensus       197 ~~~~~W~~~~  206 (381)
                      .++..|++..
T Consensus        79 ~~k~~Wsk~~   88 (129)
T PF08268_consen   79 YEKQEWSKKH   88 (129)
T ss_pred             cccceEEEEE
Confidence            6678898764

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=82.64  E-value=39  Score=30.95  Aligned_cols=95  Identities=8%  Similarity=0.047  Sum_probs=42.9

Q ss_pred             cceEeecCC-CCCeEEccCCCCCCCCceEE-EECC-EEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccce
Q 016877           90 ATFQDLPAP-ELKWEKMKAAPVPRLDGAAI-QIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSH  164 (381)
Q Consensus        90 ~~~~~~~~~-~~~W~~l~~~p~~r~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~  164 (381)
                      ..+..|+.. ..+++.+...+.+..-..++ .-++ .+|+.. ..     .+.+.+||+.++.  .+.+..++..  ...
T Consensus        57 ~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~-~~-----~~~v~v~~~~~~g~~~~~~~~~~~~--~~~  128 (330)
T PRK11028         57 FRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSAS-YN-----ANCVSVSPLDKDGIPVAPIQIIEGL--EGC  128 (330)
T ss_pred             CcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEE-cC-----CCeEEEEEECCCCCCCCceeeccCC--Ccc
Confidence            345555554 34565544333322212222 2234 566654 22     2346777775431  1122222221  122


Q ss_pred             EEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          165 LGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       165 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      |.++..  ++.+|+..-        ..+.+..||..+.
T Consensus       129 ~~~~~~p~g~~l~v~~~--------~~~~v~v~d~~~~  158 (330)
T PRK11028        129 HSANIDPDNRTLWVPCL--------KEDRIRLFTLSDD  158 (330)
T ss_pred             cEeEeCCCCCEEEEeeC--------CCCEEEEEEECCC
Confidence            334333  346766531        1366889998763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=82.40  E-value=48  Score=31.79  Aligned_cols=104  Identities=9%  Similarity=0.070  Sum_probs=57.9

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~  168 (381)
                      ..++.+|..+.+-+++...+..-. .....-++ +|++..-.++    ..+++++|..+.+.+++...+..  .......
T Consensus       223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~~~~--~~~~~~s  295 (430)
T PRK00178        223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNHPAI--DTEPFWG  295 (430)
T ss_pred             CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccCCCC--cCCeEEC
Confidence            367888888777666654432111 11222244 5554432221    14699999999988877543321  1122222


Q ss_pred             EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877          169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (381)
Q Consensus       169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (381)
                      -.+++|+......+      ..+++.+|..+.+++.+.
T Consensus       296 pDg~~i~f~s~~~g------~~~iy~~d~~~g~~~~lt  327 (430)
T PRK00178        296 KDGRTLYFTSDRGG------KPQIYKVNVNGGRAERVT  327 (430)
T ss_pred             CCCCEEEEEECCCC------CceEEEEECCCCCEEEee
Confidence            23456665532222      357999999988887764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=82.06  E-value=47  Score=31.50  Aligned_cols=62  Identities=15%  Similarity=0.252  Sum_probs=37.1

Q ss_pred             cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (381)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (381)
                      ..++++|+.+++-..+...+..  .......-.+..|++....++      ..+++.+|+.+...+.+..
T Consensus       214 ~~i~v~d~~~g~~~~~~~~~~~--~~~~~~spDg~~l~~~~~~~~------~~~i~~~d~~~~~~~~l~~  275 (417)
T TIGR02800       214 PEIYVQDLATGQREKVASFPGM--NGAPAFSPDGSKLAVSLSKDG------NPDIYVMDLDGKQLTRLTN  275 (417)
T ss_pred             cEEEEEECCCCCEEEeecCCCC--ccceEECCCCCEEEEEECCCC------CccEEEEECCCCCEEECCC
Confidence            4589999998876666544331  122222223345665543222      3569999999888777754

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=81.88  E-value=43  Score=30.93  Aligned_cols=60  Identities=12%  Similarity=0.084  Sum_probs=34.5

Q ss_pred             EEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC
Q 016877          165 LGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE  232 (381)
Q Consensus       165 ~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  232 (381)
                      ++++.. ++.+.+.||-+.        ..+.++..+..|--.-+-..--.......+++.+++-|+..+
T Consensus        68 Favsl~P~~~l~aTGGgDD--------~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG  128 (399)
T KOG0296|consen   68 FAVSLHPNNNLVATGGGDD--------LAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG  128 (399)
T ss_pred             EEEEeCCCCceEEecCCCc--------eEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc
Confidence            444444 567788887543        367788877764322111111122233457888888888766

>PRK05137 tolB translocation protein TolB; Provisional

Probab=81.50  E-value=52  Score=31.65  Aligned_cols=63  Identities=14%  Similarity=0.152  Sum_probs=39.2

Q ss_pred             cceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL  208 (381)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  208 (381)
                      ..++++|+.+++.+.+...+..  .......-.+.+|++....++      ..++|.+|.++..-+.+...
T Consensus       226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g------~~~Iy~~d~~~~~~~~Lt~~  288 (435)
T PRK05137        226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG------NTDIYTMDLRSGTTTRLTDS  288 (435)
T ss_pred             CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC------CceEEEEECCCCceEEccCC
Confidence            4699999999988877655542  112222223445554433222      36799999998887776543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=81.46  E-value=50  Score=31.44  Aligned_cols=98  Identities=10%  Similarity=0.038  Sum_probs=48.4

Q ss_pred             eEeecCCCCCeEEccC-C-C-CCC-C-CceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           92 FQDLPAPELKWEKMKA-A-P-VPR-L-DGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~-~-p-~~r-~-~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      +..-+-.-++|++... . . ..+ . ...+...++..|++|-.   .    .+..=+-.-.+|++++..+.........
T Consensus       112 IL~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~---G----~il~T~DgG~tW~~~~~~~~~p~~~~~i  184 (398)
T PLN00033        112 LLETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP---A----ILLHTSDGGETWERIPLSPKLPGEPVLI  184 (398)
T ss_pred             EEEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc---e----EEEEEcCCCCCceECccccCCCCCceEE
Confidence            3333344568988531 1 1 111 1 23344457788887632   1    1222222346899876432110122222


Q ss_pred             EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeC
Q 016877          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL  205 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~  205 (381)
                      .+.-++.++++|.         ...+++=+-.-.+|+.+
T Consensus       185 ~~~~~~~~~ivg~---------~G~v~~S~D~G~tW~~~  214 (398)
T PLN00033        185 KATGPKSAEMVTD---------EGAIYVTSNAGRNWKAA  214 (398)
T ss_pred             EEECCCceEEEec---------cceEEEECCCCCCceEc
Confidence            3334456788763         12355555556789887

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=81.21  E-value=58  Score=31.98  Aligned_cols=27  Identities=7%  Similarity=-0.100  Sum_probs=18.8

Q ss_pred             hheeEc-CEEEEecCCCCCcccceeeeeeCCCce
Q 016877           28 GFALVA-DFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        28 ~~~~~~-~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++++.+ +.+|+... +     ..+.++|.++++
T Consensus       104 g~~~~~~~~V~v~~~-~-----g~v~AlD~~TG~  131 (488)
T cd00216         104 GVAYWDPRKVFFGTF-D-----GRLVALDAETGK  131 (488)
T ss_pred             CcEEccCCeEEEecC-C-----CeEEEEECCCCC
Confidence            345566 88887542 2     377899999888

The alignment model contains an 8-bladed beta-propeller.

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=80.98  E-value=39  Score=29.86  Aligned_cols=178  Identities=14%  Similarity=0.071  Sum_probs=94.1

Q ss_pred             EcCEEEEecCCCCCcccceeeeee----C-CCce----eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCC
Q 016877           32 VADFFWASSSKFTSSYLNIASNWS----P-YHNS----IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELK  101 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d----~-~~~~----~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  101 (381)
                      -.+++|++.+..+.    .+..|.    . ..++    ..||  .+-.+-|.++..+ .+-...  -+..+.+||..+++
T Consensus        29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp--~~~~GtG~vVYngslYY~~~--~s~~IvkydL~t~~  100 (250)
T PF02191_consen   29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLP--YPWQGTGHVVYNGSLYYNKY--NSRNIVKYDLTTRS  100 (250)
T ss_pred             CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEe--ceeccCCeEEECCcEEEEec--CCceEEEEECcCCc
Confidence            46789999986654    333331    1 1111    3444  3334455555544 333333  44578999999886


Q ss_pred             eEEccCCCCCCCC------------ceEEEECCEEEEEecCCCCCCcccceEEEeCCC----CeEecCCCCCCCCccceE
Q 016877          102 WEKMKAAPVPRLD------------GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD----NTWGGRFDMPREMAHSHL  165 (381)
Q Consensus       102 W~~l~~~p~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~----~~W~~~~~~~~~~~r~~~  165 (381)
                      -..-..+|.+...            .-.++-++-|+|+-.....+... .+-..|+.+    .+|..  ..+.  +....
T Consensus       101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~i-vvskld~~tL~v~~tw~T--~~~k--~~~~n  175 (250)
T PF02191_consen  101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNI-VVSKLDPETLSVEQTWNT--SYPK--RSAGN  175 (250)
T ss_pred             EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcE-EEEeeCcccCceEEEEEe--ccCc--hhhcc
Confidence            4422223322221            22333455677776554333211 255667664    46775  2333  22333


Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEE---CCEEEEE
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLW---RGRLHVM  227 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~lyv~  227 (381)
                       +-++-|.+|++-..+...    ..-.+.||+.+++=..+. +++.+-..+++..+   +.+||+.
T Consensus       176 -aFmvCGvLY~~~s~~~~~----~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~w  236 (250)
T PF02191_consen  176 -AFMVCGVLYATDSYDTRD----TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAW  236 (250)
T ss_pred             -eeeEeeEEEEEEECCCCC----cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEE
Confidence             334456799986554322    344678999988755433 23333344455544   5779988

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PLN00181 protein SPA1-RELATED; Provisional

Probab=80.72  E-value=79  Score=33.22  Aligned_cols=62  Identities=5%  Similarity=0.064  Sum_probs=32.8

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +..++.|+.+      ..+.++|..+++-..  .+... ...-.+++..  ++.+++.|+.++        .+..||..+
T Consensus       545 ~~~las~~~D------g~v~lWd~~~~~~~~--~~~~H-~~~V~~l~~~p~~~~~L~Sgs~Dg--------~v~iWd~~~  607 (793)
T PLN00181        545 KSQVASSNFE------GVVQVWDVARSQLVT--EMKEH-EKRVWSIDYSSADPTLLASGSDDG--------SVKLWSINQ  607 (793)
T ss_pred             CCEEEEEeCC------CeEEEEECCCCeEEE--EecCC-CCCEEEEEEcCCCCCEEEEEcCCC--------EEEEEECCC
Confidence            3455666654      247778887654332  12110 1112334443  456777777544        367788765


Q ss_pred             C
Q 016877          200 K  200 (381)
Q Consensus       200 ~  200 (381)
                      .
T Consensus       608 ~  608 (793)
T PLN00181        608 G  608 (793)
T ss_pred             C
Confidence            4

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	381
3ii7_A	306	Crystal Structure Of The Kelch Domain Of Human Klhl		1e-06
3vng_A	309	Crystal Structure Of Keap1 In Complex With Syntheti		5e-05
1u6d_X	308	Crystal Structure Of The Kelch Domain Of Human Keap		5e-04
2xn4_A	302	Crystal Structure Of The Kelch Domain Of Human Klhl		5e-04

>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7 Length = 306

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 64/294 (21%), Positives = 108/294 (36%), Gaps = 40/294 (13%)
Query: 89  PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN 148
           P + +     +  W  ++     R D A +   N++Y+  G  S  +    +D YN   +
Sbjct: 23  PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG--SQLFPIKRMDCYNVVKD 80
Query: 149 TWGGRFD--MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF-VLDTETKKWQDL 205
           +W  +     PR+   S      +G+ IY   G    +      + F   DT T+ W   
Sbjct: 81  SWYSKLGPPTPRD---SLAACAAEGK-IYTSGGS---EVGNSALYLFECYDTRTESWHTK 133
Query: 206 PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
           P +   R +       G ++V GGS  N  +  V + S  V D  P  + W    P+   
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLN-SCEVYD--PATETWTELCPMIEA 190
Query: 266 GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSM 325
             +   V V D++  +GGQ G                + V Y D+ +     +WK++  M
Sbjct: 191 RKNHGLVFVKDKIFAVGGQNG------------LGGLDNVEYYDIKL----NEWKMVSPM 234
Query: 326 PKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA 379
           P         W  V      VG         + +  +G I ++N  T   V N+
Sbjct: 235 P---------WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVANS 279

>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small Molecular Based On A Co-crystallization Length = 309

Iteration: 1
 Score = 45.4 bits (106), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 12/143 (8%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
           VPR    A ++  L+Y   GY       S+++ YN +D TW    D+  ++  S L    
Sbjct: 14  VPRGSHMAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 69
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
            G  +Y V G+   P     ++     +  T +W    P+ VPR      +  G ++ +G
Sbjct: 70  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 129
Query: 229 GS-------GENRYTPEVDHWSL 244
           GS          RY PE D W L
Sbjct: 130 GSHGCIHHNSVERYEPERDEWHL 152

>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1 Length = 308

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/143 (27%), Positives = 60/143 (41%), Gaps = 13/143 (9%)
Query: 110 VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT 169
           VPR    A ++  L+Y   GY       S+++ YN +D TW    D+  ++  S L    
Sbjct: 14  VPR-GSHAPKVGRLIYTAGGY--FRQSLSYLEAYNPSDGTWLRLADL--QVPRSGLAGCV 68
Query: 170 DGRYIYVVTGQY-GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMG 228
            G  +Y V G+   P     ++     +  T +W    P+ VPR      +  G ++ +G
Sbjct: 69  VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVG 128
Query: 229 GS-------GENRYTPEVDHWSL 244
           GS          RY PE D W L
Sbjct: 129 GSHGCIHHNSVERYEPERDEWHL 151

>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2 (mayven) Length = 302

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/130 (26%), Positives = 53/130 (40%), Gaps = 13/130 (10%)
Query: 123 LLYVFAGYG-SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY 181
           LLY   GY  +     S V+ YN T N W    +M    + + +G++ +   +Y V G  
Sbjct: 157 LLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNN--LLYAVGGHD 214
Query: 182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG-------SGENR 234
           GP  R       V D  T  W+ +  + + R         G L+V+GG       +    
Sbjct: 215 GPLVRKSVE---VYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEY 271
Query: 235 YTPEVDHWSL 244
           Y P  D W++
Sbjct: 272 YNPTTDKWTV 281

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	381
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	5e-34
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	8e-19
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	4e-13
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	1e-05
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-29
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	1e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	3e-22
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	4e-21
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	9e-29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	8e-22
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	5e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	8e-28
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	1e-21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	5e-21
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-20
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	3e-15
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	9e-28
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	8e-27
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	3e-22
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	1e-07
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	9e-28
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-23
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	5e-19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	4e-26
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	3e-24
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	2e-19
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	1e-05
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	8e-18
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	1e-16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	9e-16
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	2e-07
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	1e-08
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score =  128 bits (323), Expect = 5e-34
 Identities = 52/271 (19%), Positives = 83/271 (30%), Gaps = 48/271 (17%)

Query: 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168
           PVP   G      + +Y+  G         +       D  W      P           
Sbjct: 7   PVPFKSGTGAIDNDTVYIGLGSAG---TAWYKLDTQAKDKKWTALAAFPGGPRDQATSAF 63

Query: 169 TDGRYIYVVTGQYGPQCRGPTAHT--FVLDTETKKWQDL-PPLPVPRYAPATQLWRGRLH 225
            DG  +YV  G                  + +T  W  L    P+      T +  G+ +
Sbjct: 64  IDGN-LYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAY 122

Query: 226 VMGGSGENRYTPEVDHWSLAVKDGKPLEK---------------------------EWRT 258
           V GG  +N +    +  + A KD   ++K                           +W  
Sbjct: 123 VTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSY 182

Query: 259 EIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM 317
               P  G   A VV   D+  +I G+     AKPG       R + V   ++    + +
Sbjct: 183 AGESPWYGTAGAAVVNKGDKTWLINGE-----AKPG------LRTDAV--FELDFTGNNL 229

Query: 318 KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           KW  L  +  PD        + N+S++  GG
Sbjct: 230 KWNKLAPVSSPDGVAGGFAGISNDSLIFAGG 260

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 85.8 bits (212), Expect = 8e-19
 Identities = 34/281 (12%), Positives = 67/281 (23%), Gaps = 71/281 (25%)

Query: 101 KWEKMKA-APVPRLDGAAIQIKNLLYVFAGYGSIDYVHS--------------------- 138
            W K+ + AP+              YV  G     +                        
Sbjct: 97  SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHY 156

Query: 139 ------------HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCR 186
                        +  ++ +   W    + P     +   +V  G   +++ G+  P  R
Sbjct: 157 FDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWY-GTAGAAVVNKGDKTWLINGEAKPGLR 215

Query: 187 GPTAHTFVLDTETKKWQDLPPLPVP--RYAPATQLWRGRLHVMGGSGEN----------- 233
                         KW  L P+  P         +    L   GG+G             
Sbjct: 216 TDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKN 275

Query: 234 -RYTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMA 290
             +      +S  +        +W    E+   R       +  ++ LL+IGG       
Sbjct: 276 YAHEGLKKSYSTDIHL--WHNGKWDKSGELSQGRAYG--VSLPWNNSLLIIGG------- 324

Query: 291 KPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSH 331
                             D  ++  +     + ++     H
Sbjct: 325 ---------ETAGGKAVTDSVLITVKDNKVTVQNLEHHHHH 356

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 68.8 bits (168), Expect = 4e-13
 Identities = 31/147 (21%), Positives = 48/147 (32%), Gaps = 26/147 (17%)

Query: 205 LPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR 264
           LP  PVP  +    +    +++  GS           + L   D +  +K+W      P 
Sbjct: 3   LPETPVPFKSGTGAIDNDTVYIGLGSAGT------AWYKL---DTQAKDKKWTALAAFP- 52

Query: 265 GGP--HRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV 321
           GGP        +D  L V GG   +            S     V++DV+  +     W  
Sbjct: 53  GGPRDQATSAFIDGNLYVFGGIGKN------------SEGLTQVFNDVHKYNPKTNSWVK 100

Query: 322 LPSMPKPDSHIEFAWVLVNNSIVIVGG 348
           L S   P         + N    + GG
Sbjct: 101 LMSHA-PMGMAGHVTFVHNGKAYVTGG 126

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} Length = 357

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 27/117 (23%)

Query: 259 EIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD---D 315
           E P+P         + +D + +  G  G                        Y LD    
Sbjct: 5   ETPVPFK--SGTGAIDNDTVYIGLGSAGT---------------------AWYKLDTQAK 41

Query: 316 EMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372
           + KW  L + P      +     ++ ++ + GG  +      ++      +    N+
Sbjct: 42  DKKWTALAAFPGGPRD-QATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNS 97

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score =  113 bits (286), Expect = 4e-29
 Identities = 48/259 (18%), Positives = 80/259 (30%), Gaps = 49/259 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH---VDIYNFTDNTWGGRFDMP 157
            W ++    VPR   A   +  LLY   G  +    ++    +D YN   N W     M 
Sbjct: 50  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 109

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
                + +G+     +IY V G +G             + E  +W  + P+   R     
Sbjct: 110 V--PRNRIGVGVIDGHIYAVGGSHG---CIHHNSVERYEPERDEWHLVAPMLTRRIGVGV 164

Query: 218 QLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA 270
            +    L+ +GG            Y PE + W +             T +   R G    
Sbjct: 165 AVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM------------ITAMNTIRSGA--G 210

Query: 271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPD 329
             V+ + +   GG +G              + N V  YD      +   W  +  M    
Sbjct: 211 VCVLHNCIYAAGGYDG------------QDQLNSVERYD-----VETETWTFVAPMKHR- 252

Query: 330 SHIEFAWVLVNNSIVIVGG 348
                   +    I ++GG
Sbjct: 253 -RSALGITVHQGRIYVLGG 270

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 95.9 bits (239), Expect = 1e-22
 Identities = 56/259 (21%), Positives = 92/259 (35%), Gaps = 53/259 (20%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMA 161
                +  VPR   A   +  L+Y   GY       S+++ YN ++ TW    D+   + 
Sbjct: 6   HHHHSSGLVPRGSHAPK-VGRLIYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQ--VP 60

Query: 162 HSHLGMVTDGRYIYVVTGQ-YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
            S L     G  +Y V G+   P     ++     +  T +W    P+ VPR      + 
Sbjct: 61  RSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI 120

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
            G ++ +GGS          RY PE D W L      P+           R G      V
Sbjct: 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLV----APM--------LTRRIGV--GVAV 166

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYD---DVYMLDDEMKWKVLPSMPKPD 329
           ++  L  +GG +G             +R N    Y    +        +W+++ +M    
Sbjct: 167 LNRLLYAVGGFDGT------------NRLNSAECYYPERN--------EWRMITAMNTIR 206

Query: 330 SHIEFAWVLVNNSIVIVGG 348
           S       +++N I   GG
Sbjct: 207 SG--AGVCVLHNCIYAAGG 223

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 95.1 bits (237), Expect = 3e-22
 Identities = 39/236 (16%), Positives = 63/236 (26%), Gaps = 45/236 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W       VPR       I   +Y   G     + +S V+ Y    + W     M    
Sbjct: 101 QWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNS-VERYEPERDEWHLVAPMLT-- 157

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
               +G+    R +Y V G  G               E  +W+ +  +   R      + 
Sbjct: 158 RRIGVGVAVLNRLLYAVGGFDGTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVL 214

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
              ++  GG           RY  E + W+                +   R        V
Sbjct: 215 HNCIYAAGGYDGQDQLNSVERYDVETETWTFV------------APMKHRRSAL--GITV 260

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKP 328
              R+ V+GG +G                     D V   D +   W  +  M   
Sbjct: 261 HQGRIYVLGGYDG-----------------HTFLDSVECYDPDTDTWSEVTRMTSG 299

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A Length = 308

 Score = 91.6 bits (228), Expect = 4e-21
 Identities = 38/179 (21%), Positives = 59/179 (32%), Gaps = 26/179 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R+      +  LLY   G+   + ++S  + Y    N W     M    
Sbjct: 148 EWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-AECYYPERNEWRMITAMNT-- 204

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+      IY   G  G             D ET+ W  + P+   R A    + 
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQDQ---LNSVERYDVETETWTFVAPMKHRRSALGITVH 261

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 272
           +GR++V+GG   +        Y P+ D WS              T +   R G     V
Sbjct: 262 QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV------------TRMTSGRSG-VGVAV 307

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score =  112 bits (283), Expect = 9e-29
 Identities = 47/258 (18%), Positives = 83/258 (32%), Gaps = 49/258 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W ++   P  R     + +  L++   G+     V + VD Y+   + W    +M    
Sbjct: 41  RWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRT-VDSYDPVKDQWTSVANMRD-- 97

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S LG       +Y V G  G       +     + ++ +W  + P+   R +    + 
Sbjct: 98  RRSTLGAAVLNGLLYAVGGFDG---STGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV 154

Query: 221 RGRLHVMGGSGEN---------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
            G L+ +GG              Y    + W+               E+   R G     
Sbjct: 155 GGLLYAVGGYDVASRQCLSTVECYNATTNEWTY------------IAEMSTRRSGA--GV 200

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDS 330
            V+++ L  +GG +G               R  V VYD          W+ +  M     
Sbjct: 201 GVLNNLLYAVGGHDGP------------LVRKSVEVYD-----PTTNAWRQVADMNMC-- 241

Query: 331 HIEFAWVLVNNSIVIVGG 348
                   VN  + +VGG
Sbjct: 242 RRNAGVCAVNGLLYVVGG 259

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 93.5 bits (233), Expect = 8e-22
 Identities = 40/237 (16%), Positives = 70/237 (29%), Gaps = 36/237 (15%)

Query: 115 GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYI 174
              + +  L+ V  G      + S V+ Y+F +  W    ++P        GMV     +
Sbjct: 9   RTPMNLPKLMVVVGGQAP-KAIRS-VECYDFKEERWHQVAELP--SRRCRAGMVYMAGLV 64

Query: 175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR 234
           + V G  G             D    +W  +  +   R      +  G L+ +GG   + 
Sbjct: 65  FAVGGFNG---SLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST 121

Query: 235 YTPEVDHWSLAVKDGKPLEKEWR--TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP 292
               V+ ++           EW     +   R        VV   L  +GG         
Sbjct: 122 GLSSVEAYN-------IKSNEWFHVAPMNTRRSSV--GVGVVGGLLYAVGG--------- 163

Query: 293 GSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
                     +      V   +    +W  +  M    S       ++NN +  VGG
Sbjct: 164 ------YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSG--AGVGVLNNLLYAVGG 212

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} Length = 302

 Score = 88.5 bits (220), Expect = 5e-20
 Identities = 44/251 (17%), Positives = 73/251 (29%), Gaps = 44/251 (17%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R    A  +  LLY   G+       S V+ YN   N W     M    
Sbjct: 88  QWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTG-LSSVEAYNIKSNEWFHVAPMNT-- 144

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S +G+   G  +Y V G Y    R   +     +  T +W  +  +   R      + 
Sbjct: 145 RRSSVGVGVVGGLLYAV-GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
              L+ +GG            Y P  + W                ++ + R         
Sbjct: 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQV------------ADMNMCRRNA--GVCA 249

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHI 332
           V+  L V+GG +G                  V  Y+         KW V+ S        
Sbjct: 250 VNGLLYVVGGDDGS------------CNLASVEYYN-----PTTDKWTVVSSCM-STGRS 291

Query: 333 EFAWVLVNNSI 343
                +++  +
Sbjct: 292 YAGVTVIDKRL 302

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score =  110 bits (276), Expect = 8e-28
 Identities = 46/259 (17%), Positives = 79/259 (30%), Gaps = 50/259 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT---DNTWGGRFDMP 157
           +W  + +    R   A++ + + +YV  GY     + S V+  ++T   D  W     M 
Sbjct: 42  EWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSS-VECLDYTADEDGVWYSVAPMN 100

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
                   G  T G  IYV  G  G             D    +W  L  +   R     
Sbjct: 101 V--RRGLAGATTLGDMIYVSGGFDG---SRRHTSMERYDPNIDQWSMLGDMQTAREGAGL 155

Query: 218 QLWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA 270
            +  G ++ +GG           +Y P   HW+              T +   R G    
Sbjct: 156 VVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTN------------VTPMATKRSGA--G 201

Query: 271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD 329
             +++D + V+GG +G                       V   +     W  + SM  P 
Sbjct: 202 VALLNDHIYVVGGFDGT-----------------AHLSSVEAYNIRTDSWTTVTSMTTP- 243

Query: 330 SHIEFAWVLVNNSIVIVGG 348
                   ++   +  + G
Sbjct: 244 -RCYVGATVLRGRLYAIAG 261

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 93.1 bits (232), Expect = 1e-21
 Identities = 44/238 (18%), Positives = 73/238 (30%), Gaps = 45/238 (18%)

Query: 99  ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR 158
           +  W  +    V R    A  + +++YV  G+       S ++ Y+   + W    DM  
Sbjct: 90  DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTS-MERYDPNIDQWSMLGDMQT 148

Query: 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218
             A    G+V     IY + G  G      +   +  D  T  W ++ P+   R      
Sbjct: 149 --AREGAGLVVASGVIYCLGGYDGLNIL-NSVEKY--DPHTGHWTNVTPMATKRSGAGVA 203

Query: 219 LWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
           L    ++V+GG            Y    D W+              T +  PR       
Sbjct: 204 LLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTV------------TSMTTPRCYV--GA 249

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKP 328
            V+  RL  I G                      +   +   D  +  W+V+ SM   
Sbjct: 250 TVLRGRLYAIAG-----------------YDGNSLLSSIECYDPIIDSWEVVTSMGTQ 290

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 91.2 bits (227), Expect = 5e-21
 Identities = 53/251 (21%), Positives = 81/251 (32%), Gaps = 50/251 (19%)

Query: 109 PVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV 168
             PR   A +    +L V  G+GS       V+ Y+     W     +       ++  V
Sbjct: 3   QGPRT-RARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSIT--RKRRYVASV 59

Query: 169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK---WQDLPPLPVPRYAPATQLWRGRLH 225
           +    IYV+ G  G   R   +    LD    +   W  + P+ V R           ++
Sbjct: 60  SLHDRIYVIGGYDG---RSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTLGDMIY 116

Query: 226 VMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 278
           V GG   +       RY P +D WS+       +           R G     VV    +
Sbjct: 117 VSGGFDGSRRHTSMERYDPNIDQWSML----GDM--------QTAREGA--GLVVASGVI 162

Query: 279 LVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWV 337
             +GG +G             +  N V  YD          W  +  M    S       
Sbjct: 163 YCLGGYDGL------------NILNSVEKYD-----PHTGHWTNVTPMATKRSG--AGVA 203

Query: 338 LVNNSIVIVGG 348
           L+N+ I +VGG
Sbjct: 204 LLNDHIYVVGG 214

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 88.9 bits (221), Expect = 3e-20
 Identities = 35/183 (19%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           +W  +      R     +    ++Y   GY  ++ ++S V+ Y+     W     M    
Sbjct: 139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS-VEKYDPHTGHWTNVTPMA--T 195

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+     +IYVV G  G       +     +  T  W  +  +  PR      + 
Sbjct: 196 KRSGAGVALLNDHIYVVGGFDGTAH---LSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL 252

Query: 221 RGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV 273
           RGRL+ + G   N        Y P +D W +             T +   R        V
Sbjct: 253 RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV------------TSMGTQRCDA--GVCV 298

Query: 274 VDD 276
           + +
Sbjct: 299 LRE 301

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} Length = 301

 Score = 74.6 bits (184), Expect = 3e-15
 Identities = 36/195 (18%), Positives = 65/195 (33%), Gaps = 31/195 (15%)

Query: 163 SHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRG 222
           +   +  +   + VV G    Q   P       D +T++W  LP +   R   A+     
Sbjct: 7   TRARLGANEV-LLVVGGFGSQQS--PIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHD 63

Query: 223 RLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRT--EIPIPRGGPHRACVVVDDRLLV 280
           R++V+GG         V+       +    +  W +   + + RG        + D + V
Sbjct: 64  RIYVIGGYDGRSRLSSVECLDYTADE----DGVWYSVAPMNVRRGLA--GATTLGDMIYV 117

Query: 281 IGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLV 339
            GG +G              R   +  YD    +D   +W +L  M           V+ 
Sbjct: 118 SGGFDGS------------RRHTSMERYD--PNID---QWSMLGDMQTAREG--AGLVVA 158

Query: 340 NNSIVIVGGTTEKHP 354
           +  I  +GG    + 
Sbjct: 159 SGVIYCLGGYDGLNI 173

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  110 bits (277), Expect = 9e-28
 Identities = 43/259 (16%), Positives = 80/259 (30%), Gaps = 40/259 (15%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID--YVHSHVDIYNFTDNTWGGRFDMPR 158
           +W  M   P PR      +  N +YV  G    D       V  Y+     WG    +P 
Sbjct: 78  EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137

Query: 159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ 218
                   +++    +YV+ G+     R       V D +  +W++L P+   R      
Sbjct: 138 --VVYGHTVLSHMDLVYVIGGKGSD--RKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT 193

Query: 219 LWRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRAC 271
           +  GR+ V  G  +         Y+   + W+                 P  R     + 
Sbjct: 194 VHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPF------------EAFPQERSSL--SL 239

Query: 272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDS 330
           V +   L  IGG              +         +D++  ++E  KW+ +       +
Sbjct: 240 VSLVGTLYAIGGFATLET--------ESGELVPTELNDIWRYNEEEKKWEGVLREIAYAA 291

Query: 331 HIEFAWVLVNNSIVIVGGT 349
                   +   + ++  T
Sbjct: 292 ----GATFLPVRLNVLRLT 306

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score =  107 bits (269), Expect = 8e-27
 Identities = 48/287 (16%), Positives = 90/287 (31%), Gaps = 51/287 (17%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNTWGGRFDM 156
           +    ++ VP+   + +  +N ++V  G         D + ++   ++  D+ W G   +
Sbjct: 26  YCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL 85

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P        G+      IYVV G+               D  + KW +  PLP   Y   
Sbjct: 86  PS--PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHT 143

Query: 217 TQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
                  ++V+GG G +         Y P+   W                 +   R    
Sbjct: 144 VLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKE------------LAPMQTARSLF- 190

Query: 269 RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPK 327
               V D R++V  G                   +   VY        + KW    + P+
Sbjct: 191 -GATVHDGRIIVAAGVTDT------------GLTSSAEVYS-----ITDNKWAPFEAFPQ 232

Query: 328 PDSHIEFAWVLVNNSIVIVGG--TTEKHPTTKKMVLVGEIFQFNLNT 372
                  + V +  ++  +GG  T E          + +I+++N   
Sbjct: 233 E--RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEE 277

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 95.1 bits (237), Expect = 3e-22
 Identities = 36/191 (18%), Positives = 58/191 (30%), Gaps = 13/191 (6%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           KW +    P        +   +L+YV  G GS     + + +Y+     W     M    
Sbjct: 128 KWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQ--T 185

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
           A S  G       I V  G         T+   V      KW      P  R + +    
Sbjct: 186 ARSLFGATVHDGRIIVAAGVTDTGL---TSSAEVYSITDNKWAPFEAFPQERSSLSLVSL 242

Query: 221 RGRLHVMGG-SGENRYTPEVDHWSLA---VKDGKPLEKEWRTEIPIPRGGPHRACVVVDD 276
            G L+ +GG +     + E+    L      +    EK+W   +             +  
Sbjct: 243 VGTLYAIGGFATLETESGELVPTELNDIWRYN--EEEKKWEGVLREIA--YAAGATFLPV 298

Query: 277 RLLVIGGQEGD 287
           RL V+   +  
Sbjct: 299 RLNVLRLTKMA 309

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} Length = 315

 Score = 52.0 bits (125), Expect = 1e-07
 Identities = 22/129 (17%), Positives = 43/129 (33%), Gaps = 27/129 (20%)

Query: 221 RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLV 280
           +  + ++   G   Y P  +    A                +P+   H + V  ++++ V
Sbjct: 4   QDLIFMISEEGAVAYDPAANECYCASLS-----------SQVPKN--HVSLVTKENQVFV 50

Query: 281 IGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV 339
            GG   +              + + +       D  + +W  +P +P P     F     
Sbjct: 51  AGGLFYN-----------EDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL--FGLGEA 97

Query: 340 NNSIVIVGG 348
            NSI +VGG
Sbjct: 98  LNSIYVVGG 106

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score =  110 bits (276), Expect = 9e-28
 Identities = 48/260 (18%), Positives = 79/260 (30%), Gaps = 51/260 (19%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
            W  ++     R D A +   N++Y+  G          +D YN   ++W  +   P   
Sbjct: 35  SWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPI--KRMDCYNVVKDSWYSKLGPP--T 90

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
               L        IY   G             +  DT T+ W   P +   R +      
Sbjct: 91  PRDSLAACAAEGKIYTSGGSEVGNSALYLFECY--DTRTESWHTKPSMLTQRCSHGMVEA 148

Query: 221 RGRLHVMGGSGEN-----------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 269
            G ++V GGS  N            Y P  + W+                +   R     
Sbjct: 149 NGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTE------------LCPMIEARKNH-- 194

Query: 270 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKP 328
             V V D++  +GGQ G                     D+V   D    +WK++  MP  
Sbjct: 195 GLVFVKDKIFAVGGQNGL-----------------GGLDNVEYYDIKLNEWKMVSPMPWK 237

Query: 329 DSHIEFAWVLVNNSIVIVGG 348
              +      V + + ++ G
Sbjct: 238 --GVTVKCAAVGSIVYVLAG 255

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 97.0 bits (242), Expect = 5e-23
 Identities = 39/243 (16%), Positives = 62/243 (25%), Gaps = 47/243 (19%)

Query: 121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ 180
              + +F G             +N  D +W                 V     +Y++ G 
Sbjct: 12  DYRIALFGGSQP-----QSCRYFNPKDYSWTDIRCPF--EKRRDAACVFWDNVVYILGGS 64

Query: 181 YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN------- 233
                  P       +     W      P PR + A     G+++  GGS          
Sbjct: 65  QL----FPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLF 120

Query: 234 -RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKP 292
             Y    + W         +           R       V  +  + V GG  G+     
Sbjct: 121 ECYDTRTESWHTK----PSM--------LTQRCSH--GMVEANGLIYVCGGSLGN----- 161

Query: 293 GSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEK 352
            +   +     E VYD     +    W  L  M +   +     V V + I  VGG    
Sbjct: 162 -NVSGRVLNSCE-VYD--PATE---TWTELCPMIEARKN--HGLVFVKDKIFAVGGQNGL 212

Query: 353 HPT 355
              
Sbjct: 213 GGL 215

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} Length = 306

 Score = 85.8 bits (213), Expect = 5e-19
 Identities = 27/190 (14%), Positives = 56/190 (29%), Gaps = 19/190 (10%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVH---SHVDIYNFTDNTWGGRFDMP 157
            W    +    R     ++   L+YV  G    +      +  ++Y+    TW     M 
Sbjct: 129 SWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI 188

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPAT 217
              A  + G+V     I+ V GQ G        +    D +  +W+ + P+P        
Sbjct: 189 --EARKNHGLVFVKDKIFAVGGQNGLGG---LDNVEYYDIKLNEWKMVSPMPWKGVTVKC 243

Query: 218 QLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDR 277
                 ++V+ G         +  ++           +W     +         + V   
Sbjct: 244 AAVGSIVYVLAGFQGVGRLGHILEYN-------TETDKWVANSKVRAFPVTSCLICV--- 293

Query: 278 LLVIGGQEGD 287
            +   G   +
Sbjct: 294 -VDTCGANEE 302

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  105 bits (265), Expect = 4e-26
 Identities = 46/261 (17%), Positives = 81/261 (31%), Gaps = 50/261 (19%)

Query: 102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNTWGGRFDM 156
           +    A  +PR   + +  +N +YV  G           + S+    +   + W G   +
Sbjct: 37  YLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL 96

Query: 157 PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPA 216
           P   A    G+      IYVV G    Q           D    KW ++  LP+  Y   
Sbjct: 97  PS--ARCLFGLGEVDDKIYVVAG-KDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHN 153

Query: 217 TQLWRGRLHVMGGSGEN--------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
                G ++ +GG  ++         Y P+   W                 +  PR    
Sbjct: 154 VISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKD------------LAPMKTPRSMF- 200

Query: 269 RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEV-VYDDVYMLDDEMKWKVLPSMPK 327
               +   ++++ GG   D                 V  +D         KW+V+   P+
Sbjct: 201 -GVAIHKGKIVIAGGVTED------------GLSASVEAFD-----LKTNKWEVMTEFPQ 242

Query: 328 PDSHIEFAWVLVNNSIVIVGG 348
                  + V +  S+  +GG
Sbjct: 243 E--RSSISLVSLAGSLYAIGG 261

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score =  100 bits (252), Expect = 3e-24
 Identities = 38/239 (15%), Positives = 80/239 (33%), Gaps = 35/239 (14%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGY-GSIDYVHSHVDIYNFTDNTWGGRFDMPRE 159
           +W  +   P  R      ++ + +YV AG     +     V  Y+     W    ++P  
Sbjct: 89  EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI- 147

Query: 160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL 219
                  +++    IY + G+   +        +  + +   W+DL P+  PR      +
Sbjct: 148 -KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIY--NPKKGDWKDLAPMKTPRSMFGVAI 204

Query: 220 WRGRLHVMGGSGEN-------RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV 272
            +G++ + GG  E+        +  + + W +             TE P  R     + V
Sbjct: 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVM------------TEFPQERSSI--SLV 250

Query: 273 VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEM-KWKVLPSMPKPDS 330
            +   L  IGG              +         +D++  +D+  +W  +    +  S
Sbjct: 251 SLAGSLYAIGGFAMIQ--------LESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYAS 301

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 87.0 bits (216), Expect = 2e-19
 Identities = 35/185 (18%), Positives = 61/185 (32%), Gaps = 7/185 (3%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
           KW ++K  P+       I    ++Y   G        + V IYN     W     M    
Sbjct: 138 KWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMK--T 195

Query: 161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW 220
             S  G+      I +  G         +A     D +T KW+ +   P  R + +    
Sbjct: 196 PRSMFGVAIHKGKIVIAGGVTEDGL---SASVEAFDLKTNKWEVMTEFPQERSSISLVSL 252

Query: 221 RGRLHVMGG-SGENRYTPEVDHWSLA-VKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRL 278
            G L+ +GG +     + E     +  +   +  +KEW   +   R     +C+     L
Sbjct: 253 AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGMLKEIRYASGASCLATRLNL 312

Query: 279 LVIGG 283
             +  
Sbjct: 313 FKLSK 317

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} Length = 318

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 251 PLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD 309
           P+E E        +   + + +V   +++ V+GG   D              +++ +   
Sbjct: 31  PMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDE-----------ENKDQPLQSY 79

Query: 310 VYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
            + LD    +W  LP +P       F    V++ I +V G
Sbjct: 80  FFQLDNVSSEWVGLPPLPSARCL--FGLGEVDDKIYVVAG 117

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 84.0 bits (207), Expect = 8e-18
 Identities = 29/200 (14%), Positives = 57/200 (28%), Gaps = 22/200 (11%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTW-----GGRF 154
           +W  +K+    R   +A  + +  + +  G      +     +YN T+  +        F
Sbjct: 479 EWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAML----LYNVTEEIFKDVTPKDEF 534

Query: 155 DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQ-----DLPPLP 209
                ++          + I +  G          A  F  D E           L    
Sbjct: 535 FQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPL 594

Query: 210 VPRY-APATQLWRGRLHVMGG-SGENRYTPEVDHWSLAVKDGK----PLEKEWRTEIPIP 263
             RY +    +   +L ++GG S    +       SL          P+ +    +  + 
Sbjct: 595 FQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHSLM 654

Query: 264 RGGPHRACVVVDDRLLVIGG 283
             G           + +IGG
Sbjct: 655 LAG-FSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 80.9 bits (199), Expect = 1e-16
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 45/281 (16%)

Query: 108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW--------GGRFDMPRE 159
            P+ R  G      N ++   G     Y  + +   +   +               + R 
Sbjct: 384 CPINRKFGDVDVAGNDVFYMGGS--NPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVAR- 440

Query: 160 MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP-ATQ 218
           M H+    ++    + ++ G+  P      +  ++ D +T++W  +  L   R+   A  
Sbjct: 441 MCHT-FTTISRNNQLLLIGGRKAPH--QGLSDNWIFDMKTREWSMIKSLSHTRFRHSACS 497

Query: 219 LWRGRLHVMGGSGEN----RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV-V 273
           L  G + ++GG  E      Y    + +          +   + E               
Sbjct: 498 LPDGNVLILGGVTEGPAMLLYNVTEEIFK---------DVTPKDEFFQNSLVSAGLEFDP 548

Query: 274 VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIE 333
           V  + +++GG   D            +  ++ +       +      V+  +  P     
Sbjct: 549 VSKQGIILGGGFMDQT----------TVSDKAIIFKYDAENATEPITVIKKLQHPLFQRY 598

Query: 334 F--AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT 372
                 +    ++IVGGT+      +       I   +  +
Sbjct: 599 GSQIKYITPRKLLIVGGTSPSGLFDRTN----SIISLDPLS 635

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 77.9 bits (191), Expect = 9e-16
 Identities = 32/272 (11%), Positives = 66/272 (24%), Gaps = 51/272 (18%)

Query: 101 KWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP- 157
                   PV R+      I   N L +  G  +     S   I++     W     +  
Sbjct: 429 IEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH 488

Query: 158 -REMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRY 213
            R     H         + ++ G              + +   + ++D+ P         
Sbjct: 489 TR---FRHSACSLPDGNVLILGG------VTEGPAMLLYNVTEEIFKDVTPKDEFFQNSL 539

Query: 214 APATQLWRGRLH---VMGG--SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPH 268
             A   +        ++GG    +   + +   +     D +   +       +      
Sbjct: 540 VSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKY---DAENATEPITVIKKLQHPLFQ 596

Query: 269 R----ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD-DVYMLDDE-MKWKVL 322
           R       +   +LL++GG                S          +  LD        +
Sbjct: 597 RYGSQIKYITPRKLLIVGG---------------TSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 323 PSMPKPDSHIEFAWV------LVNNSIVIVGG 348
           P   +                    +I I+GG
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGG 673

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695

 Score = 51.7 bits (123), Expect = 2e-07
 Identities = 19/154 (12%), Positives = 39/154 (25%), Gaps = 21/154 (13%)

Query: 99  ELKWEKMK---AAPVPRLDGAAIQI----KNLLYVFAGYGSIDYVHSHVDIYNFTDNTW- 150
           E  ++ +          L  A ++     K  + +  G+     V     I+ +      
Sbjct: 522 EEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENAT 581

Query: 151 -----GGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL 205
                  +   P    +         R + +V G         T     LD  ++    +
Sbjct: 582 EPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSI 641

Query: 206 PPLPVPRYAP--------ATQLWRGRLHVMGGSG 231
           P                       G +H++GG  
Sbjct: 642 PISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGA 675

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 56.1 bits (134), Expect = 1e-08
 Identities = 31/264 (11%), Positives = 77/264 (29%), Gaps = 26/264 (9%)

Query: 101 KWEKMKAAPVPRLD-GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTW--GGRFDMP 157
            W       V R    +A      ++   G  S      + ++Y+ +  TW       + 
Sbjct: 276 SWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVN 335

Query: 158 REMAHSHLGMVTDGRYIYVVTGQYGP--QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP 215
             +     G+     + ++   + G   Q    TA  +   + +   +        R   
Sbjct: 336 PMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVA 395

Query: 216 ATQL---------WRGRLHVMGGSGENRYTP-EVDHWSLAVKDGKPLEKEWRTEIPIPRG 265
              +          +G++   GGS + + +    +   + + +             +   
Sbjct: 396 PDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFA 455

Query: 266 -GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPS 324
              H + V+ D    + GGQ      +  +P+F        +Y       ++  +     
Sbjct: 456 RTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVF-----TPEIYVP-----EQDTFYKQNP 505

Query: 325 MPKPDSHIEFAWVLVNNSIVIVGG 348
                 +   + +L +  +   GG
Sbjct: 506 NSIVRVYHSISLLLPDGRVFNGGG 529

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 23/118 (19%), Positives = 39/118 (33%), Gaps = 15/118 (12%)

Query: 135 YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
              +    ++ +      R     +      G+  DG    VVTG            T +
Sbjct: 216 GGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND------AKKTSL 269

Query: 195 LDTETKKWQDLPPLPVPR-YAPATQLWRGRLHVMGGSGEN--------RYTPEVDHWS 243
            D+ +  W   P + V R Y  +  +  GR+  +GGS            Y+P    W+
Sbjct: 270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 327

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.6 bits (99), Expect = 2e-04
 Identities = 30/212 (14%), Positives = 51/212 (24%), Gaps = 43/212 (20%)

Query: 104 KMKAAPVPRLDGAAIQIKNL-LYVFAGYGSIDYVHSHVDIYNFTDNTWGG---------- 152
             K  P+   D   +   +   ++F       +        N+   +  G          
Sbjct: 331 NAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390

Query: 153 -RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLD-----TETKKWQDLP 206
            R   P  M  + +        I    G    Q    T +  ++      T         
Sbjct: 391 NRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASN 450

Query: 207 PLPVPR-YAPATQLWRGRLHVMGGSGEN-------------RYTPEVDHWSLAVKDGKPL 252
            L   R +  +  L  G   + GG                  Y PE D +          
Sbjct: 451 GLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ------- 503

Query: 253 EKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQ 284
                    I R     + ++ D R+   GG 
Sbjct: 504 -----NPNSIVRVYHSISLLLPDGRVFNGGGG 530

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A Length = 656

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 24/163 (14%), Positives = 41/163 (25%), Gaps = 16/163 (9%)

Query: 89  PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH-------VD 141
             +     A + +  +  A      +           +  G GS DY  S        + 
Sbjct: 377 SGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFG-GSPDYQDSDATTNAHIIT 435

Query: 142 IYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQ---CRGPTAHTFVLD 196
           +     +            A +    V   DG   ++  GQ          P     +  
Sbjct: 436 LGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYV 494

Query: 197 TETKKWQDLPPLPVPRYAP--ATQLWRGRLHVMGGSGENRYTP 237
            E   +    P  + R     +  L  GR+   GG      T 
Sbjct: 495 PEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT 537

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 36/270 (13%), Positives = 69/270 (25%), Gaps = 79/270 (29%)

Query: 141 DIYNFTDNTWGGRF------DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV 194
            I    D   G             EM    +  V    Y ++++     + R P+  T +
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTEQRQPSMMTRM 111

Query: 195 -LDTETKKWQD---LPPLPVPRYAPATQLWRG----R------LHVMGGSGENRYTPEVD 240
            ++   + + D        V R  P  +L +     R      +  + GSG+        
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK-------- 163

Query: 241 HWSLA---VKDGKPLEKE-----WRTEIPIPRGGPHRACVVVDDRLLVI----GGQEGDF 288
              +A       K   K      W   + +         + +  +LL           D 
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKIFW---LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 289 MAKPGSPI---------FKCSRRNE---VVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAW 336
            +     I            S+  E   +V  +V    +   W              F  
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ---NAKAWNA------------FNL 264

Query: 337 ---VLV---NNSIV-IVGGTTEKHPTTKKM 359
              +L+      +   +   T  H +    
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHH 294

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	381
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	100.0
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	100.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	100.0
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	100.0
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	100.0
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	100.0
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	100.0
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	100.0
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.92
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.75
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	97.52
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.45
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	97.36
3jrp_A	379	Fusion protein of protein transport protein SEC13	97.34
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	97.31
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.27
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	97.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.17
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.95
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	96.94
3ow8_A	321	WD repeat-containing protein 61; structural genomi	96.94
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.89
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	96.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	96.84
3jro_A	753	Fusion protein of protein transport protein SEC13	96.75
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.7
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	96.66
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	96.66
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	96.55
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.5
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.44
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	96.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.37
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	96.3
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	96.3
2pm7_B	297	Protein transport protein SEC13, protein transport	96.29
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	96.23
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	96.19
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.19
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	96.16
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	96.04
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	96.02
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	95.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	95.95
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.84
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.82
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.81
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	95.72
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.67
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	95.56
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	95.56
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	95.55
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	95.53
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	95.5
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.46
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	95.4
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	95.4
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.36
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	95.32
3jro_A	753	Fusion protein of protein transport protein SEC13	95.3
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	95.27
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.24
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.22
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	95.18
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	95.14
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	95.13
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	94.94
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	94.92
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.89
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.88
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	94.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.86
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	94.85
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.81
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	94.75
4a2l_A	795	BT_4663, two-component system sensor histidine kin	94.74
3ow8_A	321	WD repeat-containing protein 61; structural genomi	94.71
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	94.71
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	94.68
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	94.66
3v9f_A	781	Two-component system sensor histidine kinase/RESP	94.64
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.64
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.58
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	94.54
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.42
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	94.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	94.36
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	94.34
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.27
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	94.17
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.15
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	94.14
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	94.13
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	94.08
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	93.92
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	93.77
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	93.7
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	93.63
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.62
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.62
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.56
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	93.52
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	93.45
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	93.35
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.31
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.31
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	93.31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.22
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	93.19
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	93.18
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.05
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	92.99
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.71
3ju4_A	670	Endo-N-acetylneuraminidase; endonf, polysia, high-	92.61
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	92.59
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.51
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	92.42
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	92.4
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	92.32
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	92.1
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	92.06
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	91.84
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	91.71
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	91.71
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	91.56
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	91.55
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	91.53
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.47
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	90.79
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	90.71
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	90.59
2pm7_B	297	Protein transport protein SEC13, protein transport	90.35
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	90.3
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	89.95
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	89.85
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	89.6
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	89.51
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	89.45
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	89.26
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	89.21
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	89.2
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	89.15
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	88.95
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	88.86
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	88.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	88.47
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	88.44
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	88.07
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	87.96
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	87.18
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	87.12
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	87.02
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	86.88
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	86.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	86.69
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	86.58
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	86.23
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.2
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	86.13
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	86.06
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	85.87
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	85.62
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	85.38
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	84.66
1qhu_A	460	Protein (hemopexin); beta propeller, HAEM binding	84.45
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	84.27
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	84.13
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	84.1
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	83.76
4a2l_A	795	BT_4663, two-component system sensor histidine kin	83.7
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	83.66
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	83.28
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	82.89
1itv_A	195	MMP9; adaptive molecular recognition, beta propell	82.85
1pex_A	207	Collagenase-3, MMP-13; C-terminal hemopexin-like d	82.7
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	82.26
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	82.04
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	82.03
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	81.98
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	81.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	81.11
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	80.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	80.48
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	80.14
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	80.09

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=3.8e-47  Score=347.93  Aligned_cols=278  Identities=17%  Similarity=0.247  Sum_probs=232.5

Q ss_pred             HHHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeE
Q 016877           24 VMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWE  103 (381)
Q Consensus        24 ~~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~  103 (381)
                      +..|+++.+++.||++||.++ ..                                         .+.++.||+.+++|+
T Consensus        15 ~~~~~~~~~~~~i~v~GG~~~-~~-----------------------------------------~~~~~~~d~~~~~W~   52 (308)
T 1zgk_A           15 PRGSHAPKVGRLIYTAGGYFR-QS-----------------------------------------LSYLEAYNPSNGTWL   52 (308)
T ss_dssp             ------CCCCCCEEEECCBSS-SB-----------------------------------------CCCEEEEETTTTEEE
T ss_pred             eCCccccCCCCEEEEEeCcCC-CC-----------------------------------------cceEEEEcCCCCeEe
Confidence            347999999999999999621 11                                         125778888999999


Q ss_pred             EccCCCCCCCCceEEEECCEEEEEecCC---CCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCC
Q 016877          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYG---SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQ  180 (381)
Q Consensus       104 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~---~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~  180 (381)
                      +++++|.+|..|+++.++++|||+||..   ......+++++||+.+++|++++++|.+  |..+++++.+++||++||.
T Consensus        53 ~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~  130 (308)
T 1zgk_A           53 RLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVP--RNRIGVGVIDGHIYAVGGS  130 (308)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSC--CBTCEEEEETTEEEEECCE
T ss_pred             ECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcC--ccccEEEEECCEEEEEcCC
Confidence            9999999999999999999999999983   2334567899999999999999998874  7888999999999999998


Q ss_pred             CCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEec
Q 016877          181 YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEI  260 (381)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~  260 (381)
                      ++..   .++++++||+.+++|+.++++|.+|..|++++++++||++||........+       ++.||+.+++|+.++
T Consensus       131 ~~~~---~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~~yd~~~~~W~~~~  200 (308)
T 1zgk_A          131 HGCI---HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNS-------AECYYPERNEWRMIT  200 (308)
T ss_dssp             ETTE---ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCC-------EEEEETTTTEEEECC
T ss_pred             CCCc---ccccEEEECCCCCeEeECCCCCccccceEEEEECCEEEEEeCCCCCCcCce-------EEEEeCCCCeEeeCC
Confidence            7643   368899999999999999999999999999999999999999876543333       334468899999999


Q ss_pred             CCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEE
Q 016877          261 PIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLV  339 (381)
Q Consensus       261 ~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~  339 (381)
                      ++|.+|..++++.++++||++||.+...                 ..++++.|| .+++|+.++++|.+|..  ++++++
T Consensus       201 ~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~--~~~~~~  261 (308)
T 1zgk_A          201 AMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMKHRRSA--LGITVH  261 (308)
T ss_dssp             CCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCSSCCBS--CEEEEE
T ss_pred             CCCCccccceEEEECCEEEEEeCCCCCC-----------------ccceEEEEeCCCCcEEECCCCCCCccc--eEEEEE
Confidence            9999999999999999999999986432                 267899999 89999999999888765  456789


Q ss_pred             CCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       340 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      +++||++||.+...       ..+++++||+++++|+.++.|
T Consensus       262 ~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~  296 (308)
T 1zgk_A          262 QGRIYVLGGYDGHT-------FLDSVECYDPDTDTWSEVTRM  296 (308)
T ss_dssp             TTEEEEECCBCSSC-------BCCEEEEEETTTTEEEEEEEC
T ss_pred             CCEEEEEcCcCCCc-------ccceEEEEcCCCCEEeecCCC
Confidence            99999999987643       467899999999999998765

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=1.8e-45  Score=336.42  Aligned_cols=256  Identities=21%  Similarity=0.339  Sum_probs=219.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      .++.||+.+++|++++++|.+|..|+++.++++|||+||.+  ....+++++||+.+++|+.++++|.  +|..|++++.
T Consensus        25 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~  100 (306)
T 3ii7_A           25 SCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLGPPT--PRDSLAACAA  100 (306)
T ss_dssp             SEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBS--SSBCCEEEEEETTTTEEEEEECCSS--CCBSCEEEEE
T ss_pred             eEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCCCCc--cccceeEEEE
Confidence            67788889999999999999999999999999999999987  4456889999999999999999887  4788999999


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      +++||++||.+...  ..++++++||+.+++|+.++++|.+|..|++++++++||++||.......   ......++.||
T Consensus       101 ~~~iyv~GG~~~~~--~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~---~~~~~~~~~yd  175 (306)
T 3ii7_A          101 EGKIYTSGGSEVGN--SALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVS---GRVLNSCEVYD  175 (306)
T ss_dssp             TTEEEEECCBBTTB--SCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTT---CEECCCEEEEE
T ss_pred             CCEEEEECCCCCCC--cEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCc---ccccceEEEeC
Confidence            99999999987322  24789999999999999999999999999999999999999997654321   01122344456


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCC
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~  329 (381)
                      +.+++|+.++++|.++..++++.++++||++||.+...                 ..++++.|| .+++|+.++++|.+|
T Consensus       176 ~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLG-----------------GLDNVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTE-----------------EBCCEEEEETTTTEEEECCCCSCCB
T ss_pred             CCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCC-----------------CCceEEEeeCCCCcEEECCCCCCCc
Confidence            89999999999999999999999999999999986431                 367899999 899999999998887


Q ss_pred             CCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       330 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      ..  +++++++++|||+||.+...       ..+++++||+++++|+.++.|
T Consensus       239 ~~--~~~~~~~~~i~v~GG~~~~~-------~~~~~~~yd~~~~~W~~~~~~  281 (306)
T 3ii7_A          239 VT--VKCAAVGSIVYVLAGFQGVG-------RLGHILEYNTETDKWVANSKV  281 (306)
T ss_dssp             SC--CEEEEETTEEEEEECBCSSS-------BCCEEEEEETTTTEEEEEEEE
T ss_pred             cc--eeEEEECCEEEEEeCcCCCe-------eeeeEEEEcCCCCeEEeCCCc
Confidence            65  45678899999999987654       467899999999999998754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.4e-45  Score=333.90  Aligned_cols=252  Identities=18%  Similarity=0.296  Sum_probs=217.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      .+++||+.+++|++++++|.+|..|+++.++++|||+||.+... ..+++++||+.+++|+.++++|.  +|..|+++++
T Consensus        31 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~  107 (302)
T 2xn4_A           31 SVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSL-RVRTVDSYDPVKDQWTSVANMRD--RRSTLGAAVL  107 (302)
T ss_dssp             CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSS-BCCCEEEEETTTTEEEEECCCSS--CCBSCEEEEE
T ss_pred             cEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCc-cccceEEECCCCCceeeCCCCCc--cccceEEEEE
Confidence            57788888999999999999999999999999999999987554 45789999999999999999887  4788999999


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      +++||++||.++..   .++++++||+.+++|+.++++|.+|..|++++++++||++||......     .....++.||
T Consensus       108 ~~~iyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~-----~~~~~~~~yd  179 (302)
T 2xn4_A          108 NGLLYAVGGFDGST---GLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASR-----QCLSTVECYN  179 (302)
T ss_dssp             TTEEEEEEEECSSC---EEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTT-----EECCCEEEEE
T ss_pred             CCEEEEEcCCCCCc---cCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCC-----ccccEEEEEe
Confidence            99999999987643   378999999999999999999999999999999999999999865321     1112344456


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCC
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPD  329 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~  329 (381)
                      +.+++|+.++++|.+|..++++.++++||++||.+...                 ..++++.|| ++++|+.++++|.+|
T Consensus       180 ~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~~~~r  242 (302)
T 2xn4_A          180 ATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPL-----------------VRKSVEVYDPTTNAWRQVADMNMCR  242 (302)
T ss_dssp             TTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSS-----------------BCCCEEEEETTTTEEEEECCCSSCC
T ss_pred             CCCCcEEECCCCccccccccEEEECCEEEEECCCCCCc-----------------ccceEEEEeCCCCCEeeCCCCCCcc
Confidence            89999999999999999999999999999999986432                 356799999 899999999998887


Q ss_pred             CCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEee
Q 016877          330 SHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA  379 (381)
Q Consensus       330 ~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  379 (381)
                      ..  ++++.++++||++||.+...       ..+++++||+++++|+.++
T Consensus       243 ~~--~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          243 RN--AGVCAVNGLLYVVGGDDGSC-------NLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             BS--CEEEEETTEEEEECCBCSSS-------BCCCEEEEETTTTEEEECS
T ss_pred             cc--CeEEEECCEEEEECCcCCCc-------ccccEEEEcCCCCeEEECC
Confidence            65  45688999999999987553       4578999999999999986

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=5.9e-45  Score=332.13  Aligned_cols=252  Identities=17%  Similarity=0.294  Sum_probs=218.5

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe---EecCCCCCCCCccceEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT---WGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~---W~~~~~~~~~~~r~~~~~  167 (381)
                      .++.||+.+++|++++++|.+|..|+++.++++|||+||.+.. ...+++++||+.+++   |+.++++|.  +|..|++
T Consensus        32 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~~~~~d~~~~~~~~W~~~~~~p~--~r~~~~~  108 (301)
T 2vpj_A           32 VVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGR-SRLSSVECLDYTADEDGVWYSVAPMNV--RRGLAGA  108 (301)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSS-CBCCCEEEEETTCCTTCCCEEECCCSS--CCBSCEE
T ss_pred             EEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCC-ccCceEEEEECCCCCCCeeEECCCCCC--CccceeE
Confidence            5777888899999999999999999999999999999998744 346789999999999   999999887  4788899


Q ss_pred             EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeee
Q 016877          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      +..+++||++||.++..   .++++++||+.+++|+.++++|.+|..|++++++++||++||.+.......       ++
T Consensus       109 ~~~~~~lyv~GG~~~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~  178 (301)
T 2vpj_A          109 TTLGDMIYVSGGFDGSR---RHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNS-------VE  178 (301)
T ss_dssp             EEETTEEEEECCBCSSC---BCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCC-------EE
T ss_pred             EEECCEEEEEcccCCCc---ccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCCCCCcccce-------EE
Confidence            99999999999987643   378999999999999999999999999999999999999999876443333       33


Q ss_pred             cCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCC
Q 016877          248 DGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (381)
Q Consensus       248 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~  326 (381)
                      .||+.+++|+.++++|.++..++++.++++||++||.+...                 ..++++.|| .+++|+.++.+|
T Consensus       179 ~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p  241 (301)
T 2vpj_A          179 KYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTA-----------------HLSSVEAYNIRTDSWTTVTSMT  241 (301)
T ss_dssp             EEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEEECCCS
T ss_pred             EEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCc-----------------ccceEEEEeCCCCcEEECCCCC
Confidence            44588999999999999999999999999999999987432                 256799999 899999999998


Q ss_pred             CCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          327 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      .+|..  ++++.++++||++||.+...       ..+++++||+++++|+.++.|
T Consensus       242 ~~r~~--~~~~~~~~~i~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~  287 (301)
T 2vpj_A          242 TPRCY--VGATVLRGRLYAIAGYDGNS-------LLSSIECYDPIIDSWEVVTSM  287 (301)
T ss_dssp             SCCBS--CEEEEETTEEEEECCBCSSS-------BEEEEEEEETTTTEEEEEEEE
T ss_pred             Ccccc--eeEEEECCEEEEEcCcCCCc-------ccccEEEEcCCCCeEEEcCCC
Confidence            88765  45688899999999987654       457899999999999998764

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.8e-43  Score=323.20  Aligned_cols=260  Identities=17%  Similarity=0.249  Sum_probs=212.4

Q ss_pred             ceEeecCCCCCeEEccCC--CCCCCCceEEEECCEEEEEecC-----CCCCCcccceEEEeCCCCeEecCCCCCCCCccc
Q 016877           91 TFQDLPAPELKWEKMKAA--PVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS  163 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~--p~~r~~~~~~~~~~~iyv~GG~-----~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~  163 (381)
                      .++.||+.+++|+. +++  |.+|.+|+++.++++|||+||.     .......+++++||+.+++|+.++++|.  +|.
T Consensus        14 ~~~~yd~~~~~W~~-~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~   90 (315)
T 4asc_A           14 GAVAYDPAANECYC-ASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPS--PRC   90 (315)
T ss_dssp             EEEEEETTTTEEEE-EECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSS--CEE
T ss_pred             ceEEECCCCCeEec-CCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCc--chh
Confidence            56777888889987 655  4589999999999999999996     2233345679999999999999999887  488


Q ss_pred             eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCC-CCCCCCCccce
Q 016877          164 HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG-ENRYTPEVDHW  242 (381)
Q Consensus       164 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~-~~~~~~~~~~~  242 (381)
                      .|+++..+++||++||.+.......++++++||+.+++|+.++++|.+|..|++++++++|||+||.. ......+    
T Consensus        91 ~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~----  166 (315)
T 4asc_A           91 LFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNK----  166 (315)
T ss_dssp             SCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCC----
T ss_pred             ceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccce----
Confidence            89999999999999997632222458999999999999999999999999999999999999999984 3222322    


Q ss_pred             EeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEE
Q 016877          243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV  321 (381)
Q Consensus       243 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~  321 (381)
                         ++.||+.+++|+.++++|.+|..++++.++++||++||.....                 ..++++.|| .+++|+.
T Consensus       167 ---~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          167 ---MCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-----------------LTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             ---EEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-----------------EEEEEEEEETTTTEEEE
T ss_pred             ---EEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-----------------ccceEEEEECCCCeEEE
Confidence               3344688999999999999999999999999999999986432                 356799999 8999999


Q ss_pred             cCCCCCCCCCcceEEEEECCEEEEEcccccccC--CceeeeeecceEEEEcCCCceEEee
Q 016877          322 LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHP--TTKKMVLVGEIFQFNLNTLVAVLNA  379 (381)
Q Consensus       322 i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~--~~~~~~~~~~v~~yd~~~~~W~~i~  379 (381)
                      ++++|.+|..  ++++.++++||++||.+....  .......++++++||+++++|+.+.
T Consensus       227 ~~~~p~~r~~--~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  284 (315)
T 4asc_A          227 FEAFPQERSS--LSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGVL  284 (315)
T ss_dssp             ECCCSSCCBS--CEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEEE
T ss_pred             CCCCCCcccc--eeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhhc
Confidence            9999888765  456889999999999865321  0011125679999999999999874

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=4.5e-43  Score=327.45  Aligned_cols=297  Identities=17%  Similarity=0.166  Sum_probs=217.8

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCC--CCCeE
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAP--ELKWE  103 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~W~  103 (381)
                      .|++++++++||++||.++                                             +.+++||+.  +++|+
T Consensus        12 ~~~~~~~~~~iyv~GG~~~---------------------------------------------~~~~~~d~~~~~~~W~   46 (357)
T 2uvk_A           12 SGTGAIDNDTVYIGLGSAG---------------------------------------------TAWYKLDTQAKDKKWT   46 (357)
T ss_dssp             SCEEEEETTEEEEECGGGT---------------------------------------------TCEEEEETTSSSCCEE
T ss_pred             ceEEEEECCEEEEEeCcCC---------------------------------------------CeEEEEccccCCCCee
Confidence            5778888999999999443                                             135566665  58999


Q ss_pred             EccCCC-CCCCCceEEEECCEEEEEecC-C---CCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEc
Q 016877          104 KMKAAP-VPRLDGAAIQIKNLLYVFAGY-G---SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (381)
Q Consensus       104 ~l~~~p-~~r~~~~~~~~~~~iyv~GG~-~---~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~G  178 (381)
                      +++++| .+|..|+++.++++|||+||. +   .....++++++||+.+++|+++++++ |.+|..|++++.+++||++|
T Consensus        47 ~~~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~-p~~r~~~~~~~~~~~iyv~G  125 (357)
T 2uvk_A           47 ALAAFPGGPRDQATSAFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHA-PMGMAGHVTFVHNGKAYVTG  125 (357)
T ss_dssp             ECCCCTTCCCBSCEEEEETTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCC-SSCCSSEEEEEETTEEEEEE
T ss_pred             ECCCCCCCcCccceEEEECCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCC-CcccccceEEEECCEEEEEe
Confidence            999999 899999999999999999998 2   23345688999999999999999998 55788999999999999999


Q ss_pred             CCCCCCC-------------------------------CCCcceEEEEECCCCcEEeCCCCCCCCcc-cEEEEECCEEEE
Q 016877          179 GQYGPQC-------------------------------RGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLWRGRLHV  226 (381)
Q Consensus       179 G~~~~~~-------------------------------~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~~~~lyv  226 (381)
                      |.+....                               ...++++++||+.+++|+.++++|.+|.. |++++++++|||
T Consensus       126 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv  205 (357)
T 2uvk_A          126 GVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWL  205 (357)
T ss_dssp             CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEE
T ss_pred             CcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEE
Confidence            9764210                               01258999999999999999999976554 999999999999


Q ss_pred             EccCCCCCCCCCccceEeeeecCCccCCceEEecCC--CCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCce
Q 016877          227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPI--PRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNE  304 (381)
Q Consensus       227 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~--p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~  304 (381)
                      +||..... ....+   +.++++|+.+++|+.++++  |+.+..++++.++++||++||.....................
T Consensus       206 ~GG~~~~~-~~~~~---v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~  281 (357)
T 2uvk_A          206 INGEAKPG-LRTDA---VFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGL  281 (357)
T ss_dssp             ECCEEETT-EECCC---EEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTC
T ss_pred             EeeecCCC-cccCc---eEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccc
Confidence            99975432 11122   2234456799999998877  455667779999999999999753210000000000000001


Q ss_pred             eecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeec
Q 016877          305 VVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAM  380 (381)
Q Consensus       305 ~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~  380 (381)
                      ...++++.|| ++++|+.++++|.+|..  ++++.++++|||+||.+....      .++++++|++++++|..+..
T Consensus       282 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~------~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          282 KKSYSTDIHLWHNGKWDKSGELSQGRAY--GVSLPWNNSLLIIGGETAGGK------AVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CCEECCEEEECC---CEEEEECSSCCBS--SEEEEETTEEEEEEEECGGGC------EEEEEEEEEC-CCSCEEEC-
T ss_pred             cceeeEEEEecCCCceeeCCCCCCCccc--ceeEEeCCEEEEEeeeCCCCC------EeeeEEEEEEcCcEeEeeec
Confidence            1234688898 89999999999988876  455889999999999986653      46799999999999987643

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=1.4e-42  Score=319.05  Aligned_cols=286  Identities=18%  Similarity=0.300  Sum_probs=231.3

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce-ee--ecCCCCCCCceeEEeee-ccccccc---------ccCcceEeecCC
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS-II--LPNNGPQKGENIGVKTK-KDVVPKR---------ILPATFQDLPAP   98 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~--~p~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~   98 (381)
                      .++.||++||.       .+++|||.+++ ..  +|...+|..++++..++ ++..|+.         .+...++.||+.
T Consensus        14 ~~~~i~~~GG~-------~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~   86 (318)
T 2woz_A           14 VKDLILLVNDT-------AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNV   86 (318)
T ss_dssp             EEEEEEEECSS-------EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETT
T ss_pred             ecchhhhcccc-------ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCC
Confidence            46899999993       47999999999 33  33356788887776555 6666652         233348899999


Q ss_pred             CCCeEEccCCCCCCCCceEEEECCEEEEEecCCC-CCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEE
Q 016877           99 ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVV  177 (381)
Q Consensus        99 ~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~  177 (381)
                      +++|++++++|.+|..|+++.++++|||+||.+. ....++++++||+.+++|+.++++|.  +|..|++++.+++||++
T Consensus        87 ~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~  164 (318)
T 2woz_A           87 SSEWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPI--KVYGHNVISHNGMIYCL  164 (318)
T ss_dssp             TTEEEECSCBSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSS--CEESCEEEEETTEEEEE
T ss_pred             CCcEEECCCCCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCC--cccccEEEEECCEEEEE
Confidence            9999999999999999999999999999999863 34556889999999999999998887  47889999999999999


Q ss_pred             cCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceE
Q 016877          178 TGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR  257 (381)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~  257 (381)
                      ||.....  ..++++++||+++++|+.++++|.+|..|++++++++|||+||.....       ....++.||+.+++|+
T Consensus       165 GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W~  235 (318)
T 2woz_A          165 GGKTDDK--KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-------LSASVEAFDLKTNKWE  235 (318)
T ss_dssp             CCEESSS--CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-------EEEEEEEEETTTCCEE
T ss_pred             cCCCCCC--CccceEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-------ccceEEEEECCCCeEE
Confidence            9985433  247899999999999999999999999999999999999999976532       2334556679999999


Q ss_pred             EecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEE
Q 016877          258 TEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAW  336 (381)
Q Consensus       258 ~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~  336 (381)
                      .++++|.+|..++++.++++||++||........        ........++++.|| ++++|+.+  +|.+|..+  ++
T Consensus       236 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~--~~  303 (318)
T 2woz_A          236 VMTEFPQERSSISLVSLAGSLYAIGGFAMIQLES--------KEFAPTEVNDIWKYEDDKKEWAGM--LKEIRYAS--GA  303 (318)
T ss_dssp             ECCCCSSCCBSCEEEEETTEEEEECCBCCBC------------CCBCCBCCCEEEEETTTTEEEEE--ESCCGGGT--TC
T ss_pred             ECCCCCCcccceEEEEECCEEEEECCeeccCCCC--------ceeccceeeeEEEEeCCCCEehhh--cccccccc--cc
Confidence            9999999999999999999999999986531100        000112467899999 99999998  56666654  45


Q ss_pred             EEECCEEEEEc
Q 016877          337 VLVNNSIVIVG  347 (381)
Q Consensus       337 ~~~~~~l~v~G  347 (381)
                      ++++++||++.
T Consensus       304 ~~~~~~iyi~~  314 (318)
T 2woz_A          304 SCLATRLNLFK  314 (318)
T ss_dssp             EEEEEEEEGGG
T ss_pred             eeeCCEEEEEE
Confidence            78899999874

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=100.00  E-value=6.3e-41  Score=307.98  Aligned_cols=259  Identities=19%  Similarity=0.300  Sum_probs=210.1

Q ss_pred             ceEeecCCCCCeEEcc-CCCCCCCCceEEEECCEEEEEecCCC----C-CCcccceEEEeCCCCeEecCCCCCCCCccce
Q 016877           91 TFQDLPAPELKWEKMK-AAPVPRLDGAAIQIKNLLYVFAGYGS----I-DYVHSHVDIYNFTDNTWGGRFDMPREMAHSH  164 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~-~~p~~r~~~~~~~~~~~iyv~GG~~~----~-~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~  164 (381)
                      .++.||+.+++|...+ +.|.+|.+|+++..+++|||+||...    . ....+++++||+.+++|+.++++|.+  |..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~  102 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSA--RCL  102 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSC--BCS
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcc--ccc
Confidence            4789999999998843 23478999999999999999999631    1 12345699999999999999998884  788


Q ss_pred             EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCC-CCCCCccceE
Q 016877          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGEN-RYTPEVDHWS  243 (381)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~-~~~~~~~~~~  243 (381)
                      |++++.+++||++||..... ...++++++||+.+++|+.++++|.+|..|++++++++||++||.... ....      
T Consensus       103 ~~~~~~~~~iyv~GG~~~~~-~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~------  175 (318)
T 2woz_A          103 FGLGEVDDKIYVVAGKDLQT-EASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTN------  175 (318)
T ss_dssp             CEEEEETTEEEEEEEEBTTT-CCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCC------
T ss_pred             cceEEECCEEEEEcCccCCC-CcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccc------
Confidence            99999999999999986422 134799999999999999999999999999999999999999997432 1222      


Q ss_pred             eeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877          244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (381)
Q Consensus       244 ~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i  322 (381)
                       .++.||+.+++|+.++++|.+|..++++.++++||++||.....                 ..++++.|| ++++|+.+
T Consensus       176 -~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~  237 (318)
T 2woz_A          176 -RVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG-----------------LSASVEAFDLKTNKWEVM  237 (318)
T ss_dssp             -CEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEEEEETTE-----------------EEEEEEEEETTTCCEEEC
T ss_pred             -eEEEEcCCCCEEEECCCCCCCcccceEEEECCEEEEEcCcCCCC-----------------ccceEEEEECCCCeEEEC
Confidence             23445689999999999999999999999999999999986431                 356799999 89999999


Q ss_pred             CCCCCCCCCcceEEEEECCEEEEEcccccccCCce--eeeeecceEEEEcCCCceEEe
Q 016877          323 PSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTK--KMVLVGEIFQFNLNTLVAVLN  378 (381)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~--~~~~~~~v~~yd~~~~~W~~i  378 (381)
                      +++|.+|..  ++++.++++||++||.+.......  .....+++|+||+++++|+.+
T Consensus       238 ~~~p~~r~~--~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          238 TEFPQERSS--ISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCCSSCCBS--CEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             CCCCCcccc--eEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            999888765  456899999999999875321000  011467899999999999987

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=100.00  E-value=3.8e-40  Score=300.50  Aligned_cols=285  Identities=15%  Similarity=0.206  Sum_probs=234.8

Q ss_pred             hheeEcCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEeee-ccccccc---ccCcceEeecCCCCC
Q 016877           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTK-KDVVPKR---ILPATFQDLPAPELK  101 (381)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~~~  101 (381)
                      ..+.+++.||++||.+. ..++++++||+.+++ ..++. +.+|..++++..++ ++..++.   .....++.||+.+++
T Consensus        10 ~~~~~~~~i~v~GG~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~   88 (302)
T 2xn4_A           10 TPMNLPKLMVVVGGQAP-KAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQ   88 (302)
T ss_dssp             -----CEEEEEECCBSS-SBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTE
T ss_pred             cccCCCCEEEEECCCCC-CCCCcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCc
Confidence            34457899999999654 467889999999999 77776 67888888876655 6766653   234578999999999


Q ss_pred             eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCC
Q 016877          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (381)
Q Consensus       102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  181 (381)
                      |++++++|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.++++|.  +|..+++++.+++||++||.+
T Consensus        89 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~  165 (302)
T 2xn4_A           89 WTSVANMRDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAPMNT--RRSSVGVGVVGGLLYAVGGYD  165 (302)
T ss_dssp             EEEECCCSSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECCCSS--CCBSCEEEEETTEEEEECCEE
T ss_pred             eeeCCCCCccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCCCCC--cccCceEEEECCEEEEEeCCC
Confidence            999999999999999999999999999987644 45789999999999999999987  478889999999999999987


Q ss_pred             CCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecC
Q 016877          182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP  261 (381)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  261 (381)
                      +... ..++++++||+++++|+.++++|.+|..|++++++++||++||.+......+       ++.||+.+++|+.+++
T Consensus       166 ~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------~~~yd~~~~~W~~~~~  237 (302)
T 2xn4_A          166 VASR-QCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVLNNLLYAVGGHDGPLVRKS-------VEVYDPTTNAWRQVAD  237 (302)
T ss_dssp             TTTT-EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBSSSSBCCC-------EEEEETTTTEEEEECC
T ss_pred             CCCC-ccccEEEEEeCCCCcEEECCCCccccccccEEEECCEEEEECCCCCCcccce-------EEEEeCCCCCEeeCCC
Confidence            6432 2368899999999999999999999999999999999999999875433333       3344688999999999


Q ss_pred             CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcC-CCCCCCCCcceEEEEE
Q 016877          262 IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP-SMPKPDSHIEFAWVLV  339 (381)
Q Consensus       262 ~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~-~~~~~~~~~~~~~~~~  339 (381)
                      +|..|..++++.++++||++||.+...                 ..++++.|| ++++|+.++ .+|.+|..+  +++++
T Consensus       238 ~~~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~~r~~~--~~~~~  298 (302)
T 2xn4_A          238 MNMCRRNAGVCAVNGLLYVVGGDDGSC-----------------NLASVEYYNPTTDKWTVVSSCMSTGRSYA--GVTVI  298 (302)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECSSCCSSCCBSC--EEEEE
T ss_pred             CCCccccCeEEEECCEEEEECCcCCCc-----------------ccccEEEEcCCCCeEEECCcccCcccccc--eEEEe
Confidence            999998889999999999999986432                 356799999 899999997 788887654  45777


Q ss_pred             CCEE
Q 016877          340 NNSI  343 (381)
Q Consensus       340 ~~~l  343 (381)
                      +++|
T Consensus       299 ~~~i  302 (302)
T 2xn4_A          299 DKRL  302 (302)
T ss_dssp             EC--
T ss_pred             cccC
Confidence            7765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=100.00  E-value=2.6e-41  Score=310.16  Aligned_cols=289  Identities=17%  Similarity=0.240  Sum_probs=233.9

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce-e--eecCCCCCCCceeEEeee-ccccccc---------ccCcceEeecCC
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS-I--ILPNNGPQKGENIGVKTK-KDVVPKR---------ILPATFQDLPAP   98 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~--~~p~~~~~~~~~~~~~~~-~~~~~~~---------~~~~~~~~~~~~   98 (381)
                      +++.||++||       +++++|||.+++ .  .+|.+.+|..++++..++ ++..++.         .....++.||+.
T Consensus         3 ~~~~l~~~GG-------~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~   75 (315)
T 4asc_A            3 LQDLIFMISE-------EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHL   75 (315)
T ss_dssp             CEEEEEEEET-------TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETT
T ss_pred             cceEEEEEcC-------CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCC
Confidence            5789999999       578999999999 3  333355788888876655 6665552         233458899999


Q ss_pred             CCCeEEccCCCCCCCCceEEEECCEEEEEecCC--CCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEE
Q 016877           99 ELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYG--SIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYV  176 (381)
Q Consensus        99 ~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv  176 (381)
                      +++|++++++|.+|..|+++.++++|||+||.+  ......+++++||+.+++|+.++++|.  +|..|+++..+++||+
T Consensus        76 ~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv  153 (315)
T 4asc_A           76 DSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY--VVYGHTVLSHMDLVYV  153 (315)
T ss_dssp             TTEEEECCCBSSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEE
T ss_pred             CCeEEECCCCCcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC--cccceeEEEECCEEEE
Confidence            999999999999999999999999999999975  234567889999999999999999887  4788999999999999


Q ss_pred             EcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCce
Q 016877          177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEW  256 (381)
Q Consensus       177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W  256 (381)
                      +||.....  ..++++++||+.+++|+.++++|.+|..|++++++++|||+||.....       ....++.||+.+++|
T Consensus       154 ~GG~~~~~--~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~yd~~~~~W  224 (315)
T 4asc_A          154 IGGKGSDR--KCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVTDTG-------LTSSAEVYSITDNKW  224 (315)
T ss_dssp             ECCBCTTS--CBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEEEEECSSS-------EEEEEEEEETTTTEE
T ss_pred             EeCCCCCC--cccceEEEEeCCCCeEEECCCCCCchhceEEEEECCEEEEEeccCCCC-------ccceEEEEECCCCeE
Confidence            99984432  347999999999999999999999999999999999999999986542       223455667999999


Q ss_pred             EEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceE
Q 016877          257 RTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFA  335 (381)
Q Consensus       257 ~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~  335 (381)
                      +.++++|.+|..++++.++++||++||.+.....+        ........++++.|| ++++|+.+  ++.+|..+  +
T Consensus       225 ~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~--------~~~~~~~~~~v~~yd~~~~~W~~~--~~~~r~~~--~  292 (315)
T 4asc_A          225 APFEAFPQERSSLSLVSLVGTLYAIGGFATLETES--------GELVPTELNDIWRYNEEEKKWEGV--LREIAYAA--G  292 (315)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEEEEEEEEECTT--------SCEEEEEEEEEEEEETTTTEEEEE--ESCSSCCS--S
T ss_pred             EECCCCCCcccceeEEEECCEEEEECCccccCcCC--------ccccccccCcEEEecCCCChhhhh--ccCCcCcc--c
Confidence            99999999999999999999999999985321000        001113467899999 89999999  45556654  4


Q ss_pred             EEEECCEEEEEcccc
Q 016877          336 WVLVNNSIVIVGGTT  350 (381)
Q Consensus       336 ~~~~~~~l~v~GG~~  350 (381)
                      +++++++||++....
T Consensus       293 ~~~~~~~l~v~~~~~  307 (315)
T 4asc_A          293 ATFLPVRLNVLRLTK  307 (315)
T ss_dssp             CEEEEEEECGGGSEE
T ss_pred             eEEeCCEEEEEEehh
Confidence            588999999997643

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=100.00  E-value=8.1e-40  Score=299.26  Aligned_cols=242  Identities=18%  Similarity=0.247  Sum_probs=204.4

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l  105 (381)
                      .|+++++++.||++||.+....                                     .....+.++.||+.+++|+++
T Consensus        63 ~~~~~~~~~~lyv~GG~~~~~~-------------------------------------~~~~~~~~~~~d~~~~~W~~~  105 (308)
T 1zgk_A           63 GLAGCVVGGLLYAVGGRNNSPD-------------------------------------GNTDSSALDCYNPMTNQWSPC  105 (308)
T ss_dssp             SCEEEEETTEEEEECCEEEETT-------------------------------------EEEECCCEEEEETTTTEEEEC
T ss_pred             cceEEEECCEEEEECCCcCCCC-------------------------------------CCeecceEEEECCCCCeEeEC
Confidence            7889999999999999521000                                     001123678889899999999


Q ss_pred             cCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC
Q 016877          106 KAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC  185 (381)
Q Consensus       106 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~  185 (381)
                      +++|.+|..|+++.++++|||+||.+... .++++++||+.+++|+.++++|.  +|..+++++.+++||++||.++...
T Consensus       106 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~~~~~  182 (308)
T 1zgk_A          106 APMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGFDGTNR  182 (308)
T ss_dssp             CCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBCSSCB
T ss_pred             CCCCcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCCCCc--cccceEEEEECCEEEEEeCCCCCCc
Confidence            99999999999999999999999987543 45789999999999999999887  4788889999999999999876543


Q ss_pred             CCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCC
Q 016877          186 RGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG  265 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~  265 (381)
                         ++++++||+.+++|+.++++|.+|..|++++++++||++||........+       ++.||+.+++|+.++++|..
T Consensus       183 ---~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~-------v~~yd~~~~~W~~~~~~p~~  252 (308)
T 1zgk_A          183 ---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNS-------VERYDVETETWTFVAPMKHR  252 (308)
T ss_dssp             ---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCC-------EEEEETTTTEEEECCCCSSC
T ss_pred             ---CceEEEEeCCCCeEeeCCCCCCccccceEEEECCEEEEEeCCCCCCccce-------EEEEeCCCCcEEECCCCCCC
Confidence               78999999999999999999999999999999999999999875433333       33445889999999999999


Q ss_pred             CcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcce
Q 016877          266 GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (381)
Q Consensus       266 ~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~  334 (381)
                      |..++++.++++||++||.+...                 ..++++.|| ++++|+.++++|.+|..+++
T Consensus       253 r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~  305 (308)
T 1zgk_A          253 RSALGITVHQGRIYVLGGYDGHT-----------------FLDSVECYDPDTDTWSEVTRMTSGRSGVGV  305 (308)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSC-----------------BCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ccceEEEEECCEEEEEcCcCCCc-----------------ccceEEEEcCCCCEEeecCCCCCCccccee
Confidence            99999999999999999986432                 367899999 89999999999999877654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=100.00  E-value=8.4e-40  Score=298.77  Aligned_cols=274  Identities=16%  Similarity=0.197  Sum_probs=233.9

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEeee-cccccccc--cCcceEeecCCCCCeEEccC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTK-KDVVPKRI--LPATFQDLPAPELKWEKMKA  107 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~W~~l~~  107 (381)
                      .+.||++||.+.   ++++++||+.+++ ..+++ +.+|..+.++..++ ++..++..  ....++.||+.+++|+++++
T Consensus        11 ~~~l~~~GG~~~---~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           11 HDYRIALFGGSQ---PQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CCEEEEEECCSS---TTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             cceEEEEeCCCC---CceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            489999999665   7899999999999 77777 77888888887766 77776642  44578999999999999999


Q ss_pred             CCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCC-C
Q 016877          108 APVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQC-R  186 (381)
Q Consensus       108 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~-~  186 (381)
                      +|.+|..|+++.++++|||+||.+.....++++++||+.+++|+.++++|.+  |..|+++..+++||++||...... .
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~--r~~~~~~~~~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQ--RCSHGMVEANGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSC--CBSCEEEEETTEEEEECCEESCTTTC
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCC--cceeEEEEECCEEEEECCCCCCCCcc
Confidence            9999999999999999999999875555678899999999999999999874  788899999999999999866432 0


Q ss_pred             CCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCC
Q 016877          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG  266 (381)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~  266 (381)
                      ..++++++||+++++|+.++++|.+|..|++++++++||++||.+......       .++.||+.+++|+.++++|..+
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~-------~~~~yd~~~~~W~~~~~~p~~r  238 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLD-------NVEYYDIKLNEWKMVSPMPWKG  238 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBC-------CEEEEETTTTEEEECCCCSCCB
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCc-------eEEEeeCCCCcEEECCCCCCCc
Confidence            126899999999999999999999999999999999999999976542222       2444568999999999999999


Q ss_pred             cceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceE
Q 016877          267 PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFA  335 (381)
Q Consensus       267 ~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~  335 (381)
                      ..++++.++++||++||.+...                 ..++++.|| ++++|+.++++|.+|..++++
T Consensus       239 ~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  291 (306)
T 3ii7_A          239 VTVKCAAVGSIVYVLAGFQGVG-----------------RLGHILEYNTETDKWVANSKVRAFPVTSCLI  291 (306)
T ss_dssp             SCCEEEEETTEEEEEECBCSSS-----------------BCCEEEEEETTTTEEEEEEEEECCSCTTCEE
T ss_pred             cceeEEEECCEEEEEeCcCCCe-----------------eeeeEEEEcCCCCeEEeCCCcccccceeEEE
Confidence            9999999999999999986442                 356899999 899999999999888876653

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=100.00  E-value=4.5e-39  Score=293.19  Aligned_cols=239  Identities=19%  Similarity=0.280  Sum_probs=203.2

Q ss_pred             HHhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCC---
Q 016877           25 MILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELK---  101 (381)
Q Consensus        25 ~~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  101 (381)
                      ..|+++++++.||++||.++...++                                         .++.||+.+++   
T Consensus        54 ~~~~~~~~~~~l~v~GG~~~~~~~~-----------------------------------------~~~~~d~~~~~~~~   92 (301)
T 2vpj_A           54 RYVASVSLHDRIYVIGGYDGRSRLS-----------------------------------------SVECLDYTADEDGV   92 (301)
T ss_dssp             BSCEEEEETTEEEEECCBCSSCBCC-----------------------------------------CEEEEETTCCTTCC
T ss_pred             ccccEEEECCEEEEEcCCCCCccCc-----------------------------------------eEEEEECCCCCCCe
Confidence            4789999999999999966433322                                         56666777777   


Q ss_pred             eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCC
Q 016877          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (381)
Q Consensus       102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  181 (381)
                      |++++++|.+|..|+++.++++|||+||.+.... ++++++||+.+++|+.++++|.  +|..|+++..+++||++||.+
T Consensus        93 W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~-~~~~~~~d~~~~~W~~~~~~p~--~r~~~~~~~~~~~iyv~GG~~  169 (301)
T 2vpj_A           93 WYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRR-HTSMERYDPNIDQWSMLGDMQT--AREGAGLVVASGVIYCLGGYD  169 (301)
T ss_dssp             CEEECCCSSCCBSCEEEEETTEEEEECCBCSSCB-CCEEEEEETTTTEEEEEEECSS--CCBSCEEEEETTEEEEECCBC
T ss_pred             eEECCCCCCCccceeEEEECCEEEEEcccCCCcc-cceEEEEcCCCCeEEECCCCCC--CcccceEEEECCEEEEECCCC
Confidence            9999999999999999999999999999886543 5789999999999999998887  478888999999999999987


Q ss_pred             CCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecC
Q 016877          182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP  261 (381)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  261 (381)
                      +..   .++++++||+++++|+.++++|.+|..|++++++++||++||.+......+       ++.||+.+++|+.+++
T Consensus       170 ~~~---~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~-------v~~yd~~~~~W~~~~~  239 (301)
T 2vpj_A          170 GLN---ILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSS-------VEAYNIRTDSWTTVTS  239 (301)
T ss_dssp             SSC---BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCC-------EEEEETTTTEEEEECC
T ss_pred             CCc---ccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEeCCCCCcccce-------EEEEeCCCCcEEECCC
Confidence            653   478999999999999999999999999999999999999999876443333       3344588999999999


Q ss_pred             CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcce
Q 016877          262 IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (381)
Q Consensus       262 ~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~  334 (381)
                      +|..+..++++.++++||++||.+...                 ..++++.|| ++++|+.++++|.+|..+++
T Consensus       240 ~p~~r~~~~~~~~~~~i~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~  296 (301)
T 2vpj_A          240 MTTPRCYVGATVLRGRLYAIAGYDGNS-----------------LLSSIECYDPIIDSWEVVTSMGTQRCDAGV  296 (301)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSS-----------------BEEEEEEEETTTTEEEEEEEEEEEEESCEE
T ss_pred             CCCcccceeEEEECCEEEEEcCcCCCc-----------------ccccEEEEcCCCCeEEEcCCCCcccccceE
Confidence            999999999999999999999986432                 356799999 89999999999988776543

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=100.00  E-value=3.6e-38  Score=294.20  Aligned_cols=255  Identities=17%  Similarity=0.205  Sum_probs=196.2

Q ss_pred             EccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCC--CCeEecCCCCC-CCCccceEEEEEeCCEEEEEcCC
Q 016877          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFT--DNTWGGRFDMP-REMAHSHLGMVTDGRYIYVVTGQ  180 (381)
Q Consensus       104 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~~-~~~~r~~~~~~~~~~~iyv~GG~  180 (381)
                      .+++||.+|.++++++++++|||+||.+.     +++++||+.  +++|+.+++|| .  +|..|++++++++|||+||.
T Consensus         2 ~l~~lP~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~d~~~~~~~W~~~~~~p~~--~R~~~~~~~~~~~lyv~GG~   74 (357)
T 2uvk_A            2 VLPETPVPFKSGTGAIDNDTVYIGLGSAG-----TAWYKLDTQAKDKKWTALAAFPGG--PRDQATSAFIDGNLYVFGGI   74 (357)
T ss_dssp             CSCCCSSCCCSCEEEEETTEEEEECGGGT-----TCEEEEETTSSSCCEEECCCCTTC--CCBSCEEEEETTEEEEECCE
T ss_pred             CCCCCCccccceEEEEECCEEEEEeCcCC-----CeEEEEccccCCCCeeECCCCCCC--cCccceEEEECCEEEEEcCC
Confidence            57899999999999999999999999763     369999998  49999999998 5  48889999999999999998


Q ss_pred             -C-CCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEEEECCEEEEEccCCCCCCC----------CC---------
Q 016877          181 -Y-GPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQLWRGRLHVMGGSGENRYT----------PE---------  238 (381)
Q Consensus       181 -~-~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~lyv~GG~~~~~~~----------~~---------  238 (381)
                       + .......++++++||+.+++|+++++++ .+|..|++++++++|||+||.+...+.          +.         
T Consensus        75 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (357)
T 2uvk_A           75 GKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINA  154 (357)
T ss_dssp             EECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhh
Confidence             3 1111234789999999999999999988 999999999999999999998642100          00         


Q ss_pred             --------ccceEeeeecCCccCCceEEecCCCCCCcc-eeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCc
Q 016877          239 --------VDHWSLAVKDGKPLEKEWRTEIPIPRGGPH-RACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDD  309 (381)
Q Consensus       239 --------~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~-~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (381)
                              ...+...++.||+.+++|+.++++|..+.. ++++.++++||++||.....                ...++
T Consensus       155 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~----------------~~~~~  218 (357)
T 2uvk_A          155 HYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPG----------------LRTDA  218 (357)
T ss_dssp             HHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETT----------------EECCC
T ss_pred             hhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCC----------------cccCc
Confidence                    001223455667999999999988876544 78999999999999975321                13556


Q ss_pred             eeEe--C-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCC----------ceeeeeecceEEEEcCCCceE
Q 016877          310 VYML--D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPT----------TKKMVLVGEIFQFNLNTLVAV  376 (381)
Q Consensus       310 v~~y--d-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~----------~~~~~~~~~v~~yd~~~~~W~  376 (381)
                      ++.|  | .+++|+.+++++.++.++.+++++.+++|||+||.+.....          ......++++++||+++++|+
T Consensus       219 v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~  298 (357)
T 2uvk_A          219 VFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWD  298 (357)
T ss_dssp             EEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CE
T ss_pred             eEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCcee
Confidence            7666  4 68899999999888888888889999999999997643100          000002457999999999999


Q ss_pred             EeecC
Q 016877          377 LNAML  381 (381)
Q Consensus       377 ~i~~l  381 (381)
                      .++.|
T Consensus       299 ~~~~~  303 (357)
T 2uvk_A          299 KSGEL  303 (357)
T ss_dssp             EEEEC
T ss_pred             eCCCC
Confidence            98764

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=5.1e-36  Score=302.00  Aligned_cols=274  Identities=12%  Similarity=0.080  Sum_probs=208.1

Q ss_pred             HhhheeEcCEEEEecCCCCCcccceeeeeeCCCceeeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEc
Q 016877           26 ILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSIILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKM  105 (381)
Q Consensus        26 ~~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l  105 (381)
                      +++++++++.||++||.++ ..+                                         +.++.||+.+++|+++
T Consensus       390 ~g~~~~~~~~iyv~GG~~~-~~~-----------------------------------------~~v~~yd~~~~~W~~~  427 (695)
T 2zwa_A          390 FGDVDVAGNDVFYMGGSNP-YRV-----------------------------------------NEILQLSIHYDKIDMK  427 (695)
T ss_dssp             SCEEEECSSCEEEECCBSS-SBC-----------------------------------------CCEEEEEECSSCEEEE
T ss_pred             eeEEEEECCEEEEECCCCC-CCc-----------------------------------------CcEEEEECCCCeEEEe
Confidence            4555668999999999554 332                                         2466777788889888


Q ss_pred             c-C-----CCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEE
Q 016877          106 K-A-----APVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYV  176 (381)
Q Consensus       106 ~-~-----~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv  176 (381)
                      + +     +|.+|..|+++.+  +++|||+||.+.....++++|+||+.+++|+.++++|.  +|..|+++++ +++|||
T Consensus       428 ~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~--~R~~h~~~~~~~~~iyv  505 (695)
T 2zwa_A          428 NIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSH--TRFRHSACSLPDGNVLI  505 (695)
T ss_dssp             ECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSB--CCBSCEEEECTTSCEEE
T ss_pred             ccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCC--CcccceEEEEcCCEEEE
Confidence            7 5     8999999999999  99999999998766567889999999999999999987  4788888886 999999


Q ss_pred             EcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEEEC---CEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQLWR---GRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      +||.+...      ++++||+.+++|+.+++   +|.+|..|++++++   ++|||+||.......     ....++.||
T Consensus       506 ~GG~~~~~------~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~-----~~~~v~~yd  574 (695)
T 2zwa_A          506 LGGVTEGP------AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTT-----VSDKAIIFK  574 (695)
T ss_dssp             ECCBCSSC------SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSC-----BCCEEEEEE
T ss_pred             ECCCCCCC------CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCe-----eeCcEEEEE
Confidence            99987633      79999999999999986   89999999988877   899999998543211     112234445


Q ss_pred             ccCCc------eEEecCC-CCCCcceeEEEeC-CEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEE
Q 016877          251 PLEKE------WRTEIPI-PRGGPHRACVVVD-DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV  321 (381)
Q Consensus       251 ~~~~~------W~~~~~~-p~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~  321 (381)
                      +.+++      |+.+.++ +.+|..++++.++ ++||++||.+....              ....++++.|| .+++|+.
T Consensus       575 ~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~--------------~~~~~~v~~yd~~t~~W~~  640 (695)
T 2zwa_A          575 YDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGL--------------FDRTNSIISLDPLSETLTS  640 (695)
T ss_dssp             ECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCC--------------CCTTTSEEEEETTTTEEEE
T ss_pred             ccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCC--------------CCCCCeEEEEECCCCeEEE
Confidence            77888      8888665 4677778899998 99999999864321              11367899999 8999996


Q ss_pred             cCCCCCC------CCCcceEEEEECC-EEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877          322 LPSMPKP------DSHIEFAWVLVNN-SIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       322 i~~~~~~------~~~~~~~~~~~~~-~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                      ++ +|..      ..+.+++++.+++ +|||+||....-.   .+.+.+++|.+|+..
T Consensus       641 ~~-~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg~~cfs---fGt~~n~i~~ldl~~  694 (695)
T 2zwa_A          641 IP-ISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGGATCYG---FGSVTNVGLKLIAIA  694 (695)
T ss_dssp             CC-CCHHHHHHSCCCCSSCEEECC---CEEEECCEEECTT---SCEEECCCEEEEECC
T ss_pred             ee-ccccccCCCCccceeeeEEEeCCCEEEEEeCCccCcC---ccccccceEEEEEEc
Confidence            53 2211      1234455566665 9999999653211   112567899998764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=2.3e-34  Score=289.34  Aligned_cols=324  Identities=13%  Similarity=0.073  Sum_probs=228.5

Q ss_pred             hhheeE--cCEEEEecCCCCCc------ccceeeeeeCCCce-eeecC-CCCCCCce--eEEe--eecccccccccCcce
Q 016877           27 LGFALV--ADFFWASSSKFTSS------YLNIASNWSPYHNS-IILPN-NGPQKGEN--IGVK--TKKDVVPKRILPATF   92 (381)
Q Consensus        27 ~~~~~~--~~~ly~~GG~~~~~------~~~~~~~~d~~~~~-~~~p~-~~~~~~~~--~~~~--~~~~~~~~~~~~~~~   92 (381)
                      |+++++  +++||++||.+...      .++.+++||+.+++ ..++. ..+|..++  .+..  +.++..++.... .+
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~-~v  267 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAK-KT  267 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTT-CE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCC-ce
Confidence            445555  99999999965321      34579999999999 55555 44454443  4433  337777775433 79


Q ss_pred             EeecCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCC-----CCCCCCccceEE
Q 016877           93 QDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-----DMPREMAHSHLG  166 (381)
Q Consensus        93 ~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-----~~~~~~~r~~~~  166 (381)
                      ++||+.+++|+++++||.+|..|+++.+ +++|||+||........+++++||+.+++|+.++     +|+.  .|. ++
T Consensus       268 ~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~--~~~-~~  344 (656)
T 1k3i_A          268 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLT--ADK-QG  344 (656)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCC--CCT-TG
T ss_pred             EEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccc--ccc-cc
Confidence            9999999999999999999999999999 9999999995444445678999999999999974     3333  233 35


Q ss_pred             EEEeCCEEEEEcCCCCCCC-CCCcceEEEEECCCCcEEeCCC-CCC------CCcccEEEE---ECCEEEEEccCCCCCC
Q 016877          167 MVTDGRYIYVVTGQYGPQC-RGPTAHTFVLDTETKKWQDLPP-LPV------PRYAPATQL---WRGRLHVMGGSGENRY  235 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~-~~~~~~~~~yd~~~~~W~~~~~-~p~------~r~~~~~~~---~~~~lyv~GG~~~~~~  235 (381)
                      ++..++++|++||.++... ....++++.||+++++|..... .+.      ++..++++.   .+++||++||......
T Consensus       345 ~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~  424 (656)
T 1k3i_A          345 LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQD  424 (656)
T ss_dssp             GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSS
T ss_pred             eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCC
Confidence            5568899999999865311 1236889999999999875432 211      233444443   4899999999653110


Q ss_pred             C-CCccceEeeeecCCccCCceEEec--CCCCCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCcee
Q 016877          236 T-PEVDHWSLAVKDGKPLEKEWRTEI--PIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY  311 (381)
Q Consensus       236 ~-~~~~~~~~~~~~~~~~~~~W~~~~--~~p~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (381)
                      . ....+.  .++.||+.+++|+.+.  +||.+|..++++.+ +++||++||.+....           ........+++
T Consensus       425 ~~~~~~~~--~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~-----------~~~~~~~~~v~  491 (656)
T 1k3i_A          425 SDATTNAH--IITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-----------FEDSTPVFTPE  491 (656)
T ss_dssp             SBCCCCEE--EEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-----------TCCCSBCCCCE
T ss_pred             CCcCCcce--EEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcC-----------cCCCCcccceE
Confidence            1 111111  3556789999999986  89999988888887 999999999763210           00112356789


Q ss_pred             EeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcC
Q 016877          312 MLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLN  371 (381)
Q Consensus       312 ~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~  371 (381)
                      .|| .+++|+.+++++.+|..|++++...+++||++||........    ..-++++|.|.
T Consensus       492 ~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~~~~~~~~----~~~~~e~~~Pp  548 (656)
T 1k3i_A          492 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT----NHFDAQIFTPN  548 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSC----CCCEEEEEECG
T ss_pred             EEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCCCCCCCCC----CeeEEEEEeCh
Confidence            999 899999999999999887654333499999999963321100    12356777763

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=100.00  E-value=3.7e-34  Score=288.44  Aligned_cols=242  Identities=14%  Similarity=0.160  Sum_probs=191.8

Q ss_pred             CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCC-CCC---CCCccceEEEEEe--CCEE
Q 016877          101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-DMP---REMAHSHLGMVTD--GRYI  174 (381)
Q Consensus       101 ~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~---~~~~r~~~~~~~~--~~~i  174 (381)
                      +|...+..|.+|.++ +++++++|||+||.+.  ...+++++||+.+++|+.++ ++|   .|.+|..|+++++  +++|
T Consensus       378 ~~~~~~~~p~rr~g~-~~~~~~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l  454 (695)
T 2zwa_A          378 QLLECECPINRKFGD-VDVAGNDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL  454 (695)
T ss_dssp             EEEECCCTTCCBSCE-EEECSSCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred             eEeccCCCCCCceeE-EEEECCEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence            344445555555554 4558999999999876  45678999999999999998 643   3446889999999  9999


Q ss_pred             EEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccC
Q 016877          175 YVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLE  253 (381)
Q Consensus       175 yv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~  253 (381)
                      ||+||.+....  .++++|+||+.+++|+.++++|.+|..|+++++ +++|||+||.+...          .++.||+.+
T Consensus       455 yv~GG~~~~~~--~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~----------~v~~yd~~t  522 (695)
T 2zwa_A          455 LLIGGRKAPHQ--GLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP----------AMLLYNVTE  522 (695)
T ss_dssp             EEECCBSSTTC--BCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC----------SEEEEETTT
T ss_pred             EEEcCCCCCCC--ccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC----------CEEEEECCC
Confidence            99999876542  478999999999999999999999999999996 99999999986543          344556999


Q ss_pred             CceEEecC---CCCCCcceeEEEeC---CEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCC------eE
Q 016877          254 KEWRTEIP---IPRGGPHRACVVVD---DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMK------WK  320 (381)
Q Consensus       254 ~~W~~~~~---~p~~~~~~~~~~~~---~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~------W~  320 (381)
                      ++|+.+++   +|.+|..+++++++   ++||++||.....               ....++++.|| .+++      |+
T Consensus       523 ~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~---------------~~~~~~v~~yd~~~~~w~~~~~W~  587 (695)
T 2zwa_A          523 EIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQ---------------TTVSDKAIIFKYDAENATEPITVI  587 (695)
T ss_dssp             TEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTS---------------SCBCCEEEEEEECTTCSSCCEEEE
T ss_pred             CceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCC---------------CeeeCcEEEEEccCCccccceEEE
Confidence            99999876   78888888877776   8999999985431               11467899999 8888      89


Q ss_pred             EcCCC-CCCCCCcceEEEEEC-CEEEEEcccccccCCceeeeeecceEEEEcCCCceEEe
Q 016877          321 VLPSM-PKPDSHIEFAWVLVN-NSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLN  378 (381)
Q Consensus       321 ~i~~~-~~~~~~~~~~~~~~~-~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i  378 (381)
                      .+.++ +.+|..  +++++++ ++|||+||.+.....    ...+++++||+++++|+.+
T Consensus       588 ~~~~~p~~~R~~--~~~~~~~~~~iyv~GG~~~~~~~----~~~~~v~~yd~~t~~W~~~  641 (695)
T 2zwa_A          588 KKLQHPLFQRYG--SQIKYITPRKLLIVGGTSPSGLF----DRTNSIISLDPLSETLTSI  641 (695)
T ss_dssp             EEEECGGGCCBS--CEEEEEETTEEEEECCBCSSCCC----CTTTSEEEEETTTTEEEEC
T ss_pred             EcCCCCCCCccc--ceEEEeCCCEEEEECCccCCCCC----CCCCeEEEEECCCCeEEEe
Confidence            88775 355554  5567888 999999998754311    1357899999999999854

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=100.00  E-value=1.4e-32  Score=276.36  Aligned_cols=303  Identities=11%  Similarity=0.002  Sum_probs=208.5

Q ss_pred             eeeeeCCCce-eeecCCCCCCCceeEEe--ee-cccccccc---------cCcceEeecCCCCCeEEccCCCCCCCCce-
Q 016877           51 ASNWSPYHNS-IILPNNGPQKGENIGVK--TK-KDVVPKRI---------LPATFQDLPAPELKWEKMKAAPVPRLDGA-  116 (381)
Q Consensus        51 ~~~~d~~~~~-~~~p~~~~~~~~~~~~~--~~-~~~~~~~~---------~~~~~~~~~~~~~~W~~l~~~p~~r~~~~-  116 (381)
                      ++.|||.+++ ..+++ .|+..+..++.  ++ ++..++..         ....++.||+.+++|++++++|.+|..++ 
T Consensus       168 ~~~~dp~~~~W~~~~~-~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~  246 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTID-LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCP  246 (656)
T ss_dssp             CCCCCTTSCEEEEEEE-CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSC
T ss_pred             cccCCCCCCeeeeecc-CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccc
Confidence            6788999998 55544 24444455544  23 55554321         12368899999999999999998887654 


Q ss_pred             -EE-EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEE
Q 016877          117 -AI-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTF  193 (381)
Q Consensus       117 -~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~  193 (381)
                       ++ ..+++||++||.+..     ++++||+.+++|+++++|+.  +|..|+++++ +++||++||.....  ...++++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~~~~--~R~~~s~~~~~dg~iyv~GG~~~~~--~~~~~~e  317 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPDMQV--ARGYQSSATMSDGRVFTIGGSWSGG--VFEKNGE  317 (656)
T ss_dssp             EEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCCCSS--CCSSCEEEECTTSCEEEECCCCCSS--SCCCCEE
T ss_pred             cccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCCCCc--cccccceEEecCCeEEEEeCcccCC--cccccce
Confidence             33 358999999997642     69999999999999999987  4788888888 99999999953322  1378899


Q ss_pred             EEECCCCcEEeC-----CCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCC----
Q 016877          194 VLDTETKKWQDL-----PPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR----  264 (381)
Q Consensus       194 ~yd~~~~~W~~~-----~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~----  264 (381)
                      +||+++++|+.+     .+++..|.. +++..++++|++||.++..+...   ....++.||+.+++|......+.    
T Consensus       318 ~yd~~t~~W~~~~~~~~~p~~~~~~~-~~~~~~~~iyv~Gg~~g~~~~~~---~~~~v~~yd~~~~~w~~~~~~~~~~~~  393 (656)
T 1k3i_A          318 VYSPSSKTWTSLPNAKVNPMLTADKQ-GLYRSDNHAWLFGWKKGSVFQAG---PSTAMNWYYTSGSGDVKSAGKRQSNRG  393 (656)
T ss_dssp             EEETTTTEEEEETTSCSGGGCCCCTT-GGGTTTCSCCEEECGGGCEEECC---SSSEEEEEECSTTCEEEEEEECEETTE
T ss_pred             EeCCCCCcceeCCCcccccccccccc-ceeecCCceEEEECCCCcEEEec---CccceeeeecCCcceeecCCccccccc
Confidence            999999999997     456666553 55568999999999765321100   01134455688999876433221    


Q ss_pred             ---CCcceeEEE---eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcC--CCCCCCCCcceE
Q 016877          265 ---GGPHRACVV---VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLP--SMPKPDSHIEFA  335 (381)
Q Consensus       265 ---~~~~~~~~~---~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~--~~~~~~~~~~~~  335 (381)
                         .+..++++.   .+++||++||........       ...    ...+++.|| .+++|+.+.  .||.+|..+  +
T Consensus       394 ~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~-------~~~----~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~--~  460 (656)
T 1k3i_A          394 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD-------ATT----NAHIITLGEPGTSPNTVFASNGLYFARTFH--T  460 (656)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB-------CCC----CEEEEECCSTTSCCEEEECTTCCSSCCBSC--E
T ss_pred             cCCCCCCCceEeccCCCCeEEEEeCCCCCCCCC-------cCC----cceEEEcCCCCCCCeeEEccCCCCCCcccC--C
Confidence               122234443   589999999975321100       000    112588899 899999986  788887654  4


Q ss_pred             EEEE-CCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          336 WVLV-NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       336 ~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      ++++ +++|||+||.+...... ......++++||+++++|+.++.|
T Consensus       461 ~~~l~~g~i~v~GG~~~~~~~~-~~~~~~~v~~ydp~t~~W~~~~~~  506 (656)
T 1k3i_A          461 SVVLPDGSTFITGGQRRGIPFE-DSTPVFTPEIYVPEQDTFYKQNPN  506 (656)
T ss_dssp             EEECTTSCEEEECCBSBCCTTC-CCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             eEECCCCCEEEECCcccCcCcC-CCCcccceEEEcCCCCceeecCCC
Confidence            4555 99999999976321100 001456899999999999988754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.92  E-value=0.013  Score=53.67  Aligned_cols=263  Identities=14%  Similarity=0.161  Sum_probs=136.1

Q ss_pred             hheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCC-------CCCc--eeEEeee-cccccccccCcceEee
Q 016877           28 GFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGP-------QKGE--NIGVKTK-KDVVPKRILPATFQDL   95 (381)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~-------~~~~--~~~~~~~-~~~~~~~~~~~~~~~~   95 (381)
                      .-++.++.||+...      .+.+.+||+++++  ........       ....  .....++ ++....   ...++.+
T Consensus        48 ~p~v~~~~v~~~~~------~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---~g~l~a~  118 (376)
T 3q7m_A           48 HPALADNVVYAADR------AGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---KAQVYAL  118 (376)
T ss_dssp             CCEEETTEEEEECT------TSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET---TSEEEEE
T ss_pred             ccEEECCEEEEEcC------CCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC---CCEEEEE
Confidence            56778999999863      1378999999888  33322110       1111  1112222 333221   2468899


Q ss_pred             cCCCC--CeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEeC
Q 016877           96 PAPEL--KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDG  171 (381)
Q Consensus        96 ~~~~~--~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~  171 (381)
                      |..+.  .|+.-.+  .. .....+..++.+|+...       ...+.+||+.+.+  |+.-...+....+...+.+..+
T Consensus       119 d~~tG~~~W~~~~~--~~-~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~  188 (376)
T 3q7m_A          119 NTSDGTVAWQTKVA--GE-ALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAF  188 (376)
T ss_dssp             ETTTCCEEEEEECS--SC-CCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEET
T ss_pred             ECCCCCEEEEEeCC--Cc-eEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEEC
Confidence            98766  5765322  11 12223455788887543       1358999998775  8764332221012223445567


Q ss_pred             CEEEEEcCCCCCCCCCCcceEEEEECCCC--cEEeCCCCCCCC--------cccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPR--------YAPATQLWRGRLHVMGGSGENRYTPEVDH  241 (381)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r--------~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  241 (381)
                      +.+|+ |..        ...+..+|+++.  .|+.-...|...        .....++.++.+|+.+. .     .....
T Consensus       189 ~~v~~-g~~--------~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~-~-----g~l~~  253 (376)
T 3q7m_A          189 GAAVV-GGD--------NGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAY-N-----GNLTA  253 (376)
T ss_dssp             TEEEE-CCT--------TTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECT-T-----SCEEE
T ss_pred             CEEEE-EcC--------CCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEec-C-----cEEEE
Confidence            87776 321        245889998765  476543322111        22333456888888742 1     11222


Q ss_pred             eEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CC--CC
Q 016877          242 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DE--MK  318 (381)
Q Consensus       242 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~--~~  318 (381)
                      ++.     ...+..|+....    . ....+..+++||+....                       ..++.+| .+  ..
T Consensus       254 ~d~-----~tG~~~w~~~~~----~-~~~~~~~~~~l~~~~~~-----------------------g~l~~~d~~tG~~~  300 (376)
T 3q7m_A          254 LDL-----RSGQIMWKRELG----S-VNDFIVDGNRIYLVDQN-----------------------DRVMALTIDGGVTL  300 (376)
T ss_dssp             EET-----TTCCEEEEECCC----C-EEEEEEETTEEEEEETT-----------------------CCEEEEETTTCCEE
T ss_pred             EEC-----CCCcEEeeccCC----C-CCCceEECCEEEEEcCC-----------------------CeEEEEECCCCcEE
Confidence            221     122335765321    1 22456678888886532                       1378887 43  45


Q ss_pred             eEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          319 WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       319 W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                      |+.-. +... ..  .+.++.++.||+.....             .+++||+++++
T Consensus       301 w~~~~-~~~~-~~--~~~~~~~~~l~v~~~~g-------------~l~~~d~~tG~  339 (376)
T 3q7m_A          301 WTQSD-LLHR-LL--TSPVLYNGNLVVGDSEG-------------YLHWINVEDGR  339 (376)
T ss_dssp             EEECT-TTTS-CC--CCCEEETTEEEEECTTS-------------EEEEEETTTCC
T ss_pred             Eeecc-cCCC-cc--cCCEEECCEEEEEeCCC-------------eEEEEECCCCc
Confidence            87631 1111 11  22356788888864311             36777777665

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.75  E-value=0.0032  Score=56.85  Aligned_cols=185  Identities=9%  Similarity=-0.004  Sum_probs=101.1

Q ss_pred             hhheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEE-e-eecccccccccCcceEeecCCCCCe
Q 016877           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGV-K-TKKDVVPKRILPATFQDLPAPELKW  102 (381)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~W  102 (381)
                      +++++.++++|+....     -+.+..+|+.+.+  ..++..  ....+++. - +..+....  ....+..+|+.+.+-
T Consensus        47 ~~i~~~~~~lyv~~~~-----~~~v~viD~~t~~~~~~i~~~--~~p~~i~~~~~g~lyv~~~--~~~~v~~iD~~t~~~  117 (328)
T 3dsm_A           47 QSMVIRDGIGWIVVNN-----SHVIFAIDINTFKEVGRITGF--TSPRYIHFLSDEKAYVTQI--WDYRIFIINPKTYEI  117 (328)
T ss_dssp             EEEEEETTEEEEEEGG-----GTEEEEEETTTCCEEEEEECC--SSEEEEEEEETTEEEEEEB--SCSEEEEEETTTTEE
T ss_pred             eEEEEECCEEEEEEcC-----CCEEEEEECcccEEEEEcCCC--CCCcEEEEeCCCeEEEEEC--CCCeEEEEECCCCeE
Confidence            4566779999999752     2478999999988  445431  11222332 1 22333321  245788999988764


Q ss_pred             EEccCCCCC----CCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEc
Q 016877          103 EKMKAAPVP----RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVT  178 (381)
Q Consensus       103 ~~l~~~p~~----r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~G  178 (381)
                      ...-++...    ..-..++..++++||..-.     ..+.+.++|+.+++....-+...   .-......-++++|+..
T Consensus       118 ~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g~---~p~~i~~~~dG~l~v~~  189 (328)
T 3dsm_A          118 TGYIECPDMDMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIGI---QPTSLVMDKYNKMWTIT  189 (328)
T ss_dssp             EEEEECTTCCTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEECSS---CBCCCEECTTSEEEEEB
T ss_pred             EEEEEcCCccccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEcCC---CccceEEcCCCCEEEEE
Confidence            322122110    0222344478899998520     12469999999987654222211   11122223468888875


Q ss_pred             CCCCCC--CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE--CCEEEEEc
Q 016877          179 GQYGPQ--CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMG  228 (381)
Q Consensus       179 G~~~~~--~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~G  228 (381)
                      ......  .....+.++++|+++.+....-.++....-..+++.  ++.+|+..
T Consensus       190 ~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~  243 (328)
T 3dsm_A          190 DGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWIN  243 (328)
T ss_dssp             CCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEES
T ss_pred             CCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEc
Confidence            322110  000136799999999876543234333233444554  56788873

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=97.52  E-value=0.047  Score=48.98  Aligned_cols=267  Identities=13%  Similarity=0.114  Sum_probs=133.9

Q ss_pred             cceeeeeeCCCce-ee-ecC-----CCCCCCceeEEeee-cccccccccCcceEeecCCCCCe-EEccCCCCCCCCceEE
Q 016877           48 LNIASNWSPYHNS-II-LPN-----NGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKW-EKMKAAPVPRLDGAAI  118 (381)
Q Consensus        48 ~~~~~~~d~~~~~-~~-~p~-----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W-~~l~~~p~~r~~~~~~  118 (381)
                      -+.+..+|+++++ .. +..     .......++...++ .+....  .+..+..+|+.+.+- ..++....|   ..++
T Consensus        16 ~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~--~~~~v~viD~~t~~~~~~i~~~~~p---~~i~   90 (328)
T 3dsm_A           16 NATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVN--NSHVIFAIDINTFKEVGRITGFTSP---RYIH   90 (328)
T ss_dssp             CBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEG--GGTEEEEEETTTCCEEEEEECCSSE---EEEE
T ss_pred             CceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEc--CCCEEEEEECcccEEEEEcCCCCCC---cEEE
Confidence            4688999999988 22 211     11111223333222 333322  245788899988765 334322222   2333


Q ss_pred             E-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCC--CccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE
Q 016877          119 Q-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPRE--MAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL  195 (381)
Q Consensus       119 ~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y  195 (381)
                      . -++++||....      ...+.++|+.+.+-...-+....  .......++..++++|+..-  +     ..+.+.++
T Consensus        91 ~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~--~-----~~~~v~vi  157 (328)
T 3dsm_A           91 FLSDEKAYVTQIW------DYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQYGKYVYVNCW--S-----YQNRILKI  157 (328)
T ss_dssp             EEETTEEEEEEBS------CSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEEETTEEEEEEC--T-----TCCEEEEE
T ss_pred             EeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEcCCccccCCCcceEEEECCEEEEEcC--C-----CCCEEEEE
Confidence            3 67899998743      24689999998875431111110  00022234558999999841  0     13579999


Q ss_pred             ECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCC--CCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEE
Q 016877          196 DTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGEN--RYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACV  272 (381)
Q Consensus       196 d~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~--~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~  272 (381)
                      |+++.+....-+..  ..-+.++. -++++|+.......  .+...    .-.++.+|+.+.+......++.......++
T Consensus       158 D~~t~~~~~~i~~g--~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~----~~~v~~id~~t~~v~~~~~~~~g~~p~~la  231 (328)
T 3dsm_A          158 DTETDKVVDELTIG--IQPTSLVMDKYNKMWTITDGGYEGSPYGYE----APSLYRIDAETFTVEKQFKFKLGDWPSEVQ  231 (328)
T ss_dssp             ETTTTEEEEEEECS--SCBCCCEECTTSEEEEEBCCBCTTCSSCBC----CCEEEEEETTTTEEEEEEECCTTCCCEEEE
T ss_pred             ECCCCeEEEEEEcC--CCccceEEcCCCCEEEEECCCccCCccccC----CceEEEEECCCCeEEEEEecCCCCCceeEE
Confidence            99998764422111  11122232 36888887532210  01000    011223346666655433344332223444


Q ss_pred             Ee--CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEE--ECCEEEEEc
Q 016877          273 VV--DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL--VNNSIVIVG  347 (381)
Q Consensus       273 ~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~--~~~~l~v~G  347 (381)
                      ..  ++.||+..+                         .++.+| .+.+.......+.. .....++++  .++.||+..
T Consensus       232 ~~~d~~~lyv~~~-------------------------~v~~~d~~t~~~~~~~~~~~~-~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          232 LNGTRDTLYWINN-------------------------DIWRMPVEADRVPVRPFLEFR-DTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             ECTTSCEEEEESS-------------------------SEEEEETTCSSCCSSCSBCCC-SSCEEEEEECTTTCCEEEEE
T ss_pred             EecCCCEEEEEcc-------------------------EEEEEECCCCceeeeeeecCC-CCceEEEEEcCCCCeEEEEc
Confidence            44  567888654                         278888 55543221111211 111223344  268899986


Q ss_pred             ccccccCCceeeeeecceEEEEcCC
Q 016877          348 GTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       348 G~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                      ..+-.        ..+.|.+||++.
T Consensus       286 ~~~y~--------~~~~V~v~d~~g  302 (328)
T 3dsm_A          286 AIDYQ--------QQGIVYRYSPQG  302 (328)
T ss_dssp             CTTSS--------SEEEEEEECTTC
T ss_pred             ccccc--------cCCEEEEECCCC
Confidence            21100        013589999873

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.50  E-value=0.023  Score=48.69  Aligned_cols=109  Identities=18%  Similarity=0.112  Sum_probs=74.9

Q ss_pred             ccCCCCCCCC--ceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCC
Q 016877          105 MKAAPVPRLD--GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYG  182 (381)
Q Consensus       105 l~~~p~~r~~--~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~  182 (381)
                      +...|.....  +++...++.+|+..|..+.    +.+.++|+++++=...-+++.  .-+..+++..+++||+....  
T Consensus        12 ~~~~phd~~~ftqGL~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~--~~fgeGi~~~~~~ly~ltw~--   83 (243)
T 3mbr_X           12 VKRYPHDTTAFTEGLFYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPP--PYFGAGIVAWRDRLIQLTWR--   83 (243)
T ss_dssp             EEEEECCTTCCEEEEEEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCT--TCCEEEEEEETTEEEEEESS--
T ss_pred             EEEcCCCCccccccEEEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCC--CcceeEEEEeCCEEEEEEee--
Confidence            3334444444  3667778999999997653    358899999998766545554  23567788899999998542  


Q ss_pred             CCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEcc
Q 016877          183 PQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG  229 (381)
Q Consensus       183 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG  229 (381)
                            .+.+++||+++.+-  +...+.+..+.+++.-+++||+.-|
T Consensus        84 ------~~~v~v~D~~tl~~--~~ti~~~~~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           84 ------NHEGFVYDLATLTP--RARFRYPGEGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             ------SSEEEEEETTTTEE--EEEEECSSCCCEEEECSSCEEEECS
T ss_pred             ------CCEEEEEECCcCcE--EEEEeCCCCceEEeeCCCEEEEECC
Confidence                  46799999988653  3333334456677766778888854

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.45  E-value=0.026  Score=52.81  Aligned_cols=263  Identities=12%  Similarity=0.043  Sum_probs=124.5

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~  110 (381)
                      ++...+.|+.++     .+..||..+.+  ..+.. +...-..+...+.....+  .....+..+|..+.+-.  ..+..
T Consensus       128 ~g~~l~sg~~dg-----~i~vwd~~~~~~~~~~~~-h~~~v~~~~~~~~~l~s~--~~dg~i~vwd~~~~~~~--~~~~~  197 (445)
T 2ovr_B          128 CGNRIVSGSDDN-----TLKVWSAVTGKCLRTLVG-HTGGVWSSQMRDNIIISG--STDRTLKVWNAETGECI--HTLYG  197 (445)
T ss_dssp             ETTEEEEEETTS-----CEEEEETTTCCEEEECCC-CSSCEEEEEEETTEEEEE--ETTSCEEEEETTTTEEE--EEECC
T ss_pred             cCCEEEEEECCC-----cEEEEECCCCcEEEEEcC-CCCCEEEEEecCCEEEEE--eCCCeEEEEECCcCcEE--EEECC
Confidence            455666676555     67889998877  33332 111111111111111111  12345677777665432  22222


Q ss_pred             CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcc
Q 016877          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTA  190 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~  190 (381)
                      ......+...++..++.|+.+      ..+.+||..+.+-...-....    .....+..++..++.|+.++        
T Consensus       198 h~~~v~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~~~----~~v~~~~~~~~~l~~~~~dg--------  259 (445)
T 2ovr_B          198 HTSTVRCMHLHEKRVVSGSRD------ATLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYDF--------  259 (445)
T ss_dssp             CSSCEEEEEEETTEEEEEETT------SEEEEEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETTS--------
T ss_pred             CCCcEEEEEecCCEEEEEeCC------CEEEEEECCCCcEEEEEcCCc----ccEEEEEECCCEEEEEcCCC--------
Confidence            222233344455556677654      357888888765332111111    11222333666677776443        


Q ss_pred             eEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCccee
Q 016877          191 HTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRA  270 (381)
Q Consensus       191 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~  270 (381)
                      .+..||+.+.+-..  .+............++..++.|+.++     .+..|++       .+.+-  +..+........
T Consensus       260 ~i~iwd~~~~~~~~--~~~~~~~~v~~~~~~~~~l~~~~~d~-----~i~i~d~-------~~~~~--~~~~~~~~~~v~  323 (445)
T 2ovr_B          260 MVKVWDPETETCLH--TLQGHTNRVYSLQFDGIHVVSGSLDT-----SIRVWDV-------ETGNC--IHTLTGHQSLTS  323 (445)
T ss_dssp             CEEEEEGGGTEEEE--EECCCSSCEEEEEECSSEEEEEETTS-----CEEEEET-------TTCCE--EEEECCCCSCEE
T ss_pred             EEEEEECCCCcEeE--EecCCCCceEEEEECCCEEEEEeCCC-----eEEEEEC-------CCCCE--EEEEcCCcccEE
Confidence            37788887654322  12211111222334777777777543     3555553       22221  111111111223


Q ss_pred             EEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCe-EEcCCCCCCCCCcceEEEEECCEEEEEcc
Q 016877          271 CVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW-KVLPSMPKPDSHIEFAWVLVNNSIVIVGG  348 (381)
Q Consensus       271 ~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-~~i~~~~~~~~~~~~~~~~~~~~l~v~GG  348 (381)
                      +...++++++.|+.++.                      +..|| .+.+- ..+.. +.... .....+..++.+++.|+
T Consensus       324 ~~~~~~~~l~~~~~dg~----------------------i~vwd~~~~~~~~~~~~-~~~~~-~~v~~~~~~~~~l~s~~  379 (445)
T 2ovr_B          324 GMELKDNILVSGNADST----------------------VKIWDIKTGQCLQTLQG-PNKHQ-SAVTCLQFNKNFVITSS  379 (445)
T ss_dssp             EEEEETTEEEEEETTSC----------------------EEEEETTTCCEEEEECS-TTSCS-SCEEEEEECSSEEEEEE
T ss_pred             EEEEeCCEEEEEeCCCe----------------------EEEEECCCCcEEEEEcc-CCCCC-CCEEEEEECCCEEEEEe
Confidence            44456667777776543                      66666 43321 22211 11111 12334566778888887


Q ss_pred             cccccCCceeeeeecceEEEEcCCCce
Q 016877          349 TTEKHPTTKKMVLVGEIFQFNLNTLVA  375 (381)
Q Consensus       349 ~~~~~~~~~~~~~~~~v~~yd~~~~~W  375 (381)
                      .++            .+.+||+++++.
T Consensus       380 ~dg------------~v~iwd~~~~~~  394 (445)
T 2ovr_B          380 DDG------------TVKLWDLKTGEF  394 (445)
T ss_dssp             TTS------------EEEEEETTTCCE
T ss_pred             CCC------------eEEEEECCCCce
Confidence            653            367777766553

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=97.36  E-value=0.015  Score=49.84  Aligned_cols=109  Identities=19%  Similarity=0.226  Sum_probs=71.0

Q ss_pred             CCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCC
Q 016877          155 DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENR  234 (381)
Q Consensus       155 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~  234 (381)
                      ..|.+...+-.++...++.+|+-.|..+      .+.+..+|+++.+=...-+++....+..++..+++||+....++  
T Consensus        14 ~~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~--   85 (243)
T 3mbr_X           14 RYPHDTTAFTEGLFYLRGHLYESTGETG------RSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNH--   85 (243)
T ss_dssp             EEECCTTCCEEEEEEETTEEEEEECCTT------SCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS--
T ss_pred             EcCCCCccccccEEEECCEEEEECCCCC------CceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCC--
Confidence            3344334556678888999999998765      35689999999986665566666677778889999999965432  


Q ss_pred             CCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEcc
Q 016877          235 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  283 (381)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG  283 (381)
                         ....|       |+.+.+  .+...+....+.+++..+++||+--|
T Consensus        86 ---~v~v~-------D~~tl~--~~~ti~~~~~Gwglt~dg~~L~vSdg  122 (243)
T 3mbr_X           86 ---EGFVY-------DLATLT--PRARFRYPGEGWALTSDDSHLYMSDG  122 (243)
T ss_dssp             ---EEEEE-------ETTTTE--EEEEEECSSCCCEEEECSSCEEEECS
T ss_pred             ---EEEEE-------ECCcCc--EEEEEeCCCCceEEeeCCCEEEEECC
Confidence               22222       233333  22222222234467777888999776

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.0098  Score=53.82  Aligned_cols=171  Identities=11%  Similarity=0.035  Sum_probs=84.1

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE--C--CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      .+..+|....++..+..+........++.+  +  +.+++.|+.+      ..+.+||..+++|..+..+... ...-.+
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~-~~~v~~  106 (379)
T 3jrp_A           34 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYD------GKVLIWKEENGRWSQIAVHAVH-SASVNS  106 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT------SCEEEEEEETTEEEEEEEECCC-SSCEEE
T ss_pred             cEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccC------CEEEEEEcCCCceeEeeeecCC-CcceEE
Confidence            456666655555554444333333333333  2  5677777764      2478889999887765544321 112233


Q ss_pred             EEEeC---CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC-CCCCcccEEEEE--------------CCEEEEEc
Q 016877          167 MVTDG---RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-PVPRYAPATQLW--------------RGRLHVMG  228 (381)
Q Consensus       167 ~~~~~---~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p~~r~~~~~~~~--------------~~~lyv~G  228 (381)
                      ++...   +.+++.|+.+        ..+..||..+..-.....+ .....-.+++..              ++.+++.|
T Consensus       107 ~~~~~~~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~  178 (379)
T 3jrp_A          107 VQWAPHEYGPLLLVASSD--------GKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTG  178 (379)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEE
T ss_pred             EEeCCCCCCCEEEEecCC--------CcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEE
Confidence            33332   4566666543        3477888876521110000 111111222222              46777777


Q ss_pred             cCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEe--C---CEEEEEccCCC
Q 016877          229 GSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--D---DRLLVIGGQEG  286 (381)
Q Consensus       229 G~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~---~~l~v~GG~~~  286 (381)
                      +.++     .+..|++.     .....|.....+........++.+  +   +++++.|+.++
T Consensus       179 ~~dg-----~i~i~d~~-----~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg  231 (379)
T 3jrp_A          179 GADN-----LVKIWKYN-----SDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDR  231 (379)
T ss_dssp             ETTS-----CEEEEEEE-----TTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTS
T ss_pred             eCCC-----eEEEEEec-----CCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCC
Confidence            7543     46666653     233345444333322222223333  3   67888887654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=97.31  E-value=0.0022  Score=58.91  Aligned_cols=166  Identities=16%  Similarity=0.101  Sum_probs=85.1

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--ee-cccccccccCcceEeecCCCCCeEEccCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TK-KDVVPKRILPATFQDLPAPELKWEKMKAA  108 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~  108 (381)
                      +++|+.|+.++     .+..||..+++  ..++....  ..++...  +. .+..+  .....+..+|..+.+....-..
T Consensus         2 ~~l~vs~~~d~-----~v~v~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~--~~d~~i~v~d~~~~~~~~~~~~   72 (391)
T 1l0q_A            2 TFAYIANSESD-----NISVIDVTSNKVTATIPVGSN--PMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIATVPA   72 (391)
T ss_dssp             EEEEEEETTTT-----EEEEEETTTTEEEEEEECSSS--EEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEEEEEC
T ss_pred             CEEEEEcCCCC-----EEEEEECCCCeEEEEeecCCC--cceEEECCCCCEEEEEC--CCCCeEEEEECCCCeEEEEEEC
Confidence            46888887555     78999999887  33333211  1122211  11 11111  1234677888877654433222


Q ss_pred             CCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCC
Q 016877          109 PVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQ  184 (381)
Q Consensus       109 p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~  184 (381)
                      +.  .-..++..  +.+||+.+..+      ..+.+||+.+++-........    ...+++..  +..+|+.++.    
T Consensus        73 ~~--~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~----  136 (391)
T 1l0q_A           73 GS--SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNG----  136 (391)
T ss_dssp             SS--SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT----
T ss_pred             CC--CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCC----
Confidence            22  11222222  33677665432      358999999887654322221    12334443  3467777643    


Q ss_pred             CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE--CCEEEEEccC
Q 016877          185 CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGS  230 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~  230 (381)
                          ...+..||+.+.+....-...  ..-..++..  ++.+|+.++.
T Consensus       137 ----~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~~~dg~~l~~~~~~  178 (391)
T 1l0q_A          137 ----DKTVSVINTVTKAVINTVSVG--RSPKGIAVTPDGTKVYVANFD  178 (391)
T ss_dssp             ----TTEEEEEETTTTEEEEEEECC--SSEEEEEECTTSSEEEEEETT
T ss_pred             ----CCEEEEEECCCCcEEEEEecC--CCcceEEECCCCCEEEEEeCC
Confidence                246899999887654432221  111233332  3457676554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.27  E-value=0.048  Score=50.97  Aligned_cols=211  Identities=13%  Similarity=0.066  Sum_probs=99.4

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVP  111 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~  111 (381)
                      +.+.+.|+.++     .+..||..+++  ..+.... ..-..+...+.....+  .....+..+|..+.+-...  +...
T Consensus       169 ~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~h~-~~v~~~~~~~~~l~s~--s~dg~i~~wd~~~~~~~~~--~~~~  238 (445)
T 2ovr_B          169 DNIIISGSTDR-----TLKVWNAETGECIHTLYGHT-STVRCMHLHEKRVVSG--SRDATLRVWDIETGQCLHV--LMGH  238 (445)
T ss_dssp             TTEEEEEETTS-----CEEEEETTTTEEEEEECCCS-SCEEEEEEETTEEEEE--ETTSEEEEEESSSCCEEEE--EECC
T ss_pred             CCEEEEEeCCC-----eEEEEECCcCcEEEEECCCC-CcEEEEEecCCEEEEE--eCCCEEEEEECCCCcEEEE--EcCC
Confidence            44666666555     67889998887  3333211 1111111111111111  1234567777766543221  1122


Q ss_pred             CCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcce
Q 016877          112 RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAH  191 (381)
Q Consensus       112 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~  191 (381)
                      .....++..++..++.|+.+      ..+.+||+.+.+-...-....   ..-.++.. ++..++.|+.++        .
T Consensus       239 ~~~v~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~~v~~~~~-~~~~l~~~~~d~--------~  300 (445)
T 2ovr_B          239 VAAVRCVQYDGRRVVSGAYD------FMVKVWDPETETCLHTLQGHT---NRVYSLQF-DGIHVVSGSLDT--------S  300 (445)
T ss_dssp             SSCEEEEEECSSCEEEEETT------SCEEEEEGGGTEEEEEECCCS---SCEEEEEE-CSSEEEEEETTS--------C
T ss_pred             cccEEEEEECCCEEEEEcCC------CEEEEEECCCCcEeEEecCCC---CceEEEEE-CCCEEEEEeCCC--------e
Confidence            22233444577777777764      247788887665332111111   11223333 666666666443        4


Q ss_pred             EEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceE-EecCCCCCCccee
Q 016877          192 TFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWR-TEIPIPRGGPHRA  270 (381)
Q Consensus       192 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~-~~~~~p~~~~~~~  270 (381)
                      +..||..+.+-...  +............++.+++.|+.++     .+..|++       .+.+-. .+...........
T Consensus       301 i~i~d~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~dg-----~i~vwd~-------~~~~~~~~~~~~~~~~~~v~  366 (445)
T 2ovr_B          301 IRVWDVETGNCIHT--LTGHQSLTSGMELKDNILVSGNADS-----TVKIWDI-------KTGQCLQTLQGPNKHQSAVT  366 (445)
T ss_dssp             EEEEETTTCCEEEE--ECCCCSCEEEEEEETTEEEEEETTS-----CEEEEET-------TTCCEEEEECSTTSCSSCEE
T ss_pred             EEEEECCCCCEEEE--EcCCcccEEEEEEeCCEEEEEeCCC-----eEEEEEC-------CCCcEEEEEccCCCCCCCEE
Confidence            78899887653221  1111111222334555666666443     4555653       222211 1111111122234


Q ss_pred             EEEeCCEEEEEccCCC
Q 016877          271 CVVVDDRLLVIGGQEG  286 (381)
Q Consensus       271 ~~~~~~~l~v~GG~~~  286 (381)
                      ++.+++++++.|+.++
T Consensus       367 ~~~~~~~~l~s~~~dg  382 (445)
T 2ovr_B          367 CLQFNKNFVITSSDDG  382 (445)
T ss_dssp             EEEECSSEEEEEETTS
T ss_pred             EEEECCCEEEEEeCCC
Confidence            5566788888887654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=97.21  E-value=0.02  Score=49.47  Aligned_cols=180  Identities=13%  Similarity=-0.029  Sum_probs=106.2

Q ss_pred             hhheeEcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeE
Q 016877           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWE  103 (381)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~  103 (381)
                      .|+...++.||+..|..+.   +.+..+|+++++  ..++-.....+.|+...++ ++....  .+..++.||+.+.+- 
T Consensus        46 qGL~~~~~~LyestG~~g~---S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw--~~~~v~v~D~~t~~~-  119 (262)
T 3nol_A           46 EGFFYRNGYFYESTGLNGR---SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW--KNGLGFVWNIRNLRQ-  119 (262)
T ss_dssp             EEEEEETTEEEEEEEETTE---EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES--SSSEEEEEETTTCCE-
T ss_pred             ceEEEECCEEEEECCCCCC---ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe--eCCEEEEEECccCcE-
Confidence            4556668999999985543   368899999998  3343322223444555544 555433  355789999987763 


Q ss_pred             EccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEec-CCC--CCCCCccceEEEEEeCCEEEEEcCC
Q 016877          104 KMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFD--MPREMAHSHLGMVTDGRYIYVVTGQ  180 (381)
Q Consensus       104 ~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~--~~~~~~r~~~~~~~~~~~iyv~GG~  180 (381)
                       +..++.+-.+.+++.-++.+|+.-|       .+.++.+|+++.+-.. +..  .+.|. +.--.+...+++||+--  
T Consensus       120 -~~ti~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~-~~lNELe~~~G~lyan~--  188 (262)
T 3nol_A          120 -VRSFNYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEEL-PELNELEWVDGEIFANV--  188 (262)
T ss_dssp             -EEEEECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEEC-CCEEEEEEETTEEEEEE--
T ss_pred             -EEEEECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccc-cccceeEEECCEEEEEE--
Confidence             3334444455666665667887643       2459999999875433 221  12221 11112445689999642  


Q ss_pred             CCCCCCCCcceEEEEECCCCc---EEeCCCCCC--------CCcccEEEEE--CCEEEEEcc
Q 016877          181 YGPQCRGPTAHTFVLDTETKK---WQDLPPLPV--------PRYAPATQLW--RGRLHVMGG  229 (381)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~---W~~~~~~p~--------~r~~~~~~~~--~~~lyv~GG  229 (381)
                            ...+++.+.|+++.+   |-.++.+..        .-.-...+..  .+++||.|-
T Consensus       189 ------w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          189 ------WQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             ------TTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             ------ccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence                  125789999999976   344443221        1122334443  568888874

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.17  E-value=0.13  Score=46.73  Aligned_cols=213  Identities=18%  Similarity=0.219  Sum_probs=112.6

Q ss_pred             cceEeecCCCC--CeEEccCCC-------CCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCC
Q 016877           90 ATFQDLPAPEL--KWEKMKAAP-------VPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPR  158 (381)
Q Consensus        90 ~~~~~~~~~~~--~W~~l~~~p-------~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~  158 (381)
                      ..+..+|..+.  .|+.-....       ........+..++.||+....       ..+.++|.++.+  |+.-..-..
T Consensus        63 g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~-------g~l~a~d~~tG~~~W~~~~~~~~  135 (376)
T 3q7m_A           63 GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSEK-------AQVYALNTSDGTVAWQTKVAGEA  135 (376)
T ss_dssp             SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEETT-------SEEEEEETTTCCEEEEEECSSCC
T ss_pred             CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcCC-------CEEEEEECCCCCEEEEEeCCCce
Confidence            36888988765  576533211       111223345568888886531       358999998764  876322111


Q ss_pred             CCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeCCCCCC--CCcccEEEEECCEEEEEccCCCCC
Q 016877          159 EMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDLPPLPV--PRYAPATQLWRGRLHVMGGSGENR  234 (381)
Q Consensus       159 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~--~r~~~~~~~~~~~lyv~GG~~~~~  234 (381)
                           ....+..++.+|+...         ...++.||+++.+  |+.-...+.  .+...+.++.++.+|+- ..++  
T Consensus       136 -----~~~p~~~~~~v~v~~~---------~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~v~~g-~~~g--  198 (376)
T 3q7m_A          136 -----LSRPVVSDGLVLIHTS---------NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTAFGAAVVG-GDNG--  198 (376)
T ss_dssp             -----CSCCEEETTEEEEECT---------TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEETTEEEEC-CTTT--
T ss_pred             -----EcCCEEECCEEEEEcC---------CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEECCEEEEE-cCCC--
Confidence                 1223456888887532         2468999998765  876443221  12223445567777763 2111  


Q ss_pred             CCCCccceEeeeecCCccCCceEEecCCCCCC--------cceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceee
Q 016877          235 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGG--------PHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVV  306 (381)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~--------~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~  306 (381)
                         ....++     ....+..|+.....|...        .....+..++.||+.+ ..+                    
T Consensus       199 ---~l~~~d-----~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~-~~g--------------------  249 (376)
T 3q7m_A          199 ---RVSAVL-----MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA-YNG--------------------  249 (376)
T ss_dssp             ---EEEEEE-----TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC-TTS--------------------
T ss_pred             ---EEEEEE-----CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe-cCc--------------------
Confidence               111111     112234677653333211        1123456688888864 221                    


Q ss_pred             cCceeEeC-CC--CCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc--eEE
Q 016877          307 YDDVYMLD-DE--MKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV--AVL  377 (381)
Q Consensus       307 ~~~v~~yd-~~--~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~  377 (381)
                        .++.+| .+  ..|+.-.  +  .   ....+..++.||+.....             .++.||+++++  |+.
T Consensus       250 --~l~~~d~~tG~~~w~~~~--~--~---~~~~~~~~~~l~~~~~~g-------------~l~~~d~~tG~~~w~~  303 (376)
T 3q7m_A          250 --NLTALDLRSGQIMWKREL--G--S---VNDFIVDGNRIYLVDQND-------------RVMALTIDGGVTLWTQ  303 (376)
T ss_dssp             --CEEEEETTTCCEEEEECC--C--C---EEEEEEETTEEEEEETTC-------------CEEEEETTTCCEEEEE
T ss_pred             --EEEEEECCCCcEEeeccC--C--C---CCCceEECCEEEEEcCCC-------------eEEEEECCCCcEEEee
Confidence              277887 43  3587531  1  1   124567788998875321             37888877655  643

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.95  E-value=0.062  Score=50.09  Aligned_cols=213  Identities=13%  Similarity=0.055  Sum_probs=100.3

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~  110 (381)
                      ++..++.|+.++     .+..||..+.+  ..+.... ..-..+.. .+.....+ .....+..+|..+.+-..  .+..
T Consensus       142 d~~~l~~g~~dg-----~i~iwd~~~~~~~~~~~~h~-~~v~~l~~-~~~~l~sg-~~dg~i~vwd~~~~~~~~--~~~~  211 (435)
T 1p22_A          142 DDQKIVSGLRDN-----TIKIWDKNTLECKRILTGHT-GSVLCLQY-DERVIITG-SSDSTVRVWDVNTGEMLN--TLIH  211 (435)
T ss_dssp             CSSEEEEEESSS-----CEEEEESSSCCEEEEECCCS-SCEEEEEC-CSSEEEEE-ETTSCEEEEESSSCCEEE--EECC
T ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCeEEEEEcCCC-CcEEEEEE-CCCEEEEE-cCCCeEEEEECCCCcEEE--EEcC
Confidence            666777777655     67889988877  3333211 11111111 11111111 123457777777665322  2222


Q ss_pred             CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecC-CCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCc
Q 016877          111 PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT  189 (381)
Q Consensus       111 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  189 (381)
                      ......+....+..++.|+.+      ..+.+||..+.+-... ..+... ...-.++.. ++..++.|+.+        
T Consensus       212 h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~~~~~~~~~~~~-~~~v~~~~~-~~~~l~s~~~d--------  275 (435)
T 1p22_A          212 HCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPTDITLRRVLVGH-RAAVNVVDF-DDKYIVSASGD--------  275 (435)
T ss_dssp             CCSCEEEEECCTTEEEEEETT------SCEEEEECSSSSCCEEEEEECCC-SSCEEEEEE-ETTEEEEEETT--------
T ss_pred             CCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCCCceeeeEecCC-CCcEEEEEe-CCCEEEEEeCC--------
Confidence            222233344456677777754      2477888876542210 011110 011223333 44455565533        


Q ss_pred             ceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcce
Q 016877          190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR  269 (381)
Q Consensus       190 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~  269 (381)
                      ..+..||..+.+-...  +............++.+++.|+.++     .+..|++       .+.+  .+..+.......
T Consensus       276 g~i~vwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~g~~dg-----~i~iwd~-------~~~~--~~~~~~~h~~~v  339 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRT--LNGHKRGIACLQYRDRLVVSGSSDN-----TIRLWDI-------ECGA--CLRVLEGHEELV  339 (435)
T ss_dssp             SEEEEEETTTCCEEEE--EECCSSCEEEEEEETTEEEEEETTS-----CEEEEET-------TTCC--EEEEECCCSSCE
T ss_pred             CeEEEEECCcCcEEEE--EcCCCCcEEEEEeCCCEEEEEeCCC-----eEEEEEC-------CCCC--EEEEEeCCcCcE
Confidence            3578899887643221  1111111223334566777776543     4555653       2221  111111111123


Q ss_pred             eEEEeCCEEEEEccCCCC
Q 016877          270 ACVVVDDRLLVIGGQEGD  287 (381)
Q Consensus       270 ~~~~~~~~l~v~GG~~~~  287 (381)
                      .++.++++.++.|+.++.
T Consensus       340 ~~~~~~~~~l~sg~~dg~  357 (435)
T 1p22_A          340 RCIRFDNKRIVSGAYDGK  357 (435)
T ss_dssp             EEEECCSSEEEEEETTSC
T ss_pred             EEEEecCCEEEEEeCCCc
Confidence            455568888888887643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=96.94  E-value=0.039  Score=49.06  Aligned_cols=98  Identities=8%  Similarity=0.006  Sum_probs=45.9

Q ss_pred             ceEeecCC--CCCeEEccCCCCCCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeCCCC-eEecCCCCCCCCccceE
Q 016877           91 TFQDLPAP--ELKWEKMKAAPVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGRFDMPREMAHSHL  165 (381)
Q Consensus        91 ~~~~~~~~--~~~W~~l~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~~~r~~~  165 (381)
                      .+..|+..  +.+++.+..++....-..++.. ++ .+|+.+..+      ..+.+||+... +...+...+..  ....
T Consensus        61 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~--~~~~  132 (343)
T 1ri6_A           61 RVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNA------GNVSVTRLEDGLPVGVVDVVEGL--DGCH  132 (343)
T ss_dssp             EEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTT------TEEEEEEEETTEEEEEEEEECCC--TTBC
T ss_pred             eEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCC------CeEEEEECCCCccccccccccCC--CCce
Confidence            45555544  6677666544433222223322 33 566665322      34777777322 22222212211  1112


Q ss_pred             EEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECCC-CcEEe
Q 016877          166 GMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTET-KKWQD  204 (381)
Q Consensus       166 ~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~-~~W~~  204 (381)
                      .++.  .++.+|+.+..        ...+.+||..+ .+...
T Consensus       133 ~~~~s~dg~~l~~~~~~--------~~~v~~~d~~~~~~~~~  166 (343)
T 1ri6_A          133 SANISPDNRTLWVPALK--------QDRICLFTVSDDGHLVA  166 (343)
T ss_dssp             CCEECTTSSEEEEEEGG--------GTEEEEEEECTTSCEEE
T ss_pred             EEEECCCCCEEEEecCC--------CCEEEEEEecCCCceee
Confidence            2333  24467776522        24588899887 65543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=96.94  E-value=0.1  Score=46.58  Aligned_cols=132  Identities=11%  Similarity=-0.046  Sum_probs=61.5

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      ..+..+|..+.+-...-..........+..-++..++.|+.+      ..+.+||..+.+-...-....   ..-.+++.
T Consensus       102 ~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~~---~~v~~~~~  172 (321)
T 3ow8_A          102 AHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHV------GKVNIFGVESGKKEYSLDTRG---KFILSIAY  172 (321)
T ss_dssp             SEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTT------SEEEEEETTTCSEEEEEECSS---SCEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCC------CcEEEEEcCCCceeEEecCCC---ceEEEEEE
Confidence            356677776654322111111111112222355677777654      347788887664322111111   11223333


Q ss_pred             -eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          170 -DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       170 -~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                       -+++.++.|+.++        .+..||..+.+-...-... ...-.+++. -++++++.|+.++     .+..|++
T Consensus       173 spdg~~lasg~~dg--------~i~iwd~~~~~~~~~~~~h-~~~v~~l~~spd~~~l~s~s~dg-----~i~iwd~  235 (321)
T 3ow8_A          173 SPDGKYLASGAIDG--------IINIFDIATGKLLHTLEGH-AMPIRSLTFSPDSQLLVTASDDG-----YIKIYDV  235 (321)
T ss_dssp             CTTSSEEEEEETTS--------CEEEEETTTTEEEEEECCC-SSCCCEEEECTTSCEEEEECTTS-----CEEEEET
T ss_pred             CCCCCEEEEEcCCC--------eEEEEECCCCcEEEEEccc-CCceeEEEEcCCCCEEEEEcCCC-----eEEEEEC
Confidence             3556667776543        3788998876532211111 111122333 3567777776543     3556653

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.89  E-value=0.23  Score=46.38  Aligned_cols=266  Identities=10%  Similarity=0.046  Sum_probs=120.0

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeeecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      .++.+.+.|+.++     .+..||..+.+  ..+.. +...-..+....+..... ......+..+|..+.+-..  .+.
T Consensus       130 ~~~~~l~sgs~dg-----~i~vwd~~~~~~~~~~~~-h~~~V~~l~~~~~~~l~s-~s~dg~i~vwd~~~~~~~~--~~~  200 (464)
T 3v7d_B          130 FEDNYVITGADDK-----MIRVYDSINKKFLLQLSG-HDGGVWALKYAHGGILVS-GSTDRTVRVWDIKKGCCTH--VFE  200 (464)
T ss_dssp             EETTEEEEEETTS-----CEEEEETTTTEEEEEECC-CSSCEEEEEECSTTEEEE-EETTSCEEEEETTTTEEEE--EEC
T ss_pred             ECCCEEEEEcCCC-----cEEEEECCCCcEEEEEeC-CCcCEEEEEEcCCCEEEE-EeCCCCEEEEECCCCcEEE--EEC
Confidence            3556667776555     67889988887  33432 111111111111111111 1123356677776654322  121


Q ss_pred             CCCCCc-eEEEE---CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCC---------------------CCCCCccce
Q 016877          110 VPRLDG-AAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD---------------------MPREMAHSH  164 (381)
Q Consensus       110 ~~r~~~-~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---------------------~~~~~~r~~  164 (381)
                      ...... ++...   ++..++.|+.++      .+.++|..+.+-.....                     +..  ....
T Consensus       201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  272 (464)
T 3v7d_B          201 GHNSTVRCLDIVEYKNIKYIVTGSRDN------TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG--HMAS  272 (464)
T ss_dssp             CCSSCEEEEEEEESSSCEEEEEEETTS------CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC--CSSC
T ss_pred             CCCCccEEEEEecCCCCCEEEEEcCCC------cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC--ccce
Confidence            111111 12222   447777777653      46677776554221100                     000  0111


Q ss_pred             EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceE
Q 016877          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      ......++.+++.|+.++        .+..||..+.+-...-... ...-.+++.. ++..++.|+.++     .+..|+
T Consensus       273 v~~~~~~~~~l~~~~~d~--------~i~vwd~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~sg~~dg-----~i~vwd  338 (464)
T 3v7d_B          273 VRTVSGHGNIVVSGSYDN--------TLIVWDVAQMKCLYILSGH-TDRIYSTIYDHERKRCISASMDT-----TIRIWD  338 (464)
T ss_dssp             EEEEEEETTEEEEEETTS--------CEEEEETTTTEEEEEECCC-SSCEEEEEEETTTTEEEEEETTS-----CEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCC--------eEEEEECCCCcEEEEecCC-CCCEEEEEEcCCCCEEEEEeCCC-----cEEEEE
Confidence            112233344555665433        4788998876532221111 1122233333 456666766543     455565


Q ss_pred             eeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEc
Q 016877          244 LAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVL  322 (381)
Q Consensus       244 ~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i  322 (381)
                      +       .+.+  .+..+........++.+.++.++.|+.++.                      +..|| .+..-...
T Consensus       339 ~-------~~~~--~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~----------------------v~vwd~~~~~~~~~  387 (464)
T 3v7d_B          339 L-------ENGE--LMYTLQGHTALVGLLRLSDKFLVSAAADGS----------------------IRGWDANDYSRKFS  387 (464)
T ss_dssp             T-------TTTE--EEEEECCCSSCEEEEEECSSEEEEEETTSE----------------------EEEEETTTCCEEEE
T ss_pred             C-------CCCc--EEEEEeCCCCcEEEEEEcCCEEEEEeCCCc----------------------EEEEECCCCceeee
Confidence            3       2222  221122112223455566777777776542                      55665 33221111


Q ss_pred             CCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCce
Q 016877          323 PSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVA  375 (381)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W  375 (381)
                        ..... .....+...++.+++.|+ ++            .+.+||.++++-
T Consensus       388 --~~~~~-~~~~~~~~~~~~~l~~~~-dg------------~i~iwd~~~g~~  424 (464)
T 3v7d_B          388 --YHHTN-LSAITTFYVSDNILVSGS-EN------------QFNIYNLRSGKL  424 (464)
T ss_dssp             --EECTT-CCCEEEEEECSSEEEEEE-TT------------EEEEEETTTCCE
T ss_pred             --ecCCC-CccEEEEEeCCCEEEEec-CC------------eEEEEECCCCcE
Confidence              11111 112334667788888776 31            378888877653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=96.84  E-value=0.014  Score=50.44  Aligned_cols=111  Identities=15%  Similarity=0.159  Sum_probs=67.5

Q ss_pred             CCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC
Q 016877          153 RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE  232 (381)
Q Consensus       153 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  232 (381)
                      +...|....-+..++...++.+|+..|..+      .+.+.++|+++.+=...-+++..-....++..+++||+....++
T Consensus        34 v~~~phd~~~ftqGL~~~~~~LyestG~~g------~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           34 VHSYPHDTKAFTEGFFYRNGYFYESTGLNG------RSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEECCTTCEEEEEEEETTEEEEEEEETT------EEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEecCCCCcccceEEEECCEEEEECCCCC------CceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCC
Confidence            333444323344566677999999988665      46789999999876554456554455667888999999965332


Q ss_pred             CCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEcc
Q 016877          233 NRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGG  283 (381)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG  283 (381)
                           ....|       |+.+.+-..  ..+....+.+++.-+++||+.-|
T Consensus       108 -----~v~v~-------D~~t~~~~~--ti~~~~eG~glt~dg~~L~~SdG  144 (262)
T 3nol_A          108 -----LGFVW-------NIRNLRQVR--SFNYDGEGWGLTHNDQYLIMSDG  144 (262)
T ss_dssp             -----EEEEE-------ETTTCCEEE--EEECSSCCCCEEECSSCEEECCS
T ss_pred             -----EEEEE-------ECccCcEEE--EEECCCCceEEecCCCEEEEECC
Confidence                 22222       244433322  22222233466667778888765

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=96.84  E-value=0.11  Score=47.96  Aligned_cols=152  Identities=7%  Similarity=-0.033  Sum_probs=73.2

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eee-cC---CCCCCC-ceeEEe--eecccccccccCcceEeecCCCCCeEE
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IIL-PN---NGPQKG-ENIGVK--TKKDVVPKRILPATFQDLPAPELKWEK  104 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~-p~---~~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~  104 (381)
                      ++.+++.++.++     .+..||+.+++ ... +.   ..+... .++...  +.....+  .....+..+|..+.+...
T Consensus       133 ~~~~~~~~~~~~-----~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~--~~d~~v~~~d~~~~~~~~  205 (433)
T 3bws_A          133 NTRLAIPLLEDE-----GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQ--MQANAVHVFDLKTLAYKA  205 (433)
T ss_dssp             SSEEEEEBTTSS-----SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEE--GGGTEEEEEETTTCCEEE
T ss_pred             CCeEEEEeCCCC-----eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEE--CCCCEEEEEECCCceEEE
Confidence            678888876443     57899998887 332 22   111111 111111  1111111  123467788877655332


Q ss_pred             ccCCCCCCCCc-eEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCC
Q 016877          105 MKAAPVPRLDG-AAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQ  180 (381)
Q Consensus       105 l~~~p~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~  180 (381)
                      .-.  ...... .++..  +..+|+.+..+      ..+.+||+.+.+....-....    ...+++.. +++.+++++.
T Consensus       206 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~g~~l~~~~~  273 (433)
T 3bws_A          206 TVD--LTGKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTDKIG----LPRGLLLSKDGKELYIAQF  273 (433)
T ss_dssp             EEE--CSSSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECCCCS----EEEEEEECTTSSEEEEEEE
T ss_pred             EEc--CCCCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEecCCC----CceEEEEcCCCCEEEEEEC
Confidence            211  111112 22222  34677776543      358899998887654322221    12334432 3433334433


Q ss_pred             CCCCCCCCcceEEEEECCCCcEE
Q 016877          181 YGPQCRGPTAHTFVLDTETKKWQ  203 (381)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~W~  203 (381)
                      ...........+..||+.+.+-.
T Consensus       274 ~~~~~~~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          274 SASNQESGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             ESCTTCSCCEEEEEEETTTTEEE
T ss_pred             CCCccccCCCeEEEEECCCCcEE
Confidence            22111001357889999887543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.75  E-value=0.022  Score=57.56  Aligned_cols=95  Identities=8%  Similarity=0.010  Sum_probs=54.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE--C--CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--K--NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~--~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      .+..+|....++..+..+........++.+  +  +..++.|+.++      .+.++|..+++|..+..+.... ..-.+
T Consensus        32 ~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg------~I~vwd~~~~~~~~~~~~~~h~-~~V~~  104 (753)
T 3jro_A           32 TIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG------KVLIWKEENGRWSQIAVHAVHS-ASVNS  104 (753)
T ss_dssp             EEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS------CEEEEEEETTEEEEEEEECCCS-SCEEE
T ss_pred             cEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC------eEEEEECCCCcccccccccCCC-CCeEE
Confidence            566677666666555544433333333333  3  56777777642      4788899888877655443311 22233


Q ss_pred             EEEe-C--CEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          167 MVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       167 ~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      ++.. +  +.+++.|+.+        ..+..||..+.
T Consensus       105 v~~sp~~~~~~l~sgs~d--------g~I~vwdl~~~  133 (753)
T 3jro_A          105 VQWAPHEYGPLLLVASSD--------GKVSVVEFKEN  133 (753)
T ss_dssp             EEECCGGGCSEEEEEETT--------SEEEEEECCSS
T ss_pred             EEECCCCCCCEEEEEeCC--------CcEEEEEeecC
Confidence            3333 2  5567777643        34778888765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.70  E-value=0.065  Score=48.21  Aligned_cols=128  Identities=10%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceE-EEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAA-IQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~-~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..||..+.++..+..+........+ +.. ++.+++.|+.+      ..+.+||..+.++.....+... ...-.++
T Consensus        30 ~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~-~~~v~~~  102 (372)
T 1k8k_C           30 HEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRI-NRAARCV  102 (372)
T ss_dssp             SEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCC-SSCEEEE
T ss_pred             CEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCC------CeEEEEECCCCeeeeeEEeecC-CCceeEE
Confidence            3577778777766555544333322222 222 55667777654      2478889888877654322221 1122233


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCc-EEeCCCC--CCCCcccEEEEE-CCEEEEEccCCC
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPL--PVPRYAPATQLW-RGRLHVMGGSGE  232 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~--p~~r~~~~~~~~-~~~lyv~GG~~~  232 (381)
                      +.. ++..++.|+.++        .+..||..+.. |......  +....-.+++.. ++++++.|+.++
T Consensus       103 ~~~~~~~~l~~~~~d~--------~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C          103 RWAPNEKKFAVGSGSR--------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EECTTSSEEEEEETTS--------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCCEEEEEeCCC--------EEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence            332 455666666443        25555554433 3222211  112222233332 556777776543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=96.66  E-value=0.16  Score=44.30  Aligned_cols=27  Identities=26%  Similarity=0.102  Sum_probs=18.9

Q ss_pred             heeEcCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           29 FALVADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        29 ~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++..++..++.|+.++     .+..||..+..
T Consensus        24 ~~~~~~~~l~s~~~dg-----~v~vw~~~~~~   50 (313)
T 3odt_A           24 VVAVDDSKVASVSRDG-----TVRLWSKDDQW   50 (313)
T ss_dssp             EEEEETTEEEEEETTS-----EEEEEEESSSE
T ss_pred             EEecCCCEEEEEEcCC-----cEEEEECCCCE
Confidence            3445676777877665     67888887776

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=96.66  E-value=0.3  Score=45.53  Aligned_cols=133  Identities=10%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          119 QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       119 ~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ..++.+++.|+.+      ..+.+||..+.+-...-....   ..-.+++. .++..++.|+.++        .+..||.
T Consensus       277 ~~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~sg~~dg--------~i~vwd~  339 (464)
T 3v7d_B          277 SGHGNIVVSGSYD------NTLIVWDVAQMKCLYILSGHT---DRIYSTIYDHERKRCISASMDT--------TIRIWDL  339 (464)
T ss_dssp             EEETTEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEEEEETTTTEEEEEETTS--------CEEEEET
T ss_pred             cCCCCEEEEEeCC------CeEEEEECCCCcEEEEecCCC---CCEEEEEEcCCCCEEEEEeCCC--------cEEEEEC
Confidence            3345566667654      248889988765433211111   11223333 3445666666443        4788998


Q ss_pred             CCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCE
Q 016877          198 ETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDR  277 (381)
Q Consensus       198 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~  277 (381)
                      .+.+-..  .+......-......+..++.|+.++     .+..|++.     .....+...   ........+...+++
T Consensus       340 ~~~~~~~--~~~~h~~~v~~~~~~~~~l~s~s~dg-----~v~vwd~~-----~~~~~~~~~---~~~~~~~~~~~~~~~  404 (464)
T 3v7d_B          340 ENGELMY--TLQGHTALVGLLRLSDKFLVSAAADG-----SIRGWDAN-----DYSRKFSYH---HTNLSAITTFYVSDN  404 (464)
T ss_dssp             TTTEEEE--EECCCSSCEEEEEECSSEEEEEETTS-----EEEEEETT-----TCCEEEEEE---CTTCCCEEEEEECSS
T ss_pred             CCCcEEE--EEeCCCCcEEEEEEcCCEEEEEeCCC-----cEEEEECC-----CCceeeeec---CCCCccEEEEEeCCC
Confidence            8765322  22211222233345567777776543     45566532     111122211   111122234556777


Q ss_pred             EEEEcc
Q 016877          278 LLVIGG  283 (381)
Q Consensus       278 l~v~GG  283 (381)
                      +++.|+
T Consensus       405 ~l~~~~  410 (464)
T 3v7d_B          405 ILVSGS  410 (464)
T ss_dssp             EEEEEE
T ss_pred             EEEEec
Confidence            777776

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=96.55  E-value=0.05  Score=47.12  Aligned_cols=148  Identities=8%  Similarity=-0.043  Sum_probs=93.6

Q ss_pred             hhheeEcCEEEEecCCCCCcccceeeeeeCCCce--eee-cCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCe
Q 016877           27 LGFALVADFFWASSSKFTSSYLNIASNWSPYHNS--IIL-PNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKW  102 (381)
Q Consensus        27 ~~~~~~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~-p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W  102 (381)
                      +|+...++.||+..|..+     .+..+|+++++  ..+ ++  ...+.|+...++ ++....  .+..++.||+.+.+-
T Consensus        58 qGL~~~~~~Ly~stG~~g-----~v~~iD~~Tgkv~~~~l~~--~~FgeGit~~g~~Ly~ltw--~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           58 QGLVFHQGHFFESTGHQG-----TLRQLSLESAQPVWMERLG--NIFAEGLASDGERLYQLTW--TEGLLFTWSGMPPQR  128 (268)
T ss_dssp             EEEEEETTEEEEEETTTT-----EEEECCSSCSSCSEEEECT--TCCEEEEEECSSCEEEEES--SSCEEEEEETTTTEE
T ss_pred             ceEEEECCEEEEEcCCCC-----EEEEEECCCCcEEeEECCC--CcceeEEEEeCCEEEEEEc--cCCEEEEEECCcCcE
Confidence            566777899999999655     38899999998  333 32  112334555544 555433  356788999987653


Q ss_pred             EEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEec-CC--CCCCCCccceEEEEEeCCEEEEEcC
Q 016877          103 EKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RF--DMPREMAHSHLGMVTDGRYIYVVTG  179 (381)
Q Consensus       103 ~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~--~~~~~~~r~~~~~~~~~~~iyv~GG  179 (381)
                        +..++.+-.+.+++.-++++|+.-|       .+.+..+|+++.+-.. +.  .-+.+. ..-..+...+++||+-- 
T Consensus       129 --~~ti~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~~~g~~v-~~lNeLe~~dG~lyanv-  197 (268)
T 3nok_A          129 --ERTTRYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVKLRGQPV-ELINELECANGVIYANI-  197 (268)
T ss_dssp             --EEEEECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC-CCEEEEEEETTEEEEEE-
T ss_pred             --EEEEeCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeCCCCccc-ccccccEEeCCEEEEEE-
Confidence              3334444455667777889998754       2469999999876443 21  122221 11223455688999642 


Q ss_pred             CCCCCCCCCcceEEEEECCCCc
Q 016877          180 QYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                             ...+++.+.|+++.+
T Consensus       198 -------w~s~~I~vIDp~TG~  212 (268)
T 3nok_A          198 -------WHSSDVLEIDPATGT  212 (268)
T ss_dssp             -------TTCSEEEEECTTTCB
T ss_pred             -------CCCCeEEEEeCCCCc
Confidence                   115789999999876

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.50  E-value=0.07  Score=46.43  Aligned_cols=168  Identities=12%  Similarity=0.030  Sum_probs=90.3

Q ss_pred             ecCCCCCCCCccceEEEEEeC-CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEcc
Q 016877          151 GGRFDMPREMAHSHLGMVTDG-RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGG  229 (381)
Q Consensus       151 ~~~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG  229 (381)
                      +.+...|.+...+.++++..+ +.+|+..|..+      .+.+..+|+++.+=...-+++.......++..+++||+..-
T Consensus        10 ~vv~~~p~~~~~f~~Gl~~~~dg~Lyvstg~~~------~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~   83 (266)
T 2iwa_A           10 EVLNEFPHDPYAFTQGLVYAENDTLFESTGLYG------RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW   83 (266)
T ss_dssp             EEEEEEECCTTCCEEEEEECSTTEEEEEECSTT------TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET
T ss_pred             eEEEEEECCCCCCcccEEEeCCCeEEEECCCCC------CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe
Confidence            334444443222346677766 89999877433      36799999999875443344443444567778999999964


Q ss_pred             CCCCCCCCCccceEeeeecCCccCCceEEecCCCCC-CcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecC
Q 016877          230 SGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRG-GPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYD  308 (381)
Q Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~-~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~  308 (381)
                      .++     ....+       |+.+.+  .+..+|.+ ..+.+.+.-++++|+..|.                       +
T Consensus        84 ~~~-----~v~vi-------D~~t~~--v~~~i~~g~~~g~glt~Dg~~l~vs~gs-----------------------~  126 (266)
T 2iwa_A           84 LKN-----IGFIY-------DRRTLS--NIKNFTHQMKDGWGLATDGKILYGSDGT-----------------------S  126 (266)
T ss_dssp             TCS-----EEEEE-------ETTTTE--EEEEEECCSSSCCEEEECSSSEEEECSS-----------------------S
T ss_pred             cCC-----EEEEE-------ECCCCc--EEEEEECCCCCeEEEEECCCEEEEECCC-----------------------C
Confidence            322     22222       233332  22222111 2233455567789987642                       2


Q ss_pred             ceeEeC-CCCC-eEEcC--CCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          309 DVYMLD-DEMK-WKVLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       309 ~v~~yd-~~~~-W~~i~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                      .++.+| .+.+ -..++  .-+.+..... .+...+++||+--...            ++|.+.|+++++
T Consensus       127 ~l~viD~~t~~v~~~I~Vg~~~~p~~~~n-ele~~dg~lyvn~~~~------------~~V~vID~~tg~  183 (266)
T 2iwa_A          127 ILYEIDPHTFKLIKKHNVKYNGHRVIRLN-ELEYINGEVWANIWQT------------DCIARISAKDGT  183 (266)
T ss_dssp             EEEEECTTTCCEEEEEECEETTEECCCEE-EEEEETTEEEEEETTS------------SEEEEEETTTCC
T ss_pred             eEEEEECCCCcEEEEEEECCCCcccccce-eEEEECCEEEEecCCC------------CeEEEEECCCCc
Confidence            488887 5543 22221  1111111111 2334488888663221            358888887764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.44  E-value=0.081  Score=47.57  Aligned_cols=104  Identities=13%  Similarity=0.188  Sum_probs=56.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.++++|+.+      ..+.+||..+.+|..+..+.... ..-.+++.. ++.+++.|+.++        .+..||.++
T Consensus        19 ~~~~l~~~~~d------~~v~i~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~l~~~~~dg--------~i~vwd~~~   83 (372)
T 1k8k_C           19 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEHN-GQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKG   83 (372)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECCS-SCEEEEEEETTTTEEEEEETTS--------CEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCcEEeeeeecCCC-CcccEEEEeCCCCEEEEEcCCC--------eEEEEECCC
Confidence            45677777653      35888999988776654443211 112233333 455666666433        477888888


Q ss_pred             CcEEeCCCCC-CCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          200 KKWQDLPPLP-VPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       200 ~~W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .++.....+. ....-.++... ++++++.|+.++     .+..|++
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~v~i~d~  125 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYF  125 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEE
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCC-----EEEEEEe
Confidence            8765543222 22222233332 556777766443     4556665

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=96.39  E-value=0.11  Score=45.27  Aligned_cols=152  Identities=10%  Similarity=-0.046  Sum_probs=91.8

Q ss_pred             hhheeEc-CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCe
Q 016877           27 LGFALVA-DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKW  102 (381)
Q Consensus        27 ~~~~~~~-~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W  102 (381)
                      ||+++-. +.||+..|..+.   +.+..+|+.+++  ..++........++...++ .+....  .+..+..+|+.+.+ 
T Consensus        24 ~Gl~~~~dg~Lyvstg~~~~---s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~--~~~~v~viD~~t~~-   97 (266)
T 2iwa_A           24 QGLVYAENDTLFESTGLYGR---SSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVW--LKNIGFIYDRRTLS-   97 (266)
T ss_dssp             EEEEECSTTEEEEEECSTTT---CEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEET--TCSEEEEEETTTTE-
T ss_pred             ccEEEeCCCeEEEECCCCCC---CEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEe--cCCEEEEEECCCCc-
Confidence            6677766 899999874332   478999999998  4444322233445555544 444433  45678899988654 


Q ss_pred             EEccCCCCC-CCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEec-CC--CCCCCCccceEEEEEeCCEEEEEc
Q 016877          103 EKMKAAPVP-RLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RF--DMPREMAHSHLGMVTDGRYIYVVT  178 (381)
Q Consensus       103 ~~l~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~--~~~~~~~r~~~~~~~~~~~iyv~G  178 (381)
                       .+..++.+ ..+.+++.-++++|+.-|       .+.+..+|+++.+-.. ++  ..+.|..+ ...+...++++|+--
T Consensus        98 -v~~~i~~g~~~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~~-~nele~~dg~lyvn~  168 (266)
T 2iwa_A           98 -NIKNFTHQMKDGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVIR-LNELEYINGEVWANI  168 (266)
T ss_dssp             -EEEEEECCSSSCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECCC-EEEEEEETTEEEEEE
T ss_pred             -EEEEEECCCCCeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCccccc-ceeEEEECCEEEEec
Confidence             33333333 333444444568888643       2469999999875433 22  11222211 223444588999763


Q ss_pred             CCCCCCCCCCcceEEEEECCCCc
Q 016877          179 GQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       179 G~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      .        ..+++.+.|+++.+
T Consensus       169 ~--------~~~~V~vID~~tg~  183 (266)
T 2iwa_A          169 W--------QTDCIARISAKDGT  183 (266)
T ss_dssp             T--------TSSEEEEEETTTCC
T ss_pred             C--------CCCeEEEEECCCCc
Confidence            2        14789999999876

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.37  E-value=0.25  Score=45.34  Aligned_cols=92  Identities=4%  Similarity=-0.065  Sum_probs=47.8

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+.+....  +........+...++.+++.|+.+      ..+.++|.....  -..+.....    .-.++
T Consensus       156 g~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~----~v~~~  223 (401)
T 4aez_A          156 GLVDIYDVESQTKLRT--MAGHQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQGHSS----EVCGL  223 (401)
T ss_dssp             SCEEEEETTTCCEEEE--ECCCSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEECCSS----CEEEE
T ss_pred             CeEEEEECcCCeEEEE--ecCCCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcCCCC----CeeEE
Confidence            3567777766653222  222222333444566777777764      357788887432  111211111    11223


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      +.. ++.+++.|+.++        .+..||..+.+
T Consensus       224 ~~~~~~~~l~s~~~d~--------~v~iwd~~~~~  250 (401)
T 4aez_A          224 AWRSDGLQLASGGNDN--------VVQIWDARSSI  250 (401)
T ss_dssp             EECTTSSEEEEEETTS--------CEEEEETTCSS
T ss_pred             EEcCCCCEEEEEeCCC--------eEEEccCCCCC
Confidence            332 556677776443        47889988754

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=96.30  E-value=0.47  Score=42.34  Aligned_cols=100  Identities=9%  Similarity=0.046  Sum_probs=49.0

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++. ++.|+.+      ..+.++|+.+.+-...-.-..   ..-.+++. -++.+++.|+.++        .+..||..+
T Consensus       154 ~~~-l~s~s~d------~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sg~~d~--------~v~~wd~~~  215 (340)
T 1got_B          154 DNQ-IVTSSGD------TTCALWDIETGQQTTTFTGHT---GDVMSLSLAPDTRLFVSGACDA--------SAKLWDVRE  215 (340)
T ss_dssp             TTE-EEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCc-EEEEECC------CcEEEEECCCCcEEEEEcCCC---CceEEEEECCCCCEEEEEeCCC--------cEEEEECCC
Confidence            455 4555543      347888988776443211111   11223333 3456777776544        377888877


Q ss_pred             CcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .+-...-.. ....-.+++. -++++++.|+.++     .+..|++
T Consensus       216 ~~~~~~~~~-h~~~v~~v~~~p~~~~l~s~s~d~-----~v~iwd~  255 (340)
T 1got_B          216 GMCRQTFTG-HESDINAICFFPNGNAFATGSDDA-----TCRLFDL  255 (340)
T ss_dssp             CSEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CeeEEEEcC-CcCCEEEEEEcCCCCEEEEEcCCC-----cEEEEEC
Confidence            543221111 1111122222 2566777777543     4556653

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=96.30  E-value=0.059  Score=47.80  Aligned_cols=22  Identities=14%  Similarity=0.077  Sum_probs=14.8

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      +.+.+.||.++     .+-.||+.+..
T Consensus        51 ~~~l~S~s~D~-----~i~vWd~~~~~   72 (340)
T 4aow_A           51 PDMILSASRDK-----TIIMWKLTRDE   72 (340)
T ss_dssp             TTEEEEEETTS-----CEEEEEECCSS
T ss_pred             CCEEEEEcCCC-----eEEEEECCCCC
Confidence            46777887666     56777776544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=96.29  E-value=0.35  Score=42.28  Aligned_cols=64  Identities=13%  Similarity=0.141  Sum_probs=35.1

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC---CEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG---RYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +.+++.|+.+      ..+.++|..+.+|..+..+... ...-.+++...   +.+++.|+.++        .+..||..
T Consensus        67 g~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~g~~l~s~s~d~--------~v~~wd~~  131 (297)
T 2pm7_B           67 GTILASCSYD------GKVMIWKEENGRWSQIAVHAVH-SASVNSVQWAPHEYGPMLLVASSDG--------KVSVVEFK  131 (297)
T ss_dssp             CSEEEEEETT------TEEEEEEBSSSCBCCCEEECCC-SSCEEEEEECCGGGCSEEEEEETTS--------EEEEEEBC
T ss_pred             CCEEEEEcCC------CEEEEEEcCCCceEEEEEeecC-CCceeEEEeCcCCCCcEEEEEECCC--------cEEEEEec
Confidence            5677777765      2477889888877665433221 01122333332   45666665433        46667766


Q ss_pred             CC
Q 016877          199 TK  200 (381)
Q Consensus       199 ~~  200 (381)
                      +.
T Consensus       132 ~~  133 (297)
T 2pm7_B          132 EN  133 (297)
T ss_dssp             SS
T ss_pred             CC
Confidence            54

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=96.23  E-value=0.091  Score=47.07  Aligned_cols=101  Identities=8%  Similarity=0.030  Sum_probs=47.8

Q ss_pred             cceEeecCCCCCeEEccCCCCC--CCCceEEEECC-EEEEEecCCCCCCcccceEEEeCC-CCeEecCCCCC----CCC-
Q 016877           90 ATFQDLPAPELKWEKMKAAPVP--RLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFT-DNTWGGRFDMP----REM-  160 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~--r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~-~~~W~~~~~~~----~~~-  160 (381)
                      ..+..|+..+.+++.+..+...  +....+..-++ .||+.+..+      ..+.+||+. ..+...+..++    .|. 
T Consensus        63 ~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~------~~v~v~~~~~~g~~~~~~~~~~~~~~p~~  136 (347)
T 3hfq_A           63 GGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHK------GTAEVMKIAADGALTLTDTVQHSGHGPRP  136 (347)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTT------TEEEEEEECTTSCEEEEEEEECCCCCSST
T ss_pred             ceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCC------CEEEEEEeCCCCCeeecceeecCCCCCCc
Confidence            4677788776666665542211  11222223344 577665321      246677764 22333221111    010 


Q ss_pred             ---ccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECC-CCcEEe
Q 016877          161 ---AHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE-TKKWQD  204 (381)
Q Consensus       161 ---~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~-~~~W~~  204 (381)
                         ....+.++. -++++|+.+..        .+.+.+||.. +.+...
T Consensus       137 ~~~~~~~~~~~~spdg~l~v~~~~--------~~~v~~~~~~~~g~~~~  177 (347)
T 3hfq_A          137 EQDGSHIHYTDLTPDNRLAVIDLG--------SDKVYVYNVSDAGQLSE  177 (347)
T ss_dssp             TCSSCCEEEEEECTTSCEEEEETT--------TTEEEEEEECTTSCEEE
T ss_pred             cccCCCceEEEECCCCcEEEEeCC--------CCEEEEEEECCCCcEEE
Confidence               011233443 35567776431        2468888887 555544

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=96.19  E-value=0.27  Score=43.09  Aligned_cols=99  Identities=15%  Similarity=0.123  Sum_probs=48.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.+      ..+.+||..+.+-...  +... ...-.++.. -++.+++.|+.++        .+..||..+
T Consensus        76 ~~~~l~s~~~d------~~i~vwd~~~~~~~~~--~~~~-~~~v~~~~~~~~~~~l~s~~~d~--------~i~iwd~~~  138 (312)
T 4ery_A           76 DSNLLVSASDD------KTLKIWDVSSGKCLKT--LKGH-SNYVFCCNFNPQSNLIVSGSFDE--------SVRIWDVKT  138 (312)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTCCEEEE--EECC-SSCEEEEEECSSSSEEEEEETTS--------CEEEEETTT
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEE--EcCC-CCCEEEEEEcCCCCEEEEEeCCC--------cEEEEECCC
Confidence            45677777754      3578889887653321  1110 011122222 2445666666543        378889887


Q ss_pred             CcEEeCCCCCCCC-cccEEEE-ECCEEEEEccCCCCCCCCCccceE
Q 016877          200 KKWQDLPPLPVPR-YAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       200 ~~W~~~~~~p~~r-~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      .+-...  ++... .-.+++. -++++++.|+.++     .+..|+
T Consensus       139 ~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d~-----~i~~wd  177 (312)
T 4ery_A          139 GKCLKT--LPAHSDPVSAVHFNRDGSLIVSSSYDG-----LCRIWD  177 (312)
T ss_dssp             CCEEEE--ECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CEEEEE--ecCCCCcEEEEEEcCCCCEEEEEeCCC-----cEEEEE
Confidence            653221  11111 1112222 2556777776543     355555

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.085  Score=47.46  Aligned_cols=96  Identities=11%  Similarity=0.097  Sum_probs=52.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-C--CEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G--RYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~--~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.|+.++      .+.+||...+++..+..+... ...-.+++.. +  +.+++.|+.++        .+..||.
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~l~s~~~dg--------~v~iwd~   86 (379)
T 3jrp_A           22 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   86 (379)
T ss_dssp             SSSEEEEEETTS------CEEEEEEETTEEEEEEEECCC-SSCEEEEEECCGGGCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEECCC------cEEEEecCCCcceeeeEecCC-CCcEEEEEeCCCCCCCEEEEeccCC--------EEEEEEc
Confidence            455667776542      477788876676665444321 1112233332 2  55666766543        3788899


Q ss_pred             CCCcEEeCCCCCCC-CcccEEEEE-C--CEEEEEccCC
Q 016877          198 ETKKWQDLPPLPVP-RYAPATQLW-R--GRLHVMGGSG  231 (381)
Q Consensus       198 ~~~~W~~~~~~p~~-r~~~~~~~~-~--~~lyv~GG~~  231 (381)
                      .+.+|..+..+... ..-.+++.. +  +.+++.|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  124 (379)
T 3jrp_A           87 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD  124 (379)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred             CCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCC
Confidence            88887766544322 222233332 2  5567776654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.23  Score=45.29  Aligned_cols=63  Identities=13%  Similarity=0.121  Sum_probs=31.5

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +..+++|+.+      ..+.+||..+.+-...-....   ..-.+++. .++.+++.|+.++        .+..||..+.
T Consensus       217 ~~~~~~~~~~------g~i~~~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~d~--------~i~i~d~~~~  279 (425)
T 1r5m_A          217 DDKFVIPGPK------GAIFVYQITEKTPTGKLIGHH---GPISVLEFNDTNKLLLSASDDG--------TLRIWHGGNG  279 (425)
T ss_dssp             TTEEEEECGG------GCEEEEETTCSSCSEEECCCS---SCEEEEEEETTTTEEEEEETTS--------CEEEECSSSB
T ss_pred             CCEEEEEcCC------CeEEEEEcCCCceeeeeccCC---CceEEEEECCCCCEEEEEcCCC--------EEEEEECCCC
Confidence            3345666543      358889988753222111111   11123333 3455666665433        3778887764


Q ss_pred             c
Q 016877          201 K  201 (381)
Q Consensus       201 ~  201 (381)
                      +
T Consensus       280 ~  280 (425)
T 1r5m_A          280 N  280 (425)
T ss_dssp             S
T ss_pred             c
Confidence            3

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=96.04  E-value=0.12  Score=46.46  Aligned_cols=184  Identities=11%  Similarity=0.098  Sum_probs=87.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.||.++      .+.++|..+++|.....+.......-.+++. -+++.++.|+.++        .+..+|..+
T Consensus        27 ~g~~las~~~D~------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~--------~v~iw~~~~   92 (345)
T 3fm0_A           27 AGTLLASCGGDR------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA--------TTCIWKKNQ   92 (345)
T ss_dssp             TSSCEEEEETTS------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS--------CEEEEEECC
T ss_pred             CCCEEEEEcCCC------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC--------cEEEEEccC
Confidence            567777887653      4777888888775432211110112223333 2456677776544        356677766


Q ss_pred             CcEEeCCCCCC-CCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEe--C
Q 016877          200 KKWQDLPPLPV-PRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--D  275 (381)
Q Consensus       200 ~~W~~~~~~p~-~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~  275 (381)
                      ..+..+..+.. ...-.+++.. ++++++.|+.++     .+..|++.      ....+..+..+.........+.+  +
T Consensus        93 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~-----~v~iwd~~------~~~~~~~~~~~~~h~~~v~~~~~~p~  161 (345)
T 3fm0_A           93 DDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK-----SVWVWEVD------EEDEYECVSVLNSHTQDVKHVVWHPS  161 (345)
T ss_dssp             C-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEEC------TTSCEEEEEEECCCCSCEEEEEECSS
T ss_pred             CCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC-----eEEEEECC------CCCCeEEEEEecCcCCCeEEEEECCC
Confidence            66554433321 1111222222 566777777543     46667652      12223322222111111122222  5


Q ss_pred             CEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEccccc
Q 016877          276 DRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTE  351 (381)
Q Consensus       276 ~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~  351 (381)
                      +++++.|+.++.                      +..|| .+..|..+..+..........+...++++++.|+.++
T Consensus       162 ~~~l~s~s~d~~----------------------i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~  216 (345)
T 3fm0_A          162 QELLASASYDDT----------------------VKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDR  216 (345)
T ss_dssp             SSCEEEEETTSC----------------------EEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CCEEEEEeCCCc----------------------EEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCC
Confidence            667777776543                      55565 5666654433322112211112223567777777653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=96.02  E-value=0.16  Score=43.65  Aligned_cols=240  Identities=7%  Similarity=-0.076  Sum_probs=111.6

Q ss_pred             ccCcceEeecCCCCCeEEccCCCCCCCCceEEE-ECCEEEEEecCCCCCCcccceEEEeCCC-CeEecCCCCCCCCccce
Q 016877           87 ILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQ-IKNLLYVFAGYGSIDYVHSHVDIYNFTD-NTWGGRFDMPREMAHSH  164 (381)
Q Consensus        87 ~~~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~~~~~~~~r~~  164 (381)
                      .....++.+|..+.+...+...+  ..-.++.. -+++.+++++.       ..++++|+.+ .+...+...+.. ....
T Consensus        19 ~~~~~i~~~d~~~~~~~~~~~~~--~~v~~~~~spdg~~l~~~~~-------~~i~~~d~~~~~~~~~~~~~~~~-~~~~   88 (297)
T 2ojh_A           19 SMRSSIEIFNIRTRKMRVVWQTP--ELFEAPNWSPDGKYLLLNSE-------GLLYRLSLAGDPSPEKVDTGFAT-ICNN   88 (297)
T ss_dssp             CCCEEEEEEETTTTEEEEEEEES--SCCEEEEECTTSSEEEEEET-------TEEEEEESSSCCSCEECCCTTCC-CBCS
T ss_pred             CcceeEEEEeCCCCceeeeccCC--cceEeeEECCCCCEEEEEcC-------CeEEEEeCCCCCCceEecccccc-cccc
Confidence            34457888888887765544321  11122222 24555555541       3589999998 776665433311 1111


Q ss_pred             EEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCE-EEEEccCCCCCCCCCccce
Q 016877          165 LGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGR-LHVMGGSGENRYTPEVDHW  242 (381)
Q Consensus       165 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-lyv~GG~~~~~~~~~~~~~  242 (381)
                      .....-+++.+++++.....    ...++.+|..+..-..+.....   ...+... +++ |++.+..+.     ....|
T Consensus        89 ~~~~spdg~~l~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~~~~-----~~~l~  156 (297)
T 2ojh_A           89 DHGISPDGALYAISDKVEFG----KSAIYLLPSTGGTPRLMTKNLP---SYWHGWSPDGKSFTYCGIRDQ-----VFDIY  156 (297)
T ss_dssp             CCEECTTSSEEEEEECTTTS----SCEEEEEETTCCCCEECCSSSS---EEEEEECTTSSEEEEEEEETT-----EEEEE
T ss_pred             ceEECCCCCEEEEEEeCCCC----cceEEEEECCCCceEEeecCCC---ccceEECCCCCEEEEEECCCC-----ceEEE
Confidence            11222345555555432221    4679999988877555543321   2222222 344 544443221     23444


Q ss_pred             EeeeecCCccCCceEEecCCCCCCcceeEE-EeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeE
Q 016877          243 SLAVKDGKPLEKEWRTEIPIPRGGPHRACV-VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWK  320 (381)
Q Consensus       243 ~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~  320 (381)
                      .+     +..+.+...+...+...  ..++ .-+++.+++.+....                   ...+|.++ ......
T Consensus       157 ~~-----~~~~~~~~~~~~~~~~~--~~~~~s~dg~~l~~~~~~~~-------------------~~~i~~~~~~~~~~~  210 (297)
T 2ojh_A          157 SM-----DIDSGVETRLTHGEGRN--DGPDYSPDGRWIYFNSSRTG-------------------QMQIWRVRVDGSSVE  210 (297)
T ss_dssp             EE-----ETTTCCEEECCCSSSCE--EEEEECTTSSEEEEEECTTS-------------------SCEEEEEETTSSCEE
T ss_pred             EE-----ECCCCcceEcccCCCcc--ccceECCCCCEEEEEecCCC-------------------CccEEEECCCCCCcE
Confidence            43     24444444443322211  1222 225554444432211                   23578887 555555


Q ss_pred             EcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEe
Q 016877          321 VLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLN  378 (381)
Q Consensus       321 ~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i  378 (381)
                      .+....   ..........+++.+++++........ .......++++|+++++...+
T Consensus       211 ~~~~~~---~~~~~~~~s~dg~~l~~~~~~~~~~~~-~~~~~~~l~~~d~~~~~~~~~  264 (297)
T 2ojh_A          211 RITDSA---YGDWFPHPSPSGDKVVFVSYDADVFDH-PRDLDVRVQLMDMDGGNVETL  264 (297)
T ss_dssp             ECCCCS---EEEEEEEECTTSSEEEEEEEETTCCSC-CSSEEEEEEEEETTSCSCEEE
T ss_pred             EEecCC---cccCCeEECCCCCEEEEEEcCCCCCcc-cccCceEEEEEecCCCCceee
Confidence            554321   111111122356666666554221000 000013589999988776554

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=95.97  E-value=0.17  Score=44.84  Aligned_cols=69  Identities=14%  Similarity=0.199  Sum_probs=37.3

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC---CEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG---RYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~---~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +.+++.|+.+      ..+.++|+.+.+|..+..+... ...-.+++...   +.+++.|+.++        .+..+|..
T Consensus        71 ~~~l~s~s~D------~~v~iWd~~~~~~~~~~~~~~h-~~~V~~v~~~p~~~g~~lasgs~D~--------~i~lwd~~  135 (316)
T 3bg1_A           71 GNILASCSYD------RKVIIWREENGTWEKSHEHAGH-DSSVNSVCWAPHDYGLILACGSSDG--------AISLLTYT  135 (316)
T ss_dssp             SSCEEEEETT------SCEEEECCSSSCCCEEEEECCC-SSCCCEEEECCTTTCSCEEEECSSS--------CEEEEEEC
T ss_pred             CCEEEEEECC------CEEEEEECCCCcceEEEEccCC-CCceEEEEECCCCCCcEEEEEcCCC--------CEEEEecC
Confidence            5677777765      2477889888776554322211 01112333332   45677776544        35667766


Q ss_pred             CC-cEEeC
Q 016877          199 TK-KWQDL  205 (381)
Q Consensus       199 ~~-~W~~~  205 (381)
                      +. .|...
T Consensus       136 ~~~~~~~~  143 (316)
T 3bg1_A          136 GEGQWEVK  143 (316)
T ss_dssp             SSSCEEEC
T ss_pred             CCCCccee
Confidence            54 46543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.82  Score=40.56  Aligned_cols=197  Identities=12%  Similarity=0.141  Sum_probs=89.5

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCC--CeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTD--NTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      +++.++.|+.+.      .+.++|...  ..++.+..+... ...-.+++. -++.+++.|+.++        .+..+|.
T Consensus       118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~--------~i~iW~~  182 (330)
T 2hes_X          118 DGYYLATCSRDK------SVWIWETDESGEEYECISVLQEH-SQDVKHVIWHPSEALLASSSYDD--------TVRIWKD  182 (330)
T ss_dssp             TSCEEEEEETTS------CEEEEECCTTCCCCEEEEEECCC-SSCEEEEEECSSSSEEEEEETTS--------CEEEEEE
T ss_pred             CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEEeccC-CCceEEEEECCCCCEEEEEcCCC--------eEEEEEC
Confidence            456777777642      477788742  234433222221 011122333 2456677776544        3666777


Q ss_pred             CCCcEEeCCCCCC-CCcccEEEEEC---CEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCC--CCcceeE
Q 016877          198 ETKKWQDLPPLPV-PRYAPATQLWR---GRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPR--GGPHRAC  271 (381)
Q Consensus       198 ~~~~W~~~~~~p~-~r~~~~~~~~~---~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~--~~~~~~~  271 (381)
                      .+..|+.+..+.. ...-.++....   +..++.|+.++     .+..|++.... ......|.....++.  ...-.++
T Consensus       183 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~-----~v~iw~~~~~~-~~~~~~~~~~~~~~~~h~~~v~~v  256 (330)
T 2hes_X          183 YDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDS-----TVRVWKYMGDD-EDDQQEWVCEAILPDVHKRQVYNV  256 (330)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTS-----CEEEEEEEEEC-TTSCEEEEEEEECCSCCSSCEEEE
T ss_pred             CCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCC-----eEEEEEecCCC-ccccceeEEeeecccccccceEEE
Confidence            7766665543321 11111222222   34556665433     56777754211 112334555443332  1111122


Q ss_pred             EEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEE--E--CCEEEEE
Q 016877          272 VVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVL--V--NNSIVIV  346 (381)
Q Consensus       272 ~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~--~--~~~l~v~  346 (381)
                      +...+.+++.||.++.                      +..|| .+..|+.+..............+.  .  ++.+++.
T Consensus       257 ~~s~~~~l~s~~~dg~----------------------v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las  314 (330)
T 2hes_X          257 AWGFNGLIASVGADGV----------------------LAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILAT  314 (330)
T ss_dssp             EECTTSCEEEEETTSC----------------------EEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEE
T ss_pred             EEcCCCEEEEEeCCCE----------------------EEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEE
Confidence            2224456666776533                      56666 566675543221111110111122  2  4678888


Q ss_pred             cccccccCCceeeeeecceEEEEcCC
Q 016877          347 GGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       347 GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                      |+.++            .+.++|+++
T Consensus       315 ~s~Dg------------~v~~W~~~~  328 (330)
T 2hes_X          315 GGDDG------------IVNFWSLEK  328 (330)
T ss_dssp             EETTS------------EEEEEEC--
T ss_pred             ecCCC------------cEEEEEecc
Confidence            87664            366777653

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.84  E-value=0.84  Score=39.84  Aligned_cols=143  Identities=13%  Similarity=0.036  Sum_probs=66.1

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++.+.+.|+.++     .+..||..++.  ..+.. ....-..+..... .....+ .....+..+|..+.+-...  +.
T Consensus        34 ~~~~l~s~~~dg-----~i~iw~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~s~-~~d~~i~vwd~~~~~~~~~--~~  104 (312)
T 4ery_A           34 NGEWLASSSADK-----LIKIWGAYDGKFEKTISG-HKLGISDVAWSSDSNLLVSA-SDDKTLKIWDVSSGKCLKT--LK  104 (312)
T ss_dssp             TSSEEEEEETTS-----CEEEEETTTCCEEEEECC-CSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCEEEE--EE
T ss_pred             CCCEEEEeeCCC-----eEEEEeCCCcccchhhcc-CCCceEEEEEcCCCCEEEEE-CCCCEEEEEECCCCcEEEE--Ec
Confidence            456667776555     56778887766  22322 1111111111000 000000 1223566777766543221  11


Q ss_pred             CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCC
Q 016877          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQC  185 (381)
Q Consensus       110 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~  185 (381)
                      .......++.+  ++.+++.|+.++      .+.+||+.+.+-.. +.....    .-.+++. .++.+++.|+.++   
T Consensus       105 ~~~~~v~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d~---  171 (312)
T 4ery_A          105 GHSNYVFCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDG---  171 (312)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEEECCCSS----CEEEEEECTTSSEEEEEETTS---
T ss_pred             CCCCCEEEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEEecCCCC----cEEEEEEcCCCCEEEEEeCCC---
Confidence            11111122222  456677777642      47888988765332 211111    1122333 2456667776543   


Q ss_pred             CCCcceEEEEECCCCcE
Q 016877          186 RGPTAHTFVLDTETKKW  202 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~W  202 (381)
                           .+..||..+.+-
T Consensus       172 -----~i~~wd~~~~~~  183 (312)
T 4ery_A          172 -----LCRIWDTASGQC  183 (312)
T ss_dssp             -----CEEEEETTTCCE
T ss_pred             -----cEEEEECCCCce
Confidence                 378899887654

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.82  E-value=0.24  Score=45.71  Aligned_cols=98  Identities=14%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             cceEeecCCCCCeEEccCCC---CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccce
Q 016877           90 ATFQDLPAPELKWEKMKAAP---VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSH  164 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p---~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~  164 (381)
                      ..+..+|..+.+.....+..   .+......+.+  ++.+++.++.+      ..+.+||+.+.+-...-....   ..-
T Consensus       144 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~~~~---~~~  214 (433)
T 3bws_A          144 EGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVDLTG---KWS  214 (433)
T ss_dssp             SSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEECSS---SSE
T ss_pred             CeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEcCCC---CCe
Confidence            35888888877765433221   11111222333  67888888753      358899988765433211111   112


Q ss_pred             EEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe
Q 016877          165 LGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD  204 (381)
Q Consensus       165 ~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~  204 (381)
                      .+++..  ++.+|+.+..+        ..+.+||+.+.+...
T Consensus       215 ~~~~~~~~~~~l~~~~~~~--------~~i~~~d~~~~~~~~  248 (433)
T 3bws_A          215 KILLYDPIRDLVYCSNWIS--------EDISVIDRKTKLEIR  248 (433)
T ss_dssp             EEEEEETTTTEEEEEETTT--------TEEEEEETTTTEEEE
T ss_pred             eEEEEcCCCCEEEEEecCC--------CcEEEEECCCCcEEE
Confidence            233333  45677776432        458999998876543

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.81  E-value=0.08  Score=47.94  Aligned_cols=134  Identities=10%  Similarity=0.020  Sum_probs=62.1

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCe-EecCCCCCCCCccceEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~~~r~~~~~  167 (381)
                      .+..+|..+..|..+..+........++.+  ++.+++.|+.+      ..+.+||..+.+ |.....+... ...-.++
T Consensus        34 ~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~~~~~~-~~~v~~~  106 (377)
T 3dwl_C           34 QVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQD------RNAYVYEKRPDGTWKQTLVLLRL-NRAATFV  106 (377)
T ss_dssp             CBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETT------SSEEEC------CCCCEEECCCC-SSCEEEE
T ss_pred             EEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCC------CeEEEEEcCCCCceeeeeEeccc-CCceEEE
Confidence            566777777777776665543333333333  45677777754      247888888776 5543333221 1112223


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCc-EEeCCCCCC--CCcccEEEEE-CCEEEEEccCCCCCCCCCccce
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-WQDLPPLPV--PRYAPATQLW-RGRLHVMGGSGENRYTPEVDHW  242 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~--~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~  242 (381)
                      +.. ++++++.|+.++        .+..||..+.+ |..+..+..  ...-.+++.. ++++++.|+.++     .+..|
T Consensus       107 ~~~~~~~~l~~~~~d~--------~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~-----~i~iw  173 (377)
T 3dwl_C          107 RWSPNEDKFAVGSGAR--------VISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADR-----KAYVL  173 (377)
T ss_dssp             ECCTTSSCCEEEESSS--------CEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSS-----CEEEE
T ss_pred             EECCCCCEEEEEecCC--------eEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCC-----EEEEE
Confidence            332 455666666433        36777777654 323322222  2222233332 556777776543     45566


Q ss_pred             Ee
Q 016877          243 SL  244 (381)
Q Consensus       243 ~~  244 (381)
                      ++
T Consensus       174 d~  175 (377)
T 3dwl_C          174 SA  175 (377)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=95.72  E-value=0.5  Score=43.77  Aligned_cols=228  Identities=9%  Similarity=0.003  Sum_probs=110.7

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|.....-..+..-.   .......+  +++.+++++.+...   ..++++|+.+.+...+...+.    ...+.
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~---~~v~~~~~Spdg~~la~~s~~~~~---~~i~~~d~~tg~~~~l~~~~~----~~~~~  228 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSP---QPLMSPAWSPDGSKLAYVTFESGR---SALVIQTLANGAVRQVASFPR----HNGAP  228 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEES---SCEEEEEECTTSSEEEEEECTTSS---CEEEEEETTTCCEEEEECCSS----CEEEE
T ss_pred             ceEEEEcCCCCCCEEEeCCC---CcceeeEEcCCCCEEEEEEecCCC---cEEEEEECCCCcEEEeecCCC----cccCE
Confidence            35666776554433332211   11112222  55555555544322   469999999988776654332    12233


Q ss_pred             EEe-CC-EEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          168 VTD-GR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       168 ~~~-~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      +.. ++ +|++.+..++      ...++.+|+.+.+...+...+.  .....+. -+++.+++++...    .....|.+
T Consensus       229 ~~spdg~~la~~~~~~g------~~~i~~~d~~~~~~~~l~~~~~--~~~~~~~spdg~~l~~~s~~~----g~~~i~~~  296 (415)
T 2hqs_A          229 AFSPDGSKLAFALSKTG------SLNLYVMDLASGQIRQVTDGRS--NNTEPTWFPDSQNLAFTSDQA----GRPQVYKV  296 (415)
T ss_dssp             EECTTSSEEEEEECTTS------SCEEEEEETTTCCEEECCCCSS--CEEEEEECTTSSEEEEEECTT----SSCEEEEE
T ss_pred             EEcCCCCEEEEEEecCC------CceEEEEECCCCCEEeCcCCCC--cccceEECCCCCEEEEEECCC----CCcEEEEE
Confidence            332 34 4555554333      3569999999988776654321  1112222 2455444443221    11233332


Q ss_pred             eeecCCccCCceEEecCCCCCCcceeEEE--eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEE
Q 016877          245 AVKDGKPLEKEWRTEIPIPRGGPHRACVV--VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKV  321 (381)
Q Consensus       245 ~~~~~~~~~~~W~~~~~~p~~~~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~  321 (381)
                           |..+.+-+.+...  .. ....+.  -+++.+++++....                   ...++.+| .+.....
T Consensus       297 -----d~~~~~~~~l~~~--~~-~~~~~~~spdG~~l~~~~~~~g-------------------~~~i~~~d~~~~~~~~  349 (415)
T 2hqs_A          297 -----NINGGAPQRITWE--GS-QNQDADVSSDGKFMVMVSSNGG-------------------QQHIAKQDLATGGVQV  349 (415)
T ss_dssp             -----ETTSSCCEECCCS--SS-EEEEEEECTTSSEEEEEEECSS-------------------CEEEEEEETTTCCEEE
T ss_pred             -----ECCCCCEEEEecC--CC-cccCeEECCCCCEEEEEECcCC-------------------ceEEEEEECCCCCEEE
Confidence                 2334333322111  11 112222  35665555554321                   12478888 6666665


Q ss_pred             cCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEee
Q 016877          322 LPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNA  379 (381)
Q Consensus       322 i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~  379 (381)
                      +....    .........+++.+++++.+...         ..++.+|+++...+.+.
T Consensus       350 l~~~~----~~~~~~~spdg~~l~~~s~~~~~---------~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          350 LSSTF----LDETPSLAPNGTMVIYSSSQGMG---------SVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             CCCSS----SCEEEEECTTSSEEEEEEEETTE---------EEEEEEETTSCCEEECC
T ss_pred             ecCCC----CcCCeEEcCCCCEEEEEEcCCCc---------cEEEEEECCCCcEEEee
Confidence            54321    11222244467777777654321         25899998877665543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.67  E-value=0.23  Score=46.14  Aligned_cols=104  Identities=10%  Similarity=0.060  Sum_probs=55.8

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEE
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVL  195 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~y  195 (381)
                      .+...++..++.|+.+      ..+.+||..+.+-...  +...  .........++.+++.|+.++        .+..|
T Consensus       137 ~~~~~d~~~l~~g~~d------g~i~iwd~~~~~~~~~--~~~h--~~~v~~l~~~~~~l~sg~~dg--------~i~vw  198 (435)
T 1p22_A          137 YCLQYDDQKIVSGLRD------NTIKIWDKNTLECKRI--LTGH--TGSVLCLQYDERVIITGSSDS--------TVRVW  198 (435)
T ss_dssp             EEEECCSSEEEEEESS------SCEEEEESSSCCEEEE--ECCC--SSCEEEEECCSSEEEEEETTS--------CEEEE
T ss_pred             EEEEECCCEEEEEeCC------CeEEEEeCCCCeEEEE--EcCC--CCcEEEEEECCCEEEEEcCCC--------eEEEE
Confidence            3445577788888765      3478889877654332  1111  112233334677777777544        37888


Q ss_pred             ECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEe
Q 016877          196 DTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       196 d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      |..+.+-...  +......-.....++..++.|+.++     .+..|++
T Consensus       199 d~~~~~~~~~--~~~h~~~v~~l~~~~~~l~s~s~dg-----~i~vwd~  240 (435)
T 1p22_A          199 DVNTGEMLNT--LIHHCEAVLHLRFNNGMMVTCSKDR-----SIAVWDM  240 (435)
T ss_dssp             ESSSCCEEEE--ECCCCSCEEEEECCTTEEEEEETTS-----CEEEEEC
T ss_pred             ECCCCcEEEE--EcCCCCcEEEEEEcCCEEEEeeCCC-----cEEEEeC
Confidence            8887653222  1111111222333555667766543     4556654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=95.56  E-value=0.18  Score=43.18  Aligned_cols=106  Identities=11%  Similarity=-0.048  Sum_probs=57.5

Q ss_pred             cceEeecCCC-CCeEEccCCCC-CCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPE-LKWEKMKAAPV-PRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~-~~W~~l~~~p~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..++.+|..+ .+...+...+. .........-+++.++++......  ...++.+|..+..-..+.....     ...+
T Consensus        62 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~-----~~~~  134 (297)
T 2ojh_A           62 GLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFG--KSAIYLLPSTGGTPRLMTKNLP-----SYWH  134 (297)
T ss_dssp             TEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTS--SCEEEEEETTCCCCEECCSSSS-----EEEE
T ss_pred             CeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCC--cceEEEEECCCCceEEeecCCC-----ccce
Confidence            4678888888 77666554332 121222233355555565533222  2458899988776555433221     2223


Q ss_pred             EEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC
Q 016877          168 VTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL  208 (381)
Q Consensus       168 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~  208 (381)
                      +..  +..|++.++.++      ...+|.+|..+.....+...
T Consensus       135 ~~spdg~~l~~~~~~~~------~~~l~~~~~~~~~~~~~~~~  171 (297)
T 2ojh_A          135 GWSPDGKSFTYCGIRDQ------VFDIYSMDIDSGVETRLTHG  171 (297)
T ss_dssp             EECTTSSEEEEEEEETT------EEEEEEEETTTCCEEECCCS
T ss_pred             EECCCCCEEEEEECCCC------ceEEEEEECCCCcceEcccC
Confidence            332  345555554332      34688888888777666543

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=95.56  E-value=1.3  Score=40.11  Aligned_cols=106  Identities=10%  Similarity=0.115  Sum_probs=51.9

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCe------Ee-cCCCCCCCCccceEEEEEeC--CEEEEEcCCCCCCCCCCcceE
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNT------WG-GRFDMPREMAHSHLGMVTDG--RYIYVVTGQYGPQCRGPTAHT  192 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~------W~-~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~  192 (381)
                      +.+++.|+.+      ..+.+||..+.+      -. .+...... ...-.+++...  +.+++.|+.++        .+
T Consensus       126 ~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~l~~~~~dg--------~v  190 (416)
T 2pm9_A          126 DNVLASGGNN------GEIFIWDMNKCTESPSNYTPLTPGQSMSS-VDEVISLAWNQSLAHVFASAGSSN--------FA  190 (416)
T ss_dssp             TTBEEEECSS------SCEEBCBTTTTSSCTTTCCCBCCCCSCCS-SCCCCEEEECSSCTTEEEEESSSS--------CE
T ss_pred             CCEEEEEcCC------CeEEEEECCCCccccccccccccccccCC-CCCeeEEEeCCCCCcEEEEEcCCC--------CE
Confidence            5677777754      247788887764      11 11111111 11122344432  46777776543        48


Q ss_pred             EEEECCCCcEEeCCCCCC-----CCcccEEEEEC--CEEEEEccCCCCCCCCCccceEe
Q 016877          193 FVLDTETKKWQDLPPLPV-----PRYAPATQLWR--GRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       193 ~~yd~~~~~W~~~~~~p~-----~r~~~~~~~~~--~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ..||..+.+-...-..+.     ...-.+++...  ..+++.|+.++.  ...+..|++
T Consensus       191 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~--~~~i~~~d~  247 (416)
T 2pm9_A          191 SIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN--DPSILIWDL  247 (416)
T ss_dssp             EEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS--SCCCCEEET
T ss_pred             EEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC--CceEEEEeC
Confidence            889998876433222221     12222333332  247777665431  124566654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=95.55  E-value=0.33  Score=41.98  Aligned_cols=154  Identities=13%  Similarity=0.049  Sum_probs=87.1

Q ss_pred             cceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccc
Q 016877          162 HSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDH  241 (381)
Q Consensus       162 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~  241 (381)
                      -+..++...++.+|+..|.++        .+.++|+++.+=...- ++..-....++..+++||+....++     ....
T Consensus        55 ~ftqGL~~~~~~Ly~stG~~g--------~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~-----~v~V  120 (268)
T 3nok_A           55 AFTQGLVFHQGHFFESTGHQG--------TLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEG-----LLFT  120 (268)
T ss_dssp             CCEEEEEEETTEEEEEETTTT--------EEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSC-----EEEE
T ss_pred             cccceEEEECCEEEEEcCCCC--------EEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCC-----EEEE
Confidence            344667778999999988654        2889999987643322 4444445567788999999965332     2222


Q ss_pred             eEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCe-
Q 016877          242 WSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKW-  319 (381)
Q Consensus       242 ~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W-  319 (381)
                      |       |+.+.+-..  ..+....+.+++..+++||+..|.                       +.++.+| ++.+- 
T Consensus       121 ~-------D~~Tl~~~~--ti~~~~eGwGLt~Dg~~L~vSdGs-----------------------~~l~~iDp~T~~v~  168 (268)
T 3nok_A          121 W-------SGMPPQRER--TTRYSGEGWGLCYWNGKLVRSDGG-----------------------TMLTFHEPDGFALV  168 (268)
T ss_dssp             E-------ETTTTEEEE--EEECSSCCCCEEEETTEEEEECSS-----------------------SEEEEECTTTCCEE
T ss_pred             E-------ECCcCcEEE--EEeCCCceeEEecCCCEEEEECCC-----------------------CEEEEEcCCCCeEE
Confidence            2       243333322  222222234677778899998762                       2478887 55432 


Q ss_pred             EEcC--CCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          320 KVLP--SMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       320 ~~i~--~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                      ..+.  .-+.+.... --+...+++||+-- +.           .++|.+.|+++++
T Consensus       169 ~~I~V~~~g~~v~~l-NeLe~~dG~lyanv-w~-----------s~~I~vIDp~TG~  212 (268)
T 3nok_A          169 GAVQVKLRGQPVELI-NELECANGVIYANI-WH-----------SSDVLEIDPATGT  212 (268)
T ss_dssp             EEEECEETTEECCCE-EEEEEETTEEEEEE-TT-----------CSEEEEECTTTCB
T ss_pred             EEEEeCCCCcccccc-cccEEeCCEEEEEE-CC-----------CCeEEEEeCCCCc
Confidence            1221  111111111 12344588888532 11           2368888888765

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=95.53  E-value=1.7  Score=42.62  Aligned_cols=241  Identities=10%  Similarity=-0.056  Sum_probs=113.6

Q ss_pred             cceEeecCC--C-CCeEEccCCCCC----CCCceEEEECCEEEEEecCCC----CCCcccceEEEeCCC------CeEec
Q 016877           90 ATFQDLPAP--E-LKWEKMKAAPVP----RLDGAAIQIKNLLYVFAGYGS----IDYVHSHVDIYNFTD------NTWGG  152 (381)
Q Consensus        90 ~~~~~~~~~--~-~~W~~l~~~p~~----r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~yd~~~------~~W~~  152 (381)
                      ..++.++..  . ..-.++...+..    +....+..-+++.+++...+.    ......+++++|+.+      .+-+.
T Consensus       102 ~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  181 (662)
T 3azo_A          102 QRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRE  181 (662)
T ss_dssp             CCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEE
T ss_pred             CeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeE
Confidence            467777776  3 555666654321    111122233554444443321    112235699999988      66665


Q ss_pred             CC-CCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC-CC---cEEeCCCCCCCCcccEEEE-ECCEEEE
Q 016877          153 RF-DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE-TK---KWQDLPPLPVPRYAPATQL-WRGRLHV  226 (381)
Q Consensus       153 ~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~-~~---~W~~~~~~p~~r~~~~~~~-~~~~lyv  226 (381)
                      +. .-+.   ........-+++..++...+.....-...+++++|.. +.   ..+.+..-. ......... -++++|+
T Consensus       182 l~~~~~~---~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~  257 (662)
T 3azo_A          182 LSDDAHR---FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIV  257 (662)
T ss_dssp             SSCSCSS---EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEE
T ss_pred             EEecCCC---cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEE
Confidence            54 2221   1111122234443333332221110113689999998 56   333332211 111122222 2677776


Q ss_pred             EccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCc-------ceeEEEe-CCEEEEEccCCCCCCCCCCCCccc
Q 016877          227 MGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGP-------HRACVVV-DDRLLVIGGQEGDFMAKPGSPIFK  298 (381)
Q Consensus       227 ~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~-------~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~  298 (381)
                      .+..++     ....|.     +|..+.+++.+.+......       ...++.. ++++++.+.. +            
T Consensus       258 ~~~~~~-----~~~l~~-----~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~------------  314 (662)
T 3azo_A          258 ATDRTG-----WWNLHR-----VDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G------------  314 (662)
T ss_dssp             EECTTS-----SCEEEE-----ECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S------------
T ss_pred             EECCCC-----CeEEEE-----EECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-C------------
Confidence            654332     122333     3455677776543221110       1123333 6777776654 2            


Q ss_pred             cccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEE-EEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceE
Q 016877          299 CSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAW-VLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAV  376 (381)
Q Consensus       299 ~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~-~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~  376 (381)
                              ...+|.+| ++...+.+.. +  .... ..+ ..-++.+++..+....         ..++|.+|+++++.+
T Consensus       315 --------~~~l~~~d~~~~~~~~l~~-~--~~~~-~~~~s~~~~~~~~~~~~~~~---------~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          315 --------AAVLGILDPESGELVDAAG-P--WTEW-AATLTVSGTRAVGVAASPRT---------AYEVVELDTVTGRAR  373 (662)
T ss_dssp             --------SCEEEEEETTTTEEEECCS-S--CCEE-EEEEEEETTEEEEEEEETTE---------EEEEEEEETTTCCEE
T ss_pred             --------ccEEEEEECCCCcEEEecC-C--CCeE-EEEEecCCCEEEEEEcCCCC---------CCEEEEEECCCCceE
Confidence                    23578777 5565666532 1  1111 122 3345666666543322         236888898888776


Q ss_pred             Ee
Q 016877          377 LN  378 (381)
Q Consensus       377 ~i  378 (381)
                      .+
T Consensus       374 ~l  375 (662)
T 3azo_A          374 TI  375 (662)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=95.50  E-value=1.2  Score=39.31  Aligned_cols=99  Identities=13%  Similarity=0.038  Sum_probs=52.1

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEE-EC-CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC------
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQ-IK-NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM------  160 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~------  160 (381)
                      ...+..+|..+.+-...-+..  ..-..++. -+ +++|+.+..+      ..+.++|+.+.+-...-+.+...      
T Consensus        68 ~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  139 (353)
T 3vgz_A           68 GGVVYRLDPVTLEVTQAIHND--LKPFGATINNTTQTLWFGNTVN------SAVTAIDAKTGEVKGRLVLDDRKRTEEVR  139 (353)
T ss_dssp             SEEEEEECTTTCCEEEEEEES--SCCCSEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEEESCCCCCCSSCC
T ss_pred             CccEEEEcCCCCeEEEEEecC--CCcceEEECCCCCEEEEEecCC------CEEEEEeCCCCeeEEEEecCCCccccccC
Confidence            346788888777543322221  11223333 33 4688877543      35899999887643221121100      


Q ss_pred             ccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          161 AHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       161 ~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      +.....++.  .++.+|+.+...       ...++.+|+++.+-
T Consensus       140 ~~~~~~~~~s~dg~~l~~~~~~~-------~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          140 PLQPRELVADDATNTVYISGIGK-------ESVIWVVDGGNIKL  176 (353)
T ss_dssp             CCEEEEEEEETTTTEEEEEEESS-------SCEEEEEETTTTEE
T ss_pred             CCCCceEEECCCCCEEEEEecCC-------CceEEEEcCCCCce
Confidence            011233444  346688775211       24589999987754

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.46  E-value=0.23  Score=43.62  Aligned_cols=95  Identities=11%  Similarity=0.068  Sum_probs=46.6

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++..+++|+.+      ..+.+||..+.+......+.... ..-.+++.. +++.++.|+.+        ..+..||..+
T Consensus       108 ~~~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~~d--------g~v~~~d~~~  172 (337)
T 1gxr_A          108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSA-PACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSS-SCEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEEcCC------CcEEEEECCCCCcceeeecccCC-CceEEEEECCCCCEEEEEeCC--------CcEEEEeCCC
Confidence            45666666653      35888999887754433222211 112233333 45566666543        3488899987


Q ss_pred             CcEEeCCCCCCCCcccEEEEE-CCEEEEEccCC
Q 016877          200 KKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSG  231 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~  231 (381)
                      .+....-... ...-.+++.. +++.++.++.+
T Consensus       173 ~~~~~~~~~~-~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          173 QTLVRQFQGH-TDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             TEEEEEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             Cceeeeeecc-cCceEEEEECCCCCEEEEEecC
Confidence            7543321111 1112222222 55566666643

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=95.40  E-value=1.1  Score=38.39  Aligned_cols=167  Identities=13%  Similarity=0.040  Sum_probs=81.1

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCC-CCCCCceeEEee--ecccccccccCcceEeecCCCCCeEEccCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNN-GPQKGENIGVKT--KKDVVPKRILPATFQDLPAPELKWEKMKAA  108 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~  108 (381)
                      ++.||+....+     +.+..||+. +. ..++.. ......+++...  ..+...  .....+.++|+. .++.... +
T Consensus        30 ~g~l~v~~~~~-----~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~v~~~d~~-g~~~~~~-~   99 (300)
T 2qc5_A           30 DGKVWFTQHKA-----NKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTE--NGANKIGKLSKK-GGFTEYP-L   99 (300)
T ss_dssp             TSCEEEEETTT-----TEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECTT-SCEEEEE-C
T ss_pred             CCCEEEEcCCC-----CeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEe--cCCCeEEEECCC-CCeEEec-C
Confidence            67888876422     367888888 55 332221 111122222211  122211  123468888887 6665432 2


Q ss_pred             CCCCCC-ceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCC
Q 016877          109 PVPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQC  185 (381)
Q Consensus       109 p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~  185 (381)
                      +..... ..++.. ++.+|+.....      ..+.+||+. .+..... ++... .....++. .++++|+....     
T Consensus       100 ~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~~-~~~~~i~~d~~g~l~v~~~~-----  165 (300)
T 2qc5_A          100 PQPDSGPYGITEGLNGDIWFTQLNG------DRIGKLTAD-GTIYEYD-LPNKG-SYPAFITLGSDNALWFTENQ-----  165 (300)
T ss_dssp             SSTTCCEEEEEECSTTCEEEEETTT------TEEEEECTT-SCEEEEE-CSSTT-CCEEEEEECTTSSEEEEETT-----
T ss_pred             CCCCCCCccceECCCCCEEEEccCC------CeEEEECCC-CCEEEcc-CCCCC-CCceeEEECCCCCEEEEecC-----
Confidence            211122 233332 56888875321      348889987 5554332 22111 22234444 35678886421     


Q ss_pred             CCCcceEEEEECCCCcEEeCCCCCCCCcc-cEEEEE-CCEEEEEc
Q 016877          186 RGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMG  228 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~G  228 (381)
                         ...+++||+ +.+..... ++..... ..++.- ++.||+..
T Consensus       166 ---~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  205 (300)
T 2qc5_A          166 ---NNSIGRITN-TGKLEEYP-LPTNAAAPVGITSGNDGALWFVE  205 (300)
T ss_dssp             ---TTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             ---CCeEEEECC-CCcEEEee-CCCCCCCcceEEECCCCCEEEEc
Confidence               246899998 66665532 2211112 223332 56788774

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=95.40  E-value=0.75  Score=41.99  Aligned_cols=92  Identities=5%  Similarity=-0.030  Sum_probs=45.3

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLG  166 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~  166 (381)
                      ..+..+|..+.+-...  +........++.+  ++.+++.|+.+      ..+.+||+.+.+-.. +....    ..-.+
T Consensus       119 g~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~~~~~~l~s~s~d------~~i~iwd~~~~~~~~~~~~h~----~~v~~  186 (420)
T 3vl1_A          119 GDIKVLDSNFNLQREI--DQAHVSEITKLKFFPSGEALISSSQD------MQLKIWSVKDGSNPRTLIGHR----ATVTD  186 (420)
T ss_dssp             SCEEEECTTSCEEEEE--TTSSSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCCCEEEECCS----SCEEE
T ss_pred             CCEEEEeCCCcceeee--cccccCccEEEEECCCCCEEEEEeCC------CeEEEEeCCCCcCceEEcCCC----CcEEE
Confidence            3567777765543222  2222222222222  45667777654      258888987653211 11111    11223


Q ss_pred             EEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877          167 MVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       167 ~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      ++.. ++..++.|+.++        .+..||..+.+
T Consensus       187 ~~~~~~~~~l~s~~~d~--------~v~iwd~~~~~  214 (420)
T 3vl1_A          187 IAIIDRGRNVLSASLDG--------TIRLWECGTGT  214 (420)
T ss_dssp             EEEETTTTEEEEEETTS--------CEEEEETTTTE
T ss_pred             EEEcCCCCEEEEEcCCC--------cEEEeECCCCc
Confidence            3333 455566666443        37788887764

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.36  E-value=1.3  Score=38.69  Aligned_cols=123  Identities=7%  Similarity=-0.038  Sum_probs=60.3

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+.+......+...........+  ++..++.|+.+      ..+.+||..+.+....-....   ..-.++
T Consensus       119 ~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~~d~~~~~~~~~~~~~~---~~i~~~  189 (337)
T 1gxr_A          119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT---DGASCI  189 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEE
T ss_pred             CcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCceeeeeeccc---CceEEE
Confidence            4577788777664443333222222222222  45666677654      248889998876544221111   112233


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCC
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~  231 (381)
                      +.. ++..++.|+.+        ..+..||..+.+-...-..+  ..-.+++. -+++++++|+.+
T Consensus       190 ~~~~~~~~l~~~~~d--------g~i~~~d~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~  245 (337)
T 1gxr_A          190 DISNDGTKLWTGGLD--------NTVRSWDLREGRQLQQHDFT--SQIFSLGYCPTGEWLAVGMES  245 (337)
T ss_dssp             EECTTSSEEEEEETT--------SEEEEEETTTTEEEEEEECS--SCEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEecC--------CcEEEEECCCCceEeeecCC--CceEEEEECCCCCEEEEEcCC
Confidence            332 45566666533        45888998876533221211  12223333 255666676643

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=95.32  E-value=1  Score=40.11  Aligned_cols=102  Identities=15%  Similarity=0.088  Sum_probs=47.4

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEE-EeCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMV-TDGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.||.+      ..+.+||+.+..  ......+... ...-.++. ..++. ++.|+.+        ..+..||+
T Consensus       108 ~~~~l~s~~~d------~~v~iw~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~-l~s~s~d--------~~i~~wd~  171 (340)
T 1got_B          108 SGNYVACGGLD------NICSIYNLKTREGNVRVSRELAGH-TGYLSCCRFLDDNQ-IVTSSGD--------TTCALWDI  171 (340)
T ss_dssp             TSSEEEEEETT------CEEEEEETTTCSBSCEEEEEEECC-SSCEEEEEEEETTE-EEEEETT--------SCEEEEET
T ss_pred             CCCEEEEEeCC------CeEEEEECccCCCcceeEEEecCC-CccEEEEEECCCCc-EEEEECC--------CcEEEEEC
Confidence            45677777764      247778876542  1111111110 01111222 24555 4455433        34788998


Q ss_pred             CCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          198 ETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       198 ~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .+.+-...-.- ....-.+++. -++++++.|+.++     .+..|++
T Consensus       172 ~~~~~~~~~~~-h~~~v~~~~~~~~~~~l~sg~~d~-----~v~~wd~  213 (340)
T 1got_B          172 ETGQQTTTFTG-HTGDVMSLSLAPDTRLFVSGACDA-----SAKLWDV  213 (340)
T ss_dssp             TTTEEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CCCcEEEEEcC-CCCceEEEEECCCCCEEEEEeCCC-----cEEEEEC
Confidence            87754321111 1111122222 2566777777543     4566653

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=95.30  E-value=0.12  Score=52.23  Aligned_cols=97  Identities=11%  Similarity=0.096  Sum_probs=54.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eC--CEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DG--RYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~--~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.|+.+      ..+.+||...+++..+..+... ...-.+++. .+  +.+++.|+.++        .+..||.
T Consensus        20 dg~~latg~~d------g~I~vwd~~~~~~~~~~~l~~h-~~~V~~l~~s~~~~~~~l~s~s~Dg--------~I~vwd~   84 (753)
T 3jro_A           20 YGKRLATCSSD------KTIKIFEVEGETHKLIDTLTGH-EGPVWRVDWAHPKFGTILASCSYDG--------KVLIWKE   84 (753)
T ss_dssp             SSCCEEEEETT------TEEEEEEEETTEEEEEEEECCC-SSCEEEEEECCTTSCSEEEEEETTS--------CEEEEEE
T ss_pred             CCCeEEEEECC------CcEEEEecCCCCCccceeccCC-cCceEEEEecCCCCCCEEEEEeCCC--------eEEEEEC
Confidence            34566677654      2477888877777765544431 112223333 23  56677776544        3788888


Q ss_pred             CCCcEEeCCCCCCC-CcccEEEEE-C--CEEEEEccCCC
Q 016877          198 ETKKWQDLPPLPVP-RYAPATQLW-R--GRLHVMGGSGE  232 (381)
Q Consensus       198 ~~~~W~~~~~~p~~-r~~~~~~~~-~--~~lyv~GG~~~  232 (381)
                      .+.+|..+..+... ..-.+++.. +  +.+++.|+.++
T Consensus        85 ~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg  123 (753)
T 3jro_A           85 ENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDG  123 (753)
T ss_dssp             ETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             CCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCC
Confidence            88887666544322 222233332 2  56777776543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=95.27  E-value=1.9  Score=42.66  Aligned_cols=64  Identities=16%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             cceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCC-cEEeC
Q 016877          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETK-KWQDL  205 (381)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~-~W~~~  205 (381)
                      ..++++|+.+.+-..+...... ...-..++. -+++..+++..+...   ....++.+|+.+. ..+.+
T Consensus       235 ~~l~~~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~~~~~---~~~~v~~~d~~~g~~~~~~  300 (706)
T 2z3z_A          235 VTVGIYHLATGKTVYLQTGEPK-EKFLTNLSWSPDENILYVAEVNRAQ---NECKVNAYDAETGRFVRTL  300 (706)
T ss_dssp             EEEEEEETTTTEEEECCCCSCT-TCEEEEEEECTTSSEEEEEEECTTS---CEEEEEEEETTTCCEEEEE
T ss_pred             eEEEEEECCCCceEeeccCCCC-ceeEeeEEEECCCCEEEEEEeCCCC---CeeEEEEEECCCCceeeEE
Confidence            5699999998876665432111 122223333 244433333333221   2468999999988 66554

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.24  E-value=0.034  Score=50.46  Aligned_cols=96  Identities=14%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.+      ..+.+||..++.|+.+..+.... ..-.+++.. ++++++.|+.++        .+..||..+
T Consensus        22 ~g~~l~~~~~d------~~i~iw~~~~~~~~~~~~~~~h~-~~v~~~~~s~~~~~l~s~s~d~--------~v~vwd~~~   86 (377)
T 3dwl_C           22 QRTEFVTTTAT------NQVELYEQDGNGWKHARTFSDHD-KIVTCVDWAPKSNRIVTCSQDR--------NAYVYEKRP   86 (377)
T ss_dssp             SSSEEECCCSS------SCBCEEEEETTEEEECCCBCCCS-SCEEEEEECTTTCCEEEEETTS--------SEEEC----
T ss_pred             CCCEEEEecCC------CEEEEEEccCCceEEEEEEecCC-ceEEEEEEeCCCCEEEEEeCCC--------eEEEEEcCC
Confidence            45666777654      24778888888888876665421 122333333 456666776443        377888877


Q ss_pred             Cc-EEeCCCCC-CCCcccEEEEE-CCEEEEEccCC
Q 016877          200 KK-WQDLPPLP-VPRYAPATQLW-RGRLHVMGGSG  231 (381)
Q Consensus       200 ~~-W~~~~~~p-~~r~~~~~~~~-~~~lyv~GG~~  231 (381)
                      .. |.....+. ....-.+++.. ++++++.|+.+
T Consensus        87 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  121 (377)
T 3dwl_C           87 DGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGA  121 (377)
T ss_dssp             --CCCCEEECCCCSSCEEEEECCTTSSCCEEEESS
T ss_pred             CCceeeeeEecccCCceEEEEECCCCCEEEEEecC
Confidence            65 43322221 11122222222 45666666654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.22  E-value=0.088  Score=47.93  Aligned_cols=119  Identities=15%  Similarity=0.108  Sum_probs=61.0

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+.+-...-...  ..-.+++.. ++ .||+.++.+      ..+.++|+.+++....-..+.    .-.++
T Consensus        12 ~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~d------~~i~v~d~~~~~~~~~~~~~~----~v~~~   79 (391)
T 1l0q_A           12 DNISVIDVTSNKVTATIPVG--SNPMGAVISPDGTKVYVANAHS------NDVSIIDTATNNVIATVPAGS----SPQGV   79 (391)
T ss_dssp             TEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEEGGG------TEEEEEETTTTEEEEEEECSS----SEEEE
T ss_pred             CEEEEEECCCCeEEEEeecC--CCcceEEECCCCCEEEEECCCC------CeEEEEECCCCeEEEEEECCC----Cccce
Confidence            35777777766533221111  111222222 33 677777543      358899998887654322222    12233


Q ss_pred             EEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-C-CEEEEEccC
Q 016877          168 VTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-R-GRLHVMGGS  230 (381)
Q Consensus       168 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~  230 (381)
                      +..  ++.||+.+..        ...+.+||+.+.+-...-..  ......++.. + ..+|+.++.
T Consensus        80 ~~spdg~~l~~~~~~--------~~~v~v~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~  136 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMA--------SSTLSVIDTTSNTVAGTVKT--GKSPLGLALSPDGKKLYVTNNG  136 (391)
T ss_dssp             EECTTSSEEEEEETT--------TTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEETT
T ss_pred             EECCCCCEEEEEECC--------CCEEEEEECCCCeEEEEEeC--CCCcceEEECCCCCEEEEEeCC
Confidence            333  4457766542        24689999998765433221  2222333333 3 357677653

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=95.18  E-value=1.3  Score=37.60  Aligned_cols=170  Identities=14%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             cCEEEE-ecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEe--eecccccccccCcceEeecCCCCCeEEccCC
Q 016877           33 ADFFWA-SSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKAA  108 (381)
Q Consensus        33 ~~~ly~-~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~  108 (381)
                      ++.||+ ....+     +.+..||+.+.. ...+........+++..  +..+....   ...+..+|+.......+...
T Consensus        34 ~g~l~v~~~~~~-----~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~---~~~i~~~d~~~~~~~~~~~~  105 (270)
T 1rwi_B           34 AGNVYVTSEGMY-----GRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF---NNRVVTLAAGSNNQTVLPFD  105 (270)
T ss_dssp             TCCEEEEECSSS-----CEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET---TTEEEEECTTCSCCEECCCC
T ss_pred             CCCEEEEccCCC-----CcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC---CCEEEEEeCCCceEeeeecC
Confidence            568998 53322     356788887666 33332111122333322  22333222   44688888877654443211


Q ss_pred             CCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCC
Q 016877          109 PVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCR  186 (381)
Q Consensus       109 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~  186 (381)
                      .. ..-..++.. ++++|+....      ...+.++|..+...........   .....++.. ++++|+....      
T Consensus       106 ~~-~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~~------  169 (270)
T 1rwi_B          106 GL-NYPEGLAVDTQGAVYVADRG------NNRVVKLAAGSKTQTVLPFTGL---NDPDGVAVDNSGNVYVTDTD------  169 (270)
T ss_dssp             SC-SSEEEEEECTTCCEEEEEGG------GTEEEEECTTCCSCEECCCCSC---CSCCCEEECTTCCEEEEEGG------
T ss_pred             Cc-CCCcceEECCCCCEEEEECC------CCEEEEEECCCceeEeeccccC---CCceeEEEeCCCCEEEEECC------
Confidence            11 111233332 5678887542      2347888876655443221111   112234443 5678887431      


Q ss_pred             CCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEcc
Q 016877          187 GPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (381)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG  229 (381)
                        ...+.+||+.+..-........ ..-..+++- ++.+|+...
T Consensus       170 --~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~d~~g~l~v~~~  210 (270)
T 1rwi_B          170 --NNRVVKLEAESNNQVVLPFTDI-TAPWGIAVDEAGTVYVTEH  210 (270)
T ss_dssp             --GTEEEEECTTTCCEEECCCSSC-CSEEEEEECTTCCEEEEET
T ss_pred             --CCEEEEEecCCCceEeecccCC-CCceEEEECCCCCEEEEEC
Confidence              3568999998776544322111 112233333 457888753

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=95.14  E-value=1.4  Score=37.84  Aligned_cols=167  Identities=8%  Similarity=0.010  Sum_probs=80.2

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEe--eecccccccccCcceEeecCCCCCeEEccCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKAA  108 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~  108 (381)
                      ++.+|+....+     +.+..||+. +. ...+. .......+++..  +..+...  .....+.++++. .+.+... +
T Consensus        25 ~g~l~v~~~~~-----~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~--~~~~~i~~~~~~-g~~~~~~-~   94 (299)
T 2z2n_A           25 KGKVWITQHKA-----NMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTE--NAANKIGRITKK-GIIKEYT-L   94 (299)
T ss_dssp             TSCEEEEETTT-----TEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEE--TTTTEEEEECTT-SCEEEEE-C
T ss_pred             CCCEEEEecCC-----CcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeC--CCCCeEEEECCC-CcEEEEe-C
Confidence            67888865322     367888888 55 33321 111112222221  1122211  112357788876 4444433 2


Q ss_pred             CCCCCC-ceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCC
Q 016877          109 PVPRLD-GAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQC  185 (381)
Q Consensus       109 p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~  185 (381)
                      |..-.. ..++.. ++.+|+....      ...+.++|+ +.+..... .+.. ......++.. ++.+|+..-      
T Consensus        95 ~~~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~-~~~~-~~~~~~i~~~~~g~l~v~~~------  159 (299)
T 2z2n_A           95 PNPDSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYE-LPNK-GSYPSFITLGSDNALWFTEN------  159 (299)
T ss_dssp             SSTTCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEE-CSST-TCCEEEEEECTTSCEEEEET------
T ss_pred             CCcCCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEec-CCCC-CCCCceEEEcCCCCEEEEeC------
Confidence            222222 233333 4688887532      135888998 55555432 1111 1223344443 568888642      


Q ss_pred             CCCcceEEEEECCCCcEEeCCCCCCC-CcccEEEEE-CCEEEEEc
Q 016877          186 RGPTAHTFVLDTETKKWQDLPPLPVP-RYAPATQLW-RGRLHVMG  228 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~-~~~lyv~G  228 (381)
                        ....+++||+ +.+..... .+.. ..-..++.. ++++|+..
T Consensus       160 --~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~  200 (299)
T 2z2n_A          160 --QNNAIGRITE-SGDITEFK-IPTPASGPVGITKGNDDALWFVE  200 (299)
T ss_dssp             --TTTEEEEECT-TCCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             --CCCEEEEEcC-CCcEEEee-CCCCCCcceeEEECCCCCEEEEc
Confidence              1356899999 76666532 1111 111233332 46788774

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=95.13  E-value=0.7  Score=42.54  Aligned_cols=144  Identities=10%  Similarity=0.003  Sum_probs=65.2

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEee-ecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKT-KKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++.+.+.|+.++     .+..||..+++  ..+.... ..-..+.... +.....+ .....+..+|..+.+-  +..+.
T Consensus       119 ~~~~l~s~s~Dg-----~i~vwd~~~~~~~~~l~~h~-~~V~~v~~~~~~~~l~sg-s~D~~i~iwd~~~~~~--~~~~~  189 (410)
T 1vyh_C          119 VFSVMVSASEDA-----TIKVWDYETGDFERTLKGHT-DSVQDISFDHSGKLLASC-SADMTIKLWDFQGFEC--IRTMH  189 (410)
T ss_dssp             SSSEEEEEESSS-----CEEEEETTTCCCCEEECCCS-SCEEEEEECTTSSEEEEE-ETTSCCCEEETTSSCE--EECCC
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCcEEEEEeccC-CcEEEEEEcCCCCEEEEE-eCCCeEEEEeCCCCce--eEEEc
Confidence            456677777655     67889988876  3333211 1111111100 0001000 1122455566554432  22222


Q ss_pred             CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCC
Q 016877          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCR  186 (381)
Q Consensus       110 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~  186 (381)
                      .......++.+  ++..++.|+.+      ..+.+||..+..-...-.-..   ..-..+.. .++.+++.|+.++    
T Consensus       190 ~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~~~~g~~l~s~s~D~----  256 (410)
T 1vyh_C          190 GHDHNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKTFTGHR---EWVRMVRPNQDGTLIASCSNDQ----  256 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEEEECCS---SCEEEEEECTTSSEEEEEETTS----
T ss_pred             CCCCCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEeCCC---ccEEEEEECCCCCEEEEEcCCC----
Confidence            22222222333  45667777754      357888988765332111011   11112222 3456666776543    


Q ss_pred             CCcceEEEEECCCCcE
Q 016877          187 GPTAHTFVLDTETKKW  202 (381)
Q Consensus       187 ~~~~~~~~yd~~~~~W  202 (381)
                          .+..||..+..-
T Consensus       257 ----~v~vwd~~~~~~  268 (410)
T 1vyh_C          257 ----TVRVWVVATKEC  268 (410)
T ss_dssp             ----CEEEEETTTCCE
T ss_pred             ----eEEEEECCCCce
Confidence                366777766543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=94.94  E-value=0.88  Score=42.05  Aligned_cols=99  Identities=7%  Similarity=0.002  Sum_probs=54.7

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      ..++.+|..+.+...+...+.   ......+  ++ +|++.+..++    ...++.+|+.+.+...+...+.    ....
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~---~~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~~~~----~~~~  271 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR---HNGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDGRS----NNTE  271 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS---CEEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCCCSS----CEEE
T ss_pred             cEEEEEECCCCcEEEeecCCC---cccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcCCCC----cccc
Confidence            367888888877666544322   1222222  44 4555554332    2359999999888776654332    1122


Q ss_pred             EEE-eCCE-EEEEcCCCCCCCCCCcceEEEEECCCCcEEeC
Q 016877          167 MVT-DGRY-IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL  205 (381)
Q Consensus       167 ~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~  205 (381)
                      .+. -+++ |++.+..++      ...++.+|..+.+-..+
T Consensus       272 ~~~spdg~~l~~~s~~~g------~~~i~~~d~~~~~~~~l  306 (415)
T 2hqs_A          272 PTWFPDSQNLAFTSDQAG------RPQVYKVNINGGAPQRI  306 (415)
T ss_dssp             EEECTTSSEEEEEECTTS------SCEEEEEETTSSCCEEC
T ss_pred             eEECCCCCEEEEEECCCC------CcEEEEEECCCCCEEEE
Confidence            333 2444 444432222      35799999988765544

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=94.92  E-value=1.4  Score=38.38  Aligned_cols=143  Identities=5%  Similarity=-0.102  Sum_probs=64.0

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++.+.+.|+.++     .+..||..++.  ..+.... ..-..+..... .....+ .....+..+|..+.+-..  .+.
T Consensus        24 ~~~~l~s~~~dg-----~v~lWd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~s~-s~d~~i~vwd~~~~~~~~--~~~   94 (304)
T 2ynn_A           24 TEPWVLTTLYSG-----RVELWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVV--DFE   94 (304)
T ss_dssp             SSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEE--EEE
T ss_pred             CCCEEEEEcCCC-----cEEEEECCCCceeEEeeccC-CcEEEEEEeCCCCEEEEE-CCCCEEEEEECCCCcEEE--EEe
Confidence            556667777555     67889998876  3333211 00011111000 011111 122356677776654221  111


Q ss_pred             CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCC
Q 016877          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQC  185 (381)
Q Consensus       110 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~  185 (381)
                      .......++.+  ++.+++.|+.++      .+.++|..++. .....+... ...-.+++..  ++.+++.|+.++   
T Consensus        95 ~h~~~v~~~~~~~~~~~l~sgs~D~------~v~lWd~~~~~-~~~~~~~~h-~~~v~~v~~~p~~~~~l~sgs~D~---  163 (304)
T 2ynn_A           95 AHPDYIRSIAVHPTKPYVLSGSDDL------TVKLWNWENNW-ALEQTFEGH-EHFVMCVAFNPKDPSTFASGCLDR---  163 (304)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTS------CEEEEEGGGTT-EEEEEECCC-CSCEEEEEECTTCTTEEEEEETTS---
T ss_pred             CCCCcEEEEEEcCCCCEEEEECCCC------eEEEEECCCCc-chhhhhccc-CCcEEEEEECCCCCCEEEEEeCCC---
Confidence            11111222222  456677777652      46777876541 111111110 1112334443  345677776543   


Q ss_pred             CCCcceEEEEECCCC
Q 016877          186 RGPTAHTFVLDTETK  200 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~  200 (381)
                           .+..||..+.
T Consensus       164 -----~v~iwd~~~~  173 (304)
T 2ynn_A          164 -----TVKVWSLGQS  173 (304)
T ss_dssp             -----EEEEEETTCS
T ss_pred             -----eEEEEECCCC
Confidence                 4777887543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.89  E-value=1.4  Score=44.36  Aligned_cols=172  Identities=5%  Similarity=-0.113  Sum_probs=77.6

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEee-ecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKT-KKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++.+.++|+.++     .+..||..++.  ..+.... ..-..+.-.. +.....+ .....+..+|..+.+....-.  
T Consensus        24 ~~~~la~~~~~g-----~v~iwd~~~~~~~~~~~~~~-~~v~~~~~s~~~~~l~~~-~~dg~i~vw~~~~~~~~~~~~--   94 (814)
T 3mkq_A           24 TEPWVLTTLYSG-----RVEIWNYETQVEVRSIQVTE-TPVRAGKFIARKNWIIVG-SDDFRIRVFNYNTGEKVVDFE--   94 (814)
T ss_dssp             SSSEEEEEETTS-----EEEEEETTTTEEEEEEECCS-SCEEEEEEEGGGTEEEEE-ETTSEEEEEETTTCCEEEEEE--
T ss_pred             CCCEEEEEeCCC-----EEEEEECCCCceEEEEecCC-CcEEEEEEeCCCCEEEEE-eCCCeEEEEECCCCcEEEEEe--
Confidence            455666666444     67889988877  3333211 1111111110 1111111 113467778877766433211  


Q ss_pred             CCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCC-eEecC-CCCCCCCccceEEEEEe--CCEEEEEcCCCCC
Q 016877          110 VPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDN-TWGGR-FDMPREMAHSHLGMVTD--GRYIYVVTGQYGP  183 (381)
Q Consensus       110 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~-~W~~~-~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  183 (381)
                      .......+..+  ++..++.|+.+      ..+.+||..++ ..... ....    ..-.+++..  ++..++.|+.+  
T Consensus        95 ~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~----~~v~~~~~~p~~~~~l~~~~~d--  162 (814)
T 3mkq_A           95 AHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFEGHE----HFVMCVAFNPKDPSTFASGCLD--  162 (814)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEECCS----SCEEEEEEETTEEEEEEEEETT--
T ss_pred             cCCCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEcCCC----CcEEEEEEEcCCCCEEEEEeCC--
Confidence            11111222222  45556666643      24778888765 33221 1111    112334443  45677776643  


Q ss_pred             CCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE---CCEEEEEccCC
Q 016877          184 QCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW---RGRLHVMGGSG  231 (381)
Q Consensus       184 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~  231 (381)
                            ..+..||..+..-...-..........++..   ++.+++.|+.+
T Consensus       163 ------g~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d  207 (814)
T 3mkq_A          163 ------RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDD  207 (814)
T ss_dssp             ------SEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTT
T ss_pred             ------CeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCC
Confidence                  3478888765432111111111222233332   56677777654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.88  E-value=1.5  Score=37.05  Aligned_cols=120  Identities=13%  Similarity=-0.017  Sum_probs=58.7

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~  168 (381)
                      ..+..+++.+............ .-.+++.. ++.+|+... +      ..+.+||+.......+.....   .....++
T Consensus        46 ~~i~~~~~~~~~~~~~~~~~~~-~p~~i~~~~~g~l~v~~~-~------~~i~~~d~~~~~~~~~~~~~~---~~p~~i~  114 (270)
T 1rwi_B           46 GRVVKLATGSTGTTVLPFNGLY-QPQGLAVDGAGTVYVTDF-N------NRVVTLAAGSNNQTVLPFDGL---NYPEGLA  114 (270)
T ss_dssp             CEEEEECC-----EECCCCSCC-SCCCEEECTTCCEEEEET-T------TEEEEECTTCSCCEECCCCSC---SSEEEEE
T ss_pred             CcEEEecCCCcccceEeeCCcC-CcceeEECCCCCEEEEcC-C------CEEEEEeCCCceEeeeecCCc---CCCcceE
Confidence            3577787766554433221111 11233333 567888764 1      358889988776544422111   1223444


Q ss_pred             Ee-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEcc
Q 016877          169 TD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (381)
Q Consensus       169 ~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG  229 (381)
                      .. ++++|+....        ...++++|..+........... ..-..+++. ++++|+...
T Consensus       115 ~~~~g~l~v~~~~--------~~~i~~~~~~~~~~~~~~~~~~-~~p~~i~~~~~g~l~v~~~  168 (270)
T 1rwi_B          115 VDTQGAVYVADRG--------NNRVVKLAAGSKTQTVLPFTGL-NDPDGVAVDNSGNVYVTDT  168 (270)
T ss_dssp             ECTTCCEEEEEGG--------GTEEEEECTTCCSCEECCCCSC-CSCCCEEECTTCCEEEEEG
T ss_pred             ECCCCCEEEEECC--------CCEEEEEECCCceeEeeccccC-CCceeEEEeCCCCEEEEEC
Confidence            43 6678887431        2458888877665544321111 111233333 567888753

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=94.87  E-value=0.72  Score=41.56  Aligned_cols=102  Identities=12%  Similarity=0.134  Sum_probs=50.5

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +++.++.|+.++      .+.++|..+++-...-....   ..-.+++..  ++.+++.++.++        .+..||..
T Consensus       150 dg~~l~sgs~dg------~v~iwd~~~~~~~~~~~~h~---~~v~~v~~s~~~~~~~~s~~~dg--------~v~~wd~~  212 (357)
T 4g56_B          150 DGTQAVSGGKDF------SVKVWDLSQKAVLKSYNAHS---SEVNCVAACPGKDTIFLSCGEDG--------RILLWDTR  212 (357)
T ss_dssp             SSSEEEEEETTS------CEEEEETTTTEEEEEECCCS---SCEEEEEECTTCSSCEEEEETTS--------CEEECCTT
T ss_pred             CCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCC---CCEEEEEEccCCCceeeeeccCC--------ceEEEECC
Confidence            556777777643      47788988876443211111   112233332  234667776543        37778887


Q ss_pred             CCcEEeCCCCCCCCccc-EEEEE--CCEEEEEccCCCCCCCCCccceEe
Q 016877          199 TKKWQDLPPLPVPRYAP-ATQLW--RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       199 ~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      +.+-............. +++..  ++.+++.|+.+.     .+..|++
T Consensus       213 ~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~-----~i~~wd~  256 (357)
T 4g56_B          213 KPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETG-----NVSLVNI  256 (357)
T ss_dssp             SSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSS-----CEEEEES
T ss_pred             CCceeeeeeeccccccccchhhhhcccceEEEeeccc-----ceeEEEC
Confidence            76432221221111112 22222  356777776543     3455553

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.86  E-value=0.25  Score=44.07  Aligned_cols=61  Identities=8%  Similarity=-0.002  Sum_probs=35.7

Q ss_pred             ceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (381)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (381)
                      .++.+|.++++++.+......  .....++. -++++|+.+...+      ...++.||+.+.+++.+..
T Consensus        19 ~v~~~d~~tg~~~~~~~~~~~--~~p~~~a~spdg~l~~~~~~~~------~~~v~~~~~~~g~~~~~~~   80 (347)
T 3hfq_A           19 YQGTLDTTAKTLTNDGLLAAT--QNPTYLALSAKDCLYSVDKEDD------EGGIAAWQIDGQTAHKLNT   80 (347)
T ss_dssp             EEEEEETTTTEEEEEEEEEEC--SCCCCEEECTTCEEEEEEEETT------EEEEEEEEEETTEEEEEEE
T ss_pred             EEEEEcCCCCeEEEeeeeecc--CCcceEEEccCCeEEEEEecCC------CceEEEEEecCCcEEEeee
Confidence            478888888888764322110  11112333 3677887753211      3678999998887766653

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=94.85  E-value=1.4  Score=39.61  Aligned_cols=100  Identities=9%  Similarity=0.085  Sum_probs=48.9

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecC-CCCCCCCccceEEEEEe---CCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      ++..++.|+.+      ..+.++|+.+.+-... .....    .-.++...   ++..++.|+.++        .+..||
T Consensus       165 ~~~~l~t~s~D------~~v~lwd~~~~~~~~~~~~h~~----~v~~~~~~~~~~g~~l~sgs~Dg--------~v~~wd  226 (354)
T 2pbi_B          165 SDMQILTASGD------GTCALWDVESGQLLQSFHGHGA----DVLCLDLAPSETGNTFVSGGCDK--------KAMVWD  226 (354)
T ss_dssp             SSSEEEEEETT------SEEEEEETTTCCEEEEEECCSS----CEEEEEECCCSSCCEEEEEETTS--------CEEEEE
T ss_pred             CCCEEEEEeCC------CcEEEEeCCCCeEEEEEcCCCC----CeEEEEEEeCCCCCEEEEEeCCC--------eEEEEE
Confidence            34455556543      3578889887754321 11111    11122221   346677777544        378889


Q ss_pred             CCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          197 TETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       197 ~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ..+.+....-... ...-.+++.. ++.+++.|+.++     .+..|++
T Consensus       227 ~~~~~~~~~~~~h-~~~v~~v~~~p~~~~l~s~s~D~-----~v~lwd~  269 (354)
T 2pbi_B          227 MRSGQCVQAFETH-ESDVNSVRYYPSGDAFASGSDDA-----TCRLYDL  269 (354)
T ss_dssp             TTTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CCCCcEEEEecCC-CCCeEEEEEeCCCCEEEEEeCCC-----eEEEEEC
Confidence            8877643321111 1111122222 566777776543     4556653

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.81  E-value=0.9  Score=45.87  Aligned_cols=57  Identities=21%  Similarity=0.123  Sum_probs=36.0

Q ss_pred             ceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (381)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (381)
                      -+.+||+.+++++.......+ ...-.+++.. ++.||+-..          .-+++||+.+.+|+...
T Consensus       428 Gl~~~~~~~~~~~~~~~~~~~-~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~  485 (781)
T 3v9f_A          428 NISYYNTRLKKFQIIELEKNE-LLDVRVFYEDKNKKIWIGTH----------AGVFVIDLASKKVIHHY  485 (781)
T ss_dssp             EEEEECSSSCEEEECCSTTTC-CCCEEEEEECTTSEEEEEET----------TEEEEEESSSSSCCEEE
T ss_pred             CEEEEcCCCCcEEEeccCCCC-CCeEEEEEECCCCCEEEEEC----------CceEEEeCCCCeEEecc
Confidence            488999999999887532111 1222233333 578887431          34899999998886654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=94.75  E-value=0.98  Score=39.43  Aligned_cols=29  Identities=7%  Similarity=0.048  Sum_probs=20.2

Q ss_pred             CCEEEEEcccccccCCceeeeeecceEEEEcCCC-ceEEeec
Q 016877          340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL-VAVLNAM  380 (381)
Q Consensus       340 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~-~W~~i~~  380 (381)
                      ++++++.|+.++            .+.+||.+++ .|+.+..
T Consensus       317 ~~~~l~s~~~dg------------~v~iw~~~~~~~~~~~~~  346 (351)
T 3f3f_A          317 TGTILSSAGDDG------------KVRLWKATYSNEFKCMSV  346 (351)
T ss_dssp             SSCCEEEEETTS------------CEEEEEECTTSCEEEEEE
T ss_pred             CCCEEEEecCCC------------cEEEEecCcCcchhheee
Confidence            577888887653            3777777764 6887764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=94.74  E-value=2  Score=43.39  Aligned_cols=59  Identities=7%  Similarity=0.115  Sum_probs=36.0

Q ss_pred             ceEEEeCCCCeEecCCCCCCCCc-cceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877          139 HVDIYNFTDNTWGGRFDMPREMA-HSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (381)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~~~~~~-r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (381)
                      -+.+||+.+++++.......... ..-.+++.. ++.||+-..          +-+++||+++.+|+....
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~----------~Gl~~~~~~~~~~~~~~~  488 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL----------SALVRFNPEQRSFTTIEK  488 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES----------SCEEEEETTTTEEEECCB
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec----------CceeEEeCCCCeEEEccc
Confidence            37899999988877643111011 112233332 567776532          238999999999988753

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=94.71  E-value=2.1  Score=37.77  Aligned_cols=100  Identities=8%  Similarity=0.091  Sum_probs=51.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +++.++.|+.++      .+.+||+.+.+-.. +.....+.    .+++. -++++++.|+.++        .+..||..
T Consensus       175 dg~~lasg~~dg------~i~iwd~~~~~~~~~~~~h~~~v----~~l~~spd~~~l~s~s~dg--------~i~iwd~~  236 (321)
T 3ow8_A          175 DGKYLASGAIDG------IINIFDIATGKLLHTLEGHAMPI----RSLTFSPDSQLLVTASDDG--------YIKIYDVQ  236 (321)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEECCCSSCC----CEEEECTTSCEEEEECTTS--------CEEEEETT
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcEEEEEcccCCce----eEEEEcCCCCEEEEEcCCC--------eEEEEECC
Confidence            557777777642      47889998775432 22111111    12333 3566777776543        37788887


Q ss_pred             CCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          199 TKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       199 ~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      +......-.- ....-.+++.. +++.++.|+.++     .+..|++
T Consensus       237 ~~~~~~~~~~-h~~~v~~~~~sp~~~~l~s~s~D~-----~v~iwd~  277 (321)
T 3ow8_A          237 HANLAGTLSG-HASWVLNVAFCPDDTHFVSSSSDK-----SVKVWDV  277 (321)
T ss_dssp             TCCEEEEECC-CSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             CcceeEEEcC-CCCceEEEEECCCCCEEEEEeCCC-----cEEEEeC
Confidence            7654321111 11111222222 566777776543     4566653

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=94.71  E-value=2  Score=38.53  Aligned_cols=141  Identities=4%  Similarity=-0.138  Sum_probs=67.0

Q ss_pred             EEEEecCCCCCcccceeeeeeCCCce-e-eecC-CCCCCCceeEEe--eecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           35 FFWASSSKFTSSYLNIASNWSPYHNS-I-ILPN-NGPQKGENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        35 ~ly~~GG~~~~~~~~~~~~~d~~~~~-~-~~p~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      .+++.|+.++     .+..||..+.. . .+.. .....-..+...  .+...... .....+..+|..+.....+....
T Consensus        87 ~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~-~~d~~i~iwd~~~~~~~~~~~~~  160 (383)
T 3ei3_B           87 TTVAVGSKGG-----DIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVS-SIRGATTLRDFSGSVIQVFAKTD  160 (383)
T ss_dssp             TEEEEEEBTS-----CEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEE-ETTTEEEEEETTSCEEEEEECCC
T ss_pred             CEEEEEcCCC-----eEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEE-eCCCEEEEEECCCCceEEEeccC
Confidence            5677776554     67889998776 3 2321 111111122211  11111111 12335667777765554443322


Q ss_pred             CCCCCceE-E-EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCE-EEEEcCCCCCCC
Q 016877          110 VPRLDGAA-I-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRY-IYVVTGQYGPQC  185 (381)
Q Consensus       110 ~~r~~~~~-~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~-iyv~GG~~~~~~  185 (381)
                      .......+ + .-++.+++.|+.+      ..+.+||+....-..+.....    .-.+++.. ++. +++.|+.+    
T Consensus       161 ~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~s~~~d----  226 (383)
T 3ei3_B          161 SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLHKA----KVTHAEFNPRCDWLMATSSVD----  226 (383)
T ss_dssp             CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECSSS----CEEEEEECSSCTTEEEEEETT----
T ss_pred             CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccCCC----cEEEEEECCCCCCEEEEEeCC----
Confidence            11111222 2 2255677777654      358888886544443322111    12233333 333 66666643    


Q ss_pred             CCCcceEEEEECCC
Q 016877          186 RGPTAHTFVLDTET  199 (381)
Q Consensus       186 ~~~~~~~~~yd~~~  199 (381)
                          ..+..||..+
T Consensus       227 ----~~i~iwd~~~  236 (383)
T 3ei3_B          227 ----ATVKLWDLRN  236 (383)
T ss_dssp             ----SEEEEEEGGG
T ss_pred             ----CEEEEEeCCC
Confidence                3477888876

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=94.68  E-value=1.9  Score=39.01  Aligned_cols=98  Identities=8%  Similarity=0.027  Sum_probs=48.5

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCC---ccceEEEEEeC--CEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM---AHSHLGMVTDG--RYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~---~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      +.+++.|+.+      ..+.+||+.+.+-...-..+.+.   ...-.+++...  ..+++.|+.++.     ...+..||
T Consensus       178 ~~~l~~~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~-----~~~i~~~d  246 (416)
T 2pm9_A          178 AHVFASAGSS------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDN-----DPSILIWD  246 (416)
T ss_dssp             TTEEEEESSS------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSS-----SCCCCEEE
T ss_pred             CcEEEEEcCC------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCC-----CceEEEEe
Confidence            4677777754      24888999887654432222100   11223344433  246777664431     12477888


Q ss_pred             CCCCcEEeCCCCC--CCCcccEEEEE--CCEEEEEccCC
Q 016877          197 TETKKWQDLPPLP--VPRYAPATQLW--RGRLHVMGGSG  231 (381)
Q Consensus       197 ~~~~~W~~~~~~p--~~r~~~~~~~~--~~~lyv~GG~~  231 (381)
                      ..+.. ..+..+.  ....-.+++..  ++++++.|+.+
T Consensus       247 ~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d  284 (416)
T 2pm9_A          247 LRNAN-TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRD  284 (416)
T ss_dssp             TTSTT-SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESS
T ss_pred             CCCCC-CCcEEeecCccCceeEEEeCCCCCCeEEEEeCC
Confidence            88743 1111222  11222233332  56677777654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=94.66  E-value=1.1  Score=43.24  Aligned_cols=58  Identities=9%  Similarity=-0.093  Sum_probs=30.7

Q ss_pred             CEEEEEcCC-CCCCCCCCcceEEEEECCCCcEEeCCCCCCCCccc-EEEE-ECCEEEEEccCCCCCCCCCccceE
Q 016877          172 RYIYVVTGQ-YGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAP-ATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       172 ~~iyv~GG~-~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      ++.++.|+. +        ..+..||..+..... ..+......- +++. -++++++.|+.++     .+..|+
T Consensus       456 ~~~l~~~~~~d--------~~i~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~g~~l~~~~~dg-----~i~iw~  516 (615)
T 1pgu_A          456 QNYVAVGLEEG--------NTIQVFKLSDLEVSF-DLKTPLRAKPSYISISPSETYIAAGDVMG-----KILLYD  516 (615)
T ss_dssp             SSEEEEEETTT--------SCEEEEETTEEEEEE-ECSSCCSSCEEEEEECTTSSEEEEEETTS-----CEEEEE
T ss_pred             CCEEEEeecCC--------CeEEEEECCCccccc-cccCCccCceEEEEECCCCCEEEEcCCCC-----eEEEee
Confidence            555666653 3        348889998876643 2222111112 2222 2677777777543     355565

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=94.64  E-value=1.5  Score=44.32  Aligned_cols=161  Identities=7%  Similarity=0.025  Sum_probs=81.7

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CC-ccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EM-AHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~-~r~~~  165 (381)
                      .-+.+||+.+.+++.......+.....+...  ++.|++...        .-+.+||+.+++|+.....+. +. ...-.
T Consensus       427 ~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~--------~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~  498 (781)
T 3v9f_A          427 GNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH--------AGVFVIDLASKKVIHHYDTSNSQLLENFVR  498 (781)
T ss_dssp             EEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET--------TEEEEEESSSSSCCEEECTTTSSCSCSCEE
T ss_pred             CCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC--------CceEEEeCCCCeEEecccCcccccccceeE
Confidence            3567888888887776532111112222222  457776432        238899999988876543221 00 11122


Q ss_pred             EEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC---CCCCCcccEEEE-ECCEEEEEccCCCCCCCCCcc
Q 016877          166 GMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP---LPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVD  240 (381)
Q Consensus       166 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~  240 (381)
                      +++. .++.|++-.-.         .-+++||+.+.+++....   ++... -.+++. .++.|++... .+      . 
T Consensus       499 ~i~~d~~g~lWigt~~---------~Gl~~~~~~~~~~~~~~~~~~l~~~~-i~~i~~d~~g~lWi~T~-~G------l-  560 (781)
T 3v9f_A          499 SIAQDSEGRFWIGTFG---------GGVGIYTPDMQLVRKFNQYEGFCSNT-INQIYRSSKGQMWLATG-EG------L-  560 (781)
T ss_dssp             EEEECTTCCEEEEESS---------SCEEEECTTCCEEEEECTTTTCSCSC-EEEEEECTTSCEEEEET-TE------E-
T ss_pred             EEEEcCCCCEEEEEcC---------CCEEEEeCCCCeEEEccCCCCCCCCe-eEEEEECCCCCEEEEEC-CC------c-
Confidence            2322 35678875311         238899999998887653   22111 112222 2466776532 11      0 


Q ss_pred             ceEeeeecCCccCCceEEec---CCCCCCcceeEEEe-CCEEEEEc
Q 016877          241 HWSLAVKDGKPLEKEWRTEI---PIPRGGPHRACVVV-DDRLLVIG  282 (381)
Q Consensus       241 ~~~~~~~~~~~~~~~W~~~~---~~p~~~~~~~~~~~-~~~l~v~G  282 (381)
                           ++.||+.+.+++...   .+|..... +++.. +++|++.+
T Consensus       561 -----v~~~d~~~~~~~~~~~~~gl~~~~i~-~i~~d~~g~lW~~t  600 (781)
T 3v9f_A          561 -----VCFPSARNFDYQVFQRKEGLPNTHIR-AISEDKNGNIWAST  600 (781)
T ss_dssp             -----EEESCTTTCCCEEECGGGTCSCCCCC-EEEECSSSCEEEEC
T ss_pred             -----eEEECCCCCcEEEccccCCCCCceEE-EEEECCCCCEEEEc
Confidence                 133456666665542   34443332 33333 56787754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.64  E-value=0.49  Score=41.65  Aligned_cols=122  Identities=7%  Similarity=-0.012  Sum_probs=61.6

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEE-ECC-EEEEEecCCCCCCcccceEEEeCCCCeE-e-cCCCCCCCCccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQ-IKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTW-G-GRFDMPREMAHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~-~~~~~~~~~~r~~~  165 (381)
                      ..+..+|..+.+.......+..  ...++. -++ .+|+.+..+      ..++++|+.+.+- . .+.....|  +...
T Consensus        20 ~~v~~~d~~~~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~--~~~~   89 (331)
T 3u4y_A           20 RRISFFSTDTLEILNQITLGYD--FVDTAITSDCSNVVVTSDFC------QTLVQIETQLEPPKVVAIQEGQSS--MADV   89 (331)
T ss_dssp             TEEEEEETTTCCEEEEEECCCC--EEEEEECSSSCEEEEEESTT------CEEEEEECSSSSCEEEEEEECSSC--CCCE
T ss_pred             CeEEEEeCcccceeeeEEccCC--cceEEEcCCCCEEEEEeCCC------CeEEEEECCCCceeEEecccCCCC--ccce
Confidence            4678888888877554443321  123332 244 577776532      3689999988764 2 22221221  1112


Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CC-EEEEEcc
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RG-RLHVMGG  229 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~lyv~GG  229 (381)
                      +..-.++.+| .+...+     ....+.+||+++.+-...  ++.....+.++.. ++ .+|+.+.
T Consensus        90 ~~s~dg~~l~-~~~~~~-----~~~~i~v~d~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           90 DITPDDQFAV-TVTGLN-----HPFNMQSYSFLKNKFIST--IPIPYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             EECTTSSEEE-ECCCSS-----SSCEEEEEETTTTEEEEE--EECCTTEEEEEECTTSSCEEEEEE
T ss_pred             EECCCCCEEE-EecCCC-----CcccEEEEECCCCCeEEE--EECCCCccceEECCCCCEEEEEec
Confidence            2222344666 432111     013799999998775443  2222222344443 34 4777754

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.58  E-value=2.6  Score=38.27  Aligned_cols=104  Identities=5%  Similarity=-0.095  Sum_probs=48.0

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccCCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~  110 (381)
                      ++.++++|+.++     .+..||..+.. ..........-..+..... .....+ .....+..+|..+.+-.  ..+..
T Consensus       108 ~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-s~d~~i~iwd~~~~~~~--~~~~~  179 (420)
T 3vl1_A          108 QMRRFILGTTEG-----DIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISS-SQDMQLKIWSVKDGSNP--RTLIG  179 (420)
T ss_dssp             SSCEEEEEETTS-----CEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEE-ETTSEEEEEETTTCCCC--EEEEC
T ss_pred             CCCEEEEEECCC-----CEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEE-eCCCeEEEEeCCCCcCc--eEEcC
Confidence            566777777554     67888988777 3332211111111111100 011111 12235667776654321  11111


Q ss_pred             CCCCc-eEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeE
Q 016877          111 PRLDG-AAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTW  150 (381)
Q Consensus       111 ~r~~~-~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  150 (381)
                      ..... +++.. ++..++.|+.++      .+.+||+.+.+-
T Consensus       180 h~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~  215 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTT  215 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEE
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCce
Confidence            11111 22222 456666776542      477888887653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=94.54  E-value=1.7  Score=38.38  Aligned_cols=104  Identities=11%  Similarity=0.122  Sum_probs=45.9

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCC-----eEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDN-----TWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFV  194 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~  194 (381)
                      ++.+++.|+.++      .+.++|....     ++..+..+... ...-.+++.. +++.++.|+.++        .+..
T Consensus        69 ~~~~las~s~D~------~v~iw~~~~~~~~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s~D~--------~v~i  133 (330)
T 2hes_X           69 HTSLLAAGSFDS------TVSIWAKEESADRTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCSRDK--------SVWI  133 (330)
T ss_dssp             TSSEEEEEETTS------CEEEEEC-------CCCEEEEEEC-----CEEEEEECTTSCEEEEEETTS--------CEEE
T ss_pred             CCCEEEEEeCCC------cEEEEEcccCcCccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEeCCC--------EEEE
Confidence            456777777653      3666776432     12222112110 0111223332 456666766543        3677


Q ss_pred             EECCC--CcEEeCCCCCCC-CcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          195 LDTET--KKWQDLPPLPVP-RYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       195 yd~~~--~~W~~~~~~p~~-r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      +|..+  ..++.+..+... ..-.+++. -++.+++.|+.++     .+..|+.
T Consensus       134 wd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~-----~i~iW~~  182 (330)
T 2hes_X          134 WETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDD-----TVRIWKD  182 (330)
T ss_dssp             EECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEEE
T ss_pred             EeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCC-----eEEEEEC
Confidence            78742  234333222211 11112222 2556777777543     4667764

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.42  E-value=2.4  Score=37.27  Aligned_cols=152  Identities=12%  Similarity=0.098  Sum_probs=72.4

Q ss_pred             CEEEEecCCC-CCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccCCC
Q 016877           34 DFFWASSSKF-TSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        34 ~~ly~~GG~~-~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      +.+|+..... ....-+.+..||+.+.+  ..++.........+..-++ .+...  .....+..+|+.+.+-...-+.+
T Consensus        53 ~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~--~~~~~v~~~d~~~~~~~~~~~~~  130 (353)
T 3vgz_A           53 NALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGN--TVNSAVTAIDAKTGEVKGRLVLD  130 (353)
T ss_dssp             TEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEE--TTTTEEEEEETTTCCEEEEEESC
T ss_pred             CEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEe--cCCCEEEEEeCCCCeeEEEEecC
Confidence            4777766321 11124578999998887  3333211111111111111 12211  12346888888877643322222


Q ss_pred             CCC--------CCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcC
Q 016877          110 VPR--------LDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTG  179 (381)
Q Consensus       110 ~~r--------~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG  179 (381)
                      ...        .-..++..  ++++|+.+...     ...++++|+.+.+-...-+...... ......-.++.+|+...
T Consensus       131 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~-----~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~  204 (353)
T 3vgz_A          131 DRKRTEEVRPLQPRELVADDATNTVYISGIGK-----ESVIWVVDGGNIKLKTAIQNTGKMS-TGLALDSEGKRLYTTNA  204 (353)
T ss_dssp             CCCCCSSCCCCEEEEEEEETTTTEEEEEEESS-----SCEEEEEETTTTEEEEEECCCCTTC-CCCEEETTTTEEEEECT
T ss_pred             CCccccccCCCCCceEEECCCCCEEEEEecCC-----CceEEEEcCCCCceEEEecCCCCcc-ceEEECCCCCEEEEEcC
Confidence            111        01223332  34677776322     1358999998776443222111101 11222224556777643


Q ss_pred             CCCCCCCCCcceEEEEECCCCcE
Q 016877          180 QYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       180 ~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                               ...+..+|+.+.+-
T Consensus       205 ---------~~~i~~~d~~~~~~  218 (353)
T 3vgz_A          205 ---------DGELITIDTADNKI  218 (353)
T ss_dssp             ---------TSEEEEEETTTTEE
T ss_pred             ---------CCeEEEEECCCCeE
Confidence                     24688999988764

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=94.42  E-value=1.5  Score=38.70  Aligned_cols=103  Identities=5%  Similarity=-0.072  Sum_probs=51.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEE-----eCCEEEEEcCCCCCCCCCCcceEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVT-----DGRYIYVVTGQYGPQCRGPTAHTF  193 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~~~  193 (381)
                      ++..++.|+.+      ..+.+||+.+.+  ...+........+.-.+++.     .++.+++.|+.+        ..+.
T Consensus       128 ~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d--------~~i~  193 (357)
T 3i2n_A          128 GAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDN--------GDIK  193 (357)
T ss_dssp             CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETT--------SEEE
T ss_pred             CccEEEEEeCC------CeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccC--------CeEE
Confidence            45566777654      247788888764  23232222111112222331     355666666533        3588


Q ss_pred             EEECCCCcEEeCCCCCCCCcccEEEEE----CCEEEEEccCCCCCCCCCccceEe
Q 016877          194 VLDTETKKWQDLPPLPVPRYAPATQLW----RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       194 ~yd~~~~~W~~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .||..+.+-......  ...-.+++..    ++..++.|+.++     .+..|++
T Consensus       194 i~d~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~l~~~~~dg-----~i~i~d~  241 (357)
T 3i2n_A          194 LFDLRNMALRWETNI--KNGVCSLEFDRKDISMNKLVATSLEG-----KFHVFDM  241 (357)
T ss_dssp             EEETTTTEEEEEEEC--SSCEEEEEESCSSSSCCEEEEEESTT-----EEEEEEE
T ss_pred             EEECccCceeeecCC--CCceEEEEcCCCCCCCCEEEEECCCC-----eEEEEeC
Confidence            899988764322111  1222333333    456677766443     4555654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=94.36  E-value=1.3  Score=38.31  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=47.4

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      .+++++.|..+      ..+.++|.++.+  |+.-..-.   ...+...+.-++++++.+          .+.+..||+.
T Consensus         4 ~~~~lv~~~~~------~~v~~~d~~tG~~~w~~~~~~~---~~~~~~~~~pdG~ilvs~----------~~~V~~~d~~   64 (276)
T 3no2_A            4 PQHLLVGGSGW------NKIAIINKDTKEIVWEYPLEKG---WECNSVAATKAGEILFSY----------SKGAKMITRD   64 (276)
T ss_dssp             CCEEEEECTTC------SEEEEEETTTTEEEEEEECCTT---CCCCEEEECTTSCEEEEC----------BSEEEEECTT
T ss_pred             CCcEEEeeCCC------CEEEEEECCCCeEEEEeCCCcc---CCCcCeEECCCCCEEEeC----------CCCEEEECCC
Confidence            45777776543      458889987775  77543211   122344455677888732          2458899983


Q ss_pred             C-CcEEeCCCCCCCCcccEEEE-ECCEEEEEcc
Q 016877          199 T-KKWQDLPPLPVPRYAPATQL-WRGRLHVMGG  229 (381)
Q Consensus       199 ~-~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG  229 (381)
                      - ..|+.-.+  .....+++.. .++++++...
T Consensus        65 G~~~W~~~~~--~~~~~~~~~~~~dG~~lv~~~   95 (276)
T 3no2_A           65 GRELWNIAAP--AGCEMQTARILPDGNALVAWC   95 (276)
T ss_dssp             SCEEEEEECC--TTCEEEEEEECTTSCEEEEEE
T ss_pred             CCEEEEEcCC--CCccccccEECCCCCEEEEec
Confidence            2 23765432  1112233333 3566666643

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=94.34  E-value=1.1  Score=39.58  Aligned_cols=23  Identities=26%  Similarity=0.210  Sum_probs=16.4

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++.+.+.|+.++     .+..||..+++
T Consensus        43 ~~~~l~~~~~dg-----~i~vwd~~~~~   65 (369)
T 3zwl_B           43 EGDLLFSCSKDS-----SASVWYSLNGE   65 (369)
T ss_dssp             TSCEEEEEESSS-----CEEEEETTTCC
T ss_pred             CCCEEEEEeCCC-----EEEEEeCCCch
Confidence            566677776555     67889988777

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.27  E-value=2.7  Score=37.27  Aligned_cols=203  Identities=13%  Similarity=0.109  Sum_probs=98.7

Q ss_pred             eEeecCCCCCeEEccC-CCCCCCC-ceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC-CCCccceEEEE
Q 016877           92 FQDLPAPELKWEKMKA-APVPRLD-GAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMV  168 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~-~p~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~~~  168 (381)
                      +++..-...+|+++.. .+.+... .++...++.+|++|-.       ..+++-+-.-.+|+.+.... .| .......+
T Consensus        58 i~~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~-~~~~~i~~  129 (327)
T 2xbg_A           58 LMETRDGGQTWEPRTLVLDHSDYRFNSVSFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLP-GSPRLIKA  129 (327)
T ss_dssp             EEEESSTTSSCEECCCCCSCCCCEEEEEEEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCS-SCEEEEEE
T ss_pred             EEEeCCCCCCCeECCCCCCCCCccEEEEEecCCeEEEEECC-------CeEEEECCCCCCceECccccCCC-CCeEEEEE
Confidence            4444434568998753 2222322 3344446788887621       12443333356899986432 12 12222233


Q ss_pred             EeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEeeee
Q 016877          169 TDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       169 ~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      ..++.+|+.|..         ..+++-+-.-.+|+.+.... +...+.++.. ++.++++|- .+       ..|...  
T Consensus       130 ~~~~~~~~~~~~---------g~v~~S~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~-~G-------~~~~S~--  189 (327)
T 2xbg_A          130 LGNGSAEMITNV---------GAIYRTKDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS-RG-------SFYSTW--  189 (327)
T ss_dssp             EETTEEEEEETT---------CCEEEESSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET-TS-------SEEEEE--
T ss_pred             ECCCCEEEEeCC---------ccEEEEcCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC-CC-------cEEEEe--
Confidence            457888888741         12555444456899886422 2233444443 456666652 21       222211  


Q ss_pred             cCCccCCceEEecCCCCCCcceeEEE-eCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEe-C-CCCCeEEcCC
Q 016877          248 DGKPLEKEWRTEIPIPRGGPHRACVV-VDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYML-D-DEMKWKVLPS  324 (381)
Q Consensus       248 ~~~~~~~~W~~~~~~p~~~~~~~~~~-~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y-d-~~~~W~~i~~  324 (381)
                        |....+|+.+....... ...++. -++++|+.+.. +                      .++.. + ...+|+.+..
T Consensus       190 --d~gG~tW~~~~~~~~~~-~~~~~~~~~g~~~~~~~~-G----------------------~~~~s~~D~G~tW~~~~~  243 (327)
T 2xbg_A          190 --EPGQTAWEPHNRTTSRR-LHNMGFTPDGRLWMIVNG-G----------------------KIAFSDPDNSENWGELLS  243 (327)
T ss_dssp             --CTTCSSCEEEECCSSSC-EEEEEECTTSCEEEEETT-T----------------------EEEEEETTEEEEECCCBC
T ss_pred             --CCCCCceeECCCCCCCc-cceeEECCCCCEEEEeCC-c----------------------eEEEecCCCCCeeEeccC
Confidence              22246888774322222 223332 35678876532 1                      14554 2 3668988753


Q ss_pred             CCCCCCCcceEEEEE-CCEEEEEcc
Q 016877          325 MPKPDSHIEFAWVLV-NNSIVIVGG  348 (381)
Q Consensus       325 ~~~~~~~~~~~~~~~-~~~l~v~GG  348 (381)
                      .+.+....-.+++.. ++.+|++|+
T Consensus       244 ~~~~~~~~~~~v~~~~~~~~~~~g~  268 (327)
T 2xbg_A          244 PLRRNSVGFLDLAYRTPNEVWLAGG  268 (327)
T ss_dssp             TTSSCCSCEEEEEESSSSCEEEEES
T ss_pred             CcccCCcceEEEEecCCCEEEEEeC
Confidence            211221111222222 578888875

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=94.17  E-value=2.6  Score=36.79  Aligned_cols=128  Identities=8%  Similarity=0.006  Sum_probs=62.5

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--ee-cccccccccCcceEeecCCCCCe-E-Ec
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TK-KDVVPKRILPATFQDLPAPELKW-E-KM  105 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~W-~-~l  105 (381)
                      .+.+|+....++     .+..||+.+++  ..++... ... +++..  +. .+...  .....++.+|..+.+- . .+
T Consensus         9 ~~~~~v~~~~~~-----~v~~~d~~~~~~~~~~~~~~-~~~-~~~~s~dg~~l~~~~--~~~~~i~~~d~~~~~~~~~~~   79 (331)
T 3u4y_A            9 SNFGIVVEQHLR-----RISFFSTDTLEILNQITLGY-DFV-DTAITSDCSNVVVTS--DFCQTLVQIETQLEPPKVVAI   79 (331)
T ss_dssp             CCEEEEEEGGGT-----EEEEEETTTCCEEEEEECCC-CEE-EEEECSSSCEEEEEE--STTCEEEEEECSSSSCEEEEE
T ss_pred             CCEEEEEecCCC-----eEEEEeCcccceeeeEEccC-Ccc-eEEEcCCCCEEEEEe--CCCCeEEEEECCCCceeEEec
Confidence            578888876433     78999999887  3333211 111 22211  11 12111  1233688888887764 2 22


Q ss_pred             cCCCCCCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CC-EEEEEcC
Q 016877          106 KAAPVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR-YIYVVTG  179 (381)
Q Consensus       106 ~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG  179 (381)
                      ..-..++  ++++.. ++ .+| .+...+.   ...+.++|+.+.+-...-+...    ..+.++.. ++ .+|+.+.
T Consensus        80 ~~~~~~~--~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~----~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           80 QEGQSSM--ADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPIPY----DAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             EECSSCC--CCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEECCT----TEEEEEECTTSSCEEEEEE
T ss_pred             ccCCCCc--cceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEECCC----CccceEECCCCCEEEEEec
Confidence            2222222  212222 33 566 3322211   1258999999887655322221    12344443 33 5787654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.15  E-value=0.7  Score=41.73  Aligned_cols=92  Identities=11%  Similarity=0.078  Sum_probs=44.2

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE----CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI----KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~  165 (381)
                      ..+..+|..+.+-......+.+.  ..+...    ++.+++.|+.+      ..+.+||+.+.+-...  +... ...-.
T Consensus       122 ~~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~------~~v~~~d~~~~~~~~~--~~~~-~~~v~  190 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFNFEETV--YSHHMSPVSTKHCLVAVGTRG------PKVQLCDLKSGSCSHI--LQGH-RQEIL  190 (408)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCE--EEEEECSSCSSCCEEEEEESS------SSEEEEESSSSCCCEE--ECCC-CSCEE
T ss_pred             CeEEEeeCCCCccceeccCCCce--eeeEeecCCCCCcEEEEEcCC------CeEEEEeCCCcceeee--ecCC-CCcEE
Confidence            45777777766543332222211  112111    33467777654      2478888876542221  1110 01122


Q ss_pred             EEEEe-C-CEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          166 GMVTD-G-RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       166 ~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +++.. + ..+++.|+.++        .+..||..+.
T Consensus       191 ~~~~~~~~~~ll~~~~~dg--------~i~i~d~~~~  219 (408)
T 4a11_B          191 AVSWSPRYDYILATASADS--------RVKLWDVRRA  219 (408)
T ss_dssp             EEEECSSCTTEEEEEETTS--------CEEEEETTCS
T ss_pred             EEEECCCCCcEEEEEcCCC--------cEEEEECCCC
Confidence            33333 2 33677776543        3777887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=94.14  E-value=2.1  Score=38.45  Aligned_cols=21  Identities=19%  Similarity=0.033  Sum_probs=14.2

Q ss_pred             EEEEecCCCCCcccceeeeeeCCCce
Q 016877           35 FFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        35 ~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      .+++.|+.++     .+..||..+..
T Consensus        27 ~~l~s~~~dg-----~i~iw~~~~~~   47 (397)
T 1sq9_A           27 SFTVSCSGDG-----YLKVWDNKLLD   47 (397)
T ss_dssp             SEEEEEETTS-----EEEEEESBCCT
T ss_pred             CeEEEEcCCC-----EEEEEECCCcc
Confidence            5667776555     67788887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=94.13  E-value=2.9  Score=37.08  Aligned_cols=198  Identities=12%  Similarity=0.128  Sum_probs=97.6

Q ss_pred             eEeecCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC-CCCccceEEEEE
Q 016877           92 FQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMVT  169 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~~~~  169 (381)
                      +++-.-...+|+.+. .|......++... .+.+|++|- .      ..+++-.-.-.+|+.+.... .+ ......+..
T Consensus        17 ~~~s~d~g~~W~~~~-~~~~~~~~~v~~~~~~~~~~~G~-~------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i~~   87 (327)
T 2xbg_A           17 SAIPALDYNPWEAIQ-LPTTATILDMSFIDRHHGWLVGV-N------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSVSF   87 (327)
T ss_dssp             -CCCBCSSCCEEEEE-CSCSSCEEEEEESSSSCEEEEET-T------TEEEEESSTTSSCEECCCCCSCC-CCEEEEEEE
T ss_pred             eeecCCCCCCceEee-cCCCCcEEEEEECCCCcEEEEcC-C------CeEEEeCCCCCCCeECCCCCCCC-CccEEEEEe
Confidence            334344556898875 3333322333333 457888653 1      12444333346899985321 21 122344555


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC-CCCcccEEE-EECCEEEEEccCCCCCCCCCccceEeeee
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP-VPRYAPATQ-LWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~-~~~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      .++.+|+.|- .        ..+++-+-.-.+|+.+.... .+.....++ .-++.+|+.+.. +       ..|..   
T Consensus        88 ~~~~~~~~g~-~--------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-g-------~v~~S---  147 (327)
T 2xbg_A           88 QGNEGWIVGE-P--------PIMLHTTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNV-G-------AIYRT---  147 (327)
T ss_dssp             ETTEEEEEEE-T--------TEEEEESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETT-C-------CEEEE---
T ss_pred             cCCeEEEEEC-C--------CeEEEECCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCC-c-------cEEEE---
Confidence            6788998752 1        23444333457899987432 222223333 346788887641 1       12221   


Q ss_pred             cCCccCCceEEecCCCCCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-C-CCCeEEcCC
Q 016877          248 DGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-D-EMKWKVLPS  324 (381)
Q Consensus       248 ~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~-~~~W~~i~~  324 (381)
                        +..-.+|+.+....... ...++.. +++++++|- .+                      .+|.-+ . ..+|+.+..
T Consensus       148 --~DgG~tW~~~~~~~~~~-~~~~~~~~~~~~~~~g~-~G----------------------~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          148 --KDSGKNWQALVQEAIGV-MRNLNRSPSGEYVAVSS-RG----------------------SFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             --SSTTSSEEEEECSCCCC-EEEEEECTTSCEEEEET-TS----------------------SEEEEECTTCSSCEEEEC
T ss_pred             --cCCCCCCEEeecCCCcc-eEEEEEcCCCcEEEEEC-CC----------------------cEEEEeCCCCCceeECCC
Confidence              12356798875422222 2233333 556666552 21                      255553 3 689998854


Q ss_pred             CCCCCCCcceEEE-EECCEEEEEc
Q 016877          325 MPKPDSHIEFAWV-LVNNSIVIVG  347 (381)
Q Consensus       325 ~~~~~~~~~~~~~-~~~~~l~v~G  347 (381)
                       +.+...  ..++ ..++.+|+++
T Consensus       202 -~~~~~~--~~~~~~~~g~~~~~~  222 (327)
T 2xbg_A          202 -TTSRRL--HNMGFTPDGRLWMIV  222 (327)
T ss_dssp             -CSSSCE--EEEEECTTSCEEEEE
T ss_pred             -CCCCcc--ceeEECCCCCEEEEe
Confidence             222222  2222 2356677665

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=94.08  E-value=0.84  Score=44.01  Aligned_cols=100  Identities=7%  Similarity=-0.064  Sum_probs=51.3

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--ee-cccccccccCcceEeecC--CCCCeEEc
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TK-KDVVPKRILPATFQDLPA--PELKWEKM  105 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~--~~~~W~~l  105 (381)
                      ++.+|+.+..++     .+..||..+++  ..++....  .+++...  +. .+.....   ..+..+|.  .+.+  .+
T Consensus       148 ~~~~~vs~~~d~-----~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d---~~V~v~D~~~~t~~--~~  215 (543)
T 1nir_A          148 PNLFSVTLRDAG-----QIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRD---ARIDMIDLWAKEPT--KV  215 (543)
T ss_dssp             GGEEEEEEGGGT-----EEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETT---SEEEEEETTSSSCE--EE
T ss_pred             CCEEEEEEcCCC-----eEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCC---CeEEEEECcCCCCc--EE
Confidence            778888876433     77889999887  44443111  2333221  11 2222222   57888888  4443  23


Q ss_pred             cCCCCCCCCceEEEE-----CC-EEEEEecCCCCCCcccceEEEeCCCCeE
Q 016877          106 KAAPVPRLDGAAIQI-----KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTW  150 (381)
Q Consensus       106 ~~~p~~r~~~~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W  150 (381)
                      ..++....-..++..     ++ .+|+..-.      ...+.++|..+.+-
T Consensus       216 ~~i~~g~~p~~va~sp~~~~dg~~l~v~~~~------~~~v~v~D~~t~~~  260 (543)
T 1nir_A          216 AEIKIGIEARSVESSKFKGYEDRYTIAGAYW------PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEE------SSEEEEEETTTCCE
T ss_pred             EEEecCCCcceEEeCCCcCCCCCEEEEEEcc------CCeEEEEecccccc
Confidence            333322221223332     44 56554422      23577888877653

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=93.92  E-value=0.78  Score=48.83  Aligned_cols=92  Identities=9%  Similarity=-0.022  Sum_probs=46.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecC-CCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++..+++|+.+      ..+.+||..+.+.... .....+   -......-+++..+.|+.++        .+..||..+
T Consensus       972 ~g~~l~~g~~~------g~i~i~d~~~~~~~~~~~~h~~~---v~~l~~s~dg~~l~s~~~dg--------~i~vwd~~~ 1034 (1249)
T 3sfz_A          972 HLEYVAFGDED------GAIKIIELPNNRVFSSGVGHKKA---VRHIQFTADGKTLISSSEDS--------VIQVWNWQT 1034 (1249)
T ss_dssp             TSSEEEEEETT------SCCEEEETTTTSCEEECCCCSSC---CCCEEECSSSSCEEEECSSS--------BEEEEETTT
T ss_pred             CCCEEEEEcCC------CCEEEEEcCCCceeeecccCCCc---eEEEEECCCCCEEEEEcCCC--------EEEEEECCC
Confidence            45666666654      2477888877653332 111111   11112223556666666433        478899998


Q ss_pred             CcEEeCCCCCCCCcccEEEEECCEEEEEccCC
Q 016877          200 KKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG  231 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~  231 (381)
                      .........  ...-.++....+..++.++.+
T Consensus      1035 ~~~~~~~~~--~~~v~~~~~~~~~~l~~~~~d 1064 (1249)
T 3sfz_A         1035 GDYVFLQAH--QETVKDFRLLQDSRLLSWSFD 1064 (1249)
T ss_dssp             TEEECCBCC--SSCEEEEEECSSSEEEEEESS
T ss_pred             CceEEEecC--CCcEEEEEEcCCCcEEEEECC
Confidence            876644322  222223333344445555543

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=93.77  E-value=2.7  Score=38.22  Aligned_cols=133  Identities=11%  Similarity=-0.037  Sum_probs=64.8

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ...+..+|..+.+............-.+++.. ++.++++|+.+      ..+.+||..+.+-...-....   ..-.++
T Consensus       112 d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~---~~v~~~  182 (401)
T 4aez_A          112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGN------GLVDIYDVESQTKLRTMAGHQ---ARVGCL  182 (401)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCCS---SCEEEE
T ss_pred             CCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCC------CeEEEEECcCCeEEEEecCCC---CceEEE
Confidence            44677888887776554443322211222222 55677777654      247888988765433211111   112233


Q ss_pred             EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .. ++.+++.|+.+        ..+..||..+..-....-......-.++... ++.+++.|+.++     .+..|++
T Consensus       183 ~~-~~~~l~~~~~d--------g~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~-----~v~iwd~  246 (401)
T 4aez_A          183 SW-NRHVLSSGSRS--------GAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDN-----VVQIWDA  246 (401)
T ss_dssp             EE-ETTEEEEEETT--------SEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTS-----CEEEEET
T ss_pred             EE-CCCEEEEEcCC--------CCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----eEEEccC
Confidence            33 45566666543        3578888874321110000111111222222 566777776543     4555653

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=93.70  E-value=0.92  Score=42.01  Aligned_cols=144  Identities=7%  Similarity=-0.082  Sum_probs=67.3

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCC-CceeEEe--eecccccccccCcceEeecCCCCCeEEccC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQK-GENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKA  107 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~  107 (381)
                      ++.+.+.|+.++     .+..||..+..  ..+....+.. -.++.-.  .+.....+ .....+..+|..++....+..
T Consensus       131 ~~~~lasGs~dg-----~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~-s~D~~v~iwd~~~~~~~~~~~  204 (435)
T 4e54_B          131 HPSTVAVGSKGG-----DIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS-SMEGTTRLQDFKGNILRVFAS  204 (435)
T ss_dssp             CTTCEEEEETTS-----CEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEE-CSSSCEEEEETTSCEEEEEEC
T ss_pred             CCCEEEEEeCCC-----EEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEE-eCCCEEEEeeccCCceeEEec
Confidence            556778887666     67889987766  2222211111 1111111  11111111 122356677776655443332


Q ss_pred             CCCCCC-CceEE-EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCC
Q 016877          108 APVPRL-DGAAI-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGP  183 (381)
Q Consensus       108 ~p~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~  183 (381)
                      ...... ..++. .-++.+++.|+.++      .+.++|.....-..+....    ..-.+++..  ++.+++.|+.++ 
T Consensus       205 ~~~~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~~h~----~~v~~v~~~p~~~~~~~s~s~d~-  273 (435)
T 4e54_B          205 SDTINIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLRMHK----KKVTHVALNPCCDWFLATASVDQ-  273 (435)
T ss_dssp             CSSCSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSBCCS----SCEEEEEECTTCSSEEEEEETTS-
T ss_pred             cCCCCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEeccc----ceEEeeeecCCCceEEEEecCcc-
Confidence            222111 12222 23567778887642      4778888654322221111    111233332  344666776544 


Q ss_pred             CCCCCcceEEEEECCCC
Q 016877          184 QCRGPTAHTFVLDTETK  200 (381)
Q Consensus       184 ~~~~~~~~~~~yd~~~~  200 (381)
                             .+..||..+.
T Consensus       274 -------~v~iwd~~~~  283 (435)
T 4e54_B          274 -------TVKIWDLRQV  283 (435)
T ss_dssp             -------BCCEEETTTC
T ss_pred             -------eeeEEecccc
Confidence                   2556787654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=93.63  E-value=3.5  Score=39.52  Aligned_cols=101  Identities=9%  Similarity=0.106  Sum_probs=46.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CC-EEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GR-YIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +++.+++++.+...  ...++.+|... .-..+....    ..-.+++.. ++ .+++.|+.+        ..+..||..
T Consensus       127 ~~~~l~~~~~~~~~--~~~v~~~d~~~-~~~~~~~~~----~~v~~~~~~~~~~~~l~~~~~d--------~~v~vwd~~  191 (615)
T 1pgu_A          127 EGRRLCVVGEGRDN--FGVFISWDSGN-SLGEVSGHS----QRINACHLKQSRPMRSMTVGDD--------GSVVFYQGP  191 (615)
T ss_dssp             TSSEEEEEECCSSC--SEEEEETTTCC-EEEECCSCS----SCEEEEEECSSSSCEEEEEETT--------TEEEEEETT
T ss_pred             CCCEEEEeccCCCC--ccEEEEEECCC-cceeeecCC----ccEEEEEECCCCCcEEEEEeCC--------CcEEEEeCC
Confidence            45666666654322  23577777332 222222111    112233333 23 266666543        357788877


Q ss_pred             CCcEEeCCCCCC-CC---cccEEEEE-C-CEEEEEccCCCCCCCCCccceE
Q 016877          199 TKKWQDLPPLPV-PR---YAPATQLW-R-GRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       199 ~~~W~~~~~~p~-~r---~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      +.+-..  .+.. ..   .-.+++.. + +++++.|+.++     .+..|+
T Consensus       192 ~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg-----~i~vwd  235 (615)
T 1pgu_A          192 PFKFSA--SDRTHHKQGSFVRDVEFSPDSGEFVITVGSDR-----KISCFD  235 (615)
T ss_dssp             TBEEEE--EECSSSCTTCCEEEEEECSTTCCEEEEEETTC-----CEEEEE
T ss_pred             Ccceee--eecccCCCCceEEEEEECCCCCCEEEEEeCCC-----eEEEEE
Confidence            654322  1221 11   22233333 4 56777776543     355565

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.62  E-value=0.36  Score=43.28  Aligned_cols=96  Identities=11%  Similarity=0.101  Sum_probs=46.8

Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCC--CCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeee
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP--VPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      ++++++.||.++        .+..+|.++..|.....+.  ....-.+++. -++++++.|+.++     .+..|+..  
T Consensus        27 ~g~~las~~~D~--------~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~-----~v~iw~~~--   91 (345)
T 3fm0_A           27 AGTLLASCGGDR--------RIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA-----TTCIWKKN--   91 (345)
T ss_dssp             TSSCEEEEETTS--------CEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTS-----CEEEEEEC--
T ss_pred             CCCEEEEEcCCC--------eEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCC-----cEEEEEcc--
Confidence            556677776544        3667787777765332111  1122222222 2566777777543     45666542  


Q ss_pred             cCCccCCceEEecCCCCCCcceeEEEe--CCEEEEEccCCC
Q 016877          248 DGKPLEKEWRTEIPIPRGGPHRACVVV--DDRLLVIGGQEG  286 (381)
Q Consensus       248 ~~~~~~~~W~~~~~~p~~~~~~~~~~~--~~~l~v~GG~~~  286 (381)
                           +..++.+..+........++.+  ++++++.|+.++
T Consensus        92 -----~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~  127 (345)
T 3fm0_A           92 -----QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDK  127 (345)
T ss_dssp             -----CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             -----CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCC
Confidence                 3333333222211111223333  567777777654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.62  E-value=1.4  Score=40.20  Aligned_cols=96  Identities=9%  Similarity=-0.053  Sum_probs=48.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEec-----CCCCCCCCccceEEEEEeCC--EEEEEcCCCCCCCCCCcceEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-----RFDMPREMAHSHLGMVTDGR--YIYVVTGQYGPQCRGPTAHTF  193 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-----~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~~~  193 (381)
                      ++.+++.|+.+      ..+.+||..++....     +..+... ...-.+++...+  .+++.|+.++        .+.
T Consensus        93 ~~~~l~s~s~d------g~v~vw~~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~p~~~~~l~s~~~dg--------~i~  157 (402)
T 2aq5_A           93 NDNVIASGSED------CTVMVWEIPDGGLVLPLREPVITLEGH-TKRVGIVAWHPTAQNVLLSAGCDN--------VIL  157 (402)
T ss_dssp             CTTEEEEEETT------SEEEEEECCTTCCSSCBCSCSEEEECC-SSCEEEEEECSSBTTEEEEEETTS--------CEE
T ss_pred             CCCEEEEEeCC------CeEEEEEccCCCCccccCCceEEecCC-CCeEEEEEECcCCCCEEEEEcCCC--------EEE
Confidence            55777788754      247888888765421     1111111 111223344332  4677776443        478


Q ss_pred             EEECCCCcEEeCCC-CCCCCcccEEEEE-CCEEEEEccCC
Q 016877          194 VLDTETKKWQDLPP-LPVPRYAPATQLW-RGRLHVMGGSG  231 (381)
Q Consensus       194 ~yd~~~~~W~~~~~-~p~~r~~~~~~~~-~~~lyv~GG~~  231 (381)
                      .||..+.+....-. ......-.+++.. ++++++.|+.+
T Consensus       158 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  197 (402)
T 2aq5_A          158 VWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD  197 (402)
T ss_dssp             EEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETT
T ss_pred             EEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecC
Confidence            89998876533211 1122222233332 56667776644

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.56  E-value=4  Score=36.77  Aligned_cols=101  Identities=7%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCC--CCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF--DMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~--~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ..++.|+.+      ..+.++|+.+.+-...-  ..+......-.++..  .++.+++.|+.++        .+..||..
T Consensus       171 ~~l~s~s~D------~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~--------~v~~wd~~  236 (380)
T 3iz6_a          171 TRLITGSGD------QTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT--------TVRLWDLR  236 (380)
T ss_dssp             SCEEEECTT------SCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS--------CEEEEETT
T ss_pred             CEEEEECCC------CcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC--------eEEEEECC
Confidence            445566544      34778898877644321  111110111222333  2567888887654        36778876


Q ss_pred             CCc--EEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCCCCCCccceEe
Q 016877          199 TKK--WQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       199 ~~~--W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ...  -..+..  ....-.+++.. +++.++.|+.++     .+..|++
T Consensus       237 ~~~~~~~~~~~--h~~~v~~v~~~p~~~~l~s~s~D~-----~i~lwd~  278 (380)
T 3iz6_a          237 ITSRAVRTYHG--HEGDINSVKFFPDGQRFGTGSDDG-----TCRLFDM  278 (380)
T ss_dssp             TTCCCCEEECC--CSSCCCEEEECTTSSEEEEECSSS-----CEEEEET
T ss_pred             CCCcceEEECC--cCCCeEEEEEecCCCeEEEEcCCC-----eEEEEEC
Confidence            321  111111  11111233332 566777776543     4566653

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=93.52  E-value=3  Score=39.11  Aligned_cols=59  Identities=14%  Similarity=0.190  Sum_probs=37.4

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      ++++|+|-|        +..|.||..+++.... ..|. .+. --++....+++|+|-|          +..++||+.+.
T Consensus       158 ~~~~yfFkG--------~~yw~yd~~~~~~~~~-~w~g-i~~-iDAA~~~~g~~YfFkG----------~~y~rfd~~~~  216 (460)
T 1qhu_A          158 DEGILFFQG--------NRKWFWDLTTGTKKER-SWPA-VGN-CTSALRWLGRYYCFQG----------NQFLRFNPVSG  216 (460)
T ss_dssp             SSEEEEEET--------TEEEEEETTTTEEEEE-CCTT-SCC-CSEEEEETTEEEEEET----------TEEEEECTTTC
T ss_pred             CCeEEEEec--------ccEEEEecccceeecc-cCCC-CCc-cchheeeCCceEEEEC----------CEEEEEcCccC
Confidence            678898887        2479999988765431 1111 112 1234445689999976          56788887654

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=93.45  E-value=3.8  Score=40.43  Aligned_cols=104  Identities=14%  Similarity=0.023  Sum_probs=48.1

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCC---EEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGR---YIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.|+.+.      .+.++|.....=..+..........-.+++...+   .+++.|+.++        .+..||.
T Consensus       483 ~~~~l~s~s~D~------~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~--------~v~vwd~  548 (694)
T 3dm0_A          483 DNRQIVSASRDR------TIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDK--------TVKVWNL  548 (694)
T ss_dssp             TSSCEEEEETTS------CEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTS--------CEEEEET
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCC--------eEEEEEC
Confidence            456667776542      4667776544322221111110111223333322   3556665443        3778888


Q ss_pred             CCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          198 ETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       198 ~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .+.+-...-.-. ...-.+++. -++++++.|+.++     .+..|++
T Consensus       549 ~~~~~~~~~~~h-~~~v~~v~~spdg~~l~sg~~Dg-----~i~iwd~  590 (694)
T 3dm0_A          549 SNCKLRSTLAGH-TGYVSTVAVSPDGSLCASGGKDG-----VVLLWDL  590 (694)
T ss_dssp             TTCCEEEEECCC-SSCEEEEEECTTSSEEEEEETTS-----BCEEEET
T ss_pred             CCCcEEEEEcCC-CCCEEEEEEeCCCCEEEEEeCCC-----eEEEEEC
Confidence            776533211111 111122222 2567777777543     4566653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=93.35  E-value=4.6  Score=36.76  Aligned_cols=103  Identities=12%  Similarity=0.060  Sum_probs=54.4

Q ss_pred             eEeecCCC--CCeEEccCCCCCCCCceEEEE---CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCC---CCCCcc-
Q 016877           92 FQDLPAPE--LKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDM---PREMAH-  162 (381)
Q Consensus        92 ~~~~~~~~--~~W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~~~r-  162 (381)
                      ++.++...  .+|+.+.+......-++++..   ++.||+.+.....   -.-+++.+-...+|+.+...   +....+ 
T Consensus        33 l~~~~~~~~g~~W~~~~~~~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~  109 (394)
T 3b7f_A           33 AWFLASDPARRTWELRGPVFLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKAPEGE  109 (394)
T ss_dssp             EEEEEECTTSCSEEEEEEESTTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCCC---
T ss_pred             eEEEECCCCCCCceECCccCCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCccccc
Confidence            34444433  689876422111222333332   4578876542111   12477777777899987532   211011 


Q ss_pred             ------ceEEEEEe----CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC
Q 016877          163 ------SHLGMVTD----GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP  206 (381)
Q Consensus       163 ------~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~  206 (381)
                            .-.+++..    .+.||+.+-         ..-+++.+-...+|+.+.
T Consensus       110 ~~~~~~~i~~l~~~~~~~~~~l~~g~~---------~ggl~~S~DgG~tW~~~~  154 (394)
T 3b7f_A          110 TGRVVDHVFWLTPGHASEPGTWYAGTS---------PQGLFRSTDHGASWEPVA  154 (394)
T ss_dssp             -CCCCCEEEEEEECCTTSTTCEEEEEE---------TTEEEEESSTTSBCEECH
T ss_pred             ccccccceeEEEeCCCCCCCEEEEEec---------CCcEEEEcCCCCCeEECc
Confidence                  11233443    577887542         234888888888999985

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.31  E-value=4.2  Score=36.17  Aligned_cols=100  Identities=8%  Similarity=-0.056  Sum_probs=49.1

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      .++.+|..+.+.+.+.........+.+..-++ .||+....+..... -.+|.+|..+.+.+.+...+... .....++.
T Consensus        30 ~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~-v~~~~~~~~~g~~~~~~~~~~~~-~~p~~~~~  107 (361)
T 3scy_A           30 YTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAA-VSAFAFDKEKGTLHLLNTQKTMG-ADPCYLTT  107 (361)
T ss_dssp             EEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCE-EEEEEEETTTTEEEEEEEEECSS-SCEEEEEE
T ss_pred             EEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCc-EEEEEEeCCCCcEEEeeEeccCC-CCcEEEEE
Confidence            35566777777766654421121222222344 57766543211111 12556666667777665443211 12233344


Q ss_pred             eCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          170 DGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       170 ~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      .++.+|+....        ...+..|+..++
T Consensus       108 dg~~l~~~~~~--------~~~v~~~~~~~~  130 (361)
T 3scy_A          108 NGKNIVTANYS--------GGSITVFPIGQD  130 (361)
T ss_dssp             CSSEEEEEETT--------TTEEEEEEBCTT
T ss_pred             CCCEEEEEECC--------CCEEEEEEeCCC
Confidence            55567766421        245778887643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.31  E-value=1.2  Score=44.84  Aligned_cols=123  Identities=3%  Similarity=-0.064  Sum_probs=56.6

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecC-CCCCCCCccceEEEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGR-FDMPREMAHSHLGMVT  169 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~-~~~~~~~~r~~~~~~~  169 (381)
                      .+..+|..+.+....-..+..........-++..+++|+.+      ..+.+||..+.+.... .....    .-.+++.
T Consensus        36 ~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~~~~----~v~~~~~  105 (814)
T 3mkq_A           36 RVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHPD----YIRSIAV  105 (814)
T ss_dssp             EEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETT------SEEEEEETTTCCEEEEEECCSS----CEEEEEE
T ss_pred             EEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEecCCC----CEEEEEE
Confidence            56677766654322111111111111222355667777653      3588899887765432 11111    1122333


Q ss_pred             e-CCEEEEEcCCCCCCCCCCcceEEEEECCCC-cEEeCCCCCCCCcccEEEEE--CCEEEEEccCCC
Q 016877          170 D-GRYIYVVTGQYGPQCRGPTAHTFVLDTETK-KWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGE  232 (381)
Q Consensus       170 ~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~  232 (381)
                      . ++...+.|+.+        ..+..||..+. .....-. .....-.+++..  ++.+++.|+.++
T Consensus       106 s~~~~~l~~~~~d--------g~i~vw~~~~~~~~~~~~~-~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A          106 HPTKPYVLSGSDD--------LTVKLWNWENNWALEQTFE-GHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             CSSSSEEEEEETT--------SEEEEEEGGGTSEEEEEEE-CCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             eCCCCEEEEEcCC--------CEEEEEECCCCceEEEEEc-CCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            2 44455565533        34778888765 2222111 111122233333  456777776543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=93.31  E-value=0.83  Score=40.49  Aligned_cols=105  Identities=9%  Similarity=-0.021  Sum_probs=50.0

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.+      ..+.+||..+.+-...-.-..   ..-.+++.. +++.++.|+.+        ..+..||..+
T Consensus        43 ~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~  105 (369)
T 3zwl_B           43 EGDLLFSCSKD------SSASVWYSLNGERLGTLDGHT---GTIWSIDVDCFTKYCVTGSAD--------YSIKLWDVSN  105 (369)
T ss_dssp             TSCEEEEEESS------SCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------TEEEEEETTT
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCchhhhhhhhcC---CcEEEEEEcCCCCEEEEEeCC--------CeEEEEECCC
Confidence            45666677654      247888887765433211111   112233333 45556666543        3588889887


Q ss_pred             CcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .+-...-..  ...-.++.. -+++.++.++.+..........|++
T Consensus       106 ~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~  149 (369)
T 3zwl_B          106 GQCVATWKS--PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEI  149 (369)
T ss_dssp             CCEEEEEEC--SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEE
T ss_pred             CcEEEEeec--CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEe
Confidence            664333221  111222222 2455555555431112234555554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.22  E-value=4.1  Score=35.82  Aligned_cols=94  Identities=10%  Similarity=-0.002  Sum_probs=47.3

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE---CCEEEEEecCCCCCCcccceEEEeCCCCeEecCC-CCCCCCccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRF-DMPREMAHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~-~~~~~~~r~~~  165 (381)
                      ..+..+|..+.+-..  .+........++.+   ++.+++.|+.+      ..+.+||..+.+-...- .+... ...-.
T Consensus        95 g~i~v~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~-~~~v~  165 (366)
T 3k26_A           95 GIIRIINPITMQCIK--HYVGHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTDTLVAIFGGVEGH-RDEVL  165 (366)
T ss_dssp             CEEEEECTTTCCEEE--EEESCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTTEEEEEECSTTSC-SSCEE
T ss_pred             CEEEEEEchhceEee--eecCCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecCeEEEEecccccc-cCcee
Confidence            457788877654322  12111112222222   45677777764      24888999877644321 11111 11222


Q ss_pred             EEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          166 GMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       166 ~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +++.. ++..++.|+.++        .+..||..+.
T Consensus       166 ~~~~~~~~~~l~~~~~dg--------~i~i~d~~~~  193 (366)
T 3k26_A          166 SADYDLLGEKIMSCGMDH--------SLKLWRINSK  193 (366)
T ss_dssp             EEEECTTSSEEEEEETTS--------CEEEEESCSH
T ss_pred             EEEECCCCCEEEEecCCC--------CEEEEECCCC
Confidence            33332 455566666433        4778888764

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=93.19  E-value=2.1  Score=38.56  Aligned_cols=108  Identities=8%  Similarity=-0.038  Sum_probs=53.4

Q ss_pred             EEECCEEEEEecCCCCCCcccceEEEeCCCCe----EecCCCCCCCCccceEEEEEe-C----C---EEEEEcCCCCCCC
Q 016877          118 IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT----WGGRFDMPREMAHSHLGMVTD-G----R---YIYVVTGQYGPQC  185 (381)
Q Consensus       118 ~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~r~~~~~~~~-~----~---~iyv~GG~~~~~~  185 (381)
                      +.+...+++.|+.+      ..+.+||..+.+    +..+..+... ...-.+++.. +    +   .+++.|+.++   
T Consensus        22 ~~~~~~~l~s~~~d------g~i~iw~~~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg---   91 (397)
T 1sq9_A           22 VSACNSFTVSCSGD------GYLKVWDNKLLDNENPKDKSYSHFVH-KSGLHHVDVLQAIERDAFELCLVATTSFSG---   91 (397)
T ss_dssp             EEECSSEEEEEETT------SEEEEEESBCCTTCCGGGGEEEEECC-TTCEEEEEEEEEEETTTEEEEEEEEEETTS---
T ss_pred             EEecCCeEEEEcCC------CEEEEEECCCcccccCCCcceEEecC-CCcEEEEEEecccccCCccccEEEEEcCCC---
Confidence            33444677777654      247788887765    2222111111 0111223332 3    5   6777776543   


Q ss_pred             CCCcceEEEEECCCCc------EEeCCCCCCC---CcccEEEEE-----CCEE-EEEccCCCCCCCCCccceEee
Q 016877          186 RGPTAHTFVLDTETKK------WQDLPPLPVP---RYAPATQLW-----RGRL-HVMGGSGENRYTPEVDHWSLA  245 (381)
Q Consensus       186 ~~~~~~~~~yd~~~~~------W~~~~~~p~~---r~~~~~~~~-----~~~l-yv~GG~~~~~~~~~~~~~~~~  245 (381)
                           .+..||..+..      +..+...+..   ..-.++...     ++.. ++.|+.++     .+..|++.
T Consensus        92 -----~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg-----~i~iwd~~  156 (397)
T 1sq9_A           92 -----DLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKG-----TTYIWKFH  156 (397)
T ss_dssp             -----CEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTS-----CEEEEEEE
T ss_pred             -----CEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCC-----cEEEEeCC
Confidence                 37777777665      6665543311   222233333     4556 77776543     46667654

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=93.18  E-value=3.8  Score=36.62  Aligned_cols=51  Identities=12%  Similarity=0.063  Sum_probs=24.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTD  147 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~  147 (381)
                      .+..+|..+.+-...-..+.......+..-++..++.||.++      .+.+|+...
T Consensus        87 ~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~------~i~v~~~~~  137 (354)
T 2pbi_B           87 KVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDN------KCSVYPLTF  137 (354)
T ss_dssp             EEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTS------EEEEEECCC
T ss_pred             eEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCC------CEEEEEEec
Confidence            455666555543322222222111122223567778887653      356666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.05  E-value=4.6  Score=35.88  Aligned_cols=51  Identities=4%  Similarity=0.027  Sum_probs=24.9

Q ss_pred             eEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCCCCcccceEEEeCCCC
Q 016877           92 FQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSIDYVHSHVDIYNFTDN  148 (381)
Q Consensus        92 ~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~yd~~~~  148 (381)
                      ++.++..+.+.+.+...+..........+++ .||+....+      ..+.+|+..++
T Consensus        79 ~~~~~~~~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~------~~v~~~~~~~~  130 (361)
T 3scy_A           79 AFAFDKEKGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSG------GSITVFPIGQD  130 (361)
T ss_dssp             EEEEETTTTEEEEEEEEECSSSCEEEEEECSSEEEEEETTT------TEEEEEEBCTT
T ss_pred             EEEEeCCCCcEEEeeEeccCCCCcEEEEECCCEEEEEECCC------CEEEEEEeCCC
Confidence            3455555566666554432222222222255 566655321      34777887643

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=92.99  E-value=2.8  Score=37.61  Aligned_cols=65  Identities=2%  Similarity=-0.067  Sum_probs=35.1

Q ss_pred             cceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877          138 SHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (381)
Q Consensus       138 ~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (381)
                      ..++.+|+.+.+-+.+...+.   ...+....- +++..++.......  .....++.+|+.+...+.+..
T Consensus       168 ~~l~~~d~~~g~~~~l~~~~~---~~~~~~~sp~dg~~l~~~~~~~~~--~~~~~l~~~d~~~~~~~~l~~  233 (388)
T 3pe7_A          168 CRLMRVDLKTGESTVILQENQ---WLGHPIYRPYDDSTVAFCHEGPHD--LVDARMWLINEDGTNMRKVKT  233 (388)
T ss_dssp             EEEEEEETTTCCEEEEEEESS---CEEEEEEETTEEEEEEEEECSCTT--TSSCSEEEEETTSCCCEESCC
T ss_pred             ceEEEEECCCCceEEeecCCc---cccccEECCCCCCEEEEEEecCCC--CCcceEEEEeCCCCceEEeee
Confidence            569999999887665543222   222222223 44433333222111  114579999998877666654

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.71  E-value=1.6  Score=37.98  Aligned_cols=62  Identities=5%  Similarity=-0.014  Sum_probs=33.1

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ++.+++.|+.+      ..+.++|..+.+-.. +....    ..-.+++.. ++.+++.|+.++        .+..+|.+
T Consensus        66 ~~~~l~s~s~d------~~i~vwd~~~~~~~~~~~~h~----~~v~~~~~~~~~~~l~sgs~D~--------~v~lWd~~  127 (304)
T 2ynn_A           66 RKNWIIVGSDD------FRIRVFNYNTGEKVVDFEAHP----DYIRSIAVHPTKPYVLSGSDDL--------TVKLWNWE  127 (304)
T ss_dssp             GGTEEEEEETT------SEEEEEETTTCCEEEEEECCS----SCEEEEEECSSSSEEEEEETTS--------CEEEEEGG
T ss_pred             CCCEEEEECCC------CEEEEEECCCCcEEEEEeCCC----CcEEEEEEcCCCCEEEEECCCC--------eEEEEECC
Confidence            55667777654      247788887764322 11111    112233333 455666666543        36677776


Q ss_pred             CC
Q 016877          199 TK  200 (381)
Q Consensus       199 ~~  200 (381)
                      +.
T Consensus       128 ~~  129 (304)
T 2ynn_A          128 NN  129 (304)
T ss_dssp             GT
T ss_pred             CC
Confidence            54

>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*

Probab=92.61  E-value=5.9  Score=36.09  Aligned_cols=185  Identities=16%  Similarity=0.124  Sum_probs=99.0

Q ss_pred             CCeEE--ccCCCCCCCCceEEEECCEEEEEecCCCCCCcccc-eEEEe----CCCCeEe-cCCCCCCCCccceEEEEEeC
Q 016877          100 LKWEK--MKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSH-VDIYN----FTDNTWG-GRFDMPREMAHSHLGMVTDG  171 (381)
Q Consensus       100 ~~W~~--l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~-~~~yd----~~~~~W~-~~~~~~~~~~r~~~~~~~~~  171 (381)
                      +.|++  |+.+|..-.-|+.+.+++.=|++|=.++.-.+..- +..|.    ...+.-+ .++.- ........++-.++
T Consensus       270 spW~~t~L~~i~~vTe~HSFa~i~~~~fa~GyHnGDv~PRe~G~~yfs~~~~sp~~~vrr~i~se-y~~~AsEPCvkyYd  348 (670)
T 3ju4_A          270 SPWRKTDLGLIPSVTEVHSFATIDNNGFAMGYHQGDVAPREVGLFYFPDAFNSPSNYVRRQIPSE-YEPDASEPCIKYYD  348 (670)
T ss_dssp             SCCEEEECCSCTTCSEEEEEEECSSSCEEEEEEECSSSSCEEEEEEETTTTTCTTCCEEEECCGG-GCTTEEEEEEEEET
T ss_pred             CCceecccccccceeeeeeeeEecCCceEEEeccCCCCcceeeEEEecccccCCcceeeeechhh-hccccccchhhhhC
Confidence            35643  45566556678899999888888865443322111 22221    1122222 22221 11134567788899


Q ss_pred             CEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCC-CCCCCCcccEEEEECCEEEEEccCCC----------CCCC---C
Q 016877          172 RYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLP-PLPVPRYAPATQLWRGRLHVMGGSGE----------NRYT---P  237 (381)
Q Consensus       172 ~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~-~~p~~r~~~~~~~~~~~lyv~GG~~~----------~~~~---~  237 (381)
                      +.+|+.---....  ..-+.+.+-+..-..|+.+. +-..-....-.+.+++.||+||-...          .+|.   |
T Consensus       349 gvLyLtTRgt~~~--~~GS~L~rs~d~Gq~w~slrfp~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~pD~RY~a~yP  426 (670)
T 3ju4_A          349 GVLYLITRGTRGD--RLGSSLHRSRDIGQTWESLRFPHNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAPDDRYKASYP  426 (670)
T ss_dssp             TEEEEEEEESCTT--SCCCEEEEESSTTSSCEEEECTTCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCCCCCSSCBCC
T ss_pred             CEEEEEecCcCCC--CCcceeeeecccCCchhheeccccccccCCCcceeCCEEEEEeccccccccccCCCcccccccCC
Confidence            9999986322221  12356777777788898875 22223333445678999999986432          1121   1


Q ss_pred             CccceEeeeecCCccCCceEEecC------CCCCCcce-eEEEeCCEE-EEEccCCCC
Q 016877          238 EVDHWSLAVKDGKPLEKEWRTEIP------IPRGGPHR-ACVVVDDRL-LVIGGQEGD  287 (381)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~W~~~~~------~p~~~~~~-~~~~~~~~l-~v~GG~~~~  287 (381)
                      ..-.-...+.+...+.-+|..+..      .-....+. ++|+-++-| |+|||++..
T Consensus       427 RtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~vKD~~lyyiFGgEd~~  484 (670)
T 3ju4_A          427 RTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVVKDNYIYYMFGGEDHF  484 (670)
T ss_dssp             EEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEEETTEEEEEEEEBCSC
T ss_pred             ceEEEEeecccCCccceEEEEeecceeccccccccccceeEEEeCCEEEEEecCcccC
Confidence            111122334444555668876532      12222333 344556665 678997643

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=92.59  E-value=2.7  Score=36.58  Aligned_cols=137  Identities=11%  Similarity=0.032  Sum_probs=63.8

Q ss_pred             eeeeeeCCCce--eeecCCCCC-CCceeEE--eee-cccccccccCcceEeecCCCCCeEEccCCCCCC----CCceEEE
Q 016877           50 IASNWSPYHNS--IILPNNGPQ-KGENIGV--KTK-KDVVPKRILPATFQDLPAPELKWEKMKAAPVPR----LDGAAIQ  119 (381)
Q Consensus        50 ~~~~~d~~~~~--~~~p~~~~~-~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r----~~~~~~~  119 (381)
                      .+..||+.+.+  ..++..... ...+++.  -+. .+...  .....+..+|..+.+-...-+.+.+-    .-..++.
T Consensus        12 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~--~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (337)
T 1pby_B           12 KLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAAL   89 (337)
T ss_dssp             EEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEE
T ss_pred             eEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEe--CCCCeEEEEECCCCCeEeeEEcCCcccccccccceEE
Confidence            67889998877  333321100 0111221  111 12211  12346788888776643322222100    1122333


Q ss_pred             E-CC-EEEEEecC---CCCCC--cccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcc
Q 016877          120 I-KN-LLYVFAGY---GSIDY--VHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTA  190 (381)
Q Consensus       120 ~-~~-~iyv~GG~---~~~~~--~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~  190 (381)
                      . ++ .+|+....   .....  ....+.+||+.+.+....-+.+..    ...++.  .++.+|+..           .
T Consensus        90 s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~~~~-----------~  154 (337)
T 1pby_B           90 SPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ----ITMLAWARDGSKLYGLG-----------R  154 (337)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS----CCCEEECTTSSCEEEES-----------S
T ss_pred             CCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC----cceeEECCCCCEEEEeC-----------C
Confidence            2 34 77776421   10110  125699999988765443222221    112233  234477662           3


Q ss_pred             eEEEEECCCCcEE
Q 016877          191 HTFVLDTETKKWQ  203 (381)
Q Consensus       191 ~~~~yd~~~~~W~  203 (381)
                      .++.+|+.+.+-.
T Consensus       155 ~i~~~d~~~~~~~  167 (337)
T 1pby_B          155 DLHVMDPEAGTLV  167 (337)
T ss_dssp             SEEEEETTTTEEE
T ss_pred             eEEEEECCCCcEe
Confidence            4889999887643

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.51  E-value=0.85  Score=40.17  Aligned_cols=104  Identities=9%  Similarity=0.018  Sum_probs=51.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe---CCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.|+.+      ..+.+||+.+++...+..+... ...-.+++..   ++.+++.|+.++        .+..+|+
T Consensus        24 ~g~~lasgs~D------~~v~lwd~~~~~~~~~~~l~gH-~~~V~~v~~~~~~~~~~l~s~s~D~--------~v~iWd~   88 (316)
T 3bg1_A           24 YGTRLATCSSD------RSVKIFDVRNGGQILIADLRGH-EGPVWQVAWAHPMYGNILASCSYDR--------KVIIWRE   88 (316)
T ss_dssp             GGCEEEEEETT------TEEEEEEEETTEEEEEEEEECC-SSCEEEEEECCGGGSSCEEEEETTS--------CEEEECC
T ss_pred             CCCEEEEEeCC------CeEEEEEecCCCcEEEEEEcCC-CccEEEEEeCCCCCCCEEEEEECCC--------EEEEEEC
Confidence            45677777754      2477788776654332222211 0111233332   255667776543        3778888


Q ss_pred             CCCcEEeCCCCC-CCCcccEEEEE-C--CEEEEEccCCCCCCCCCccceEe
Q 016877          198 ETKKWQDLPPLP-VPRYAPATQLW-R--GRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       198 ~~~~W~~~~~~p-~~r~~~~~~~~-~--~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ++..|..+..+. ....-.+++.. +  +.+++.|+.++     .+..|++
T Consensus        89 ~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~-----~i~lwd~  134 (316)
T 3bg1_A           89 ENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG-----AISLLTY  134 (316)
T ss_dssp             SSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSS-----CEEEEEE
T ss_pred             CCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCC-----CEEEEec
Confidence            877664433222 11112233332 2  45666666543     4555654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=92.42  E-value=2.8  Score=36.37  Aligned_cols=214  Identities=8%  Similarity=0.056  Sum_probs=100.5

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEe--eecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++.||++...+     +.+.+||+.++. .......  ...+++..  +.....    ....+..+|+.+.+++.+...+
T Consensus        24 ~~~l~~~d~~~-----~~i~~~d~~~~~~~~~~~~~--~~~~i~~~~dG~l~v~----~~~~l~~~d~~~g~~~~~~~~~   92 (297)
T 3g4e_A           24 SNSLLFVDIPA-----KKVCRWDSFTKQVQRVTMDA--PVSSVALRQSGGYVAT----IGTKFCALNWKEQSAVVLATVD   92 (297)
T ss_dssp             TTEEEEEETTT-----TEEEEEETTTCCEEEEECSS--CEEEEEEBTTSSEEEE----ETTEEEEEETTTTEEEEEEECC
T ss_pred             CCEEEEEECCC-----CEEEEEECCCCcEEEEeCCC--ceEEEEECCCCCEEEE----ECCeEEEEECCCCcEEEEEecC
Confidence            46777776533     367999998876 3332211  11112111  111111    1346889999888877765443


Q ss_pred             CC--CCCceEEEE--CCEEEEEecCCCC-----CCcccceEEEeCCCCeEecCC-CCCCCCccceEEEEEe--CCEEEEE
Q 016877          110 VP--RLDGAAIQI--KNLLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGGRF-DMPREMAHSHLGMVTD--GRYIYVV  177 (381)
Q Consensus       110 ~~--r~~~~~~~~--~~~iyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~~~-~~~~~~~r~~~~~~~~--~~~iyv~  177 (381)
                      ..  ........+  ++++|+..-....     ......++++|+.. +...+. .+.     ....++..  ++.+|+.
T Consensus        93 ~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~~-----~pngi~~spdg~~lyv~  166 (297)
T 3g4e_A           93 NDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFDQVD-----ISNGLDWSLDHKIFYYI  166 (297)
T ss_dssp             TTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEES-----BEEEEEECTTSCEEEEE
T ss_pred             CCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEeeccc-----cccceEEcCCCCEEEEe
Confidence            22  111222222  5677764321110     11224588888763 333221 111     12234443  4468887


Q ss_pred             cCCCCCCCCCCcceEEEEEC--CCCcEEe---CCCCCCC-CcccEEEE-ECCEEEEEccCCCCCCCCCccceEeeeecCC
Q 016877          178 TGQYGPQCRGPTAHTFVLDT--ETKKWQD---LPPLPVP-RYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSLAVKDGK  250 (381)
Q Consensus       178 GG~~~~~~~~~~~~~~~yd~--~~~~W~~---~~~~p~~-r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~  250 (381)
                      ...        ...+++||.  ++.....   +..++.. ..-..+++ -++.||+.....+     .       +..+|
T Consensus       167 ~~~--------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~-----~-------v~~~d  226 (297)
T 3g4e_A          167 DSL--------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGG-----R-------VIRLD  226 (297)
T ss_dssp             EGG--------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTT-----E-------EEEEC
T ss_pred             cCC--------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCC-----E-------EEEEc
Confidence            531        356788875  4544321   1112111 11123333 3567887742211     1       22234


Q ss_pred             ccCCceEEecCCCCCCcceeEEEeC----CEEEEEccCC
Q 016877          251 PLEKEWRTEIPIPRGGPHRACVVVD----DRLLVIGGQE  285 (381)
Q Consensus       251 ~~~~~W~~~~~~p~~~~~~~~~~~~----~~l~v~GG~~  285 (381)
                      +.+.+.....++|...  ..++.++    +.|||.....
T Consensus       227 ~~tG~~~~~i~~p~~~--~t~~~f~g~d~~~L~vt~~~~  263 (297)
T 3g4e_A          227 PVTGKRLQTVKLPVDK--TTSCCFGGKNYSEMYVTCARD  263 (297)
T ss_dssp             TTTCCEEEEEECSSSB--EEEEEEESGGGCEEEEEEBCT
T ss_pred             CCCceEEEEEECCCCC--ceEEEEeCCCCCEEEEEcCCc
Confidence            6656555444445332  2445553    4788876543

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=92.40  E-value=5.9  Score=35.80  Aligned_cols=91  Identities=8%  Similarity=0.003  Sum_probs=46.9

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      .+++.|+.+      ..+.++|..+.+....-..... ...-.+++.. ++.+++.|+.+        ..+..||+.+.+
T Consensus       145 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~~~  209 (402)
T 2aq5_A          145 NVLLSAGCD------NVILVWDVGTGAAVLTLGPDVH-PDTIYSVDWSRDGALICTSCRD--------KRVRVIEPRKGT  209 (402)
T ss_dssp             TEEEEEETT------SCEEEEETTTTEEEEEECTTTC-CSCEEEEEECTTSSCEEEEETT--------SEEEEEETTTTE
T ss_pred             CEEEEEcCC------CEEEEEECCCCCccEEEecCCC-CCceEEEEECCCCCEEEEEecC--------CcEEEEeCCCCc
Confidence            577777764      2488899988765542210110 1122333333 55566666543        458899998865


Q ss_pred             EEeCC-CCCC-CCcccEEEEECCEEEEEc
Q 016877          202 WQDLP-PLPV-PRYAPATQLWRGRLHVMG  228 (381)
Q Consensus       202 W~~~~-~~p~-~r~~~~~~~~~~~lyv~G  228 (381)
                      -...- .... .+....+..-++++++.|
T Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          210 VVAEKDRPHEGTRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             EEEEEECSSCSSSCCEEEECSTTEEEEEE
T ss_pred             eeeeeccCCCCCcceEEEEcCCCcEEEEe
Confidence            43221 1111 112222223467777776

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=92.32  E-value=1.7  Score=38.35  Aligned_cols=88  Identities=8%  Similarity=-0.073  Sum_probs=47.0

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE---eCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT---DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++..++.|+.+      ..+.+||..+.+.........+    -.++..   .++.+++.|+.+        ..+..||.
T Consensus        97 ~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~d--------g~i~vwd~  158 (368)
T 3mmy_A           97 DGSKVFTASCD------KTAKMWDLSSNQAIQIAQHDAP----VKTIHWIKAPNYSCVMTGSWD--------KTLKFWDT  158 (368)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC----EEEEEEEECSSCEEEEEEETT--------SEEEEECS
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCCceeeccccCc----eEEEEEEeCCCCCEEEEccCC--------CcEEEEEC
Confidence            55666677654      3588899988876654332221    122332   356677777644        34788888


Q ss_pred             CCCcEEeCCCCCCCCcccEEEEECCEEEEEc
Q 016877          198 ETKKWQDLPPLPVPRYAPATQLWRGRLHVMG  228 (381)
Q Consensus       198 ~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~G  228 (381)
                      .+.+-  +..+.......+.....+.+++..
T Consensus       159 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          159 RSSNP--MMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             SCSSC--SEEEECSSCEEEEEEETTEEEEEE
T ss_pred             CCCcE--EEEEecCCCceEEEecCCeeEEEe
Confidence            76541  111222223333444555555543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=92.10  E-value=3.7  Score=36.08  Aligned_cols=89  Identities=7%  Similarity=-0.084  Sum_probs=46.1

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEE----ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQ----IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~  165 (381)
                      ..+..+|..+.+...+...   .....++.    -++.+++.|+.+      ..+.+||+.+.+-..  .+..+  ....
T Consensus       108 g~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~--~~~~~--~~~~  174 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQH---DAPVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSNPMM--VLQLP--ERCY  174 (368)
T ss_dssp             SEEEEEETTTTEEEEEEEC---SSCEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSSCSE--EEECS--SCEE
T ss_pred             CcEEEEEcCCCCceeeccc---cCceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCcEEE--EEecC--CCce
Confidence            3577778777665443221   11122222    255777787764      248888887654222  11211  1233


Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +.....+.+++.+.         ...+..||....
T Consensus       175 ~~~~~~~~~~~~~~---------~~~i~~~~~~~~  200 (368)
T 3mmy_A          175 CADVIYPMAVVATA---------ERGLIVYQLENQ  200 (368)
T ss_dssp             EEEEETTEEEEEEG---------GGCEEEEECSSS
T ss_pred             EEEecCCeeEEEeC---------CCcEEEEEeccc
Confidence            44555665555433         244677777654

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=92.06  E-value=2.6  Score=38.59  Aligned_cols=64  Identities=9%  Similarity=0.030  Sum_probs=34.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.++      .+.+||+.+.+-..  .+... ...-.+++.. ++..++.|+.+        ..+..||..+
T Consensus       161 ~~~~l~sgs~D~------~i~iwd~~~~~~~~--~~~~h-~~~V~~v~~~p~~~~l~s~s~D--------~~i~~wd~~~  223 (410)
T 1vyh_C          161 SGKLLASCSADM------TIKLWDFQGFECIR--TMHGH-DHNVSSVSIMPNGDHIVSASRD--------KTIKMWEVQT  223 (410)
T ss_dssp             TSSEEEEEETTS------CCCEEETTSSCEEE--CCCCC-SSCEEEEEECSSSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCceeE--EEcCC-CCCEEEEEEeCCCCEEEEEeCC--------CeEEEEECCC
Confidence            457778887653      35667876554322  22221 1112233332 44556666643        3477888877


Q ss_pred             Cc
Q 016877          200 KK  201 (381)
Q Consensus       200 ~~  201 (381)
                      ..
T Consensus       224 ~~  225 (410)
T 1vyh_C          224 GY  225 (410)
T ss_dssp             CC
T ss_pred             Cc
Confidence            65

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=91.84  E-value=2.9  Score=38.33  Aligned_cols=90  Identities=9%  Similarity=0.040  Sum_probs=43.1

Q ss_pred             eeeeeeCCCce-eeecC-CCCCCC-ceeEEee-ecccccccccCcceEeecCCCCCeEEccCCCCCCCCceEEEECCEEE
Q 016877           50 IASNWSPYHNS-IILPN-NGPQKG-ENIGVKT-KKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLY  125 (381)
Q Consensus        50 ~~~~~d~~~~~-~~~p~-~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iy  125 (381)
                      ++..||..+++ ..+.. ..+... .+++-.. +.....+ .....+..+|..+.+-..  .+........+...++.++
T Consensus       126 tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasg-s~Dg~v~iWd~~~~~~~~--~~~~h~~~v~~~s~~~~~l  202 (420)
T 4gga_A          126 SVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVG-TSSAEVQLWDVQQQKRLR--NMTSHSARVGSLSWNSYIL  202 (420)
T ss_dssp             EEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEE-ETTSCEEEEETTTTEEEE--EECCCSSCEEEEEEETTEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEE-ECCCeEEEEEcCCCcEEE--EEeCCCCceEEEeeCCCEE
Confidence            68899999887 43322 111111 1111111 1111111 123356777776654322  2222222334455677788


Q ss_pred             EEecCCCCCCcccceEEEeCCCC
Q 016877          126 VFAGYGSIDYVHSHVDIYNFTDN  148 (381)
Q Consensus       126 v~GG~~~~~~~~~~~~~yd~~~~  148 (381)
                      +.|+.+.      .+..+|....
T Consensus       203 ~sgs~d~------~i~~~d~~~~  219 (420)
T 4gga_A          203 SSGSRSG------HIHHHDVRVA  219 (420)
T ss_dssp             EEEETTS------EEEEEETTSS
T ss_pred             EEEeCCC------ceeEeeeccc
Confidence            8887642      3666676544

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=91.71  E-value=6.2  Score=34.34  Aligned_cols=125  Identities=4%  Similarity=-0.092  Sum_probs=59.2

Q ss_pred             CcceEeecC-CCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCC---e----EecCCCCCCCC
Q 016877           89 PATFQDLPA-PELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN---T----WGGRFDMPREM  160 (381)
Q Consensus        89 ~~~~~~~~~-~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~----W~~~~~~~~~~  160 (381)
                      ...+..+|. .+.+-..+...+....-..+....+.+++.|+.+      ..+.+||+.+.   .    .+.+..+..+ 
T Consensus        78 dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~-  150 (342)
T 1yfq_A           78 QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD------GLIEVIDPRNYGDGVIAVKNLNSNNTKVK-  150 (342)
T ss_dssp             TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT------SEEEEECHHHHTTBCEEEEESCSSSSSSC-
T ss_pred             CCeEEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC------CeEEEEcccccccccccccCCeeeEEeeC-
Confidence            346778888 7766555443111111122222225556666654      24777777640   0    2223333321 


Q ss_pred             ccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC-Cc--EEeCCCCCCCCcccEEEEE--CCEEEEEccCC
Q 016877          161 AHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET-KK--WQDLPPLPVPRYAPATQLW--RGRLHVMGGSG  231 (381)
Q Consensus       161 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~-~~--W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~  231 (381)
                       ..-.+++...+. ++.|+.+        ..+..||..+ ..  ..... .+....-.+++..  ++++++.|+.+
T Consensus       151 -~~v~~~~~~~~~-l~~~~~d--------~~i~i~d~~~~~~~~~~~~~-~~~~~~i~~i~~~~~~~~~l~~~~~d  215 (342)
T 1yfq_A          151 -NKIFTMDTNSSR-LIVGMNN--------SQVQWFRLPLCEDDNGTIEE-SGLKYQIRDVALLPKEQEGYACSSID  215 (342)
T ss_dssp             -CCEEEEEECSSE-EEEEEST--------TEEEEEESSCCTTCCCEEEE-CSCSSCEEEEEECSGGGCEEEEEETT
T ss_pred             -CceEEEEecCCc-EEEEeCC--------CeEEEEECCccccccceeee-cCCCCceeEEEECCCCCCEEEEEecC
Confidence             223455556666 4455432        4588899887 32  21111 1111122233333  46677777654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=91.71  E-value=6.6  Score=34.62  Aligned_cols=65  Identities=8%  Similarity=0.073  Sum_probs=37.6

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.++      .+.+||+.+.+-.........  ..-.+++. -++.+++.|+.++        .+..||..+
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~--~~i~~~~~~pdg~~lasg~~dg--------~i~iwd~~~  201 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKSD--VEYSSGVLHKDSLLLALYSPDG--------ILDVYNLSS  201 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEECCCSS--CCCCEEEECTTSCEEEEECTTS--------CEEEEESSC
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCCC--CceEEEEECCCCCEEEEEcCCC--------EEEEEECCC
Confidence            456777777542      478889887765433222221  11223333 3567777777543        478899987


Q ss_pred             Cc
Q 016877          200 KK  201 (381)
Q Consensus       200 ~~  201 (381)
                      .+
T Consensus       202 ~~  203 (343)
T 3lrv_A          202 PD  203 (343)
T ss_dssp             TT
T ss_pred             CC
Confidence            65

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=91.56  E-value=3  Score=36.46  Aligned_cols=93  Identities=10%  Similarity=0.038  Sum_probs=47.4

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCe----EecCCCCCCCCccceEEEEE-eCCE-EEEEcCCCCCCCCCCcceEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNT----WGGRFDMPREMAHSHLGMVT-DGRY-IYVVTGQYGPQCRGPTAHTFV  194 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~----W~~~~~~~~~~~r~~~~~~~-~~~~-iyv~GG~~~~~~~~~~~~~~~  194 (381)
                      ++.+++.|+.+      ..+.+||..+..    -........    .-.+++. -+++ .++.|+.+        ..+..
T Consensus        22 ~~~~l~~~~~d------~~v~iw~~~~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~~l~~~~~d--------g~i~~   83 (342)
T 1yfq_A           22 SKSLLLITSWD------GSLTVYKFDIQAKNVDLLQSLRYKH----PLLCCNFIDNTDLQIYVGTVQ--------GEILK   83 (342)
T ss_dssp             GGTEEEEEETT------SEEEEEEEETTTTEEEEEEEEECSS----CEEEEEEEESSSEEEEEEETT--------SCEEE
T ss_pred             CCCEEEEEcCC------CeEEEEEeCCCCccccceeeeecCC----ceEEEEECCCCCcEEEEEcCC--------CeEEE
Confidence            44556666643      246777776654    332221111    1222333 3556 66666643        34888


Q ss_pred             EEC-CCCcEEeCCCCCCCCcccEEEEECCEEEEEccCC
Q 016877          195 LDT-ETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSG  231 (381)
Q Consensus       195 yd~-~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~  231 (381)
                      ||. .+.+-..+...+....-.+++...+.+++.++.+
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d  121 (342)
T 1yfq_A           84 VDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD  121 (342)
T ss_dssp             ECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETT
T ss_pred             EEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCC
Confidence            999 8877666554212222233444435566666644

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=91.55  E-value=1.7  Score=38.89  Aligned_cols=67  Identities=10%  Similarity=-0.058  Sum_probs=33.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC-CCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR-EMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~-~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      .+.-++.|+.+      ..+.++|+.+++-........ .-...-.+++. -+++.++.|+.++        .+..+|++
T Consensus        92 ~d~~l~~~s~d------g~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~--------~i~iwd~~  157 (344)
T 4gqb_B           92 GERGILVASDS------GAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDI--------CIKVWDLA  157 (344)
T ss_dssp             TTTEEEEEETT------SEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTS--------CEEEEETT
T ss_pred             CCCeEEEEECC------CEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCC--------eEEEEECC
Confidence            44445566554      247788887664222111000 00011123333 3566677776544        37788988


Q ss_pred             CCc
Q 016877          199 TKK  201 (381)
Q Consensus       199 ~~~  201 (381)
                      +.+
T Consensus       158 ~~~  160 (344)
T 4gqb_B          158 QQV  160 (344)
T ss_dssp             TTE
T ss_pred             CCc
Confidence            765

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=91.53  E-value=0.9  Score=42.08  Aligned_cols=103  Identities=12%  Similarity=0.061  Sum_probs=53.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ++.+++.|+.++      .+.++|..+..-..+-.+... ...-.+++..  ++.+++.|+.++        .+-++|.+
T Consensus       131 ~~~~lasGs~dg------~i~lWd~~~~~~~~~~~~~gH-~~~V~~l~f~p~~~~~l~s~s~D~--------~v~iwd~~  195 (435)
T 4e54_B          131 HPSTVAVGSKGG------DIMLWNFGIKDKPTFIKGIGA-GGSITGLKFNPLNTNQFYASSMEG--------TTRLQDFK  195 (435)
T ss_dssp             CTTCEEEEETTS------CEEEECSSCCSCCEEECCCSS-SCCCCEEEECSSCTTEEEEECSSS--------CEEEEETT
T ss_pred             CCCEEEEEeCCC------EEEEEECCCCCceeEEEccCC-CCCEEEEEEeCCCCCEEEEEeCCC--------EEEEeecc
Confidence            456788887653      477888876654332222111 1111234442  455666776554        36778988


Q ss_pred             CCcEEeCCCCC-CCCcccEEEE-ECCEEEEEccCCCCCCCCCccceE
Q 016877          199 TKKWQDLPPLP-VPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       199 ~~~W~~~~~~p-~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      ++.-..+.... ......++.. -++++++.|+.++     .+..|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg-----~i~~wd  237 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVG-----NVILLN  237 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSS-----BEEEEE
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCC-----cEeeec
Confidence            77655443221 1112223333 3566777776543     345555

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.47  E-value=0.94  Score=40.14  Aligned_cols=92  Identities=9%  Similarity=-0.051  Sum_probs=46.9

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEec-CCCCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      +.+++.|+.++      .+.+||+.+.+-.. +.....    .-.++...  ++.+++.|+.++        .+..||..
T Consensus        85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~~~~~----~i~~~~~~~~~~~~l~s~~~dg--------~i~iwd~~  146 (366)
T 3k26_A           85 HPLLAVAGSRG------IIRIINPITMQCIKHYVGHGN----AINELKFHPRDPNLLLSVSKDH--------ALRLWNIQ  146 (366)
T ss_dssp             CEEEEEEETTC------EEEEECTTTCCEEEEEESCCS----CEEEEEECSSCTTEEEEEETTS--------CEEEEETT
T ss_pred             CCEEEEecCCC------EEEEEEchhceEeeeecCCCC----cEEEEEECCCCCCEEEEEeCCC--------eEEEEEee
Confidence            46777887642      47888887664322 111111    12233333  556777776543        47889988


Q ss_pred             CCcEEeCC-CCC-CCCcccEEEEE-CCEEEEEccCC
Q 016877          199 TKKWQDLP-PLP-VPRYAPATQLW-RGRLHVMGGSG  231 (381)
Q Consensus       199 ~~~W~~~~-~~p-~~r~~~~~~~~-~~~lyv~GG~~  231 (381)
                      +.+-...- .+. ....-.+++.. ++..++.|+.+
T Consensus       147 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  182 (366)
T 3k26_A          147 TDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMD  182 (366)
T ss_dssp             TTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETT
T ss_pred             cCeEEEEecccccccCceeEEEECCCCCEEEEecCC
Confidence            76543321 111 12222222222 45566666654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=90.79  E-value=6.7  Score=35.02  Aligned_cols=109  Identities=12%  Similarity=0.049  Sum_probs=44.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC-CCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP-REMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ++++++.|+.+........++.|+..+..=....... ......-.+++.. +++++ .++.++        .+..||+.
T Consensus        53 DG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l-~~s~dg--------~v~lWd~~  123 (357)
T 4g56_B           53 DGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGIL-VASDSG--------AVELWEIL  123 (357)
T ss_dssp             SSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTEEE-EEETTS--------CEEEC---
T ss_pred             CCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEE-EEECCC--------EEEEeecc
Confidence            6788888876543333345778877654321110000 0000111233333 45544 454332        37778877


Q ss_pred             CCcEEeCCCCC---CCCcccEEEE-ECCEEEEEccCCCCCCCCCccceE
Q 016877          199 TKKWQDLPPLP---VPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       199 ~~~W~~~~~~p---~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      +.+-..+....   ....-.+++. -+++.++.|+.++     .+..|+
T Consensus       124 ~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg-----~v~iwd  167 (357)
T 4g56_B          124 EKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDF-----SVKVWD  167 (357)
T ss_dssp             -----CCCCEEECCCSSCEEEEEECSSSSEEEEEETTS-----CEEEEE
T ss_pred             ccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCC-----eEEEEE
Confidence            65432222111   1111122222 2566777777544     355565

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=90.71  E-value=8.2  Score=34.04  Aligned_cols=21  Identities=19%  Similarity=0.218  Sum_probs=14.2

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYH   58 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~   58 (381)
                      ++.+.+.|+.++     .+..||..+
T Consensus        38 d~~~l~sgs~D~-----~v~iWd~~~   58 (343)
T 2xzm_R           38 DSPVLISGSRDK-----TVMIWKLYE   58 (343)
T ss_dssp             CCCEEEEEETTS-----CEEEEEECS
T ss_pred             CCCEEEEEcCCC-----EEEEEECCc
Confidence            566778887665     566777654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=90.59  E-value=9.2  Score=34.26  Aligned_cols=65  Identities=6%  Similarity=-0.125  Sum_probs=34.4

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.++      .+.+||.....-..+.....    .-.+++.. ++..++.++.+        ..+..||..+
T Consensus       119 ~~~~l~~~~~dg------~i~i~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d--------~~i~iwd~~~  180 (425)
T 1r5m_A          119 DGNSIVTGVENG------ELRLWNKTGALLNVLNFHRA----PIVSVKWNKDGTHIISMDVE--------NVTILWNVIS  180 (425)
T ss_dssp             TSSEEEEEETTS------CEEEEETTSCEEEEECCCCS----CEEEEEECTTSSEEEEEETT--------CCEEEEETTT
T ss_pred             CCCEEEEEeCCC------eEEEEeCCCCeeeeccCCCc----cEEEEEECCCCCEEEEEecC--------CeEEEEECCC
Confidence            456777776542      47778855444444432222    12233332 44555565543        3377888877


Q ss_pred             CcEE
Q 016877          200 KKWQ  203 (381)
Q Consensus       200 ~~W~  203 (381)
                      .+-.
T Consensus       181 ~~~~  184 (425)
T 1r5m_A          181 GTVM  184 (425)
T ss_dssp             TEEE
T ss_pred             CcEE
Confidence            6543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.35  E-value=8.1  Score=33.25  Aligned_cols=53  Identities=13%  Similarity=0.245  Sum_probs=28.4

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEEC----CEEEEEecCCCCCCcccceEEEeCCCC
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIK----NLLYVFAGYGSIDYVHSHVDIYNFTDN  148 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~----~~iyv~GG~~~~~~~~~~~~~yd~~~~  148 (381)
                      ..+..+|..+.+|..+..+........++.+.    +.+++.|+.+      ..+.+||+.+.
T Consensus        77 ~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d------~~v~~wd~~~~  133 (297)
T 2pm7_B           77 GKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSD------GKVSVVEFKEN  133 (297)
T ss_dssp             TEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEEBCSS
T ss_pred             CEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECC------CcEEEEEecCC
Confidence            45677777776665544332222222233332    4567777654      24677777654

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=90.30  E-value=7.7  Score=32.96  Aligned_cols=95  Identities=9%  Similarity=-0.007  Sum_probs=48.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC--CCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      ++.+||....+      ..+.+||+....-..+.....  ........++.  .++.+|+.+...       ...+.+||
T Consensus        40 ~g~l~v~~~~~------~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~-------~~~i~~~d  106 (286)
T 1q7f_A           40 QNDIIVADTNN------HRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSP-------THQIQIYN  106 (286)
T ss_dssp             TCCEEEEEGGG------TEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGG-------GCEEEEEC
T ss_pred             CCCEEEEECCC------CEEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCC-------CCEEEEEC
Confidence            45788876432      358889988554443322110  00122344555  368899886310       24588999


Q ss_pred             CCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEcc
Q 016877          197 TETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGG  229 (381)
Q Consensus       197 ~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG  229 (381)
                      +....-..+.... ...-..+++ -++++|+...
T Consensus       107 ~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~  139 (286)
T 1q7f_A          107 QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVEC  139 (286)
T ss_dssp             TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEET
T ss_pred             CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEEC
Confidence            6655443332211 111123333 3567888754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=89.95  E-value=4.7  Score=34.75  Aligned_cols=98  Identities=9%  Similarity=0.092  Sum_probs=51.4

Q ss_pred             CCEEEEEecCCC-CCCcccceEEEeCCCCeEecCCCCCC--CCccceEEEEE-eC-CEEEEEcCCCCCCCCCCcceEEEE
Q 016877          121 KNLLYVFAGYGS-IDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLGMVT-DG-RYIYVVTGQYGPQCRGPTAHTFVL  195 (381)
Q Consensus       121 ~~~iyv~GG~~~-~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~y  195 (381)
                      ++.+|+...... .......+.+||+.++++..+.. +.  .......+++. .+ +++|+...         .+.+++|
T Consensus        28 ~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~g~l~v~~~---------~~~l~~~   97 (314)
T 1pjx_A           28 NGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK-PEVNGYGGIPAGCQCDRDANQLFVADM---------RLGLLVV   97 (314)
T ss_dssp             TSCEEEEETTCEETTEECCEEEEECTTTCCEEEEEC-CEETTEECCEEEEEECSSSSEEEEEET---------TTEEEEE
T ss_pred             CCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEe-cccCCCCCCCceEEEecCCCcEEEEEC---------CCCEEEE
Confidence            567888721000 00112358899998888876532 10  00112234444 34 78998753         1358999


Q ss_pred             ECCCCcEEeC-CCCCC--C-CcccEEEE-ECCEEEEEcc
Q 016877          196 DTETKKWQDL-PPLPV--P-RYAPATQL-WRGRLHVMGG  229 (381)
Q Consensus       196 d~~~~~W~~~-~~~p~--~-r~~~~~~~-~~~~lyv~GG  229 (381)
                      |++ .+...+ .....  + ..-..++. -++++|+...
T Consensus        98 d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~  135 (314)
T 1pjx_A           98 QTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP  135 (314)
T ss_dssp             ETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC
T ss_pred             eCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec
Confidence            998 777666 32211  1 11223333 3567887753

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=89.85  E-value=16  Score=36.01  Aligned_cols=98  Identities=18%  Similarity=0.284  Sum_probs=58.8

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCC------ccceEEEEEeCCEEEEEcCCCCCCCCC
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREM------AHSHLGMVTDGRYIYVVTGQYGPQCRG  187 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~------~r~~~~~~~~~~~iyv~GG~~~~~~~~  187 (381)
                      +-++.++.||+....       ..++++|..+.+  |+.-...+...      .....+.++.+++||+...        
T Consensus        72 ~P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~--------  136 (677)
T 1kb0_A           72 TPVVVDGIMYVSASW-------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW--------  136 (677)
T ss_dssp             CCEEETTEEEEECGG-------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--------
T ss_pred             CCEEECCEEEEECCC-------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--------
Confidence            335679999998652       458999998774  88754332100      0112345668899988632        


Q ss_pred             CcceEEEEECCCCc--EEeCCC-C-CC-CCcccEEEEECCEEEEEcc
Q 016877          188 PTAHTFVLDTETKK--WQDLPP-L-PV-PRYAPATQLWRGRLHVMGG  229 (381)
Q Consensus       188 ~~~~~~~yd~~~~~--W~~~~~-~-p~-~r~~~~~~~~~~~lyv~GG  229 (381)
                       ...++.+|.++.+  |+.-.. - +. .....+-++.++++|+..+
T Consensus       137 -dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~  182 (677)
T 1kb0_A          137 -DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNG  182 (677)
T ss_dssp             -TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCB
T ss_pred             -CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEec
Confidence             2468999998664  876432 1 11 1122234467888887654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=89.60  E-value=7.6  Score=34.65  Aligned_cols=94  Identities=10%  Similarity=0.032  Sum_probs=50.5

Q ss_pred             EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeC--CEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          123 LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDG--RYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       123 ~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      .+++.|+.+      ..+.+||..+.+.......... ...-.+++...  +.+++.|+.+        ..+..+|..+.
T Consensus        87 ~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~s~~~d--------~~i~iwd~~~~  151 (383)
T 3ei3_B           87 TTVAVGSKG------GDIILWDYDVQNKTSFIQGMGP-GDAITGMKFNQFNTNQLFVSSIR--------GATTLRDFSGS  151 (383)
T ss_dssp             TEEEEEEBT------SCEEEEETTSTTCEEEECCCST-TCBEEEEEEETTEEEEEEEEETT--------TEEEEEETTSC
T ss_pred             CEEEEEcCC------CeEEEEeCCCcccceeeecCCc-CCceeEEEeCCCCCCEEEEEeCC--------CEEEEEECCCC
Confidence            577777754      2488899987776654332111 12223444443  4666666543        35788999877


Q ss_pred             cEEeCCCCCC-CCcccEEEE-ECCEEEEEccCC
Q 016877          201 KWQDLPPLPV-PRYAPATQL-WRGRLHVMGGSG  231 (381)
Q Consensus       201 ~W~~~~~~p~-~r~~~~~~~-~~~~lyv~GG~~  231 (381)
                      ....+..... ...-.+++. -++++++.|+.+
T Consensus       152 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  184 (383)
T 3ei3_B          152 VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST  184 (383)
T ss_dssp             EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT
T ss_pred             ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC
Confidence            6655543221 111223333 255666676644

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=89.51  E-value=16  Score=35.98  Aligned_cols=62  Identities=5%  Similarity=-0.059  Sum_probs=33.0

Q ss_pred             ceEEEeCCC-CeEecCCCC-CCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeC
Q 016877          139 HVDIYNFTD-NTWGGRFDM-PREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL  205 (381)
Q Consensus       139 ~~~~yd~~~-~~W~~~~~~-~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~  205 (381)
                      .++++|+.+ .+-..+... .....-...+. -.+..|++...... .   ...+++.+|+.+.+...+
T Consensus       264 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~-~---~~~~i~~~d~~~g~~~~~  327 (741)
T 2ecf_A          264 KLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRD-Q---KKLDLVEVTLASNQQRVL  327 (741)
T ss_dssp             EEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETT-S---SEEEEEEEETTTCCEEEE
T ss_pred             EEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEeccc-C---CeEEEEEEECCCCceEEE
Confidence            688899887 664444321 11100112223 34445555432121 1   257899999998876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=89.45  E-value=4.6  Score=42.84  Aligned_cols=100  Identities=6%  Similarity=-0.075  Sum_probs=51.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +++.++.|+.+      ..+.+||..+++.........    .-.+++...+..++.|+.+        ..+..||..+.
T Consensus      1014 dg~~l~s~~~d------g~i~vwd~~~~~~~~~~~~~~----~v~~~~~~~~~~l~~~~~d--------g~v~vwd~~~~ 1075 (1249)
T 3sfz_A         1014 DGKTLISSSED------SVIQVWNWQTGDYVFLQAHQE----TVKDFRLLQDSRLLSWSFD--------GTVKVWNVITG 1075 (1249)
T ss_dssp             SSSCEEEECSS------SBEEEEETTTTEEECCBCCSS----CEEEEEECSSSEEEEEESS--------SEEEEEETTTT
T ss_pred             CCCEEEEEcCC------CEEEEEECCCCceEEEecCCC----cEEEEEEcCCCcEEEEECC--------CcEEEEECCCC
Confidence            55667777654      358889999888776543332    1223444444345555533        35788888776


Q ss_pred             cEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceE
Q 016877          201 KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       201 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      +-...-..........+..-++++++.|+.++     .+..|+
T Consensus      1076 ~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~-----~v~iwd 1113 (1249)
T 3sfz_A         1076 RIERDFTCHQGTVLSCAISSDATKFSSTSADK-----TAKIWS 1113 (1249)
T ss_dssp             CCCEEEECCSSCCCCEEECSSSSSCEEECCSS-----CCCEEC
T ss_pred             ceeEEEcccCCcEEEEEECCCCCEEEEEcCCC-----cEEEEE
Confidence            42111111111112222233566667766543     355555

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=89.26  E-value=9.1  Score=37.80  Aligned_cols=181  Identities=9%  Similarity=0.056  Sum_probs=82.1

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCC-------CcccceEEEeCCCCeEe--cCCCCCCCCc
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID-------YVHSHVDIYNFTDNTWG--GRFDMPREMA  161 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-------~~~~~~~~yd~~~~~W~--~~~~~~~~~~  161 (381)
                      .++.+|..+.+......++.......+..-+++.++++..+...       .....++++++.+..-+  .+...+.. .
T Consensus       148 ~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~-~  226 (695)
T 2bkl_A          148 VLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGD-P  226 (695)
T ss_dssp             EEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCC-T
T ss_pred             EEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCC-C
Confidence            57788888776531111221111222223355555565554321       12245899998876532  22222211 1


Q ss_pred             cceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCcc
Q 016877          162 HSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVD  240 (381)
Q Consensus       162 r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~  240 (381)
                      ....+... -+++..++...+..    ..++++.+|..+..|+.+..-....  ...+..++.+|+......       .
T Consensus       227 ~~~~~~~~SpDG~~l~~~~~~~~----~~~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~g~l~~~s~~~~-------~  293 (695)
T 2bkl_A          227 TTFLQSDLSRDGKYLFVYILRGW----SENDVYWKRPGEKDFRLLVKGVGAK--YEVHAWKDRFYVLTDEGA-------P  293 (695)
T ss_dssp             TCEEEEEECTTSCCEEEEEEETT----TEEEEEEECTTCSSCEEEEECSSCC--EEEEEETTEEEEEECTTC-------T
T ss_pred             EEEEEEEECCCCCEEEEEEeCCC----CceEEEEEcCCCCceEEeecCCCce--EEEEecCCcEEEEECCCC-------C
Confidence            12222322 34443444332221    1467888888777787765322222  222235666665543211       1


Q ss_pred             ceEeeeecCCc-cCCceEEecCCCCCCcceeEEEeCCEEEEEccCC
Q 016877          241 HWSLAVKDGKP-LEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQE  285 (381)
Q Consensus       241 ~~~~~~~~~~~-~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~  285 (381)
                      .+.+.+.+.+. ....|+.+.+......-..+...+++|++....+
T Consensus       294 ~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~lv~~~~~d  339 (695)
T 2bkl_A          294 RQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIVGGHLSLEYLKD  339 (695)
T ss_dssp             TCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEETTEEEEEEEET
T ss_pred             CCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEECCEEEEEEEEC
Confidence            12222222211 1224877654321211123344588888876544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=89.21  E-value=16  Score=36.16  Aligned_cols=174  Identities=11%  Similarity=0.028  Sum_probs=80.7

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECC-EEEEEecCCCC------CCcccceEEEeCCCCeEe--cCCCCCC-CC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKN-LLYVFAGYGSI------DYVHSHVDIYNFTDNTWG--GRFDMPR-EM  160 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~-~iyv~GG~~~~------~~~~~~~~~yd~~~~~W~--~~~~~~~-~~  160 (381)
                      .++.+|..+.+.... .++..+....+.. ++ .||...-....      ......++++++.+..=+  .+...+. . 
T Consensus       156 ~i~v~dl~tg~~~~~-~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~-  232 (693)
T 3iuj_A          156 EIHLMDVESKQPLET-PLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQ-  232 (693)
T ss_dssp             EEEEEETTTCSEEEE-EEEEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGG-
T ss_pred             EEEEEECCCCCCCcc-ccCCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCC-
Confidence            577788888776543 1222222233344 65 45544332210      011245888887765421  1111111 0 


Q ss_pred             ccceEEE-EEeCCE-EEEEcCCCCCCCCCCcceEEEEECCCC--cEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCC
Q 016877          161 AHSHLGM-VTDGRY-IYVVTGQYGPQCRGPTAHTFVLDTETK--KWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYT  236 (381)
Q Consensus       161 ~r~~~~~-~~~~~~-iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~  236 (381)
                      .....+. ..-+++ |++......     ..++++.+|..+.  .|+.+.+-...... .....++++|+....+.    
T Consensus       233 ~~~~~~~~~SpDg~~l~~~~~~~~-----~~~~i~~~d~~~~~~~~~~l~~~~~~~~~-~~~~~g~~l~~~t~~~~----  302 (693)
T 3iuj_A          233 HHRYVGATVTEDDRFLLISAANST-----SGNRLYVKDLSQENAPLLTVQGDLDADVS-LVDNKGSTLYLLTNRDA----  302 (693)
T ss_dssp             CCSEEEEEECTTSCEEEEEEESSS-----SCCEEEEEETTSTTCCCEEEECSSSSCEE-EEEEETTEEEEEECTTC----
T ss_pred             CeEEEEEEEcCCCCEEEEEEccCC-----CCcEEEEEECCCCCCceEEEeCCCCceEE-EEeccCCEEEEEECCCC----
Confidence            0112222 233444 444322111     1368999998765  67766533222221 23456788998865432    


Q ss_pred             CCccceEeeeecCC-ccCCceEEecCCCCCCcceeEEEeCCEEEEEc
Q 016877          237 PEVDHWSLAVKDGK-PLEKEWRTEIPIPRGGPHRACVVVDDRLLVIG  282 (381)
Q Consensus       237 ~~~~~~~~~~~~~~-~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~G  282 (381)
                         ..+.+.+.+.+ +....|+.+.+-.....  .....++.|++..
T Consensus       303 ---~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~  344 (693)
T 3iuj_A          303 ---PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEY  344 (693)
T ss_dssp             ---TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEE
T ss_pred             ---CCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEE
Confidence               11222222222 22346887655443332  4455566766654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=89.20  E-value=4.1  Score=35.70  Aligned_cols=53  Identities=8%  Similarity=0.064  Sum_probs=26.3

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE-C---CEEEEEecCCCCCCcccceEEEeCCCCe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-K---NLLYVFAGYGSIDYVHSHVDIYNFTDNT  149 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~---~~iyv~GG~~~~~~~~~~~~~yd~~~~~  149 (381)
                      .+..+|..+.+............-.++... +   +.+++.|+.+      ..+.+||..+.+
T Consensus        45 ~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~  101 (357)
T 3i2n_A           45 VIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFG------GNLHIWNLEAPE  101 (357)
T ss_dssp             EEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETT------SCEEEECTTSCS
T ss_pred             EEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCC------CeEEEEeCCCCC
Confidence            566667666654433222111111122222 2   3667777654      247788887664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=89.15  E-value=17  Score=35.30  Aligned_cols=64  Identities=11%  Similarity=0.093  Sum_probs=34.8

Q ss_pred             ceEEEeCCCCe--EecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCc--EEeC
Q 016877          139 HVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK--WQDL  205 (381)
Q Consensus       139 ~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~--W~~~  205 (381)
                      .+.++|.++.+  |+.-..-+........+-++.++.+|+-.+....   .....++.||.++.+  |+.-
T Consensus       132 ~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~---g~~g~v~A~D~~TG~~~W~~~  199 (599)
T 1w6s_A          132 NVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAEL---GVRGYLTAYDVKTGEQVWRAY  199 (599)
T ss_dssp             EEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGG---TCCCEEEEEETTTCCEEEEEE
T ss_pred             EEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEeccccc---CCCCeEEEEECCCCcEEEEEc
Confidence            58899988774  8863211110001122334568888764321111   113568999998755  8654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=88.95  E-value=1.6  Score=39.26  Aligned_cols=70  Identities=13%  Similarity=0.097  Sum_probs=36.6

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCC----------CCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD----------MPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGP  188 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~----------~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~  188 (381)
                      ++.+++.|+.++      .+.+||..+.+......          .+......-.+++..  ++.+++.|+.+       
T Consensus        55 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d-------  121 (408)
T 4a11_B           55 EGRYMLSGGSDG------VIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFD-------  121 (408)
T ss_dssp             TCCEEEEEETTS------CEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETT-------
T ss_pred             CCCEEEEEcCCC------eEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCC-------
Confidence            457777777642      47788887664332211          000001112233333  44566666543       


Q ss_pred             cceEEEEECCCCcEEe
Q 016877          189 TAHTFVLDTETKKWQD  204 (381)
Q Consensus       189 ~~~~~~yd~~~~~W~~  204 (381)
                       ..+..||..+.+-..
T Consensus       122 -~~i~iwd~~~~~~~~  136 (408)
T 4a11_B          122 -KTLKVWDTNTLQTAD  136 (408)
T ss_dssp             -SEEEEEETTTTEEEE
T ss_pred             -CeEEEeeCCCCccce
Confidence             357888988776443

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=88.86  E-value=10  Score=32.19  Aligned_cols=119  Identities=8%  Similarity=0.024  Sum_probs=60.2

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCc-eEEE-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDG-AAIQ-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~-~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|+. .+...... +...... +++. -++.+|+.....      ..+.+||+. .+.+... ++.. .....++
T Consensus        36 ~~v~~~d~~-~~~~~~~~-~~~~~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~-g~~~~~~-~~~~-~~~~~~i  104 (299)
T 2z2n_A           36 NMISCINLD-GKITEYPL-PTPDAKVMCLTISSDGEVWFTENAA------NKIGRITKK-GIIKEYT-LPNP-DSAPYGI  104 (299)
T ss_dssp             TEEEEECTT-CCEEEEEC-SSTTCCEEEEEECTTSCEEEEETTT------TEEEEECTT-SCEEEEE-CSST-TCCEEEE
T ss_pred             CcEEEEcCC-CCeEEecC-CcccCceeeEEECCCCCEEEeCCCC------CeEEEECCC-CcEEEEe-CCCc-CCCceee
Confidence            357788887 66655431 2111222 2222 256788875321      248888886 4454432 2211 1223445


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEc
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMG  228 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~G  228 (381)
                      +.. ++.+|+....        ...++++|+ +.+............-..++.. ++++|+..
T Consensus       105 ~~~~~g~l~v~~~~--------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~  158 (299)
T 2z2n_A          105 TEGPNGDIWFTEMN--------GNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTE  158 (299)
T ss_dssp             EECTTSCEEEEETT--------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCEEEEecC--------CceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEe
Confidence            544 5788887431        245889998 5555443211111222233333 56788764

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=88.53  E-value=11  Score=36.19  Aligned_cols=92  Identities=11%  Similarity=0.067  Sum_probs=46.2

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeC--CCCeEecCCCCCCCCccceE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNF--TDNTWGGRFDMPREMAHSHL  165 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~~~r~~~  165 (381)
                      ..+..+|..+.+-...  ++....-|.++.. ++ ++|+.+. +      +.+.+||+  .+.+-..  .++..  ....
T Consensus       159 ~~V~v~D~~t~~~~~~--i~~g~~~~~v~~spdg~~l~v~~~-d------~~V~v~D~~~~t~~~~~--~i~~g--~~p~  225 (543)
T 1nir_A          159 GQIALVDGDSKKIVKV--IDTGYAVHISRMSASGRYLLVIGR-D------ARIDMIDLWAKEPTKVA--EIKIG--IEAR  225 (543)
T ss_dssp             TEEEEEETTTCCEEEE--EECSTTEEEEEECTTSCEEEEEET-T------SEEEEEETTSSSCEEEE--EEECC--SEEE
T ss_pred             CeEEEEECCCceEEEE--EecCcccceEEECCCCCEEEEECC-C------CeEEEEECcCCCCcEEE--EEecC--CCcc
Confidence            4577788877654322  2211123344333 44 6666653 2      45889999  5554322  22221  1223


Q ss_pred             EEEEe-----CC-EEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          166 GMVTD-----GR-YIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       166 ~~~~~-----~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      .++..     ++ .+|+.. +.       .+.+..+|..+.+-
T Consensus       226 ~va~sp~~~~dg~~l~v~~-~~-------~~~v~v~D~~t~~~  260 (543)
T 1nir_A          226 SVESSKFKGYEDRYTIAGA-YW-------PPQFAIMDGETLEP  260 (543)
T ss_dssp             EEEECCSTTCTTTEEEEEE-EE-------SSEEEEEETTTCCE
T ss_pred             eEEeCCCcCCCCCEEEEEE-cc-------CCeEEEEecccccc
Confidence            34443     34 566543 21       25577889887653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=88.47  E-value=20  Score=35.31  Aligned_cols=180  Identities=13%  Similarity=0.079  Sum_probs=80.8

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCC----------CcccceEEEeCCCCeEe--cCCCCC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSID----------YVHSHVDIYNFTDNTWG--GRFDMP  157 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~----------~~~~~~~~yd~~~~~W~--~~~~~~  157 (381)
                      .++.+|..+.+...... +... ....+.. +++.++++..+...          .....++++++.+.+-+  .+...+
T Consensus       152 ~i~v~d~~tg~~~~~~~-~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~  229 (710)
T 2xdw_A          152 TIKFMKVDGAKELPDVL-ERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFP  229 (710)
T ss_dssp             EEEEEETTTTEEEEEEE-EEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCT
T ss_pred             EEEEEECCCCCCCcccc-cCcc-cceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccC
Confidence            57788888777654321 1111 1222222 55444444333220          11235888898877632  121111


Q ss_pred             CCCccceEEEE-EeCC-EEEEEcCCCCCCCCCCcceEEEEECCC------C--cEEeCCCCCCCCcccEEEEECCEEEEE
Q 016877          158 REMAHSHLGMV-TDGR-YIYVVTGQYGPQCRGPTAHTFVLDTET------K--KWQDLPPLPVPRYAPATQLWRGRLHVM  227 (381)
Q Consensus       158 ~~~~r~~~~~~-~~~~-~iyv~GG~~~~~~~~~~~~~~~yd~~~------~--~W~~~~~~p~~r~~~~~~~~~~~lyv~  227 (381)
                      .. ........ .-++ .|++... .+..   ..++++.+|..+      .  .++.+........ .....-++.||+.
T Consensus       230 ~~-~~~~~~~~~SpDg~~l~~~~~-~~~~---~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~-~~~s~dg~~l~~~  303 (710)
T 2xdw_A          230 DE-PKWMGGAELSDDGRYVLLSIR-EGCD---PVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY-DYVTNEGTVFTFK  303 (710)
T ss_dssp             TC-TTCEEEEEECTTSCEEEEEEE-CSSS---SCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE-EEEEEETTEEEEE
T ss_pred             CC-CeEEEEEEEcCCCCEEEEEEE-ccCC---CccEEEEEECcccccccCCccceEEeeCCCCcEE-EEEeccCCEEEEE
Confidence            10 11222232 2344 4444432 2211   146899999876      3  5666653222221 2233456788888


Q ss_pred             ccCCCCCCCCCccceEeeeecCCcc-CCceEEecCCCCCCcceeEEEe-CCEEEEEccCC
Q 016877          228 GGSGENRYTPEVDHWSLAVKDGKPL-EKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQE  285 (381)
Q Consensus       228 GG~~~~~~~~~~~~~~~~~~~~~~~-~~~W~~~~~~p~~~~~~~~~~~-~~~l~v~GG~~  285 (381)
                      +.....       .+.+.+.+.+.. ...|+.+.+......-..+... ++++++....+
T Consensus       304 s~~~~~-------~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~  356 (710)
T 2xdw_A          304 TNRHSP-------NYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHD  356 (710)
T ss_dssp             ECTTCT-------TCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEET
T ss_pred             ECCCCC-------CCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEEC
Confidence            653221       122222222211 1258876543221111233445 67777766543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=88.44  E-value=19  Score=34.78  Aligned_cols=99  Identities=15%  Similarity=0.228  Sum_probs=57.8

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeC-CCC--eEecCCCCCCCCc------cceEEEEEeCCEEEEEcCCCCCCCC
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNF-TDN--TWGGRFDMPREMA------HSHLGMVTDGRYIYVVTGQYGPQCR  186 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~~~------r~~~~~~~~~~~iyv~GG~~~~~~~  186 (381)
                      +-++.++.||+....      ...++++|. ++.  .|+.-...+....      ....+.++.+++||+...       
T Consensus        57 ~P~v~~g~vyv~~~~------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------  123 (571)
T 2ad6_A           57 APLVIGDMMYVHSAF------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA-------  123 (571)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-------
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-------
Confidence            345679999998652      135899998 665  4987433221000      012245678999998642       


Q ss_pred             CCcceEEEEECCCC--cEEeC-CCCCCC-CcccEEEEECCEEEEEcc
Q 016877          187 GPTAHTFVLDTETK--KWQDL-PPLPVP-RYAPATQLWRGRLHVMGG  229 (381)
Q Consensus       187 ~~~~~~~~yd~~~~--~W~~~-~~~p~~-r~~~~~~~~~~~lyv~GG  229 (381)
                        ...++.+|.++.  .|+.- ...+.. ....+-++.++++|+-..
T Consensus       124 --dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~  168 (571)
T 2ad6_A          124 --NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCS  168 (571)
T ss_dssp             --TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECB
T ss_pred             --CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEec
Confidence              246899999876  48753 221111 112233457888887653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=88.07  E-value=16  Score=33.57  Aligned_cols=63  Identities=14%  Similarity=0.180  Sum_probs=35.4

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEec--CCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG--RFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~--~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +.+++.|+.+      ..+.+||+.+.+...  +.....    .-.+++..++.+++.|+.+        ..+..||..+
T Consensus       210 ~~~l~s~~~d------~~i~vwd~~~~~~~~~~~~~h~~----~v~~~~~sd~~~l~s~~~d--------~~v~vwd~~~  271 (450)
T 2vdu_B          210 HQFIITSDRD------EHIKISHYPQCFIVDKWLFGHKH----FVSSICCGKDYLLLSAGGD--------DKIFAWDWKT  271 (450)
T ss_dssp             CEEEEEEETT------SCEEEEEESCTTCEEEECCCCSS----CEEEEEECSTTEEEEEESS--------SEEEEEETTT
T ss_pred             CcEEEEEcCC------CcEEEEECCCCceeeeeecCCCC----ceEEEEECCCCEEEEEeCC--------CeEEEEECCC
Confidence            7788888764      347788887664332  111111    1122222256666676633        3588889887


Q ss_pred             CcE
Q 016877          200 KKW  202 (381)
Q Consensus       200 ~~W  202 (381)
                      .+-
T Consensus       272 ~~~  274 (450)
T 2vdu_B          272 GKN  274 (450)
T ss_dssp             CCE
T ss_pred             CcE
Confidence            653

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=87.96  E-value=15  Score=33.21  Aligned_cols=61  Identities=16%  Similarity=0.191  Sum_probs=35.6

Q ss_pred             eEEEeCCC--CeEecCCCCCCCCccceEEEEEe---CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCC
Q 016877          140 VDIYNFTD--NTWGGRFDMPREMAHSHLGMVTD---GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPP  207 (381)
Q Consensus       140 ~~~yd~~~--~~W~~~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~  207 (381)
                      +++++...  .+|+.+.+...  ...-++++..   ++.||+.+.. +.    .-.-+++.+-...+|+.+..
T Consensus        33 l~~~~~~~~g~~W~~~~~~~~--~~~v~~i~~dp~~~~~l~~g~~~-g~----~g~gl~~s~D~G~tW~~~~~   98 (394)
T 3b7f_A           33 AWFLASDPARRTWELRGPVFL--GHTIHHIVQDPREPERMLMAART-GH----LGPTVFRSDDGGGNWTEATR   98 (394)
T ss_dssp             EEEEEECTTSCSEEEEEEEST--TSEEEEEEECSSSTTCEEEEEEC-------CCEEEEEESSTTSCCEECSB
T ss_pred             eEEEECCCCCCCceECCccCC--CCceEEEEECCCCCCeEEEEecC-CC----CCccEEEeCCCCCCceECCc
Confidence            66677654  68997642111  1223445554   5678876532 11    01257888878889999863

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.18  E-value=6.8  Score=34.95  Aligned_cols=127  Identities=14%  Similarity=0.061  Sum_probs=63.1

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEE--CCE-EEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNL-LYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      .++.+|..+.+...+..  ...........  ++. |++... .........++.+|+.+.+++.+.. ..+ .......
T Consensus       169 ~l~~~d~~~g~~~~~~~--~~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~-~~~-~~~~~~~  243 (396)
T 3c5m_A          169 RLIKVDIETGELEVIHQ--DTAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE-HAE-GESCTHE  243 (396)
T ss_dssp             EEEEEETTTCCEEEEEE--ESSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC-CCT-TEEEEEE
T ss_pred             eEEEEECCCCcEEeecc--CCcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec-cCC-Cccccce
Confidence            57778887777665542  11211222222  243 444432 2221122469999998888777654 211 1112222


Q ss_pred             EE-eCCE-EEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEcc
Q 016877          168 VT-DGRY-IYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGG  229 (381)
Q Consensus       168 ~~-~~~~-iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG  229 (381)
                      +. -+++ |+... .....   ....++++|+.+.+.+.+...+.  .. ....- +++++++.+
T Consensus       244 ~~spdg~~l~~~~-~~~~~---~~~~l~~~d~~~g~~~~l~~~~~--~~-~~~s~~dg~~l~~~~  301 (396)
T 3c5m_A          244 FWIPDGSAMAYVS-YFKGQ---TDRVIYKANPETLENEEVMVMPP--CS-HLMSNFDGSLMVGDG  301 (396)
T ss_dssp             EECTTSSCEEEEE-EETTT---CCEEEEEECTTTCCEEEEEECCS--EE-EEEECSSSSEEEEEE
T ss_pred             EECCCCCEEEEEe-cCCCC---ccceEEEEECCCCCeEEeeeCCC--CC-CCccCCCCceEEEec
Confidence            33 2444 44442 22111   12459999999887766654442  11 22233 677666654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=87.12  E-value=14  Score=32.04  Aligned_cols=129  Identities=9%  Similarity=0.003  Sum_probs=57.6

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+.+-..  .+........++.+  ++.+++.|+.+.      .+.++|.....-..+.....    .-..+
T Consensus        87 ~~v~~wd~~~~~~~~--~~~~h~~~v~~~~~~~~~~~l~s~s~D~------~i~vwd~~~~~~~~~~~h~~----~v~~~  154 (319)
T 3frx_A           87 KTLRLWDVATGETYQ--RFVGHKSDVMSVDIDKKASMIISGSRDK------TIKVWTIKGQCLATLLGHND----WVSQV  154 (319)
T ss_dssp             SEEEEEETTTTEEEE--EEECCSSCEEEEEECTTSCEEEEEETTS------CEEEEETTSCEEEEECCCSS----CEEEE
T ss_pred             CEEEEEECCCCCeeE--EEccCCCcEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCeEEEEeccCC----cEEEE
Confidence            356677776654211  11111111222222  456777777653      46677876554333322111    11122


Q ss_pred             EEe-------CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCc
Q 016877          168 VTD-------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEV  239 (381)
Q Consensus       168 ~~~-------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~  239 (381)
                      ...       ++.+++.|+.++        .+..+|..+.+-...-. .....-.+++. -++++++.|+.++     .+
T Consensus       155 ~~~~~~~~~~~~~~l~s~~~d~--------~i~~wd~~~~~~~~~~~-~h~~~v~~~~~sp~g~~l~s~~~dg-----~i  220 (319)
T 3frx_A          155 RVVPNEKADDDSVTIISAGNDK--------MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDG-----EI  220 (319)
T ss_dssp             EECCC------CCEEEEEETTS--------CEEEEETTTTEEEEEEC-CCCSCEEEEEECTTSSEEEEEETTC-----EE
T ss_pred             EEccCCCCCCCccEEEEEeCCC--------EEEEEECCcchhheeec-CCCCcEEEEEEcCCCCEEEEEeCCC-----eE
Confidence            222       223555665433        37778887654322100 01111112222 2566777777543     45


Q ss_pred             cceEe
Q 016877          240 DHWSL  244 (381)
Q Consensus       240 ~~~~~  244 (381)
                      ..|++
T Consensus       221 ~iwd~  225 (319)
T 3frx_A          221 MLWNL  225 (319)
T ss_dssp             EEEET
T ss_pred             EEEEC
Confidence            55653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=87.02  E-value=12  Score=32.58  Aligned_cols=95  Identities=11%  Similarity=0.089  Sum_probs=52.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++||+.+..+      ..+++||+.+++...+...+.   ..-.+++. -++++|+....+..    ....+++||+++
T Consensus        55 ~g~l~~~~~~~------~~i~~~d~~~~~~~~~~~~~~---~~~~~i~~~~dg~l~v~~~~~~~----~~~~i~~~d~~~  121 (333)
T 2dg1_A           55 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHK---ANPAAIKIHKDGRLFVCYLGDFK----STGGIFAATENG  121 (333)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEECSS---SSEEEEEECTTSCEEEEECTTSS----SCCEEEEECTTS
T ss_pred             CCCEEEEECCC------CEEEEEeCCCCcEEEEeeCCC---CCcceEEECCCCcEEEEeCCCCC----CCceEEEEeCCC
Confidence            56788876532      358999999888776432111   12234444 36678887532211    125699999998


Q ss_pred             CcEEe-CCCCCCCCcccEEEE-ECCEEEEEc
Q 016877          200 KKWQD-LPPLPVPRYAPATQL-WRGRLHVMG  228 (381)
Q Consensus       200 ~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~G  228 (381)
                      ..-+. +........-..++. -++++|+..
T Consensus       122 ~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~  152 (333)
T 2dg1_A          122 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTD  152 (333)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEE
T ss_pred             CEEEEEEccCccCCcccceEECCCCCEEEEe
Confidence            77552 222211111222222 256788764

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=86.88  E-value=17  Score=32.56  Aligned_cols=49  Identities=16%  Similarity=0.299  Sum_probs=25.1

Q ss_pred             eEEEEECCCCcEEeCC--CCCCCCcc--cEEEE--ECCEEEEEccCCCCCCCCCccceEe
Q 016877          191 HTFVLDTETKKWQDLP--PLPVPRYA--PATQL--WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       191 ~~~~yd~~~~~W~~~~--~~p~~r~~--~~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      .+..||..+.+-...-  ..+.....  .++..  .++.+++.|+.++     .+..|++
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~-----~v~~wd~  235 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT-----TVRLWDL  235 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTS-----CEEEEET
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCC-----eEEEEEC
Confidence            3778888876543321  22222111  12222  2567888887654     4566654

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=86.74  E-value=24  Score=34.25  Aligned_cols=98  Identities=11%  Similarity=0.163  Sum_probs=55.4

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeC-CCC--eEecCCCCCCCC---c---cceEEEEE--eCCE----EEEEcCC
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNF-TDN--TWGGRFDMPREM---A---HSHLGMVT--DGRY----IYVVTGQ  180 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~-~~~--~W~~~~~~~~~~---~---r~~~~~~~--~~~~----iyv~GG~  180 (381)
                      +-++.++.||+....      ...++++|. ++.  .|+.-...+...   .   ....+.++  .+++    ||+... 
T Consensus        57 tP~v~~g~vyv~~~~------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~-  129 (599)
T 1w6s_A           57 APLVVDGKMYIHTSF------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL-  129 (599)
T ss_dssp             CCEEETTEEEEECST------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT-
T ss_pred             ccEEECCEEEEEeCC------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC-
Confidence            345679999998752      135899998 666  498754332100   0   01123455  6777    887532 


Q ss_pred             CCCCCCCCcceEEEEECCCCc--EEeCCCCCCC--CcccEEEEECCEEEEEc
Q 016877          181 YGPQCRGPTAHTFVLDTETKK--WQDLPPLPVP--RYAPATQLWRGRLHVMG  228 (381)
Q Consensus       181 ~~~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~--r~~~~~~~~~~~lyv~G  228 (381)
                              ...++.+|.++.+  |+.-..-+..  ....+-++.++++|+-.
T Consensus       130 --------dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~  173 (599)
T 1w6s_A          130 --------DGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGS  173 (599)
T ss_dssp             --------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECC
T ss_pred             --------CCEEEEEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEe
Confidence                    2458899988765  8753211100  11223345788887654

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=86.69  E-value=14  Score=32.07  Aligned_cols=151  Identities=9%  Similarity=-0.028  Sum_probs=69.9

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--ee-cccccccccCcceEeecCCCCCeEEcc
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TK-KDVVPKRILPATFQDLPAPELKWEKMK  106 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~  106 (381)
                      .++.+|+.++.++     .+..||+.+++  ..++........++...  +. .+...  .....+..+|..+.+-...-
T Consensus         9 ~~~~~~v~~~~~~-----~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~--~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            9 AGHEYMIVTNYPN-----NLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLN--NHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             TTCEEEEEEETTT-----EEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEE--TTTTEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEeCCCC-----eEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEe--CCCCcEEEEeCCCCcEEEEE
Confidence            3678888886443     78999999887  33332110011222211  11 11111  12346888888776543322


Q ss_pred             CCCC-----CCCCceEEEE-CC-EEEEEecC--CCCCCc---ccceEEEeCCCCeEec-CCCCCCCCccceEEEEE-eCC
Q 016877          107 AAPV-----PRLDGAAIQI-KN-LLYVFAGY--GSIDYV---HSHVDIYNFTDNTWGG-RFDMPREMAHSHLGMVT-DGR  172 (381)
Q Consensus       107 ~~p~-----~r~~~~~~~~-~~-~iyv~GG~--~~~~~~---~~~~~~yd~~~~~W~~-~~~~~~~~~r~~~~~~~-~~~  172 (381)
                      ..+.     ...-..++.. ++ .+|+....  .....+   ...+.+||+.+++-.. +...+.+  +...+++. -++
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg  159 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDG  159 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTS
T ss_pred             EcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC--CcccceeECCCC
Confidence            2221     1111223332 44 56655421  000000   1468899988743221 1111111  11122323 355


Q ss_pred             EEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          173 YIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       173 ~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      ++|+.++           +++++|+.+.+-
T Consensus       160 ~l~~~~~-----------~i~~~d~~~~~~  178 (349)
T 1jmx_B          160 SLYVAGP-----------DIYKMDVKTGKY  178 (349)
T ss_dssp             CEEEESS-----------SEEEECTTTCCE
T ss_pred             cEEEccC-----------cEEEEeCCCCce
Confidence            6777432           278888877654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=86.58  E-value=13  Score=36.70  Aligned_cols=68  Identities=7%  Similarity=0.034  Sum_probs=38.2

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCC---eEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDN---TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~---~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      +++.++++..       ..++++|..++   .-..+.....   ........-+++..+++.         ...++.+|.
T Consensus       119 Dg~~l~~~~~-------~~i~~~d~~~~~~~~~~~l~~~~~---~~~~~~~SPDG~~la~~~---------~~~i~~~d~  179 (741)
T 2ecf_A          119 DAQRLLFPLG-------GELYLYDLKQEGKAAVRQLTHGEG---FATDAKLSPKGGFVSFIR---------GRNLWVIDL  179 (741)
T ss_dssp             TSSEEEEEET-------TEEEEEESSSCSTTSCCBCCCSSS---CEEEEEECTTSSEEEEEE---------TTEEEEEET
T ss_pred             CCCEEEEEeC-------CcEEEEECCCCCcceEEEcccCCc---ccccccCCCCCCEEEEEe---------CCcEEEEec
Confidence            5555555543       46999999887   5554433222   111222223455444442         136999999


Q ss_pred             CCCcEEeCCC
Q 016877          198 ETKKWQDLPP  207 (381)
Q Consensus       198 ~~~~W~~~~~  207 (381)
                      .+.+...+..
T Consensus       180 ~~g~~~~~~~  189 (741)
T 2ecf_A          180 ASGRQMQLTA  189 (741)
T ss_dssp             TTTEEEECCC
T ss_pred             CCCCEEEecc
Confidence            9888776643

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=86.23  E-value=14  Score=35.06  Aligned_cols=91  Identities=9%  Similarity=-0.005  Sum_probs=42.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++.++.|+.+      ..+.+||.....-..+.....    .-.+++. -+++.++.++.+        ..+..||...
T Consensus       396 dg~~l~~~~~d------~~v~~~~~~~~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~d--------~~v~~w~~~~  457 (577)
T 2ymu_A          396 DGQTIASASDD------KTVKLWNRNGQLLQTLTGHSS----SVWGVAFSPDDQTIASASDD--------KTVKLWNRNG  457 (577)
T ss_dssp             TSSCEEEEETT------SEEEEECTTCCEEEEEECCSS----CEEEEEECTTSSEEEEEETT--------SEEEEEETTS
T ss_pred             CCCEEEEEeCC------CEEEEEeCCCCEEEEecCCCC----CeEEEEECCCCCEEEEEcCC--------CEEEEEECCC
Confidence            45666777654      246778865443333322221    1122333 345566666533        3467778655


Q ss_pred             CcEEeCCCCCCCCcccEEEE-ECCEEEEEccCC
Q 016877          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMGGSG  231 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~~  231 (381)
                      ..-..+....  ..-.+++. -++++++.++.+
T Consensus       458 ~~~~~~~~~~--~~v~~~~~spd~~~las~~~d  488 (577)
T 2ymu_A          458 QLLQTLTGHS--SSVRGVAFSPDGQTIASASDD  488 (577)
T ss_dssp             CEEEEEECCS--SCEEEEEECTTSCEEEEEETT
T ss_pred             CEEEEEcCCC--CCEEEEEEcCCCCEEEEEeCC
Confidence            4433332211  11122222 256677776643

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.20  E-value=5.5  Score=36.04  Aligned_cols=99  Identities=8%  Similarity=0.025  Sum_probs=51.1

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++.++.|+.+      ..+.++|..+.+-...-.-..   ..-.+++.. ++..++.|+.+        ..+..+|..+
T Consensus       134 dg~~l~s~~~d------~~i~iwd~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~d--------~~v~iwd~~~  196 (393)
T 1erj_A          134 DGKFLATGAED------RLIRIWDIENRKIVMILQGHE---QDIYSLDYFPSGDKLVSGSGD--------RTVRIWDLRT  196 (393)
T ss_dssp             TSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETT--------SEEEEEETTT
T ss_pred             CCCEEEEEcCC------CeEEEEECCCCcEEEEEccCC---CCEEEEEEcCCCCEEEEecCC--------CcEEEEECCC
Confidence            55677777764      247888988776443211111   112233332 44455566543        3477889887


Q ss_pred             CcEEeCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCccceE
Q 016877          200 KKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWS  243 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~  243 (381)
                      .+....-...  ....+++..  ++++++.|+.++     .+..|+
T Consensus       197 ~~~~~~~~~~--~~v~~~~~~~~~~~~l~~~s~d~-----~v~iwd  235 (393)
T 1erj_A          197 GQCSLTLSIE--DGVTTVAVSPGDGKYIAAGSLDR-----AVRVWD  235 (393)
T ss_dssp             TEEEEEEECS--SCEEEEEECSTTCCEEEEEETTS-----CEEEEE
T ss_pred             CeeEEEEEcC--CCcEEEEEECCCCCEEEEEcCCC-----cEEEEE
Confidence            7643321111  111222332  567777777543     355555

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=86.13  E-value=13  Score=33.10  Aligned_cols=182  Identities=11%  Similarity=0.033  Sum_probs=81.3

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEee-ecccccccccCcceEeecCCCCCeEEccCCC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKT-KKDVVPKRILPATFQDLPAPELKWEKMKAAP  109 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p  109 (381)
                      ++...+.|+.++     .+..||..+++  ..+.... ..-..+.... +............+..+|..+.+-...-...
T Consensus       138 dg~~l~sgs~d~-----~i~iwd~~~~~~~~~~~~h~-~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~  211 (344)
T 4gqb_B          138 SGTQAVSGSKDI-----CIKVWDLAQQVVLSSYRAHA-AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS  211 (344)
T ss_dssp             TSSEEEEEETTS-----CEEEEETTTTEEEEEECCCS-SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCcEEEEEcCcC-CceEEEEecCCCCCceeeeccccccccccccccceeeeeecc
Confidence            566677776555     67889998887  3333211 1111111100 0000000112235667777765532211111


Q ss_pred             CCCCCceEEEE---CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-C-CEEEEEcCCCCCC
Q 016877          110 VPRLDGAAIQI---KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G-RYIYVVTGQYGPQ  184 (381)
Q Consensus       110 ~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~  184 (381)
                      .......++.+   ++++++.|+.++      .+.+||..+.+-  +..+... ...-.+++.. + .++++.|+.++  
T Consensus       212 ~~~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~--~~~~~~h-~~~v~~v~fsp~g~~~lasgs~D~--  280 (344)
T 4gqb_B          212 APGYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSC--VLSSAVH-SQCVTGLVFSPHSVPFLASLSEDC--  280 (344)
T ss_dssp             --CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--C--CEEEECC-SSCEEEEEECSSSSCCEEEEETTS--
T ss_pred             eeeccceeeeecCCCCcceEEeccCC------cEEEEECCCCcE--EEEEcCC-CCCEEEEEEccCCCeEEEEEeCCC--
Confidence            11111222222   456888887642      477889876532  1112111 1112233333 2 35566666543  


Q ss_pred             CCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE--CCEEEEEccCCCCCCCCCccceEe
Q 016877          185 CRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW--RGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                            .+.+||..+.+-....  .....-.+++..  +..+++.||.++     .+..|++
T Consensus       281 ------~i~vwd~~~~~~~~~~--~H~~~V~~v~~sp~~~~llas~s~D~-----~v~~w~v  329 (344)
T 4gqb_B          281 ------SLAVLDSSLSELFRSQ--AHRDFVRDATWSPLNHSLLTTVGWDH-----QVVHHVV  329 (344)
T ss_dssp             ------CEEEECTTCCEEEEEC--CCSSCEEEEEECSSSTTEEEEEETTS-----CEEEEEC
T ss_pred             ------eEEEEECCCCcEEEEc--CCCCCEEEEEEeCCCCeEEEEEcCCC-----eEEEEEC
Confidence                  3778888876543321  111122233322  345777777543     4566664

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=86.06  E-value=21  Score=32.79  Aligned_cols=63  Identities=13%  Similarity=0.171  Sum_probs=31.6

Q ss_pred             eeEe-C-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEE
Q 016877          310 VYML-D-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVL  377 (381)
Q Consensus       310 v~~y-d-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  377 (381)
                      +|.. + ....++.+..++.. .. -.+++...+.+++..+.........   ..-++|.++.++++|+.
T Consensus       334 iw~~~~~~~~~l~~~~~~~~~-~~-v~~~~~~~~~~~v~~~~~~~~~~~~---~~i~v~~~~~~~~~~~~  398 (450)
T 2vdu_B          334 ILEMSEKQKGDLALKQIITFP-YN-VISLSAHNDEFQVTLDNKESSGVQK---NFAKFIEYNLNENSFVV  398 (450)
T ss_dssp             EEEECSSSTTCEEEEEEEECS-SC-EEEEEEETTEEEEEECCTTCCSSCC---CSEEEEEEETTTTEEEE
T ss_pred             EEEeccCCCCceeeccEeccC-Cc-eEEEEecCCcEEEEEecccCCCCCC---cceEEEEEEcCCCeEEE
Confidence            4555 2 33455555444333 22 2344556677777765432110000   11257888888888853

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=85.87  E-value=10  Score=33.03  Aligned_cols=149  Identities=7%  Similarity=-0.097  Sum_probs=71.8

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCCCceeEEe--eecccccccc--cCcceEeecCCCCCeEEc-c
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQKGENIGVK--TKKDVVPKRI--LPATFQDLPAPELKWEKM-K  106 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~W~~l-~  106 (381)
                      ++.||+.+..+     ..+..||+.+++ ..+.........+++..  +..+......  ....+..+|+.+.....+ .
T Consensus        55 ~g~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~  129 (333)
T 2dg1_A           55 QGQLFLLDVFE-----GNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIE  129 (333)
T ss_dssp             TSCEEEEETTT-----CEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEEC
T ss_pred             CCCEEEEECCC-----CEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEc
Confidence            56788876533     367889998877 33321111111222211  1111111100  113688888887765432 2


Q ss_pred             CCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-C-CEEEEEcCCCC
Q 016877          107 AAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-G-RYIYVVTGQYG  182 (381)
Q Consensus       107 ~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~  182 (381)
                      ..... .....+.+  ++++|+.............++++|+.+.+...+..-.    ....+++.. + +.+|+....  
T Consensus       130 ~~~~~-~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~i~~~~dg~~l~v~~~~--  202 (333)
T 2dg1_A          130 DLSTA-YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI----SVANGIALSTDEKVLWVTETT--  202 (333)
T ss_dssp             SSSSC-CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE----SSEEEEEECTTSSEEEEEEGG--
T ss_pred             cCccC-CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC----CcccceEECCCCCEEEEEeCC--
Confidence            21111 12222222  5678876533211112346899998877665542110    112234433 3 358876421  


Q ss_pred             CCCCCCcceEEEEECCC
Q 016877          183 PQCRGPTAHTFVLDTET  199 (381)
Q Consensus       183 ~~~~~~~~~~~~yd~~~  199 (381)
                            ...+++||+.+
T Consensus       203 ------~~~i~~~d~~~  213 (333)
T 2dg1_A          203 ------ANRLHRIALED  213 (333)
T ss_dssp             ------GTEEEEEEECT
T ss_pred             ------CCeEEEEEecC
Confidence                  35688898864

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=85.62  E-value=14  Score=32.74  Aligned_cols=62  Identities=6%  Similarity=0.016  Sum_probs=35.9

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR  158 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~  158 (381)
                      .++.+|..+.+-.++...+..........-+++.+++...+      ..++++|+.+.+-..+...+.
T Consensus        61 ~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~------~~l~~~d~~~g~~~~~~~~~~  122 (388)
T 3pe7_A           61 NYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG------RNLMRVDLATLEENVVYQVPA  122 (388)
T ss_dssp             EEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEECCT
T ss_pred             eEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC------CeEEEEECCCCcceeeeechh
Confidence            57788888877777665443322222333455434444322      358999999887665544443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=85.38  E-value=30  Score=34.03  Aligned_cols=237  Identities=11%  Similarity=0.006  Sum_probs=106.8

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCC----ceE--EEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccce
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLD----GAA--IQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSH  164 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~----~~~--~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~  164 (381)
                      .+++.+.....|+.+.+.+.--..    ...  .+-+++.+++.-...... ...++++|+.+++......++.  ... 
T Consensus        95 ~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~-~~~i~v~dl~tg~~~~~~~~~~--~~~-  170 (695)
T 2bkl_A           95 ILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAAD-EAVLHVIDVDSGEWSKVDVIEG--GKY-  170 (695)
T ss_dssp             EEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCS-CCEEEEEETTTCCBCSSCCBSC--CTT-
T ss_pred             EEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCc-eEEEEEEECCCCCCcCCcccCc--ccc-
Confidence            456666666677776543321111    111  222555555443221111 2369999999988652112221  111 


Q ss_pred             EEEEE-eCCEEEEEcCCCCCCC-----CCCcceEEEEECCCCcE--EeCCCCCC-CCcccEEEE-ECCEEEEEccCCCCC
Q 016877          165 LGMVT-DGRYIYVVTGQYGPQC-----RGPTAHTFVLDTETKKW--QDLPPLPV-PRYAPATQL-WRGRLHVMGGSGENR  234 (381)
Q Consensus       165 ~~~~~-~~~~iyv~GG~~~~~~-----~~~~~~~~~yd~~~~~W--~~~~~~p~-~r~~~~~~~-~~~~lyv~GG~~~~~  234 (381)
                      ...+. -+++.++++..+....     .....++++++..+..-  ..+-..+. +........ -+++.+++...... 
T Consensus       171 ~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~-  249 (695)
T 2bkl_A          171 ATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGW-  249 (695)
T ss_dssp             CCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETT-
T ss_pred             cceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCC-
Confidence            22333 3555555554433200     01245689999887652  22222221 122222222 24554444332210 


Q ss_pred             CCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC
Q 016877          235 YTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD  314 (381)
Q Consensus       235 ~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  314 (381)
                        ...+.|.+     +..+.+|+.+.+-.....  ..+..++.+|+.......                   ...++.+|
T Consensus       250 --~~~~l~~~-----~~~~~~~~~l~~~~~~~~--~~~~~~g~l~~~s~~~~~-------------------~~~l~~~d  301 (695)
T 2bkl_A          250 --SENDVYWK-----RPGEKDFRLLVKGVGAKY--EVHAWKDRFYVLTDEGAP-------------------RQRVFEVD  301 (695)
T ss_dssp             --TEEEEEEE-----CTTCSSCEEEEECSSCCE--EEEEETTEEEEEECTTCT-------------------TCEEEEEB
T ss_pred             --CceEEEEE-----cCCCCceEEeecCCCceE--EEEecCCcEEEEECCCCC-------------------CCEEEEEe
Confidence              12233332     344556776654322221  223356665555432211                   23478877


Q ss_pred             -CCCC---eEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCC
Q 016877          315 -DEMK---WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNT  372 (381)
Q Consensus       315 -~~~~---W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~  372 (381)
                       .+..   |+.+.+-. +.... ..+...+++|++....+...          .++.++++.
T Consensus       302 ~~~~~~~~~~~l~~~~-~~~~l-~~~~~~~~~lv~~~~~dg~~----------~l~~~~~~g  351 (695)
T 2bkl_A          302 PAKPARASWKEIVPED-SSASL-LSVSIVGGHLSLEYLKDATS----------EVRVATLKG  351 (695)
T ss_dssp             TTBCSGGGCEEEECCC-SSCEE-EEEEEETTEEEEEEEETTEE----------EEEEEETTC
T ss_pred             CCCCCccCCeEEecCC-CCCeE-EEEEEECCEEEEEEEECCEE----------EEEEEeCCC
Confidence             4433   87764321 11111 22344588888877654332          467777644

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=84.66  E-value=18  Score=30.84  Aligned_cols=11  Identities=18%  Similarity=0.271  Sum_probs=9.6

Q ss_pred             eeeeeeCCCce
Q 016877           50 IASNWSPYHNS   60 (381)
Q Consensus        50 ~~~~~d~~~~~   60 (381)
                      ++..||..+++
T Consensus        46 tV~iWd~~tg~   56 (318)
T 4ggc_A           46 SVYLWSASSGD   56 (318)
T ss_dssp             EEEEEETTTCC
T ss_pred             EEEEEECCCCC
Confidence            68899999887

>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*

Probab=84.45  E-value=18  Score=33.81  Aligned_cols=48  Identities=19%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeC--CCCCCCCcccEEEEECCEEEEEccCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDL--PPLPVPRYAPATQLWRGRLHVMGGSG  231 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~--~~~p~~r~~~~~~~~~~~lyv~GG~~  231 (381)
                      ++++|+|-|          +..|+||..+.+...-  +.+|  . .-++....+++|+|-|..
T Consensus       158 ~~~~yfFkG----------~~yw~yd~~~~~~~~~~w~gi~--~-iDAA~~~~g~~YfFkG~~  207 (460)
T 1qhu_A          158 DEGILFFQG----------NRKWFWDLTTGTKKERSWPAVG--N-CTSALRWLGRYYCFQGNQ  207 (460)
T ss_dssp             SSEEEEEET----------TEEEEEETTTTEEEEECCTTSC--C-CSEEEEETTEEEEEETTE
T ss_pred             CCeEEEEec----------ccEEEEecccceeecccCCCCC--c-cchheeeCCceEEEECCE
Confidence            678899976          5689999988765432  1222  2 345556689999998853

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=84.27  E-value=18  Score=30.63  Aligned_cols=21  Identities=14%  Similarity=0.249  Sum_probs=12.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTD  147 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~  147 (381)
                      ++.+++.|+.++      .+..+|...
T Consensus        70 ~~~~l~~~~~dg------~i~~~~~~~   90 (313)
T 3odt_A           70 EKELLLFGGKDT------MINGVPLFA   90 (313)
T ss_dssp             TTTEEEEEETTS------CEEEEETTC
T ss_pred             CCCEEEEecCCC------eEEEEEeee
Confidence            556777777543      355566543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=84.13  E-value=24  Score=31.94  Aligned_cols=94  Identities=10%  Similarity=0.081  Sum_probs=53.3

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      ...++.+|..+.+..++-.+......-.++.+  ++..++.|+.++      .+.++|..+.+-.....-..    ....
T Consensus       124 d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~~h~----~~v~  193 (420)
T 4gga_A          124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMTSHS----ARVG  193 (420)
T ss_dssp             TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCCS----SCEE
T ss_pred             CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEeCCC----CceE
Confidence            45788889888877665544443333333333  557777887653      47889988776433211111    1122


Q ss_pred             EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      +...++.+.+.|+.++        .+..+|....
T Consensus       194 ~~s~~~~~l~sgs~d~--------~i~~~d~~~~  219 (420)
T 4gga_A          194 SLSWNSYILSSGSRSG--------HIHHHDVRVA  219 (420)
T ss_dssp             EEEEETTEEEEEETTS--------EEEEEETTSS
T ss_pred             EEeeCCCEEEEEeCCC--------ceeEeeeccc
Confidence            3344556666766433        4566776554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=84.10  E-value=18  Score=35.56  Aligned_cols=78  Identities=13%  Similarity=0.097  Sum_probs=45.0

Q ss_pred             EEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEE
Q 016877          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV  194 (381)
Q Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  194 (381)
                      .++.+++||+...       ...+.++|.++.+  |+.-..-+........+-++.++.+|+-.+....   .....++.
T Consensus       113 ~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~---~~~g~v~a  182 (668)
T 1kv9_A          113 VALWGDKVYVGTL-------DGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEY---GVRGFVSA  182 (668)
T ss_dssp             CEEEBTEEEEECT-------TSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEEE
T ss_pred             eEEECCEEEEEcC-------CCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCc---CCCCEEEE
Confidence            3456888887542       1358999998774  8864321111112223345578888874321111   12457999


Q ss_pred             EECCCCc--EEe
Q 016877          195 LDTETKK--WQD  204 (381)
Q Consensus       195 yd~~~~~--W~~  204 (381)
                      ||+++.+  |+.
T Consensus       183 ~D~~tG~~~W~~  194 (668)
T 1kv9_A          183 YDADTGKLAWRF  194 (668)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCcEEEEe
Confidence            9998765  865

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=83.76  E-value=17  Score=31.41  Aligned_cols=69  Identities=10%  Similarity=0.014  Sum_probs=32.9

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCCCeEe---cCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTDNTWG---GRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      +.+++.||.++      .+.++|+.+.+-.   ....+... ...-.+++. .++++.+.|+.++        .+..++.
T Consensus        51 ~~~l~S~s~D~------~i~vWd~~~~~~~~~~~~~~l~~h-~~~V~~~~~s~dg~~l~s~~~d~--------~i~~~~~  115 (340)
T 4aow_A           51 PDMILSASRDK------TIIMWKLTRDETNYGIPQRALRGH-SHFVSDVVISSDGQFALSGSWDG--------TLRLWDL  115 (340)
T ss_dssp             TTEEEEEETTS------CEEEEEECCSSSCSEEEEEEECCC-SSCEEEEEECTTSSEEEEEETTS--------EEEEEET
T ss_pred             CCEEEEEcCCC------eEEEEECCCCCcccceeeEEEeCC-CCCEEEEEECCCCCEEEEEcccc--------cceEEee
Confidence            46788888653      3556666543321   11111110 011122222 3456666666443        3667777


Q ss_pred             CCCcEEeC
Q 016877          198 ETKKWQDL  205 (381)
Q Consensus       198 ~~~~W~~~  205 (381)
                      ........
T Consensus       116 ~~~~~~~~  123 (340)
T 4aow_A          116 TTGTTTRR  123 (340)
T ss_dssp             TTTEEEEE
T ss_pred             cccceeee
Confidence            76654443

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=83.70  E-value=38  Score=33.89  Aligned_cols=147  Identities=8%  Similarity=0.010  Sum_probs=74.7

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce-eeecCCCCCC--CceeEEe--eecccccccccCcceEeecCCCCCeEEccC
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS-IILPNNGPQK--GENIGVK--TKKDVVPKRILPATFQDLPAPELKWEKMKA  107 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~~~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~W~~l~~  107 (381)
                      ++.||+...       +-+.+||+.+++ ..++...+..  -..+...  +.+....   ...-+++|++.+++++....
T Consensus       141 ~g~lwi~t~-------~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt---~~~Gl~~~~~~~~~~~~~~~  210 (795)
T 4a2l_A          141 PEQLLISTP-------EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIYIGT---STDGLYTYSITQKTFEKVIP  210 (795)
T ss_dssp             TTEEEEEET-------TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEEEEE---SSSCEEEEETTTCCEEECC-
T ss_pred             CCCEEEEEC-------CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEEEEE---CCCCEEEEeCCCCeEEEecC
Confidence            677887542       246788988777 4433211000  1111111  1122211   11257889998888877643


Q ss_pred             CCCCCCCceEE-EECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCC---CCCc-cceEEEEEe-CCEEEEEcCCC
Q 016877          108 APVPRLDGAAI-QIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMP---REMA-HSHLGMVTD-GRYIYVVTGQY  181 (381)
Q Consensus       108 ~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~---~~~~-r~~~~~~~~-~~~iyv~GG~~  181 (381)
                      .+....-.++. .-++.|+|..-.       +-+++||+.+++++.....+   .... ..-.++... ++.|+|-..  
T Consensus       211 ~~~~~~i~~i~~d~~g~lwigt~~-------~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~--  281 (795)
T 4a2l_A          211 ILGTKQIQAILQQSPTRIWVATEG-------AGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF--  281 (795)
T ss_dssp             ---CCCEEEEEEEETTEEEEEEBS-------SCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES--
T ss_pred             CCCCCeeEEEEEcCCCCEEEEECC-------CCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC--
Confidence            22111111222 235677764311       23889999998887654321   1111 112233333 567776421  


Q ss_pred             CCCCCCCcceEEEEECCCCcEEeCC
Q 016877          182 GPQCRGPTAHTFVLDTETKKWQDLP  206 (381)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~~W~~~~  206 (381)
                              .-+.+||+.+.+++...
T Consensus       282 --------~Gl~~~~~~~~~~~~~~  298 (795)
T 4a2l_A          282 --------NDLNIYHEGTDSFASYS  298 (795)
T ss_dssp             --------SCEEEEETTTTEEEEEC
T ss_pred             --------ChhheEcCCCCeEEEEe
Confidence                    13789999999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=83.66  E-value=20  Score=30.65  Aligned_cols=169  Identities=9%  Similarity=-0.087  Sum_probs=80.1

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--eecccccccccCcceEeecCCCC-CeEEccCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TKKDVVPKRILPATFQDLPAPEL-KWEKMKAA  108 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~W~~l~~~  108 (381)
                      +.+++.|..++     .+..+|+++++  ..++.......+.+...  +.+.. .   ....+..+|+... .|+--.  
T Consensus         5 ~~~lv~~~~~~-----~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv-s---~~~~V~~~d~~G~~~W~~~~--   73 (276)
T 3no2_A            5 QHLLVGGSGWN-----KIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF-S---YSKGAKMITRDGRELWNIAA--   73 (276)
T ss_dssp             CEEEEECTTCS-----EEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE-E---CBSEEEEECTTSCEEEEEEC--
T ss_pred             CcEEEeeCCCC-----EEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE-e---CCCCEEEECCCCCEEEEEcC--
Confidence            55666665443     67899998888  55555321122223222  11222 1   2346888898332 465432  


Q ss_pred             CCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCe-EecC--CCCCCCCccceEEEEEeCCEEEEEcCCCCCC
Q 016877          109 PVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNT-WGGR--FDMPREMAHSHLGMVTDGRYIYVVTGQYGPQ  184 (381)
Q Consensus       109 p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~-W~~~--~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~  184 (381)
                      +.....+++..+ ++.+++....+     ...++.+|+..+. |+.-  ...+.+...........++.+++....    
T Consensus        74 ~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~----  144 (276)
T 3no2_A           74 PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFA----  144 (276)
T ss_dssp             CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETT----
T ss_pred             CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEeccCCCCcccccccCceECCCCCEEEEecC----
Confidence            111112333333 56666654321     1357788875442 4431  111111111112233445555554321    


Q ss_pred             CCCCcceEEEEECCC-CcEEeCCCCCCCCcccEEEE-ECCEEEEEccC
Q 016877          185 CRGPTAHTFVLDTET-KKWQDLPPLPVPRYAPATQL-WRGRLHVMGGS  230 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG~  230 (381)
                          ...+..||++- ..|+.-.+.    ..+++.. .++.+++.+..
T Consensus       145 ----~~~v~~~d~~G~~~w~~~~~~----~~~~~~~~~~g~~~v~~~~  184 (276)
T 3no2_A          145 ----TSEVREIAPNGQLLNSVKLSG----TPFSSAFLDNGDCLVACGD  184 (276)
T ss_dssp             ----TTEEEEECTTSCEEEEEECSS----CCCEEEECTTSCEEEECBT
T ss_pred             ----CCEEEEECCCCCEEEEEECCC----CccceeEcCCCCEEEEeCC
Confidence                35688999872 236553321    1123333 46778877653

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=83.28  E-value=34  Score=32.97  Aligned_cols=23  Identities=17%  Similarity=-0.006  Sum_probs=16.4

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++...+.|+.++     ++..||..+.+
T Consensus       250 dg~~l~s~s~D~-----~v~lWd~~~~~  272 (611)
T 1nr0_A          250 DGTKIASASADK-----TIKIWNVATLK  272 (611)
T ss_dssp             TSSEEEEEETTS-----EEEEEETTTTE
T ss_pred             CCCEEEEEeCCC-----eEEEEeCCCCc
Confidence            556667776554     67889988776

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=82.89  E-value=25  Score=31.12  Aligned_cols=59  Identities=5%  Similarity=-0.033  Sum_probs=31.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCC
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFD  155 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~  155 (381)
                      .++.+|..+.+..++...+..........-+++.+++...+      ..++++|+.+.+-+.+..
T Consensus        61 ~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~------~~l~~~d~~~~~~~~~~~  119 (396)
T 3c5m_A           61 NYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNE------LNLMKVDLETLEEQVIYT  119 (396)
T ss_dssp             EEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETT------TEEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcC------CcEEEEECCCCCcEEEEe
Confidence            56777877777666644222111112223345444344322      148899988776555543

>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1

Probab=82.85  E-value=8.8  Score=31.26  Aligned_cols=52  Identities=13%  Similarity=0.235  Sum_probs=30.0

Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC--cEEe--C----CCCCCCCcccEEEEE--CCEEEEEcc
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK--KWQD--L----PPLPVPRYAPATQLW--RGRLHVMGG  229 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~--~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG  229 (381)
                      +++..++++|+|=|          +.+|+++....  ....  +    +.+|..  --++...  ++++|+|-|
T Consensus        11 Ai~~~~g~~yfFkg----------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~~--IDAa~~~~~~~~~yfFkG   72 (195)
T 1itv_A           11 AIAEIGNQLYLFKD----------GKYWRFSEGRGSRPQGPFLIADKWPALPRK--LDSVFEEPLSKKLFFFSG   72 (195)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECCSSSCCCEEEEEHHHHCTTSCSS--CSEEEECTTTCCEEEEET
T ss_pred             EEEEeCCEEEEEEC----------CEEEEEECCccccCCCcEEhhhccCCCCCC--ccEEEEECCCCeEEEEeC
Confidence            35567999999955          45788877652  2211  1    234432  2233332  678998876

>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1

Probab=82.70  E-value=19  Score=29.61  Aligned_cols=53  Identities=11%  Similarity=0.115  Sum_probs=30.5

Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe--C----CCCCCCCcccEEEEE--CCEEEEEccC
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD--L----PPLPVPRYAPATQLW--RGRLHVMGGS  230 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~--~----~~~p~~r~~~~~~~~--~~~lyv~GG~  230 (381)
                      +++...+++|+|=|          ..+|+++.....+..  +    +.+|..  --++...  ++++|+|-|.
T Consensus        28 Ai~~~~g~~y~Fkg----------~~~wr~~~~~~~~~p~~I~~~wp~Lp~~--iDAa~~~~~~~~iyfFkG~   88 (207)
T 1pex_A           28 AITSLRGETMIFKD----------RFFWRLHPQQVDAELFLTKSFWPELPNR--IDAAYEHPSHDLIFIFRGR   88 (207)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECSSSSCCEEEEHHHHCTTSCSS--CCEEEEETTTTEEEEEETT
T ss_pred             EEEeCCCcEEEEEC----------CEEEEEeCCCcCCCceehhHhccCCCCC--ccEEEEeccCCcEEEEccC
Confidence            45567999999954          457788765533321  1    234422  2233333  5889998663

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=82.26  E-value=22  Score=30.00  Aligned_cols=118  Identities=10%  Similarity=0.122  Sum_probs=60.5

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+.++|+. .+..... ++..........+  ++.+|+.....      ..+.+||+. +++.... ++... .....+
T Consensus        41 ~~v~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~~g~l~v~~~~~------~~v~~~d~~-g~~~~~~-~~~~~-~~~~~i  109 (300)
T 2qc5_A           41 NKISSLDQS-GRIKEFE-VPTPDAKVMCLIVSSLGDIWFTENGA------NKIGKLSKK-GGFTEYP-LPQPD-SGPYGI  109 (300)
T ss_dssp             TEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSCEEEEETTT------TEEEEECTT-SCEEEEE-CSSTT-CCEEEE
T ss_pred             CeEEEECCC-CceEEEE-CCCCCCcceeEEECCCCCEEEEecCC------CeEEEECCC-CCeEEec-CCCCC-CCCccc
Confidence            467788887 6655432 2222122222222  46788865321      348899988 6665432 22111 223444


Q ss_pred             EEe-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCC-CCcccEEEE-ECCEEEEEc
Q 016877          168 VTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPV-PRYAPATQL-WRGRLHVMG  228 (381)
Q Consensus       168 ~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~-~~~~lyv~G  228 (381)
                      +.. ++.+|+....        ...+++||+. .+..... ++. ...-..++. -++++|+..
T Consensus       110 ~~~~~g~l~v~~~~--------~~~i~~~~~~-g~~~~~~-~~~~~~~~~~i~~d~~g~l~v~~  163 (300)
T 2qc5_A          110 TEGLNGDIWFTQLN--------GDRIGKLTAD-GTIYEYD-LPNKGSYPAFITLGSDNALWFTE  163 (300)
T ss_dssp             EECSTTCEEEEETT--------TTEEEEECTT-SCEEEEE-CSSTTCCEEEEEECTTSSEEEEE
T ss_pred             eECCCCCEEEEccC--------CCeEEEECCC-CCEEEcc-CCCCCCCceeEEECCCCCEEEEe
Confidence            443 6788887421        2468899988 5554332 221 112223333 246688764

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=82.04  E-value=24  Score=30.36  Aligned_cols=63  Identities=16%  Similarity=0.170  Sum_probs=31.2

Q ss_pred             CEEEEEecCCCCCCcccceEEEeCCC-CeEecCC--CCCCCCccceEEEEEe--CCEEEEEcCCCCCCCCCCcceEEEEE
Q 016877          122 NLLYVFAGYGSIDYVHSHVDIYNFTD-NTWGGRF--DMPREMAHSHLGMVTD--GRYIYVVTGQYGPQCRGPTAHTFVLD  196 (381)
Q Consensus       122 ~~iyv~GG~~~~~~~~~~~~~yd~~~-~~W~~~~--~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd  196 (381)
                      ..+|+.+..+      ..+.+||+.+ .+...+.  ....+.......++..  +..+|+.+..        ...+..||
T Consensus       141 ~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~--------~~~i~~~~  206 (343)
T 1ri6_A          141 RTLWVPALKQ------DRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL--------NSSVDVWE  206 (343)
T ss_dssp             SEEEEEEGGG------TEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT--------TTEEEEEE
T ss_pred             CEEEEecCCC------CEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCC--------CCEEEEEE
Confidence            3677765322      3588899887 6554322  1111101111223332  3457776532        24577888


Q ss_pred             CC
Q 016877          197 TE  198 (381)
Q Consensus       197 ~~  198 (381)
                      ..
T Consensus       207 ~~  208 (343)
T 1ri6_A          207 LK  208 (343)
T ss_dssp             SS
T ss_pred             ec
Confidence            74

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=82.03  E-value=33  Score=32.29  Aligned_cols=62  Identities=6%  Similarity=-0.031  Sum_probs=30.5

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++.++.|+.++      .+.+||.....-..+.....+    -.+++. .+++.++.|+.+        ..+..||...
T Consensus       355 ~g~~l~~~~~dg------~v~~~~~~~~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~d--------~~v~~~~~~~  416 (577)
T 2ymu_A          355 DGQTIASASDDK------TVKLWNRNGQLLQTLTGHSSS----VRGVAFSPDGQTIASASDD--------KTVKLWNRNG  416 (577)
T ss_dssp             TSSEEEEEETTS------EEEEEETTCCEEEEEECCSSC----EEEEEECTTSSCEEEEETT--------SEEEEECTTC
T ss_pred             CCCEEEEEeCCC------EEEEEcCCCCEEEEecCCCCC----eEEEEECCCCCEEEEEeCC--------CEEEEEeCCC
Confidence            456667776542      466777655444433222211    112222 345556666543        3466777544


Q ss_pred             C
Q 016877          200 K  200 (381)
Q Consensus       200 ~  200 (381)
                      .
T Consensus       417 ~  417 (577)
T 2ymu_A          417 Q  417 (577)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=81.98  E-value=38  Score=32.60  Aligned_cols=94  Identities=9%  Similarity=0.024  Sum_probs=47.8

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEE
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~  166 (381)
                      +..+..+|..+.+-..  .++....-|.++..  +.++|+.+ .+      ..+.+||+.+.+-+.+..++..  .....
T Consensus       176 ~~~V~viD~~t~~v~~--~i~~g~~p~~v~~SpDGr~lyv~~-~d------g~V~viD~~~~t~~~v~~i~~G--~~P~~  244 (567)
T 1qks_A          176 AGQIALIDGSTYEIKT--VLDTGYAVHISRLSASGRYLFVIG-RD------GKVNMIDLWMKEPTTVAEIKIG--SEARS  244 (567)
T ss_dssp             TTEEEEEETTTCCEEE--EEECSSCEEEEEECTTSCEEEEEE-TT------SEEEEEETTSSSCCEEEEEECC--SEEEE
T ss_pred             CCeEEEEECCCCeEEE--EEeCCCCccceEECCCCCEEEEEc-CC------CeEEEEECCCCCCcEeEEEecC--CCCce
Confidence            3467788888775432  22333232344333  34788764 21      3589999852222222233321  11223


Q ss_pred             EEEe------CCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877          167 MVTD------GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       167 ~~~~------~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      +++.      +..+|+..-        ..+.+.++|..+.+
T Consensus       245 ia~s~~~~pDGk~l~v~n~--------~~~~v~ViD~~t~~  277 (567)
T 1qks_A          245 IETSKMEGWEDKYAIAGAY--------WPPQYVIMDGETLE  277 (567)
T ss_dssp             EEECCSTTCTTTEEEEEEE--------ETTEEEEEETTTCC
T ss_pred             eEEccccCCCCCEEEEEEc--------cCCeEEEEECCCCc
Confidence            4443      446777632        13567788987754

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=81.27  E-value=40  Score=32.42  Aligned_cols=79  Identities=8%  Similarity=0.039  Sum_probs=44.5

Q ss_pred             EEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEE
Q 016877          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFV  194 (381)
Q Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~  194 (381)
                      .++.+++||+...       ...+.++|.++.  .|+.-..-+........+-++.++.+|+-.+.....   ....++.
T Consensus       111 ~~~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~---~~g~v~a  180 (571)
T 2ad6_A          111 LAYGAGQIVKKQA-------NGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELG---VRGAVNA  180 (571)
T ss_dssp             CEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGT---CCCEEEE
T ss_pred             cEEECCEEEEEeC-------CCEEEEEECCCCCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccC---CCCEEEE
Confidence            4556889988643       135899999877  487532111000011223345688888754321111   1356899


Q ss_pred             EECCCCc--EEeC
Q 016877          195 LDTETKK--WQDL  205 (381)
Q Consensus       195 yd~~~~~--W~~~  205 (381)
                      ||+++.+  |+.-
T Consensus       181 ~D~~tG~~~W~~~  193 (571)
T 2ad6_A          181 FDLKTGELKWRAF  193 (571)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCcEEEEEc
Confidence            9998654  8653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=81.11  E-value=44  Score=32.86  Aligned_cols=79  Identities=14%  Similarity=0.050  Sum_probs=45.6

Q ss_pred             EEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCC-CCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEE
Q 016877          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFD-MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF  193 (381)
Q Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~-~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  193 (381)
                      .++.+++||+...       ...+.++|.++.+  |+.-.. -+........+.++.++.+|+-.+....   .....++
T Consensus       124 ~a~~~~~v~v~~~-------dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~---~~~g~v~  193 (677)
T 1kb0_A          124 VALWKGKVYVGAW-------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEY---GVRGYIT  193 (677)
T ss_dssp             CEEETTEEEEECT-------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTT---CCBCEEE
T ss_pred             ceEECCEEEEEcC-------CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEeccccc---CCCCEEE
Confidence            4556888888642       1358999998764  876422 1110011222345578888875432111   1246799


Q ss_pred             EEECCCCc--EEeC
Q 016877          194 VLDTETKK--WQDL  205 (381)
Q Consensus       194 ~yd~~~~~--W~~~  205 (381)
                      .||.++.+  |+.-
T Consensus       194 a~D~~tG~~~W~~~  207 (677)
T 1kb0_A          194 AYDAETGERKWRWF  207 (677)
T ss_dssp             EEETTTCCEEEEEE
T ss_pred             EEECCCCcEEEEec
Confidence            99998765  8653

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=80.99  E-value=14  Score=33.21  Aligned_cols=93  Identities=10%  Similarity=-0.039  Sum_probs=47.7

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+.+-...  +........++.+  ++..++.|+.+      ..+.++|+.+.+....-....    .-.++
T Consensus       145 ~~i~iwd~~~~~~~~~--~~~h~~~v~~~~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~----~v~~~  212 (393)
T 1erj_A          145 RLIRIWDIENRKIVMI--LQGHEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLSIED----GVTTV  212 (393)
T ss_dssp             SCEEEEETTTTEEEEE--ECCCSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSS----CEEEE
T ss_pred             CeEEEEECCCCcEEEE--EccCCCCEEEEEEcCCCCEEEEecCC------CcEEEEECCCCeeEEEEEcCC----CcEEE
Confidence            3566777766543221  1111111122222  45556666654      357888988876543222221    12233


Q ss_pred             EEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCcE
Q 016877          168 VTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKW  202 (381)
Q Consensus       168 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W  202 (381)
                      +..  ++++++.|+.++        .+..||..+..-
T Consensus       213 ~~~~~~~~~l~~~s~d~--------~v~iwd~~~~~~  241 (393)
T 1erj_A          213 AVSPGDGKYIAAGSLDR--------AVRVWDSETGFL  241 (393)
T ss_dssp             EECSTTCCEEEEEETTS--------CEEEEETTTCCE
T ss_pred             EEECCCCCEEEEEcCCC--------cEEEEECCCCcE
Confidence            332  567777776544        377888887653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=80.48  E-value=47  Score=32.76  Aligned_cols=96  Identities=17%  Similarity=0.187  Sum_probs=56.9

Q ss_pred             EEEECCEEEEEecCCCCCCcccceEEEeCCCC--eEecCCCCCCCCc------cceEEEEEeCCEEEEEcCCCCCCCCCC
Q 016877          117 AIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDN--TWGGRFDMPREMA------HSHLGMVTDGRYIYVVTGQYGPQCRGP  188 (381)
Q Consensus       117 ~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~--~W~~~~~~~~~~~------r~~~~~~~~~~~iyv~GG~~~~~~~~~  188 (381)
                      -++.++.||+....       ..++++|.++.  .|+.-...+....      ....+.++.+++||+...         
T Consensus        66 P~v~~g~vyv~~~~-------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~---------  129 (689)
T 1yiq_A           66 PIVVDGVMYTTGPF-------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL---------  129 (689)
T ss_dssp             CEEETTEEEEECGG-------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---------
T ss_pred             CEEECCEEEEEcCC-------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---------
Confidence            35679999997642       35899998876  4887443321000      012235668899887642         


Q ss_pred             cceEEEEECCCCc--EEeCCC-CCC--CCcccEEEEECCEEEEEc
Q 016877          189 TAHTFVLDTETKK--WQDLPP-LPV--PRYAPATQLWRGRLHVMG  228 (381)
Q Consensus       189 ~~~~~~yd~~~~~--W~~~~~-~p~--~r~~~~~~~~~~~lyv~G  228 (381)
                      ...++.+|.+|.+  |+.-.. -+.  .....+-++.++.+|+-.
T Consensus       130 dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~  174 (689)
T 1yiq_A          130 DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGN  174 (689)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECC
T ss_pred             CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEe
Confidence            2458899988764  876432 111  122223456788888743

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=80.14  E-value=44  Score=32.26  Aligned_cols=129  Identities=12%  Similarity=0.045  Sum_probs=65.0

Q ss_pred             ceEeecCCC------CCeEEcc-CCCCCCCCceEEEECCEEEEEecCCCCCC--cccceEEEeCC-CC---eEecCCCCC
Q 016877           91 TFQDLPAPE------LKWEKMK-AAPVPRLDGAAIQIKNLLYVFAGYGSIDY--VHSHVDIYNFT-DN---TWGGRFDMP  157 (381)
Q Consensus        91 ~~~~~~~~~------~~W~~l~-~~p~~r~~~~~~~~~~~iyv~GG~~~~~~--~~~~~~~yd~~-~~---~W~~~~~~~  157 (381)
                      .++.+|..+      .+.+.+. .-+. ........-+++.+++...+....  ...+++++|.. +.   +.+.+..-.
T Consensus       162 ~i~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          162 FLAAVPLDGSAAADRSAVRELSDDAHR-FVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEETTSTTTTCGGGSEESSCSCSS-EECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             EEEEEECCCCccccCCceeEEEecCCC-cccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            566777766      5555544 2111 111112233554444444332211  12469999998 56   444443211


Q ss_pred             CCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCC----c---ccEEEEE-CCEEEEEc
Q 016877          158 REMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPR----Y---APATQLW-RGRLHVMG  228 (381)
Q Consensus       158 ~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r----~---~~~~~~~-~~~lyv~G  228 (381)
                      .   ......+. -++++|+.+..++      ...++++|+++.+++.+.+.....    .   ....+.. ++++++.+
T Consensus       241 ~---~~~~~~~~spdg~l~~~~~~~~------~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          241 E---EAIAQAEWAPDGSLIVATDRTG------WWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             T---BCEEEEEECTTSCEEEEECTTS------SCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             C---ceEcceEECCCCeEEEEECCCC------CeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            1   12223333 3667777765433      347999999898898875432111    0   1123333 66777665


Q ss_pred             c
Q 016877          229 G  229 (381)
Q Consensus       229 G  229 (381)
                      .
T Consensus       312 ~  312 (662)
T 3azo_A          312 G  312 (662)
T ss_dssp             B
T ss_pred             E
Confidence            4

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=80.09  E-value=30  Score=30.24  Aligned_cols=59  Identities=10%  Similarity=0.079  Sum_probs=28.9

Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEe-CCCCCCCCcccEEEE-ECCEEEEEccCCCCCCCCCccceEe
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQD-LPPLPVPRYAPATQL-WRGRLHVMGGSGENRYTPEVDHWSL  244 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~  244 (381)
                      ++.+.+.|+.+        ..+..+|..+.+-.. +..  ....-.+++. -+++.++.|+.++     .+..|++
T Consensus        87 ~~~~l~s~s~D--------~~v~lwd~~~~~~~~~~~~--h~~~v~~v~~sp~~~~l~s~~~d~-----~i~~wd~  147 (343)
T 2xzm_R           87 ENCFAISSSWD--------KTLRLWDLRTGTTYKRFVG--HQSEVYSVAFSPDNRQILSAGAER-----EIKLWNI  147 (343)
T ss_dssp             STTEEEEEETT--------SEEEEEETTSSCEEEEEEC--CCSCEEEEEECSSTTEEEEEETTS-----CEEEEES
T ss_pred             CCCEEEEEcCC--------CcEEEEECCCCcEEEEEcC--CCCcEEEEEECCCCCEEEEEcCCC-----EEEEEec
Confidence            44556666543        347788888765322 111  1111122222 2455666666543     4556653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	381
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	3e-08
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	9e-07
d1k3ia3	387	b.69.1.1 (A:151-537) Galactose oxidase, central do	8e-06
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	8e-08
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	2e-07
d1zgka1	288	b.68.11.1 (A:322-609) Kelch-like ECH-associated pr	4e-06

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 39/359 (10%), Positives = 91/359 (25%), Gaps = 31/359 (8%)

Query: 11  TTPSPARVVLSIFVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHN--SIILPNNGP 68
           T   P     +      G  L+   +   +   +   + + S+W P     S        
Sbjct: 14  TIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTK 73

Query: 69  QKGENIGVKTKKD----VVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLL 124
                 G+    +    V        T     + +                +A      +
Sbjct: 74  HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV 133

Query: 125 YVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS--HLGMVTDGRYIYVVTGQYG 182
           +   G  S      + ++Y+ +  TW    +       +    G+     + ++   + G
Sbjct: 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKG 193

Query: 183 P--QCRGPTAHTFVLDTETKKWQDLPPLPVPRY---------APATQLWRGRLHVMGGSG 231
              Q    TA  +   + +   +        R          A      +G++   GGS 
Sbjct: 194 SVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP 253

Query: 232 ENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVV--VDDRLLVIGGQEGDFM 289
           + + +    +  +                            V   D    + GGQ     
Sbjct: 254 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP 313

Query: 290 AKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGG 348
            +  +P+F        +Y       ++  +           +   + +L +  +   GG
Sbjct: 314 FEDSTPVFTP-----EIYVP-----EQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGG 362

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 48.3 bits (113), Expect = 9e-07
 Identities = 31/242 (12%), Positives = 54/242 (22%), Gaps = 24/242 (9%)

Query: 96  PAPEL-KWEKMKAAPVPRLDGAAIQIKNLLYVFAGY-----GSIDYVHSHVDIYNFTDNT 149
           P P L +W      P+     A       + +++ Y     G      +    ++ +   
Sbjct: 4   PQPGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGI 63

Query: 150 WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLP 209
              R     +      G+  DG       GQ           T + D+ +  W   P + 
Sbjct: 64  VSDRTVTVTKHDMFCPGISMDG------NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQ 117

Query: 210 VPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHR 269
           V            +       G            +  K+G+      +T   +P    + 
Sbjct: 118 VA--------RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNP 169

Query: 270 ACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLDDEMKWKVLPSMPKPD 329
                   L         F  K GS            Y            K         
Sbjct: 170 MLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTS----GSGDVKSAGKRQSNR 225

Query: 330 SH 331
             
Sbjct: 226 GV 227

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} Length = 387

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

 Score = 45.2 bits (105), Expect = 8e-06
 Identities = 18/136 (13%), Positives = 35/136 (25%), Gaps = 6/136 (4%)

Query: 107 AAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLG 166
           A     + G  +             + +     +     + NT      +          
Sbjct: 236 AVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSV 295

Query: 167 MVTDGRYIYVVTGQYGPQC---RGPTAHTFVLDTETKKWQDLPPLPVPRY--APATQLWR 221
           ++ DG   ++  GQ          P     +   E   +    P  + R   + +  L  
Sbjct: 296 VLPDGS-TFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPD 354

Query: 222 GRLHVMGGSGENRYTP 237
           GR+   GG      T 
Sbjct: 355 GRVFNGGGGLCGDCTT 370

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 8e-08
 Identities = 33/277 (11%), Positives = 57/277 (20%), Gaps = 70/277 (25%)

Query: 101 KWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREM 160
            W ++    VPR   A   +  LLY   G  +    ++     +  +             
Sbjct: 30  TWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMS 89

Query: 161 AHSHLGMVTDGRYIYVVTGQY--------------------------------------- 181
              +   V          G                                         
Sbjct: 90  VPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNR 149

Query: 182 ------GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRY 235
                 G               E  +W+ +  +   R      +    ++  GG      
Sbjct: 150 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 209

Query: 236 TPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSP 295
              V+ +           + W    P+          V   R+ V+GG +G         
Sbjct: 210 LNSVERY-------DVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGH-------- 254

Query: 296 IFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSH 331
                       D V   D D   W  +  M    S 
Sbjct: 255 ---------TFLDSVECYDPDTDTWSEVTRMTSGRSG 282

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (116), Expect = 2e-07
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS 230
           GR IY   G +    R   ++    +     W  L  L VPR   A  +  G L+ +GG 
Sbjct: 4   GRLIYTAGGYF----RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGR 59

Query: 231 GENRYTPEVDHW 242
             +         
Sbjct: 60  NNSPDGNTDSSA 71

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 288

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 4e-06
 Identities = 27/145 (18%), Positives = 44/145 (30%), Gaps = 13/145 (8%)

Query: 130 YGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPT 189
            G  D  +       +       R         S  G+      IY   G      +   
Sbjct: 154 VGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYD---GQDQL 210

Query: 190 AHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDG 249
                 D ET+ W  + P+   R A    + +GR++V+GG   + +   V+ +       
Sbjct: 211 NSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYD------ 264

Query: 250 KPLEKEWR--TEIPIPRGGPHRACV 272
            P    W   T +   R G     V
Sbjct: 265 -PDTDTWSEVTRMTSGRSG-VGVAV 287

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	381
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	100.0
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	99.96
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	96.64
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	96.32
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	96.3
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	95.85
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.36
d1tbga_	340	beta1-subunit of the signal-transducing G protein	95.06
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	94.91
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	94.85
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.58
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.11
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.92
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	93.27
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	93.16
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	92.6
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	92.52
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	92.23
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	91.43
d1tbga_	340	beta1-subunit of the signal-transducing G protein	90.47
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.7
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	89.65
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	88.63
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	87.95
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	87.52
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	87.2
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	87.12
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	86.73
d1itva_	195	Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId:	85.89
d1su3a2	195	Collagenase (MMP1), C-terminal domain {Human (Homo	85.73
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	83.38
d1pexa_	192	Collagenase-3 (MMP-13), C-terminal domain {Human (	82.6
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	82.54
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	82.31
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	81.51
d1qhua1	192	Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId:	80.91

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-42  Score=306.70  Aligned_cols=253  Identities=18%  Similarity=0.279  Sum_probs=216.5

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCC---CCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSI---DYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~---~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      .++.||+.+++|++++++|.+|.+|+++.++++|||+||....   ....+++++||+.+++|+.++++|.  +|..|++
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~--~r~~~~~   97 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSV--PRNRIGV   97 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSS--CCBTCEE
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhcccccccccccccccc--eecceec
Confidence            4667777888999999999999999999999999999997432   2345789999999999999999987  4788999


Q ss_pred             EEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeee
Q 016877          168 VTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVK  247 (381)
Q Consensus       168 ~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~  247 (381)
                      ++.++++|++||..+..   .+++++.||+.+++|...+.++.+|..|+++++++++|++||...........       
T Consensus        98 ~~~~~~i~~~gg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~GG~~~~~~~~~~~-------  167 (288)
T d1zgka1          98 GVIDGHIYAVGGSHGCI---HHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAE-------  167 (288)
T ss_dssp             EEETTEEEEECCEETTE---ECCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEE-------
T ss_pred             cccceeeEEecceeccc---ccceeeeeccccCccccccccccccccceeeeeeecceEecCcccccccceEE-------
Confidence            99999999999987654   37889999999999999999999999999999999999999986544333333       


Q ss_pred             cCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCC
Q 016877          248 DGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMP  326 (381)
Q Consensus       248 ~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~  326 (381)
                      .||+.+++|......+..+..++++..+++|+++||.....                 ..++.+.|| .+++|+.++++|
T Consensus       168 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~p  230 (288)
T d1zgka1         168 CYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQD-----------------QLNSVERYDVETETWTFVAPMK  230 (288)
T ss_dssp             EEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSS-----------------BCCCEEEEETTTTEEEECCCCS
T ss_pred             EeeccccccccccccccccccccccceeeeEEEecCccccc-----------------cccceeeeeecceeeecccCcc
Confidence            34588999999988888888889999999999999986543                 356789999 899999999888


Q ss_pred             CCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          327 KPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       327 ~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      .+|..  +++++++++|||+||.+...       .++++|+||+++++|+.++.|
T Consensus       231 ~~r~~--~~~~~~~~~l~v~GG~~~~~-------~~~~v~~yd~~~~~W~~~~~~  276 (288)
T d1zgka1         231 HRRSA--LGITVHQGRIYVLGGYDGHT-------FLDSVECYDPDTDTWSEVTRM  276 (288)
T ss_dssp             SCCBS--CEEEEETTEEEEECCBCSSC-------BCCEEEEEETTTTEEEEEEEC
T ss_pred             Ccccc--eEEEEECCEEEEEecCCCCe-------ecceEEEEECCCCEEEECCCC
Confidence            87765  45688999999999987654       567899999999999999875

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8e-35  Score=260.76  Aligned_cols=272  Identities=18%  Similarity=0.263  Sum_probs=232.2

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCCCCceeEEeee-ccccccc-------ccCcceEeecCCCCC
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQKGENIGVKTK-KDVVPKR-------ILPATFQDLPAPELK  101 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~~~~~~~~~~~-~~~~~~~-------~~~~~~~~~~~~~~~  101 (381)
                      ++++||++||.+. +.++++++||+++++ ..+++ +.+|..+.++..++ ++..++.       .....++.||+.+++
T Consensus         3 ~g~~iyv~GG~~~-~~~~~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~   81 (288)
T d1zgka1           3 VGRLIYTAGGYFR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQ   81 (288)
T ss_dssp             CCCCEEEECCBSS-SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTE
T ss_pred             cCCEEEEECCcCC-CCCceEEEEECCCCeEEECCCCCCccceeEEEEECCEEEEEeCcccCCCCccccchhhhccccccc
Confidence            5789999999764 578999999999999 77877 77899888887655 6666653       334578999999999


Q ss_pred             eEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCC
Q 016877          102 WEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQY  181 (381)
Q Consensus       102 W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~  181 (381)
                      |++++++|.+|..|+++.++++||++||..... ..++++.||+.+++|...+.++.  .|..++++..++++|++||..
T Consensus        82 w~~~~~~p~~r~~~~~~~~~~~i~~~gg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~~~~GG~~  158 (288)
T d1zgka1          82 WSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAPMLT--RRIGVGVAVLNRLLYAVGGFD  158 (288)
T ss_dssp             EEECCCCSSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCCCSS--CCBSCEEEEETTEEEEECCBC
T ss_pred             ccccccccceecceeccccceeeEEecceeccc-ccceeeeeccccCcccccccccc--ccccceeeeeeecceEecCcc
Confidence            999999999999999999999999999987544 45779999999999999988877  478899999999999999987


Q ss_pred             CCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecC
Q 016877          182 GPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIP  261 (381)
Q Consensus       182 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~  261 (381)
                      ....   ..+++.||+.+++|...+.++.++..++++..+++||++||............       ||..+++|+.+++
T Consensus       159 ~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~GG~~~~~~~~~~~~-------~~~~~~~~~~~~~  228 (288)
T d1zgka1         159 GTNR---LNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVER-------YDVETETWTFVAP  228 (288)
T ss_dssp             SSCB---CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEE-------EETTTTEEEECCC
T ss_pred             cccc---cceEEEeeccccccccccccccccccccccceeeeEEEecCccccccccceee-------eeecceeeecccC
Confidence            6443   67899999999999999999999999999999999999999876544433333       3478999999999


Q ss_pred             CCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcce
Q 016877          262 IPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEF  334 (381)
Q Consensus       262 ~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~  334 (381)
                      +|..|..++++.++++|||+||.+...                 ..++++.|| ++++|+.+++||.+|..+++
T Consensus       229 ~p~~r~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~R~~~~~  285 (288)
T d1zgka1         229 MKHRRSALGITVHQGRIYVLGGYDGHT-----------------FLDSVECYDPDTDTWSEVTRMTSGRSGVGV  285 (288)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBCSSC-----------------BCCEEEEEETTTTEEEEEEECSSCCBSCEE
T ss_pred             ccCcccceEEEEECCEEEEEecCCCCe-----------------ecceEEEEECCCCEEEECCCCCCCcEeEEE
Confidence            999999999999999999999986542                 467799999 99999999999999877643

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=100.00  E-value=7.1e-34  Score=265.20  Aligned_cols=319  Identities=11%  Similarity=0.054  Sum_probs=223.2

Q ss_pred             hheeEcCEEEEecCCCCC------cccceeeeeeCCCce-eeecC-CCCCC--CceeEEeee--cccccccccCcceEee
Q 016877           28 GFALVADFFWASSSKFTS------SYLNIASNWSPYHNS-IILPN-NGPQK--GENIGVKTK--KDVVPKRILPATFQDL   95 (381)
Q Consensus        28 ~~~~~~~~ly~~GG~~~~------~~~~~~~~~d~~~~~-~~~p~-~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~   95 (381)
                      +++..+++||++||....      ..+..++.|||.+++ ..++. ..+|.  ..+.+....  ++..++.. ...+..|
T Consensus        25 a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~-~~~~~~y  103 (387)
T d1k3ia3          25 AIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGND-AKKTSLY  103 (387)
T ss_dssp             EEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSS-TTCEEEE
T ss_pred             EEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCC-CcceeEe
Confidence            444448999999995432      344568899999999 55544 34443  344443322  55555443 3478999


Q ss_pred             cCCCCCeEEccCCCCCCCCceEEEE-CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccc-----------
Q 016877           96 PAPELKWEKMKAAPVPRLDGAAIQI-KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHS-----------  163 (381)
Q Consensus        96 ~~~~~~W~~l~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~-----------  163 (381)
                      |+.+++|++++++|.+|..|+++.+ +++||++||........+++++||+.+++|+.++.++.+..+.           
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             cCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence            9999999999999999999998887 5799999998877777889999999999999988765432111           


Q ss_pred             -eEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCC-------CCCCcccEEEE--ECCEEEEEccCCCC
Q 016877          164 -HLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPL-------PVPRYAPATQL--WRGRLHVMGGSGEN  233 (381)
Q Consensus       164 -~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~-------p~~r~~~~~~~--~~~~lyv~GG~~~~  233 (381)
                       .......++++|++||.        ....+.||+.+..|...+.+       +.++..+++..  .++++|++||....
T Consensus       184 ~~~~~~~~~G~~~~~g~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~  255 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPS--------TAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDY  255 (387)
T ss_dssp             SCCEEECGGGCEEECCSS--------SEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSS
T ss_pred             eeEEEEeCCCCEEEecCc--------CCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCC
Confidence             11222334566666552        46789999999999887543       23344444443  37999999997653


Q ss_pred             CCC-CCccceEeeeecCCccCCceEEecCCCCCCcceeEEEe-CCEEEEEccCCCCCCCCCCCCccccccCceeecCcee
Q 016877          234 RYT-PEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV-DDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVY  311 (381)
Q Consensus       234 ~~~-~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (381)
                      ... .........+..+++....|+...+||..|..++++.+ +++||++||......           ........+++
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~-----------~~~~~~~~~ve  324 (387)
T d1k3ia3         256 QDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIP-----------FEDSTPVFTPE  324 (387)
T ss_dssp             SSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCT-----------TCCCSBCCCCE
T ss_pred             CCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCcc-----------CCCCcEeceEE
Confidence            322 22233334455666777889989999999888887777 779999999864321           11112344577


Q ss_pred             EeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEc
Q 016877          312 MLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNL  370 (381)
Q Consensus       312 ~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~  370 (381)
                      .|| ++++|+.+++++.+|.+|.++++..|++|||+||........    ...++++|||
T Consensus       325 ~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~~~~~~~~----~~~~~e~y~P  380 (387)
T d1k3ia3         325 IYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGGLCGDCTT----NHFDAQIFTP  380 (387)
T ss_dssp             EEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECCCCTTCSC----CCCEEEEEEC
T ss_pred             EEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCCCcCCCCc----ccceEEEEcc
Confidence            888 899999999999999887655444589999999954322111    2457999997

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=99.96  E-value=1.5e-28  Score=228.87  Aligned_cols=267  Identities=13%  Similarity=0.058  Sum_probs=176.4

Q ss_pred             CCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCC-----CcccceEEEeCCCCeEecCCCCCCCCccceEEE-EEe
Q 016877           97 APELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSID-----YVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM-VTD  170 (381)
Q Consensus        97 ~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~-----~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~-~~~  170 (381)
                      |...+|++..++|..|.+++++..+++||||||.....     ..++.+++||+++++|..++.++.++.+..++. +..
T Consensus         6 p~~g~W~~~~~~p~~~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~   85 (387)
T d1k3ia3           6 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDG   85 (387)
T ss_dssp             TTSCEEEEEEECSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECT
T ss_pred             CCCCccCCcCCCCccccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEec
Confidence            55678999999999888777777789999999985432     233468999999999999888777655544444 446


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCCCCC-CCCCccceE-----
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSGENR-YTPEVDHWS-----  243 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~-~~~~~~~~~-----  243 (381)
                      +++||++||.+.       +++++||+.+++|+.+++||.+|..|+++++ ++++|++||..... ...+.+.|+     
T Consensus        86 ~g~i~v~Gg~~~-------~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          86 NGQIVVTGGNDA-------KKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             TSCEEEECSSST-------TCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             CCcEEEeecCCC-------cceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            789999998543       5689999999999999999999999999987 67999999974321 122222221     


Q ss_pred             --e------------------------------------------eeecCCccCCceEEecCCC-------CCCcceeEE
Q 016877          244 --L------------------------------------------AVKDGKPLEKEWRTEIPIP-------RGGPHRACV  272 (381)
Q Consensus       244 --~------------------------------------------~~~~~~~~~~~W~~~~~~p-------~~~~~~~~~  272 (381)
                        .                                          .++.+++.+..|+....++       ..+...++.
T Consensus       159 W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         159 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence              0                                          1122344444444432211       111111221


Q ss_pred             --EeCCEEEEEccCCCCCCCCCCCCccccccCceeecCceeEeC-CCCCeEEcCCCCCCCCCcceEEEEECCEEEEEccc
Q 016877          273 --VVDDRLLVIGGQEGDFMAKPGSPIFKCSRRNEVVYDDVYMLD-DEMKWKVLPSMPKPDSHIEFAWVLVNNSIVIVGGT  349 (381)
Q Consensus       273 --~~~~~l~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd-~~~~W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~  349 (381)
                        ..++++|++||.......         .........+++.++ ....|+.++.||.+|..+.+ +++.|++|||+||.
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~-~~~~dg~i~v~GG~  308 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDS---------DATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTS-VVLPDGSTFITGGQ  308 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSS---------BCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEE-EECTTSCEEEECCB
T ss_pred             eeccCCceEEEEeccCCCCC---------cccceeecccccccccCCCceeecccccccccccee-eeccCCeEEEECCc
Confidence              236889999997643211         011111122333444 45678889999988876432 34447899999997


Q ss_pred             ccccCCceeeeeecceEEEEcCCCceEEeecC
Q 016877          350 TEKHPTTKKMVLVGEIFQFNLNTLVAVLNAML  381 (381)
Q Consensus       350 ~~~~~~~~~~~~~~~v~~yd~~~~~W~~i~~l  381 (381)
                      ........ ...+.++++||+++++|+.++.|
T Consensus       309 ~~~~~~~~-~~~~~~ve~Ydp~~~~W~~~~~~  339 (387)
T d1k3ia3         309 RRGIPFED-STPVFTPEIYVPEQDTFYKQNPN  339 (387)
T ss_dssp             SBCCTTCC-CSBCCCCEEEEGGGTEEEECCCC
T ss_pred             ccCccCCC-CcEeceEEEEECCCCeEEECCCC
Confidence            64332111 11455799999999999998765

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=96.64  E-value=0.012  Score=49.04  Aligned_cols=142  Identities=18%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEe--ee-cccccccccCcceEeecCCCCCeEEccCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVK--TK-KDVVPKRILPATFQDLPAPELKWEKMKAA  108 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~  108 (381)
                      .++||.+..++     .+..+|+++++  ..++...  ...+++..  ++ .+..+  .....+..+|..+.+-..  .+
T Consensus         2 ~~~yV~~~~~~-----~v~v~D~~t~~~~~~i~~g~--~p~~va~spdG~~l~v~~--~~~~~i~v~d~~t~~~~~--~~   70 (301)
T d1l0qa2           2 TFAYIANSESD-----NISVIDVTSNKVTATIPVGS--NPMGAVISPDGTKVYVAN--AHSNDVSIIDTATNNVIA--TV   70 (301)
T ss_dssp             EEEEEEETTTT-----EEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEE--GGGTEEEEEETTTTEEEE--EE
T ss_pred             eEEEEEECCCC-----EEEEEECCCCeEEEEEECCC--CceEEEEeCCCCEEEEEE--CCCCEEEEEECCCCceee--ee
Confidence            37899876544     67899999998  4444421  11233322  11 12111  123467888887765322  22


Q ss_pred             CCCCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCC
Q 016877          109 PVPRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQ  184 (381)
Q Consensus       109 p~~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~  184 (381)
                      +....-+.++.. ++ .+++.+..+      ..+.++|..+++....-....    ....++.  .+..+++.+..    
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~dg~~~~~~~~~----  136 (301)
T d1l0qa2          71 PAGSSPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNG----  136 (301)
T ss_dssp             ECSSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETT----
T ss_pred             ecccccccccccccccccccccccc------ceeeecccccceeeeeccccc----cceEEEeecCCCeeeeeecc----
Confidence            222222333333 33 555544322      346778888776554322221    1122333  23455555432    


Q ss_pred             CCCCcceEEEEECCCCcEEe
Q 016877          185 CRGPTAHTFVLDTETKKWQD  204 (381)
Q Consensus       185 ~~~~~~~~~~yd~~~~~W~~  204 (381)
                          ...+..++..+.+...
T Consensus       137 ----~~~~~~~~~~~~~~~~  152 (301)
T d1l0qa2         137 ----DKTVSVINTVTKAVIN  152 (301)
T ss_dssp             ----TTEEEEEETTTTEEEE
T ss_pred             ----ccceeeeeccccceee
Confidence                2446778888776544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.32  E-value=0.19  Score=41.43  Aligned_cols=23  Identities=9%  Similarity=-0.041  Sum_probs=16.8

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++.+.+.|+.++     .+..||..+++
T Consensus        23 dg~~l~s~s~Dg-----~v~vWd~~~~~   45 (299)
T d1nr0a2          23 DGKTLFSADAEG-----HINSWDISTGI   45 (299)
T ss_dssp             TSSEEEEEETTS-----CEEEEETTTCC
T ss_pred             CCCEEEEEcCCC-----eEEEEECCCCc
Confidence            556667777665     57889998877

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.30  E-value=0.11  Score=44.97  Aligned_cols=129  Identities=10%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEE-E-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEE
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAI-Q-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMV  168 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~-~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~  168 (381)
                      .+..||..++++..+..+......-.+. . -++..++.||.+      ..+.++|+.+++|.....+... .+.-.++.
T Consensus        30 ~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~-~~~v~~i~  102 (371)
T d1k8kc_          30 EVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRI-NRAARCVR  102 (371)
T ss_dssp             EEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCC-SSCEEEEE
T ss_pred             EEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECC------CeEEEEeecccccccccccccc-cccccccc
Confidence            5667777777776665443222222222 2 245666667654      2478889999999876544332 12223333


Q ss_pred             Ee-CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcc-cEEEEE-CCEEEEEccCCC
Q 016877          169 TD-GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYA-PATQLW-RGRLHVMGGSGE  232 (381)
Q Consensus       169 ~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~lyv~GG~~~  232 (381)
                      .. +++.++.|+.++      .-.++.++.....+........-+.. .++... ++++++.|+.++
T Consensus       103 ~~p~~~~l~~~s~d~------~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~  163 (371)
T d1k8kc_         103 WAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  163 (371)
T ss_dssp             ECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             cccccccceeecccC------cceeeeeecccccccccccccccccccccccccccccceeccccCc
Confidence            32 455556665433      34566777777666543322211211 122222 456667776543

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.85  E-value=0.083  Score=45.75  Aligned_cols=141  Identities=11%  Similarity=0.111  Sum_probs=71.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.++++|+.+      ..+.+||..++++..+..+... ...-.+++.. +++..+.||.++        .+..+|+.+
T Consensus        18 dg~~la~~~~~------~~i~iw~~~~~~~~~~~~l~gH-~~~V~~l~fsp~~~~l~s~s~D~--------~i~vWd~~~   82 (371)
T d1k8kc_          18 DRTQIAICPNN------HEVHIYEKSGNKWVQVHELKEH-NGQVTGVDWAPDSNRIVTCGTDR--------NAYVWTLKG   82 (371)
T ss_dssp             TSSEEEEECSS------SEEEEEEEETTEEEEEEEEECC-SSCEEEEEEETTTTEEEEEETTS--------CEEEEEEET
T ss_pred             CCCEEEEEeCC------CEEEEEECCCCCEEEEEEecCC-CCCEEEEEECCCCCEEEEEECCC--------eEEEEeecc
Confidence            55667777653      3488899988888876554321 0111233333 455556666433        377889888


Q ss_pred             CcEEeCCCCCCCCc-ccEEEEE-CCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEe--C
Q 016877          200 KKWQDLPPLPVPRY-APATQLW-RGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVV--D  275 (381)
Q Consensus       200 ~~W~~~~~~p~~r~-~~~~~~~-~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~--~  275 (381)
                      ..|........... -.++... +++.++.|+.+.     ....|.+.     .....+..............++.+  +
T Consensus        83 ~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~-----~i~i~~~~-----~~~~~~~~~~~~~~~~~~v~~v~~~p~  152 (371)
T d1k8kc_          83 RTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSR-----VISICYFE-----QENDWWVCKHIKKPIRSTVLSLDWHPN  152 (371)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTS-----SEEEEEEE-----TTTTEEEEEEECTTCCSCEEEEEECTT
T ss_pred             cccccccccccccccccccccccccccceeecccC-----cceeeeee-----ccccccccccccccccccccccccccc
Confidence            88876654433222 2233322 555666665432     34455442     333334332222111111122322  5


Q ss_pred             CEEEEEccCCC
Q 016877          276 DRLLVIGGQEG  286 (381)
Q Consensus       276 ~~l~v~GG~~~  286 (381)
                      +++++.|+.++
T Consensus       153 ~~~l~s~s~D~  163 (371)
T d1k8kc_         153 SVLLAAGSCDF  163 (371)
T ss_dssp             SSEEEEEETTS
T ss_pred             ccceeccccCc
Confidence            66777776653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.36  E-value=0.6  Score=38.64  Aligned_cols=24  Identities=4%  Similarity=0.116  Sum_probs=17.9

Q ss_pred             EcCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           32 VADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        32 ~~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      .++.+.+.|+.++     .+..||..+.+
T Consensus        21 ~~~~~l~tgs~Dg-----~i~vWd~~~~~   44 (355)
T d1nexb2          21 FEDNYVITGADDK-----MIRVYDSINKK   44 (355)
T ss_dssp             EETTEEEEEETTT-----EEEEEETTTTE
T ss_pred             ECCCEEEEEeCCC-----eEEEEECCCCc
Confidence            3566677777665     68899998887

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.06  E-value=0.58  Score=38.59  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=17.9

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++.+.+.|+.++     .+-.||..++.
T Consensus        66 ~~~~l~sgs~Dg-----~v~iWd~~~~~   88 (340)
T d1tbga_          66 DSRLLVSASQDG-----KLIIWDSYTTN   88 (340)
T ss_dssp             TSSEEEEEETTT-----EEEEEETTTTE
T ss_pred             CCCEEEEEECCC-----ceeeeecccce
Confidence            666778887666     67889998887

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.46  Score=38.55  Aligned_cols=23  Identities=13%  Similarity=0.014  Sum_probs=17.0

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++.+.+.|+.++     .+-.||..+++
T Consensus        28 ~~~~l~s~s~Dg-----~i~iWd~~~~~   50 (317)
T d1vyhc1          28 VFSVMVSASEDA-----TIKVWDYETGD   50 (317)
T ss_dssp             SSSEEEEEESSS-----CEEEEETTTCC
T ss_pred             CCCEEEEEeCCC-----eEEEEECCCCC
Confidence            566777777665     67889988877

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=94.85  E-value=0.092  Score=44.15  Aligned_cols=23  Identities=0%  Similarity=-0.181  Sum_probs=18.1

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++..+++++.++     .+..||+.+++
T Consensus         7 ~~~~l~~~~~~~-----~v~v~D~~t~~   29 (346)
T d1jmxb_           7 GHEYMIVTNYPN-----NLHVVDVASDT   29 (346)
T ss_dssp             TCEEEEEEETTT-----EEEEEETTTTE
T ss_pred             CCcEEEEEcCCC-----EEEEEECCCCC
Confidence            566777776554     78999999998

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.58  E-value=0.54  Score=39.28  Aligned_cols=68  Identities=12%  Similarity=0.003  Sum_probs=33.9

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+++.|+.++      .+.+||..+.+......++... ..-.+++. .+++.++.+|.+..      ..+.++|.++
T Consensus        69 ~g~~latg~~dg------~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~d~~~l~~~~~~~~------~~~~v~~~~~  135 (311)
T d1nr0a1          69 SGYYCASGDVHG------NVRIWDTTQTTHILKTTIPVFS-GPVKDISWDSESKRIAAVGEGRE------RFGHVFLFDT  135 (311)
T ss_dssp             TSSEEEEEETTS------EEEEEESSSTTCCEEEEEECSS-SCEEEEEECTTSCEEEEEECCSS------CSEEEEETTT
T ss_pred             CCCeEeccccCc------eEeeeeeecccccccccccccc-Ccccccccccccccccccccccc------cccccccccc
Confidence            567777887653      4778888876543221222110 11122333 34566666653321      2245666665


Q ss_pred             Cc
Q 016877          200 KK  201 (381)
Q Consensus       200 ~~  201 (381)
                      .+
T Consensus       136 ~~  137 (311)
T d1nr0a1         136 GT  137 (311)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.11  E-value=0.98  Score=37.75  Aligned_cols=95  Identities=7%  Similarity=-0.017  Sum_probs=45.8

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|....+......+...........+  ++.+++.++.+      ..+..+|..+++-........   ..-.++
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~~~~~---~~v~~l  189 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHT---DGASCI  189 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCS---SCEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccc------ccccccccccccccccccccc---cccccc
Confidence            3566777766554443333222222222222  44566666543      247788888776433222111   111223


Q ss_pred             EE-eCCEEEEEcCCCCCCCCCCcceEEEEECCCCc
Q 016877          168 VT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKK  201 (381)
Q Consensus       168 ~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~  201 (381)
                      +. .++..++.|+.+        ..+..||..+.+
T Consensus       190 ~~s~~~~~~~~~~~d--------~~v~i~d~~~~~  216 (337)
T d1gxra_         190 DISNDGTKLWTGGLD--------NTVRSWDLREGR  216 (337)
T ss_dssp             EECTTSSEEEEEETT--------SEEEEEETTTTE
T ss_pred             ccccccccccccccc--------ccccccccccce
Confidence            33 344556666543        347788887764

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.92  E-value=1.3  Score=36.10  Aligned_cols=172  Identities=14%  Similarity=0.122  Sum_probs=81.1

Q ss_pred             ceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEE
Q 016877          139 HVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQ  218 (381)
Q Consensus       139 ~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~  218 (381)
                      .+..+|..+.+.........    .............+.|+.++        .+..+|+...+-...  +..........
T Consensus       118 ~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~--------~i~~~d~~~~~~~~~--~~~~~~~~~~~  183 (342)
T d2ovrb2         118 TLRVWDIETGQCLHVLMGHV----AAVRCVQYDGRRVVSGAYDF--------MVKVWDPETETCLHT--LQGHTNRVYSL  183 (342)
T ss_dssp             EEEEEESSSCCEEEEEECCS----SCEEEEEECSSCEEEEETTS--------CEEEEEGGGTEEEEE--ECCCSSCEEEE
T ss_pred             eEEEeecccccceeeeeccc----ccceeeccccceeeeecCCC--------eEEEeecccceeeEE--EcCcccccccc
Confidence            46777877776554322222    11223334444555555433        356677665442211  11111222334


Q ss_pred             EECCEEEEEccCCCCCCCCCccceEeeeecCCccCCceEEecCCCCCCcceeEEEeCCEEEEEccCCCCCCCCCCCCccc
Q 016877          219 LWRGRLHVMGGSGENRYTPEVDHWSLAVKDGKPLEKEWRTEIPIPRGGPHRACVVVDDRLLVIGGQEGDFMAKPGSPIFK  298 (381)
Q Consensus       219 ~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~  298 (381)
                      ..++..++.|+.++     .+..|++       .+.+-...  .........++..++++++.|+.++.           
T Consensus       184 ~~~~~~l~s~~~dg-----~i~~~d~-------~~~~~~~~--~~~~~~~v~~~~~~~~~l~s~s~d~~-----------  238 (342)
T d2ovrb2         184 QFDGIHVVSGSLDT-----SIRVWDV-------ETGNCIHT--LTGHQSLTSGMELKDNILVSGNADST-----------  238 (342)
T ss_dssp             EECSSEEEEEETTS-----CEEEEET-------TTCCEEEE--ECCCCSCEEEEEEETTEEEEEETTSC-----------
T ss_pred             cCCCCEEEEEeCCC-----eEEEeec-------ccceeeeE--ecccccceeEEecCCCEEEEEcCCCE-----------
Confidence            45677777776543     3445542       12221111  11111122344556667777776543           


Q ss_pred             cccCceeecCceeEeC-CCCC-eEEcCCCCCCCCCcceEEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          299 CSRRNEVVYDDVYMLD-DEMK-WKVLPSMPKPDSHIEFAWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       299 ~~~~~~~~~~~v~~yd-~~~~-W~~i~~~~~~~~~~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                                 +..|| ...+ ...+.. +..... ....+..++.+++.|+.++            .|.+||+++++
T Consensus       239 -----------i~iwd~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~s~Dg------------~i~iwd~~tg~  291 (342)
T d2ovrb2         239 -----------VKIWDIKTGQCLQTLQG-PNKHQS-AVTCLQFNKNFVITSSDDG------------TVKLWDLKTGE  291 (342)
T ss_dssp             -----------EEEEETTTCCEEEEECS-TTSCSS-CEEEEEECSSEEEEEETTS------------EEEEEETTTCC
T ss_pred             -----------EEEEecccccccccccc-cceeee-ceeecccCCCeeEEEcCCC------------EEEEEECCCCC
Confidence                       66666 3332 223322 111111 2334566777888887653            36777777654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=93.27  E-value=1.8  Score=35.73  Aligned_cols=126  Identities=10%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEE--CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQI--KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGM  167 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~  167 (381)
                      ..+..+|..+........++.....-.++.+  ++..++.+|.+...    .+.++|.++.+-..  .+... ...-.++
T Consensus        80 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~----~~~v~~~~~~~~~~--~l~~h-~~~v~~v  152 (311)
T d1nr0a1          80 GNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRER----FGHVFLFDTGTSNG--NLTGQ-ARAMNSV  152 (311)
T ss_dssp             SEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSC----SEEEEETTTCCBCB--CCCCC-SSCEEEE
T ss_pred             ceEeeeeeeccccccccccccccCccccccccccccccccccccccc----cccccccccccccc--ccccc-ccccccc
Confidence            3566777766654322222211111122222  45666666643222    24556666543222  22211 0111233


Q ss_pred             EEe--CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEE-CCEEEEEccCC
Q 016877          168 VTD--GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLW-RGRLHVMGGSG  231 (381)
Q Consensus       168 ~~~--~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~  231 (381)
                      +..  ++.+++.|+.++        .+..||..+.+-...-... ...-.++... ++++++.|+.+
T Consensus       153 ~~~~~~~~~l~sgs~d~--------~i~i~d~~~~~~~~~~~~~-~~~i~~v~~~p~~~~l~~~~~d  210 (311)
T d1nr0a1         153 DFKPSRPFRIISGSDDN--------TVAIFEGPPFKFKSTFGEH-TKFVHSVRYNPDGSLFASTGGD  210 (311)
T ss_dssp             EECSSSSCEEEEEETTS--------CEEEEETTTBEEEEEECCC-SSCEEEEEECTTSSEEEEEETT
T ss_pred             cccccceeeeccccccc--------ccccccccccccccccccc-cccccccccCcccccccccccc
Confidence            332  334566676443        3778888875533221111 1111222222 55666666654

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=1.8  Score=35.24  Aligned_cols=98  Identities=12%  Similarity=0.121  Sum_probs=47.0

Q ss_pred             EEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCCCCCCCCccceEeee
Q 016877          167 MVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGENRYTPEVDHWSLAV  246 (381)
Q Consensus       167 ~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~  246 (381)
                      ....++..++.|+.++        .+..||..+.+-........ .. -.+...++.+++.|+.++     .+..|+.  
T Consensus       182 ~~~~~~~~l~s~~~dg--------~i~~~d~~~~~~~~~~~~~~-~~-v~~~~~~~~~l~s~s~d~-----~i~iwd~--  244 (342)
T d2ovrb2         182 SLQFDGIHVVSGSLDT--------SIRVWDVETGNCIHTLTGHQ-SL-TSGMELKDNILVSGNADS-----TVKIWDI--  244 (342)
T ss_dssp             EEEECSSEEEEEETTS--------CEEEEETTTCCEEEEECCCC-SC-EEEEEEETTEEEEEETTS-----CEEEEET--
T ss_pred             cccCCCCEEEEEeCCC--------eEEEeecccceeeeEecccc-cc-eeEEecCCCEEEEEcCCC-----EEEEEec--
Confidence            3344565666776544        37788887765332211111 11 122333445666666443     3555553  


Q ss_pred             ecCCccCCc-eEEecCCCCCCcceeEEEeCCEEEEEccCCC
Q 016877          247 KDGKPLEKE-WRTEIPIPRGGPHRACVVVDDRLLVIGGQEG  286 (381)
Q Consensus       247 ~~~~~~~~~-W~~~~~~p~~~~~~~~~~~~~~l~v~GG~~~  286 (381)
                           ...+ ...+...........+...++.+++.|+.++
T Consensus       245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg  280 (342)
T d2ovrb2         245 -----KTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDG  280 (342)
T ss_dssp             -----TTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTS
T ss_pred             -----ccccccccccccceeeeceeecccCCCeeEEEcCCC
Confidence                 1222 1222222222222345566778888887653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.60  E-value=0.88  Score=38.53  Aligned_cols=65  Identities=11%  Similarity=-0.008  Sum_probs=33.8

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCCCCcceEEEEECC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCRGPTAHTFVLDTE  198 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~yd~~  198 (381)
                      ++..++.|+.+      ..+..+|..+..-........    ....++.  .++.+++.|+.++        .+..||..
T Consensus       174 ~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~--------~i~i~~~~  235 (388)
T d1erja_         174 SGDKLVSGSGD------RTVRIWDLRTGQCSLTLSIED----GVTTVAVSPGDGKYIAAGSLDR--------AVRVWDSE  235 (388)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEECSS----CEEEEEECSTTCCEEEEEETTS--------CEEEEETT
T ss_pred             ccccccccccc------eeeeeeecccccccccccccc----ccccccccCCCCCeEEEEcCCC--------eEEEeecc
Confidence            33445555432      247778887765444322222    1122222  2456666666443        37788888


Q ss_pred             CCcEE
Q 016877          199 TKKWQ  203 (381)
Q Consensus       199 ~~~W~  203 (381)
                      +....
T Consensus       236 ~~~~~  240 (388)
T d1erja_         236 TGFLV  240 (388)
T ss_dssp             TCCEE
T ss_pred             cCccc
Confidence            76643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=92.52  E-value=0.8  Score=37.06  Aligned_cols=145  Identities=17%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             CEEEEecCCCCCcccceeeeeeCCCce--eeecCCCCCCCceeEEeee-cccccccccCcceEeecCCCCCeEEccCCCC
Q 016877           34 DFFWASSSKFTSSYLNIASNWSPYHNS--IILPNNGPQKGENIGVKTK-KDVVPKRILPATFQDLPAPELKWEKMKAAPV  110 (381)
Q Consensus        34 ~~ly~~GG~~~~~~~~~~~~~d~~~~~--~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~  110 (381)
                      .+||+.+..++     .+..||..+++  ..++...  ...++..... ............+..++..+.+....-  ..
T Consensus        44 ~~l~v~~~~~~-----~i~v~d~~t~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~  114 (301)
T d1l0qa2          44 TKVYVANAHSN-----DVSIIDTATNNVIATVPAGS--SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTV--KT  114 (301)
T ss_dssp             SEEEEEEGGGT-----EEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE--EC
T ss_pred             CEEEEEECCCC-----EEEEEECCCCceeeeeeccc--cccccccccccccccccccccceeeecccccceeeeec--cc
Confidence            46888776443     68999999988  4444411  1122221111 111111112234555666555432221  11


Q ss_pred             CCCCceEEEE-CC-EEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE--eCCEEEEEcCCCCCCCC
Q 016877          111 PRLDGAAIQI-KN-LLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT--DGRYIYVVTGQYGPQCR  186 (381)
Q Consensus       111 ~r~~~~~~~~-~~-~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~  186 (381)
                      ......+... ++ .+++.+..+      ..+..++..+.+.........    ....++.  .++.+|+....      
T Consensus       115 ~~~~~~~~~~~dg~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~------  178 (301)
T d1l0qa2         115 GKSPLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGR----SPKGIAVTPDGTKVYVANFD------  178 (301)
T ss_dssp             SSSEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCS----SEEEEEECTTSSEEEEEETT------
T ss_pred             cccceEEEeecCCCeeeeeeccc------cceeeeeccccceeeecccCC----CceEEEeeccccceeeeccc------
Confidence            1111222222 33 555555332      236677887776554322221    1122233  24556665431      


Q ss_pred             CCcceEEEEECCCCcEEeC
Q 016877          187 GPTAHTFVLDTETKKWQDL  205 (381)
Q Consensus       187 ~~~~~~~~yd~~~~~W~~~  205 (381)
                        ......++....+....
T Consensus       179 --~~~~~~~~~~~~~~~~~  195 (301)
T d1l0qa2         179 --SMSISVIDTVTNSVIDT  195 (301)
T ss_dssp             --TTEEEEEETTTTEEEEE
T ss_pred             --ccccccccccceeeeec
Confidence              23456666666655443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=92.23  E-value=1.8  Score=35.40  Aligned_cols=102  Identities=6%  Similarity=-0.082  Sum_probs=48.6

Q ss_pred             ceeeeeeCCCce--eeecC-CCCCCCceeEEe--ee-cccccccccCcceEeecCCCCCeEEccCCCCCC----CCceEE
Q 016877           49 NIASNWSPYHNS--IILPN-NGPQKGENIGVK--TK-KDVVPKRILPATFQDLPAPELKWEKMKAAPVPR----LDGAAI  118 (381)
Q Consensus        49 ~~~~~~d~~~~~--~~~p~-~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~W~~l~~~p~~r----~~~~~~  118 (381)
                      +.+..||.++.+  ..++. .......+++..  +. .+..+  .....+..+|..+.+....-..+.+.    ..+.++
T Consensus        11 ~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~--~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~   88 (337)
T d1pbyb_          11 DKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATV--NKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA   88 (337)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEE--TTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEE--CCCCeEEEEECCCCcEEEEEecCCCcccccceeeEE
Confidence            378999999988  44544 122222222221  22 22222  12346889998887754433332221    122333


Q ss_pred             EE-C-CEEEEEecCCCC-----CCcccceEEEeCCCCeEec
Q 016877          119 QI-K-NLLYVFAGYGSI-----DYVHSHVDIYNFTDNTWGG  152 (381)
Q Consensus       119 ~~-~-~~iyv~GG~~~~-----~~~~~~~~~yd~~~~~W~~  152 (381)
                      .. + +.+|+.......     ......+..+|..+.+=..
T Consensus        89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  129 (337)
T d1pbyb_          89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRK  129 (337)
T ss_dssp             ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEE
T ss_pred             EcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEE
Confidence            32 3 356655432110     0112346778887765433

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=1.3  Score=36.84  Aligned_cols=67  Identities=9%  Similarity=0.121  Sum_probs=34.7

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe-CCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD-GRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++..++.|+.+      ..+.+||....+.+....+..... .-...+.. ++.+++.++.+        ..+..+|..+
T Consensus       108 dg~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~d--------~~i~~~~~~~  172 (337)
T d1gxra_         108 DGCTLIVGGEA------STLSIWDLAAPTPRIKAELTSSAP-ACYALAISPDSKVCFSCCSD--------GNIAVWDLHN  172 (337)
T ss_dssp             TSSEEEEEESS------SEEEEEECCCC--EEEEEEECSSS-CEEEEEECTTSSEEEEEETT--------SCEEEEETTT
T ss_pred             CCCEEEEeecc------cccccccccccccccccccccccc-cccccccccccccccccccc--------cccccccccc
Confidence            55666777764      247888887766554433322111 11223332 44455555432        3477888887


Q ss_pred             CcE
Q 016877          200 KKW  202 (381)
Q Consensus       200 ~~W  202 (381)
                      .+-
T Consensus       173 ~~~  175 (337)
T d1gxra_         173 QTL  175 (337)
T ss_dssp             TEE
T ss_pred             ccc
Confidence            653

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.47  E-value=3.7  Score=33.28  Aligned_cols=22  Identities=5%  Similarity=0.048  Sum_probs=13.7

Q ss_pred             CCEEEEEcccccccCCceeeeeecceEEEEcCCC
Q 016877          340 NNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTL  373 (381)
Q Consensus       340 ~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~  373 (381)
                      ++.+++.|+.++            .|.+||..+.
T Consensus       281 ~~~~l~~g~~dg------------~i~iwd~~~~  302 (340)
T d1tbga_         281 SGRLLLAGYDDF------------NCNVWDALKA  302 (340)
T ss_dssp             SSCEEEEEETTS------------CEEEEETTTC
T ss_pred             CCCEEEEEECCC------------EEEEEECCCC
Confidence            567777776553            3667776543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.70  E-value=3.4  Score=33.93  Aligned_cols=88  Identities=11%  Similarity=0.026  Sum_probs=50.9

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTETK  200 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~  200 (381)
                      ++.||.+=-      ....++++|+++++-+.. .+|.   .....+...++.+++..          .+.+.+||+++.
T Consensus        29 ~~~l~wvDi------~~~~I~r~d~~~g~~~~~-~~~~---~~~~i~~~~dg~l~va~----------~~gl~~~d~~tg   88 (295)
T d2ghsa1          29 SGTAWWFNI------LERELHELHLASGRKTVH-ALPF---MGSALAKISDSKQLIAS----------DDGLFLRDTATG   88 (295)
T ss_dssp             TTEEEEEEG------GGTEEEEEETTTTEEEEE-ECSS---CEEEEEEEETTEEEEEE----------TTEEEEEETTTC
T ss_pred             CCEEEEEEC------CCCEEEEEECCCCeEEEE-ECCC---CcEEEEEecCCCEEEEE----------eCccEEeecccc
Confidence            456776521      124589999998865543 2333   22233344677777653          145899999999


Q ss_pred             cEEeCCCCCCC----CcccEEEEECCEEEEEc
Q 016877          201 KWQDLPPLPVP----RYAPATQLWRGRLHVMG  228 (381)
Q Consensus       201 ~W~~~~~~p~~----r~~~~~~~~~~~lyv~G  228 (381)
                      +++.+.+.+..    |.+...+--++.+|+--
T Consensus        89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~  120 (295)
T d2ghsa1          89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGT  120 (295)
T ss_dssp             CEEEEECSSTTCTTEEEEEEEECTTSCEEEEE
T ss_pred             eeeEEeeeecCCCcccceeeEECCCCCEEEEe
Confidence            98887644322    22222222367777653

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.65  E-value=4.3  Score=32.87  Aligned_cols=122  Identities=8%  Similarity=-0.069  Sum_probs=59.0

Q ss_pred             ceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEEe
Q 016877           91 TFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVTD  170 (381)
Q Consensus        91 ~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~~  170 (381)
                      .+..+|..+.....  .+........++...+..++.|+.++      .+.++|..+..-........   .........
T Consensus       224 ~i~i~d~~~~~~~~--~~~~h~~~v~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~  292 (355)
T d1nexb2         224 TIRIWDLENGELMY--TLQGHTALVGLLRLSDKFLVSAAADG------SIRGWDANDYSRKFSYHHTN---LSAITTFYV  292 (355)
T ss_dssp             CEEEEETTTCCEEE--EECCCSSCCCEEEECSSEEEEECTTS------EEEEEETTTCCEEEEEECTT---CCCCCEEEE
T ss_pred             eEEeeecccccccc--ccccccccccccccccceeeeeeccc------ccccccccccceecccccCC---ceEEEEEcC
Confidence            46667766654322  12211222334555677777777653      47778887654222111111   112223345


Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccCCC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGSGE  232 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~  232 (381)
                      ++++++.|. +        ..+..||.++.+..........-.-.+++...+.+++.|+.++
T Consensus       293 ~~~~l~~g~-d--------~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~~~~~~~s~dg  345 (355)
T d1nexb2         293 SDNILVSGS-E--------NQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAVEKDG  345 (355)
T ss_dssp             CSSEEEEEE-T--------TEEEEEETTTCCBCCSCTTTTCSEEEEEEEETTEEEEEEESSS
T ss_pred             CCCEEEEEe-C--------CEEEEEECCCCCEEEEEecCCCCCEEEEEEcCCeEEEEEECCC
Confidence            666655442 2        3588899988753211111111122344455676666665543

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=88.63  E-value=4.9  Score=32.12  Aligned_cols=24  Identities=17%  Similarity=0.307  Sum_probs=16.0

Q ss_pred             ECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          339 VNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       339 ~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                      .++++++.|+.++            .+.+||+++.+
T Consensus       234 ~~~~~l~sgs~dg------------~i~iwd~~~~~  257 (299)
T d1nr0a2         234 PDNVRLATGSLDN------------SVIVWNMNKPS  257 (299)
T ss_dssp             TTSSEEEEEETTS------------CEEEEETTCTT
T ss_pred             ccccceEEEcCCC------------EEEEEECCCCC
Confidence            4677888887653            36777776644

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=87.95  E-value=4.4  Score=33.13  Aligned_cols=91  Identities=8%  Similarity=-0.041  Sum_probs=48.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++||+....+      ..++++|+... .+.+...+.   + ..+++. -++.+|+.+-..+      .-.....+...
T Consensus        38 dG~l~vt~~~~------~~I~~i~p~g~-~~~~~~~~~---~-~~gla~~~dG~l~v~~~~~~------~~~~~~~~~~~  100 (302)
T d2p4oa1          38 DGTIFVTNHEV------GEIVSITPDGN-QQIHATVEG---K-VSGLAFTSNGDLVATGWNAD------SIPVVSLVKSD  100 (302)
T ss_dssp             TSCEEEEETTT------TEEEEECTTCC-EEEEEECSS---E-EEEEEECTTSCEEEEEECTT------SCEEEEEECTT
T ss_pred             CCCEEEEeCCC------CEEEEEeCCCC-EEEEEcCCC---C-cceEEEcCCCCeEEEecCCc------eEEEEEecccc
Confidence            66898876532      35899998765 444444432   2 233443 4668888752211      11233344444


Q ss_pred             CcEEeCCCCCCCCcccEEEE-ECCEEEEEc
Q 016877          200 KKWQDLPPLPVPRYAPATQL-WRGRLHVMG  228 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~-~~~~lyv~G  228 (381)
                      .+-+.+...+.......++. -++++|+.-
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~  130 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTAD  130 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEE
T ss_pred             cceeeccccCCccccceeEEccCCCEEeec
Confidence            55455544554444344443 467777763

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=87.52  E-value=4.7  Score=36.56  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=45.5

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCCCCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEE
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRFDMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTF  193 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~  193 (381)
                      ..+..+++||+....       ..++++|.++.+  |+....-+.........-.+.++.+++-+......   ....+.
T Consensus       112 ~~~~~~~~v~~~~~~-------g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~---~~G~v~  181 (560)
T d1kv9a2         112 GVALWGDKVYVGTLD-------GRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYG---VRGFVS  181 (560)
T ss_dssp             CCEEEBTEEEEECTT-------SEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTC---CBCEEE
T ss_pred             CcceeCCeEEEEeCC-------CEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceecc---ccceEE
Confidence            455667888776431       358889988874  77643222211223345566788777533222211   135688


Q ss_pred             EEECCCCc--EEe
Q 016877          194 VLDTETKK--WQD  204 (381)
Q Consensus       194 ~yd~~~~~--W~~  204 (381)
                      .||.+|.+  |+.
T Consensus       182 a~D~~TG~~~W~~  194 (560)
T d1kv9a2         182 AYDADTGKLAWRF  194 (560)
T ss_dssp             EEETTTCCEEEEE
T ss_pred             EEECCCceEEeee
Confidence            99998865  654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.20  E-value=6.2  Score=31.72  Aligned_cols=180  Identities=12%  Similarity=0.058  Sum_probs=87.9

Q ss_pred             hhee-EcCEEEEecCCCCCcccceeeeeeCCCce-eeecC-CCCC----CCceeEEeee--cccccccccCcceEeecCC
Q 016877           28 GFAL-VADFFWASSSKFTSSYLNIASNWSPYHNS-IILPN-NGPQ----KGENIGVKTK--KDVVPKRILPATFQDLPAP   98 (381)
Q Consensus        28 ~~~~-~~~~ly~~GG~~~~~~~~~~~~~d~~~~~-~~~p~-~~~~----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~   98 (381)
                      ++|+ -++.|||.-.     ..+.+..||+.-+- ...+. ..+.    ...++.....  ............+..++..
T Consensus        27 gvavd~dg~i~VaD~-----~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          27 GVAVNAQNDIIVADT-----NNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             EEEECTTCCEEEEEG-----GGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             EEEEcCCCCEEEEEC-----CCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            4455 4678999854     23467889987544 34433 1111    1122221111  1111111223356667766


Q ss_pred             CCCeEEccCCCCCCCCceEEE-ECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEE
Q 016877           99 ELKWEKMKAAPVPRLDGAAIQ-IKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYV  176 (381)
Q Consensus        99 ~~~W~~l~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv  176 (381)
                      ...+...... .-..-...++ -++.+|+....      ...+.+||+..+.-........  ......++. .++.+|+
T Consensus       102 g~~~~~~~~~-~~~~p~~~avd~~G~i~v~~~~------~~~~~~~~~~g~~~~~~g~~~~--~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_         102 GQFVRKFGAT-ILQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKH--LEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             SCEEEEECTT-TCSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTT--CSSEEEEEECSSSEEEE
T ss_pred             ccceeecCCC-cccccceeccccCCcEEEEeec------cceeeEeccCCceeeccccccc--ccccceeeeccceeEEe
Confidence            5555444221 1111122222 24578887543      2347788887664443322111  122333443 4578998


Q ss_pred             EcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEE-ECCEEEEEcc
Q 016877          177 VTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQL-WRGRLHVMGG  229 (381)
Q Consensus       177 ~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~lyv~GG  229 (381)
                      ....        ...+++||+..+....+........-..+++ -++.|||.-.
T Consensus       173 ~d~~--------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~  218 (279)
T d1q7fa_         173 SDNR--------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGEILIADN  218 (279)
T ss_dssp             EEGG--------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCCEEEEEC
T ss_pred             eecc--------ccceeeeecCCceeeeecccccccCCcccccccCCeEEEEEC
Confidence            8542        4568999998776666542211111123333 3667998743

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.12  E-value=5.2  Score=30.69  Aligned_cols=90  Identities=12%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeE-ecCCC--CCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceEEEEEC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTW-GGRFD--MPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDT  197 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W-~~~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~  197 (381)
                      ++++|+|-|.        .+|+|+-.+-.. +.+..  +|.+..+-..+....++++|+|=|          +..++||.
T Consensus        64 ~~k~yfFkg~--------~~~~y~~~~~~~Pk~i~~~g~p~~~~~idaa~~~~~g~~Y~FkG----------~~y~ryd~  125 (195)
T d1itva_          64 SKKLFFFSGR--------QVWVYTGASVLGPRRLDKLGLGADVAQVTGALRSGRGKMLLFSG----------RRLWRFDV  125 (195)
T ss_dssp             TCCEEEEETT--------EEEEEETTEEEEEEEGGGGTCCTTCCCCCEEEECSTTEEEEEET----------TEEEEEET
T ss_pred             CCEEEEEecC--------EEEEEcCccccCCEEhhhcCCCCCchheeeEEEcCCCeEEEEec----------cEEEEEeC
Confidence            5678888653        366776332111 12222  333322333334445689999955          56899999


Q ss_pred             CCCcEEe-----C----CCCCCCCcccEEEEECCEEEEEccC
Q 016877          198 ETKKWQD-----L----PPLPVPRYAPATQLWRGRLHVMGGS  230 (381)
Q Consensus       198 ~~~~W~~-----~----~~~p~~r~~~~~~~~~~~lyv~GG~  230 (381)
                      .+++=..     +    +.+|  ..-.++...++++|+|-|.
T Consensus       126 ~~~~v~~gyPk~i~~~w~gvp--~~idaAf~~~~~~Yffkg~  165 (195)
T d1itva_         126 KAQMVDPRSASEVDRMFPGVP--LDTHDVFQFREKAYFCQDR  165 (195)
T ss_dssp             TTTEECGGGCEEHHHHSTTSC--SSCSEEEEETTEEEEEETT
T ss_pred             CcccccCCCccchhhhcCCCC--CCCcEEEEeCCcEEEEECC
Confidence            8764221     1    1233  3345666789999999663

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.73  E-value=3.8  Score=34.18  Aligned_cols=23  Identities=13%  Similarity=0.215  Sum_probs=16.1

Q ss_pred             cCEEEEecCCCCCcccceeeeeeCCCce
Q 016877           33 ADFFWASSSKFTSSYLNIASNWSPYHNS   60 (381)
Q Consensus        33 ~~~ly~~GG~~~~~~~~~~~~~d~~~~~   60 (381)
                      ++.+.+.|+.++     .+..||..+.+
T Consensus       132 ~~~~l~s~~~dg-----~v~i~~~~~~~  154 (388)
T d1erja_         132 DGKFLATGAEDR-----LIRIWDIENRK  154 (388)
T ss_dssp             TSSEEEEEETTS-----CEEEEETTTTE
T ss_pred             CCCcceeccccc-----ccccccccccc
Confidence            556667777655     56778887777

>d1itva_ b.66.1.1 (A:) Gelatinase B (MMP-9) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Gelatinase B (MMP-9)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.89  E-value=2.2  Score=32.92  Aligned_cols=24  Identities=8%  Similarity=0.270  Sum_probs=16.8

Q ss_pred             EEEEeCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          166 GMVTDGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       166 ~~~~~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      +++..++++|+|-|          ...|+|+...
T Consensus        11 Av~~~~G~~y~Fkg----------~~ywr~~~~~   34 (195)
T d1itva_          11 AIAEIGNQLYLFKD----------GKYWRFSEGR   34 (195)
T ss_dssp             EEEEETTEEEEEET----------TEEEEECCSS
T ss_pred             eEEEeCCEEEEEEC----------CEEEEEeCCC
Confidence            46678999999965          4467776543

>d1su3a2 b.66.1.1 (A:271-465) Collagenase (MMP1), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase (MMP1), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.73  E-value=6.1  Score=30.23  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=18.6

Q ss_pred             EEEEECCEEEEEcccccccCCceeeeeecceEEEEcCCCc
Q 016877          335 AWVLVNNSIVIVGGTTEKHPTTKKMVLVGEIFQFNLNTLV  374 (381)
Q Consensus       335 ~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~v~~yd~~~~~  374 (381)
                      ++...++++|+|-|..              .++||..+.+
T Consensus       158 AAf~~~g~~YfFkg~~--------------y~r~~~~~~~  183 (195)
T d1su3a2         158 AVFMKDGFFYFFHGTR--------------QYKFDPKTKR  183 (195)
T ss_dssp             EEEEETTEEEEEETTE--------------EEEEETTTTE
T ss_pred             EEEEECCeEEEEECCE--------------EEEEeCCcCE
Confidence            3456799999997743              6777776554

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=83.38  E-value=10  Score=30.81  Aligned_cols=80  Identities=9%  Similarity=0.001  Sum_probs=47.0

Q ss_pred             CcceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCC--CCccceEE
Q 016877           89 PATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPR--EMAHSHLG  166 (381)
Q Consensus        89 ~~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~--~~~r~~~~  166 (381)
                      ...++++|+.+++-+.. .+|.. ....+..-++.+++...        +.+..||+.+++++.+...+.  +..|....
T Consensus        39 ~~~I~r~d~~~g~~~~~-~~~~~-~~~i~~~~dg~l~va~~--------~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~  108 (295)
T d2ghsa1          39 ERELHELHLASGRKTVH-ALPFM-GSALAKISDSKQLIASD--------DGLFLRDTATGVLTLHAELESDLPGNRSNDG  108 (295)
T ss_dssp             GTEEEEEETTTTEEEEE-ECSSC-EEEEEEEETTEEEEEET--------TEEEEEETTTCCEEEEECSSTTCTTEEEEEE
T ss_pred             CCEEEEEECCCCeEEEE-ECCCC-cEEEEEecCCCEEEEEe--------CccEEeecccceeeEEeeeecCCCcccceee
Confidence            44688888888754322 23321 11222234667777542        248899999999888765433  22344555


Q ss_pred             EEEeCCEEEEEc
Q 016877          167 MVTDGRYIYVVT  178 (381)
Q Consensus       167 ~~~~~~~iyv~G  178 (381)
                      .+.-++.||+--
T Consensus       109 ~vd~~G~iw~~~  120 (295)
T d2ghsa1         109 RMHPSGALWIGT  120 (295)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEe
Confidence            555577888753

>d1pexa_ b.66.1.1 (A:) Collagenase-3 (MMP-13), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Collagenase-3 (MMP-13), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.60  E-value=8.3  Score=29.28  Aligned_cols=94  Identities=12%  Similarity=0.140  Sum_probs=48.6

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEec------CCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCC
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGG------RFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGP  188 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~------~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~  188 (381)
                      +++.+++.+|+|=|.        .+|.++.....+..      -+.+|...   ..+... .++++|+|-|         
T Consensus        13 Av~~~~g~~y~Fkg~--------~~wr~~~~~~~~~p~~i~~~w~~lp~~I---DAAf~~~~~~~~yffkg---------   72 (192)
T d1pexa_          13 AITSLRGETMIFKDR--------FFWRLHPQQVDAELFLTKSFWPELPNRI---DAAYEHPSHDLIFIFRG---------   72 (192)
T ss_dssp             EEEEETTEEEEEETT--------EEEEECSSSSCCEEEEHHHHCTTSCSSC---CEEEEETTTTEEEEEET---------
T ss_pred             EEEEcCCeEEEEECC--------EEEEEcCCCCCCcccchhhhCcCCCCcc---cceEEEcCCCEEEEEcC---------
Confidence            566789999999763        24444443322221      12333321   222222 3688998865         


Q ss_pred             cceEEEEECCCCcE---EeCCC--CCCCCccc-EEEEE--CCEEEEEccC
Q 016877          189 TAHTFVLDTETKKW---QDLPP--LPVPRYAP-ATQLW--RGRLHVMGGS  230 (381)
Q Consensus       189 ~~~~~~yd~~~~~W---~~~~~--~p~~r~~~-~~~~~--~~~lyv~GG~  230 (381)
                       +.+|+|+..+...   +.+..  +|.+-..- ++...  ++++|+|-|.
T Consensus        73 -~~~w~y~~~~~~~gyPk~i~~~~~~~~~~~idaA~~~~~~~~~y~Fkg~  121 (192)
T d1pexa_          73 -RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSGN  121 (192)
T ss_dssp             -TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEETT
T ss_pred             -CEEEEEcCCcccCCCCeEeeeeecCCCCCCccEEEEECCCCEEEEEeCC
Confidence             4578887655332   22322  22221222 33332  5889999663

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.54  E-value=9.8  Score=30.04  Aligned_cols=89  Identities=15%  Similarity=0.024  Sum_probs=51.3

Q ss_pred             CCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE-eCCEEEEEcCCCCCCCCCCcceEEEEECCC
Q 016877          121 KNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT-DGRYIYVVTGQYGPQCRGPTAHTFVLDTET  199 (381)
Q Consensus       121 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~  199 (381)
                      ++.+|+.-..      ...+..||+..+..........   ....++++ .++.||+.--        ..+.+.+|++..
T Consensus       150 ~g~~~v~~~~------~~~i~~~d~~~~~~~~~~~~~~---~~p~gi~~d~~g~l~vsd~--------~~~~i~~~~~~~  212 (260)
T d1rwia_         150 SGNVYVTDTD------NNRVVKLEAESNNQVVLPFTDI---TAPWGIAVDEAGTVYVTEH--------NTNQVVKLLAGS  212 (260)
T ss_dssp             TCCEEEEEGG------GTEEEEECTTTCCEEECCCSSC---CSEEEEEECTTCCEEEEET--------TTTEEEEECTTC
T ss_pred             CCCEeeeccc------cccccccccccceeeeeecccc---CCCccceeeeeeeeeeeec--------CCCEEEEEeCCC
Confidence            5578876532      2358889998776555432222   22345555 3568998731        135689999988


Q ss_pred             CcEEeCCCCCCCCcccEEEEE-CCEEEEE
Q 016877          200 KKWQDLPPLPVPRYAPATQLW-RGRLHVM  227 (381)
Q Consensus       200 ~~W~~~~~~p~~r~~~~~~~~-~~~lyv~  227 (381)
                      ...+....-...+ -+.+++- ++.|||.
T Consensus       213 ~~~~~~~~~~~~~-P~~i~~d~~g~l~va  240 (260)
T d1rwia_         213 TTSTVLPFTGLNT-PLAVAVDSDRTVYVA  240 (260)
T ss_dssp             SCCEECCCCSCCC-EEEEEECTTCCEEEE
T ss_pred             CeEEEEccCCCCC-eEEEEEeCCCCEEEE
Confidence            7766654322111 1234433 5678887

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=82.31  E-value=12  Score=33.77  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=45.5

Q ss_pred             eEEEECCEEEEEecCCCCCCcccceEEEeCCCCe--EecCC-CCCCCCccceEEEEEeCCEEEEEcCCCCCCCCCCcceE
Q 016877          116 AAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNT--WGGRF-DMPREMAHSHLGMVTDGRYIYVVTGQYGPQCRGPTAHT  192 (381)
Q Consensus       116 ~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~--W~~~~-~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~  192 (381)
                      +.+..++++|+...       ...++++|.++.+  |+.-. +.+.........-++.++.+++ |+......  ....+
T Consensus       123 g~~~~~~~v~~~t~-------~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~viv-g~~~~~~~--~~G~v  192 (573)
T d1kb0a2         123 GVALWKGKVYVGAW-------DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVII-GNGGAEYG--VRGYI  192 (573)
T ss_dssp             CCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEE-CCBCTTTC--CBCEE
T ss_pred             cceEECCcEEEEec-------ccceeeeccccccceecccCccCCcceEEeecceEEEeccEEE-eecccccc--ccceE
Confidence            45566888887542       1358889988775  87632 2222111223344667887765 44322211  24578


Q ss_pred             EEEECCCCc--EEe
Q 016877          193 FVLDTETKK--WQD  204 (381)
Q Consensus       193 ~~yd~~~~~--W~~  204 (381)
                      ..||.+|.+  |+.
T Consensus       193 ~a~D~~TG~~~W~~  206 (573)
T d1kb0a2         193 TAYDAETGERKWRW  206 (573)
T ss_dssp             EEEETTTCCEEEEE
T ss_pred             EEEecCCccceeee
Confidence            999999865  764

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=81.51  E-value=12  Score=30.30  Aligned_cols=123  Identities=12%  Similarity=-0.043  Sum_probs=68.2

Q ss_pred             cceEeecCCCCCeEEccCCCCCCCCceEEEECCEEEEEecCCCCCCcccceEEEeCCCCeEecCCCCCCCCccceEEEEE
Q 016877           90 ATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVHSHVDIYNFTDNTWGGRFDMPREMAHSHLGMVT  169 (381)
Q Consensus        90 ~~~~~~~~~~~~W~~l~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~~~r~~~~~~~  169 (381)
                      ..++.+|..+....+++.  ..+....+..-+++.+++.|.+..    ..++++|.++++-+++......    -..++.
T Consensus        24 g~v~v~d~~~~~~~~~~~--~~~v~~~~~spDg~~l~~~~~~~g----~~v~v~d~~~~~~~~~~~~~~~----v~~~~~   93 (360)
T d1k32a3          24 GQAFIQDVSGTYVLKVPE--PLRIRYVRRGGDTKVAFIHGTREG----DFLGIYDYRTGKAEKFEENLGN----VFAMGV   93 (360)
T ss_dssp             TEEEEECTTSSBEEECSC--CSCEEEEEECSSSEEEEEEEETTE----EEEEEEETTTCCEEECCCCCCS----EEEEEE
T ss_pred             CeEEEEECCCCcEEEccC--CCCEEEEEECCCCCEEEEEEcCCC----CEEEEEECCCCcEEEeeCCCce----EEeeee
Confidence            367888888887777632  223222223336766666554321    2488999999888876543331    122333


Q ss_pred             -eCCEEEEEcCCCCCCCCCCcceEEEEECCCCcEEeCCCCCCCCcccEEEEECCEEEEEccC
Q 016877          170 -DGRYIYVVTGQYGPQCRGPTAHTFVLDTETKKWQDLPPLPVPRYAPATQLWRGRLHVMGGS  230 (381)
Q Consensus       170 -~~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~  230 (381)
                       -+++..++++.        ...++.++.++.+...+...........+..-+++.+++...
T Consensus        94 spdg~~l~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~  147 (360)
T d1k32a3          94 DRNGKFAVVAND--------RFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFP  147 (360)
T ss_dssp             CTTSSEEEEEET--------TSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEE
T ss_pred             cccccccceecc--------ccccccccccccceeeeeecccccccchhhccceeeeeeecc
Confidence             35555555543        245788898887765544333333333333346666665543

>d1qhua1 b.66.1.1 (A:24-215) Hemopexin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 4-bladed beta-propeller
superfamily: Hemopexin-like domain
family: Hemopexin-like domain
domain: Hemopexin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=80.91  E-value=4.3  Score=31.10  Aligned_cols=44  Identities=20%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             CCEEEEEcCCCCCCCCCCcceEEEEECCCCc-----EEeCCCCCCCCcccEEEEECCEEEEEccC
Q 016877          171 GRYIYVVTGQYGPQCRGPTAHTFVLDTETKK-----WQDLPPLPVPRYAPATQLWRGRLHVMGGS  230 (381)
Q Consensus       171 ~~~iyv~GG~~~~~~~~~~~~~~~yd~~~~~-----W~~~~~~p~~r~~~~~~~~~~~lyv~GG~  230 (381)
                      ++++|+|-|          +..|+||..+.+     |..+   |  . .-+++..++++|+|-|.
T Consensus       110 ~~~~yfFkg----------~~yw~yd~~~~~~~~~~w~gi---p--~-~daA~~~~g~~YfFkg~  158 (192)
T d1qhua1         110 DEGILFFQG----------NRKWFWDLTTGTKKERSWPAV---G--N-CTSALRWLGRYYCFQGN  158 (192)
T ss_dssp             SSEEEEEET----------TEEEEEETTTTEEEEECCTTS---C--C-CSEEEEETTEEEEEETT
T ss_pred             CCeEEEEeC----------CeEEEEeCCCCCcccccccCc---C--C-cceeEEeCCcEEEEECC
Confidence            789999966          468999988763     3322   2  2 23555679999999764