Citrus Sinensis ID: 016890

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-
MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTLSSSQSPVHVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLGSFSS
cccccccccccccHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEHHHHHHHHHHcccccccc
ccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccccHHHHcccHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHEEHcHHHHHHHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcHHHHccccHHHHHEEEccccHHEEEccccEEEEccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccHHHHHcccccccEEEEEEEHHHHHHcHHcccccc
mrpnivseaglstranqwwesipfFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETslsgaqsrsvfglfnipakwYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYgffnllmpgtsfysAIESSSllstcirqpkfilctggnpsgyiptysgqntsssglfsgNIWSnlsswmpqretssqptqdsrfpgrgrtlsssqspvhvdsnlqarlldnsspenrshmivtetgdrlsderqpalgtavavdrvpagqQVFFIHIWSsifflpflgsfss
mrpnivseaglstranqwWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRtlsssqspvhvdsnLQARLldnsspenrsHMIVTetgdrlsdeRQPALGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLGSFSS
MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNailhlliallvahiPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTLSSSQSPVHVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLGSFSS
************TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYS********LFSGNIWSN************************************************************************LGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLG****
*****************WWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQP**********************************************************************************************************************AGQQVFFIHIWSSIFFLPFLGSF**
MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWM*****************************HVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLGSFSS
*********GLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQ*TSSSGLF*****************************************************************************************PAGQQVFFIHIWSSIFFLPFLGSF**
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKFILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTLSSSQSPVHVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAVDRVPAGQQVFFIHIWSSIFFLPFLGSFSS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query381 2.2.26 [Sep-21-2011]
Q8LB17403 Uncharacterized protein A yes no 0.937 0.885 0.660 1e-145
Q8BHC7315 Rhomboid-related protein yes no 0.443 0.536 0.279 6e-12
Q8TEB9315 Rhomboid-related protein yes no 0.433 0.523 0.285 9e-12
Q8RXW0334 Uncharacterized protein A no no 0.404 0.461 0.327 1e-11
Q4V8F3316 Rhomboid-related protein yes no 0.564 0.680 0.262 2e-11
Q5RBS4318 Rhomboid-related protein yes no 0.464 0.556 0.266 2e-10
Q4I4A4267 Rhomboid protein 2 OS=Gib yes no 0.540 0.771 0.275 4e-10
O74926251 Rhomboid protein 2 OS=Sch yes no 0.367 0.557 0.291 6e-10
Q6CDV6297 Rhomboid protein 2 OS=Yar yes no 0.614 0.787 0.256 2e-09
Q7S4V5276 Rhomboid protein 2 OS=Neu N/A no 0.564 0.778 0.239 3e-07
>sp|Q8LB17|Y3846_ARATH Uncharacterized protein At3g58460 OS=Arabidopsis thaliana GN=At3g58460 PE=1 SV=2 Back     alignment and function desciption
 Score =  514 bits (1325), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 243/368 (66%), Positives = 303/368 (82%), Gaps = 11/368 (2%)

Query: 1   MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVIS 60
           MRPNIV+EAG+ TR  QWW +IPF TS+VV+VCG IYLICLL GYD+FYE+CFLPSA+IS
Sbjct: 1   MRPNIVTEAGVQTRVGQWWNAIPFLTSSVVVVCGVIYLICLLTGYDTFYEVCFLPSAIIS 60

Query: 61  RFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLL 120
           RFQVYRFYT+I+FHGSLLHVLFNM+ALVP+GSELERIMGSVR+ Y+T+LLAT+NA+LHLL
Sbjct: 61  RFQVYRFYTAIIFHGSLLHVLFNMMALVPMGSELERIMGSVRLLYLTVLLATTNAVLHLL 120

Query: 121 IALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLI 180
           IA L  + PFY+  ++M+ECAIGFSG++FS+IVIETSLSG  SRSVFGLFN+PAK YP I
Sbjct: 121 IASLAGYNPFYQYDHLMNECAIGFSGILFSMIVIETSLSGVTSRSVFGLFNVPAKLYPWI 180

Query: 181 LLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKF 240
           LL++FQ+LMTNVSLLGHLCGILSGF+Y+YG FN LMPG+SF++ IES+S +S+ IR+PKF
Sbjct: 181 LLIVFQLLMTNVSLLGHLCGILSGFSYSYGLFNFLMPGSSFFTTIESASWMSSFIRRPKF 240

Query: 241 ILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTL 300
           I+CTGGNPS YIPTYS QNT+SSG  +GN W +LSSW+PQRE S+Q ++DSRFPGRGRTL
Sbjct: 241 IMCTGGNPSSYIPTYSAQNTTSSGFSTGNAWRSLSSWLPQREASNQSSEDSRFPGRGRTL 300

Query: 301 SSSQSPV----HVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAV---- 352
           S+++ P       D NL ARLL++SS  +R   +   T + ++D RQ  +  A  +    
Sbjct: 301 STARDPTAPAGETDPNLHARLLEDSSSPDR---LSDATVNTVADSRQAPIANAAVLPQSQ 357

Query: 353 DRVPAGQQ 360
            RV A ++
Sbjct: 358 GRVAASEE 365

Arabidopsis thaliana (taxid: 3702)
>sp|Q8BHC7|RHBL4_MOUSE Rhomboid-related protein 4 OS=Mus musculus GN=Rhbdd1 PE=1 SV=1 Back     alignment and function description
>sp|Q8TEB9|RHBL4_HUMAN Rhomboid-related protein 4 OS=Homo sapiens GN=RHBDD1 PE=1 SV=1 Back     alignment and function description
>sp|Q8RXW0|Y3761_ARATH Uncharacterized protein At3g17611 OS=Arabidopsis thaliana GN=At3g17611 PE=2 SV=1 Back     alignment and function description
>sp|Q4V8F3|RHBL4_RAT Rhomboid-related protein 4 OS=Rattus norvegicus GN=Rhbdd1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RBS4|RHBL4_PONAB Rhomboid-related protein 4 OS=Pongo abelii GN=RHBDD1 PE=2 SV=1 Back     alignment and function description
>sp|Q4I4A4|RBD2_GIBZE Rhomboid protein 2 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=RBD2 PE=3 SV=1 Back     alignment and function description
>sp|O74926|RBD2_SCHPO Rhomboid protein 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rbd2 PE=3 SV=2 Back     alignment and function description
>sp|Q6CDV6|RBD2_YARLI Rhomboid protein 2 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=RBD2 PE=3 SV=1 Back     alignment and function description
>sp|Q7S4V5|RBD2_NEUCR Rhomboid protein 2 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rbd-2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
224091513410 predicted protein [Populus trichocarpa] 0.947 0.880 0.716 1e-152
359481109406 PREDICTED: uncharacterized protein At3g5 0.944 0.886 0.723 1e-149
255581586397 Rhomboid protein, putative [Ricinus comm 0.931 0.894 0.728 1e-148
21593075403 unknown [Arabidopsis thaliana] 0.937 0.885 0.663 1e-144
356505467414 PREDICTED: uncharacterized protein At3g5 0.942 0.867 0.716 1e-143
18410961403 rhomboid-like protein 15 [Arabidopsis th 0.937 0.885 0.660 1e-143
297820678403 rhomboid family protein [Arabidopsis lyr 0.916 0.866 0.674 1e-143
227204337362 AT3G58460 [Arabidopsis thaliana] 0.939 0.988 0.660 1e-142
358348102403 hypothetical protein MTR_118s0012 [Medic 0.916 0.866 0.698 1e-140
356570925415 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.897 0.824 0.734 1e-139
>gi|224091513|ref|XP_002309277.1| predicted protein [Populus trichocarpa] gi|222855253|gb|EEE92800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 268/374 (71%), Positives = 304/374 (81%), Gaps = 13/374 (3%)

Query: 1   MRPNIVSEAGLSTRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVIS 60
           MRPNIV+EAGL TR  QWWESIPF TSAVV+VCG IYL+CLL GYDSFYEICFLP+AV+S
Sbjct: 1   MRPNIVTEAGLQTRVGQWWESIPFLTSAVVVVCGVIYLVCLLIGYDSFYEICFLPTAVVS 60

Query: 61  RFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAILHLL 120
            FQVYR YTSI FHGSLLHVLFNMLALVPLGSELERIMGS+R+ Y+ ILLAT+NAI HL 
Sbjct: 61  HFQVYRIYTSIFFHGSLLHVLFNMLALVPLGSELERIMGSIRLAYLIILLATTNAIFHLF 120

Query: 121 IALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLI 180
           IALLVAH PF+  Q ++DECAIGFSG++FS+IVIETSLSG QSRSVFGLFN+PAKWY  I
Sbjct: 121 IALLVAHNPFHPYQYLLDECAIGFSGILFSMIVIETSLSGVQSRSVFGLFNVPAKWYAFI 180

Query: 181 LLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKF 240
           LLV FQ+LMTNVSLLGHLCGILSGFAYTYG FN LMPG S +SAIE+SS LS+C+R+PKF
Sbjct: 181 LLVAFQLLMTNVSLLGHLCGILSGFAYTYGLFNFLMPGASSFSAIEASSWLSSCVRRPKF 240

Query: 241 ILCTGGNPSGYIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFPGRGRTL 300
           ILCTGG+P+ YIPT+SGQNT+SSGL SGNIW NLSSWMPQRETS+Q  QD RFPG GR L
Sbjct: 241 ILCTGGSPTSYIPTHSGQNTTSSGLLSGNIWRNLSSWMPQRETSAQAGQDYRFPGSGRAL 300

Query: 301 SSSQSP----VHVDSNLQARLLDNSSPENRSHMIVTETGDRLSDERQPALGTAVAV---- 352
            S QS     V+ DSNLQARLLDNS+P   SH+ VT T +   D R+  +  AV      
Sbjct: 301 GSGQSETVPAVNSDSNLQARLLDNSNPNRSSHLGVTATREPPLDGRRSVVDNAVGATPVH 360

Query: 353 -----DRVPAGQQV 361
                D  P+ +Q+
Sbjct: 361 PALHQDSAPSEEQI 374

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359481109|ref|XP_002267146.2| PREDICTED: uncharacterized protein At3g58460-like [Vitis vinifera] gi|296089310|emb|CBI39082.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255581586|ref|XP_002531598.1| Rhomboid protein, putative [Ricinus communis] gi|223528794|gb|EEF30801.1| Rhomboid protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|21593075|gb|AAM65024.1| unknown [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356505467|ref|XP_003521512.1| PREDICTED: uncharacterized protein At3g58460-like [Glycine max] Back     alignment and taxonomy information
>gi|18410961|ref|NP_567064.1| rhomboid-like protein 15 [Arabidopsis thaliana] gi|73921121|sp|Q8LB17.2|Y3846_ARATH RecName: Full=Uncharacterized protein At3g58460 gi|22531096|gb|AAM97052.1| putative protein [Arabidopsis thaliana] gi|23197956|gb|AAN15505.1| putative protein [Arabidopsis thaliana] gi|332646263|gb|AEE79784.1| rhomboid-like protein 15 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297820678|ref|XP_002878222.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] gi|297324060|gb|EFH54481.1| rhomboid family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|227204337|dbj|BAH57020.1| AT3G58460 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|358348102|ref|XP_003638088.1| hypothetical protein MTR_118s0012 [Medicago truncatula] gi|355504023|gb|AES85226.1| hypothetical protein MTR_118s0012 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356570925|ref|XP_003553633.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein At3g58460-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query381
DICTYBASE|DDB_G0281359343 DDB_G0281359 [Dictyostelium di 0.661 0.734 0.288 1.1e-21
TAIR|locus:2097473269 RBL13 "RHOMBOID-like protein 1 0.498 0.706 0.263 1.1e-12
TAIR|locus:1005716534334 RBL14 "RHOMBOID-like protein 1 0.404 0.461 0.308 9e-12
POMBASE|SPCC790.03251 SPCC790.03 "rhomboid family pr 0.477 0.725 0.233 2.2e-11
UNIPROTKB|E1BT32239 RHBDD1 "Uncharacterized protei 0.490 0.782 0.285 3.4e-11
UNIPROTKB|E2R6X6316 RHBDD1 "Uncharacterized protei 0.425 0.512 0.292 1.1e-08
UNIPROTKB|E2RD89316 RHBDD1 "Uncharacterized protei 0.425 0.512 0.292 1.1e-08
UNIPROTKB|Q8TEB9315 RHBDD1 "Rhomboid-related prote 0.433 0.523 0.267 2.3e-08
RGD|1306477316 Rhbdd1 "rhomboid domain contai 0.553 0.667 0.271 3e-08
UNIPROTKB|Q4V8F3316 Rhbdd1 "Rhomboid-related prote 0.553 0.667 0.271 3e-08
DICTYBASE|DDB_G0281359 DDB_G0281359 [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
 Score = 253 (94.1 bits), Expect = 1.1e-21, P = 1.1e-21
 Identities = 82/284 (28%), Positives = 136/284 (47%)

Query:    20 ESIPFFTSAVVIVCGTIYLICLLF-GYDSFYEICFLPSAVISRF--QVYRFYTSIVFHGS 76
             + IP  T  + I+C  ++ + L+       Y+ C    ++ + F   +YR   S   H S
Sbjct:    34 KKIPLATKVISIICSILFALSLVAPSMFGSYKTCLSIESLTNSFLDNLYRIILSNFAHLS 93

Query:    77 LLHVLFNMLALVPLGSELERI-MGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQN 135
             + H+++NM+  + L ++LER+  G+++ FY+  L                    F    N
Sbjct:    94 IYHIVYNMITFLDL-AKLERLTFGTLKYFYLLFLFGIITNLICLFIY-------FIGRNN 145

Query:   136 VMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFN---IPAKWYPLILLVLFQVLMTNV 192
             V   C +GFSGV+F+LI IE++ SG   R VF LFN   IP+K YP  +L+L  V +   
Sbjct:   146 V---CHLGFSGVLFALIYIESNSSG---RDVF-LFNAVKIPSKLYPWAMLILAHVFVPRS 198

Query:   193 SLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESSSLLSTCIRQPKF--ILCTGGNPSG 250
             S +GH  GI+ G  +  G+ ++ +      S IESS L++    +  +  I+  GG+   
Sbjct:   199 SFIGHFSGIVVGILFIKGYLDIFILSNQKLSEIESSQLMNIFTTKNSYFPIIKFGGSRR- 257

Query:   251 YIPTYSGQNTSSSGLFSGNIWSNLSSWMPQRETSSQPTQDSRFP 294
                +Y+    S  GLF      NL +  PQ++   Q  +  + P
Sbjct:   258 ---SYNTDRKSLDGLFFE--LKNLFN--PQQQQQRQQQRQQQQP 294
GO:0016021 "integral to membrane" evidence=IEA
GO:0004252 "serine-type endopeptidase activity" evidence=IEA
TAIR|locus:2097473 RBL13 "RHOMBOID-like protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1005716534 RBL14 "RHOMBOID-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
POMBASE|SPCC790.03 SPCC790.03 "rhomboid family protease" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|E1BT32 RHBDD1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2R6X6 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RD89 RHBDD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TEB9 RHBDD1 "Rhomboid-related protein 4" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1306477 Rhbdd1 "rhomboid domain containing 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q4V8F3 Rhbdd1 "Rhomboid-related protein 4" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8LB17Y3846_ARATHNo assigned EC number0.66030.93700.8858yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.210.691
3rd Layer3.4.21.105LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
pfam01694146 pfam01694, Rhomboid, Rhomboid family 2e-22
COG0705228 COG0705, COG0705, Membrane associated serine prote 3e-12
PRK10907276 PRK10907, PRK10907, intramembrane serine protease 7e-09
pfam04511192 pfam04511, DER1, Der1-like family 8e-08
TIGR04239271 TIGR04239, rhombo_GlpG, rhomboid family protease G 3e-07
>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family Back     alignment and domain information 
 Score = 91.9 bits (229), Expect = 2e-22
 Identities = 43/158 (27%), Positives = 69/158 (43%), Gaps = 19/158 (12%)

Query: 58  VISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGSVRMFYITILLATSNAIL 117
           ++ R Q++R  TS+  H   LH+LFNMLAL+  G  LERI+GSVR   + +L   + ++L
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 118 HLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSG---AQSRSVFGLFNIPA 174
             L +                  ++G SG IF L+     L         +  G   +  
Sbjct: 61  SYLFSPAS-------------SPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLL 107

Query: 175 KWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFF 212
               L LL+     +  +S   HL G+++G    +   
Sbjct: 108 GIILLNLLL---GFLPGISNFAHLGGLIAGLLLGFLLL 142

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146
>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182828 PRK10907, PRK10907, intramembrane serine protease GlpG; Provisional Back     alignment and domain information
>gnl|CDD|218120 pfam04511, DER1, Der1-like family Back     alignment and domain information
>gnl|CDD|234518 TIGR04239, rhombo_GlpG, rhomboid family protease GlpG Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 381
KOG2632258 consensus Rhomboid family proteins [Function unkno 99.96
KOG0858239 consensus Predicted membrane protein [Function unk 99.95
PF04511197 DER1: Der1-like family; InterPro: IPR007599 The en 99.91
PRK10907276 intramembrane serine protease GlpG; Provisional 99.88
COG5291313 Predicted membrane protein [Function unknown] 99.88
PTZ00101278 rhomboid-1 protease; Provisional 99.88
COG0705228 Membrane associated serine protease [Amino acid tr 99.83
PF01694145 Rhomboid: Rhomboid family; InterPro: IPR022764 In 99.77
KOG2289316 consensus Rhomboid family proteins [Signal transdu 99.6
KOG2290652 consensus Rhomboid family proteins [Signal transdu 99.15
KOG2890326 consensus Predicted membrane protein [Function unk 98.93
KOG4463323 consensus Uncharacterized conserved protein [Funct 98.89
PF0855199 DUF1751: Eukaryotic integral membrane protein (DUF 98.86
KOG2980310 consensus Integral membrane protease of the rhombo 98.32
>KOG2632 consensus Rhomboid family proteins [Function unknown] Back     alignment and domain information 
Probab=99.96  E-value=2.5e-29  Score=229.86  Aligned_cols=207  Identities=44%  Similarity=0.727  Sum_probs=186.2

Q ss_pred             hHHHHHhccchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHH
Q 016890           13 TRANQWWESIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGS   92 (381)
Q Consensus        13 ~~~~~~~~~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~   92 (381)
                      .+..++|..+|.+|..++.+|.+++++.....   ..+.+..|...+.+.|+||++||.++|.+..|++|||+.++..+.
T Consensus         5 g~~~~~~~~~p~~ts~~~~~~~~i~lv~~~~~---i~~~~~l~~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~   81 (258)
T KOG2632|consen    5 GRVGQFWMKIPLLTSIVVVLAILIYLVSFFPG---IVEVLGLPSELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGS   81 (258)
T ss_pred             ccCccccccchHHHHHHHHHHHHHHHHhccch---hhhHhcCCHHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchh
Confidence            35567889999999999999999999887743   337778888888999999999999999999999999999999999


Q ss_pred             HHHHhhC-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeecc
Q 016890           93 ELERIMG-SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFN  171 (381)
Q Consensus        93 ~LE~~~G-s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~  171 (381)
                      .+|+.+| +.+++.+..+.+++.+++++++.....     ...+..+.+++|.|++.|+++...+...|.+++++|+.+.
T Consensus        82 ~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~-----~~d~~~~~~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~s  156 (258)
T KOG2632|consen   82 QFERTHGTTVRILMFTVLLALFSGILYLLAYHVFL-----LSDLVYVEGAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFS  156 (258)
T ss_pred             HHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHh-----hcchhhhcccccccHHHHHHHHHHhhcCcccchhhccccc
Confidence            9999999 999999999999999999998875332     2334457789999999999999989999998889999999


Q ss_pred             chhhHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHhhhcccCCCchhhhhhhcc
Q 016890          172 IPAKWYPLILLVLFQVLMTNVSLLGHLCGILSGFAYTYGFFNLLMPGTSFYSAIESS  228 (381)
Q Consensus       172 Ip~~~~p~~ll~~~~ll~~~~s~~~hL~Gil~G~ly~~~~l~~~~p~~~~~~~ie~~  228 (381)
                      ||+++.||+.+++++++.|+.++++|+||+++|+.|.++.+ ++.|..+.++.+|..
T Consensus       157 iP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~~f-~lip~~~~~~~v~~~  212 (258)
T KOG2632|consen  157 IPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFSSF-GLIPGIRNYRAVTEA  212 (258)
T ss_pred             ccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHhh-ccCCcchhHHHhhhh
Confidence            99999999999999999999999999999999999999988 899999999999763

>KOG0858 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins Back     alignment and domain information
>PRK10907 intramembrane serine protease GlpG; Provisional Back     alignment and domain information
>COG5291 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PTZ00101 rhomboid-1 protease; Provisional Back     alignment and domain information
>COG0705 Membrane associated serine protease [Amino acid transport and metabolism] Back     alignment and domain information
>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG2890 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG4463 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins Back     alignment and domain information
>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
2irv_A182 Crystal Structure Of Glpg, A Rhomboid Intramembrane 2e-05
2xov_A181 Crystal Structure Of E.Coli Rhomboid Protease Glpg, 2e-05
2ic8_A182 Crystal Structure Of Glpg Length = 182 2e-05
3b45_A180 Crystal Structure Of Glpg At 1.9a Resolution Length 2e-05
2o7l_A180 The Open-Cap Conformation Of Glpg Length = 180 2e-05
2xow_A179 Structure Of Glpg In Complex With A Mechanism-Based 3e-05
2xtu_A181 Structure Of E.Coli Rhomboid Protease Glpg Active S 4e-05
2xtv_A180 Structure Of E.Coli Rhomboid Protease Glpg, Active 4e-05
3b44_A180 Crystal Structure Of Glpg W136a Mutant Length = 180 1e-04
>pdb|2IRV|A Chain A, Crystal Structure Of Glpg, A Rhomboid Intramembrane Serine Protease Length = 182 Back     alignment and structure 
Iteration: 1

 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 32/193 (16%)
Query: 26  TSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNML 85
           T  ++I C  +++   + G          P     +F+ +R++T  + H SL+H+LFN+L
Sbjct: 6   TWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLL 65
Query: 86  ALVPLGSELERIMGSVRMFYITILLATSNXXXXXXXXXXXXXXPFYRLQNVMDECAIGFS 145
               LG  +E+ +GS ++  IT++ A  +                Y  Q        G S
Sbjct: 66  WWWYLGGAVEKRLGSGKLIVITLISALLSG---------------YVQQKFSGPWFGGLS 110
Query: 146 GVIFSLIVI---------ETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLG 196
           GV+++L+           ++ +   +   +F L  I A W+      LF + M N +   
Sbjct: 111 GVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFD-----LFGMSMANGA--- 162
Query: 197 HLCGILSGFAYTY 209
           H+ G+  G A  +
Sbjct: 163 HIAGLAVGLAMAF 175
>pdb|2XOV|A Chain A, Crystal Structure Of E.Coli Rhomboid Protease Glpg, Native Enzyme Length = 181 Back     alignment and structure
>pdb|2IC8|A Chain A, Crystal Structure Of Glpg Length = 182 Back     alignment and structure
>pdb|3B45|A Chain A, Crystal Structure Of Glpg At 1.9a Resolution Length = 180 Back     alignment and structure
>pdb|2O7L|A Chain A, The Open-Cap Conformation Of Glpg Length = 180 Back     alignment and structure
>pdb|2XOW|A Chain A, Structure Of Glpg In Complex With A Mechanism-Based Isocoumarin Inhibitor Length = 179 Back     alignment and structure
>pdb|2XTU|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg Active Site Mutant, S201t In Trigonal Crystal Form Length = 181 Back     alignment and structure
>pdb|2XTV|A Chain A, Structure Of E.Coli Rhomboid Protease Glpg, Active Site Mutant, S201t, Orthorhombic Crystal Form Length = 180 Back     alignment and structure
>pdb|3B44|A Chain A, Crystal Structure Of Glpg W136a Mutant Length = 180 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query381
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 2e-21
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 2e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196 Back     alignment and structure
 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 34/192 (17%), Positives = 72/192 (37%), Gaps = 20/192 (10%)

Query: 23  PFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLF 82
              T  +  +C  IY+   L   D    +   P+      +V+R+ +  + H S LH+LF
Sbjct: 9   GKITLILTALCVLIYIAQQLGFEDDIMYLMHYPAYEEQDSEVWRYISHTLVHLSNLHILF 68

Query: 83  NMLALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAI 142
           N+      G  +ER  GSV++  + ++ +     +   ++                    
Sbjct: 69  NLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVS---------------GPAFF 113

Query: 143 GFSGVIFSLI---VIETSLSGAQSRSVFGLFNIPAKWYPLILLVLFQVLMTNVSLLGHLC 199
           G SGV+++++    I   L+        G F +      + L  +  +    +    H+ 
Sbjct: 114 GLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVG--IALGFISPLFGVEMGNAAHIS 171

Query: 200 GILSGFAYTYGF 211
           G++ G  + +  
Sbjct: 172 GLIVGLIWGFID 183
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
2xov_A181 Rhomboid protease GLPG; membrane protein, hydrolas 99.92
2nr9_A196 Protein GLPG homolog; intramembrane peptidase, rho 99.9
>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Back     alignment and structure
Probab=99.92  E-value=8.1e-24  Score=188.43  Aligned_cols=172  Identities=19%  Similarity=0.312  Sum_probs=129.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccc-cchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhC
Q 016890           21 SIPFFTSAVVIVCGTIYLICLLFGYDS-FYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMG   99 (381)
Q Consensus        21 ~~P~vTr~ll~~~v~v~ll~~~~~~~~-~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~G   99 (381)
                      +.||+|+.++++|+++|++..+.+... ...+.+.|.. ..++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|
T Consensus         2 ~~~pvt~~li~~~v~vf~~~~~~~~~~~~~~~~~~p~~-~~~~~~wrl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G   80 (181)
T 2xov_A            2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDP-TLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLG   80 (181)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSG-GGTTCTTHHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHhhcCChhh-ccCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            458899999999999999987743221 3445566653 46799999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHH---hhcCCceeeeeeeccchhhH
Q 016890          100 SVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIET---SLSGAQSRSVFGLFNIPAKW  176 (381)
Q Consensus       100 s~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~---~~~p~~~~~ifg~~~Ip~~~  176 (381)
                      +.|++.+|+++++.+++.+.++.               ....+|+||++++++++..   ...|+.+..    ++.+...
T Consensus        81 ~~~fl~~yl~~~i~~~l~~~~~~---------------~~~~vGaSGai~gl~g~~~~~~~~~p~~~~~----l~~~~~~  141 (181)
T 2xov_A           81 SGKLIVITLISALLSGYVQQKFS---------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIY----LQRGLII  141 (181)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCC----CCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhc---------------CCCceeHHHHHHHHHHHHHHHHhhCcCceee----eHHHHHH
Confidence            99999999999999999876542               1237899999999997553   345544321    1233322


Q ss_pred             HHHHHHHHHHHhh---cchhHHHHHHHHHHHHHHHHhhhc
Q 016890          177 YPLILLVLFQVLM---TNVSLLGHLCGILSGFAYTYGFFN  213 (381)
Q Consensus       177 ~p~~ll~~~~ll~---~~~s~~~hL~Gil~G~ly~~~~l~  213 (381)
                      +.. ..++..+..   +++++.+|++|+++|+++++.+.|
T Consensus       142 ~~~-~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          142 FAL-IWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HHH-HHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHH-HHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence            211 112233332   589999999999999999885443
>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 381
d3b45a1180 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 4e-14
d2nr9a1189 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu 2e-12
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 67.8 bits (165), Expect = 4e-14
 Identities = 37/186 (19%), Positives = 76/186 (40%), Gaps = 16/186 (8%)

Query: 25  FTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNM 84
            T  ++I C  +++   + G          P     +F+ +R++T  + H SL+H+LFN+
Sbjct: 6   VTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNL 65

Query: 85  LALVPLGSELERIMGSVRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGF 144
           L    LG  +E+ +GS ++  IT++ A  +  +                         G 
Sbjct: 66  LWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQK---------------FSGPWFGGL 110

Query: 145 SGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPL-ILLVLFQVLMTNVSLLGHLCGILS 203
           SGV+++L+           +S   L      +  + I+   F +   +++   H+ G+  
Sbjct: 111 SGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAV 170

Query: 204 GFAYTY 209
           G A  +
Sbjct: 171 GLAMAF 176
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query381
d3b45a1180 GlpG {Escherichia coli [TaxId: 562]} 99.91
d2nr9a1189 GlpG homolog HI0618 {Haemophilus influenzae [TaxId 99.91
>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=2.2e-24  Score=189.63  Aligned_cols=173  Identities=22%  Similarity=0.347  Sum_probs=130.1

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHhcccccchheecchhhhcCCccchhchhhhccccHHHHHHHHHHHHHHHHHHHHhhCh
Q 016890           21 SIPFFTSAVVIVCGTIYLICLLFGYDSFYEICFLPSAVISRFQVYRFYTSIVFHGSLLHVLFNMLALVPLGSELERIMGS  100 (381)
Q Consensus        21 ~~P~vTr~ll~~~v~v~ll~~~~~~~~~~~~~~~p~~i~~~~q~WRL~Ts~f~H~~~~hllfN~~~L~~~g~~LE~~~Gs  100 (381)
                      +.+|+|..++++|+++|++..+.+.....+....+.....++|+||++|+.|+|.++.|+++||+.++.+|+.+|+.+|+
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~~~~~~~~~~~~~~~~~g~~wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~   81 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGDQEVMLWLAWPFDPTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGS   81 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHSSCCSGGGTTCGGGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCcHHHHHHHcCCCcccccCchHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccc
Confidence            56889999999999999987765434444444445555678999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHhhcCCceeeeeeeccchhhHHHHH
Q 016890          101 VRMFYITILLATSNAILHLLIALLVAHIPFYRLQNVMDECAIGFSGVIFSLIVIETSLSGAQSRSVFGLFNIPAKWYPLI  180 (381)
Q Consensus       101 ~~~l~l~ll~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~iG~Sg~ifall~~~~~~~p~~~~~ifg~~~Ip~~~~p~~  180 (381)
                      +|++.+|++++++++++.+++.               +....|+||++++++.......+.++...+.. ........++
T Consensus        82 ~~~~~~~~~~~~~g~l~~~~~~---------------~~~~~G~sg~i~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  145 (180)
T d3b45a1          82 GKLIVITLISALLSGYVQQKFS---------------GPWFGGLSGVVYALMGYVWLRGERDPQSGIYL-QRGLIIFALI  145 (180)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---------------CSCCCCSHHHHHHHHHHHHHHHHHCGGGSCCC-CHHHHHHHHH
T ss_pred             hhheeeeeHHHHHHHHHHHHHh---------------ccccccccchHHHHHHHHHHHhhhcchhHHhh-HHHHHHHHHH
Confidence            9999999999999999876652               34678999999999876665544333222211 1111111111


Q ss_pred             --HHHHHHHhhcchhHHHHHHHHHHHHHHHH
Q 016890          181 --LLVLFQVLMTNVSLLGHLCGILSGFAYTY  209 (381)
Q Consensus       181 --ll~~~~ll~~~~s~~~hL~Gil~G~ly~~  209 (381)
                        .........+++++.+|++|+++|+++++
T Consensus       146 ~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~  176 (180)
T d3b45a1         146 WIVAGWFDLFGMSMANGAHIAGLAVGLAMAF  176 (180)
T ss_dssp             HHHHHHTTSSCCSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence              11112223467899999999999999988
>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure