Citrus Sinensis ID: 016921
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | 2.2.26 [Sep-21-2011] | |||||||
| Q6ZIK0 | 362 | Probable tocopherol O-met | yes | no | 0.75 | 0.787 | 0.764 | 1e-132 | |
| Q9ZSK1 | 348 | Tocopherol O-methyltransf | yes | no | 0.75 | 0.818 | 0.736 | 1e-127 | |
| Q8KZ94 | 283 | Demethylrebeccamycin-D-gl | N/A | no | 0.478 | 0.643 | 0.367 | 2e-26 | |
| Q9KJ20 | 565 | Glycine/sarcosine/dimethy | N/A | no | 0.597 | 0.401 | 0.270 | 4e-20 | |
| Q9P3R1 | 379 | Sterol 24-C-methyltransfe | N/A | no | 0.610 | 0.612 | 0.253 | 2e-18 | |
| Q96WX4 | 377 | Sterol 24-C-methyltransfe | N/A | no | 0.607 | 0.612 | 0.273 | 7e-18 | |
| Q6C2D9 | 381 | Sterol 24-C-methyltransfe | yes | no | 0.634 | 0.632 | 0.267 | 1e-16 | |
| O14321 | 378 | Sterol 24-C-methyltransfe | yes | no | 0.568 | 0.571 | 0.270 | 1e-16 | |
| Q54I98 | 354 | Probable cycloartenol-C-2 | no | no | 0.615 | 0.661 | 0.26 | 3e-16 | |
| Q9KJ21 | 279 | Sarcosine/dimethylglycine | N/A | no | 0.55 | 0.749 | 0.288 | 4e-16 |
| >sp|Q6ZIK0|GTOMC_ORYSJ Probable tocopherol O-methyltransferase, chloroplastic OS=Oryza sativa subsp. japonica GN=VTE4 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 471 bits (1211), Expect = e-132, Method: Compositional matrix adjust.
Identities = 218/285 (76%), Positives = 247/285 (86%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIA YDESS +WE IWG+HMHHGFY+ + S+SDHR AQ+RMIEE+L FA V +D
Sbjct: 74 LKEGIAGLYDESSGVWESIWGEHMHHGFYDAGEAASMSDHRRAQIRMIEESLAFAAVPDD 133
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K+PK+VVDVGCGIGGSSRYLA K+GA+C GITLSPVQA+R NALAA +GL+DKVSFQV
Sbjct: 134 AEKKPKSVVDVGCGIGGSSRYLANKYGAQCYGITLSPVQAERGNALAAEQGLSDKVSFQV 193
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GDAL+QPFPDGQFDLVWSMESGEHMPDK +FVSELARV AP IIIVTWCHR+L PSEE
Sbjct: 194 GDALEQPFPDGQFDLVWSMESGEHMPDKRQFVSELARVAAPGARIIIVTWCHRNLEPSEE 253
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P E LLK+ICDAYYLP WCS +DYVK+ +SLSLEDI+ DWS+NVAPFWPAVI SA
Sbjct: 254 SLKPDELNLLKRICDAYYLPDWCSPSDYVKIAESLSLEDIRTADWSENVAPFWPAVIKSA 313
Query: 335 LTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
LTWKG TSLLR+G KTI+GA+ MPLMIEGY+K LIKF IITCRKP
Sbjct: 314 LTWKGLTSLLRSGWKTIRGAMVMPLMIEGYKKGLIKFTIITCRKP 358
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Oryza sativa subsp. japonica (taxid: 39947) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q9ZSK1|GTOMC_ARATH Tocopherol O-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=VTE4 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 212/288 (73%), Positives = 246/288 (85%), Gaps = 3/288 (1%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS 152
L++GIAEFY+E+S LWE+IWGDHMHHGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+
Sbjct: 60 LRKGIAEFYNETSGLWEEIWGDHMHHGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVT 119
Query: 153 EDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
++ ++ VVDVGCGIGGSSRYLA KFGA+C GITLSPVQA+RAN LAAA+ LA K S
Sbjct: 120 DEEEEKKIKKVVDVGCGIGGSSRYLASKFGAECIGITLSPVQAKRANDLAAAQSLAHKAS 179
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
FQV DAL QPF DG+FDLVWSMESGEHMPDK+KFV EL RV AP G IIIVTWCHR+L+
Sbjct: 180 FQVADALDQPFEDGKFDLVWSMESGEHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSA 239
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
EE+LQPWEQ +L KIC +YLPAWCST DYV LLQS SL+DIK DWS+NVAPFWPAVI
Sbjct: 240 GEEALQPWEQNILDKICKTFYLPAWCSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVI 299
Query: 332 HSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
+ALTWKG SLLR+G+K+IKGAL MPLMIEGY+K +IKF IITC+KP
Sbjct: 300 RTALTWKGLVSLLRSGMKSIKGALTMPLMIEGYKKGVIKFGIITCQKP 347
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Involved in the synthesis of tocopherol (vitamin E). Methylates gamma- and delta-tocopherol to form beta- and alpha-tocopherol, respectively. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q8KZ94|REBMT_NOCAE Demethylrebeccamycin-D-glucose O-methyltransferase OS=Lechevalieria aerocolonigenes GN=rebM PE=1 SV=1 | Back alignment and function description |
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Score = 120 bits (301), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 106/193 (54%), Gaps = 11/193 (5%)
Query: 82 TSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYE-PDSSVSVSDHRAAQVR 140
T + + A A E + + YD+ + + IWG+++H G++E + VSV D A R
Sbjct: 2 TESKSEGTAVAAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADVSVDD---ATDR 58
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
+ +E + V + V+DVGCGIG + LA + GI++S Q +ANA
Sbjct: 59 LTDEMIALLDV-----RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANAR 113
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A GLA++V+F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+
Sbjct: 114 ATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVA 173
Query: 261 IVTWCHRDLAPSE 273
I + LAP E
Sbjct: 174 IADFVL--LAPVE 184
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Glycosyl O-methyltransferase that catalyzes the final step in the biosynthesis of rebeccamycin, an indolocarbazole alkaloid that inhibits topoisomerase 1. Has broad substrate specificity and functions as glycosyl O-methyltransferase on a number of rebeccamycin analogs. Lechevalieria aerocolonigenes (taxid: 68170) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9KJ20|GSDMT_ACTHA Glycine/sarcosine/dimethylglycine N-methyltransferase OS=Actinopolyspora halophila PE=1 SV=1 | Back alignment and function description |
|---|
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 70/259 (27%), Positives = 119/259 (45%), Gaps = 32/259 (12%)
Query: 104 DESSSLWEDIWG-DHMHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDPTKRPK 160
+++ + + +WG + +H G Y+ P ++ + R Q R AG V P R
Sbjct: 308 EDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISPETR-- 357
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+G G GG++RYLA+ +G + LS V+ QR + A GL + G
Sbjct: 358 -ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDGSFEDL 416
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 417 PYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE------ 470
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH-------- 332
L I D +L + S Y K L L L++I+ ED S+ + + V+
Sbjct: 471 ---LGPILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSEYLPVHYGRVLEVLESRENE 527
Query: 333 -SALTWKGFTSLLRTGLKT 350
+ + + + ++TGL+
Sbjct: 528 LAGFIGEEYRAHMKTGLRN 546
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Catalyzes the methylation of glycine, sarcosine and dimethylglycine to sarcosine, dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. Actinopolyspora halophila (taxid: 1850) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
| >sp|Q9P3R1|ERG6_NEUCR Sterol 24-C-methyltransferase erg-4 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=erg-4 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/260 (25%), Positives = 116/260 (44%), Gaps = 28/260 (10%)
Query: 79 SSTTSTTTMSDAAAR--ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDH 134
+ T T +D AR E +Y+ ++ ++E WG H Y P S +++ H
Sbjct: 57 NKTAEAETQADREARTKEYATLTRHYYNLATDIYEYGWGQCFHFCRYSPGESFYQAIARH 116
Query: 135 R---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
AAQ+ + K+ V+DVGCG+GG +R +AK A G+ +
Sbjct: 117 EHYLAAQIGI---------------KKDMKVLDVGCGVGGPAREIAKFTDAHITGLNNND 161
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
Q RA A GL+ ++ F GD +Q FPD FD V+++E+ H P E+ R
Sbjct: 162 YQIDRATHYAVRDGLSGQLKFVKGDFMQMSFPDNSFDAVYAIEATVHAPKLEGVYGEIYR 221
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
V P GT + W D ++++ + L ++ + + + ++ + ++++
Sbjct: 222 VLKPGGTFGVYEWLMTD-NYDNDNVEHRDIRLAIEVGNG--ISNMVTISEGLAAMKNVGF 278
Query: 312 EDIKAEDWSQNVAP---FWP 328
E + ED + P +WP
Sbjct: 279 ELVHHEDLADRNDPMPWYWP 298
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q96WX4|ERG6_PNECA Sterol 24-C-methyltransferase OS=Pneumocystis carinii GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 110/249 (44%), Gaps = 18/249 (7%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
+Y+ + +E W H + D S S + R + AG+ E T
Sbjct: 80 YYNLVTDFYEYGWSTSFHFCRFAKDESFSQAIARHEHYIALH-----AGIREGET----- 129
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG + ++ GA G+ + Q QRA + +GL+DK+ F GD +Q P
Sbjct: 130 VLDVGCGVGGPACQISVFTGANIVGLNNNDYQIQRAKYYSEKKGLSDKLKFIKGDFMQMP 189
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FP+ FD ++S+E+ H P SE+ RV P G W L +E+ P Q
Sbjct: 190 FPENSFDKIYSIEATIHAPSLEGVYSEIYRVLKPGGLYASYEWVM--LNKYDEN-DPEHQ 246
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF-WPAVIHSAL----T 336
+++ I +P + L + E I +E+ S +P W + L +
Sbjct: 247 QIVYGIEIGDSIPKISKIGEAEAALIKVGFEIIHSEELSTKNSPLPWYYYLDGDLRKVRS 306
Query: 337 WKGFTSLLR 345
++ F S+ R
Sbjct: 307 FRDFISIAR 315
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Pneumocystis carinii (taxid: 4754) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q6C2D9|ERG6_YARLI Sterol 24-C-methyltransferase OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ERG6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 71/265 (26%), Positives = 114/265 (43%), Gaps = 24/265 (9%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
+Y+ + +E WG H Y + R A R G+ P +
Sbjct: 82 YYNLVTDFYEYGWGSSFHFSRYYKGEAF-----RQATARHEHYLAYKMGIQ--PGMK--- 131
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+DVGCG+GG +R +A+ GA G+ + Q +R + +G D+V++ GD +Q
Sbjct: 132 VLDVGCGVGGPAREIARFTGANIVGLNNNDYQVERGTHYSEVQGFGDQVTYVKGDFMQMD 191
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD V+++E+ H P SE+ RV P G + W D +ES P +
Sbjct: 192 FPDNSFDAVYAIEATVHAPVLEGVYSEIFRVLKPGGVFGVYEWVMTD--EYDES-NPEHR 248
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSL-----EDIKAED----WSQNVAPFWPAV-- 330
++ I +P VK L+++ ED+ A+D W +A W V
Sbjct: 249 DICYGIEKGDGIPKMYKREVAVKALENVGFDIEYQEDLAADDAEVPWYYPLAGEWKYVQS 308
Query: 331 IHSALTWKGFTSLLRTGLKTIKGAL 355
++ +T + L R + GAL
Sbjct: 309 LNDIVTIGRTSRLGRMVTMNVIGAL 333
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|O14321|ERG6_SCHPO Sterol 24-C-methyltransferase erg6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=erg6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 103/237 (43%), Gaps = 21/237 (8%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHG-FYEPDS---SVSVSDHRAAQVRMIEETLRFAGV 151
K + +YD ++ L+E W H FY+ ++ S++ +H A RM G+
Sbjct: 72 KSVVNSYYDLATDLYEYGWSQSFHFSRFYKGEAFAQSIARHEHYLA-YRM--------GI 122
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
P R V+DVGCG+GG +R + + G G+ + Q R N A R L K
Sbjct: 123 K--PGSR---VLDVGCGVGGPAREITEFTGCNLVGLNNNDYQISRCNNYAVKRNLDKKQV 177
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F GD + PF D FD V+++E+ H P E+ RV P G + W D
Sbjct: 178 FVKGDFMHMPFEDNTFDYVYAIEATVHAPSLEGVYGEIFRVLKPGGVFGVYEWVMSD--- 234
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
+S P +E+ I +P D V+ ++ + ++ +D + + P P
Sbjct: 235 DYDSSIPKHREIAYNIEVGDGIPQMVRKCDAVEAIKKVGFNLLEEDDLTDHDNPDLP 291
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of zymosterol to form fecosterol. Involved in the biosynthesis or ergosterol which is important for plasma membrane structure and function and for localization of plasma membrane proteins. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q54I98|SMT1_DICDI Probable cycloartenol-C-24-methyltransferase 1 OS=Dictyostelium discoideum GN=smt1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 103/250 (41%), Gaps = 16/250 (6%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158
+ FYD ++ +E WG H S S R ++ M + F G+
Sbjct: 62 VNTFYDLATDFYEFGWGQSFHFATRHKYESFEASIARH-EMYMAHQLGLFPGMK------ 114
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
V+D+GCG+GG R +A+ GA G+ + Q QR L + GL+ SF D +
Sbjct: 115 ---VIDIGCGVGGPMRTIARFSGANVVGLNNNEYQIQRGKRLNESAGLSHLCSFIKADFM 171
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278
P D +D + +E+ H PD E+ R+ P G W + E+ P
Sbjct: 172 HVPVEDNTYDCAYQIEATCHAPDLVGLYKEVFRIVKPGGLFGGYEWIMTNKFNPED---P 228
Query: 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWK 338
E + K+I LP A+ + ++ E I A D ++ W + S ++
Sbjct: 229 VEVNIKKQIELGNGLPDLVKPAEIINAAKAAGFEVITAFDVAETSELPWYLPLSSGVSIT 288
Query: 339 GFTSLLRTGL 348
GF L TG+
Sbjct: 289 GF---LHTGV 295
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Catalyzes the methyl transfer from S-adenosyl-methionine to the C-24 of cycloartenol to form 24-methylene cycloartenol. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 1 |
| >sp|Q9KJ21|SDMT_ECTHL Sarcosine/dimethylglycine N-methyltransferase OS=Ectothiorhodospira halochloris PE=1 SV=1 | Back alignment and function description |
|---|
Score = 85.9 bits (211), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 102/229 (44%), Gaps = 20/229 (8%)
Query: 104 DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNV 162
+++ + + IWG + +H G Y D R RM + + S V
Sbjct: 20 EDADNFYAIIWGGEDIHIGLYNDDEEPIADASRRTVERMSSLSRQLGPDS--------YV 71
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P 221
+D+G G GGS+RYLA K+G K + LS + +R + +G+ D + V A + P
Sbjct: 72 LDMGAGYGGSARYLAHKYGCKVAALNLSERENERDRQMNKEQGV-DHLIEVVDAAFEDVP 130
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ DG FDLVWS +S H PD+ + + E +RV G I D P E +QP
Sbjct: 131 YDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP-EGVIQP--- 186
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
I D +L + Y + L+ L E+I ED + + + V
Sbjct: 187 -----ILDRIHLETMGTPNFYRQTLRDLGFEEITFEDHTHQLPRHYGRV 230
|
Catalyzes the methylation of sarcosine and dimethylglycine to dimethylglycine and betaine, respectively, with S-adenosylmethionine (AdoMet) acting as the methyl donor. It has strict specificity for sarcosine and dimethylglycine as the methyl group acceptors. Ectothiorhodospira halochloris (taxid: 1052) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 5 EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | ||||||
| 91694293 | 344 | gamma-tocopherol methyltransferase [Goss | 0.784 | 0.866 | 0.787 | 1e-144 | |
| 66732623 | 358 | gamma-tocopherol methyltransferase [Lotu | 0.886 | 0.941 | 0.712 | 1e-142 | |
| 350538087 | 362 | gamma-tocopherol methyltransferase [Sola | 0.789 | 0.828 | 0.776 | 1e-140 | |
| 224126185 | 293 | predicted protein [Populus trichocarpa] | 0.757 | 0.982 | 0.813 | 1e-139 | |
| 359807465 | 302 | tocopherol O-methyltransferase, chloropl | 0.755 | 0.950 | 0.809 | 1e-139 | |
| 91694287 | 368 | gamma-tocopherol methyltransferase [Sola | 0.826 | 0.853 | 0.723 | 1e-139 | |
| 325516264 | 361 | gamma-tocopherol methyltransferase [Sola | 0.786 | 0.828 | 0.775 | 1e-139 | |
| 318068176 | 368 | gamma-tocopherol methyltransferase [Sola | 0.826 | 0.853 | 0.734 | 1e-139 | |
| 342330690 | 302 | gamma-tocopherol methyltransferase [Glyc | 0.755 | 0.950 | 0.805 | 1e-139 | |
| 347326940 | 362 | gamma tocopherol methyl transferase [Sol | 0.789 | 0.828 | 0.773 | 1e-138 |
| >gi|91694293|gb|ABE41798.1| gamma-tocopherol methyltransferase [Gossypium hirsutum] | Back alignment and taxonomy information |
|---|
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 241/306 (78%), Positives = 270/306 (88%), Gaps = 8/306 (2%)
Query: 75 ITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDH 134
+ A+S+ STTT L+EGIAEFYD+SS +WEDIWGDHMHHG+Y+PDS+VS SDH
Sbjct: 47 VKAAASSLSTTT--------LQEGIAEFYDQSSGIWEDIWGDHMHHGYYDPDSNVSGSDH 98
Query: 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQA 194
AAQ+RMIEE+LRFAG++EDP +PK +VDVGCGIGGSSRYLA+K+GAKCQGITLSPVQA
Sbjct: 99 PAAQIRMIEESLRFAGITEDPANKPKTIVDVGCGIGGSSRYLARKYGAKCQGITLSPVQA 158
Query: 195 QRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTA 254
RANALA +GLADKVSFQV DAL QPFPD QFDLVWSMESGEHMPDK KFV ELARV A
Sbjct: 159 GRANALAKDQGLADKVSFQVADALNQPFPDDQFDLVWSMESGEHMPDKPKFVKELARVAA 218
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
P GTIIIVTWCHRDL PSEE LQPWE++LL +IC+AYYLP WCST+DYVKLLQSLSL+DI
Sbjct: 219 PGGTIIIVTWCHRDLGPSEEDLQPWEKKLLNRICNAYYLPEWCSTSDYVKLLQSLSLQDI 278
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAII 374
KA DW++NVAPFWPAVI SALTWKGFTSLLR+GLKTIKGAL MPLMI+GYQK +IKFAII
Sbjct: 279 KAADWTENVAPFWPAVIRSALTWKGFTSLLRSGLKTIKGALVMPLMIQGYQKGVIKFAII 338
Query: 375 TCRKPR 380
TCRKP
Sbjct: 339 TCRKPE 344
|
Source: Gossypium hirsutum Species: Gossypium hirsutum Genus: Gossypium Family: Malvaceae Order: Malvales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|66732623|gb|AAY52459.1| gamma-tocopherol methyltransferase [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1316), Expect = e-142, Method: Compositional matrix adjust.
Identities = 250/351 (71%), Positives = 280/351 (79%), Gaps = 14/351 (3%)
Query: 43 ACLRPSLLPAPPPAP----------TWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAA 92
A + S+ P PP T R + FS + TR S T + A
Sbjct: 2 ATMMMSIFPPPPSVASLFILSHCTHTIRVQSTTQFTGFSIRTRTRDCSRILLTEEREMAV 61
Query: 93 RE----LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
E L+ GIAEFYDESS LWED+WGDHMHHGFYE D +VSVSDHR AQ+RMIEE+LRF
Sbjct: 62 MEEKKLLQTGIAEFYDESSGLWEDMWGDHMHHGFYEQDVTVSVSDHRVAQIRMIEESLRF 121
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
A +SEDP K+P+++VDVGCGIGGSSRYLAKKF AK GITLSPVQAQRANALAA++GLAD
Sbjct: 122 AALSEDPAKKPESIVDVGCGIGGSSRYLAKKFQAKSVGITLSPVQAQRANALAASQGLAD 181
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
KVSFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP GTIIIVTWCHRD
Sbjct: 182 KVSFQVADALEQPFPDGQFDLVWSMESGEHMPDKPKFVGELARVAAPGGTIIIVTWCHRD 241
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
L P+EESLQPWEQ LLK+ICDA+YLPAWCSTADYVKLL+S SL+DIK+ DWS VAPFWP
Sbjct: 242 LGPAEESLQPWEQNLLKRICDAFYLPAWCSTADYVKLLESHSLQDIKSADWSPFVAPFWP 301
Query: 329 AVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
AVI SA TWKG TSLLR+G+KTIKGALAMPLMIEG++K +IKFAI+TCRKP
Sbjct: 302 AVIRSAFTWKGLTSLLRSGMKTIKGALAMPLMIEGFKKGVIKFAIVTCRKP 352
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|350538087|ref|NP_001233814.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] gi|91694285|gb|ABE41794.1| gamma-tocopherol methyltransferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust.
Identities = 233/300 (77%), Positives = 263/300 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 63 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 122
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 123 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 182
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 183 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 242
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYVKLLQS SL+DIKAEDWS
Sbjct: 243 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWS 302
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
+NVAPFWPAVI SALTWKGFTS+LR+G KTIK ALAMPLMIEGY+K LIKFAIITCRKP
Sbjct: 303 ENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKPE 362
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224126185|ref|XP_002319777.1| predicted protein [Populus trichocarpa] gi|222858153|gb|EEE95700.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 236/290 (81%), Positives = 254/290 (87%), Gaps = 2/290 (0%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVS--DHRAAQVRMIEETLRFAG 150
+ELK+GIAE YDESS +WEDIWGDHMHHGFY PD VS S DHRAAQ+RM++E LRFAG
Sbjct: 4 QELKQGIAELYDESSGVWEDIWGDHMHHGFYNPDDQVSGSGSDHRAAQIRMMQEALRFAG 63
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
+SEDP K PK VVDVGCGIGGSSRY+A+KFGAKCQGITLSP QAQRANALA GLADKV
Sbjct: 64 ISEDPEKGPKTVVDVGCGIGGSSRYIARKFGAKCQGITLSPFQAQRANALAETEGLADKV 123
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA 270
SFQV DAL+QPFPDGQFDLVWSMESGEHMPDK KFV ELARV AP TI+IVTWCHR L
Sbjct: 124 SFQVADALEQPFPDGQFDLVWSMESGEHMPDKRKFVGELARVAAPGATIVIVTWCHRVLG 183
Query: 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330
PSEESLQPWE + LKKICDAYYLP WCSTADYV LL+SLSL+DIK DWSQ VAPFWPAV
Sbjct: 184 PSEESLQPWEMKHLKKICDAYYLPDWCSTADYVNLLESLSLQDIKTADWSQYVAPFWPAV 243
Query: 331 IHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
I SALTWKG TSLLR+G+KTI+GAL MPLMIEGY+K LIKFAIITCRKP
Sbjct: 244 IRSALTWKGLTSLLRSGMKTIRGALVMPLMIEGYKKGLIKFAIITCRKPE 293
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359807465|ref|NP_001240883.1| tocopherol O-methyltransferase, chloroplastic-like [Glycine max] gi|342330688|dbj|BAK57287.1| gamma-tocopherol methyltransferase [Glycine max] gi|342330694|dbj|BAK57290.1| gamma-tocopherol methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 233/288 (80%), Positives = 267/288 (92%), Gaps = 1/288 (0%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV-S 152
+L++GIAEFYDESS +WE+IWGDHMHHGFY+PDS+VSVSDHRAAQ+RMI+E+LRFA + S
Sbjct: 15 KLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLS 74
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
E+P+K PK++VDVGCGIGGSSRYLAKKFGA GITLSPVQAQRAN+LAAA+GLADKVSF
Sbjct: 75 ENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSF 134
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+V DAL+QPFPDG+FDLVWSMESGEHMPDK+KFV ELARV AP GTIIIVTWCHRDL P
Sbjct: 135 EVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPD 194
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332
E+SL PWEQ+LLKKICD+YYLPAWCST+DYVKLL+SLSL+DIK+ DWS VAPFWPAVI
Sbjct: 195 EQSLLPWEQDLLKKICDSYYLPAWCSTSDYVKLLESLSLQDIKSADWSPFVAPFWPAVIR 254
Query: 333 SALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
+ALTW G TSLLR+GLKTIKGALAMPLMI+GY+K+LIKF+IITCRKP
Sbjct: 255 TALTWNGLTSLLRSGLKTIKGALAMPLMIKGYKKDLIKFSIITCRKPE 302
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|91694287|gb|ABE41795.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/329 (72%), Positives = 273/329 (82%), Gaps = 15/329 (4%)
Query: 67 VSSFSRKLITRASSTT-----STTTMSDAAA----------RELKEGIAEFYDESSSLWE 111
+ +++R+ I SS + S T M+ ++ +ELK+GIA+ YDESS +WE
Sbjct: 40 IQNYTRRRIITCSSNSRRRMASVTAMNAGSSSSVEVGIQNQQELKKGIADLYDESSGIWE 99
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
DIWGDHMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGG
Sbjct: 100 DIWGDHMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGG 159
Query: 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231
SSRYLAKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVW
Sbjct: 160 SSRYLAKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVW 219
Query: 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291
SMESGEHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+
Sbjct: 220 SMESGEHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAF 279
Query: 292 YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTI 351
YLPAWCS ADYVKLLQS SL+DIKAEDWS+NVAPFWPAVI SALTWKGFTS+LR+G KTI
Sbjct: 280 YLPAWCSAADYVKLLQSNSLQDIKAEDWSENVAPFWPAVIKSALTWKGFTSVLRSGWKTI 339
Query: 352 KGALAMPLMIEGYQKNLIKFAIITCRKPR 380
K ALAMPLMIEGY+K LIKFAIITCRKP
Sbjct: 340 KAALAMPLMIEGYKKGLIKFAIITCRKPE 368
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|325516264|gb|ADZ24710.1| gamma-tocopherol methyltransferase [Solanum pennellii] | Back alignment and taxonomy information |
|---|
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/299 (77%), Positives = 262/299 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS +WEDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 62 SSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGDHMHHGYYEPKSSVELSDHRAAQIR 121
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 122 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 181
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 182 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 241
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYV LLQS SL+DIKAEDWS
Sbjct: 242 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVNLLQSNSLQDIKAEDWS 301
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
+NVAPFWPAVI SALTWKGFTS+LR+G KTIK ALAMPLMIEGY+K LIKFAIITCRKP
Sbjct: 302 ENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKP 360
|
Source: Solanum pennellii Species: Solanum pennellii Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|318068176|gb|ADV36922.1| gamma-tocopherol methyltransferase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 500 bits (1288), Expect = e-139, Method: Compositional matrix adjust.
Identities = 238/324 (73%), Positives = 272/324 (83%), Gaps = 10/324 (3%)
Query: 64 LFGVSSFSRKLITRASSTTSTTTMSDAAA-------RELKEGIAEFYDESSSLWEDIWGD 116
+ SS SR+ R +S T+ +S ++ +ELK+GIA+ YDESS +WEDIWGD
Sbjct: 48 IITCSSNSRR---RMASVTALNAVSSSSVEVGIQNQQELKKGIADLYDESSGIWEDIWGD 104
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
HMHHG+YEP SSV +SDHRAAQ+RMIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYL
Sbjct: 105 HMHHGYYEPQSSVELSDHRAAQIRMIEKALSFAAISEDPAKKPTSIVDVGCGIGGSSRYL 164
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
AKK+GA +GITLSPVQA+RA ALA A+GL DKVSFQV DAL QPFPDGQFDLVWSMESG
Sbjct: 165 AKKYGATAKGITLSPVQAERAQALADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESG 224
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMP+K KFV ELARV AP GTII+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAW
Sbjct: 225 EHMPNKEKFVGELARVAAPGGTIILVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAW 284
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALA 356
CSTADYVKLLQS SL+DIKA+DWS+NVAPFWPAVI SALTWKG TS+LR+G KTIK ALA
Sbjct: 285 CSTADYVKLLQSNSLQDIKAQDWSENVAPFWPAVIKSALTWKGLTSVLRSGWKTIKAALA 344
Query: 357 MPLMIEGYQKNLIKFAIITCRKPR 380
MPLMIEGY+K LIKFAIITCRKP
Sbjct: 345 MPLMIEGYKKGLIKFAIITCRKPE 368
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|342330690|dbj|BAK57288.1| gamma-tocopherol methyltransferase [Glycine max] gi|342330692|dbj|BAK57289.1| gamma-tocopherol methyltransferase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 499 bits (1286), Expect = e-139, Method: Compositional matrix adjust.
Identities = 232/288 (80%), Positives = 265/288 (92%), Gaps = 1/288 (0%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV-S 152
+L++GIAEFYDESS +WE+IWGDHMHHGFY+PDS+VSVSDHRAAQ+RMI+E+LRFA + S
Sbjct: 15 KLQKGIAEFYDESSGIWENIWGDHMHHGFYDPDSTVSVSDHRAAQIRMIQESLRFASLLS 74
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
E+P+K PK++VDVGCGIGGSSRYLAKKFGA GITLSPVQAQRAN+LAAA+GLADKVSF
Sbjct: 75 ENPSKWPKSIVDVGCGIGGSSRYLAKKFGATSVGITLSPVQAQRANSLAAAQGLADKVSF 134
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
+V DAL+QPFPDG+FDLVWSMESGEHMPDK+KFV ELARV AP GTIIIVTWCHRDL P
Sbjct: 135 EVADALKQPFPDGKFDLVWSMESGEHMPDKAKFVGELARVAAPGGTIIIVTWCHRDLGPD 194
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIH 332
E+SL PWEQ+LLKKICD+YYLPAWCS +DYVKLL+SLSL+DIK+ DWS VAPFWPAVI
Sbjct: 195 EQSLLPWEQDLLKKICDSYYLPAWCSISDYVKLLESLSLQDIKSADWSPFVAPFWPAVIR 254
Query: 333 SALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
+ALTW G TSLLR+GLKTIKGALAMPLMI+GY+K+LIKF IITCRKP
Sbjct: 255 TALTWNGLTSLLRSGLKTIKGALAMPLMIKGYKKDLIKFGIITCRKPE 302
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|347326940|gb|AEO80033.1| gamma tocopherol methyl transferase [Solanum lycopersicum] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 232/300 (77%), Positives = 262/300 (87%)
Query: 81 TTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR 140
++S+ + +ELK+GIA+ YDESS + EDIWGDHMHHG+YEP SSV +SDHRAAQ+R
Sbjct: 63 SSSSVEVGIQNQQELKKGIADLYDESSGIREDIWGDHMHHGYYEPKSSVELSDHRAAQIR 122
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200
MIE+ L FA +SEDP K+P ++VDVGCGIGGSSRYLAKK+GA +GITLSPVQA+RA AL
Sbjct: 123 MIEQALSFAAISEDPAKKPTSIVDVGCGIGGSSRYLAKKYGATAKGITLSPVQAERAQAL 182
Query: 201 AAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTII 260
A A+GL DKVSFQV DAL QPFPDGQFDLVWSMESGEHMP+K KFV ELARV AP GTII
Sbjct: 183 ADAQGLGDKVSFQVADALNQPFPDGQFDLVWSMESGEHMPNKEKFVGELARVAAPGGTII 242
Query: 261 IVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
+VTWCHRDL+PSEESL P E+ELL KIC A+YLPAWCSTADYVKLLQS SL+DIKAEDWS
Sbjct: 243 LVTWCHRDLSPSEESLTPEEKELLNKICKAFYLPAWCSTADYVKLLQSNSLQDIKAEDWS 302
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
+NVAPFWPAVI SALTWKGFTS+LR+G KTIK ALAMPLMIEGY+K LIKFAIITCRKP
Sbjct: 303 ENVAPFWPAVIKSALTWKGFTSVLRSGWKTIKAALAMPLMIEGYKKGLIKFAIITCRKPE 362
|
Source: Solanum lycopersicum Species: Solanum lycopersicum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 380 | ||||||
| TAIR|locus:2010921 | 348 | G-TMT "gamma-tocopherol methyl | 0.842 | 0.919 | 0.653 | 7.3e-114 | |
| DICTYBASE|DDB_G0275359 | 462 | DDB_G0275359 [Dictyostelium di | 0.642 | 0.528 | 0.260 | 1.5e-20 | |
| UNIPROTKB|G4N2S6 | 340 | MGG_04901 "Methyltransferase" | 0.239 | 0.267 | 0.375 | 5.1e-20 | |
| UNIPROTKB|Q9KJ21 | 279 | Q9KJ21 "Sarcosine/dimethylglyc | 0.534 | 0.727 | 0.299 | 1e-14 | |
| UNIPROTKB|Q9KJ20 | 565 | Q9KJ20 "Glycine/sarcosine/dime | 0.528 | 0.355 | 0.278 | 3.8e-14 | |
| UNIPROTKB|Q5LR84 | 407 | SPO2245 "Conserved domain prot | 0.260 | 0.243 | 0.383 | 1.4e-13 | |
| TIGR_CMR|SPO_2245 | 407 | SPO_2245 "conserved domain pro | 0.260 | 0.243 | 0.383 | 1.4e-13 | |
| TAIR|locus:2012938 | 361 | SMT2 "sterol methyltransferase | 0.610 | 0.642 | 0.250 | 4.4e-11 | |
| TIGR_CMR|CPS_3306 | 273 | CPS_3306 "methyltransferase, U | 0.310 | 0.432 | 0.304 | 5.1e-11 | |
| UNIPROTKB|G5EGY9 | 380 | MGCH7_ch7g116 "Sterol 24-C-met | 0.557 | 0.557 | 0.245 | 6.6e-11 |
| TAIR|locus:2010921 G-TMT "gamma-tocopherol methyltransferase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1123 (400.4 bits), Expect = 7.3e-114, P = 7.3e-114
Identities = 211/323 (65%), Positives = 243/323 (75%)
Query: 60 RSSLLFGVSSFSRKLIXXXXXXXXXXXXXXXXXRELKEGIAEFYDESSSLWEDIWGDHMH 119
+SSLLF S S + L++GIAEFY+E+S LWE+IWGDHMH
Sbjct: 25 KSSLLFRSPSSSSSVSMTTTRGNVAVAAAATSTEALRKGIAEFYNETSGLWEEIWGDHMH 84
Query: 120 HGFYEPDSSVSVSD--HRAAQVRMIEETLRFAGVS-EDPTKRPKNVVDVGCGIGGSSRYL 176
HGFY+PDSSV +SD H+ AQ+RMIEE+LRFAGV+ E+ K+ K VVDVGCGIGGSSRYL
Sbjct: 85 HGFYDPDSSVQLSDSGHKEAQIRMIEESLRFAGVTDEEEEKKIKKVVDVGCGIGGSSRYL 144
Query: 177 AKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A KFGA+C GITLSPV K SFQV DAL QPF DG+FDLVWSMESG
Sbjct: 145 ASKFGAECIGITLSPVQAKRANDLAAAQSLAHKASFQVADALDQPFEDGKFDLVWSMESG 204
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
EHMPDK+KFV EL RV AP G IIIVTWCHR+L+ EE+LQPWEQ +L KIC +YLPAW
Sbjct: 205 EHMPDKAKFVKELVRVAAPGGRIIIVTWCHRNLSAGEEALQPWEQNILDKICKTFYLPAW 264
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALA 356
CST DYV LLQS SL+DIK DWS+NVAPFWPAVI +ALTWKG SLLR+G+K+IKGAL
Sbjct: 265 CSTDDYVNLLQSHSLQDIKCADWSENVAPFWPAVIRTALTWKGLVSLLRSGMKSIKGALT 324
Query: 357 MPLMIEGYQKNLIKFAIITCRKP 379
MPLMIEGY+K +IKF IITC+KP
Sbjct: 325 MPLMIEGYKKGVIKFGIITCQKP 347
|
|
| DICTYBASE|DDB_G0275359 DDB_G0275359 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 1.5e-20, P = 1.5e-20
Identities = 69/265 (26%), Positives = 125/265 (47%)
Query: 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR-FAGVSEDPTK 157
++++YD + ++ WG+H H ++ D+ + V+ +E ++ A +++D
Sbjct: 189 VSDYYDIVTETYQSGWGNHFHFAPFKTDT-----EPLETAVKRLEHSVADSARITKDSL- 242
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDA 217
V+DVGCG+GG + + + G K +G+ ++ D+ SF GDA
Sbjct: 243 ----VLDVGCGVGGPTLEICQYTGCKIRGLNINKKQVGIATQRAKDLGVSDRASFDHGDA 298
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
++ P+PD FD+V ES HMPDK F+ E RV P G + W + P+E+ +
Sbjct: 299 MKMPYPDNTFDVVTFFESTCHMPDKQAFIKECYRVLKPGGRMSGSEWLQCE-KPTEKDIV 357
Query: 278 PWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAPFWPAVIHSAL 335
+ ++ IC + +P S Y +++S A D +Q N+ W + + +
Sbjct: 358 ----QFIEPICAHHSVPHMGSLMSYRSMMESAGFYVHIAMDLTQEGNILRNWEVLDNKTI 413
Query: 336 -TWKGFT--SLLRTGLKTIKGALAM 357
T+K S+ T I GA+A+
Sbjct: 414 NTFKALPKGSVDPTIEMMISGAIAL 438
|
|
| UNIPROTKB|G4N2S6 MGG_04901 "Methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 180 (68.4 bits), Expect = 5.1e-20, Sum P(2) = 5.1e-20
Identities = 36/96 (37%), Positives = 55/96 (57%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LK+ I YD +S + +WG H+HHG++ D S + AQ +I+ L + + E
Sbjct: 35 LKDRIKLHYDLASDYYLSLWGQHVHHGYWPTDESKAKDTKEVAQTNLIDLLLEISKIPEG 94
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
+ V+DVGCG+GG++R+LA K G GIT+S
Sbjct: 95 GS-----VLDVGCGLGGTTRHLASKLGCSVTGITIS 125
|
|
| UNIPROTKB|Q9KJ21 Q9KJ21 "Sarcosine/dimethylglycine N-methyltransferase" [Halorhodospira halochloris (taxid:1052)] | Back alignment and assigned GO terms |
|---|
Score = 199 (75.1 bits), Expect = 1.0e-14, P = 1.0e-14
Identities = 68/227 (29%), Positives = 102/227 (44%)
Query: 97 EGIAEFY--DESSSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
E ++Y +++ + + IWG + +H G Y D ++D A R +E R + +S
Sbjct: 11 ETARQYYNSEDADNFYAIIWGGEDIHIGLYNDDEE-PIAD---ASRRTVE---RMSSLSR 63
Query: 154 DPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSF 212
P + V+D+G G GGS+RYLA K+G K + LS D +
Sbjct: 64 Q--LGPDSYVLDMGAGYGGSARYLAHKYGCKVAALNLSE-RENERDRQMNKEQGVDHLIE 120
Query: 213 QVGDALQQ-PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
V A + P+ DG FDLVWS +S H PD+ + + E +RV G I D P
Sbjct: 121 VVDAAFEDVPYDDGVFDLVWSQDSFLHSPDRERVLREASRVLRSGGEFIFTDPMQADDCP 180
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
E +QP I D +L + Y + L+ L E+I ED
Sbjct: 181 -EGVIQP--------ILDRIHLETMGTPNFYRQTLRDLGFEEITFED 218
|
|
| UNIPROTKB|Q9KJ20 Q9KJ20 "Glycine/sarcosine/dimethylglycine N-methyltransferase" [Actinopolyspora halophila (taxid:1850)] | Back alignment and assigned GO terms |
|---|
Score = 207 (77.9 bits), Expect = 3.8e-14, P = 3.8e-14
Identities = 63/226 (27%), Positives = 102/226 (45%)
Query: 101 EFY--DESSSLWEDIWGDH-MHHGFYE-PDSSVSVSDHRAAQVRMIEETLRFAG-VSEDP 155
++Y +++ + + +WG + +H G Y+ P ++ + R Q R AG V P
Sbjct: 303 DYYNSEDADNFYYHVWGGNDIHVGLYQTPQEDIATASERTVQ--------RMAGKVDISP 354
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVG 215
R ++D+G G GG++RYLA+ +G + LS V + G
Sbjct: 355 ETR---ILDLGAGYGGAARYLARTYGCHVTCLNLSEVENQRNREITRAEGLEHLIEVTDG 411
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
P+ D FD+VWS +S H D+S+ + E+ RV P G+++ D A E
Sbjct: 412 SFEDLPYQDNAFDVVWSQDSFLHSGDRSRVMEEVTRVLKPKGSVLFTDPMASDSAKKNE- 470
Query: 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
L P I D +L + S Y K L L L++I+ ED S+
Sbjct: 471 LGP--------ILDRLHLDSLGSPGFYRKELTRLGLQNIEFEDLSE 508
|
|
| UNIPROTKB|Q5LR84 SPO2245 "Conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
|
| TIGR_CMR|SPO_2245 SPO_2245 "conserved domain protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 196 (74.1 bits), Expect = 1.4e-13, Sum P(2) = 1.4e-13
Identities = 38/99 (38%), Positives = 53/99 (53%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQPF 222
+D+GCG+GG++RY A FG++ +GI L+P DKV+ V AL PF
Sbjct: 200 LDIGCGLGGAARYAAHSFGSQIEGIDLTPEYVETGGALCQWVGLSDKVNLSVASALSMPF 259
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G FD+ + M G ++ DK E+ARV P GT I
Sbjct: 260 ESGDFDIAYMMHVGMNIEDKRALFKEVARVLKPGGTFAI 298
|
|
| TAIR|locus:2012938 SMT2 "sterol methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 177 (67.4 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 63/251 (25%), Positives = 101/251 (40%)
Query: 94 ELKEGIAEFYDESSSLWEDI----WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA 149
E E + +F D +L DI WG H + P S+ H+ A R+ EE
Sbjct: 65 ETAEKVPDFVDTFYNLVTDIYEWGWGQSFH---FSP--SIPGKSHKDA-TRLHEEM---- 114
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDK 209
V K + ++DVGCG+GG R +A A GIT++
Sbjct: 115 AVDLIQVKPGQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDAL 174
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
G+ LQ PF D FD +S+E+ H P + +E+ RV P + W +
Sbjct: 175 CEVVCGNFLQMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEK 234
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA-PFWP 328
+E+ E+++ I LP + D + + + E +K +D + A P+W
Sbjct: 235 FKAEDDEHV---EVIQGIERGDALPGLRAYVDIAETAKKVGFEIVKEKDLASPPAEPWWT 291
Query: 329 AVIHSALT-WK 338
+ L W+
Sbjct: 292 RLKMGRLAYWR 302
|
|
| TIGR_CMR|CPS_3306 CPS_3306 "methyltransferase, UbiE/COQ5 family" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 172 (65.6 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 38/125 (30%), Positives = 62/125 (49%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQQ 220
+++DVGCG+GGS+R L+ + G GI LS +V F VG AL+
Sbjct: 64 HILDVGCGVGGSTRRLSHETGCHVTGIDLSDEYIDAAERLTQLLNMQARVKFNVGSALEL 123
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ--- 277
P+ D FD WS++ ++ DK ++ E+ RV P ++ C + E+++
Sbjct: 124 PYADNTFDGAWSIQMNMNVEDKLGWLKEMYRVLKPGARAVLYEVCGHE----EKTIYFPV 179
Query: 278 PWEQE 282
PW Q+
Sbjct: 180 PWAQD 184
|
|
| UNIPROTKB|G5EGY9 MGCH7_ch7g116 "Sterol 24-C-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 176 (67.0 bits), Expect = 6.6e-11, P = 6.6e-11
Identities = 57/232 (24%), Positives = 99/232 (42%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSV--SVSDHRAAQVRMIEETLRFAGVSEDPTKRP 159
+Y+ ++ ++E WG H + + S +++ H I G+ E T
Sbjct: 83 YYNLATDIYEYGWGQSFHFCRFSHNESFYQAIARHEHYLAHQI-------GIKEGMT--- 132
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVXXXXXXXXXXXXXXXDKVSFQVGDALQ 219
V+DVGCG+GG +R +AK G G+ + ++ F GD +Q
Sbjct: 133 --VLDVGCGVGGPAREIAKFTGCNVVGLNNNDYQIDRATHYAKQEKLDSQLQFVKGDFMQ 190
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FPD FD V+++E+ H P SE+ RV P GT + W D ++L
Sbjct: 191 MSFPDESFDAVYAIEATVHAPKLEGVYSEIFRVLKPGGTFGVYEWLMTD-DYDNDNLH-- 247
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ--NVAP-FWP 328
+++ KI + ++ +++ E IK +D +Q + P +WP
Sbjct: 248 HRDIRLKIELGNGISNMVPISEGEAAMRAAGFEIIKTDDLAQKGDELPWYWP 299
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9ZSK1 | GTOMC_ARATH | 2, ., 1, ., 1, ., 9, 5 | 0.7361 | 0.75 | 0.8189 | yes | no |
| Q6ZIK0 | GTOMC_ORYSJ | 2, ., 1, ., 1, ., 9, 5 | 0.7649 | 0.75 | 0.7872 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.95 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | 0.963 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 380 | |||
| PLN02244 | 340 | PLN02244, PLN02244, tocopherol O-methyltransferase | 0.0 | |
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 6e-25 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 1e-19 | |
| COG2230 | 283 | COG2230, Cfa, Cyclopropane fatty acid synthase and | 6e-17 | |
| PLN02336 | 475 | PLN02336, PLN02336, phosphoethanolamine N-methyltr | 4e-16 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 5e-16 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 7e-15 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 2e-14 | |
| PTZ00098 | 263 | PTZ00098, PTZ00098, phosphoethanolamine N-methyltr | 6e-14 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 8e-14 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 6e-12 | |
| pfam02353 | 273 | pfam02353, CMAS, Mycolic acid cyclopropane synthet | 1e-11 | |
| PRK10258 | 251 | PRK10258, PRK10258, biotin biosynthesis protein Bi | 4e-11 | |
| PRK00216 | 239 | PRK00216, ubiE, ubiquinone/menaquinone biosynthesi | 5e-11 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 1e-10 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-10 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 7e-10 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 1e-09 | |
| smart00828 | 224 | smart00828, PKS_MT, Methyltransferase in polyketid | 1e-09 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 1e-09 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-09 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 2e-09 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 4e-09 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 4e-09 | |
| COG4106 | 257 | COG4106, Tam, Trans-aconitate methyltransferase [G | 2e-08 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 3e-08 | |
| PRK07580 | 230 | PRK07580, PRK07580, Mg-protoporphyrin IX methyl tr | 9e-07 | |
| PRK11705 | 383 | PRK11705, PRK11705, cyclopropane fatty acyl phosph | 4e-06 | |
| TIGR02752 | 231 | TIGR02752, MenG_heptapren, demethylmenaquinone met | 5e-06 | |
| PLN02233 | 261 | PLN02233, PLN02233, ubiquinone biosynthesis methyl | 1e-05 | |
| pfam01209 | 233 | pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransf | 1e-05 | |
| PRK09328 | 275 | PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth | 8e-05 | |
| COG4123 | 248 | COG4123, COG4123, Predicted O-methyltransferase [G | 2e-04 | |
| PRK11088 | 272 | PRK11088, rrmA, 23S rRNA methyltransferase A; Prov | 2e-04 | |
| pfam12147 | 311 | pfam12147, Methyltransf_20, Putative methyltransfe | 3e-04 | |
| COG2265 | 432 | COG2265, TrmA, SAM-dependent methyltransferases re | 5e-04 | |
| PRK05785 | 226 | PRK05785, PRK05785, hypothetical protein; Provisio | 0.001 | |
| TIGR03534 | 251 | TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met | 0.001 | |
| pfam13679 | 143 | pfam13679, Methyltransf_32, Methyltransferase doma | 0.002 | |
| PRK14968 | 188 | PRK14968, PRK14968, putative methyltransferase; Pr | 0.002 | |
| PLN02396 | 322 | PLN02396, PLN02396, hexaprenyldihydroxybenzoate me | 0.002 | |
| COG4122 | 219 | COG4122, COG4122, Predicted O-methyltransferase [G | 0.003 | |
| PRK14103 | 255 | PRK14103, PRK14103, trans-aconitate 2-methyltransf | 0.003 | |
| PLN02490 | 340 | PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | 0.003 | |
| pfam05175 | 170 | pfam05175, MTS, Methyltransferase small domain | 0.003 |
| >gnl|CDD|215135 PLN02244, PLN02244, tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Score = 583 bits (1505), Expect = 0.0
Identities = 225/346 (65%), Positives = 263/346 (76%), Gaps = 13/346 (3%)
Query: 41 MSACLRPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMSDAAAR------E 94
+A L + A T RS + SR + + + + DAA+ +
Sbjct: 2 PAAALASR---SSSSATTSRSG--SRSTRLSRPSSSASGVRRTLARLEDAASPAPAATAD 56
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
LKEGIAEFYDESS +WED+WG+HMHHG+Y+P +S DHR AQ+RMIEE+L +AGV +D
Sbjct: 57 LKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGASRG--DHRQAQIRMIEESLAWAGVPDD 114
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KRPK +VDVGCGIGGSSRYLA+K+GA +GITLSPVQA RANALAAA+GL+DKVSFQV
Sbjct: 115 DEKRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQV 174
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
DAL QPF DGQFDLVWSMESGEHMPDK KFV ELARV AP G IIIVTWCHRDL P E
Sbjct: 175 ADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGET 234
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
SL+P EQ+LL KIC AYYLPAWCST+DYVKL +SL L+DIK EDWS++VAPFWPAVI SA
Sbjct: 235 SLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPAVIKSA 294
Query: 335 LTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380
LT KG LL +G TI+GAL MPLMI+G++K LIKFA+ITCRKP
Sbjct: 295 LTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKPL 340
|
Length = 340 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 97.0 bits (242), Expect = 6e-25
Identities = 38/99 (38%), Positives = 51/99 (51%), Gaps = 7/99 (7%)
Query: 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222
+DVGCG G + LA++ GA+ G+ LSP A F VGDA PF
Sbjct: 1 LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARK-------RAPRKFVVGDAEDLPF 53
Query: 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
PD FD+V S H+PD + + E+ARV P G ++I
Sbjct: 54 PDESFDVVVSSLVLHHLPDPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 1e-19
Identities = 41/120 (34%), Positives = 61/120 (50%), Gaps = 5/120 (4%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
T V V+DVGCG G +R LA++ G + + + + +A A A
Sbjct: 9 ARTFELLAVQPGDR-----VLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKER 63
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
A GL V F GDA PFPDG FD V S +H+ D ++ ++E+ARV P G ++++
Sbjct: 64 AAGLGPNVEFVRGDADGLPFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVL 123
|
Length = 241 |
| >gnl|CDD|225139 COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 6e-17
Identities = 56/240 (23%), Positives = 97/240 (40%), Gaps = 31/240 (12%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYE-PDSSVSVSDHRAAQVRMIEETLRFAGVS 152
E I YD S+ + M + ++E PD ++ AQ ++ L G+
Sbjct: 17 AENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMTLE-----EAQRAKLDLILEKLGL- 70
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
P ++D+GCG GG + Y A+++G G+TLS Q A AARGL D V
Sbjct: 71 -KPGMT---LLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEV 126
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLA 270
++ D + FD + S+ EH+ ++ F ++ + P G +++ + D
Sbjct: 127 RLQD---YRDFEEPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD-- 181
Query: 271 PSEESLQPWEQELLKKICDAYYLPA------WCSTADY-VKLLQSLSLEDIK-AEDWSQN 322
+ + K I LP+ S A + V ++SL + W +
Sbjct: 182 QEFRRFPDF---IDKYIFPGGELPSISEILELASEAGFVVLDVESLRPHYARTLRLWRER 238
|
Length = 283 |
| >gnl|CDD|177970 PLN02336, PLN02336, phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 45/137 (32%), Positives = 65/137 (47%), Gaps = 12/137 (8%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN--- 198
+E T F V + K + V+DVGCGIGG Y+A+ F GI LS N
Sbjct: 252 LETTKEF--VDKLDLKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLS------VNMIS 303
Query: 199 -ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAG 257
AL A G V F+V D ++ +PD FD+++S ++ H+ DK + P G
Sbjct: 304 FALERAIGRKCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGG 363
Query: 258 TIIIVTWCHRDLAPSEE 274
++I +C PS E
Sbjct: 364 KVLISDYCRSPGTPSPE 380
|
Length = 475 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 5e-16
Identities = 38/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D+GCG G + LA+K G + GI +S ++A A G + V F
Sbjct: 2 KSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGY-ENVEFIQ 60
Query: 215 GDALQQP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
GD + P D FD+V S E H+PD K + E+ RV P G +I+
Sbjct: 61 GDIEELPQLQLEDNSFDVVISNEVLNHLPDPDKVLEEIIRVLKPGGVLIVSD 112
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-15
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 3/106 (2%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219
V+D+GCG G + LA GA+ G+ +SPV + A AAA LAD V GDA +
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARK-AAAALLADNVEVLKGDAEEL 59
Query: 220 QPFPDGQFDLVWSMESGEH-MPDKSKFVSELARVTAPAGTIIIVTW 264
P D FD++ S H + D ++F+ E R+ P G +++
Sbjct: 60 PPEADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 71.9 bits (177), Expect = 2e-14
Identities = 44/144 (30%), Positives = 64/144 (44%), Gaps = 26/144 (18%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK-----V 210
K V+DV CG G + LAK G + G+ +S + L AR K V
Sbjct: 50 KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISE------SMLEVAREKLKKKGVQNV 103
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F VGDA PFPD FD V ++ G ++ D K + E+ RV P G ++++
Sbjct: 104 EFVVGDAENLPFPDNSFDAV-TISFGLRNVTDIDKALKEMYRVLKPGGRLLVL------- 155
Query: 270 APSEESLQPWEQELLKKICDAYYL 293
E +P + +L+K YY
Sbjct: 156 ----EFSKP-DNPVLRKAYILYYF 174
|
Length = 238 |
| >gnl|CDD|173391 PTZ00098, PTZ00098, phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 6e-14
Identities = 39/161 (24%), Positives = 80/161 (49%), Gaps = 14/161 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G+GG +Y+ +K+GA G+ + A + + +K+ F+ D L++
Sbjct: 56 VLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDK---NKIEFEANDILKKD 112
Query: 222 FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
FP+ FD+++S ++ H+ DK K + + P G ++I +C + ++ W
Sbjct: 113 FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYC-------ADKIENW 165
Query: 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
++E I Y +Y L++S + +++ A+D S
Sbjct: 166 DEEFKAYIKKRKY--TLIPIQEYGDLIKSCNFQNVVAKDIS 204
|
Length = 263 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 8e-14
Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
V+D+GCG G + LA+ F GA+ G+ LSP + A A L +++F GD
Sbjct: 1 PGARVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARE-NAKLALGPRITFVQGD 59
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A FD V+ G + + + LA + P G +++
Sbjct: 60 APDALDLLEGFDAVFIGGGGGDLLE---LLDALASLLKPGGRLVLNA 103
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-12
Identities = 32/137 (23%), Positives = 50/137 (36%), Gaps = 20/137 (14%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + + R K V+D+GCG G R L ++ G G+ SP
Sbjct: 2 RRQRERFLARLLARLL----PRLKPGGRVLDIGCGTGILLRLLRER-GFDVTGVDPSPAA 56
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
+ DA G++DL+ + E EH+PD + +L +
Sbjct: 57 VLIFSLF---------------DAPDPAVLAGKYDLITAFEVLEHLPDPPALLQQLRELL 101
Query: 254 APAGTIIIVTWCHRDLA 270
P G ++I T D A
Sbjct: 102 KPGGVLLISTPLADDDA 118
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|216988 pfam02353, CMAS, Mycolic acid cyclopropane synthetase | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 1e-11
Identities = 39/148 (26%), Positives = 63/148 (42%), Gaps = 12/148 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AQ ++ L G+ T ++D+GCG GG R A+++ G+TLS Q +
Sbjct: 45 EAQQAKLDLILDKLGLKPGMT-----LLDIGCGWGGLMRRAAERYDVNVVGLTLSKNQYK 99
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVT 253
A AA GL KV + D D FD + S+ EH+ ++ F +L +
Sbjct: 100 HARQRVAAEGLQRKVEVLLQDYRDF---DEPFDRIVSVGMFEHVGHENYDTFFKKLYNLL 156
Query: 254 APAGTIII--VTWCHRDLAPSEESLQPW 279
P G +++ +T H D +
Sbjct: 157 PPGGLMLLHTITGLHPDETSERGLPLKF 184
|
This family consist of Cyclopropane-fatty-acyl-phospholipid synthase or CFA synthase EC:2.1.1.79 this enzyme catalyze the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid <=> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. Length = 273 |
| >gnl|CDD|182340 PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-11
Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 16/129 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVS 211
P ++ +V+D GCG G SRY ++ G++ + LSP QA++ +A AD
Sbjct: 39 PQRKFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA-------ADH-- 88
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ GD P FDL WS + + + S + EL RV P G + T L
Sbjct: 89 YLAGDIESLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLP- 147
Query: 272 SEESLQPWE 280
E Q W+
Sbjct: 148 --ELHQAWQ 154
|
Length = 251 |
| >gnl|CDD|234689 PRK00216, ubiE, ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Score = 61.7 bits (151), Expect = 5e-11
Identities = 44/142 (30%), Positives = 62/142 (43%), Gaps = 24/142 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLADKV 210
+ V+D+ CG G + LAK G + + L + LA R GL+ V
Sbjct: 50 RPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGM----LAVGREKLRDLGLSGNV 105
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
F GDA PFPD FD V ++ G ++PD K + E+ RV P G ++I+
Sbjct: 106 EFVQGDAEALPFPDNSFDAV-TIAFGLRNVPDIDKALREMYRVLKPGGRLVIL------- 157
Query: 270 APSEESLQPWEQELLKKICDAY 291
E +P LKK D Y
Sbjct: 158 ----EFSKP-TNPPLKKAYDFY 174
|
Length = 239 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 40/141 (28%), Positives = 57/141 (40%), Gaps = 25/141 (17%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARG---LADKVS 211
+ + V+DV CG G + LAK K G+ S L A+ L +
Sbjct: 38 FKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSS------EMLEVAKKKSELPLNIE 91
Query: 212 FQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA 270
F DA PF D FD V ++ G ++ D K + E+ RV P G ++I+
Sbjct: 92 FIQADAEALPFEDNSFDAV-TIAFGLRNVTDIQKALREMYRVLKPGGRLVIL-------- 142
Query: 271 PSEESLQPWEQELLKKICDAY 291
E +P LLKK Y
Sbjct: 143 ---EFSKP-ANALLKKFYKFY 159
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 2e-10
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 5/99 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
++D+GCG G R LA+ + G+ +S + A +G KV F V DA P
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP--KVRFVVADARDLP 58
Query: 222 FPDGQFDLVWSMESG-EHMPDKS--KFVSELARVTAPAG 257
F +G FDLV +++ K + E AR+ P G
Sbjct: 59 FEEGSFDLVICAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 7e-10
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 10/116 (8%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
V+D G G G A+ A+ G+ L P A A A GLA +V VGDA
Sbjct: 1 GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 218 LQ-QPFPDGQFDLV-----WSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTW 264
+ PDG FDLV + +G+ ++ +F++ R+ P G ++++T
Sbjct: 61 RELLELPDGSFDLVLGNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGGVLVVITP 116
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (138), Expect = 1e-09
Identities = 41/167 (24%), Positives = 61/167 (36%), Gaps = 6/167 (3%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSF 212
V+D+GCG G + LA+ G + + A A A A G V F
Sbjct: 44 RLLPGGLGVLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDF 102
Query: 213 QVGDALQQ--PFPDG-QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDL 269
V DAL PF D FDLV S+ H+ +K + EL RV P G +++ L
Sbjct: 103 VVADALGGVLPFEDSASFDLVISL-LVLHLLPPAKALRELLRVLKPGGRLVLSDLLRDGL 161
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316
+ + + + D + + L + L L
Sbjct: 162 LEGRLAALLGFGDPVLERGDILLELEALLRLELLDLEELLGLLGELE 208
|
Length = 257 |
| >gnl|CDD|214839 smart00828, PKS_MT, Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218
K V+D GCG G LA++ + G T+SP QA+ A GL ++ D+
Sbjct: 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
+ PFPD +DLV+ E H+ DK S ++R
Sbjct: 61 KDPFPD-TYDLVFGFEVIHHIKDKMDLFSNISR 92
|
Length = 224 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 1e-09
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 9/133 (6%)
Query: 134 HRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
H+ +R+ I +T+R ++ P V+DVGCG G S LA+ GA GI S
Sbjct: 23 HKMNPLRLDYIRDTIR---KNKKPLF-GLRVLDVGCGGGLLSEPLARL-GANVTGIDASE 77
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250
+ A A L K+ ++ FD+V ME EH+PD F+ A
Sbjct: 78 ENIEVAKLHAKKDPLL-KIEYRCTSVEDLAEKGAKSFDVVTCMEVLEHVPDPQAFIRACA 136
Query: 251 RVTAPAGTIIIVT 263
++ P G + T
Sbjct: 137 QLLKPGGILFFST 149
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 5/100 (5%)
Query: 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQ 219
+D+GCG G R L + G + G+ +SP + A AA GL A +V V DA+
Sbjct: 1 LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
G FD+V + H+ D + L R+ P G +
Sbjct: 61 LDP--GSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 16/169 (9%)
Query: 96 KEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
KE + ++D + W I+G +P S V R + M + L + +
Sbjct: 2 KEQVRHYFDGTAFQRWARIYGSG------DPVSRVR-QTVREGRAAMRRKLLDWLP-KDP 53
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
K V+D GCG G S LAK+ GA + + +S Q A A R +A V F+V
Sbjct: 54 LKG--KRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEV 110
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
D L G+FD+V M+ H P L + + +I T
Sbjct: 111 NDLLSL---CGEFDIVVCMDVLIHYPAS-DMAKALGHLASLTKERVIFT 155
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 4e-09
Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 4/112 (3%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
V+DVGCG G S LA+ GA GI S + A A G+ + ++
Sbjct: 61 LRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVED 117
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GQFD+V ME EH+PD F+ A++ P G + + T +R L
Sbjct: 118 LASAGGQFDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLST-INRTLKA 168
|
Length = 243 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 4e-09
Identities = 36/110 (32%), Positives = 53/110 (48%), Gaps = 8/110 (7%)
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVGD 216
P +V+D+GCG G +R L K+F + + I S +A + V F GD
Sbjct: 35 PASVLDIGCGTGYLTRALLKRF-PQAEFIANDISAGMLAQAKTKLSEN-----VQFICGD 88
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
A + P D FDL+ S + + D S+ +SELARV P G + T+
Sbjct: 89 AEKLPLEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGP 138
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|226591 COG4106, Tam, Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 55/203 (27%), Positives = 85/203 (41%), Gaps = 33/203 (16%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
+ PD + D R R + ++ P +RP+ VVD+GCG G S+ LA+++
Sbjct: 3 WNPDQYLQFEDERTRPARDL--------LARVPLERPRRVVDLGCGPGNSTELLARRWPD 54
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD 241
A GI SP LA A +F+ D L+ P+ DL+++ + +PD
Sbjct: 55 AVITGIDSSP------AMLAKAAQRLPDATFEEAD-LRTWKPEQPTDLLFANAVLQWLPD 107
Query: 242 KSKFVSELARVTAPAGTIII------VTWCH---RDLAPSEESLQPWEQELLKKICDAYY 292
+ + L AP G + + H R+ A P+ QEL +
Sbjct: 108 HPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEA----PFAQELGGRGLTRAP 163
Query: 293 LPAWCSTADYVKLLQSLSLE-DI 314
LP S A Y +LL L+ DI
Sbjct: 164 LP---SPAAYYELLAPLACRVDI 183
|
Length = 257 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 3e-08
Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 14/110 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGD- 216
K V+DVGCG G S +A+ GA GI S ++ R +AL + GL K+ ++
Sbjct: 50 KRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALES--GL--KIDYRQTTA 104
Query: 217 ---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
A + P GQFD+V ME EH+PD + FV A++ P G + T
Sbjct: 105 EELAAEHP---GQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFST 151
|
Length = 233 |
| >gnl|CDD|236059 PRK07580, PRK07580, Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 9e-07
Identities = 46/148 (31%), Positives = 69/148 (46%), Gaps = 20/148 (13%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ D P S V + RA RM + L + D T ++D GCG+
Sbjct: 25 WARIYSD-------APVSKVR-ATVRAGHQRMRDTVLSWLPADGDLT--GLRILDAGCGV 74
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQPFPDGQF 227
G S LA++ GAK +SP + A A GLA ++F+VGD +L G+F
Sbjct: 75 GSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLL-----GRF 128
Query: 228 DLVWSMESGEHMP--DKSKFVSELARVT 253
D V ++ H P D ++ ++ LA +T
Sbjct: 129 DTVVCLDVLIHYPQEDAARMLAHLASLT 156
|
Length = 230 |
| >gnl|CDD|183282 PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 4e-06
Identities = 29/80 (36%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDAL 218
V+D+GCG GG +RY A+ +G G+T+S Q LA R GL V ++ D
Sbjct: 170 RVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQ----KLAQERCAGLP--VEIRLQDYR 223
Query: 219 QQPFPDGQFDLVWSMESGEH 238
+GQFD + S+ EH
Sbjct: 224 DL---NGQFDRIVSVGMFEH 240
|
Length = 383 |
| >gnl|CDD|131799 TIGR02752, MenG_heptapren, demethylmenaquinone methyltransferase | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-06
Identities = 33/137 (24%), Positives = 55/137 (40%), Gaps = 12/137 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AK 183
+S +S H+ + ++T++ V + +DV CG S LA+ G
Sbjct: 22 NSVISFQRHKKWR----KDTMKRMNVQAG-----TSALDVCCGTADWSIALAEAVGPEGH 72
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
G+ S GL V G+A++ PF D FD V ++PD
Sbjct: 73 VIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYM 131
Query: 244 KFVSELARVTAPAGTII 260
+ + E+ RV P G ++
Sbjct: 132 QVLREMYRVVKPGGKVV 148
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 231 |
| >gnl|CDD|177877 PLN02233, PLN02233, ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAA--ARGL 206
VS K V+D+ CG G + L++K G+ K G+ S Q A + A+
Sbjct: 66 VSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSC 125
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+ + GDA PF D FD + +M G ++ D+ K + E+ RV P + I+ +
Sbjct: 126 YKNIEWIEGDATDLPFDDCYFDAI-TMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDF- 183
Query: 266 HRDLAPSEESLQPW 279
++ P S+Q W
Sbjct: 184 NKSTQPFTTSMQEW 197
|
Length = 261 |
| >gnl|CDD|110227 pfam01209, Ubie_methyltran, ubiE/COQ5 methyltransferase family | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 1e-05
Identities = 29/125 (23%), Positives = 53/125 (42%), Gaps = 3/125 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQV 214
KR +DV G G + L+ G+ K G+ ++ + A G + + F
Sbjct: 46 KRGNKFLDVAGGTGDWTFGLSDSAGSSGKVVGLDINENMLKEGEKKAKEEGKYN-IEFLQ 104
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
G+A + PF D FD+V + PD K + E RV P G ++ + + + +
Sbjct: 105 GNAEELPFEDDSFDIVTISFGLRNFPDYLKVLKEAFRVLKPGGRVVCLEFSKPENPLLSQ 164
Query: 275 SLQPW 279
+ + +
Sbjct: 165 AYELY 169
|
Length = 233 |
| >gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 8e-05
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 144 ETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQRANA 199
E L + K P V+D+G G I + LAK+ A+ + +SP A
Sbjct: 94 EELVEWALEALLLKEPLRVLDLGTGSGAIALA---LAKERPDAEVTAVDISP------EA 144
Query: 200 LA-----AARGLADKVSFQVGDALQQPFPDGQFDLV 230
LA A GL +V F GD +P P G+FDL+
Sbjct: 145 LAVARRNAKHGLGARVEFLQGDWF-EPLPGGRFDLI 179
|
Length = 275 |
| >gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 32/167 (19%), Positives = 54/167 (32%), Gaps = 41/167 (24%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P + ++D+G G G LA++ AK G+ + A+ A A L +++
Sbjct: 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVI 100
Query: 214 VGD--ALQQPFPDGQFDLVWS----MESGEHM-PDKSKFVSELARVTA------------ 254
D + FDL+ + G + + + +AR
Sbjct: 101 EADIKEFLKALVFASFDLIICNPPYFKQGSRLNENPLR---AIARHEITLDLEDLIRAAA 157
Query: 255 ----PAGTIIIVTWCHRDLAPSEESLQPWEQEL------LKKICDAY 291
P G + V HR E L + L K+I Y
Sbjct: 158 KLLKPGGRLAFV---HR-----PERLAEIIELLKSYNLEPKRIQFVY 196
|
Length = 248 |
| >gnl|CDD|236841 PRK11088, rrmA, 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 17/109 (15%)
Query: 159 PKNVVDVGCGIG-GSSRY---LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + L + + G+ +S V A + AA R +V+F V
Sbjct: 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKV-AIKY---AAKR--YPQVTFCV 139
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ + PF D D + + + P K ELARV P G +I VT
Sbjct: 140 ASSHRLPFADQSLDAIIRI----YAPCK---AEELARVVKPGGIVITVT 181
|
Length = 272 |
| >gnl|CDD|152582 pfam12147, Methyltransf_20, Putative methyltransferase | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQG---ITL---SPVQAQ 195
+EE LR+A + RP ++D+ G G RY+ Q I L SP+ +
Sbjct: 119 LEELLRYAIARLRASGRPVRILDIAAGHG---RYVLDALAKAPQRPDSILLRDYSPLNVE 175
Query: 196 RANALAAARGLADKVSFQVGDA 217
+ AL A RGL D F+ GDA
Sbjct: 176 QGRALIAERGLEDIARFEQGDA 197
|
This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with pfam00561. The family shows homology to methyltransferases. Length = 311 |
| >gnl|CDD|225174 COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 14/102 (13%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP-- 191
+ A ++ E L + ++ V+D+ CG+G LAK+ K G+ +SP
Sbjct: 274 NPAVAEKLYETALEWLELAGGER-----VLDLYCGVGTFGLPLAKRV-KKVHGVEISPEA 327
Query: 192 VQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLV 230
V+A + N AAA G+ D V F GDA + + D+V
Sbjct: 328 VEAAQEN--AAANGI-DNVEFIAGDAEEFTPAWWEGYKPDVV 366
|
Length = 432 |
| >gnl|CDD|235607 PRK05785, PRK05785, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
RPK V+DV G G S + K F + + N L DKV VG
Sbjct: 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAE------NMLKMNLVADDKV---VGS 100
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
PF D FD+V S + + K ++E RV
Sbjct: 101 FEALPFRDKSFDVVMSSFALHASDNIEKVIAEFTRV 136
|
Length = 226 |
| >gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.001
Identities = 28/80 (35%), Positives = 39/80 (48%), Gaps = 13/80 (16%)
Query: 157 KRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSP--VQAQRANALAAARGLADKV 210
K P V+D+G G I + LAK+ A+ + +SP + R N AAR D V
Sbjct: 86 KGPLRVLDLGTGSGAIALA---LAKERPDARVTAVDISPEALAVARKN---AARLGLDNV 139
Query: 211 SFQVGDALQQPFPDGQFDLV 230
F D +P P G+FDL+
Sbjct: 140 EFLQSDWF-EPLPGGKFDLI 158
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251 |
| >gnl|CDD|222313 pfam13679, Methyltransf_32, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.002
Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSR---YLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVS 211
VVD G G G YL K + GI ++ANA A G ++S
Sbjct: 24 TGCITVVDHGAGKGYLGFILYYLLFKRKYGVRVVGIDARAELVEKANARAQKLGFNKRMS 83
Query: 212 F---QVGDALQQPFPDGQFDLV 230
F + A D+V
Sbjct: 84 FLEGTIAGATVSARLPDPVDVV 105
|
This family appears to be a methyltransferase domain. Length = 143 |
| >gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.002
Identities = 28/125 (22%), Positives = 48/125 (38%), Gaps = 24/125 (19%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDAL 218
V++VG G G + AK G K G+ ++P + A A + + V D L
Sbjct: 25 DRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSD-L 82
Query: 219 QQPFPDGQFDLV-----WSMESGEHMPDK----------------SKFVSELARVTAPAG 257
+PF +FD++ + E D +F+ E+ R P G
Sbjct: 83 FEPFRGDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGG 142
Query: 258 TIIIV 262
I+++
Sbjct: 143 RILLL 147
|
Length = 188 |
| >gnl|CDD|178018 PLN02396, PLN02396, hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.002
Identities = 55/245 (22%), Positives = 101/245 (41%), Gaps = 40/245 (16%)
Query: 32 KRLSDIQSEMSACL---RPSLLPAPPPAPTWRSSLLFGVSSFSRKLITRASSTTSTTTMS 88
+RLS + + L R + SS + + K ++ ST++TT+++
Sbjct: 18 RRLSSSRIIPPSRLLHQRLFSTSDTDDSAASFSSSHPKMQTLEGKASNKSRSTSTTTSLN 77
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +A+F + + W G ++P + ++ I TL
Sbjct: 78 -------EDELAKFSAIADTWWHS-------EGPFKP-----LHQMNPTRLAFIRSTL-C 117
Query: 149 AGVSEDPT-KRP---KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
S+DP+ +P +D+GCG G S LA+ G T++ V A N + AR
Sbjct: 118 RHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLAR------MGATVTGVDAVDKN-VKIAR 170
Query: 205 GLAD------KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
AD + + A + +FD V S+E EH+ + ++F L+ +T P G
Sbjct: 171 LHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230
Query: 259 IIIVT 263
++ T
Sbjct: 231 TVLST 235
|
Length = 322 |
| >gnl|CDD|226607 COG4122, COG4122, Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 37/171 (21%), Positives = 71/171 (41%), Gaps = 28/171 (16%)
Query: 107 SSLWEDIWGDHMH-HGFYEPDSSVSVSDHRAAQV---RMIEETLRF----AGVSEDPTKR 158
++ ED++ D++ EP + ++ + A + + ET A
Sbjct: 6 PNMDEDLY-DYLEALIPGEPPALLAELEEFARENGVPIIDPETGALLRLLAR-----LSG 59
Query: 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV-G 215
PK ++++G IG S+ ++A + T+ +A+ A A G+ D++ + G
Sbjct: 60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGG 119
Query: 216 DALQQ--PFPDGQFDLVWSMESGEHMPDKSK---FVSELARVTAPAGTIII 261
DAL DG FDLV+ + DK+ ++ + P G I+
Sbjct: 120 DALDVLSRLLDGSFDLVF----IDA--DKADYPEYLERALPLLRPGGLIVA 164
|
Length = 219 |
| >gnl|CDD|184509 PRK14103, PRK14103, trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 0.003
Identities = 43/146 (29%), Positives = 67/146 (45%), Gaps = 34/146 (23%)
Query: 123 YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G 181
++PD ++ +DHR R + L + +R + VVD+GCG G +RYLA+++ G
Sbjct: 2 WDPDVYLAFADHRG---RPFYDLL-----ARVGAERARRVVDLGCGPGNLTRYLARRWPG 53
Query: 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLV-------WSM 233
A + + SP +AAAR V + GD +P PD D+V W
Sbjct: 54 AVIEALDSSP------EMVAAARE--RGVDARTGDVRDWKPKPD--TDVVVSNAALQWVP 103
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTI 259
E + + ++V EL AP I
Sbjct: 104 EHADLLV---RWVDEL----APGSWI 122
|
Length = 255 |
| >gnl|CDD|215270 PLN02490, PLN02490, MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.003
Identities = 57/229 (24%), Positives = 81/229 (35%), Gaps = 33/229 (14%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDAL 218
VVDVG G G ++ + K AK +T+ SP Q +A + GDA
Sbjct: 117 VVDVGGGTGFTTLGIVKHVDAK--NVTILDQSPHQLAKAKQKEPLKE----CKIIEGDAE 170
Query: 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT------WCHRDLA-- 270
PFP D S S E+ PD + + E RV G ++ W R A
Sbjct: 171 DLPFPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFFADV 230
Query: 271 ----PSEESLQPWEQEL------LKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320
P EE W + LK+I P W L+ S+ +K
Sbjct: 231 WMLFPKEEEYIEWFTKAGFKDVKLKRIG-----PKWYRGVRRHGLIMGCSVTGVKPAS-G 284
Query: 321 QNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLI 369
+ P + F+ LLR L TI + + I + K+ I
Sbjct: 285 DSPLQLGPKAEDVSKPVNPFSFLLRFILGTIAATYYVLVPIYMWLKDQI 333
|
Length = 340 |
| >gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 0.003
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 11/81 (13%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----LADK 209
P V+D+GCG G L + + ++ V A AL +AR +
Sbjct: 28 PKPLGGKVLDLGCGYG----VLGAALAKRSPDLEVTMVDIN-ARALESARANLAANGLEN 82
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
D G+FDL+
Sbjct: 83 GEVFWSDLYSAV-EPGKFDLI 102
|
This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| PLN02244 | 340 | tocopherol O-methyltransferase | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.97 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.97 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.97 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.96 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.96 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.95 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.94 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.92 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.91 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.91 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.91 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.89 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.89 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.89 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.88 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.88 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.86 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.86 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.86 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.85 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.84 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.84 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.83 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.83 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.82 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.82 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.81 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.8 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.8 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.8 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.79 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.79 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.79 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.79 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.77 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.76 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.76 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.76 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.74 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.74 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.73 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.72 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.72 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.7 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.7 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.69 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.68 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.67 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.66 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.65 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.65 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.65 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.65 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.64 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.64 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.64 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.63 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.63 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.63 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.62 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.62 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.61 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.61 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.6 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.6 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.6 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.59 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.59 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.58 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.57 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.56 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.55 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.55 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.54 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.54 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.54 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.53 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.5 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.5 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.5 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.49 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.49 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.48 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.46 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.46 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.46 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.46 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.45 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.45 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.44 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.44 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.43 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.43 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.43 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.42 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.42 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.42 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.42 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.41 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 99.41 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.4 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.39 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.39 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.38 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.37 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.37 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.37 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.35 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.34 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.34 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.33 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.32 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.31 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 99.3 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.28 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.28 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.28 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.27 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.27 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.26 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.25 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.24 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.24 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.24 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.23 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.22 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.21 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.2 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 99.2 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.2 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 99.18 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.18 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.17 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.14 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 99.14 | |
| PLN02476 | 278 | O-methyltransferase | 99.13 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.12 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.11 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.09 | |
| PLN02366 | 308 | spermidine synthase | 99.07 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.07 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.07 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.07 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 99.06 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.05 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 99.05 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 99.03 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.03 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 99.03 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.02 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 99.01 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.0 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.99 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 98.99 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.97 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.97 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.96 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.96 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.96 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.95 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.94 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.93 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.9 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.89 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.88 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.87 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.85 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.84 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.84 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.83 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.79 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.78 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.78 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.75 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.74 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.74 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.74 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.71 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.67 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.67 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.66 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.65 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 98.65 | |
| PLN02823 | 336 | spermine synthase | 98.64 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.64 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 98.61 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.57 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.57 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.55 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.55 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.55 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 98.54 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.52 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 98.52 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.51 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.5 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.48 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.48 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.46 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.45 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.42 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.42 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.4 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.38 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.38 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.37 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 98.37 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.36 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.35 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 98.31 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.3 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.29 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.27 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.27 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.26 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.22 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.22 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.18 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 98.16 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.13 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.12 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.12 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 98.06 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.05 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 98.04 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.02 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.01 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.01 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.0 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.95 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 97.94 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 97.94 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 97.94 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.84 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.83 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 97.76 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.74 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.72 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.72 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.68 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 97.66 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 97.65 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.65 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 97.63 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 97.61 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.57 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.51 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.49 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.49 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.35 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.34 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 97.31 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.24 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.22 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 97.2 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.16 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 97.11 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 97.04 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.02 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.88 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 96.79 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 96.78 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.67 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 96.66 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 96.6 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.5 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.48 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.47 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.34 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 96.12 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 96.0 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 95.79 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 95.78 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 95.76 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 95.76 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 95.54 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.49 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 95.48 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 95.45 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 95.37 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 95.34 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.32 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 95.23 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.23 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 95.12 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 95.08 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 94.99 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 94.77 | |
| PHA01634 | 156 | hypothetical protein | 94.7 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.64 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.62 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 94.62 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 94.61 | |
| PRK13699 | 227 | putative methylase; Provisional | 94.59 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.51 | |
| PF07279 | 218 | DUF1442: Protein of unknown function (DUF1442); In | 94.45 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 94.41 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.26 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 94.18 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 93.95 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 93.93 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.89 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 93.84 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.77 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 93.59 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 93.55 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 93.36 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.31 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 93.29 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 93.28 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 93.16 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 93.14 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 92.93 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.77 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.39 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 91.89 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.42 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 91.4 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 91.01 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 90.64 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 90.53 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 90.32 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 90.3 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 90.2 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 89.9 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 89.89 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 89.74 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 89.74 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 89.59 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 89.53 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 89.15 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.14 | |
| KOG1098 | 780 | consensus Putative SAM-dependent rRNA methyltransf | 89.08 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 88.87 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 88.79 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 88.51 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 88.09 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.98 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.75 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 87.67 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.36 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 87.33 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 87.26 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 87.16 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 87.07 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 86.98 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 86.75 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.73 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 86.66 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 86.38 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 86.28 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 86.26 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 86.14 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.07 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 86.06 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 85.9 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 85.79 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 85.73 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 85.57 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 85.47 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 85.32 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 85.29 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 85.25 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 85.13 | |
| cd08242 | 319 | MDR_like Medium chain dehydrogenases/reductase (MD | 85.05 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 84.97 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 84.84 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 84.84 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 84.79 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 84.77 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 84.64 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 84.62 | |
| cd08231 | 361 | MDR_TM0436_like Hypothetical enzyme TM0436 resembl | 84.47 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 84.26 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 84.12 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 84.1 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 84.06 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 83.95 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 83.62 | |
| cd08298 | 329 | CAD2 Cinnamyl alcohol dehydrogenases (CAD). These | 83.5 | |
| PLN02514 | 357 | cinnamyl-alcohol dehydrogenase | 83.39 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 83.15 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 83.13 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 83.08 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 82.92 | |
| KOG2912 | 419 | consensus Predicted DNA methylase [Function unknow | 82.91 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 82.68 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 82.44 | |
| PRK06940 | 275 | short chain dehydrogenase; Provisional | 81.57 | |
| PRK06128 | 300 | oxidoreductase; Provisional | 81.35 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 81.33 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 81.33 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 81.32 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 81.22 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 81.18 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 81.13 | |
| PF02719 | 293 | Polysacc_synt_2: Polysaccharide biosynthesis prote | 81.07 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 80.98 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.98 | |
| cd05281 | 341 | TDH Threonine dehydrogenase. L-threonine dehydroge | 80.97 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 80.62 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 80.26 |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=312.65 Aligned_cols=288 Identities=75% Similarity=1.268 Sum_probs=253.5
Q ss_pred hHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 016921 91 AARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (380)
Q Consensus 91 ~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG 170 (380)
....+.++|+.|||..++.|+.+|++++|+|||+... ....+..++.++++.+++.+++......++.+|||||||+|
T Consensus 53 ~~~~~~~~i~~~Yd~~~~~~e~~~g~~~h~g~~~~~~--~~~~~~~aq~~~~~~~l~~~~~~~~~~~~~~~VLDiGCG~G 130 (340)
T PLN02244 53 ATADLKEGIAEFYDESSGVWEDVWGEHMHHGYYDPGA--SRGDHRQAQIRMIEESLAWAGVPDDDEKRPKRIVDVGCGIG 130 (340)
T ss_pred chhhHHHHHHHHHccchHHHHHHhCCcceeeccCCCC--CcccHHHHHHHHHHHHHHhcCCCcccCCCCCeEEEecCCCC
Confidence 3467788999999999999999999999999998753 22348889999999999998873222235889999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHH
Q 016921 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (380)
Q Consensus 171 ~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~ 250 (380)
.++..+++.++++|+|+|+|+.|++.++++....++.+++.|+++|+.++++++++||+|++..+++|++|+..++++++
T Consensus 131 ~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~h~~d~~~~l~e~~ 210 (340)
T PLN02244 131 GSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGEHMPDKRKFVQELA 210 (340)
T ss_pred HHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchhccCCHHHHHHHHH
Confidence 99999999878899999999999999999998888877899999999999999999999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHHH
Q 016921 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAV 330 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~ 330 (380)
++|||||++++.++......+....+.......+..+...+..+.+.+.+++.++++++||+++++++|+..+.++|...
T Consensus 211 rvLkpGG~lvi~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~d~s~~v~~~~~~~ 290 (340)
T PLN02244 211 RVAAPGGRIIIVTWCHRDLEPGETSLKPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTEDWSEHVAPFWPAV 290 (340)
T ss_pred HHcCCCcEEEEEEecccccccccccCCHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEeeeCcHHHHHHHHHH
Confidence 99999999999998776655554555555556666666777777788999999999999999999999999999999998
Q ss_pred HHhhhhhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 331 IHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
......+.++.+.+..+|..++..+.+..+..++..|.++|.+++||||+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~kp~ 340 (340)
T PLN02244 291 IKSALTLKGLFGLLTSGWATIRGALVMPLMIKGFKKGLIKFAVITCRKPL 340 (340)
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCCceeeEEEEeCCC
Confidence 88888888888888899999998888888999999999999999999995
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-31 Score=230.64 Aligned_cols=208 Identities=22% Similarity=0.349 Sum_probs=172.6
Q ss_pred CChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEC
Q 016921 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166 (380)
Q Consensus 87 ~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiG 166 (380)
.+...++.+|++|+..||..|+. +|++.++.|.+.++..+. +. +|.+|||||
T Consensus 8 ~k~~~v~~vF~~ia~~YD~~n~~-------------------~S~g~~~~Wr~~~i~~~~----~~-----~g~~vLDva 59 (238)
T COG2226 8 EKQEKVQKVFDKVAKKYDLMNDL-------------------MSFGLHRLWRRALISLLG----IK-----PGDKVLDVA 59 (238)
T ss_pred ccHHHHHHHHHhhHHHHHhhccc-------------------ccCcchHHHHHHHHHhhC----CC-----CCCEEEEec
Confidence 34567999999999999999977 667778888888776543 22 389999999
Q ss_pred CCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHH
Q 016921 167 CGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKF 245 (380)
Q Consensus 167 cGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~ 245 (380)
||||.++..+++.. .++|+|+|+|+.|++.|+++..+.++.. ++|+++|++++||++++||+|++.++|++++|++++
T Consensus 60 ~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~d~~~a 138 (238)
T COG2226 60 CGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGLRNVTDIDKA 138 (238)
T ss_pred CCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehhhcCCCHHHH
Confidence 99999999999987 5799999999999999999998877754 999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhccC------------CCCCCCHHHHHHHHHhCCCc
Q 016921 246 VSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYY------------LPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 246 l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~------------~~~~~~~~~~~~ll~~aGf~ 312 (380)
|+|++|+|||||++++.++..+...+....+..+... .+..+..... +..+.+++++.++++++||.
T Consensus 139 L~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~ 218 (238)
T COG2226 139 LKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFE 218 (238)
T ss_pred HHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCce
Confidence 9999999999999999999877665554445545444 3333222221 12368999999999999999
Q ss_pred EEEEEecCCCc
Q 016921 313 DIKAEDWSQNV 323 (380)
Q Consensus 313 ~v~~~~~~~~~ 323 (380)
.+..+.+...+
T Consensus 219 ~i~~~~~~~G~ 229 (238)
T COG2226 219 EVRYENLTFGI 229 (238)
T ss_pred EEeeEeeeeee
Confidence 99877776554
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-30 Score=222.07 Aligned_cols=215 Identities=17% Similarity=0.247 Sum_probs=175.1
Q ss_pred cCCcccccCChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016921 79 SSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158 (380)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (380)
...+..+..++..+..+|++++.+||.+|+. ++++.||.|+...+.. +... +
T Consensus 49 gf~tV~e~eke~~V~~vF~~vA~~YD~mND~-------------------mSlGiHRlWKd~~v~~----L~p~-----~ 100 (296)
T KOG1540|consen 49 GFKTVRESEKERLVHHVFESVAKKYDIMNDA-------------------MSLGIHRLWKDMFVSK----LGPG-----K 100 (296)
T ss_pred cccccchhhhhhHHHHHHHHHHHHHHHHHHH-------------------hhcchhHHHHHHhhhc----cCCC-----C
Confidence 3444555667778999999999999999988 7778899886665543 3333 3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------CEEEEEeCCHHHHHHHHHHHHHcCCCCC--eEEEEcCCCCCCCCCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-G------AKCQGITLSPVQAQRANALAAARGLADK--VSFQVGDALQQPFPDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~~v~giD~s~~~~~~a~~~~~~~~~~~~--v~~~~~d~~~~~~~~~~fD~ 229 (380)
+.++||++||||..+..+.+.. . .+|++.|+||.|++.++++..+.++..+ +.|+.+|++++||++++||+
T Consensus 101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~ 180 (296)
T KOG1540|consen 101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDA 180 (296)
T ss_pred CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCccee
Confidence 8999999999999999999876 2 6899999999999999999988777554 99999999999999999999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc------------cCCCCCC
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA------------YYLPAWC 297 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~ 297 (380)
+++.+.|.+++++++++++++|+|||||++.+.+|...++.+....++.+..+.+..+... ..+.++.
T Consensus 181 yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp 260 (296)
T KOG1540|consen 181 YTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFP 260 (296)
T ss_pred EEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCC
Confidence 9999999999999999999999999999999999988776555555555554444322211 1345678
Q ss_pred CHHHHHHHHHhCCCcEEE-EEecCC
Q 016921 298 STADYVKLLQSLSLEDIK-AEDWSQ 321 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~-~~~~~~ 321 (380)
+.+++..++++|||..+. .+.+..
T Consensus 261 ~qe~f~~miedaGF~~~~~ye~lt~ 285 (296)
T KOG1540|consen 261 PQEEFASMIEDAGFSSVNGYENLTF 285 (296)
T ss_pred CHHHHHHHHHHcCCcccccccccee
Confidence 999999999999999986 554443
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-28 Score=217.74 Aligned_cols=264 Identities=21% Similarity=0.242 Sum_probs=202.1
Q ss_pred HHHHHHHHHhccchhhHHHhhccccc--ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 94 ELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...++|+.|||..+++|..++++.+. ++||..+..+ +.+++...++.+++++.+++ |.+|||||||+|.
T Consensus 15 ~~~~~i~~HYDl~n~fy~l~Ld~~~~Yscayf~~~~~t----L~eAQ~~k~~~~~~kl~L~~-----G~~lLDiGCGWG~ 85 (283)
T COG2230 15 RAAENIQAHYDLSNDFYRLFLDPSMTYSCAYFEDPDMT----LEEAQRAKLDLILEKLGLKP-----GMTLLDIGCGWGG 85 (283)
T ss_pred chhhhhhhHhhcchHHHHHhcCCCCceeeEEeCCCCCC----hHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCChhH
Confidence 55667999999999999999998665 5899877643 78899999999999999886 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (380)
+++.+|++++.+|+|+++|++|.+.+++++.+.|+..+++++..|..+++ +.||.|++.++++|+.. ...+++.+
T Consensus 86 l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~---e~fDrIvSvgmfEhvg~~~~~~ff~~~ 162 (283)
T COG2230 86 LAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE---EPFDRIVSVGMFEHVGKENYDDFFKKV 162 (283)
T ss_pred HHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc---cccceeeehhhHHHhCcccHHHHHHHH
Confidence 99999999999999999999999999999999999889999999998875 45999999999999965 89999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHH
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~ 329 (380)
+++|+|||.+++..+........ ....| ....+.++... ++..++.+..+++||++.+.+.+..+.......
T Consensus 163 ~~~L~~~G~~llh~I~~~~~~~~--~~~~~---i~~yiFPgG~l---Ps~~~i~~~~~~~~~~v~~~~~~~~hYa~Tl~~ 234 (283)
T COG2230 163 YALLKPGGRMLLHSITGPDQEFR--RFPDF---IDKYIFPGGEL---PSISEILELASEAGFVVLDVESLRPHYARTLRL 234 (283)
T ss_pred HhhcCCCceEEEEEecCCCcccc--cchHH---HHHhCCCCCcC---CCHHHHHHHHHhcCcEEehHhhhcHHHHHHHHH
Confidence 99999999999998765543211 12222 22234444443 467899999999999999988888776544333
Q ss_pred HHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 330 VIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 330 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
+....... ..+... .+..........+.....+++.+......++..|
T Consensus 235 W~~~f~~~~~~a~~~-~~e~~~r~w~~yl~~~~~~Fr~~~~~~~q~~~~k 283 (283)
T COG2230 235 WRERFEANRDEAIAL-YDERFYRMWELYLAACAAAFRAGYIDVFQFTLTK 283 (283)
T ss_pred HHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhccCCceEEEEEeeC
Confidence 33333221 111111 1111112233345556677888888777776654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-28 Score=223.69 Aligned_cols=221 Identities=26% Similarity=0.419 Sum_probs=158.1
Q ss_pred HHHHHHHHHhccchhhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 94 ELKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...++|+.|||..+++|..++++.+++ +||...... +..++.++++.+++++.+++ +.+|||||||.|.
T Consensus 5 ~~~~~i~~hYDl~ndfy~l~Ld~~m~YS~~~~~~~~~~----Le~AQ~~k~~~~~~~~~l~~-----G~~vLDiGcGwG~ 75 (273)
T PF02353_consen 5 QSRENISAHYDLGNDFYRLFLDPTMKYSCAYFDEGDDT----LEEAQERKLDLLCEKLGLKP-----GDRVLDIGCGWGG 75 (273)
T ss_dssp --HHHHHHHHTS-HHHHTTTS-TT---S----SSTT------HHHHHHHHHHHHHTTTT--T-----T-EEEEES-TTSH
T ss_pred hHHHHHHHHcCCcHHHHHHhcCCCCCCCCeecCCchhh----HHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCccH
Confidence 456779999999999999999998885 699875433 88999999999999998876 9999999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC--CCHHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSEL 249 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~ 249 (380)
++..+++++|++|+|+++|+++.+.+++++.+.|+++++.+...|..+++ .+||.|++..+++|+ .+...+++++
T Consensus 76 ~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~---~~fD~IvSi~~~Ehvg~~~~~~~f~~~ 152 (273)
T PF02353_consen 76 LAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP---GKFDRIVSIEMFEHVGRKNYPAFFRKI 152 (273)
T ss_dssp HHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG------S-SEEEEESEGGGTCGGGHHHHHHHH
T ss_pred HHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC---CCCCEEEEEechhhcChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999998875 399999999999999 4678999999
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCcc-ccchHHHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCch
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEE-SLQPWEQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~ 327 (380)
.++|||||.+++..+.......... ... ..++. .++.... .++.+++...++++||++++++++..+.....
T Consensus 153 ~~~LkpgG~~~lq~i~~~~~~~~~~~~~~---~~~i~kyiFPgg~---lps~~~~~~~~~~~~l~v~~~~~~~~hY~~Tl 226 (273)
T PF02353_consen 153 SRLLKPGGRLVLQTITHRDPPYHAERRSS---SDFIRKYIFPGGY---LPSLSEILRAAEDAGLEVEDVENLGRHYARTL 226 (273)
T ss_dssp HHHSETTEEEEEEEEEE--HHHHHCTTCC---CHHHHHHTSTTS------BHHHHHHHHHHTT-EEEEEEE-HHHHHHHH
T ss_pred HHhcCCCcEEEEEecccccccchhhcCCC---ceEEEEeeCCCCC---CCCHHHHHHHHhcCCEEEEEEEEcCcCHHHHH
Confidence 9999999999998776443211110 000 02222 2233333 34788999999999999999998887766544
Q ss_pred HHHHH
Q 016921 328 PAVIH 332 (380)
Q Consensus 328 ~~~~~ 332 (380)
..+..
T Consensus 227 ~~W~~ 231 (273)
T PF02353_consen 227 RAWRE 231 (273)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.8e-30 Score=228.50 Aligned_cols=208 Identities=25% Similarity=0.421 Sum_probs=94.7
Q ss_pred CChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEEC
Q 016921 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166 (380)
Q Consensus 87 ~~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiG 166 (380)
.+.+.+..+|+.|+..||..|+. .+++.++.|....++. .... ++.+|||+|
T Consensus 4 ~k~~~v~~~Fd~ia~~YD~~n~~-------------------ls~g~~~~wr~~~~~~----~~~~-----~g~~vLDv~ 55 (233)
T PF01209_consen 4 AKEQYVRKMFDRIAPRYDRMNDL-------------------LSFGQDRRWRRKLIKL----LGLR-----PGDRVLDVA 55 (233)
T ss_dssp ----------------------------------------------------SHHHHH----HT-------S--EEEEET
T ss_pred cHHHHHHHHHHHHHHHhCCCccc-------------------cCCcHHHHHHHHHHhc----cCCC-----CCCEEEEeC
Confidence 35567899999999999998876 3333345555544332 2333 388999999
Q ss_pred CCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHH
Q 016921 167 CGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSK 244 (380)
Q Consensus 167 cGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 244 (380)
||||.++..+++.. ..+|+|+|+|+.|++.|+++....+.. +++++++|++++|+++++||+|++.+++++++|+.+
T Consensus 56 ~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~fglrn~~d~~~ 134 (233)
T PF01209_consen 56 CGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCSFGLRNFPDRER 134 (233)
T ss_dssp -TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEES-GGG-SSHHH
T ss_pred CChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHHhhHHhhCCHHH
Confidence 99999999999876 479999999999999999999887764 899999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh-------hcc-----CCCCCCCHHHHHHHHHhCCCc
Q 016921 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-------DAY-----YLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 245 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~~~ll~~aGf~ 312 (380)
+++|++|+|||||++++.+++.+........+.-+....+..+. ..+ .+..+.+.+++.++|+++||+
T Consensus 135 ~l~E~~RVLkPGG~l~ile~~~p~~~~~~~~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~ 214 (233)
T PF01209_consen 135 ALREMYRVLKPGGRLVILEFSKPRNPLLRALYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFK 214 (233)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEB-SSHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHcCCCeEEEEeeccCCCCchhhceeeeeecccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999998765432221111111111111111 111 223477899999999999999
Q ss_pred EEEEEecCCCc
Q 016921 313 DIKAEDWSQNV 323 (380)
Q Consensus 313 ~v~~~~~~~~~ 323 (380)
.++.+.+...+
T Consensus 215 ~v~~~~~~~G~ 225 (233)
T PF01209_consen 215 NVEYRPLTFGI 225 (233)
T ss_dssp -----------
T ss_pred ccccccccccc
Confidence 99887766554
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=209.13 Aligned_cols=241 Identities=21% Similarity=0.387 Sum_probs=174.2
Q ss_pred cchhhHHHhhcc-cccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE
Q 016921 105 ESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183 (380)
Q Consensus 105 ~~~~~y~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~ 183 (380)
.....|+.++|. .+|.+ . ......++..+.+.+ +.+|||||||+|..+..+++..+++
T Consensus 19 ~~~~~~e~~~g~~~~~~g-----g-----------~~~~~~~l~~l~l~~-----~~~VLDiGcG~G~~a~~la~~~~~~ 77 (263)
T PTZ00098 19 EGIKAYEFIFGEDYISSG-----G-----------IEATTKILSDIELNE-----NSKVLDIGSGLGGGCKYINEKYGAH 77 (263)
T ss_pred ccchhHHHHhCCCCCCCC-----c-----------hHHHHHHHHhCCCCC-----CCEEEEEcCCCChhhHHHHhhcCCE
Confidence 456788988885 33432 1 113456667666654 8999999999999999998876789
Q ss_pred EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEE
Q 016921 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 184 v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~ 261 (380)
|+|+|+|+.|++.|+++... ..++.+..+|+.+.++++++||+|++..+++|++ ++..++++++++|||||.+++
T Consensus 78 v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi 154 (263)
T PTZ00098 78 VHGVDICEKMVNIAKLRNSD---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLI 154 (263)
T ss_pred EEEEECCHHHHHHHHHHcCc---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 99999999999999987643 2579999999998888889999999999999986 789999999999999999999
Q ss_pred EeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhhh-hh
Q 016921 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWK-GF 340 (380)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~ 340 (380)
.++....... ... . +....... ...+.+.+++.++|+++||++++.++.+..+..++..........+ .+
T Consensus 155 ~d~~~~~~~~----~~~---~-~~~~~~~~-~~~~~~~~~~~~~l~~aGF~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~ 225 (263)
T PTZ00098 155 TDYCADKIEN----WDE---E-FKAYIKKR-KYTLIPIQEYGDLIKSCNFQNVVAKDISDYWLELLQVELKKLEEKKEEF 225 (263)
T ss_pred EEeccccccC----cHH---H-HHHHHHhc-CCCCCCHHHHHHHHHHCCCCeeeEEeCcHHHHHHHHHHHHHHHHhHHHH
Confidence 9876543211 111 1 11111111 1235689999999999999999999888766555544433332221 11
Q ss_pred HHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 341 TSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
...+ ..............+.+..+.|...|+++.|+||
T Consensus 226 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~wg~~~~~~~ 263 (263)
T PTZ00098 226 LKLY-SEKEYNSLKDGWTRKIKDTKRKLQKWGYFKAQKM 263 (263)
T ss_pred HHhc-CHHHHHHHHHHHHHHHHHhhccccccceEeecCC
Confidence 1110 1111133444567788888999999999999996
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=7e-25 Score=199.73 Aligned_cols=165 Identities=21% Similarity=0.290 Sum_probs=125.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHH--cCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAA--RGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
++.+|||||||+|.++..+++.. ..+|+|+|+|++|++.|+++... .....++.++++|++++|+++++||+|++.
T Consensus 73 ~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~ 152 (261)
T PLN02233 73 MGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMG 152 (261)
T ss_pred CCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEe
Confidence 38899999999999999998875 36999999999999999887542 223357999999999999999999999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-HHHHhhc-----------cCCCCCCCHHH
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-LKKICDA-----------YYLPAWCSTAD 301 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-----------~~~~~~~~~~~ 301 (380)
++++|++++..++++++|+|||||++++.++....... ...+..+.... +...... ..+..+.++++
T Consensus 153 ~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s~~~f~s~~e 231 (261)
T PLN02233 153 YGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPF-TTSMQEWMIDNVVVPVATGYGLAKEYEYLKSSINEYLTGEE 231 (261)
T ss_pred cccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHH-HHHHHHHHHhhhhhHHHHHhCChHHHHHHHHHHHhcCCHHH
Confidence 99999999999999999999999999999987543211 11111111110 0001000 01124679999
Q ss_pred HHHHHHhCCCcEEEEEecCCCc
Q 016921 302 YVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
+.++|+++||+++....+...+
T Consensus 232 l~~ll~~aGF~~~~~~~~~~g~ 253 (261)
T PLN02233 232 LEKLALEAGFSSAKHYEISGGL 253 (261)
T ss_pred HHHHHHHCCCCEEEEEEcCCCe
Confidence 9999999999999887765443
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=197.98 Aligned_cols=259 Identities=19% Similarity=0.225 Sum_probs=184.7
Q ss_pred HHHHHHHHHHhccchhhHHHhhccccc--ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcC
Q 016921 93 RELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170 (380)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG 170 (380)
....++|+.|||..+++|..++++.++ ++||.... .+..++.+.++.+++.+.+++ +.+|||||||+|
T Consensus 110 ~~~~~~i~~hYd~~n~~y~l~ld~~m~ys~g~~~~~~-----~L~~Aq~~k~~~l~~~l~l~~-----g~rVLDIGcG~G 179 (383)
T PRK11705 110 KRAWIVGKEHYDLGNDLFEAMLDPRMQYSCGYWKDAD-----TLEEAQEAKLDLICRKLQLKP-----GMRVLDIGCGWG 179 (383)
T ss_pred hhHHHhhhhhcCCcHHHHHHhcCCCCcccccccCCCC-----CHHHHHHHHHHHHHHHhCCCC-----CCEEEEeCCCcc
Confidence 456778999999999999999998765 58886432 377888899999999887765 899999999999
Q ss_pred hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHH
Q 016921 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSE 248 (380)
Q Consensus 171 ~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~ 248 (380)
.++..+++..+++|+|+|+|++|++.|+++.. ++ ++++...|+.++ +++||.|++..+++|+.+ ...++++
T Consensus 180 ~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~l---~~~fD~Ivs~~~~ehvg~~~~~~~l~~ 252 (383)
T PRK11705 180 GLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRDL---NGQFDRIVSVGMFEHVGPKNYRTYFEV 252 (383)
T ss_pred HHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhhc---CCCCCEEEEeCchhhCChHHHHHHHHH
Confidence 99999998778899999999999999999874 32 488888898765 478999999999999954 5789999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchH
Q 016921 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (380)
Q Consensus 249 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 328 (380)
+.++|||||.+++.++......... ..+... .+.... ...+.+++...++ .||++.+++.+..++.....
T Consensus 253 i~r~LkpGG~lvl~~i~~~~~~~~~---~~~i~~---yifp~g---~lps~~~i~~~~~-~~~~v~d~~~~~~hy~~TL~ 322 (383)
T PRK11705 253 VRRCLKPDGLFLLHTIGSNKTDTNV---DPWINK---YIFPNG---CLPSVRQIAQASE-GLFVMEDWHNFGADYDRTLM 322 (383)
T ss_pred HHHHcCCCcEEEEEEccCCCCCCCC---CCCcee---eecCCC---cCCCHHHHHHHHH-CCcEEEEEecChhhHHHHHH
Confidence 9999999999999887544322111 111100 011111 1347788888766 59999998888877654433
Q ss_pred HHHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 329 AVIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 329 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
.+....... ..+.......+ .......+.....+++.|.+..+.+++.||
T Consensus 323 ~W~~~f~~~~~~~~~~~~~~~-~r~w~~yl~~~~~~F~~~~~~~~q~~~~~~ 373 (383)
T PRK11705 323 AWHENFEAAWPELADNYSERF-YRMWRYYLLSCAGAFRARDIQLWQVVFSPR 373 (383)
T ss_pred HHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHHhCCCceEEEEEEEeC
Confidence 333222211 11211111111 011222344556778888888888888885
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-23 Score=202.94 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=156.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
.+.+++.+.+. ++.+|||||||+|..+..+++..+++|+|+|+|+.+++.|+++.. +...++.|.++|+...+
T Consensus 255 te~l~~~~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~~~ 327 (475)
T PLN02336 255 TKEFVDKLDLK-----PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTKKT 327 (475)
T ss_pred HHHHHHhcCCC-----CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCcccCC
Confidence 34455555443 378999999999999999998778899999999999999988764 33457999999999988
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++++..++++++++|||||.+++.++......+.. .....+.. .+ ....+.++
T Consensus 328 ~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~-----~~~~~~~~----~g-~~~~~~~~ 397 (475)
T PLN02336 328 YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSP-----EFAEYIKQ----RG-YDLHDVQA 397 (475)
T ss_pred CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH-----HHHHHHHh----cC-CCCCCHHH
Confidence 8888999999999999999999999999999999999999987654322211 11111211 11 12468899
Q ss_pred HHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhh-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTW-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
+.++++++||+++.+++++..+..+........... ..+... .................+.+..+..+|++++|||.
T Consensus 398 ~~~~l~~aGF~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~wg~~~a~k~ 475 (475)
T PLN02336 398 YGQMLKDAGFDDVIAEDRTDQFLQVLQRELDAVEKEKDEFISD-FSEEDYNDIVGGWKAKLVRSSSGEQKWGLFIAKKK 475 (475)
T ss_pred HHHHHHHCCCeeeeeecchHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHhHHHHHhhhcCCceeeEEEEEecC
Confidence 999999999999999888876543332222221111 111110 01111122233344455666678899999999984
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=187.73 Aligned_cols=157 Identities=20% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +++|+|+|+++.+++.|+++....+...+++++++|++++++++++||+|++.++++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~-g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLe 209 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARM-GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIE 209 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHH
Confidence 4779999999999999999875 889999999999999999887655544589999999999887788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-hH-HHHHHHHHh-hc-cCCCCCCCHHHHHHHHHhCCCcE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-PW-EQELLKKIC-DA-YYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~-~~-~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
|+.|+..+++++.++|||||.+++.++..... .+. .. ....+..+. .. .....+++++++..+|+++||++
T Consensus 210 Hv~d~~~~L~~l~r~LkPGG~liist~nr~~~-----~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i 284 (322)
T PLN02396 210 HVANPAEFCKSLSALTIPNGATVLSTINRTMR-----AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDV 284 (322)
T ss_pred hcCCHHHHHHHHHHHcCCCcEEEEEECCcCHH-----HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeE
Confidence 99999999999999999999999998542210 000 00 001111111 11 11224689999999999999999
Q ss_pred EEEEecC
Q 016921 314 IKAEDWS 320 (380)
Q Consensus 314 v~~~~~~ 320 (380)
+++..+.
T Consensus 285 ~~~~G~~ 291 (322)
T PLN02396 285 KEMAGFV 291 (322)
T ss_pred EEEeeeE
Confidence 9886544
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=183.00 Aligned_cols=201 Identities=19% Similarity=0.304 Sum_probs=147.9
Q ss_pred hhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 016921 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (380)
Q Consensus 89 ~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG 168 (380)
...+..+++.++.+||..+... ++.....+. +.++..+.+.+ +.+|||+|||
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~-------------------~~~~~~~~~----~~~l~~l~~~~-----~~~vLDiGcG 55 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVI-------------------SFQRHKKWR----KDTMKRMNVQA-----GTSALDVCCG 55 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHh-------------------cCCchHHHH----HHHHHhcCCCC-----CCEEEEeCCC
Confidence 4557788888888888765432 111122232 33444555443 8899999999
Q ss_pred cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHH
Q 016921 169 IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (380)
Q Consensus 169 tG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 246 (380)
+|.++..+++.. +.+|+|+|+++.+++.++++....++ ++++++.+|+.++++++++||+|++..+++|++++.+++
T Consensus 56 ~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 134 (231)
T TIGR02752 56 TADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDNSFDYVTIGFGLRNVPDYMQVL 134 (231)
T ss_pred cCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCCCccEEEEecccccCCCHHHHH
Confidence 999999999875 46999999999999999999877666 589999999999888889999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-------HHHHh---------hccCCCCCCCHHHHHHHHHhCC
Q 016921 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-------LKKIC---------DAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 247 ~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~---------~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+++.++|+|||.+++.+...++.. .+....... +.... .......+++.+++.++|+++|
T Consensus 135 ~~~~~~Lk~gG~l~~~~~~~~~~~----~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aG 210 (231)
T TIGR02752 135 REMYRVVKPGGKVVCLETSQPTIP----GFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPGMDELAEMFQEAG 210 (231)
T ss_pred HHHHHHcCcCeEEEEEECCCCCCh----HHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 999999999999999886543321 111110000 00000 0001224578999999999999
Q ss_pred CcEEEEEecCCC
Q 016921 311 LEDIKAEDWSQN 322 (380)
Q Consensus 311 f~~v~~~~~~~~ 322 (380)
|++++++.+...
T Consensus 211 f~~~~~~~~~~g 222 (231)
T TIGR02752 211 FKDVEVKSYTGG 222 (231)
T ss_pred CCeeEEEEcccc
Confidence 999998877643
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=175.97 Aligned_cols=198 Identities=18% Similarity=0.204 Sum_probs=138.9
Q ss_pred ChhhHHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 016921 88 SDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (380)
Q Consensus 88 ~~~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGc 167 (380)
+...+..+|+.+++.||..+.. .+.+....|...+++.+..... ++.+||||||
T Consensus 7 ~~~~v~~~f~~iA~~YD~~n~~-------------------~s~g~~~~wr~~~~~~l~~~~~-------~~~~VLDlGc 60 (226)
T PRK05785 7 TWEELQEAYNKIPKAYDRANRF-------------------ISFNQDVRWRAELVKTILKYCG-------RPKKVLDVAA 60 (226)
T ss_pred cHHHHHHHHHhhhHHHHHhhhh-------------------ccCCCcHHHHHHHHHHHHHhcC-------CCCeEEEEcC
Confidence 3456788999999999987654 2222244565656665544322 2679999999
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHH
Q 016921 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247 (380)
Q Consensus 168 GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~ 247 (380)
|||.++..+++..+.+|+|+|+|++|++.|+++ ..++++|++++|+++++||+|++.++++|++|++++++
T Consensus 61 GtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~---------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~~~l~ 131 (226)
T PRK05785 61 GKGELSYHFKKVFKYYVVALDYAENMLKMNLVA---------DDKVVGSFEALPFRDKSFDVVMSSFALHASDNIEKVIA 131 (226)
T ss_pred CCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc---------cceEEechhhCCCCCCCEEEEEecChhhccCCHHHHHH
Confidence 999999999987567999999999999998763 23578999999999999999999999999999999999
Q ss_pred HHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 248 ~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
+++|+|||. +++.++..+........+.-+....+..+.... .+..+.+++++.++++++| ..++
T Consensus 132 e~~RvLkp~--~~ile~~~p~~~~~~~~~~~y~~~~~P~~~~~~~~~~~~Y~yl~~si~~f~~~~~~~~~~~~~~-~~~~ 208 (226)
T PRK05785 132 EFTRVSRKQ--VGFIAMGKPDNVIKRKYLSFYLRYIMPYIACLAGAKCRDYKYIYYIYERLPTNSFHREIFEKYA-DIKV 208 (226)
T ss_pred HHHHHhcCc--eEEEEeCCCCcHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCHHHHHHHHHHHh-CceE
Confidence 999999993 334454433221111111112212222111111 1123678999999999974 6677
Q ss_pred EEecCCCc
Q 016921 316 AEDWSQNV 323 (380)
Q Consensus 316 ~~~~~~~~ 323 (380)
.+.++..+
T Consensus 209 ~~~~~~G~ 216 (226)
T PRK05785 209 YEERGLGL 216 (226)
T ss_pred EEEccccE
Confidence 77776554
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=170.21 Aligned_cols=226 Identities=25% Similarity=0.322 Sum_probs=153.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+.++..+.+.+ +.+|||+|||+|.++..+++.+ ..+++|+|+++.+++.++++.. ....++.+...|+...
T Consensus 9 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 9 ARTFELLAVQP-----GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEecccccC
Confidence 34455555544 8899999999999999999876 4799999999999999998732 2335799999999988
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++++++||+|++..+++|+.++..+++++.++|||||.+++.+....... ............+..+... ........
T Consensus 82 ~~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 158 (241)
T PRK08317 82 PFPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLV-WHSGDRALMRKILNFWSDH--FADPWLGR 158 (241)
T ss_pred CCCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCcee-ecCCChHHHHHHHHHHHhc--CCCCcHHH
Confidence 88889999999999999999999999999999999999999885432211 0111111222222222221 12235677
Q ss_pred HHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhhhhhHHH-HhhchhhhhhhhhHHHHHHHHhcC----ceEEEEEE
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSL-LRTGLKTIKGALAMPLMIEGYQKN----LIKFAIIT 375 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vv~ 375 (380)
.+.++|+++||++++++.+......+........+. ...... ....+...+.......+++....+ .+..++++
T Consensus 159 ~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 237 (241)
T PRK08317 159 RLPGLFREAGLTDIEVEPYTLIETDLKEADKGFGLI-RAARRAVEAGGISADEADAWLADLAQLARAGEFFFSVTGFLVV 237 (241)
T ss_pred HHHHHHHHcCCCceeEEEEEEeccCcchhhHHHHHH-HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEEEE
Confidence 899999999999988876654443332211110000 001111 023344444555555666556666 57777999
Q ss_pred EecC
Q 016921 376 CRKP 379 (380)
Q Consensus 376 arKP 379 (380)
||||
T Consensus 238 ~~kp 241 (241)
T PRK08317 238 GRKP 241 (241)
T ss_pred EeCC
Confidence 9998
|
|
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-22 Score=182.66 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=127.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+-+..++..++ . ++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|+++....++..++.++++|+.
T Consensus 31 ~~~~~~~l~~l~-~-----~~~~vLDiGcG~G~~a~~la~~-g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~ 103 (255)
T PRK11036 31 WQDLDRLLAELP-P-----RPLRVLDAGGGEGQTAIKLAEL-GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQ 103 (255)
T ss_pred HHHHHHHHHhcC-C-----CCCEEEEeCCCchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHH
Confidence 334556666654 2 3689999999999999999987 88999999999999999999988888778999999998
Q ss_pred CCC-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh---hccCC-
Q 016921 219 QQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC---DAYYL- 293 (380)
Q Consensus 219 ~~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~- 293 (380)
+++ +.+++||+|++..+++|+.++..+++++.++|||||.+++..+..............+. ....... .....
T Consensus 104 ~l~~~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p 182 (255)
T PRK11036 104 DIAQHLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAGNFD-YVQAGMPKRKKRTLSP 182 (255)
T ss_pred HHhhhcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHccChH-HHHhcCccccccCCCC
Confidence 763 55789999999999999999999999999999999999988754321100000000000 0000000 00011
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 294 PAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 294 ~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....+++++.++|+++||+++....
T Consensus 183 ~~~~~~~~l~~~l~~aGf~~~~~~g 207 (255)
T PRK11036 183 DYPLDPEQVYQWLEEAGWQIMGKTG 207 (255)
T ss_pred CCCCCHHHHHHHHHHCCCeEeeeee
Confidence 1246899999999999999986554
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.1e-21 Score=173.52 Aligned_cols=201 Identities=23% Similarity=0.354 Sum_probs=148.3
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (380)
+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.+++++...++..++.++..|+...+++ ++||+|++..+++|+
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~~l~~~ 80 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFEVIHHI 80 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCC-CCCCEeehHHHHHhC
Confidence 69999999999999999987 6899999999999999999998888888999999999776654 589999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
.++..+++++.++|||||.+++.++.......... ........+.+++.++++++||++++..++
T Consensus 81 ~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~---------------~~~~~~~~s~~~~~~~l~~~Gf~~~~~~~~ 145 (224)
T smart00828 81 KDKMDLFSNISRHLKDGGHLVLADFIANLLSAIEH---------------EETTSYLVTREEWAELLARNNLRVVEGVDA 145 (224)
T ss_pred CCHHHHHHHHHHHcCCCCEEEEEEcccccCccccc---------------cccccccCCHHHHHHHHHHCCCeEEEeEEC
Confidence 99999999999999999999999864322111000 000011357899999999999999999998
Q ss_pred CCCcCCc-hHHHHHhhhhhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 320 SQNVAPF-WPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 320 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
..++..+ |........ ..+... .......+.-.....+.++++++.+.|++++++|+.
T Consensus 146 ~~~~~~~l~~~~f~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~ 204 (224)
T smart00828 146 SLEIANFLYDPGFEDNL--ERLYQD-DLDEVTKRHFRGIANLGKLLEKGLASYALLIVQKDE 204 (224)
T ss_pred cHhHhhhccChhHHHHH--HHhccc-cchHHHHHHHhhHHHHHHHHHhchHhhEEEEEeccc
Confidence 8876543 222221111 111110 000001222223345556789999999999999973
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-21 Score=174.79 Aligned_cols=162 Identities=25% Similarity=0.333 Sum_probs=117.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+.+..++..+.... +.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|++ .++.++++|++
T Consensus 16 ~~~~~ll~~l~~~~-----~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~--------~~~~~~~~d~~ 82 (255)
T PRK14103 16 RPFYDLLARVGAER-----ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE--------RGVDARTGDVR 82 (255)
T ss_pred CHHHHHHHhCCCCC-----CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh--------cCCcEEEcChh
Confidence 35566777766544 8899999999999999999886 6799999999999999875 25889999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH-HHHHHHhhcc--C-CC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ-ELLKKICDAY--Y-LP 294 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~-~~ 294 (380)
+++ ++++||+|++..+++|++++..++++++++|||||.+++..+.... .+.......... ..+....... . ..
T Consensus 83 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 160 (255)
T PRK14103 83 DWK-PKPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFD-APSHAAVRALARREPWAKLLRDIPFRVGA 160 (255)
T ss_pred hCC-CCCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcC-ChhHHHHHHHhccCchhHHhcccccccCc
Confidence 874 5689999999999999999999999999999999999987543111 011000000000 0001111111 0 11
Q ss_pred CCCCHHHHHHHHHhCCCcEEEE
Q 016921 295 AWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.+.+++++.++|+++||++...
T Consensus 161 ~~~~~~~~~~~l~~aGf~v~~~ 182 (255)
T PRK14103 161 VVQTPAGYAELLTDAGCKVDAW 182 (255)
T ss_pred CCCCHHHHHHHHHhCCCeEEEE
Confidence 3468999999999999985443
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.2e-20 Score=166.65 Aligned_cols=165 Identities=24% Similarity=0.396 Sum_probs=125.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+|||+|||+|.++..+++..+ .+++|+|+++.+++.+++++...++..++.++.+|+.+.+++.++||+|++..++
T Consensus 52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~l 131 (239)
T PRK00216 52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFGL 131 (239)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEeccc
Confidence 78999999999999999998863 8999999999999999998876655567999999999887777899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHH
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVK 304 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 304 (380)
+++.++..+++++.++|+|||.+++.++..............+....+......+ ....+++.+++.+
T Consensus 132 ~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (239)
T PRK00216 132 RNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKKAYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAA 211 (239)
T ss_pred ccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHHHHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999886543221100000000000000000000 0013467899999
Q ss_pred HHHhCCCcEEEEEecCCCc
Q 016921 305 LLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~~~~ 323 (380)
+|+++||+++++..+..++
T Consensus 212 ~l~~aGf~~~~~~~~~~~~ 230 (239)
T PRK00216 212 MLEEAGFERVRYRNLTGGI 230 (239)
T ss_pred HHHhCCCceeeeeeeecCc
Confidence 9999999999988776554
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=166.63 Aligned_cols=155 Identities=22% Similarity=0.337 Sum_probs=120.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
....+.+++.+... ++.+|||+|||+|.++..+++. +.+|+++|+|+.|++.++++.. .+.++++|++
T Consensus 28 ~~~a~~l~~~l~~~-----~~~~vLDiGcG~G~~~~~l~~~-~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~ 95 (251)
T PRK10258 28 RQSADALLAMLPQR-----KFTHVLDAGCGPGWMSRYWRER-GSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE 95 (251)
T ss_pred HHHHHHHHHhcCcc-----CCCeEEEeeCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence 34455555555432 3789999999999999998875 7899999999999999987642 3578999999
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
.+++++++||+|++..+++++.++..++.++.++|||||.+++..+..... ..+ ...+..........++.+
T Consensus 96 ~~~~~~~~fD~V~s~~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~-------~el-~~~~~~~~~~~~~~~~~~ 167 (251)
T PRK10258 96 SLPLATATFDLAWSNLAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSL-------PEL-HQAWQAVDERPHANRFLP 167 (251)
T ss_pred cCcCCCCcEEEEEECchhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCch-------HHH-HHHHHHhccCCccccCCC
Confidence 999888999999999999999999999999999999999999998754332 111 112222222233345789
Q ss_pred HHHHHHHHHhCCCcE
Q 016921 299 TADYVKLLQSLSLED 313 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~ 313 (380)
.+++..+++..|++.
T Consensus 168 ~~~l~~~l~~~~~~~ 182 (251)
T PRK10258 168 PDAIEQALNGWRYQH 182 (251)
T ss_pred HHHHHHHHHhCCcee
Confidence 999999999988864
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.9e-21 Score=165.22 Aligned_cols=152 Identities=26% Similarity=0.399 Sum_probs=121.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||.|.++..||+. |+.|+|+|+++.+++.|+.++.+.++ .+++.+..++++....++||+|+|..+++
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~-Ga~VtgiD~se~~I~~Ak~ha~e~gv--~i~y~~~~~edl~~~~~~FDvV~cmEVlE 135 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARL-GASVTGIDASEKPIEVAKLHALESGV--NIDYRQATVEDLASAGGQFDVVTCMEVLE 135 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHC-CCeeEEecCChHHHHHHHHhhhhccc--cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence 4899999999999999999997 89999999999999999999988886 47788888888765568999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-------CCCCHHHHHHHHHhCC
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-------AWCSTADYVKLLQSLS 310 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ll~~aG 310 (380)
|++|+..+++.+.+.+||||.++++++.. ....+....+..-.-...+| .+..++++..++..+|
T Consensus 136 Hv~dp~~~~~~c~~lvkP~G~lf~STinr--------t~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~~~ 207 (243)
T COG2227 136 HVPDPESFLRACAKLVKPGGILFLSTINR--------TLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLGAN 207 (243)
T ss_pred ccCCHHHHHHHHHHHcCCCcEEEEecccc--------CHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcccCC
Confidence 99999999999999999999999998642 22222222221111111122 2567899999999999
Q ss_pred CcEEEEEecC
Q 016921 311 LEDIKAEDWS 320 (380)
Q Consensus 311 f~~v~~~~~~ 320 (380)
+..++...+.
T Consensus 208 ~~~~~~~g~~ 217 (243)
T COG2227 208 LKIIDRKGLT 217 (243)
T ss_pred ceEEeecceE
Confidence 9888765443
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=170.93 Aligned_cols=156 Identities=21% Similarity=0.237 Sum_probs=118.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..++......|+|+|+|+.++..++......+...++.++.+|++++++ +++||+|++..+++|
T Consensus 123 g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~vl~H 201 (322)
T PRK15068 123 GRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGVLYH 201 (322)
T ss_pred CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC-cCCcCEEEECChhhc
Confidence 7899999999999999999874457999999999987665543333333579999999999987 789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+.++..++++++++|+|||.+++.++........ .+.+ ...+..+...+. ..+.+++.++|+++||+++++.+
T Consensus 202 ~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~--~l~p--~~~y~~~~~~~~---lps~~~l~~~L~~aGF~~i~~~~ 274 (322)
T PRK15068 202 RRSPLDHLKQLKDQLVPGGELVLETLVIDGDENT--VLVP--GDRYAKMRNVYF---IPSVPALKNWLERAGFKDVRIVD 274 (322)
T ss_pred cCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCcc--ccCc--hhHHhcCcccee---CCCHHHHHHHHHHcCCceEEEEe
Confidence 9999999999999999999999976543221110 0000 011111111122 24889999999999999999887
Q ss_pred cCCC
Q 016921 319 WSQN 322 (380)
Q Consensus 319 ~~~~ 322 (380)
....
T Consensus 275 ~~~t 278 (322)
T PRK15068 275 VSVT 278 (322)
T ss_pred CCCC
Confidence 7653
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=159.30 Aligned_cols=200 Identities=25% Similarity=0.323 Sum_probs=140.9
Q ss_pred HHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 016921 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (380)
Q Consensus 93 ~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (380)
..+++.++++||..+..+... ....+ ...++..+... ++.+|||+|||+|.+
T Consensus 2 ~~~~~~~~~~y~~~~~~~~~~-------------------~~~~~----~~~~~~~~~~~-----~~~~vldiG~G~G~~ 53 (223)
T TIGR01934 2 QEMFDRIAPKYDLLNDLLSFG-------------------LHRLW----RRRAVKLIGVF-----KGQKVLDVACGTGDL 53 (223)
T ss_pred HhHHHHHHhhhhHHHHHHhcc-------------------cHHHH----HHHHHHHhccC-----CCCeEEEeCCCCChh
Confidence 467888999999876553210 01222 22333433332 388999999999999
Q ss_pred HHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHH
Q 016921 173 SRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA 250 (380)
Q Consensus 173 ~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~ 250 (380)
+..+++..+ .+++++|+++.+++.++++.. ...++.+..+|+.+.+++.++||+|++..+++|..++..+++++.
T Consensus 54 ~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~~~~~~~~~~l~~~~ 130 (223)
T TIGR01934 54 AIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFGLRNVTDIQKALREMY 130 (223)
T ss_pred HHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeeeeCCcccHHHHHHHHH
Confidence 999998874 599999999999999988775 335789999999998877789999999999999999999999999
Q ss_pred HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc------------CCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 251 RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY------------YLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+.|+|||.+++.++......+.......+....+......+ ....+.+.+++..+|+++||+++.++.
T Consensus 131 ~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 210 (223)
T TIGR01934 131 RVLKPGGRLVILEFSKPANALLKKFYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRS 210 (223)
T ss_pred HHcCCCcEEEEEEecCCCchhhHHHHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceeee
Confidence 99999999999886433221110000001101110000000 001246889999999999999998887
Q ss_pred cCCCc
Q 016921 319 WSQNV 323 (380)
Q Consensus 319 ~~~~~ 323 (380)
+...+
T Consensus 211 ~~~~~ 215 (223)
T TIGR01934 211 LTFGV 215 (223)
T ss_pred eecce
Confidence 76553
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=1e-19 Score=169.66 Aligned_cols=146 Identities=24% Similarity=0.325 Sum_probs=118.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. +.+|+++|+|+.|++.|+++... .+++++.+|++++++++++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 47899999999999999998876 57999999999999999987542 46889999999999888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+|++++..++++++++|||||.+++.+..... .+...... ..+. .+.+.+++.++|+++||+.+++
T Consensus 189 ~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~---------~~~~r~~~---~~~~--~~~t~eEl~~lL~~aGF~~V~i 254 (340)
T PLN02490 189 EYWPDPQRGIKEAYRVLKIGGKACLIGPVHPT---------FWLSRFFA---DVWM--LFPKEEEYIEWFTKAGFKDVKL 254 (340)
T ss_pred hhCCCHHHHHHHHHHhcCCCcEEEEEEecCcc---------hhHHHHhh---hhhc--cCCCHHHHHHHHHHCCCeEEEE
Confidence 99999999999999999999999887643211 11111111 1111 1357899999999999999998
Q ss_pred EecCC
Q 016921 317 EDWSQ 321 (380)
Q Consensus 317 ~~~~~ 321 (380)
+++..
T Consensus 255 ~~i~~ 259 (340)
T PLN02490 255 KRIGP 259 (340)
T ss_pred EEcCh
Confidence 87654
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=160.56 Aligned_cols=154 Identities=24% Similarity=0.333 Sum_probs=122.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
.++.+|||||||+|..+..+++..+ .+|+|+|+++.|++.|+++....+. .++.++.+|++++++++++||+|++..
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3589999999999999888777653 5799999999999999999887776 489999999999988888999999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+++|.++...++++++++|||||++++.++..... +......... +... ......+.+++.++|+++||.++
T Consensus 155 v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~------~~~~~~~~~~-~~~~-~~~~~~~~~e~~~~l~~aGf~~v 226 (272)
T PRK11873 155 VINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGE------LPEEIRNDAE-LYAG-CVAGALQEEEYLAMLAEAGFVDI 226 (272)
T ss_pred cccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCC------CCHHHHHhHH-HHhc-cccCCCCHHHHHHHHHHCCCCce
Confidence 99999999999999999999999999988654321 1111111111 1111 11224578999999999999998
Q ss_pred EEEec
Q 016921 315 KAEDW 319 (380)
Q Consensus 315 ~~~~~ 319 (380)
++...
T Consensus 227 ~i~~~ 231 (272)
T PRK11873 227 TIQPK 231 (272)
T ss_pred EEEec
Confidence 77543
|
|
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.4e-19 Score=164.17 Aligned_cols=168 Identities=17% Similarity=0.162 Sum_probs=121.7
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
...++..++... +.+|||||||+|.++..++......|+|+|+|+.|+..++......+...++.+..+++++++
T Consensus 110 ~~~~l~~l~~~~-----g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp 184 (314)
T TIGR00452 110 WDRVLPHLSPLK-----GRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH 184 (314)
T ss_pred HHHHHHhcCCCC-----CCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC
Confidence 345566554433 889999999999999998876434799999999998775443322222357888999998887
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
.. ++||+|++.++++|++++..++++++++|||||.|++.++...... ...+.+. ..+..+...+. .++.++
T Consensus 185 ~~-~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~--~~~l~p~--~ry~k~~nv~f---lpS~~~ 256 (314)
T TIGR00452 185 EL-YAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDL--NTVLVPK--DRYAKMKNVYF---IPSVSA 256 (314)
T ss_pred CC-CCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCcc--ccccCch--HHHHhcccccc---CCCHHH
Confidence 53 5899999999999999999999999999999999999875432211 0111010 11222222222 358899
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+..+|+++||+++++.+....
T Consensus 257 L~~~L~~aGF~~V~i~~~~~t 277 (314)
T TIGR00452 257 LKNWLEKVGFENFRILDVLKT 277 (314)
T ss_pred HHHHHHHCCCeEEEEEeccCC
Confidence 999999999999998765543
|
Known examples to date are restricted to the proteobacteria. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-18 Score=158.47 Aligned_cols=161 Identities=22% Similarity=0.330 Sum_probs=115.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.....++..+.+.. +.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.++++. +++.++.+|+.
T Consensus 18 ~~~~~ll~~~~~~~-----~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~ 86 (258)
T PRK01683 18 RPARDLLARVPLEN-----PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIA 86 (258)
T ss_pred cHHHHHHhhCCCcC-----CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchh
Confidence 35556666665544 8899999999999999999886 689999999999999998764 46899999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHH--HHHHHHHhhcc-CCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE--QELLKKICDAY-YLPA 295 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~~~~ 295 (380)
.+. ++++||+|++..+++|+++...++++++++|||||.+++....... .+....+.... ..+........ ....
T Consensus 87 ~~~-~~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~-~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 164 (258)
T PRK01683 87 SWQ-PPQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLD-EPSHVLMREVAENGPWEQNLPDRGARRAP 164 (258)
T ss_pred ccC-CCCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCC-CHHHHHHHHHHccCchHHHhccccccCcC
Confidence 764 4579999999999999999999999999999999999886422110 01100000000 00001111111 0112
Q ss_pred CCCHHHHHHHHHhCCCcE
Q 016921 296 WCSTADYVKLLQSLSLED 313 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~ 313 (380)
+.+.+++.++|.++|+.+
T Consensus 165 ~~~~~~~~~~l~~~g~~v 182 (258)
T PRK01683 165 LPPPHAYYDALAPAACRV 182 (258)
T ss_pred CCCHHHHHHHHHhCCCce
Confidence 457889999999999874
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.7e-19 Score=159.41 Aligned_cols=152 Identities=14% Similarity=0.166 Sum_probs=114.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|++++...+...+++++++|+.+++++ .+|+|++..
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~--~~D~vv~~~ 133 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE--NASMVVLNF 133 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC--CCCEEehhh
Confidence 37899999999999999888742 6899999999999999999998877777899999999988754 599999999
Q ss_pred ccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--cc-------------CCCCCC
Q 016921 235 SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (380)
+++|+++ ...++++++++|||||.|++.+........ .............. .+ ......
T Consensus 134 ~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~----~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 134 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK----VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcch----hHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 9999964 468999999999999999999854322211 11111111111100 00 111136
Q ss_pred CHHHHHHHHHhCCCcEEE
Q 016921 298 STADYVKLLQSLSLEDIK 315 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~ 315 (380)
+.++..++|+++||..++
T Consensus 210 ~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 210 SVETHKARLHKAGFEHSE 227 (247)
T ss_pred CHHHHHHHHHHcCchhHH
Confidence 889999999999998653
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-19 Score=156.27 Aligned_cols=152 Identities=23% Similarity=0.302 Sum_probs=116.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..||+. |++|+|||+++.|++.|+++........ ++++.+.|++... +.||+|+|.
T Consensus 90 g~~ilDvGCGgGLLSepLArl-ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~---~~fDaVvcs 165 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARL-GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT---GKFDAVVCS 165 (282)
T ss_pred CceEEEeccCccccchhhHhh-CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc---cccceeeeH
Confidence 578999999999999999996 9999999999999999999954433222 3677888887763 559999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc--CCCCCCCHHHHHHHHHhCCC
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY--YLPAWCSTADYVKLLQSLSL 311 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~aGf 311 (380)
.+++|+.|++.+++.+.+.|||||.+++++.......-.... +..+.+..+.... ....+.+++++..+++.+|+
T Consensus 166 evleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i---~~~E~vl~ivp~Gth~~ekfi~p~e~~~~l~~~~~ 242 (282)
T KOG1270|consen 166 EVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTI---FLAEIVLRIVPKGTHTWEKFINPEELTSILNANGA 242 (282)
T ss_pred HHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccc---cHHHHHHHhcCCCCcCHHHcCCHHHHHHHHHhcCc
Confidence 999999999999999999999999999998654332211111 1112222222221 12247899999999999999
Q ss_pred cEEEEE
Q 016921 312 EDIKAE 317 (380)
Q Consensus 312 ~~v~~~ 317 (380)
.+..+.
T Consensus 243 ~v~~v~ 248 (282)
T KOG1270|consen 243 QVNDVV 248 (282)
T ss_pred chhhhh
Confidence 876654
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-19 Score=152.89 Aligned_cols=136 Identities=33% Similarity=0.528 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+++|+|+++.+++. .++.....+....+.++++||+|++..+++
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~-~~~~~g~D~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~ 89 (161)
T PF13489_consen 22 PGKRVLDIGCGTGSFLRALAKR-GFEVTGVDISPQMIEK-----------RNVVFDNFDAQDPPFPDGSFDLIICNDVLE 89 (161)
T ss_dssp TTSEEEEESSTTSHHHHHHHHT-TSEEEEEESSHHHHHH-----------TTSEEEEEECHTHHCHSSSEEEEEEESSGG
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHhh-----------hhhhhhhhhhhhhhccccchhhHhhHHHHh
Confidence 4889999999999999999776 7899999999999887 234455554445455679999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
|++|+..+++++.++|||||++++.++.... ... .....+ ........+++.+++..+++++||+++
T Consensus 90 ~~~d~~~~l~~l~~~LkpgG~l~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv 159 (161)
T PF13489_consen 90 HLPDPEEFLKELSRLLKPGGYLVISDPNRDD---------PSP-RSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIV 159 (161)
T ss_dssp GSSHHHHHHHHHHHCEEEEEEEEEEEEBTTS---------HHH-HHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEE
T ss_pred hcccHHHHHHHHHHhcCCCCEEEEEEcCCcc---------hhh-hHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999999865321 011 111111 000022246899999999999999998
Q ss_pred E
Q 016921 315 K 315 (380)
Q Consensus 315 ~ 315 (380)
+
T Consensus 160 ~ 160 (161)
T PF13489_consen 160 E 160 (161)
T ss_dssp E
T ss_pred E
Confidence 6
|
... |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-18 Score=155.39 Aligned_cols=152 Identities=16% Similarity=0.186 Sum_probs=115.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|.++..+++.+ +++++|+|+|+.|++.|++++...+...++.++++|+.+++++ .+|+|++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK--NASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC--CCCEEeeec
Confidence 37899999999999999998863 6799999999999999999987766556799999999988754 589999999
Q ss_pred ccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--cc-------------CCCCCC
Q 016921 235 SGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AY-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-------------~~~~~~ 297 (380)
+++|++ ++..++++++++|||||.+++.+........ ...........+.. .+ ......
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 206 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK----INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTD 206 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh----HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCC
Confidence 999996 4578999999999999999999864322211 11111111111110 00 112247
Q ss_pred CHHHHHHHHHhCCCcEEE
Q 016921 298 STADYVKLLQSLSLEDIK 315 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~ 315 (380)
+.+++.++|+++||..++
T Consensus 207 s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 207 SIETHKARLKNVGFSHVE 224 (239)
T ss_pred CHHHHHHHHHHcCCchHH
Confidence 899999999999998653
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-19 Score=148.69 Aligned_cols=106 Identities=32% Similarity=0.513 Sum_probs=97.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 233 (380)
++.+|||+|||+|.++..+++.. +.+++|+|+|+.|++.|+++++..+.+ +++|+++|+.+++ ++ +.||+|++.
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~-~~~D~I~~~ 80 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELE-EKFDIIISN 80 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSS-TTEEEEEEE
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccC-CCeeEEEEc
Confidence 48899999999999999999654 689999999999999999999988886 8999999999976 55 899999999
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+++|+.++..+++++.++|++||.+++.++.
T Consensus 81 ~~l~~~~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 81 GVLHHFPDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp STGGGTSHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred CchhhccCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999999999999999999999999999865
|
... |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-17 Score=150.57 Aligned_cols=141 Identities=30% Similarity=0.423 Sum_probs=113.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. ..+++|+|+++.++..++++.. +++.++.+|+.+.++++++||+|++..+++
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~ 109 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ 109 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence 5789999999999999999886 5679999999999998887653 378999999999888889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|+.++..++.++.++|+|||.+++.++..... ..+. ..... ....+.+.+++.++++++ |..+.+.
T Consensus 110 ~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~-------~~~~-~~~~~-----~~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 110 WCDDLSQALSELARVLKPGGLLAFSTFGPGTL-------HELR-QSFGQ-----HGLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred hccCHHHHHHHHHHHcCCCcEEEEEeCCccCH-------HHHH-HHHHH-----hccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 99999999999999999999999987643321 1111 11111 112357889999999998 9877654
Q ss_pred e
Q 016921 318 D 318 (380)
Q Consensus 318 ~ 318 (380)
.
T Consensus 176 ~ 176 (240)
T TIGR02072 176 E 176 (240)
T ss_pred E
Confidence 3
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.4e-19 Score=147.15 Aligned_cols=155 Identities=22% Similarity=0.347 Sum_probs=118.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeE-EEEcCCCCCC-CCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS-FQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~-~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
...|||||||||..-...-..-+++|+++|+++.|-+.+.+.++++. +.++. |++++.+++| ++++++|.|++..+|
T Consensus 77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k-~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvL 155 (252)
T KOG4300|consen 77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKK-PLQVERFVVADGENLPQLADGSYDTVVCTLVL 155 (252)
T ss_pred ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhcc-CcceEEEEeechhcCcccccCCeeeEEEEEEE
Confidence 55689999999998877764447899999999999999999998874 45676 9999999997 889999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc-cCCC--CCCCHHHHHHHHHhCCCcE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLP--AWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~ll~~aGf~~ 313 (380)
+...|+.+.|+++.|+|+|||++++.+....... .|. .++...... +... ...-..+..+.|+++-|+.
T Consensus 156 CSve~~~k~L~e~~rlLRpgG~iifiEHva~~y~-------~~n-~i~q~v~ep~~~~~~dGC~ltrd~~e~Leda~f~~ 227 (252)
T KOG4300|consen 156 CSVEDPVKQLNEVRRLLRPGGRIIFIEHVAGEYG-------FWN-RILQQVAEPLWHLESDGCVLTRDTGELLEDAEFSI 227 (252)
T ss_pred eccCCHHHHHHHHHHhcCCCcEEEEEecccccch-------HHH-HHHHHHhchhhheeccceEEehhHHHHhhhccccc
Confidence 9999999999999999999999999996544322 221 122221111 1111 0112345668899999999
Q ss_pred EEEEecCCC
Q 016921 314 IKAEDWSQN 322 (380)
Q Consensus 314 v~~~~~~~~ 322 (380)
++.+.....
T Consensus 228 ~~~kr~~~~ 236 (252)
T KOG4300|consen 228 DSCKRFNFG 236 (252)
T ss_pred chhhcccCC
Confidence 887766543
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.8e-18 Score=147.50 Aligned_cols=137 Identities=23% Similarity=0.363 Sum_probs=109.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.++++....++ .++.+.+.|+.+.+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~La~~-g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 107 (197)
T PRK11207 31 PGKTLDLGCGNGRNSLYLAAN-GFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLTFD-GEYDFILSTVVLMF 107 (197)
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCCcC-CCcCEEEEecchhh
Confidence 789999999999999999987 88999999999999999999888777 4689999999887764 67999999999988
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|||||.+++.........+.. ...+..++.+++.++++ ||+++..
T Consensus 108 ~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 108 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCC-----------------CCCCCccCHHHHHHHhC--CCeEEEe
Confidence 85 468999999999999999766543222111100 01123467899999997 9998876
Q ss_pred E
Q 016921 317 E 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 169 ~ 169 (197)
T PRK11207 169 N 169 (197)
T ss_pred e
Confidence 4
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.2e-19 Score=135.57 Aligned_cols=95 Identities=38% Similarity=0.623 Sum_probs=84.3
Q ss_pred EEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH
Q 016921 163 VDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK 242 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~ 242 (380)
||+|||+|..+..+++..+.+|+|+|+++.+++.++++... .++.+.++|++++|+++++||+|++..+++|++++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~~~~ 76 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN----EGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHLEDP 76 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT----STEEEEESBTTSSSS-TT-EEEEEEESHGGGSSHH
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc----cCchheeehHHhCccccccccccccccceeeccCH
Confidence 89999999999999987578999999999999999997754 34679999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCcEEEE
Q 016921 243 SKFVSELARVTAPAGTIII 261 (380)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~~ 261 (380)
.++++++.|+|||||++++
T Consensus 77 ~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 77 EAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHEEEEEEEEE
T ss_pred HHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.1e-17 Score=153.39 Aligned_cols=163 Identities=20% Similarity=0.267 Sum_probs=121.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..+++...+. ++.+|||||||+|.++..+++++ +.+++++|. +.+++.+++++.+.++.++++++.+|+.+.+
T Consensus 139 ~~l~~~~~~~-----~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 139 QLLLEEAKLD-----GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHHHHcCCC-----CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 3444554443 37899999999999999999987 689999998 7899999999998888889999999998766
Q ss_pred CCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
++ .+|+|++..++|++.+. ..++++++++|+|||++++.|+...... ...+.. ....+...........+.+.
T Consensus 213 ~~--~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (306)
T TIGR02716 213 YP--EADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPE--NPNFDY-LSHYILGAGMPFSVLGFKEQ 287 (306)
T ss_pred CC--CCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCC--CchhhH-HHHHHHHcccccccccCCCH
Confidence 54 36999999999888653 5799999999999999999997543321 111111 11111111111112234568
Q ss_pred HHHHHHHHhCCCcEEEE
Q 016921 300 ADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~ 316 (380)
+++.++|+++||+.+++
T Consensus 288 ~e~~~ll~~aGf~~v~~ 304 (306)
T TIGR02716 288 ARYKEILESLGYKDVTM 304 (306)
T ss_pred HHHHHHHHHcCCCeeEe
Confidence 99999999999998864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.7e-18 Score=136.17 Aligned_cols=105 Identities=33% Similarity=0.582 Sum_probs=90.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCCccEEEecc-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME- 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~- 234 (380)
|+.+|||||||+|.++..+++.. +++|+|+|+|+.+++.|++++...+..+++.++++|+ ..... .+.||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~~ 79 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDF-LEPFDLVICSGF 79 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTT-SSCEEEEEECSG
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCccc-CCCCCEEEECCC
Confidence 47899999999999999999954 8999999999999999999997777888999999999 33332 46799999998
Q ss_pred ccCCC---CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHM---PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~---~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++ .+..++++++.+.|+|||++++.+
T Consensus 80 ~~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 80 TLHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp SGGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 55544 356889999999999999999975
|
... |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.4e-17 Score=144.03 Aligned_cols=167 Identities=25% Similarity=0.278 Sum_probs=120.1
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
..+...++..+... ..++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+...++.|.++|+.
T Consensus 39 ~~~~~~~~~~l~~~---~~~~~~vLDiGcG~G~~~~~la~~-~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~ 114 (219)
T TIGR02021 39 AAMRRKLLDWLPKD---PLKGKRVLDAGCGTGLLSIELAKR-GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLL 114 (219)
T ss_pred HHHHHHHHHHHhcC---CCCCCEEEEEeCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 34445555555410 124789999999999999999886 78999999999999999999987766568999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC-C-
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL-P- 294 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (380)
+++ ++||+|++..+++|++. ...+++++.+++++++.+.+... . ... .....+......... +
T Consensus 115 ~~~---~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~i~~~~~---~------~~~-~~~~~~~~~~~~~~~~~~ 181 (219)
T TIGR02021 115 SLC---GEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVIFTFAPK---T------AWL-AFLKMIGELFPGSSRATS 181 (219)
T ss_pred hCC---CCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEEEEECCC---c------hHH-HHHHHHHhhCcCcccccc
Confidence 865 78999999999998853 57889999999987665554321 0 000 111112221111110 1
Q ss_pred -CCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 295 -AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 295 -~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
.+++++++.++++++||+++..+.....
T Consensus 182 ~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~ 210 (219)
T TIGR02021 182 AYLHPMTDLERALGELGWKIVREGLVSTG 210 (219)
T ss_pred eEEecHHHHHHHHHHcCceeeeeeccccc
Confidence 2468999999999999999988765544
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=142.59 Aligned_cols=138 Identities=17% Similarity=0.254 Sum_probs=108.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..++++ +.+|+|+|+|+.+++.+++++...++. +.+...|+...+++ ++||+|++..+++|
T Consensus 31 ~~~vLDiGcG~G~~a~~la~~-g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~~~~~~-~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 31 PCKTLDLGCGQGRNSLYLSLA-GYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDINAAALN-EDYDFIFSTVVFMF 106 (195)
T ss_pred CCcEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccchhcccc-CCCCEEEEeccccc
Confidence 679999999999999999986 889999999999999999988777763 77888888766654 68999999999998
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...++++++++|||||++++.++......+.. ...+..++++++.+++. +|+++..
T Consensus 107 ~~~~~~~~~l~~~~~~LkpgG~lli~~~~~~~~~~~~-----------------~~~~~~~~~~el~~~f~--~~~~~~~ 167 (195)
T TIGR00477 107 LQAGRVPEIIANMQAHTRPGGYNLIVAAMDTADYPCH-----------------MPFSFTFKEDELRQYYA--DWELLKY 167 (195)
T ss_pred CCHHHHHHHHHHHHHHhCCCcEEEEEEecccCCCCCC-----------------CCcCccCCHHHHHHHhC--CCeEEEe
Confidence 84 457899999999999999777665322211110 01122468999999997 6988877
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
.+-
T Consensus 168 ~e~ 170 (195)
T TIGR00477 168 NEA 170 (195)
T ss_pred ecc
Confidence 633
|
Part of a tellurite-reducing operon tehA and tehB |
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=140.05 Aligned_cols=162 Identities=25% Similarity=0.353 Sum_probs=121.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+-..+++..+++.. ..+|.|+|||+|..+..|++++ ++.++|+|.|++|++.|+++. ++++|..+|+.
T Consensus 17 RPa~dLla~Vp~~~-----~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~ 85 (257)
T COG4106 17 RPARDLLARVPLER-----PRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLR 85 (257)
T ss_pred CcHHHHHhhCCccc-----cceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHh
Confidence 34566777777665 8999999999999999999999 899999999999999998765 58999999999
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhcc--CCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAY--YLPA 295 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~ 295 (380)
++. +...+|+++++.++++++|-.+++..+...|.|||.|.+.....-.. +....+...... -+....... ...+
T Consensus 86 ~w~-p~~~~dllfaNAvlqWlpdH~~ll~rL~~~L~Pgg~LAVQmPdN~de-psH~~mr~~A~~~p~~~~l~~~~~~r~~ 163 (257)
T COG4106 86 TWK-PEQPTDLLFANAVLQWLPDHPELLPRLVSQLAPGGVLAVQMPDNLDE-PSHRLMRETADEAPFAQELGGRGLTRAP 163 (257)
T ss_pred hcC-CCCccchhhhhhhhhhccccHHHHHHHHHhhCCCceEEEECCCccCc-hhHHHHHHHHhcCchhhhhCccccccCC
Confidence 874 56889999999999999999999999999999999999976432111 111111111000 011111111 1234
Q ss_pred CCCHHHHHHHHHhCCCcEE
Q 016921 296 WCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v 314 (380)
..++..|.++|...+-++-
T Consensus 164 v~s~a~Yy~lLa~~~~rvD 182 (257)
T COG4106 164 LPSPAAYYELLAPLACRVD 182 (257)
T ss_pred CCCHHHHHHHhCcccceee
Confidence 6789999999998876543
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.1e-17 Score=147.19 Aligned_cols=155 Identities=23% Similarity=0.282 Sum_probs=115.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||.|..+..++.+....|+|+|+++-.....+....-.|....+.+....++++|. .+.||+|+|.++|+|
T Consensus 116 gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGVLYH 194 (315)
T PF08003_consen 116 GKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN-LGAFDTVFSMGVLYH 194 (315)
T ss_pred CCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-cCCcCEEEEeeehhc
Confidence 8999999999999999999884557999999998766544433333333334444467788876 789999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
..++-..|.++...|+|||.|++-+........ ..+.+ ...+.++...+.+| |...+..+|+++||++|++-+
T Consensus 195 rr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~--~~L~P--~~rYa~m~nv~FiP---s~~~L~~wl~r~gF~~v~~v~ 267 (315)
T PF08003_consen 195 RRSPLDHLKQLKDSLRPGGELVLETLVIDGDEN--TVLVP--EDRYAKMRNVWFIP---SVAALKNWLERAGFKDVRCVD 267 (315)
T ss_pred cCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCc--eEEcc--CCcccCCCceEEeC---CHHHHHHHHHHcCCceEEEec
Confidence 999999999999999999999998765433211 11111 01233344444444 899999999999999999876
Q ss_pred cCC
Q 016921 319 WSQ 321 (380)
Q Consensus 319 ~~~ 321 (380)
...
T Consensus 268 ~~~ 270 (315)
T PF08003_consen 268 VSP 270 (315)
T ss_pred Ccc
Confidence 653
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-16 Score=136.20 Aligned_cols=146 Identities=18% Similarity=0.135 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
.+.|...+++.+.....++ ++.+|||||||+|..+..++... +++|+|+|+++.|++.|+++++..++. ++++
T Consensus 26 ~~~~~~~~~d~l~l~~~l~-----~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~ 99 (187)
T PRK00107 26 EELWERHILDSLAIAPYLP-----GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTV 99 (187)
T ss_pred HHHHHHHHHHHHHHHhhcC-----CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEE
Confidence 3455555656554433333 37899999999999999998765 789999999999999999999998875 5999
Q ss_pred EEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC
Q 016921 213 QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (380)
Q Consensus 213 ~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (380)
+.+|+.+++. .++||+|++.. +.+...+++.++++|||||++++....
T Consensus 100 ~~~d~~~~~~-~~~fDlV~~~~----~~~~~~~l~~~~~~LkpGG~lv~~~~~--------------------------- 147 (187)
T PRK00107 100 VHGRAEEFGQ-EEKFDVVTSRA----VASLSDLVELCLPLLKPGGRFLALKGR--------------------------- 147 (187)
T ss_pred EeccHhhCCC-CCCccEEEEcc----ccCHHHHHHHHHHhcCCCeEEEEEeCC---------------------------
Confidence 9999998776 67999999864 457789999999999999999997631
Q ss_pred CCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 293 LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
....++.++.+..|+.+.....++.
T Consensus 148 ----~~~~~l~~~~~~~~~~~~~~~~~~~ 172 (187)
T PRK00107 148 ----DPEEEIAELPKALGGKVEEVIELTL 172 (187)
T ss_pred ----ChHHHHHHHHHhcCceEeeeEEEec
Confidence 1235566777777998777666553
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.7e-16 Score=142.84 Aligned_cols=201 Identities=20% Similarity=0.254 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHhccch-hhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC
Q 016921 92 ARELKEGIAEFYDESS-SLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG 168 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~-~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG 168 (380)
-..-.+.|.++||..+ +.|..+|+..... ..+..-. .+.. .++.++..+.... ..++.+|||||||
T Consensus 86 ~~~~~~~V~~~Fd~~a~~~w~~iy~~~d~v~~~~l~~~~-----~~~~----~v~~~l~~l~~~~--~~~~~~VLDlGcG 154 (315)
T PLN02585 86 GGDDKEVVREYFNTTGFERWRKIYGETDEVNKVQLDIRL-----GHAQ----TVEKVLLWLAEDG--SLAGVTVCDAGCG 154 (315)
T ss_pred HHHHHHHHHHHhcccchhhHHHhcCCccccCceeeeccc-----ChHH----HHHHHHHHHHhcC--CCCCCEEEEecCC
Confidence 3345567888898764 5566666642211 1111000 0112 2333333332110 0237899999999
Q ss_pred cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH--
Q 016921 169 IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK-- 242 (380)
Q Consensus 169 tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~-- 242 (380)
+|.++..+++. +.+|+|+|+|+.|++.|+++....+. ..++.|...|+..+ +++||+|+|..+++|+++.
T Consensus 155 tG~~a~~la~~-g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~~~vL~H~p~~~~ 230 (315)
T PLN02585 155 TGSLAIPLALE-GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTCLDVLIHYPQDKA 230 (315)
T ss_pred CCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEEcCEEEecCHHHH
Confidence 99999999986 88999999999999999999876421 13678999998654 4789999999999998763
Q ss_pred HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH---hhccC-CC--CCCCHHHHHHHHHhCCCcEEEE
Q 016921 243 SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI---CDAYY-LP--AWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 243 ~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~--~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
..+++.+.+ +.+||. ++.. .. .. +....+... ..... .. .+.+.++++++|+++||+++..
T Consensus 231 ~~ll~~l~~-l~~g~l-iIs~-~p-----~~-----~~~~~l~~~g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~ 297 (315)
T PLN02585 231 DGMIAHLAS-LAEKRL-IISF-AP-----KT-----LYYDILKRIGELFPGPSKATRAYLHAEADVERALKKAGWKVARR 297 (315)
T ss_pred HHHHHHHHh-hcCCEE-EEEe-CC-----cc-----hHHHHHHHHHhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEE
Confidence 346666665 455554 4432 11 10 111122221 11111 11 1347999999999999998865
Q ss_pred EecC
Q 016921 317 EDWS 320 (380)
Q Consensus 317 ~~~~ 320 (380)
+...
T Consensus 298 ~~~~ 301 (315)
T PLN02585 298 EMTA 301 (315)
T ss_pred EEee
Confidence 5433
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=139.11 Aligned_cols=157 Identities=27% Similarity=0.332 Sum_probs=116.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++. +++++++|+++.+++.+++++...+. .+.+...|+.+.+ ...++||+|++..++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l 124 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL-GADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEML 124 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence 4889999999999999999886 78999999999999999998876554 5788888887764 345799999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh--ccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD--AYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|++++..+++.+.++|+|||.+++..+..... ...........+..... ......+++++++.++|+++||+++
T Consensus 125 ~~~~~~~~~l~~~~~~L~~gG~l~v~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v 201 (233)
T PRK05134 125 EHVPDPASFVRACAKLVKPGGLVFFSTLNRNLK---SYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQ 201 (233)
T ss_pred hccCCHHHHHHHHHHHcCCCcEEEEEecCCChH---HHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEe
Confidence 999999999999999999999999886532110 00000000000111100 0112246789999999999999999
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
+...+.
T Consensus 202 ~~~~~~ 207 (233)
T PRK05134 202 DITGLH 207 (233)
T ss_pred eeeeEE
Confidence 875433
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.8e-16 Score=137.42 Aligned_cols=151 Identities=23% Similarity=0.316 Sum_probs=107.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +..|+|+|+|+.+++.|+++....+...++.+..+|+.. .+++||+|++..+++
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~-~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARR-GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES---LLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh---ccCCcCEEEEcchhh
Confidence 3789999999999999999886 678999999999999999998877765689999999533 357899999999999
Q ss_pred CCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCc
Q 016921 238 HMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 238 ~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGf~ 312 (380)
|+++ ...+++++.+.+++++.+.+.. . ..... ....+....... ....+.+.+++.++++++||+
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~~~~i~~~~--~-------~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 208 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRGSLIFTFAP--Y-------TPLLA-LLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGFK 208 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCCeEEEEECC--c-------cHHHH-HHHHhccccCCccCCCCccccCHHHHHHHHHHCCCc
Confidence 9864 4678888888765444332211 0 00000 011111111111 011246789999999999999
Q ss_pred EEEEEecCCC
Q 016921 313 DIKAEDWSQN 322 (380)
Q Consensus 313 ~v~~~~~~~~ 322 (380)
+++.+.+...
T Consensus 209 ~~~~~~~~~~ 218 (230)
T PRK07580 209 VVRTERISSG 218 (230)
T ss_pred eEeeeeccch
Confidence 9998776644
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-16 Score=143.82 Aligned_cols=137 Identities=18% Similarity=0.283 Sum_probs=109.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.+...|+...++ +++||+|++..+++|
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~-g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~-~~~fD~I~~~~vl~~ 196 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALL-GFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASI-QEEYDFILSTVVLMF 196 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccc-cCCccEEEEcchhhh
Confidence 569999999999999999986 88999999999999999999888776 68889999887655 678999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|+|||++++.........+.. ...+..++++++.+++. +|+++..
T Consensus 197 l~~~~~~~~l~~~~~~LkpgG~~l~v~~~~~~~~~~~-----------------~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 197 LNRERIPAIIKNMQEHTNPGGYNLIVCAMDTEDYPCP-----------------MPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecccccCCCC-----------------CCCCcccCHHHHHHHhC--CCEEEEE
Confidence 85 567899999999999999777553322211100 01122468899999997 5988876
Q ss_pred Ee
Q 016921 317 ED 318 (380)
Q Consensus 317 ~~ 318 (380)
.+
T Consensus 258 ~e 259 (287)
T PRK12335 258 NE 259 (287)
T ss_pred ec
Confidence 43
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=136.66 Aligned_cols=153 Identities=24% Similarity=0.308 Sum_probs=116.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
.+.+|||+|||+|.++..+++. +..++|+|+++.+++.+++++...+. .++.+...|+.+.+.+ .++||+|++..++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~-~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL-GANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 3789999999999999998875 67899999999999999998876654 2688999998876543 3789999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH-----HHHHhh--ccCCCCCCCHHHHHHHHHhC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL-----LKKICD--AYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~~~~~~~~~~~~~ll~~a 309 (380)
+|+.++..+++++.++|+|||.+++....... ....... ...... ......+.+.+++.++++++
T Consensus 123 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 194 (224)
T TIGR01983 123 EHVPDPQAFIRACAQLLKPGGILFFSTINRTP--------KSYLLAIVGAEYILRIVPKGTHDWEKFIKPSELTSWLESA 194 (224)
T ss_pred HhCCCHHHHHHHHHHhcCCCcEEEEEecCCCc--------hHHHHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHHHHHc
Confidence 99999999999999999999999987643211 0111110 100100 01112356889999999999
Q ss_pred CCcEEEEEecC
Q 016921 310 SLEDIKAEDWS 320 (380)
Q Consensus 310 Gf~~v~~~~~~ 320 (380)
||+++++....
T Consensus 195 G~~i~~~~~~~ 205 (224)
T TIGR01983 195 GLRVKDVKGLV 205 (224)
T ss_pred CCeeeeeeeEE
Confidence 99999876443
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-15 Score=129.29 Aligned_cols=127 Identities=17% Similarity=0.147 Sum_probs=102.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++... +.+|+|+|+|+.|++.+++++++.++. +++++++|+.+++ ..++||+|++..
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~-~~~~fD~I~s~~--- 117 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQ-HEEQFDVITSRA--- 117 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhcc-ccCCccEEEehh---
Confidence 7899999999999999998765 578999999999999999998888774 6999999998874 357999999865
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh---CCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS---LSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~---aGf~~v 314 (380)
+.+...+++.+.++|+|||.+++.... ....++..+.+. .||+.+
T Consensus 118 -~~~~~~~~~~~~~~LkpgG~lvi~~~~-------------------------------~~~~~~~~~~e~~~~~~~~~~ 165 (181)
T TIGR00138 118 -LASLNVLLELTLNLLKVGGYFLAYKGK-------------------------------KYLDEIEEAKRKCQVLGVEPL 165 (181)
T ss_pred -hhCHHHHHHHHHHhcCCCCEEEEEcCC-------------------------------CcHHHHHHHHHhhhhcCceEe
Confidence 346677889999999999999986410 123344444444 799999
Q ss_pred EEEecCCC
Q 016921 315 KAEDWSQN 322 (380)
Q Consensus 315 ~~~~~~~~ 322 (380)
+...++.+
T Consensus 166 ~~~~~~~~ 173 (181)
T TIGR00138 166 EVPPLTGP 173 (181)
T ss_pred eccccCCC
Confidence 98877655
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-16 Score=132.52 Aligned_cols=138 Identities=17% Similarity=0.267 Sum_probs=100.5
Q ss_pred EEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 185 QGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 185 ~giD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+|+|+|+.|++.|+++.... +...+++|+++|++++|+++++||+|++.+++++++|+.+++++++|+|||||.+++.
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~ 80 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSIL 80 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEE
Confidence 48999999999998776532 2234799999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCccccchHHHH-------HHHHHhhcc-----CCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 263 TWCHRDLAPSEESLQPWEQE-------LLKKICDAY-----YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~-----~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
++..+..... ..+..+... .+......+ .+..+.+++++.++|+++||+.+........+
T Consensus 81 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g~ 152 (160)
T PLN02232 81 DFNKSNQSVT-TFMQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGGF 152 (160)
T ss_pred ECCCCChHHH-HHHHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcchH
Confidence 9875432100 000000000 000000111 11236789999999999999999877665443
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=129.19 Aligned_cols=137 Identities=24% Similarity=0.428 Sum_probs=102.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.++||+|||.|..+..||++ |..|+++|+|+..++.+++.+.+.+++ ++..+.|+.+..++ +.||+|++..+++|
T Consensus 31 ~g~~LDlgcG~GRNalyLA~~-G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~~~~~-~~yD~I~st~v~~f 106 (192)
T PF03848_consen 31 PGKALDLGCGEGRNALYLASQ-GFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLNDFDFP-EEYDFIVSTVVFMF 106 (192)
T ss_dssp SSEEEEES-TTSHHHHHHHHT-T-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCCBS-T-TTEEEEEEESSGGG
T ss_pred CCcEEEcCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchhcccc-CCcCEEEEEEEecc
Confidence 789999999999999999998 999999999999999999998888874 99999999887765 78999999888888
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ ....+++.+...++|||++++..+......+... ..+-.+.+.++...+. ||+++..
T Consensus 107 L~~~~~~~i~~~m~~~~~pGG~~li~~~~~~~d~p~~~-----------------~~~f~~~~~EL~~~y~--dW~il~y 167 (192)
T PF03848_consen 107 LQRELRPQIIENMKAATKPGGYNLIVTFMETPDYPCPS-----------------PFPFLLKPGELREYYA--DWEILKY 167 (192)
T ss_dssp S-GGGHHHHHHHHHHTEEEEEEEEEEEEB--SSS--SS-------------------S--B-TTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHhhcCCcEEEEEEEecccCCCCCCC-----------------CCCcccCHHHHHHHhC--CCeEEEE
Confidence 84 4578999999999999998887654322221111 0011245678888887 8988876
Q ss_pred Ee
Q 016921 317 ED 318 (380)
Q Consensus 317 ~~ 318 (380)
.+
T Consensus 168 ~E 169 (192)
T PF03848_consen 168 NE 169 (192)
T ss_dssp EE
T ss_pred Ec
Confidence 43
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=131.47 Aligned_cols=99 Identities=21% Similarity=0.344 Sum_probs=85.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. +.+++|+|+|+.|++.|+++. +++.+.++|+.+ ++++++||+|++..+++
T Consensus 44 ~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~------~~~~~~~~d~~~-~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 44 IASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL------PNINIIQGSLFD-PFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC------CCCcEEEeeccC-CCCCCCEEEEEECChhh
Confidence 7789999999999999998875 689999999999999998754 357888999888 78889999999999999
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
|++ +..++++++++++ ++.+++.++..
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 995 3578899999987 57888888643
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=132.96 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=105.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.|+++... .++.+.+.+...++.++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~----~~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR----PGVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc----CCCeEEEEecccccccCCCccEEEE
Confidence 37899999999999998887642 35999999999999999886532 2467777777777767789999999
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh-hc-------cCCCCCCCHHHH
Q 016921 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DA-------YYLPAWCSTADY 302 (380)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~ 302 (380)
+.+++|+++. ..++++++++++ |.+++.++..... .+.... ....... .. ..+.++++++++
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~~~-----~~~~~~-~~~~~~~~~~~~~~d~~~s~~~~~~~~el 207 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRSRL-----AYALFW-AGTRLLSRSSFVHTDGLLSVRRSYTPAEL 207 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccCHH-----HHHHHH-HHHHHhccCceeeccchHHHHhhcCHHHH
Confidence 9999999875 579999999998 6667766543210 000000 0000000 00 112246899999
Q ss_pred HHHHHhCCCcEEEEE
Q 016921 303 VKLLQSLSLEDIKAE 317 (380)
Q Consensus 303 ~~ll~~aGf~~v~~~ 317 (380)
.+++++ ||++....
T Consensus 208 ~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 208 AALAPQ-GWRVERQW 221 (232)
T ss_pred HHHhhC-CCeEEecc
Confidence 999999 99977643
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.1e-16 Score=122.88 Aligned_cols=94 Identities=36% Similarity=0.648 Sum_probs=80.6
Q ss_pred EEEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc-cc
Q 016921 162 VVDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~--~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (380)
|||+|||+|..+..+++.+ + .+++|+|+|+.|++.++++....+. +++++++|+.+++..+++||+|++.+ ++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 7999999999999999885 3 7999999999999999999987664 79999999999887788999999954 49
Q ss_pred CCCCC--HHHHHHHHHHhcCCCc
Q 016921 237 EHMPD--KSKFVSELARVTAPAG 257 (380)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG 257 (380)
+|+.+ ..++++++.++|||||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99864 5789999999999998
|
|
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-14 Score=125.92 Aligned_cols=126 Identities=17% Similarity=0.235 Sum_probs=102.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .+++++.+|+.. ++ .++||+|++.....
T Consensus 32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~-~~-~~~~D~v~~~~~~~ 108 (187)
T PRK08287 32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPI-EL-PGKADAIFIGGSGG 108 (187)
T ss_pred CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchh-hc-CcCCCEEEECCCcc
Confidence 8899999999999999999876 57999999999999999999887776 479999998753 33 36899999876544
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....+++.+.+.|+|||++++..... .+.+++.++++++||..+++.
T Consensus 109 ---~~~~~l~~~~~~Lk~gG~lv~~~~~~------------------------------~~~~~~~~~l~~~g~~~~~~~ 155 (187)
T PRK08287 109 ---NLTAIIDWSLAHLHPGGRLVLTFILL------------------------------ENLHSALAHLEKCGVSELDCV 155 (187)
T ss_pred ---CHHHHHHHHHHhcCCCeEEEEEEecH------------------------------hhHHHHHHHHHHCCCCcceEE
Confidence 45678999999999999998865210 134677789999999988765
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
.+.
T Consensus 156 ~~~ 158 (187)
T PRK08287 156 QLQ 158 (187)
T ss_pred EEE
Confidence 443
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.9e-14 Score=127.22 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=99.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++....+++++|+++.+++.+++++...+. ++.++.+|+.+. +++++||+|+++--...
T Consensus 37 ~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~-~~~~~fD~Vi~npPy~~ 113 (223)
T PRK14967 37 GRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARA-VEFRPFDVVVSNPPYVP 113 (223)
T ss_pred CCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhh-ccCCCeeEEEECCCCCC
Confidence 789999999999999999875234999999999999999998877664 588899998763 45679999998742221
Q ss_pred CC---------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 239 MP---------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 239 ~~---------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.. ....+++++.++|||||++++..... .
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~------------------------------~ 163 (223)
T PRK14967 114 APPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSEL------------------------------S 163 (223)
T ss_pred CCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecc------------------------------c
Confidence 11 13567889999999999999865211 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
...++.+.+++.||..........++
T Consensus 164 ~~~~~~~~l~~~g~~~~~~~~~~~~~ 189 (223)
T PRK14967 164 GVERTLTRLSEAGLDAEVVASQWIPF 189 (223)
T ss_pred CHHHHHHHHHHCCCCeEEEEeeccCc
Confidence 23567788899999866655444443
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.64 E-value=8e-15 Score=127.98 Aligned_cols=144 Identities=22% Similarity=0.279 Sum_probs=103.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++..+..++|+|+++.+++.+++ .+++++++|+.+ + ++++++||+|++..++
T Consensus 14 ~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~--------~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l 85 (194)
T TIGR02081 14 GSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA--------RGVNVIQGDLDEGLEAFPDKSFDYVILSQTL 85 (194)
T ss_pred CCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH--------cCCeEEEEEhhhcccccCCCCcCEEEEhhHh
Confidence 77999999999999999987667789999999999988764 247888899876 4 3667899999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH-Hh---h----cc---CCCCCCCHHHHHHH
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-IC---D----AY---YLPAWCSTADYVKL 305 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~----~~---~~~~~~~~~~~~~l 305 (380)
+|++++..+++++.+++++ +++..... .... .....+.. .. . .+ ....+++.+++.++
T Consensus 86 ~~~~d~~~~l~e~~r~~~~---~ii~~p~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l 154 (194)
T TIGR02081 86 QATRNPEEILDEMLRVGRH---AIVSFPNF-------GYWR-VRWSILTKGRMPVTGELPYDWYNTPNIHFCTIADFEDL 154 (194)
T ss_pred HcCcCHHHHHHHHHHhCCe---EEEEcCCh-------hHHH-HHHHHHhCCccccCCCCCccccCCCCcccCcHHHHHHH
Confidence 9999999999999887654 33432110 0000 00000000 00 0 00 01236799999999
Q ss_pred HHhCCCcEEEEEecCC
Q 016921 306 LQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~ 321 (380)
++++||++++...+..
T Consensus 155 l~~~Gf~v~~~~~~~~ 170 (194)
T TIGR02081 155 CGELNLRILDRAAFDV 170 (194)
T ss_pred HHHCCCEEEEEEEecc
Confidence 9999999999887754
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-15 Score=126.32 Aligned_cols=125 Identities=22% Similarity=0.341 Sum_probs=94.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
-.++||+|||.|.++..|+.+ ..+++++|+|+..++.|+++.... ++|+|.++|+.+. .|+++||+|++..++++
T Consensus 44 y~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~~---~~V~~~~~dvp~~-~P~~~FDLIV~SEVlYY 118 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAGL---PHVEWIQADVPEF-WPEGRFDLIVLSEVLYY 118 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT----SSEEEEES-TTT----SS-EEEEEEES-GGG
T ss_pred cceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCCC---CCeEEEECcCCCC-CCCCCeeEEEEehHhHc
Confidence 679999999999999999998 568999999999999999998643 5899999999875 46899999999999999
Q ss_pred CCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 239 MPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 239 ~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
+.+ ...+++.+...|+|||.|++..+. ......|+.+ +..+.+.++|++.
T Consensus 119 L~~~~~L~~~l~~l~~~L~pgG~LV~g~~r-------------------d~~c~~wgh~--~ga~tv~~~~~~~ 171 (201)
T PF05401_consen 119 LDDAEDLRAALDRLVAALAPGGHLVFGHAR-------------------DANCRRWGHA--AGAETVLEMLQEH 171 (201)
T ss_dssp SSSHHHHHHHHHHHHHTEEEEEEEEEEEE--------------------HHHHHHTT-S----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCEEEEEEec-------------------CCcccccCcc--cchHHHHHHHHHH
Confidence 975 357899999999999999998842 1122334433 5678888888874
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-17 Score=125.22 Aligned_cols=96 Identities=29% Similarity=0.438 Sum_probs=66.5
Q ss_pred EEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccccCCC
Q 016921 163 VDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~ 239 (380)
||||||+|.++..+++.. ..+++|+|+|+.|++.+++++...+. .+......+..+.. ...++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGN-DNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT----EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-cceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence 799999999999999986 68999999999999999998887653 23334444433321 123699999999999999
Q ss_pred CCHHHHHHHHHHhcCCCcEE
Q 016921 240 PDKSKFVSELARVTAPAGTI 259 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l 259 (380)
+++..++++++++|||||+|
T Consensus 80 ~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp S-HHHHHHHHTTT-TSS-EE
T ss_pred hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=7.5e-15 Score=129.11 Aligned_cols=112 Identities=19% Similarity=0.211 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..+++.+.+.+ +.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++..+++++.+|+.
T Consensus 60 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~ 134 (205)
T PRK13944 60 MVAMMCELIEPRP-----GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGK 134 (205)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcc
Confidence 4555666665543 8899999999999999998875 46999999999999999999988887667999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.....++||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 135 ~~~~~~~~fD~Ii~~~~~~~~~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 135 RGLEKHAPFDAIIVTAAASTIP------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCCccCCCccEEEEccCcchhh------HHHHHhcCcCcEEEEEE
Confidence 7544457999999998887764 46889999999998854
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.2e-14 Score=123.62 Aligned_cols=130 Identities=16% Similarity=0.247 Sum_probs=106.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+++|+|+.+++.+++++...+. +++++.+|+.+.. .++||+|+++..+++
T Consensus 20 ~~~vLdlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 20 PDDVLEIGAGTGLVAIRLKGK-GKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGV--RGKFDVILFNPPYLP 94 (179)
T ss_pred CCeEEEeCCChhHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccccc--CCcccEEEECCCCCC
Confidence 678999999999999999987 55999999999999999999887664 5889999987653 458999999877766
Q ss_pred CCC---------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 239 MPD---------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 239 ~~~---------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.++ ...+++++.++|||||.+++..... .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~------------------------------~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL------------------------------N 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc------------------------------C
Confidence 643 2467999999999999999976321 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
...++.+.|+++||+...+.......
T Consensus 145 ~~~~~~~~l~~~gf~~~~~~~~~~~~ 170 (179)
T TIGR00537 145 GEPDTFDKLDERGFRYEIVAERGLFF 170 (179)
T ss_pred ChHHHHHHHHhCCCeEEEEEEeecCc
Confidence 24678899999999998887766544
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5e-15 Score=146.97 Aligned_cols=139 Identities=19% Similarity=0.284 Sum_probs=107.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++. +.+|+|+|+++.|++.+++.. +..+++.++++|+.. +++++++||+|++..++
T Consensus 38 ~~~vLDlGcG~G~~~~~la~~-~~~v~giD~s~~~l~~a~~~~---~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 38 GKSVLELGAGIGRFTGELAKK-AGQVIALDFIESVIKKNESIN---GHYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCEEEEeCCCcCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHh---ccCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 679999999999999999987 679999999999998876532 223579999999863 56778899999999999
Q ss_pred CCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|+++ ...++++++++|||||++++.+.+......... ......+.....|.+++.++||..+
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~f~~~~~~~~ 178 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCFHQSGDSKR---------------KNNPTHYREPRFYTKVFKECHTRDE 178 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccCCCCCcccc---------------cCCCCeecChHHHHHHHHHheeccC
Confidence 99976 478999999999999999998864322110000 0011123457789999999998876
Q ss_pred EE
Q 016921 315 KA 316 (380)
Q Consensus 315 ~~ 316 (380)
..
T Consensus 179 ~~ 180 (475)
T PLN02336 179 DG 180 (475)
T ss_pred CC
Confidence 53
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=130.78 Aligned_cols=104 Identities=22% Similarity=0.336 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChH-HHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHH-cCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGS-SRYLAKK-F-GAKCQGITLSPVQAQRANALAAA-RGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~-~-~~~v~giD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|+|||||.|.+ +..++.. + +.+++|+|+++++++.|++.+.. .++.++++|..+|+.+.+...+.||+|++.
T Consensus 124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~- 202 (296)
T PLN03075 124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA- 202 (296)
T ss_pred CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-
Confidence 78999999997754 4444433 3 67899999999999999999964 788789999999998864335789999999
Q ss_pred ccCCC--CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHM--PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~--~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++ .++.++++++++.|+|||.+++..
T Consensus 203 ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 203 ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 88888 689999999999999999999975
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-14 Score=125.84 Aligned_cols=141 Identities=18% Similarity=0.196 Sum_probs=104.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------CCCCCeEEEEcCCCCCCCC-CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------GLADKVSFQVGDALQQPFP-DGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------~~~~~v~~~~~d~~~~~~~-~~~ 226 (380)
+.+|||+|||.|..+..||++ |.+|+|+|+|+.+++.+.+..... .-..+++++++|+.+++.. .+.
T Consensus 35 ~~rvLd~GCG~G~da~~LA~~-G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~ 113 (213)
T TIGR03840 35 GARVFVPLCGKSLDLAWLAEQ-GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGP 113 (213)
T ss_pred CCeEEEeCCCchhHHHHHHhC-CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccCCC
Confidence 789999999999999999987 999999999999999764322100 0124689999999887632 467
Q ss_pred ccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016921 227 FDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 227 fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
||.|+-..+++|++. ...+++.+.++|||||++++..+....... .+-+...+++++.+
T Consensus 114 fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~-------------------~gpp~~~~~~eL~~ 174 (213)
T TIGR03840 114 VDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM-------------------AGPPFSVSPAEVEA 174 (213)
T ss_pred cCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC-------------------CCcCCCCCHHHHHH
Confidence 999999988899953 467999999999999987777654322110 01112368899999
Q ss_pred HHHhCCCcEEEEEecC
Q 016921 305 LLQSLSLEDIKAEDWS 320 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~ 320 (380)
++.. +|++...+...
T Consensus 175 ~f~~-~~~i~~~~~~~ 189 (213)
T TIGR03840 175 LYGG-HYEIELLESRD 189 (213)
T ss_pred HhcC-CceEEEEeecc
Confidence 8863 57766665444
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.62 E-value=9.6e-15 Score=123.23 Aligned_cols=148 Identities=23% Similarity=0.309 Sum_probs=110.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
++.+|||+|||.|.+...|.+..+....|+|++++.+..+.+ ..+.++++|+++- .|++++||.|++..+
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~--------rGv~Viq~Dld~gL~~f~d~sFD~VIlsqt 84 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVA--------RGVSVIQGDLDEGLADFPDQSFDYVILSQT 84 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHH--------cCCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence 489999999999999999988768999999999998877654 3478999999873 488999999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH-------HhhccC-CC--CCCCHHHHHHH
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-------ICDAYY-LP--AWCSTADYVKL 305 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~-~~--~~~~~~~~~~l 305 (380)
|+++.++..+++++.|+ |...+++-. +...+.....-.+.. ....|+ .| ++.|..+++++
T Consensus 85 LQ~~~~P~~vL~EmlRV---gr~~IVsFP-------NFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~l 154 (193)
T PF07021_consen 85 LQAVRRPDEVLEEMLRV---GRRAIVSFP-------NFGHWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDL 154 (193)
T ss_pred HHhHhHHHHHHHHHHHh---cCeEEEEec-------ChHHHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHH
Confidence 99999999999999877 556666552 221111111111000 001111 11 36899999999
Q ss_pred HHhCCCcEEEEEecCCCc
Q 016921 306 LQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~~~ 323 (380)
.++.|+++++...+....
T Consensus 155 c~~~~i~I~~~~~~~~~~ 172 (193)
T PF07021_consen 155 CRELGIRIEERVFLDGGR 172 (193)
T ss_pred HHHCCCEEEEEEEEcCCC
Confidence 999999999887766544
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.5e-15 Score=134.23 Aligned_cols=106 Identities=21% Similarity=0.340 Sum_probs=86.4
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcCC-----------------
Q 016921 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARGL----------------- 206 (380)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~----~~~~----------------- 206 (380)
++.+|+|+|||||. ++..+++.. +.+|+|+|+|+.|++.|++... ..++
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 36899999999997 455565543 3589999999999999997531 0111
Q ss_pred -----CCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 207 -----ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 207 -----~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+|.|.+.|+.+.+++.++||+|+|.++++|+++ ..+++++++++|+|||+|++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 14789999999998777889999999999999964 4589999999999999999975
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-14 Score=115.29 Aligned_cols=111 Identities=20% Similarity=0.191 Sum_probs=89.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP 221 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~ 221 (380)
.++..+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...+.. ++.++..|+.. .+
T Consensus 10 ~~~~~~~~~~-----~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~ 83 (124)
T TIGR02469 10 LTLSKLRLRP-----GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVS-NIVIVEGDAPEALE 83 (124)
T ss_pred HHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCC-ceEEEeccccccCh
Confidence 3445554443 7799999999999999999986 579999999999999999998877664 68999998765 23
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...++||.|++..... ...++++++++.|||||.+++..
T Consensus 84 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 84 DSLPEPDRVFIGGSGG---LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred hhcCCCCEEEECCcch---hHHHHHHHHHHHcCCCCEEEEEe
Confidence 3346899999876543 34689999999999999999864
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.2e-14 Score=143.82 Aligned_cols=105 Identities=21% Similarity=0.217 Sum_probs=91.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|..+..+++.. +.+|+|+|+|+.|++.|+++....+ .++.++++|+.+++ +++++||+|+++.+
T Consensus 419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn~v 496 (677)
T PRK06922 419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYSSI 496 (677)
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEchH
Confidence 7899999999999999998876 7899999999999999998875544 36888999998876 77899999999988
Q ss_pred cCCC-------------CCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 236 GEHM-------------PDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 236 l~~~-------------~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+|++ .+...++++++++|||||.+++.+..
T Consensus 497 LH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 497 LHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 8865 24578999999999999999998854
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-14 Score=125.44 Aligned_cols=135 Identities=12% Similarity=0.199 Sum_probs=96.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
++.+|||+|||+|.++..+++.. ...|+|+|+++.|++.+.+++... .++.++.+|+... ++ .++||+|++
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l-~~~~D~i~~ 147 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHV-VEKVDVIYQ 147 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhc-cccCCEEEE
Confidence 48999999999999999999976 468999999999999887776543 4789999998752 22 256999985
Q ss_pred ccccCCCCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 233 MESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 233 ~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
. +.++ ..+++++.++|||||.++++... ... ...... .. ..++..++++++
T Consensus 148 d-----~~~p~~~~~~L~~~~r~LKpGG~lvI~v~~-~~~---d~~~~~--~~---------------~~~~~~~~l~~a 201 (226)
T PRK04266 148 D-----VAQPNQAEIAIDNAEFFLKDGGYLLLAIKA-RSI---DVTKDP--KE---------------IFKEEIRKLEEG 201 (226)
T ss_pred C-----CCChhHHHHHHHHHHHhcCCCcEEEEEEec-ccc---cCcCCH--HH---------------HHHHHHHHHHHc
Confidence 3 2333 34689999999999999995211 000 000000 00 013445999999
Q ss_pred CCcEEEEEecCCC
Q 016921 310 SLEDIKAEDWSQN 322 (380)
Q Consensus 310 Gf~~v~~~~~~~~ 322 (380)
||+.++..+....
T Consensus 202 GF~~i~~~~l~p~ 214 (226)
T PRK04266 202 GFEILEVVDLEPY 214 (226)
T ss_pred CCeEEEEEcCCCC
Confidence 9999998876543
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.2e-13 Score=122.11 Aligned_cols=138 Identities=20% Similarity=0.211 Sum_probs=103.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------------CCCeEEEEcCCCCCCCC-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--------------ADKVSFQVGDALQQPFP- 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--------------~~~v~~~~~d~~~~~~~- 223 (380)
+.+|||+|||.|..+..||++ |.+|+|+|+|+..++.+.+ +.++ ..+|++.++|+.+++..
T Consensus 38 ~~rvL~~gCG~G~da~~LA~~-G~~V~avD~s~~Ai~~~~~---~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 38 GSRVLVPLCGKSLDMLWLAEQ-GHEVLGVELSELAVEQFFA---ENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCeEEEeCCCChHhHHHHHhC-CCeEEEEccCHHHHHHHHH---HcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 789999999999999999987 9999999999999997643 2222 25789999999987532
Q ss_pred CCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 224 DGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
...||.|+-..+++|++ ....+++.+.++|+|||.+++..+....... .+-+...+.++
T Consensus 114 ~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~~-------------------~gPp~~~~~~e 174 (218)
T PRK13255 114 LADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEEL-------------------AGPPFSVSDEE 174 (218)
T ss_pred CCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCccC-------------------CCCCCCCCHHH
Confidence 25899999999999995 3578999999999999976654443221100 01112468999
Q ss_pred HHHHHHhCCCcEEEEEecC
Q 016921 302 YVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~ 320 (380)
+.+++.. +|++...+...
T Consensus 175 l~~~~~~-~~~i~~~~~~~ 192 (218)
T PRK13255 175 VEALYAG-CFEIELLERQD 192 (218)
T ss_pred HHHHhcC-CceEEEeeecc
Confidence 9999963 37777665443
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.4e-14 Score=122.22 Aligned_cols=129 Identities=13% Similarity=0.204 Sum_probs=101.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|.++..++... +.+|+++|+++.+++.+++++...++..++.++.+|+.+. +...+.||+|++..
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~~ 119 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIGG 119 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEECC
Confidence 38999999999999999988764 4689999999999999999998888667899999998764 32246899999854
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
...+...+++.+.++|||||++++.... ..+..++...|+++|| .+
T Consensus 120 ---~~~~~~~~l~~~~~~LkpgG~lv~~~~~------------------------------~~~~~~~~~~l~~~g~-~~ 165 (198)
T PRK00377 120 ---GSEKLKEIISASWEIIKKGGRIVIDAIL------------------------------LETVNNALSALENIGF-NL 165 (198)
T ss_pred ---CcccHHHHHHHHHHHcCCCcEEEEEeec------------------------------HHHHHHHHHHHHHcCC-Ce
Confidence 2356788999999999999999874310 0124677788899999 44
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
++..+.
T Consensus 166 ~~~~~~ 171 (198)
T PRK00377 166 EITEVI 171 (198)
T ss_pred EEEEEe
Confidence 544443
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.6e-14 Score=130.45 Aligned_cols=94 Identities=30% Similarity=0.431 Sum_probs=79.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
..+|||+|||+|.++..+++.. +..++|+|+|+.+++.|+++. +++.+.++|+.++|+++++||+|++..
T Consensus 86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~I~~~~ 159 (272)
T PRK11088 86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDAIIRIY 159 (272)
T ss_pred CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeEEEEec
Confidence 6789999999999999998764 247999999999999987643 468999999999999999999999865
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.- ..++++.|+|||||++++....
T Consensus 160 ~~-------~~~~e~~rvLkpgG~li~~~p~ 183 (272)
T PRK11088 160 AP-------CKAEELARVVKPGGIVITVTPG 183 (272)
T ss_pred CC-------CCHHHHHhhccCCCEEEEEeCC
Confidence 42 2468899999999999998743
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=127.71 Aligned_cols=104 Identities=24% Similarity=0.303 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC--CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP--FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~--~~~~~fD~V~~~~ 234 (380)
+.+|||||||+|..+..+++.. +.+|+|+|+|+.+++.+++++...++ .++.++++|+ +.++ +++++||+|++.+
T Consensus 41 ~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 41 APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 7899999999999999999876 57899999999999999999988776 5799999999 6665 6678999999876
Q ss_pred ccCCCC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~--------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+.. ....+++++.++|||||.+++..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 543321 13678999999999999999975
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.9e-14 Score=124.52 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=92.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+...++..+.+.+ +.+|||||||+|..+..+++.. +.+|+++|+++.+++.+++++...+. .+++++.+|+
T Consensus 63 ~~~~~~~~~l~~~~-----g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~ 136 (212)
T PRK13942 63 HMVAIMCELLDLKE-----GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDG 136 (212)
T ss_pred HHHHHHHHHcCCCC-----cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCc
Confidence 35566666666554 8999999999999999998875 36999999999999999999988776 5799999998
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+.++||+|++.....+++ +.+.+.|||||++++..
T Consensus 137 ~~~~~~~~~fD~I~~~~~~~~~~------~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 137 TLGYEENAPYDRIYVTAAGPDIP------KPLIEQLKDGGIMVIPV 176 (212)
T ss_pred ccCCCcCCCcCEEEECCCcccch------HHHHHhhCCCcEEEEEE
Confidence 87655668999999987765543 46778999999998854
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.8e-15 Score=126.96 Aligned_cols=154 Identities=23% Similarity=0.294 Sum_probs=112.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++.++|..+.... -.++||+|||||..+..+... ..+++|+|+|.+|++.|.++ ++.+ ...++++..+
T Consensus 113 ~l~emI~~~~~g~-----F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~F 180 (287)
T COG4976 113 LLAEMIGKADLGP-----FRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLF 180 (287)
T ss_pred HHHHHHHhccCCc-----cceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHH
Confidence 6677777776543 689999999999999999876 67899999999999998763 3322 2344444322
Q ss_pred -C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 221 -P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 221 -~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+ ..++.||+|++..++.++.+.+.++--+...|+|||.+.++.-...... .-.+.+ ...+ -.+
T Consensus 181 l~~~~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~--~f~l~p---------s~Ry----AH~ 245 (287)
T COG4976 181 LEDLTQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDG--GFVLGP---------SQRY----AHS 245 (287)
T ss_pred hhhccCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCC--Ceecch---------hhhh----ccc
Confidence 1 3468899999999999999999999999999999999999753222110 000010 0011 135
Q ss_pred HHHHHHHHHhCCCcEEEEEecCC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
..-++.+++..||++|++++.+.
T Consensus 246 ~~YVr~~l~~~Gl~~i~~~~tti 268 (287)
T COG4976 246 ESYVRALLAASGLEVIAIEDTTI 268 (287)
T ss_pred hHHHHHHHHhcCceEEEeecccc
Confidence 67789999999999999876653
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.8e-14 Score=123.08 Aligned_cols=111 Identities=22% Similarity=0.295 Sum_probs=91.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..+++.+.+.+ +.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++ .+++++.+|+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~ 138 (215)
T TIGR00080 65 MVAMMTELLELKP-----GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGT 138 (215)
T ss_pred HHHHHHHHhCCCC-----cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcc
Confidence 4556666666554 8999999999999999999875 34699999999999999999998887 58999999997
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......++||+|++.....++ ...+.+.|+|||++++..
T Consensus 139 ~~~~~~~~fD~Ii~~~~~~~~------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 139 QGWEPLAPYDRIYVTAAGPKI------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred cCCcccCCCCEEEEcCCcccc------cHHHHHhcCcCcEEEEEE
Confidence 754345789999988766554 346788999999998854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=122.84 Aligned_cols=139 Identities=24% Similarity=0.386 Sum_probs=106.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.++..++..+. . .+.+|||+|||+|.++..+++.. +.+++|+|+++.+++.+++++...++. ++.++.+|+.
T Consensus 75 ~l~~~~l~~~~-~-----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~ 147 (251)
T TIGR03534 75 ELVEAALERLK-K-----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWF 147 (251)
T ss_pred HHHHHHHHhcc-c-----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchh
Confidence 34555555443 1 25689999999999999999876 679999999999999999999887774 7999999987
Q ss_pred CCCCCCCCccEEEeccccCC------CC--------------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEH------MP--------------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~------~~--------------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~ 272 (380)
+ ++++++||+|+++--... +. ....+++++.++|+|||.+++...
T Consensus 148 ~-~~~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~-------- 218 (251)
T TIGR03534 148 E-PLPGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIG-------- 218 (251)
T ss_pred c-cCcCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEEC--------
Confidence 6 456789999998532211 10 123678999999999999988531
Q ss_pred ccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+...+++.++|+++||+.+++.
T Consensus 219 -----------------------~~~~~~~~~~l~~~gf~~v~~~ 240 (251)
T TIGR03534 219 -----------------------YDQGEAVRALFEAAGFADVETR 240 (251)
T ss_pred -----------------------ccHHHHHHHHHHhCCCCceEEE
Confidence 1234678899999999987753
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=117.78 Aligned_cols=129 Identities=21% Similarity=0.349 Sum_probs=101.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..+++. +.+++|+|+|+.+++.+++++...++..+ +.+++.|+.+. +.+++||+|+++..+
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~-~~~~~~d~vi~n~p~ 100 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKN-GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP-FRGDKFDVILFNPPY 100 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhh-cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc-ccccCceEEEECCCc
Confidence 3789999999999999999988 89999999999999999999887776433 88999998763 445689999986544
Q ss_pred CCC---------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 237 EHM---------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 237 ~~~---------------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
.+. .....+++++.++|||||.+++....
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~------------------------------ 150 (188)
T PRK14968 101 LPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS------------------------------ 150 (188)
T ss_pred CCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc------------------------------
Confidence 321 11356899999999999998886521
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEe
Q 016921 296 WCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....+++.++++++||+++.+..
T Consensus 151 ~~~~~~l~~~~~~~g~~~~~~~~ 173 (188)
T PRK14968 151 LTGEDEVLEYLEKLGFEAEVVAE 173 (188)
T ss_pred cCCHHHHHHHHHHCCCeeeeeee
Confidence 12346788999999998776543
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-13 Score=112.54 Aligned_cols=126 Identities=25% Similarity=0.419 Sum_probs=106.7
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
.+|||+|||.|.+...|++.. ...++|+|.|+..++.|+..+...+.++.|+|.+.|+.+..+..++||+|+--+++..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DA 148 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDA 148 (227)
T ss_pred cceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceee
Confidence 399999999999999999985 4569999999999999999999999988899999999997777889999987666655
Q ss_pred C---CC-----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 239 M---PD-----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 239 ~---~~-----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+ ++ +...+..+.+.|+|||+++|..-. +|.+++.+.++..|
T Consensus 149 isLs~d~~~~r~~~Y~d~v~~ll~~~gifvItSCN-------------------------------~T~dELv~~f~~~~ 197 (227)
T KOG1271|consen 149 ISLSPDGPVGRLVVYLDSVEKLLSPGGIFVITSCN-------------------------------FTKDELVEEFENFN 197 (227)
T ss_pred eecCCCCcccceeeehhhHhhccCCCcEEEEEecC-------------------------------ccHHHHHHHHhcCC
Confidence 4 22 245788899999999999997521 57889999999999
Q ss_pred CcEEEE
Q 016921 311 LEDIKA 316 (380)
Q Consensus 311 f~~v~~ 316 (380)
|+....
T Consensus 198 f~~~~t 203 (227)
T KOG1271|consen 198 FEYLST 203 (227)
T ss_pred eEEEEe
Confidence 887654
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-13 Score=129.63 Aligned_cols=115 Identities=21% Similarity=0.245 Sum_probs=92.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
...++.....+ ++.+|||+|||+|.++..++.. +..++|+|+++.|+..++++++..++.. +.+.++|+.+++
T Consensus 171 a~~~~~l~~~~-----~g~~vLDp~cGtG~~lieaa~~-~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~ 243 (329)
T TIGR01177 171 ARAMVNLARVT-----EGDRVLDPFCGTGGFLIEAGLM-GAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLP 243 (329)
T ss_pred HHHHHHHhCCC-----CcCEEEECCCCCCHHHHHHHHh-CCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCC
Confidence 33444444444 3889999999999999887764 8999999999999999999998888764 899999999998
Q ss_pred CCCCCccEEEeccccC-------C-CCC-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGE-------H-MPD-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~-------~-~~~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++||+|++.--.. + ..+ ...+++++.++|||||++++..
T Consensus 244 ~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 244 LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 8788999999852111 1 111 4789999999999999998875
|
This family is found exclusively in the Archaea. |
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.2e-14 Score=122.70 Aligned_cols=104 Identities=27% Similarity=0.348 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (380)
..+|||||||+|.++..+++.. +..|+|+|+++.+++.|++++...++. ++.++++|+.+++ ++++++|.|++.+
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 5689999999999999999987 679999999999999999998888774 8999999997653 4567899999876
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+.... ..++++++++|||||.|++..
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54443221 578999999999999999876
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-13 Score=122.22 Aligned_cols=120 Identities=21% Similarity=0.259 Sum_probs=92.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++..++.+..+| .+||+|+++....
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~--------~~fD~Vvani~~~ 190 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD--------LKADVIVANILAN 190 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC--------CCcCEEEEcCcHH
Confidence 38899999999999998877653346999999999999999999887764444433322 2799999864322
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....++.++.++|||||.+++..+.. ...+++.+.+++.||+++...
T Consensus 191 ---~~~~l~~~~~~~LkpgG~lilsgi~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 191 ---PLLELAPDLARLLKPGGRLILSGILE------------------------------EQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred ---HHHHHHHHHHHhcCCCcEEEEEECcH------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 24678899999999999999986421 124678889999999988765
Q ss_pred e
Q 016921 318 D 318 (380)
Q Consensus 318 ~ 318 (380)
.
T Consensus 238 ~ 238 (250)
T PRK00517 238 E 238 (250)
T ss_pred E
Confidence 4
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-13 Score=124.56 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=83.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++..++.+...+... ..+++||+|+++....
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~--~~~~~fDlVvan~~~~ 236 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ--PIEGKADVIVANILAE 236 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc--ccCCCceEEEEecCHH
Confidence 37899999999999998888753458999999999999999999888877677777776433 3357899999875432
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
....++.++.++|||||+++++.+
T Consensus 237 ---~l~~ll~~~~~~LkpgG~li~sgi 260 (288)
T TIGR00406 237 ---VIKELYPQFSRLVKPGGWLILSGI 260 (288)
T ss_pred ---HHHHHHHHHHHHcCCCcEEEEEeC
Confidence 346789999999999999999864
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-12 Score=121.18 Aligned_cols=105 Identities=18% Similarity=0.190 Sum_probs=81.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCC----CccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDG----QFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~----~fD~V~ 231 (380)
+.+|||+|||+|..+..+++.. +.+|+++|+|++|++.+++++.......++.++++|+.+ ++++.. ...+++
T Consensus 64 ~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~ 143 (301)
T TIGR03438 64 GCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFF 143 (301)
T ss_pred CCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEE
Confidence 6789999999999999999886 579999999999999999987654322357788999976 333322 233444
Q ss_pred eccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..++++++. ...++++++++|+|||.+++..
T Consensus 144 ~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 144 PGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 5567787753 4679999999999999999754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.4e-14 Score=121.21 Aligned_cols=171 Identities=17% Similarity=0.249 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
-|.|..+-...++.... ....+|||||||.|.....+.+.. . ..|++.|.|+..++..+++..-. +.++
T Consensus 53 dR~wL~~Efpel~~~~~------~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~--e~~~ 124 (264)
T KOG2361|consen 53 DRNWLLREFPELLPVDE------KSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYD--ESRV 124 (264)
T ss_pred hhHHHHHhhHHhhCccc------cChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccc--hhhh
Confidence 45665555555543322 123489999999999999998865 3 68999999999999988765432 2456
Q ss_pred EEEEcCCCCC----CCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHH
Q 016921 211 SFQVGDALQQ----PFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (380)
Q Consensus 211 ~~~~~d~~~~----~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (380)
.-.+.|+... +.+.+++|+|++.++|..++ ....++.+++++|||||.|++-|++..+.....-.-. +.+
T Consensus 125 ~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~DlaqlRF~~~----~~i 200 (264)
T KOG2361|consen 125 EAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYDLAQLRFKKG----QCI 200 (264)
T ss_pred cccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccchHHHHhccCC----cee
Confidence 6666666542 45679999999999998884 3578999999999999999999986554321111000 001
Q ss_pred HH---HhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 285 KK---ICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 285 ~~---~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.. ........-+++.+++.+++.++||..++.
T Consensus 201 ~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 201 SENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred ecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 00 001111113689999999999999998764
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.50 E-value=9e-13 Score=112.43 Aligned_cols=103 Identities=31% Similarity=0.466 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..+++.. ..+|+++|+++.+++.+++++...++.. ++++..|..+. .++++||+|+++--++
T Consensus 32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~-~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEA-LPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTT-CCTTCEEEEEE---SB
T ss_pred CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-ccccccccccc-ccccceeEEEEccchh
Confidence 7899999999999999999976 4479999999999999999999998865 99999998763 3478999999986654
Q ss_pred CCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-.+ ...+++++.+.|||||.+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~ 140 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVI 140 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEe
Confidence 4433 4788999999999999997754
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.1e-12 Score=117.43 Aligned_cols=104 Identities=20% Similarity=0.298 Sum_probs=85.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec----
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---- 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~---- 233 (380)
..+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...++..++.|+++|+.+ +++.++||+|+++
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFE-PLAGQKIDIIVSNPPYI 193 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhc-cCcCCCccEEEECCCCC
Confidence 3699999999999999999986 579999999999999999999888876679999999876 3444589999985
Q ss_pred ---------cccCCCC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ---------ESGEHMP------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ---------~~l~~~~------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++.|-+ ....+++++.+.|+|||++++..
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 1222222 24578899999999999988754
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-12 Score=117.89 Aligned_cols=136 Identities=12% Similarity=0.080 Sum_probs=95.3
Q ss_pred CCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEE
Q 016921 156 TKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLV 230 (380)
Q Consensus 156 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V 230 (380)
..++.+|||+|||+|.++..+++.. ...|+++|+++.+++...+.+... .|+.++..|+... ....++||+|
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV 206 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVI 206 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEE
Confidence 3568999999999999999999987 358999999998665544444322 4789999998652 2234689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHH----HHHH
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADY----VKLL 306 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ll 306 (380)
++... ...+...++.++.++|||||.|++.. -.... ..-.+++++ .++|
T Consensus 207 ~~Dva--~pdq~~il~~na~r~LKpGG~~vI~i-ka~~i------------------------d~g~~pe~~f~~ev~~L 259 (293)
T PTZ00146 207 FADVA--QPDQARIVALNAQYFLKNGGHFIISI-KANCI------------------------DSTAKPEVVFASEVQKL 259 (293)
T ss_pred EEeCC--CcchHHHHHHHHHHhccCCCEEEEEE-ecccc------------------------ccCCCHHHHHHHHHHHH
Confidence 98763 22234456679999999999999942 11110 001122332 3789
Q ss_pred HhCCCcEEEEEecCC
Q 016921 307 QSLSLEDIKAEDWSQ 321 (380)
Q Consensus 307 ~~aGf~~v~~~~~~~ 321 (380)
+++||+.++..++..
T Consensus 260 ~~~GF~~~e~v~L~P 274 (293)
T PTZ00146 260 KKEGLKPKEQLTLEP 274 (293)
T ss_pred HHcCCceEEEEecCC
Confidence 999999988776543
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.9e-12 Score=118.17 Aligned_cols=104 Identities=23% Similarity=0.342 Sum_probs=84.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++..++.++++|+.+. +++++||+|+++=
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~-~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA-LPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc-cCCCCccEEEECCCCC
Confidence 5789999999999999999876 6799999999999999999999888877899999998652 3456899999851
Q ss_pred ---ccC-------CCC------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 ---SGE-------HMP------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ---~l~-------~~~------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+. |-+ ....+++++.++|+|||++++..
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 111 111 12467889999999999988743
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=124.01 Aligned_cols=104 Identities=20% Similarity=0.233 Sum_probs=89.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
+..+||||||+|.++..+|... +..++|+|+++.+++.+.+++...++ .++.++++|+..+ .++++++|.|++.+.
T Consensus 123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 6689999999999999999987 67999999999999999999988887 4799999999764 467899999998654
Q ss_pred cCCCCCH------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|...+ ..++++++|+|+|||.+.+.+
T Consensus 202 dPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 202 VPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 4433222 589999999999999999976
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1e-12 Score=124.52 Aligned_cols=104 Identities=22% Similarity=0.258 Sum_probs=85.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
+.+|||+|||+|.++..++++. +.+|+++|+|+.+++.++++++..+.. .++++...|.... ++.++||+|+++--
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~-~~~~~fDlIlsNPP 307 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG-VEPFRFNAVLCNPP 307 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc-CCCCCEEEEEECcC
Confidence 5699999999999999999987 689999999999999999998776543 3689999887653 34568999999755
Q ss_pred cCCC---CC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHM---PD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~---~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.. .+ ..++++.+.++|+|||.|++..
T Consensus 308 fh~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 308 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred cccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 5433 22 3578999999999999999985
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.3e-13 Score=116.26 Aligned_cols=95 Identities=21% Similarity=0.293 Sum_probs=77.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+|||||||+|.++..+++.. ...|+|+|+++ | ... +++.++++|+.+.+ +.+++|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~ 118 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPI-VGVDFLQGDFRDELVLKALLERVGDSKV 118 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCC-CCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence 48899999999999999999986 36899999998 2 122 36899999998853 567899
Q ss_pred cEEEeccccCCCCCH-----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|++..+.++..++ ..+++++.++|||||.+++..+
T Consensus 119 D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~ 166 (209)
T PRK11188 119 QVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVF 166 (209)
T ss_pred CEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEe
Confidence 999998766655332 4689999999999999999775
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2e-12 Score=114.42 Aligned_cols=111 Identities=16% Similarity=0.174 Sum_probs=88.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
....++..+.+.+ +.+|||||||+|.++..+++. ..+|+++|+++.+++.+++++...++. ++++..+|..+.
T Consensus 66 ~~~~l~~~l~~~~-----~~~VLeiG~GsG~~t~~la~~-~~~v~~vd~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 138 (212)
T PRK00312 66 MVARMTELLELKP-----GDRVLEIGTGSGYQAAVLAHL-VRRVFSVERIKTLQWEAKRRLKQLGLH-NVSVRHGDGWKG 138 (212)
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCccHHHHHHHHH-hCEEEEEeCCHHHHHHHHHHHHHCCCC-ceEEEECCcccC
Confidence 3445555555543 899999999999999988876 468999999999999999999887773 699999998664
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..+.++||+|++...+.++ .+.+.+.|+|||.+++...
T Consensus 139 ~~~~~~fD~I~~~~~~~~~------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 139 WPAYAPFDRILVTAAAPEI------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCcCCCcCEEEEccCchhh------hHHHHHhcCCCcEEEEEEc
Confidence 3234789999998766554 3567899999999998653
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-12 Score=118.07 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=97.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.+++..++.....|+|+|++|..++.|+.++..+++...+.....+....+ ..++||+|+++= |
T Consensus 162 ~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~-~~~~~DvIVANI-L- 238 (300)
T COG2264 162 KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVP-ENGPFDVIVANI-L- 238 (300)
T ss_pred CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhc-ccCcccEEEehh-h-
Confidence 3899999999999999999886345699999999999999999999887643333333333322 346999999864 2
Q ss_pred CCCC-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 238 HMPD-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 238 ~~~~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.+ ...+...+.+.|||||+++++.+.. ...+.+.+.++++||+++++
T Consensus 239 --A~vl~~La~~~~~~lkpgg~lIlSGIl~------------------------------~q~~~V~~a~~~~gf~v~~~ 286 (300)
T COG2264 239 --AEVLVELAPDIKRLLKPGGRLILSGILE------------------------------DQAESVAEAYEQAGFEVVEV 286 (300)
T ss_pred --HHHHHHHHHHHHHHcCCCceEEEEeehH------------------------------hHHHHHHHHHHhCCCeEeEE
Confidence 23 2578889999999999999987321 01467888999999999987
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
..-
T Consensus 287 ~~~ 289 (300)
T COG2264 287 LER 289 (300)
T ss_pred Eec
Confidence 544
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-13 Score=107.70 Aligned_cols=105 Identities=30% Similarity=0.505 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l 236 (380)
|.+|||+|||+|.++..+++....+++|+|+++..++.++.++...++..+++++++|+.+.. +++++||+|+++--.
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 468999999999999999988448999999999999999999999888788999999998864 678999999997554
Q ss_pred CCCC--------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMP--------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~--------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.... ....+++++.++|||||.+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 4321 13678999999999999999865
|
... |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.3e-12 Score=115.06 Aligned_cols=126 Identities=26% Similarity=0.401 Sum_probs=96.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.+++++. .....++.++.+|+.+. +++++||+|+++--.
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~-~~~~~fD~Iv~npPy 185 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEP-LPGGRFDLIVSNPPY 185 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCc-CCCCceeEEEECCCc
Confidence 37899999999999999999986 6899999999999999999887 33346899999998653 345789999984211
Q ss_pred C--------------CC------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc
Q 016921 237 E--------------HM------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (380)
Q Consensus 237 ~--------------~~------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (380)
. |- .....+++++.++|+|||++++.. +
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g------------------------- 239 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-G------------------------- 239 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-C-------------------------
Confidence 0 00 113567888899999999998843 1
Q ss_pred cCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 291 YYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+...+.+.+++++.||..++.
T Consensus 240 -----~~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 240 -----YDQGEAVRALLAAAGFADVET 260 (275)
T ss_pred -----chHHHHHHHHHHhCCCceeEE
Confidence 012356888999999987665
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-12 Score=111.13 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=86.0
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF 222 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~ 222 (380)
++..+.+.. +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.+++++...++ .+++++.+|+.+ ++.
T Consensus 32 l~~~l~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 32 LISQLRLEP-----DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhh
Confidence 445554443 8899999999999999998765 67999999999999999999988777 479999999865 221
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....+|.|+... ..+...+++++.++|+|||.+++..
T Consensus 106 ~~~~~d~v~~~~----~~~~~~~l~~~~~~LkpgG~li~~~ 142 (196)
T PRK07402 106 LAPAPDRVCIEG----GRPIKEILQAVWQYLKPGGRLVATA 142 (196)
T ss_pred CCCCCCEEEEEC----CcCHHHHHHHHHHhcCCCeEEEEEe
Confidence 123467765532 2356789999999999999999976
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=103.10 Aligned_cols=133 Identities=17% Similarity=0.132 Sum_probs=105.6
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (380)
.+.++.+.+ +.+++|||||||..+..++... .++|+++|-++++++..++++.+.++ +|+.++.+++.+.--.
T Consensus 26 ~ls~L~~~~-----g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~-~n~~vv~g~Ap~~L~~ 99 (187)
T COG2242 26 TLSKLRPRP-----GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGV-DNLEVVEGDAPEALPD 99 (187)
T ss_pred HHHhhCCCC-----CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCC-CcEEEEeccchHhhcC
Confidence 345555554 9999999999999999999544 68999999999999999999999995 6999999999774212
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
..+||.|+.... . +.+.+++.+...|||||++++.-.. + -+.....
T Consensus 100 ~~~~daiFIGGg-~---~i~~ile~~~~~l~~ggrlV~nait------------------l------------E~~~~a~ 145 (187)
T COG2242 100 LPSPDAIFIGGG-G---NIEEILEAAWERLKPGGRLVANAIT------------------L------------ETLAKAL 145 (187)
T ss_pred CCCCCEEEECCC-C---CHHHHHHHHHHHcCcCCeEEEEeec------------------H------------HHHHHHH
Confidence 227999999887 3 5678999999999999999996521 1 1234566
Q ss_pred HHHHhCCC-cEEEEE
Q 016921 304 KLLQSLSL-EDIKAE 317 (380)
Q Consensus 304 ~ll~~aGf-~~v~~~ 317 (380)
+.+++.|+ +++++.
T Consensus 146 ~~~~~~g~~ei~~v~ 160 (187)
T COG2242 146 EALEQLGGREIVQVQ 160 (187)
T ss_pred HHHHHcCCceEEEEE
Confidence 78899999 666553
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=5e-12 Score=113.43 Aligned_cols=124 Identities=18% Similarity=0.224 Sum_probs=95.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..++.+. +.+|+|+|+++.+++.++++. +++.++++|+.+.. ...+||+|+++-.+.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~-~~~kFDlIIsNPPF~ 137 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFE-SNEKFDVVISNPPFG 137 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhc-ccCCCcEEEEcCCcc
Confidence 5789999999999999888865 579999999999999998753 36899999998865 347899999987777
Q ss_pred CCCC--------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 238 HMPD--------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 238 ~~~~--------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
+... ..+.+.....+|+|+|.+++.-.+.+. + +.-.
T Consensus 138 ~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~----------------------y--~~sl 193 (279)
T PHA03411 138 KINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPY----------------------Y--DGTM 193 (279)
T ss_pred ccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEecccc----------------------c--cccC
Confidence 7521 134567778889999977776311110 0 1115
Q ss_pred CHHHHHHHHHhCCCcE
Q 016921 298 STADYVKLLQSLSLED 313 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~ 313 (380)
++++++++|+++||+.
T Consensus 194 ~~~~y~~~l~~~g~~~ 209 (279)
T PHA03411 194 KSNKYLKWSKQTGLVT 209 (279)
T ss_pred CHHHHHHHHHhcCcEe
Confidence 7899999999999984
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.4e-12 Score=116.49 Aligned_cols=103 Identities=21% Similarity=0.357 Sum_probs=84.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++..++.++++|+.+. +++++||+|+++-
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~-l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA-LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh-CCCCCccEEEECCCCC
Confidence 3689999999999999999886 6899999999999999999999888777899999998652 3456899999851
Q ss_pred ---c-------cCCCCC------------HHHHHHHHHHhcCCCcEEEEE
Q 016921 235 ---S-------GEHMPD------------KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ---~-------l~~~~~------------~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. +.|-+. ...+++++.+.|+|||.+++.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 0 111111 246789999999999999884
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.1e-11 Score=117.68 Aligned_cols=140 Identities=20% Similarity=0.262 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
...+++.++..+. ++.+|||+|||+|.++..++... +.+|+|+|+|+.+++.|++++...+. ++.++++|
T Consensus 238 TE~LVe~aL~~l~-------~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~--rV~fi~gD 308 (423)
T PRK14966 238 TEHLVEAVLARLP-------ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA--RVEFAHGS 308 (423)
T ss_pred HHHHHHHhhhccC-------CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC--cEEEEEcc
Confidence 3445555554432 25699999999999999998875 68999999999999999999987764 79999999
Q ss_pred CCCCCCC-CCCccEEEeccccC-----CC----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 016921 217 ALQQPFP-DGQFDLVWSMESGE-----HM----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (380)
Q Consensus 217 ~~~~~~~-~~~fD~V~~~~~l~-----~~----------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~ 270 (380)
+.+..++ .++||+|+++--.. .. .| ...+++.+.+.|+|||.+++.. +
T Consensus 309 l~e~~l~~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi-G----- 382 (423)
T PRK14966 309 WFDTDMPSEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH-G----- 382 (423)
T ss_pred hhccccccCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE-C-----
Confidence 8764332 46899999953110 00 01 2356777788999999987643 1
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+...+.+.+++++.||..+++.
T Consensus 383 -------------------------~~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 383 -------------------------FDQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred -------------------------ccHHHHHHHHHHHCCCcEEEEE
Confidence 0135678899999999877653
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-12 Score=112.68 Aligned_cols=132 Identities=21% Similarity=0.252 Sum_probs=108.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
..+|||+|||+|..++.++++. .++++|||+++.+.+.|++.++.+++.++++++++|+.++. ....+||+|+|+=-
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 7899999999999999999986 69999999999999999999999999999999999998863 34457999999522
Q ss_pred cCCC------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 236 GEHM------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 236 l~~~------------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
..-. .+.+++++.+..+|||||.+.++... .
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~-------------------------------e 173 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP-------------------------------E 173 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH-------------------------------H
Confidence 2111 13468999999999999999997520 1
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCC
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
...++.+++.+.+|+...+..+..
T Consensus 174 rl~ei~~~l~~~~~~~k~i~~V~p 197 (248)
T COG4123 174 RLAEIIELLKSYNLEPKRIQFVYP 197 (248)
T ss_pred HHHHHHHHHHhcCCCceEEEEecC
Confidence 245778889999998887765543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.5e-12 Score=121.15 Aligned_cols=101 Identities=24% Similarity=0.306 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||+|||+|.++..+++.. +.+|+++|+|+.+++.++++++..++. .+++..|.... ..++||+|+++-.+|
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~--~~~~fDlIvsNPPFH 272 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSD--IKGRFDMIISNPPFH 272 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEcccccc--cCCCccEEEECCCcc
Confidence 5689999999999999999886 579999999999999999999887763 56777887653 257899999988777
Q ss_pred CC-----CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HM-----PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~-----~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. .....+++++.+.|||||.++++.
T Consensus 273 ~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 273 DGIQTSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred CCccccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 53 234789999999999999999876
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.2e-12 Score=118.33 Aligned_cols=145 Identities=21% Similarity=0.291 Sum_probs=102.5
Q ss_pred CcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 016921 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK 209 (380)
Q Consensus 130 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 209 (380)
.++.-.....++.-+++..... ++.+|||+|||+|.+++..++....+|+|+|+++..++.|++++..+++..+
T Consensus 139 AFGTG~H~TT~lcl~~l~~~~~------~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~ 212 (295)
T PF06325_consen 139 AFGTGHHPTTRLCLELLEKYVK------PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDR 212 (295)
T ss_dssp SS-SSHCHHHHHHHHHHHHHSS------TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTC
T ss_pred cccCCCCHHHHHHHHHHHHhcc------CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCee
Confidence 3444344444555555555532 3789999999999999998886345899999999999999999999999876
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (380)
+.+. ...+ ...++||+|+++-... -...++..+.++|+|||+++++.+..
T Consensus 213 ~~v~--~~~~--~~~~~~dlvvANI~~~---vL~~l~~~~~~~l~~~G~lIlSGIl~----------------------- 262 (295)
T PF06325_consen 213 IEVS--LSED--LVEGKFDLVVANILAD---VLLELAPDIASLLKPGGYLILSGILE----------------------- 262 (295)
T ss_dssp EEES--CTSC--TCCS-EEEEEEES-HH---HHHHHHHHCHHHEEEEEEEEEEEEEG-----------------------
T ss_pred EEEE--Eecc--cccccCCEEEECCCHH---HHHHHHHHHHHhhCCCCEEEEccccH-----------------------
Confidence 6553 2222 2358999999864322 23567788999999999999987421
Q ss_pred ccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 290 AYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
...+++.+.+++ ||+.++...
T Consensus 263 -------~~~~~v~~a~~~-g~~~~~~~~ 283 (295)
T PF06325_consen 263 -------EQEDEVIEAYKQ-GFELVEERE 283 (295)
T ss_dssp -------GGHHHHHHHHHT-TEEEEEEEE
T ss_pred -------HHHHHHHHHHHC-CCEEEEEEE
Confidence 124677788877 999887654
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.4e-12 Score=108.29 Aligned_cols=110 Identities=19% Similarity=0.303 Sum_probs=95.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++..+++.+.+++ +.+|||||||+|..+..|++. ..+|+.+|..+...+.|++++...|+. ||.++++|...-
T Consensus 60 ~vA~m~~~L~~~~-----g~~VLEIGtGsGY~aAvla~l-~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G 132 (209)
T COG2518 60 MVARMLQLLELKP-----GDRVLEIGTGSGYQAAVLARL-VGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKG 132 (209)
T ss_pred HHHHHHHHhCCCC-----CCeEEEECCCchHHHHHHHHH-hCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence 6777888887765 999999999999999999987 459999999999999999999999985 599999998764
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-+..+||.|+...+...+|+ .+.+.||+||++++-.
T Consensus 133 ~~~~aPyD~I~Vtaaa~~vP~------~Ll~QL~~gGrlv~Pv 169 (209)
T COG2518 133 WPEEAPYDRIIVTAAAPEVPE------ALLDQLKPGGRLVIPV 169 (209)
T ss_pred CCCCCCcCEEEEeeccCCCCH------HHHHhcccCCEEEEEE
Confidence 334589999999988887764 4778899999999965
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.3e-13 Score=124.93 Aligned_cols=217 Identities=32% Similarity=0.446 Sum_probs=156.2
Q ss_pred HHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
...+.+.++++|+...++|..-|+..+|++-+ ..... ... .......+..+.. ...++.+++|+|||-|.
T Consensus 54 ~~~~~e~~~~~y~~~~dl~~~~w~~~~h~~~~-~e~~~----~~~--~~~~~~~~~~l~~---~~~~~~~~~~~~~g~~~ 123 (364)
T KOG1269|consen 54 TEDLPEQIAKYYNNSTDLYERNWGQSFHFGRI-PEGNS----NEM--FWIRHEGIVALRE---SCFPGSKVLDVGTGVGG 123 (364)
T ss_pred ccccchHHHHHhcccchhhhhhhccchhccCc-cchhH----HHH--HHHhhcchHHHhh---cCcccccccccCcCcCc
Confidence 55667779999999999999999999998766 22111 111 1111111111111 11346789999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (380)
...+++.-.++.++|+|+++..+..+.......++..+..++.+|+.+.|++++.||.+.+..+.+|.++...++.+++|
T Consensus 124 ~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~r 203 (364)
T KOG1269|consen 124 PSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCHAPDLEKVYAEIYR 203 (364)
T ss_pred hhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeecccCCcHHHHHHHHhc
Confidence 99999886579999999999999999998888888777888999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
+++|||.+++.++........... ........+..+-..+....-..+..+++..||..+..+....
T Consensus 204 v~kpGG~~i~~e~i~~~~~~~~~~---~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl~ 270 (364)
T KOG1269|consen 204 VLKPGGLFIVKEWIKTAKLKKPNS---EHVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDLA 270 (364)
T ss_pred ccCCCceEEeHHHHHhhhccCCCc---ccccccCceeccccccceeccccHHHHHhhccchhhhhccccc
Confidence 999999999998865432211110 1111222222222222223445677888899999887554443
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-12 Score=111.67 Aligned_cols=100 Identities=18% Similarity=0.190 Sum_probs=74.6
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~ 239 (380)
..++|+|||+|..++.+++. ..+|+|+|+|+.|++.|++................+..++--.+++.|+|++..++|++
T Consensus 35 ~~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 35 RLAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWF 113 (261)
T ss_pred ceEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhh
Confidence 37999999999888888887 57899999999999988875432221111222333333332237999999999999988
Q ss_pred CCHHHHHHHHHHhcCCCcEEEE
Q 016921 240 PDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
|.+.++++++|+||+.|-++.
T Consensus 114 -dle~fy~~~~rvLRk~Gg~ia 134 (261)
T KOG3010|consen 114 -DLERFYKEAYRVLRKDGGLIA 134 (261)
T ss_pred -chHHHHHHHHHHcCCCCCEEE
Confidence 888999999999998874443
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.2e-11 Score=111.67 Aligned_cols=145 Identities=24% Similarity=0.274 Sum_probs=102.6
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
.++....... ..+|||||+|+|.++..+++++ +.+++..|+ |..++.+++ .++++++.+|+. .++
T Consensus 91 ~~~~~~d~~~-----~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f-~~~ 156 (241)
T PF00891_consen 91 ILLEAFDFSG-----FKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF-DPL 156 (241)
T ss_dssp HHHHHSTTTT-----SSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT-TCC
T ss_pred hhhccccccC-----ccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH-hhh
Confidence 3444444443 6799999999999999999998 899999999 888888877 379999999998 566
Q ss_pred CCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCC--cEEEEEeccCCCCCCCccccc-hHHHHHHHHHhhccCCCCCC
Q 016921 223 PDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPA--GTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~Lkpg--G~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 297 (380)
|. +|+|++.+++|++++. ..+|+++++.|+|| |+|+|.+...+.......... ....++.--.... + .-+
T Consensus 157 P~--~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~~~~~~~~~~dl~ml~~~~-G--~~r 231 (241)
T PF00891_consen 157 PV--ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGPPSAEMDALFDLNMLVLTG-G--KER 231 (241)
T ss_dssp SS--ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSHHHHHHHHHHHHHHHHHHS-S--S-E
T ss_pred cc--ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCchHHHHHHHHHHHHHHhcC-C--CCc
Confidence 65 9999999999999764 67999999999999 999999987554332221110 0111111111111 2 236
Q ss_pred CHHHHHHHHH
Q 016921 298 STADYVKLLQ 307 (380)
Q Consensus 298 ~~~~~~~ll~ 307 (380)
|.++|++||+
T Consensus 232 t~~e~~~ll~ 241 (241)
T PF00891_consen 232 TEEEWEALLK 241 (241)
T ss_dssp EHHHHHHHHH
T ss_pred CHHHHHHHhC
Confidence 8999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.7e-12 Score=117.93 Aligned_cols=111 Identities=14% Similarity=0.261 Sum_probs=89.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++..+++.+.+++ +.+|||||||+|.++..+++..+ ..|+++|+++.+++.|++++...+. .++.++++|+.
T Consensus 68 l~a~ll~~L~i~~-----g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~ 141 (322)
T PRK13943 68 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGY 141 (322)
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChh
Confidence 4555666665544 88999999999999999998763 4799999999999999999988877 57999999987
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......++||+|++...+.++ ...+.+.|+|||.+++..
T Consensus 142 ~~~~~~~~fD~Ii~~~g~~~i------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 142 YGVPEFAPYDVIFVTVGVDEV------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred hcccccCCccEEEECCchHHh------HHHHHHhcCCCCEEEEEe
Confidence 765445789999998666544 235678999999988854
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-12 Score=106.68 Aligned_cols=117 Identities=22% Similarity=0.332 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
.+.++.+..++.+.++. ..+.-|||||||+|..+..+.+. |..++|+|+|+.|++.|.++--+ -.++.+|
T Consensus 32 IQ~em~eRaLELLalp~---~~~~~iLDIGCGsGLSg~vL~~~-Gh~wiGvDiSpsML~~a~~~e~e------gdlil~D 101 (270)
T KOG1541|consen 32 IQAEMAERALELLALPG---PKSGLILDIGCGSGLSGSVLSDS-GHQWIGVDISPSMLEQAVERELE------GDLILCD 101 (270)
T ss_pred ehHHHHHHHHHHhhCCC---CCCcEEEEeccCCCcchheeccC-CceEEeecCCHHHHHHHHHhhhh------cCeeeee
Confidence 44556666677666543 34778999999999999988876 78999999999999999874322 2356777
Q ss_pred CC-CCCCCCCCccEEEeccccCCCC-------CH----HHHHHHHHHhcCCCcEEEEEe
Q 016921 217 AL-QQPFPDGQFDLVWSMESGEHMP-------DK----SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~-~~~~~~~~fD~V~~~~~l~~~~-------~~----~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+- .+||..++||.+++..++.++- ++ ..++..++.+|++|++.++.-
T Consensus 102 MG~GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~Qf 160 (270)
T KOG1541|consen 102 MGEGLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQF 160 (270)
T ss_pred cCCCCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEEEe
Confidence 64 4799999999999988887761 22 357888999999999999865
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-11 Score=107.99 Aligned_cols=169 Identities=24% Similarity=0.320 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G--AKCQGITLSPVQAQRANALAAARGLADKVS 211 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~ 211 (380)
.....+++.+.+..+... ..+.+||||+||.|...+...... . .+|...|.|+..++.+++.+++.|+.+-++
T Consensus 116 k~~l~~~i~~ai~~L~~~----g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~ 191 (311)
T PF12147_consen 116 KVHLEELIRQAIARLREQ----GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIAR 191 (311)
T ss_pred HHHHHHHHHHHHHHHHhc----CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceE
Confidence 344455555555544322 247899999999999998888776 2 689999999999999999999999987679
Q ss_pred EEEcCCCCCC-CC--CCCccEEEeccccCCCCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHH
Q 016921 212 FQVGDALQQP-FP--DGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK 285 (380)
Q Consensus 212 ~~~~d~~~~~-~~--~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (380)
|.++|+.+.. +. +-..|+++.++.++.++|. ...+..+.+.+.|||+++.+.- |.+..+.... ..+.
T Consensus 192 f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQ------PwHPQle~IA-r~Lt 264 (311)
T PF12147_consen 192 FEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQ------PWHPQLEMIA-RVLT 264 (311)
T ss_pred EEecCCCCHhHhhccCCCCCEEEEecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCC------CCCcchHHHH-HHHh
Confidence 9999998742 11 3457999999999999884 4678899999999999999752 2222222111 1111
Q ss_pred HH--hhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 286 KI--CDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 286 ~~--~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
.- ...| +-+..++.++.+++++|||+-++
T Consensus 265 sHr~g~~W-vMRrRsq~EmD~Lv~~aGF~K~~ 295 (311)
T PF12147_consen 265 SHRDGKAW-VMRRRSQAEMDQLVEAAGFEKID 295 (311)
T ss_pred cccCCCce-EEEecCHHHHHHHHHHcCCchhh
Confidence 11 1122 23458999999999999998554
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-11 Score=107.25 Aligned_cols=110 Identities=21% Similarity=0.363 Sum_probs=96.6
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
..++..+++.+ +.+|||.|.|+|.++..|+... ..+|+.+|+.++..+.|++++++.++.+++.+..+|+.+.
T Consensus 84 ~~I~~~~gi~p-----g~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 84 GYIVARLGISP-----GSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred HHHHHHcCCCC-----CCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 34556667765 9999999999999999999866 3799999999999999999999989988899999999887
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-++ +.||+|+. -+++|-.+++.+.++|||||.+++..
T Consensus 159 ~~~-~~vDav~L-----Dmp~PW~~le~~~~~Lkpgg~~~~y~ 195 (256)
T COG2519 159 IDE-EDVDAVFL-----DLPDPWNVLEHVSDALKPGGVVVVYS 195 (256)
T ss_pred ccc-cccCEEEE-----cCCChHHHHHHHHHHhCCCcEEEEEc
Confidence 654 48999987 45899999999999999999999975
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-12 Score=111.40 Aligned_cols=112 Identities=23% Similarity=0.353 Sum_probs=88.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.++..+++.+.+++ +.+|||||||+|..+..++...+ ..|+++|+.+...+.|++++...+. .++.++++|.
T Consensus 59 ~~~a~~l~~L~l~p-----g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg 132 (209)
T PF01135_consen 59 SMVARMLEALDLKP-----GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDG 132 (209)
T ss_dssp HHHHHHHHHTTC-T-----T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-G
T ss_pred HHHHHHHHHHhcCC-----CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcch
Confidence 46777888887765 99999999999999999998764 4799999999999999999998877 4899999998
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+..+||.|++..+...++ ..+.+.|++||+|++-.
T Consensus 133 ~~g~~~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi 172 (209)
T PF01135_consen 133 SEGWPEEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPI 172 (209)
T ss_dssp GGTTGGG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEE
T ss_pred hhccccCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEE
Confidence 76433457899999998876553 34778899999999954
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.3e-11 Score=106.20 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=87.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH-----------cCCCCCeEEEEcCCCCCCCC---C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA-----------RGLADKVSFQVGDALQQPFP---D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~-----------~~~~~~v~~~~~d~~~~~~~---~ 224 (380)
+.+||+.|||.|..+..|+++ |.+|+|+|+|+..++.+.+.... ..-..++++.++|+.+++.. .
T Consensus 44 ~~rvLvPgCGkg~D~~~LA~~-G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~ 122 (226)
T PRK13256 44 SSVCLIPMCGCSIDMLFFLSK-GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNL 122 (226)
T ss_pred CCeEEEeCCCChHHHHHHHhC-CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccccc
Confidence 789999999999999999997 89999999999999987552100 00124789999999998632 2
Q ss_pred CCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 225 GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+.||+|+-..++++++. ..+.++.+.++|+|||.+++..+.
T Consensus 123 ~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~ 165 (226)
T PRK13256 123 PVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVME 165 (226)
T ss_pred CCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEe
Confidence 68999999999999953 578999999999999999998763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.1e-11 Score=119.72 Aligned_cols=126 Identities=15% Similarity=0.171 Sum_probs=97.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
+.+|||+|||+|.++..++... +.+|+++|+|+.+++.|++++...++.+++.++++|+.+. ++.++||+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~-~~~~~fDlIvsNPPYi 217 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN-IEKQKFDFIVSNPPYI 217 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh-CcCCCccEEEECCCCC
Confidence 5689999999999999998876 6899999999999999999998888777899999997652 3456899999842
Q ss_pred -----------ccCCCC--------C----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016921 235 -----------SGEHMP--------D----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (380)
Q Consensus 235 -----------~l~~~~--------~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (380)
+..|-+ | ...+++.+.++|+|||.+++.. +.
T Consensus 218 ~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEi-g~------------------------- 271 (506)
T PRK01544 218 SHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEI-GF------------------------- 271 (506)
T ss_pred CchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEE-CC-------------------------
Confidence 111111 1 2356788899999999988742 11
Q ss_pred CCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 292 YLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
...+.+.+++++.||..+.+
T Consensus 272 -----~q~~~v~~~~~~~g~~~~~~ 291 (506)
T PRK01544 272 -----KQEEAVTQIFLDHGYNIESV 291 (506)
T ss_pred -----chHHHHHHHHHhcCCCceEE
Confidence 13467778888889986654
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-11 Score=103.09 Aligned_cols=157 Identities=18% Similarity=0.179 Sum_probs=113.2
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--------CCCCccEE
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--------PDGQFDLV 230 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------~~~~fD~V 230 (380)
.+|||||||||..+.++++.+ .....-.|+++..+...+......+++.-..-+..|+...+. ..++||+|
T Consensus 27 ~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i 106 (204)
T PF06080_consen 27 TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAI 106 (204)
T ss_pred ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCccee
Confidence 369999999999999999998 788999999999988888877777764333445666666432 24589999
Q ss_pred EeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016921 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (380)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (380)
++..++|-.+ ..+.+++.+.++|++||.|++......+...... -+......++.....+++ .+.+++.++.++
T Consensus 107 ~~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~-SN~~FD~sLr~rdp~~Gi---RD~e~v~~lA~~ 182 (204)
T PF06080_consen 107 FCINMLHISPWSAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSE-SNAAFDASLRSRDPEWGI---RDIEDVEALAAA 182 (204)
T ss_pred eehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCc-HHHHHHHHHhcCCCCcCc---cCHHHHHHHHHH
Confidence 9999997764 3478999999999999999998754333211111 111122233333334444 478999999999
Q ss_pred CCCcEEEEEecC
Q 016921 309 LSLEDIKAEDWS 320 (380)
Q Consensus 309 aGf~~v~~~~~~ 320 (380)
+|++.++..+..
T Consensus 183 ~GL~l~~~~~MP 194 (204)
T PF06080_consen 183 HGLELEEDIDMP 194 (204)
T ss_pred CCCccCcccccC
Confidence 999988765544
|
The function of this family is unknown. |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-11 Score=108.24 Aligned_cols=139 Identities=24% Similarity=0.360 Sum_probs=100.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C-----CCCCeEEEEcCCCCCCCCC-CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G-----LADKVSFQVGDALQQPFPD-GQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~------~-----~~~~v~~~~~d~~~~~~~~-~~ 226 (380)
+.+||..|||.|..+..|+++ |.+|+|+|+|+..++.+.+..... + -..+|++.++|+.+++... ++
T Consensus 38 ~~rvLvPgCG~g~D~~~La~~-G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~ 116 (218)
T PF05724_consen 38 GGRVLVPGCGKGYDMLWLAEQ-GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGK 116 (218)
T ss_dssp SEEEEETTTTTSCHHHHHHHT-TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHS
T ss_pred CCeEEEeCCCChHHHHHHHHC-CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhhcCC
Confidence 789999999999999999997 899999999999999885432210 0 1246899999999975333 58
Q ss_pred ccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016921 227 FDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 227 fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
||+|+=..+++.++ ...+..+.+.++|+|||.+++..+....... .+-|-..+.+++.+
T Consensus 117 fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~~-------------------~GPPf~v~~~ev~~ 177 (218)
T PF05724_consen 117 FDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGEM-------------------EGPPFSVTEEEVRE 177 (218)
T ss_dssp EEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSCS-------------------SSSS----HHHHHH
T ss_pred ceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcCC-------------------CCcCCCCCHHHHHH
Confidence 99999988888884 5689999999999999995555443221110 01111246889999
Q ss_pred HHHhCCCcEEEEEe
Q 016921 305 LLQSLSLEDIKAED 318 (380)
Q Consensus 305 ll~~aGf~~v~~~~ 318 (380)
++. .+|+++..+.
T Consensus 178 l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 178 LFG-PGFEIEELEE 190 (218)
T ss_dssp HHT-TTEEEEEEEE
T ss_pred Hhc-CCcEEEEEec
Confidence 998 7999887765
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-11 Score=105.56 Aligned_cols=193 Identities=15% Similarity=0.175 Sum_probs=118.1
Q ss_pred HHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCC-CCCCCCCEEEEECCCcChHH
Q 016921 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE-DPTKRPKNVVDVGCGIGGSS 173 (380)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~~~~~~~~vLDiGcGtG~~~ 173 (380)
.++...+||+......+..+|+--+ ....-.+--+..|..+.... .......++||.|+|.|..+
T Consensus 5 ~y~~a~~YW~~v~atvdGMLGG~~~--------------is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVT 70 (218)
T PF05891_consen 5 WYEKAKEYWENVPATVDGMLGGFGH--------------ISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVT 70 (218)
T ss_dssp HHHHHHHHHHTS-SSHHHHTTT-GG--------------GHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHH
T ss_pred HHHHHHHHHcCCCCCccccccCCCC--------------CChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhH
Confidence 4555667777766666666665221 11111111223333333221 01224679999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHH
Q 016921 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELAR 251 (380)
Q Consensus 174 ~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (380)
..++-..-.+|..+|+.+..++.|++.+... ...-.++++..++++..+.++||+|++.+++.|+.| ..++|+++..
T Consensus 71 k~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~-~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~ 149 (218)
T PF05891_consen 71 KGLLLPVFDEVDLVEPVEKFLEQAKEYLGKD-NPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQ 149 (218)
T ss_dssp HHTCCCC-SEEEEEES-HHHHHHHHHHTCCG-GCCEEEEEES-GGG----TT-EEEEEEES-GGGS-HHHHHHHHHHHHH
T ss_pred HHHHHHhcCEeEEeccCHHHHHHHHHHhccc-CCCcceEEecCHhhccCCCCcEeEEEehHhhccCCHHHHHHHHHHHHH
Confidence 8876555679999999999999999766431 123367888888887544579999999999999976 4689999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
.|+|||.|++-|....... ..++.. ...+ -++.+.+.+++++||++++..+
T Consensus 150 ~L~~~G~IvvKEN~~~~~~---~~~D~~----------DsSv--TRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 150 ALKPNGVIVVKENVSSSGF---DEFDEE----------DSSV--TRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp HEEEEEEEEEEEEEESSSE---EEEETT----------TTEE--EEEHHHHHHHHHHCT-EEEEEE
T ss_pred hCcCCcEEEEEecCCCCCC---cccCCc----------cCee--ecCHHHHHHHHHHcCCEEEEec
Confidence 9999999999885432211 011110 0111 1467899999999999999865
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.4e-11 Score=93.55 Aligned_cols=101 Identities=37% Similarity=0.571 Sum_probs=85.1
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEeccccCC-
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESGEH- 238 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l~~- 238 (380)
+|||+|||.|..+..+++....+++++|+++.++..+++.... ....++.+...|..+... ..++||+|++..++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAA-LLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhc-ccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 4899999999999999883378999999999999988854332 233578999999988653 4678999999999988
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..+...+++.+.+.|+|||.+++.
T Consensus 80 ~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 677889999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.8e-11 Score=106.59 Aligned_cols=139 Identities=22% Similarity=0.319 Sum_probs=107.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
-+..++..+++.+ |.+|||.|.|+|.++..+++.. ..+|+..|..++..+.|+++++..|+..++.+.+.|+.
T Consensus 28 D~~~I~~~l~i~p-----G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 28 DISYILMRLDIRP-----GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp HHHHHHHHTT--T-----T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred hHHHHHHHcCCCC-----CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 4556677777775 9999999999999999999877 47999999999999999999999999889999999997
Q ss_pred CCCCC---CCCccEEEeccccCCCCCHHHHHHHHHHhc-CCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 219 QQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 219 ~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
+..+. +..+|.|+.. +++|-.++..+.++| |+||++++...+. .
T Consensus 103 ~~g~~~~~~~~~DavfLD-----lp~Pw~~i~~~~~~L~~~gG~i~~fsP~i------------------e--------- 150 (247)
T PF08704_consen 103 EEGFDEELESDFDAVFLD-----LPDPWEAIPHAKRALKKPGGRICCFSPCI------------------E--------- 150 (247)
T ss_dssp CG--STT-TTSEEEEEEE-----SSSGGGGHHHHHHHE-EEEEEEEEEESSH------------------H---------
T ss_pred cccccccccCcccEEEEe-----CCCHHHHHHHHHHHHhcCCceEEEECCCH------------------H---------
Confidence 54332 3679999873 578889999999999 8999999876321 0
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
......+.|++.||..+++.+.
T Consensus 151 ---Qv~~~~~~L~~~gf~~i~~~Ev 172 (247)
T PF08704_consen 151 ---QVQKTVEALREHGFTDIETVEV 172 (247)
T ss_dssp ---HHHHHHHHHHHTTEEEEEEEEE
T ss_pred ---HHHHHHHHHHHCCCeeeEEEEE
Confidence 1234456788899998876543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-11 Score=115.47 Aligned_cols=108 Identities=18% Similarity=0.230 Sum_probs=86.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC--CCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF--PDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+...+.+..+|....+. +.++||.|++.
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllDa 317 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLDA 317 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEcC
Confidence 48899999999999999999876 479999999999999999999988875334446777765443 46789999852
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+++.+.++ ..+++.++.++|||||.|+.++.+
T Consensus 318 PcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs 370 (426)
T TIGR00563 318 PCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCS 370 (426)
T ss_pred CCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 34554444 257899999999999999998754
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.9e-10 Score=102.94 Aligned_cols=122 Identities=21% Similarity=0.260 Sum_probs=90.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (380)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.|++++...+ ++++++|+.+. + ...++||+|+++--
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPP 162 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAP 162 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCC
Confidence 4689999999999999999876 5799999999999999999987654 47899998653 2 11357999998631
Q ss_pred c------CCC----------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh
Q 016921 236 G------EHM----------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289 (380)
Q Consensus 236 l------~~~----------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (380)
. ..+ .| ...+++.+.++|+|||++++....
T Consensus 163 y~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~------------------------ 218 (251)
T TIGR03704 163 YVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE------------------------ 218 (251)
T ss_pred CCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc------------------------
Confidence 1 111 01 236777888999999999986410
Q ss_pred ccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 290 AYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 290 ~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
...+++..++++.||....
T Consensus 219 -------~~~~~v~~~l~~~g~~~~~ 237 (251)
T TIGR03704 219 -------RQAPLAVEAFARAGLIARV 237 (251)
T ss_pred -------chHHHHHHHHHHCCCCcee
Confidence 1235677888888987543
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-11 Score=105.34 Aligned_cols=103 Identities=20% Similarity=0.285 Sum_probs=86.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-----CCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-----FPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-----~~~~~fD~V 230 (380)
+.+|||||||+|..+..++... +.+|+++|+++++++.|+++++..++..+++++.+|+.+. + .+.++||+|
T Consensus 69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V 148 (234)
T PLN02781 69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFA 148 (234)
T ss_pred CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE
Confidence 7899999999999999888765 5799999999999999999999999988999999999763 1 124689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++...- +....++..+.+.|+|||.+++...
T Consensus 149 fiDa~k---~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 149 FVDADK---PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred EECCCH---HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 875321 3446789999999999999888653
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=5e-11 Score=108.57 Aligned_cols=106 Identities=11% Similarity=0.247 Sum_probs=84.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++.. +.+++++|+++.+++.|++.+...+..++++++.+|+.+. .-..++||+|++...-
T Consensus 67 ~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~~ 146 (262)
T PRK04457 67 PQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGFD 146 (262)
T ss_pred CCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCCC
Confidence 6799999999999999998877 6899999999999999999876544446899999998653 2223689999975211
Q ss_pred -CCCC---CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 -EHMP---DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 -~~~~---~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+ ....+++++.+.|+|||++++..+
T Consensus 147 ~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~ 178 (262)
T PRK04457 147 GEGIIDALCTQPFFDDCRNALSSDGIFVVNLW 178 (262)
T ss_pred CCCCccccCcHHHHHHHHHhcCCCcEEEEEcC
Confidence 1111 126899999999999999999654
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.9e-11 Score=115.23 Aligned_cols=106 Identities=19% Similarity=0.268 Sum_probs=88.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.+++++...|+. ++.++++|+.+++ ...++||.|+
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEEE
Confidence 48899999999999999999875 368999999999999999999988874 6999999998765 3457899999
Q ss_pred ec------cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SM------ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~------~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+. +++.+-++ ..+++.++.++|||||+|+.++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystc 385 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATC 385 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 63 34444333 24789999999999999998764
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=104.87 Aligned_cols=123 Identities=23% Similarity=0.342 Sum_probs=94.0
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc--ccC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--SGE 237 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--~l~ 237 (380)
+|||+|||+|..+..++.+. .+.|+|+|+|+..++.|++++...++ .++.+++.|+.+. . .++||+|+++= .-.
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~-~-~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEP-L-RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccc-c-CCceeEEEeCCCCCCC
Confidence 79999999999999999987 56999999999999999999999988 6777777776553 2 24899999841 111
Q ss_pred ---CC-C-----C--------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 238 ---HM-P-----D--------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 238 ---~~-~-----~--------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
+. + + ...++.++.+.|+|||.+++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g------------------------------ 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG------------------------------ 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC------------------------------
Confidence 11 0 1 13578889999999998888541
Q ss_pred CCCCHHHHHHHHHhCC-CcEEEEE
Q 016921 295 AWCSTADYVKLLQSLS-LEDIKAE 317 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aG-f~~v~~~ 317 (380)
+...+.+.+++++.| |..+...
T Consensus 240 -~~q~~~v~~~~~~~~~~~~v~~~ 262 (280)
T COG2890 240 -LTQGEAVKALFEDTGFFEIVETL 262 (280)
T ss_pred -CCcHHHHHHHHHhcCCceEEEEE
Confidence 123578889999999 6655443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.8e-11 Score=111.58 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=78.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC---------CCCCeEEEEcCCCCC----CCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG---------LADKVSFQVGDALQQ----PFPD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~---------~~~~v~~~~~d~~~~----~~~~ 224 (380)
++.+|||+|||-|+.+.-+....-..++|+|++...++.|+++..... ..-...|+.+|.... .+++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 589999999998887766666445799999999999999999993311 112467888887653 1233
Q ss_pred --CCccEEEeccccCCC-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 016921 225 --GQFDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 --~~fD~V~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..||+|.|.+++|+. .+ ...+++++...|+|||+++.+.+
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~ 187 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTP 187 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEec
Confidence 599999999999998 22 35699999999999999999875
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=102.78 Aligned_cols=95 Identities=21% Similarity=0.347 Sum_probs=76.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
...++||||+|.|..+..++..+ .+|++.+.|+.|....+ ++| .+++ |..+..-.+.+||+|.|.++|.
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f-~~v~aTE~S~~Mr~rL~----~kg----~~vl--~~~~w~~~~~~fDvIscLNvLD 162 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLF-KEVYATEASPPMRWRLS----KKG----FTVL--DIDDWQQTDFKFDVISCLNVLD 162 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhc-ceEEeecCCHHHHHHHH----hCC----CeEE--ehhhhhccCCceEEEeehhhhh
Confidence 46789999999999999999874 67999999999965444 344 3333 3333332356899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+|..+++.+++.|+|+|+++++.
T Consensus 163 Rc~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 163 RCDRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ccCCHHHHHHHHHHHhCCCCEEEEEE
Confidence 99999999999999999999999875
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.24 E-value=9e-11 Score=100.12 Aligned_cols=127 Identities=17% Similarity=0.259 Sum_probs=84.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
-++.+++.+.-. ++...|-|+|||.+.++..+.+ +..|.-.|+-. .+-.+..+|+.+.
T Consensus 59 Pvd~iI~~l~~~----~~~~viaD~GCGdA~la~~~~~--~~~V~SfDLva----------------~n~~Vtacdia~v 116 (219)
T PF05148_consen 59 PVDVIIEWLKKR----PKSLVIADFGCGDAKLAKAVPN--KHKVHSFDLVA----------------PNPRVTACDIANV 116 (219)
T ss_dssp HHHHHHHHHCTS-----TTS-EEEES-TT-HHHHH--S-----EEEEESS-----------------SSTTEEES-TTS-
T ss_pred cHHHHHHHHHhc----CCCEEEEECCCchHHHHHhccc--CceEEEeeccC----------------CCCCEEEecCccC
Confidence 456666666432 2467999999999998866543 45799999965 2334688999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
|+++++.|+++++.+|-. .++..+++|+.|+|||||.|.|.|... ++.+.+
T Consensus 117 PL~~~svDv~VfcLSLMG-Tn~~~fi~EA~RvLK~~G~L~IAEV~S----------------------------Rf~~~~ 167 (219)
T PF05148_consen 117 PLEDESVDVAVFCLSLMG-TNWPDFIREANRVLKPGGILKIAEVKS----------------------------RFENVK 167 (219)
T ss_dssp S--TT-EEEEEEES---S-S-HHHHHHHHHHHEEEEEEEEEEEEGG----------------------------G-S-HH
T ss_pred cCCCCceeEEEEEhhhhC-CCcHHHHHHHHheeccCcEEEEEEecc----------------------------cCcCHH
Confidence 999999999998877755 589999999999999999999998531 123567
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 016921 301 DYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~ 318 (380)
.+.+.++..||+.+....
T Consensus 168 ~F~~~~~~~GF~~~~~d~ 185 (219)
T PF05148_consen 168 QFIKALKKLGFKLKSKDE 185 (219)
T ss_dssp HHHHHHHCTTEEEEEEE-
T ss_pred HHHHHHHHCCCeEEeccc
Confidence 888999999999887543
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2e-10 Score=103.80 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||.|.++..+++.. ..+++.+|+|...++.+++++..+++. +..+...|..+ +.++ +||+|+++=-+|
T Consensus 159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~-~~~v~~s~~~~-~v~~-kfd~IisNPPfh 235 (300)
T COG2813 159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVE-NTEVWASNLYE-PVEG-KFDLIISNPPFH 235 (300)
T ss_pred CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCC-ccEEEEecccc-cccc-cccEEEeCCCcc
Confidence 5699999999999999999987 689999999999999999999988774 33666666655 3333 999999987776
Q ss_pred CCCCH-----HHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDK-----SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~-----~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-=.+. .++++.+.+.|++||.|.++-.
T Consensus 236 ~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 236 AGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred CCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 44322 4799999999999999999863
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.6e-10 Score=100.24 Aligned_cols=94 Identities=21% Similarity=0.360 Sum_probs=72.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+|||+|||+|.++..+++.. ..+|+++|+++.+ .. .++.++++|+.+.+ ++.++|
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~-~~i~~~~~d~~~~~~~~~l~~~~~~~~~ 99 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PI-ENVDFIRGDFTDEEVLNKIRERVGDDKV 99 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cC-CCceEEEeeCCChhHHHHHHHHhCCCCc
Confidence 48899999999999999998876 3589999999864 11 36888999987642 356789
Q ss_pred cEEEeccccC--------CC---CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGE--------HM---PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~--------~~---~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|++....+ |. .+...+++++.++|+|||++++..
T Consensus 100 D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~ 146 (188)
T TIGR00438 100 DVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKV 146 (188)
T ss_pred cEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEE
Confidence 9999864321 11 113678999999999999999864
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.5e-10 Score=111.48 Aligned_cols=105 Identities=21% Similarity=0.302 Sum_probs=84.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+ ++.++++|+.+++ ++.++||.|++.-
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEECC
Confidence 48999999999999999999876 46999999999999999999988876 3789999998753 3457899999522
Q ss_pred ------ccCCCC------C----------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 ------SGEHMP------D----------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ------~l~~~~------~----------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++.+-+ . ..+++..+.++|||||++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystc 373 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATC 373 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 111111 1 13689999999999999998874
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=112.63 Aligned_cols=106 Identities=19% Similarity=0.315 Sum_probs=85.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...|+. ++.++++|+..++ ++++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~-~~~~fD~Vl~D~P 327 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFS-PEEQPDAILLDAP 327 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccc-cCCCCCEEEEcCC
Confidence 48899999999999999988865 468999999999999999999988874 7999999998865 45789999962
Q ss_pred -cccCCC---C------C----------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 -ESGEHM---P------D----------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 -~~l~~~---~------~----------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
....++ + + ...++.++.+.|||||+++..+.+
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs 379 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCS 379 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 111111 1 1 135899999999999999998743
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.22 E-value=2e-10 Score=97.93 Aligned_cols=109 Identities=22% Similarity=0.287 Sum_probs=82.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
+.+++.+.+.. +.+|||||||+|.++..++++ +.+|+++|+++.+++.+++++.. .++++++.+|+.++++
T Consensus 3 ~~i~~~~~~~~-----~~~vLEiG~G~G~lt~~l~~~-~~~v~~vE~~~~~~~~~~~~~~~---~~~v~ii~~D~~~~~~ 73 (169)
T smart00650 3 DKIVRAANLRP-----GDTVLEIGPGKGALTEELLER-AARVTAIEIDPRLAPRLREKFAA---ADNLTVIHGDALKFDL 73 (169)
T ss_pred HHHHHhcCCCC-----cCEEEEECCCccHHHHHHHhc-CCeEEEEECCHHHHHHHHHHhcc---CCCEEEEECchhcCCc
Confidence 44555555543 789999999999999999987 78999999999999999988743 2479999999999887
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHh--cCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARV--TAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~--LkpgG~l~~~~ 263 (380)
++.+||.|+++-- +|+. ...+..+.+. +.++|.+++..
T Consensus 74 ~~~~~d~vi~n~P-y~~~--~~~i~~~l~~~~~~~~~~l~~q~ 113 (169)
T smart00650 74 PKLQPYKVVGNLP-YNIS--TPILFKLLEEPPAFRDAVLMVQK 113 (169)
T ss_pred cccCCCEEEECCC-cccH--HHHHHHHHhcCCCcceEEEEEEH
Confidence 7777999987643 3432 3444444433 34677776653
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-10 Score=105.30 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.++++++..++ .++.++..|+..++...++||.|++.
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~-~~v~~~~~D~~~~~~~~~~fD~Vl~D~P 149 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGV-LNVAVTNFDGRVFGAAVPKFDAILLDAP 149 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEecCCHHHhhhhccCCCEEEEcCC
Confidence 48899999999999999998876 35899999999999999999998887 46999999988765445679999863
Q ss_pred ----cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++.+-++ ..++++.+.+.|||||+|+.++.
T Consensus 150 csg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstc 200 (264)
T TIGR00446 150 CSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTC 200 (264)
T ss_pred CCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 12221111 13588999999999999998763
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-10 Score=111.79 Aligned_cols=107 Identities=19% Similarity=0.254 Sum_probs=87.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.+.++|+..++ +.+++||.|++.
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~Da 315 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILVDA 315 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEECC
Confidence 48899999999999999999876 579999999999999999999988874 6899999998765 446789999962
Q ss_pred --cccCCC---CC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 --ESGEHM---PD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 --~~l~~~---~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
..+..+ ++ ..+++.++.+.|||||.++.++.+
T Consensus 316 PCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 368 (431)
T PRK14903 316 PCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCT 368 (431)
T ss_pred CCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence 122222 21 145788999999999999998753
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2e-10 Score=118.62 Aligned_cols=133 Identities=18% Similarity=0.122 Sum_probs=99.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-CCCCCccEEEecc--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-FPDGQFDLVWSME-- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-~~~~~fD~V~~~~-- 234 (380)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+.. -..++||+|++.-
T Consensus 539 g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP~ 618 (702)
T PRK11783 539 GKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPPT 618 (702)
T ss_pred CCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCCC
Confidence 7899999999999999999862347999999999999999999988885 58999999986631 1146899999842
Q ss_pred ---------ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 016921 235 ---------SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (380)
Q Consensus 235 ---------~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (380)
......+...++..+.++|+|||.+++..... . .+ ...+.
T Consensus 619 f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~-~----------------------------~~--~~~~~ 667 (702)
T PRK11783 619 FSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR-G----------------------------FK--MDEEG 667 (702)
T ss_pred CCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc-c----------------------------CC--hhHHH
Confidence 11112344678889999999999988864210 0 11 11577
Q ss_pred HHhCCCcEEEEEecCCC
Q 016921 306 LQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~~ 322 (380)
++++|+....++..+.+
T Consensus 668 ~~~~g~~~~~i~~~~~~ 684 (702)
T PRK11783 668 LAKLGLKAEEITAKTLP 684 (702)
T ss_pred HHhCCCeEEEEecCCCC
Confidence 88899998877755543
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=98.69 Aligned_cols=150 Identities=18% Similarity=0.133 Sum_probs=113.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
...++|||||.|.....+..+.-.+++-+|.|..|++.++..- ...-.+...++|-+.++|.++++|+|++...+|+
T Consensus 73 fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q---dp~i~~~~~v~DEE~Ldf~ens~DLiisSlslHW 149 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ---DPSIETSYFVGDEEFLDFKENSVDLIISSLSLHW 149 (325)
T ss_pred CcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC---CCceEEEEEecchhcccccccchhhhhhhhhhhh
Confidence 5579999999999999988775568999999999998876532 1112467888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC----CCCCCHHHHHHHHHhCCCcEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL----PAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ll~~aGf~~v 314 (380)
+.|....+.++...|||+|.++-+.++.+......-. -.+.......++ .++....++..+|..|||..+
T Consensus 150 ~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~s------lqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~ 223 (325)
T KOG2940|consen 150 TNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCS------LQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSML 223 (325)
T ss_pred hccCchHHHHHHHhcCCCccchhHHhccccHHHHHHH------hhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccc
Confidence 9999999999999999999998877655443322211 112222222222 234456788899999999977
Q ss_pred EEE
Q 016921 315 KAE 317 (380)
Q Consensus 315 ~~~ 317 (380)
.+.
T Consensus 224 tvD 226 (325)
T KOG2940|consen 224 TVD 226 (325)
T ss_pred eec
Confidence 654
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-10 Score=107.25 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C--CCCeEEEEcCCCCC-CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L--ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~--~~~v~~~~~d~~~~-~~~~~~fD~V~~ 232 (380)
+.+||+||||+|..+..+++.. ..+|+++|+++.+++.|++.+.... . .++++++.+|+... ....++||+|++
T Consensus 77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~ 156 (283)
T PRK00811 77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVIIV 156 (283)
T ss_pred CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEEE
Confidence 7899999999999999998864 4689999999999999999876432 1 46899999998764 224578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-.+.+. ..++++.+.+.|+|||.+++.
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 157 DSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred CCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 643332222 267889999999999998875
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-10 Score=99.94 Aligned_cols=119 Identities=26% Similarity=0.407 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
...-+++..+++... +.+||||||++|..+..+++.. +.+|+.+|+++...+.|++.+...|+.++|+++
T Consensus 31 ~~~g~lL~~l~~~~~--------~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~ 102 (205)
T PF01596_consen 31 PETGQLLQMLVRLTR--------PKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVI 102 (205)
T ss_dssp HHHHHHHHHHHHHHT---------SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEE
T ss_pred HHHHHHHHHHHHhcC--------CceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEE
Confidence 344456666665543 7789999999999999999876 689999999999999999999999998899999
Q ss_pred EcCCCCC-C-----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 214 VGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 214 ~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+|+.+. + .+.++||+|+....= .+....+..+.+.|+|||.+++-...
T Consensus 103 ~gda~~~l~~l~~~~~~~~fD~VFiDa~K---~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 103 EGDALEVLPELANDGEEGQFDFVFIDADK---RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp ES-HHHHHHHHHHTTTTTSEEEEEEESTG---GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred EeccHhhHHHHHhccCCCceeEEEEcccc---cchhhHHHHHhhhccCCeEEEEcccc
Confidence 9998763 1 123689999986532 35678899999999999999997643
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-10 Score=110.73 Aligned_cols=104 Identities=18% Similarity=0.257 Sum_probs=84.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~ 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.++++++..|+. ++.++++|+.++. ++ ++||+|++.
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~-~~fD~Vl~D 327 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFA-EKFDKILVD 327 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhc-ccCCEEEEc
Confidence 47899999999999999999875 579999999999999999999988885 5999999998753 33 789999974
Q ss_pred c------ccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 E------SGEHMPD----------------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~------~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ++.+-++ ...+++.+.++|||||.|+.++
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYST 379 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEc
Confidence 2 1121111 1357999999999999999765
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-10 Score=108.87 Aligned_cols=118 Identities=23% Similarity=0.373 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
+.....+++.++..+.+.+ +.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ .+++|++
T Consensus 279 ~~~~e~l~~~vl~~l~~~~-----~~~VLDlgcGtG~~sl~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~ 351 (443)
T PRK13168 279 AQVNQKMVARALEWLDPQP-----GDRVLDLFCGLGNFTLPLARQ-AAEVVGVEGVEAMVERARENARRNGL-DNVTFYH 351 (443)
T ss_pred HHHHHHHHHHHHHHhcCCC-----CCEEEEEeccCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 3444567777777765443 789999999999999999987 68999999999999999999988877 4799999
Q ss_pred cCCCCC----CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. ++.+++||+|++.---. .....+..+.+ ++|++.++++.
T Consensus 352 ~d~~~~l~~~~~~~~~fD~Vi~dPPr~---g~~~~~~~l~~-~~~~~ivyvSC 400 (443)
T PRK13168 352 ANLEEDFTDQPWALGGFDKVLLDPPRA---GAAEVMQALAK-LGPKRIVYVSC 400 (443)
T ss_pred eChHHhhhhhhhhcCCCCEEEECcCCc---ChHHHHHHHHh-cCCCeEEEEEe
Confidence 998653 24456899998742111 12355655555 68999888875
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.7e-10 Score=104.06 Aligned_cols=105 Identities=18% Similarity=0.212 Sum_probs=79.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHH--HH---HcCC-CCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANAL--AA---ARGL-ADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~--~~---~~~~-~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
+.+||+||||+|..+..+++.. ..+|+++|+++++++.|++. +. ...+ .++++++.+|+.+. ....++||+|
T Consensus 151 PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDVI 230 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDVI 230 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccEE
Confidence 6799999999999998888764 47999999999999999962 11 1111 36899999998873 3335789999
Q ss_pred EeccccC---CCC--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGE---HMP--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~---~~~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++...-. ... -..++++.+++.|+|||.+++..
T Consensus 231 IvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 231 IIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred EEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 9863211 011 12568999999999999988863
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=95.63 Aligned_cols=120 Identities=23% Similarity=0.391 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV- 214 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~- 214 (380)
+-.++..+++.. .+.+|||||++.|..++.|+... ..+++.+|+++++.+.|++++++.|+.+++.++.
T Consensus 47 ~g~~L~~L~~~~--------~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~ 118 (219)
T COG4122 47 TGALLRLLARLS--------GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLG 118 (219)
T ss_pred HHHHHHHHHHhc--------CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEec
Confidence 344555555543 27899999999999999999987 4789999999999999999999999988899888
Q ss_pred cCCCCC-C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 215 GDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 215 ~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
+|+.+. . ...++||+|+.-..= .+...+++.+.++|+|||.+++-......
T Consensus 119 gdal~~l~~~~~~~fDliFIDadK---~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 119 GDALDVLSRLLDGSFDLVFIDADK---ADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred CcHHHHHHhccCCCccEEEEeCCh---hhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 576553 2 346899999975422 23478999999999999999997765444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.1e-09 Score=99.42 Aligned_cols=104 Identities=15% Similarity=0.168 Sum_probs=87.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C----CCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F----PDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~----~~~~fD~V 230 (380)
+.+|||||+|+|..+..++... +.+|+.+|.+++..+.|++.+++.|+.++++++.+|+.+. + + ..++||+|
T Consensus 119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V 198 (278)
T PLN02476 119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA 198 (278)
T ss_pred CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE
Confidence 7899999999999999999865 5689999999999999999999999988999999998663 2 1 13689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+.... -.+...+++.+.+.|+|||.+++-...
T Consensus 199 FIDa~---K~~Y~~y~e~~l~lL~~GGvIV~DNvL 230 (278)
T PLN02476 199 FVDAD---KRMYQDYFELLLQLVRVGGVIVMDNVL 230 (278)
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEecCc
Confidence 98642 134578899999999999998886543
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.5e-10 Score=97.57 Aligned_cols=103 Identities=30% Similarity=0.462 Sum_probs=82.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCCccEEEeccc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSMES 235 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~V~~~~~ 235 (380)
..+||||||.|.++..+|... +..++|+|+....+..+.+++...++ .|+.++++|+..+ . ++++++|.|+..+-
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 389999999999999999988 88999999999999999999988887 6999999999883 1 45789999998654
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
=-|.... ..++..++++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 3333211 579999999999999999976
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.6e-10 Score=99.17 Aligned_cols=107 Identities=22% Similarity=0.255 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCCC------CCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDALQ------QPFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~~------~~~~~~~ 226 (380)
++..++|+|||-|+-++..-+..-..++|+||+...++.|+++........ .+.|+.+|... +++++.+
T Consensus 117 ~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~ 196 (389)
T KOG1975|consen 117 RGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR 196 (389)
T ss_pred cccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence 378899999999988887766544589999999999999999886532111 36889998765 2344556
Q ss_pred ccEEEeccccCCC-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
||+|-|.+++|+. .+ ...+++++.+.|||||+++-+.+
T Consensus 197 fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 197 FDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred cceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 9999999999876 22 35689999999999999988763
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=106.96 Aligned_cols=105 Identities=13% Similarity=0.091 Sum_probs=82.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--C--CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--F--PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~--~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+.- + ..++||+|++.
T Consensus 221 g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilD 300 (396)
T PRK15128 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_pred CCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEEC
Confidence 7899999999999998766542348999999999999999999998885 47999999987641 1 24689999986
Q ss_pred cccCCC---------CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM---------PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~---------~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
--...- .+...++..+.++|+|||.|+++.
T Consensus 301 PP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s 339 (396)
T PRK15128 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS 339 (396)
T ss_pred CCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 221110 123456667899999999999865
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=101.01 Aligned_cols=104 Identities=23% Similarity=0.391 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~V~~ 232 (380)
+.+||+||||.|..+..+++.. ..+|+.+|+++.+++.+++.+... ++ .++++++.+|+... ..++++||+|++
T Consensus 92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvIi~ 171 (308)
T PLN02366 92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAIIV 171 (308)
T ss_pred CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEEEE
Confidence 7899999999999999998864 368999999999999999987653 22 35899999997553 123578999998
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-.+.+. ...+++.+.+.|+|||.++..
T Consensus 172 D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~q 205 (308)
T PLN02366 172 DSSDPVGPAQELFEKPFFESVARALRPGGVVCTQ 205 (308)
T ss_pred cCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEC
Confidence 543332221 247899999999999998764
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.6e-09 Score=111.68 Aligned_cols=104 Identities=26% Similarity=0.288 Sum_probs=79.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---------------CCCeEEEEcCCCCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---------------ADKVSFQVGDALQQPF 222 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---------------~~~v~~~~~d~~~~~~ 222 (380)
+.+|||+|||+|..++.+++.. ..+|+|+|+|+.+++.|++++..+++ ..+++|+++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 5689999999999999999987 57999999999999999999987543 2479999999876431
Q ss_pred C-CCCccEEEecc--c------------cCC------------C--------CC----HHHHHHHHHHhcCCCcEEEEE
Q 016921 223 P-DGQFDLVWSME--S------------GEH------------M--------PD----KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 ~-~~~fD~V~~~~--~------------l~~------------~--------~~----~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. ..+||+|+++= . ..| . .| ..+++.++.++|+|||.+++-
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 1 13699999841 1 000 0 11 146778888999999988874
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.3e-09 Score=95.00 Aligned_cols=125 Identities=17% Similarity=0.225 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
-++.+++.+...+ ....|-|+|||-+.++. .....|+.+|+-+ .+-.++.+|+.+.
T Consensus 167 Pld~ii~~ik~r~----~~~vIaD~GCGEakiA~----~~~~kV~SfDL~a----------------~~~~V~~cDm~~v 222 (325)
T KOG3045|consen 167 PLDVIIRKIKRRP----KNIVIADFGCGEAKIAS----SERHKVHSFDLVA----------------VNERVIACDMRNV 222 (325)
T ss_pred hHHHHHHHHHhCc----CceEEEecccchhhhhh----ccccceeeeeeec----------------CCCceeeccccCC
Confidence 3455555554332 46789999999987775 2245799999854 3456789999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
|+++++.|+++++.+|.. .|...++.++.|+|++||.+.|.+... ++.+..
T Consensus 223 Pl~d~svDvaV~CLSLMg-tn~~df~kEa~RiLk~gG~l~IAEv~S----------------------------Rf~dv~ 273 (325)
T KOG3045|consen 223 PLEDESVDVAVFCLSLMG-TNLADFIKEANRILKPGGLLYIAEVKS----------------------------RFSDVK 273 (325)
T ss_pred cCccCcccEEEeeHhhhc-ccHHHHHHHHHHHhccCceEEEEehhh----------------------------hcccHH
Confidence 999999999998776643 588999999999999999999998421 133556
Q ss_pred HHHHHHHhCCCcEEEEEe
Q 016921 301 DYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~ 318 (380)
.+...|...||.+.....
T Consensus 274 ~f~r~l~~lGF~~~~~d~ 291 (325)
T KOG3045|consen 274 GFVRALTKLGFDVKHKDV 291 (325)
T ss_pred HHHHHHHHcCCeeeehhh
Confidence 788899999999776543
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-09 Score=109.29 Aligned_cols=106 Identities=24% Similarity=0.293 Sum_probs=81.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH--HHHc---CC-CCCeEEEEcCCCCC-CCCCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL--AAAR---GL-ADKVSFQVGDALQQ-PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~--~~~~---~~-~~~v~~~~~d~~~~-~~~~~~fD~ 229 (380)
++.+|||||||+|..+..++++.. .+|+++|+++++++.++++ +... .. .++++++.+|+.+. ...+++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 378999999999999999987543 7999999999999999983 2221 11 25899999998773 223478999
Q ss_pred EEeccccCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|++...-...+. ..++++.+.+.|||||.+++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 998754332221 1468999999999999998864
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.1e-10 Score=98.35 Aligned_cols=190 Identities=19% Similarity=0.268 Sum_probs=109.6
Q ss_pred hhhHHHhhcccccccc----------cCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCC--cChHHH
Q 016921 107 SSLWEDIWGDHMHHGF----------YEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCG--IGGSSR 174 (380)
Q Consensus 107 ~~~y~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcG--tG~~~~ 174 (380)
+++|+.++|++.|+.. ..+.........|..+.+.++.+....++. ..|||||| |-....
T Consensus 15 ARvYDy~LGGkdnf~vDR~~a~~~~~~~P~~~~~ar~nR~Fl~RaVr~la~~~GIr--------QFLDlGsGlPT~~nvH 86 (267)
T PF04672_consen 15 ARVYDYLLGGKDNFAVDREAAERLLAAAPEIREAARANRAFLRRAVRYLAEEAGIR--------QFLDLGSGLPTAGNVH 86 (267)
T ss_dssp HHHHHHHCT-SS--HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHCTT-----------EEEEET--S--SS-HH
T ss_pred HHHHHHHhCCccCCHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcc--------eEEEcccCCCCCCCHh
Confidence 5666666776666431 112212223345666666666666655554 49999999 666788
Q ss_pred HHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC----CCCcc-----EEEeccccCCCC-
Q 016921 175 YLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP----DGQFD-----LVWSMESGEHMP- 240 (380)
Q Consensus 175 ~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~----~~~fD-----~V~~~~~l~~~~- 240 (380)
.++++. .++|+.+|++|..+..++..+..... .+..++++|+.+.. +. .+-+| .|++..++||++
T Consensus 87 evAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D 165 (267)
T PF04672_consen 87 EVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPD 165 (267)
T ss_dssp HHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-C
T ss_pred HHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCC
Confidence 888876 78999999999999999998865421 24899999998741 00 12233 477788999995
Q ss_pred --CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-CCCCHHHHHHHHHhCCCcEEE
Q 016921 241 --DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-AWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 241 --~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ll~~aGf~~v~ 315 (380)
++..+++.+...|.||.+|+++....... + .....+...+.....+ .+.+.+++..+|. ||+.++
T Consensus 166 ~~dp~~iv~~l~d~lapGS~L~ish~t~d~~-p-------~~~~~~~~~~~~~~~~~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 166 DDDPAGIVARLRDALAPGSYLAISHATDDGA-P-------ERAEALEAVYAQAGSPGRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp GCTHHHHHHHHHCCS-TT-EEEEEEEB-TTS-H-------HHHHHHHHHHHHCCS----B-HHHHHHCCT--TSEE-T
T ss_pred ccCHHHHHHHHHHhCCCCceEEEEecCCCCC-H-------HHHHHHHHHHHcCCCCceecCHHHHHHHcC--CCccCC
Confidence 47899999999999999999998754321 1 1112222222222222 3578999999998 998763
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-09 Score=100.57 Aligned_cols=118 Identities=24% Similarity=0.247 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
.....+++.+.+.+... ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.|+++++..++ .+++|+++
T Consensus 156 ~~~~~l~~~v~~~l~~~-----~~~~VLDl~cG~G~~sl~la~~-~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~ 228 (315)
T PRK03522 156 AVAAQLYATARDWVREL-----PPRSMWDLFCGVGGFGLHCATP-GMQLTGIEISAEAIACAKQSAAELGL-TNVQFQAL 228 (315)
T ss_pred HHHHHHHHHHHHHHHhc-----CCCEEEEccCCCCHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEc
Confidence 33344555544444322 2689999999999999999986 78999999999999999999998888 58999999
Q ss_pred CCCCCCC-CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+.++.. ..+.||+|++.---. .....+.++...++|++.++++.
T Consensus 229 D~~~~~~~~~~~~D~Vv~dPPr~---G~~~~~~~~l~~~~~~~ivyvsc 274 (315)
T PRK03522 229 DSTQFATAQGEVPDLVLVNPPRR---GIGKELCDYLSQMAPRFILYSSC 274 (315)
T ss_pred CHHHHHHhcCCCCeEEEECCCCC---CccHHHHHHHHHcCCCeEEEEEC
Confidence 9987532 235799999862210 11222333344467888777765
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.1e-09 Score=102.66 Aligned_cols=119 Identities=18% Similarity=0.296 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.++..+.+.. +.+|||+|||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.
T Consensus 274 ~~~~~~l~~~~~~~l~~~~-----~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~ 346 (431)
T TIGR00479 274 SGQNEKLVDRALEALELQG-----EELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLA 346 (431)
T ss_pred HHHHHHHHHHHHHHhccCC-----CCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEe
Confidence 4445556666666665443 689999999999999999987 67999999999999999999988887 5899999
Q ss_pred cCCCCC----CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. ++.+++||+|++.--= ..-...+++.+.+ ++|++.++++.
T Consensus 347 ~d~~~~l~~~~~~~~~~D~vi~dPPr--~G~~~~~l~~l~~-l~~~~ivyvsc 396 (431)
T TIGR00479 347 GTLETVLPKQPWAGQIPDVLLLDPPR--KGCAAEVLRTIIE-LKPERIVYVSC 396 (431)
T ss_pred CCHHHHHHHHHhcCCCCCEEEECcCC--CCCCHHHHHHHHh-cCCCEEEEEcC
Confidence 998753 2335679999863221 1112456665554 88988777753
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.1e-08 Score=93.14 Aligned_cols=176 Identities=15% Similarity=0.190 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-GLADKVSF 212 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~~ 212 (380)
|......+..++........+..++.+|||||||+|.....++.+. +.+++|+|+++.+++.|++++... ++..++.+
T Consensus 91 R~~Yi~~l~dll~~~~~~~~p~~~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~ 170 (321)
T PRK11727 91 RADYIHHLADLLAEDNGGVIPRGANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRL 170 (321)
T ss_pred HHHHHHHHHHHhcccccccCCCCCCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEE
Confidence 4444445555554321111222347899999999998888877665 789999999999999999999998 78888888
Q ss_pred EE-cCCCCCC----CCCCCccEEEeccccCCCCCH-----HHHHHHH----------------HHhcCCCcEEEEEeccC
Q 016921 213 QV-GDALQQP----FPDGQFDLVWSMESGEHMPDK-----SKFVSEL----------------ARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 213 ~~-~d~~~~~----~~~~~fD~V~~~~~l~~~~~~-----~~~l~~~----------------~r~LkpgG~l~~~~~~~ 266 (380)
.. .|...+. .+++.||+|+|+=-++.-.+. ..-.+.+ .+++.+||.+.+...
T Consensus 171 ~~~~~~~~i~~~i~~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~-- 248 (321)
T PRK11727 171 RLQKDSKAIFKGIIHKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR-- 248 (321)
T ss_pred EEccchhhhhhcccccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH--
Confidence 64 3333321 246789999997543322111 1122222 233445565444331
Q ss_pred CCCCCCccccchHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 267 RDLAPSEESLQPWEQELLKKICD-AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
+............- ...+..--+.+.+.+.|++.|...+.+.++..
T Consensus 249 ---------mi~eS~~~~~~~gwftsmv~kk~~l~~l~~~L~~~~~~~~~~~e~~q 295 (321)
T PRK11727 249 ---------MIEESKAFAKQVLWFTSLVSKKENLPPLYRALKKVGAVEVKTIEMAQ 295 (321)
T ss_pred ---------hhHHHHHHHhhCcEEEEEeeccCCHHHHHHHHHHcCCceEEEEEEeC
Confidence 11111111111100 00111234789999999999998777776644
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=97.95 Aligned_cols=104 Identities=18% Similarity=0.279 Sum_probs=80.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||+||||+|..+..+++.. ..+++++|+++.+++.+++.+...+ . .++++++.+|+... ....++||+|++.
T Consensus 73 p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~D 152 (270)
T TIGR00417 73 PKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIVD 152 (270)
T ss_pred CCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEEe
Confidence 5699999999999999888765 4689999999999999999875432 1 24788888887552 2224789999986
Q ss_pred cccCCCC--C--HHHHHHHHHHhcCCCcEEEEE
Q 016921 234 ESGEHMP--D--KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~~--~--~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.....-+ + ..++++.+.+.|+|||.+++.
T Consensus 153 ~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 153 STDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred CCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 5422211 1 357889999999999999986
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.6e-09 Score=95.73 Aligned_cols=116 Identities=18% Similarity=0.250 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
..+++..+++... ..+|||||+++|..++.++... +.+|+.+|.+++..+.|++.+...|+.++|+++.+
T Consensus 67 ~g~lL~~l~~~~~--------ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G 138 (247)
T PLN02589 67 EGQFLNMLLKLIN--------AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREG 138 (247)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEec
Confidence 3445555555443 6789999999999999999865 57999999999999999999999999999999999
Q ss_pred CCCCC-C-C-----CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 216 DALQQ-P-F-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 216 d~~~~-~-~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.+. + + ..++||+|++-.- -......++.+.+.|+|||.|++-..
T Consensus 139 ~a~e~L~~l~~~~~~~~~fD~iFiDad---K~~Y~~y~~~~l~ll~~GGviv~DNv 191 (247)
T PLN02589 139 PALPVLDQMIEDGKYHGTFDFIFVDAD---KDNYINYHKRLIDLVKVGGVIGYDNT 191 (247)
T ss_pred cHHHHHHHHHhccccCCcccEEEecCC---HHHhHHHHHHHHHhcCCCeEEEEcCC
Confidence 98763 2 1 1368999998643 12346788888999999999888543
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=4.6e-09 Score=90.94 Aligned_cols=146 Identities=24% Similarity=0.449 Sum_probs=95.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc-----C--------------------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR-----G-------------------------- 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~-----~-------------------------- 205 (380)
.+..+|||||..|.++..+++.++ ..|.|+||++..++.|++.+..- .
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~ 137 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAF 137 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccc
Confidence 377899999999999999999984 57999999999999999876321 0
Q ss_pred ---CCCCeEEE-------EcCCCCCCCCCCCccEEEeccccCCC----CC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 016921 206 ---LADKVSFQ-------VGDALQQPFPDGQFDLVWSMESGEHM----PD--KSKFVSELARVTAPAGTIIIVTWCHRDL 269 (380)
Q Consensus 206 ---~~~~v~~~-------~~d~~~~~~~~~~fD~V~~~~~l~~~----~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~ 269 (380)
++.++.|. ..|+. .+....||+|+|..+--++ .| ...+++++.++|.|||+|++--
T Consensus 138 t~~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLvvEP------ 209 (288)
T KOG2899|consen 138 TTDFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILVVEP------ 209 (288)
T ss_pred cccCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEEEcC------
Confidence 01111111 11111 2335689999987665444 22 4689999999999999999843
Q ss_pred CCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC--CCcEE
Q 016921 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL--SLEDI 314 (380)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a--Gf~~v 314 (380)
.....+.... .....+...+ ..-+..++.+..+|.+. ||+-+
T Consensus 210 -QpWksY~kaa-r~~e~~~~ny-~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 210 -QPWKSYKKAA-RRSEKLAANY-FKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred -CchHHHHHHH-HHHHHhhcCc-cceecCHHHHHhhhhhhhhheeee
Confidence 1112222211 1222222222 23356789999998876 55543
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-07 Score=85.36 Aligned_cols=165 Identities=20% Similarity=0.225 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH---cC--------
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA---RG-------- 205 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~---~~-------- 205 (380)
....+++.+-...+.. .....+.+||--|||.|.++..+|.. |..+.|.|.|--|+-..+-.+.. .+
T Consensus 36 ~~~~I~~~L~~~~p~~-~~~~~~~~VLVPGsGLGRLa~Eia~~-G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~ 113 (270)
T PF07942_consen 36 CYSPILDELESLFPPA-GSDRSKIRVLVPGSGLGRLAWEIAKL-GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFV 113 (270)
T ss_pred HHHHHHHHHHHhhccc-ccCCCccEEEEcCCCcchHHHHHhhc-cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecce
Confidence 3344555544444321 11234689999999999999999998 89999999999997554443321 00
Q ss_pred ----------------------------CCCCeEEEEcCCCCCCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcC
Q 016921 206 ----------------------------LADKVSFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTA 254 (380)
Q Consensus 206 ----------------------------~~~~v~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk 254 (380)
.+.++....+|+.+.-.++ ++||.|+..+.+.-.++.-..++.+.++||
T Consensus 114 ~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~Ni~~Yi~tI~~lLk 193 (270)
T PF07942_consen 114 HSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAENIIEYIETIEHLLK 193 (270)
T ss_pred ecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHHHHHHHHHHHHHhc
Confidence 0124566667766653333 799999999888777888999999999999
Q ss_pred CCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 255 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
|||..+-..+-.-...+.. ......+. .+.+++..++++.||+++..+.
T Consensus 194 pgG~WIN~GPLlyh~~~~~-------------~~~~~sve--Ls~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 194 PGGYWINFGPLLYHFEPMS-------------IPNEMSVE--LSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred cCCEEEecCCccccCCCCC-------------CCCCcccC--CCHHHHHHHHHHCCCEEEEEEE
Confidence 9996554432111111100 00011122 6889999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.3e-08 Score=88.44 Aligned_cols=103 Identities=14% Similarity=0.056 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++.+...+|+++|+++..++.++++++..++ .++.++.+|+.+. +...++||+|++.=-..
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 679999999999999876555457999999999999999999988876 4799999998763 22245799999864421
Q ss_pred CCCCHHHHHHHHHHh--cCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARV--TAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~--LkpgG~l~~~~ 263 (380)
-.-...+++.+... |+|+|.+++..
T Consensus 133 -~g~~~~~l~~l~~~~~l~~~~iv~ve~ 159 (199)
T PRK10909 133 -KGLLEETINLLEDNGWLADEALIYVES 159 (199)
T ss_pred -CChHHHHHHHHHHCCCcCCCcEEEEEe
Confidence 12234555655553 78989888865
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.6e-09 Score=91.17 Aligned_cols=105 Identities=21% Similarity=0.233 Sum_probs=74.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC----CCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP----FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~----~~~~~fD~V 230 (380)
++.+|||||||+|..++.++... ..+|+..|.++ .++..+.++..++ ...++.+...|..+.. ...++||+|
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 48899999999999999999873 78999999999 8888988887765 5567888888876521 234689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++..+++.-.....+++.+.++|+++|.+++..
T Consensus 124 lasDv~Y~~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 124 LASDVLYDEELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEES--S-GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEecccchHHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 999999987778999999999999999977765
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-09 Score=99.36 Aligned_cols=103 Identities=23% Similarity=0.297 Sum_probs=86.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++..|||||||||.++...|+....+|+++|-|..+ +.|++.+..+++...|+++.+.++++.+|.+++|+|++-++-+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 489999999999999999999866789999998766 9999999999998889999999999877789999999866554
Q ss_pred CC---CCHHHHHHHHHHhcCCCcEEEE
Q 016921 238 HM---PDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~---~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
.+ .-.+.++-.=-+.|+|||.++=
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~~G~i~P 165 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKEGGLIYP 165 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCCCceEcc
Confidence 44 2345666667789999998753
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=92.83 Aligned_cols=106 Identities=24% Similarity=0.375 Sum_probs=70.7
Q ss_pred CCCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHH----HcC------------------
Q 016921 158 RPKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAA----ARG------------------ 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~----~~~------------------ 205 (380)
+..+|+..||+||. ++..+.+.. ..+|+|+|+|+.+++.|++-.- -.+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 47899999999998 334444411 2589999999999999987210 001
Q ss_pred -----CCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 206 -----LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 206 -----~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-.+|.|...|+.+.+.+.+.||+|+|.+++.++.. ..++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 114689999999884335689999999999999964 4789999999999999999974
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-08 Score=89.73 Aligned_cols=125 Identities=16% Similarity=0.154 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
..++....++.+-+.... .+..|||+|||+|..+..++..+ .+.|+++|.|+.++..|.+++...++.+++.+
T Consensus 130 TEE~V~~Vid~~~~~~~~------~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v 203 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHS------KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEV 203 (328)
T ss_pred HHHHHHHHHHHHhhhhhc------ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEE
Confidence 345555555554433322 25689999999999999999877 78999999999999999999999999889998
Q ss_pred EEcCCCCC-----CCCCCCccEEEeccccC-C-----C-------CC-------------HHHHHHHHHHhcCCCcEEEE
Q 016921 213 QVGDALQQ-----PFPDGQFDLVWSMESGE-H-----M-------PD-------------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 213 ~~~d~~~~-----~~~~~~fD~V~~~~~l~-~-----~-------~~-------------~~~~l~~~~r~LkpgG~l~~ 261 (380)
+..+++.. +...+++|+++++=-.- + + .+ .-.++.-+.|.|+|||.+.+
T Consensus 204 ~~~~me~d~~~~~~l~~~~~dllvsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~l 283 (328)
T KOG2904|consen 204 IHNIMESDASDEHPLLEGKIDLLVSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQL 283 (328)
T ss_pred EecccccccccccccccCceeEEecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEE
Confidence 87665542 34568999999852110 0 0 00 12356678899999999988
Q ss_pred Eec
Q 016921 262 VTW 264 (380)
Q Consensus 262 ~~~ 264 (380)
...
T Consensus 284 e~~ 286 (328)
T KOG2904|consen 284 ELV 286 (328)
T ss_pred Eec
Confidence 653
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.7e-09 Score=98.96 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=81.7
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHH------------------H-----cC-
Q 016921 159 PKNVVDVGCGIGG----SSRYLAKKF-----GAKCQGITLSPVQAQRANALAA------------------A-----RG- 205 (380)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~------------------~-----~~- 205 (380)
..+|+..||+||. ++..+.+.. ..+|+|+|+|+.+++.|++-.- . .+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 5899999999998 334444432 2579999999999999987520 0 00
Q ss_pred ------CCCCeEEEEcCCCCCCCC-CCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 206 ------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-..|.|.+.|+.+.+++ .+.||+|+|.+++.|+.. ..++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 224688999998875543 588999999999999954 6789999999999999998864
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.6e-09 Score=93.22 Aligned_cols=135 Identities=20% Similarity=0.192 Sum_probs=97.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCC--CCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQ--PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~--~~~~~~fD~V~~~ 233 (380)
.+.+|||...|-|..++..+++ |+ +|+-++.++..++.|.-+-=..++ ..+++++.+|+.+. .++|++||+|+..
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~r-GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHD 212 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALER-GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHD 212 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHc-CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeC
Confidence 4999999999999999999998 66 999999999999887653211111 23689999998775 5789999999852
Q ss_pred ---cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 234 ---ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 234 ---~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+++.----..++.++++|+|||||+++-..-...... .. .--+..+.+.|+++|
T Consensus 213 PPRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~Pg~ry------------------rG-----~d~~~gVa~RLr~vG 269 (287)
T COG2521 213 PPRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNPGKRY------------------RG-----LDLPKGVAERLRRVG 269 (287)
T ss_pred CCccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCCCccc------------------cc-----CChhHHHHHHHHhcC
Confidence 1111100136899999999999999987652211100 00 123578889999999
Q ss_pred CcEEEE
Q 016921 311 LEDIKA 316 (380)
Q Consensus 311 f~~v~~ 316 (380)
|+++..
T Consensus 270 F~~v~~ 275 (287)
T COG2521 270 FEVVKK 275 (287)
T ss_pred ceeeee
Confidence 997764
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=4.6e-09 Score=92.33 Aligned_cols=93 Identities=20% Similarity=0.284 Sum_probs=71.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|||+|||+|.++..++++. ..+|+++|+++.+++.|+++. .++.++.+|+...++ +++||+|+++=
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~------~~~~~~~~D~~~~~~-~~~FDlIIsNP 122 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV------PEATWINADALTTEF-DTLFDMAISNP 122 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc------cCCEEEEcchhcccc-cCCccEEEECC
Confidence 6799999999999999998753 458999999999999999764 358899999987654 57899999863
Q ss_pred ccCCC--CC----------HHHHHHHHHHhcCCCcE
Q 016921 235 SGEHM--PD----------KSKFVSELARVTAPAGT 258 (380)
Q Consensus 235 ~l~~~--~~----------~~~~l~~~~r~LkpgG~ 258 (380)
-..-. .+ ...+++.+.+++++|+.
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 22211 11 34688888886666664
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=7.1e-09 Score=91.61 Aligned_cols=103 Identities=24% Similarity=0.354 Sum_probs=88.2
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEEEeccc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWSMES 235 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~~~~ 235 (380)
..+||||||.|.+...+|++. ...++|||+....+..+.+++.+.++. |+.+++.|+..+ -+++++.|-|+..+-
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 579999999999999999988 678999999999999999999999985 899999999874 134569999998765
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
=-|.... ..+++.+.++|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 5444221 579999999999999999976
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.4e-08 Score=80.56 Aligned_cols=127 Identities=21% Similarity=0.200 Sum_probs=89.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|+|+|||||.+++..+-.....|+|+|+++++++.+++++.+ +..++.|+.+|+.++. ..+|.|+++=-+.-
T Consensus 46 g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~---~~~dtvimNPPFG~ 120 (198)
T COG2263 46 GKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR---GKFDTVIMNPPFGS 120 (198)
T ss_pred CCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC---CccceEEECCCCcc
Confidence 788999999999999988765357899999999999999999987 3368999999999874 67888777532221
Q ss_pred C---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 239 M---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
. .|. .++..+.+.- .++ +.+++--+.+.+++..+++|+++..
T Consensus 121 ~~rhaDr-~Fl~~Ale~s----~vV------------------------------YsiH~a~~~~f~~~~~~~~G~~v~~ 165 (198)
T COG2263 121 QRRHADR-PFLLKALEIS----DVV------------------------------YSIHKAGSRDFVEKFAADLGGTVTH 165 (198)
T ss_pred ccccCCH-HHHHHHHHhh----heE------------------------------EEeeccccHHHHHHHHHhcCCeEEE
Confidence 1 233 3444444432 111 1112223567888999999999887
Q ss_pred EEecCCCcCC
Q 016921 316 AEDWSQNVAP 325 (380)
Q Consensus 316 ~~~~~~~~~~ 325 (380)
.......+.+
T Consensus 166 ~~~~~~~iP~ 175 (198)
T COG2263 166 IERARFPIPR 175 (198)
T ss_pred EEEEEEecCc
Confidence 7655555443
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.2e-09 Score=96.59 Aligned_cols=94 Identities=20% Similarity=0.296 Sum_probs=75.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
...++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++...+..++++++.+|+.
T Consensus 22 ~~i~~~Iv~~~~~~~-----~~~VLEIG~G~G~LT~~Ll~~-~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal 95 (294)
T PTZ00338 22 PLVLDKIVEKAAIKP-----TDTVLEIGPGTGNLTEKLLQL-AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDAL 95 (294)
T ss_pred HHHHHHHHHhcCCCC-----cCEEEEecCchHHHHHHHHHh-CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHh
Confidence 346677777776654 889999999999999999987 77899999999999999999877665578999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~ 241 (380)
+.++ ..||.|+++ .-+++..
T Consensus 96 ~~~~--~~~d~VvaN-lPY~Ist 115 (294)
T PTZ00338 96 KTEF--PYFDVCVAN-VPYQISS 115 (294)
T ss_pred hhcc--cccCEEEec-CCcccCc
Confidence 8764 368988764 3444443
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.2e-09 Score=94.07 Aligned_cols=86 Identities=29% Similarity=0.395 Sum_probs=70.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+.++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++.++++|+.
T Consensus 15 ~~~~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~L~~~-~~~v~~vEid~~~~~~l~~~~~~---~~~v~ii~~D~~ 85 (258)
T PRK14896 15 DRVVDRIVEYAEDTD-----GDPVLEIGPGKGALTDELAKR-AKKVYAIELDPRLAEFLRDDEIA---AGNVEIIEGDAL 85 (258)
T ss_pred HHHHHHHHHhcCCCC-----cCeEEEEeCccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHhcc---CCCEEEEEeccc
Confidence 346667777666544 889999999999999999998 78999999999999999987754 258999999999
Q ss_pred CCCCCCCCccEEEeccc
Q 016921 219 QQPFPDGQFDLVWSMES 235 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~ 235 (380)
+++++ .||.|+++--
T Consensus 86 ~~~~~--~~d~Vv~NlP 100 (258)
T PRK14896 86 KVDLP--EFNKVVSNLP 100 (258)
T ss_pred cCCch--hceEEEEcCC
Confidence 88764 4898887644
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.5e-09 Score=95.02 Aligned_cols=83 Identities=23% Similarity=0.293 Sum_probs=67.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+++.+++.+.+.. +.+|||||||+|.++..++++ +.+|+|+|+++.|++.+++++.. ++++++++|+.++
T Consensus 30 i~~~i~~~l~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 30 ILDKIVDAAGPQP-----GDNVLEIGPGLGALTEPLLER-AAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred HHHHHHHhcCCCC-----cCeEEEeCCCccHHHHHHHHh-CCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 5666677666544 789999999999999999998 56999999999999999886632 5799999999998
Q ss_pred CCCCCCccEEEec
Q 016921 221 PFPDGQFDLVWSM 233 (380)
Q Consensus 221 ~~~~~~fD~V~~~ 233 (380)
++++-.+|.|+++
T Consensus 100 ~~~~~~~~~vv~N 112 (272)
T PRK00274 100 DLSELQPLKVVAN 112 (272)
T ss_pred CHHHcCcceEEEe
Confidence 7653225777765
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.6e-08 Score=80.65 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=107.5
Q ss_pred HHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHH
Q 016921 99 IAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178 (380)
Q Consensus 99 i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~ 178 (380)
++..++..-.++..|......-|---+.+ .-+.++|....+.+. +.-|||+|.|||.++..+..
T Consensus 5 ~~~~f~~e~~F~k~wi~~PrtVGaI~PsS-----------s~lA~~M~s~I~pes-----glpVlElGPGTGV~TkaIL~ 68 (194)
T COG3963 5 LARKFDEEISFFKGWIDNPRTVGAILPSS-----------SILARKMASVIDPES-----GLPVLELGPGTGVITKAILS 68 (194)
T ss_pred hhhhHHHHHHHHHHHhcCCceeeeecCCc-----------HHHHHHHHhccCccc-----CCeeEEEcCCccHhHHHHHh
Confidence 44555656666666655433333222211 114455566555554 88999999999999999998
Q ss_pred Hc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEEEeccccCCCCC--HHHHHHHH
Q 016921 179 KF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMPD--KSKFVSEL 249 (380)
Q Consensus 179 ~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~~--~~~~l~~~ 249 (380)
+. ...++.++.|++......++. +.++++.+|+.++. ..+..||.|+|.--+..++- ..++++.+
T Consensus 69 ~gv~~~~L~~iE~~~dF~~~L~~~~------p~~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~~~iaile~~ 142 (194)
T COG3963 69 RGVRPESLTAIEYSPDFVCHLNQLY------PGVNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMHRRIAILESL 142 (194)
T ss_pred cCCCccceEEEEeCHHHHHHHHHhC------CCccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHHHHHHHHHHH
Confidence 75 578999999999988877755 45778999998863 45678999999888877754 46899999
Q ss_pred HHhcCCCcEEEEEecc
Q 016921 250 ARVTAPAGTIIIVTWC 265 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~ 265 (380)
...|.+||.++...++
T Consensus 143 ~~rl~~gg~lvqftYg 158 (194)
T COG3963 143 LYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhcCCCCeEEEEEec
Confidence 9999999999988765
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=98.44 Aligned_cols=100 Identities=24% Similarity=0.301 Sum_probs=76.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+..|||||||+|.++...++.. ..+|++|+-++.+....++++...++.++|+++.+|++++..+ +++|+|++-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE 265 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELP-EKVDIIVSE 265 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence 5789999999999987776652 3699999999998888888878888889999999999998754 599999973
Q ss_pred cccCCC---CCHHHHHHHHHHhcCCCcEEE
Q 016921 234 ESGEHM---PDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 234 ~~l~~~---~~~~~~l~~~~r~LkpgG~l~ 260 (380)
. +..+ .-..+.+..+.+.|||||.++
T Consensus 266 l-LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 266 L-LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp ---BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred c-cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 3 2222 224567888999999998765
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.4e-08 Score=90.06 Aligned_cols=151 Identities=22% Similarity=0.253 Sum_probs=108.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
-...+|+|.|.|..+..+...+ .+|-+++.+...+..+..... . .|+.+-+|..+. .|.+ |+|++.+++||
T Consensus 178 v~~avDvGgGiG~v~k~ll~~f-p~ik~infdlp~v~~~a~~~~-~----gV~~v~gdmfq~-~P~~--daI~mkWiLhd 248 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKY-PHIKGINFDLPFVLAAAPYLA-P----GVEHVAGDMFQD-TPKG--DAIWMKWILHD 248 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhC-CCCceeecCHHHHHhhhhhhc-C----Ccceeccccccc-CCCc--CeEEEEeeccc
Confidence 4789999999999999999864 458899998887766665543 2 388888888765 4433 69999999999
Q ss_pred CCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc--ccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 239 MPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE--SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 239 ~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+.|. .++|++++..|+|||.+++.|...+....... .......+.+.......+.. .+..+++.++.++||.+.
T Consensus 249 wtDedcvkiLknC~~sL~~~GkIiv~E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gke--rt~~e~q~l~~~~gF~~~ 326 (342)
T KOG3178|consen 249 WTDEDCVKILKNCKKSLPPGGKIIVVENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKE--RTLKEFQALLPEEGFPVC 326 (342)
T ss_pred CChHHHHHHHHHHHHhCCCCCEEEEEeccCCCCCCccccccceeehhHHHHHHHhcccee--ccHHHHHhcchhhcCcee
Confidence 9764 69999999999999999999975543211111 11111123333333333333 589999999999999988
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
.+....
T Consensus 327 ~~~~~~ 332 (342)
T KOG3178|consen 327 MVALTA 332 (342)
T ss_pred EEEecc
Confidence 765443
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.85 E-value=3e-08 Score=95.12 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.+...+... ++.+|||++||+|.++..++.. +.+|+|+|+++.+++.|+++++..++ .+++|+.
T Consensus 215 ~~~~~~l~~~~~~~l~~~-----~~~~vLDL~cG~G~~~l~la~~-~~~v~~vE~~~~av~~a~~N~~~~~~-~~~~~~~ 287 (374)
T TIGR02085 215 PKVAAQLYATARQWVREI-----PVTQMWDLFCGVGGFGLHCAGP-DTQLTGIEIESEAIACAQQSAQMLGL-DNLSFAA 287 (374)
T ss_pred HHHHHHHHHHHHHHHHhc-----CCCEEEEccCCccHHHHHHhhc-CCeEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 334444445444444322 2679999999999999999976 68999999999999999999988887 4899999
Q ss_pred cCCCCCCC-CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQPF-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+... ..++||+|++.=--. .-...+++.+. .++|++.+++..
T Consensus 288 ~d~~~~~~~~~~~~D~vi~DPPr~--G~~~~~l~~l~-~~~p~~ivyvsc 334 (374)
T TIGR02085 288 LDSAKFATAQMSAPELVLVNPPRR--GIGKELCDYLS-QMAPKFILYSSC 334 (374)
T ss_pred CCHHHHHHhcCCCCCEEEECCCCC--CCcHHHHHHHH-hcCCCeEEEEEe
Confidence 99876421 124699998752211 11234555554 479999888875
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.9e-08 Score=90.72 Aligned_cols=115 Identities=21% Similarity=0.239 Sum_probs=89.4
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
..++....++. |..|||-=||||.++....-. |++++|+|++..|+.-|+.++...++.+-......|+..+|+
T Consensus 187 R~mVNLa~v~~-----G~~vlDPFcGTGgiLiEagl~-G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl 260 (347)
T COG1041 187 RAMVNLARVKR-----GELVLDPFCGTGGILIEAGLM-GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPL 260 (347)
T ss_pred HHHHHHhcccc-----CCEeecCcCCccHHHHhhhhc-CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCC
Confidence 33444444544 899999999999999988654 999999999999999999999888765433344449999999
Q ss_pred CCCCccEEEecccc-----CCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESG-----EHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l-----~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++|.|++---. ..... ..++++.+.++||+||++++..
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~ 310 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAA 310 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEec
Confidence 88889999973211 11111 3678999999999999999965
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.84 E-value=4.4e-08 Score=88.57 Aligned_cols=105 Identities=19% Similarity=0.298 Sum_probs=81.7
Q ss_pred CCEEEEECCCcCh----HHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH-----cCCC----------------
Q 016921 159 PKNVVDVGCGIGG----SSRYLAKKF------GAKCQGITLSPVQAQRANALAAA-----RGLA---------------- 207 (380)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~-----~~~~---------------- 207 (380)
..+|+-.||+||. ++..+.+.. ..+|+|+|+|...++.|++-.-. .+++
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 7899999999998 444555544 35899999999999998863211 1211
Q ss_pred -------CCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 208 -------DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 208 -------~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|.|...|+...++..+.||+|+|.+++-++.. ..++++.++..|+|||.|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 2477888887776534578999999999999964 4689999999999999999965
|
|
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.8e-08 Score=84.14 Aligned_cols=121 Identities=14% Similarity=0.219 Sum_probs=92.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~~ 235 (380)
..++|||||=+..+...... -..|+.||+++. .-.+.+.|+.+.|+| +++||+|++..+
T Consensus 52 ~lrlLEVGals~~N~~s~~~--~fdvt~IDLns~----------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 52 KLRLLEVGALSTDNACSTSG--WFDVTRIDLNSQ----------------HPGILQQDFMERPLPKNESEKFDVISLSLV 113 (219)
T ss_pred cceEEeecccCCCCcccccC--ceeeEEeecCCC----------------CCCceeeccccCCCCCCcccceeEEEEEEE
Confidence 57999999986655443322 346999999872 234588898887764 679999999999
Q ss_pred cCCCCCH---HHHHHHHHHhcCCCcE-----EEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016921 236 GEHMPDK---SKFVSELARVTAPAGT-----IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 236 l~~~~~~---~~~l~~~~r~LkpgG~-----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (380)
|.+++++ .+.++.+++.|+|+|. |+++.+.. .+ ...++.+.+.+..+++
T Consensus 114 LNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVlP~~----------------Cv-------~NSRy~~~~~l~~im~ 170 (219)
T PF11968_consen 114 LNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVLPLP----------------CV-------TNSRYMTEERLREIME 170 (219)
T ss_pred EeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEeCch----------------Hh-------hcccccCHHHHHHHHH
Confidence 9999986 5799999999999999 88875311 00 1124578899999999
Q ss_pred hCCCcEEEEEecC
Q 016921 308 SLSLEDIKAEDWS 320 (380)
Q Consensus 308 ~aGf~~v~~~~~~ 320 (380)
..||..+..+.-.
T Consensus 171 ~LGf~~~~~~~~~ 183 (219)
T PF11968_consen 171 SLGFTRVKYKKSK 183 (219)
T ss_pred hCCcEEEEEEecC
Confidence 9999999875443
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.5e-08 Score=82.30 Aligned_cols=116 Identities=25% Similarity=0.301 Sum_probs=83.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCE---------EEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAK---------CQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~---------v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
+...++.....+. +..|||--||+|.+.++.+... +.. ++|+|+++.+++.|++++...++...+
T Consensus 16 lA~~ll~la~~~~-----~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i 90 (179)
T PF01170_consen 16 LAAALLNLAGWRP-----GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYI 90 (179)
T ss_dssp HHHHHHHHTT--T-----TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGE
T ss_pred HHHHHHHHhCCCC-----CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCce
Confidence 4445556665554 8899999999999999887765 444 889999999999999999999988889
Q ss_pred EEEEcCCCCCCCCCCCccEEEeccccCCC-CC-------HHHHHHHHHHhcCCCcEEEE
Q 016921 211 SFQVGDALQQPFPDGQFDLVWSMESGEHM-PD-------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 211 ~~~~~d~~~~~~~~~~fD~V~~~~~l~~~-~~-------~~~~l~~~~r~LkpgG~l~~ 261 (380)
.+.+.|+.++++.++++|.|++.--...- .+ ...+++++.++|++...+++
T Consensus 91 ~~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l~ 149 (179)
T PF01170_consen 91 DFIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFLT 149 (179)
T ss_dssp EEEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEEE
T ss_pred EEEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEEE
Confidence 99999999998778899999986433221 11 13577889999999333333
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.78 E-value=9e-08 Score=82.04 Aligned_cols=148 Identities=16% Similarity=0.172 Sum_probs=106.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
.+.+.+++.+.-.-.+.. .+.+++|||+|.|..++.++-.. ..+++.+|.+..-....+......++. |+++++
T Consensus 30 ~~~~Hi~DSL~~~~~~~~----~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~ 104 (184)
T PF02527_consen 30 IWERHILDSLALLPFLPD----FGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVIN 104 (184)
T ss_dssp HHHHHHHHHHGGGGCS-C----CCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEE
T ss_pred HHHHHHHHHHHhhhhhcc----CCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEE
Confidence 344455555543333332 13389999999999999998877 679999999999999999999888984 899999
Q ss_pred cCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC
Q 016921 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294 (380)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (380)
..+++ +....+||+|+++.+ .....++.-+...|++||.+++.--. . ..+
T Consensus 105 ~R~E~-~~~~~~fd~v~aRAv----~~l~~l~~~~~~~l~~~G~~l~~KG~------~-------~~~------------ 154 (184)
T PF02527_consen 105 GRAEE-PEYRESFDVVTARAV----APLDKLLELARPLLKPGGRLLAYKGP------D-------AEE------------ 154 (184)
T ss_dssp S-HHH-TTTTT-EEEEEEESS----SSHHHHHHHHGGGEEEEEEEEEEESS---------------HH------------
T ss_pred eeecc-cccCCCccEEEeehh----cCHHHHHHHHHHhcCCCCEEEEEcCC------C-------hHH------------
Confidence 99998 445689999999754 46788999999999999999886410 0 001
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
..++....++..|.+...+..+..
T Consensus 155 ---El~~~~~~~~~~~~~~~~v~~~~~ 178 (184)
T PF02527_consen 155 ---ELEEAKKAWKKLGLKVLSVPEFEL 178 (184)
T ss_dssp ---HHHTHHHHHHCCCEEEEEEEEEE-
T ss_pred ---HHHHHHhHHHHhCCEEeeeccccC
Confidence 123455667778888888776654
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.78 E-value=7.3e-08 Score=83.42 Aligned_cols=104 Identities=9% Similarity=-0.052 Sum_probs=76.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-CCC-CccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-PDG-QFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-~~~-~fD~V~~~~ 234 (380)
+.+|||++||+|.++..++.+....|+++|.++..++.++++++..+...+++++.+|+.+. . + ... .||+|+..=
T Consensus 50 g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DP 129 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDP 129 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECc
Confidence 78999999999999999999844589999999999999999998888766899999998553 1 1 122 467776532
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
-. .-.....++..+.+ +|+++|.+++-.
T Consensus 130 Py-~~~~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 130 PF-FNGALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred CC-CCCcHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 22 22233455555544 678888776644
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.5e-07 Score=85.59 Aligned_cols=103 Identities=25% Similarity=0.348 Sum_probs=74.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+++.+++.+.+.. +.+|||||||+|.++..+++. +..|+++|+++.+++.++++... .+++.++.+|+.+
T Consensus 16 ~i~~~i~~~~~~~~-----~~~VLEiG~G~G~lt~~L~~~-~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~ 86 (253)
T TIGR00755 16 SVIQKIVEAANVLE-----GDVVLEIGPGLGALTEPLLKR-AKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALK 86 (253)
T ss_pred HHHHHHHHhcCCCC-----cCEEEEeCCCCCHHHHHHHHh-CCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhc
Confidence 35667777666554 889999999999999999998 56899999999999999887643 2579999999998
Q ss_pred CCCCCCCcc---EEEeccccCCCCCHHHHHHHHHHhcCCCcE
Q 016921 220 QPFPDGQFD---LVWSMESGEHMPDKSKFVSELARVTAPAGT 258 (380)
Q Consensus 220 ~~~~~~~fD---~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~ 258 (380)
.+++ .|| .|+++- -+|+. ..++.++.. .+|+.
T Consensus 87 ~~~~--~~d~~~~vvsNl-Py~i~--~~il~~ll~--~~~~~ 121 (253)
T TIGR00755 87 VDLP--DFPKQLKVVSNL-PYNIS--SPLIFKLLE--KPKFR 121 (253)
T ss_pred CChh--HcCCcceEEEcC-ChhhH--HHHHHHHhc--cCCCc
Confidence 8754 466 555543 23332 334444443 45544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.2e-09 Score=99.68 Aligned_cols=99 Identities=25% Similarity=0.424 Sum_probs=70.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEE---eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGI---TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~gi---D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
-..+||||||+|.|+.+|.++ +..+..+ |..+.+++.|.+ .|+|.-+. ......+||+++.||+|+|..+
T Consensus 118 iR~~LDvGcG~aSF~a~l~~r-~V~t~s~a~~d~~~~qvqfale----RGvpa~~~--~~~s~rLPfp~~~fDmvHcsrc 190 (506)
T PF03141_consen 118 IRTALDVGCGVASFGAYLLER-NVTTMSFAPNDEHEAQVQFALE----RGVPAMIG--VLGSQRLPFPSNAFDMVHCSRC 190 (506)
T ss_pred eEEEEeccceeehhHHHHhhC-CceEEEcccccCCchhhhhhhh----cCcchhhh--hhccccccCCccchhhhhcccc
Confidence 356899999999999999987 4332222 333445544433 45543222 2234678999999999999887
Q ss_pred cCCC-CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHM-PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+... ++-..++-++.|+|+|||+++++..
T Consensus 191 ~i~W~~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 191 LIPWHPNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cccchhcccceeehhhhhhccCceEEecCC
Confidence 7555 4446788999999999999999763
|
; GO: 0008168 methyltransferase activity |
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.3e-07 Score=94.09 Aligned_cols=127 Identities=14% Similarity=0.190 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHHcCCCCC--CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 136 AAQVRMIEETLRFAGVSED--PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~--~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
..+++.++.......+... ....+..+||||||.|.++..+|... ...++|+|+...-+..+.++....++ .|+.+
T Consensus 323 ~~q~~~~e~~~p~~~i~~eklf~~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~ 401 (506)
T PRK01544 323 GVQQNLLDNELPKYLFSKEKLVNEKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLL 401 (506)
T ss_pred HHHHHHHHhhhhhhCCCHHHhCCCCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEE
Confidence 4566666666666554421 12246789999999999999999987 78999999999999998888887777 58988
Q ss_pred EEcCCCCC--CCCCCCccEEEeccccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 213 QVGDALQQ--PFPDGQFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 213 ~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+..+ -++++++|.|++.+-=-|.... ..+++.++++|||||.+.+.+
T Consensus 402 ~~~~~~~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 402 FPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred EcCCHHHHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 88887543 2678899999987655554221 579999999999999999876
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.74 E-value=8e-08 Score=81.64 Aligned_cols=100 Identities=21% Similarity=0.291 Sum_probs=80.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC---------CCCeEEEEcCCCCCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL---------ADKVSFQVGDALQQPFPDG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~---------~~~v~~~~~d~~~~~~~~~ 225 (380)
|+.+.||+|+|+|.++..++... +..++|||.-++.++.+++++.+.-. ..++.++++|.....-+..
T Consensus 82 pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e~a 161 (237)
T KOG1661|consen 82 PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAEQA 161 (237)
T ss_pred cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCccC
Confidence 59999999999999999888765 34459999999999999998865431 2468899999988766678
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+||.|++.... .+.-+++...|++||++++--
T Consensus 162 ~YDaIhvGAaa------~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 162 PYDAIHVGAAA------SELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred CcceEEEccCc------cccHHHHHHhhccCCeEEEee
Confidence 99999987433 345677888999999999854
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.7e-07 Score=83.53 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=80.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
.+..|||+|||+|.++...++....+|++++.| +|.+.|++.++.+.+.++|.++.+-++++.+| ++.|+|++--+-.
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLP-Ek~DviISEPMG~ 254 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIELP-EKVDVIISEPMGY 254 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccccccCc-hhccEEEeccchh
Confidence 478899999999999999998856789999985 58999999999888899999999999998776 7899998742222
Q ss_pred CCCC--HHHHHHHHHHhcCCCcEEEE
Q 016921 238 HMPD--KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~~~--~~~~l~~~~r~LkpgG~l~~ 261 (380)
-+-+ .-+..-.+.+.|||.|..+=
T Consensus 255 mL~NERMLEsYl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 255 MLVNERMLESYLHARKWLKPNGKMFP 280 (517)
T ss_pred hhhhHHHHHHHHHHHhhcCCCCcccC
Confidence 2211 12333346699999998764
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=83.84 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=66.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (380)
.+..++...++. .++.+|||+|||||.++..+++....+|+++|+++.|+....+ .. +++ .+...|+..
T Consensus 62 kL~~~l~~~~~~----~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~---~~---~~v~~~~~~ni~~ 131 (228)
T TIGR00478 62 KLKEALEEFNID----VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLR---QD---ERVKVLERTNIRY 131 (228)
T ss_pred HHHHHHHhcCCC----CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHh---cC---CCeeEeecCCccc
Confidence 445556655442 2478999999999999999998734589999999988876211 11 232 234445543
Q ss_pred CCC-----CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 220 QPF-----PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 220 ~~~-----~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
... .-..+|++++.. ...+..+.+.|+| |.+++.
T Consensus 132 ~~~~~~~~d~~~~DvsfiS~--------~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 132 VTPADIFPDFATFDVSFISL--------ISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CCHhHcCCCceeeeEEEeeh--------HhHHHHHHHHhCc-CeEEEE
Confidence 321 113566555533 2358889999999 776664
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-07 Score=83.11 Aligned_cols=85 Identities=22% Similarity=0.327 Sum_probs=74.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++...++++ +..|||||.|||.++..|.+. +++|+++++++.|++..+++.........++++++|+...
T Consensus 46 v~~~I~~ka~~k~-----tD~VLEvGPGTGnLT~~lLe~-~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~ 119 (315)
T KOG0820|consen 46 VIDQIVEKADLKP-----TDVVLEVGPGTGNLTVKLLEA-GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKT 119 (315)
T ss_pred HHHHHHhccCCCC-----CCEEEEeCCCCCHHHHHHHHh-cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccC
Confidence 6777888887776 999999999999999999998 8999999999999999999987665558899999999887
Q ss_pred CCCCCCccEEEec
Q 016921 221 PFPDGQFDLVWSM 233 (380)
Q Consensus 221 ~~~~~~fD~V~~~ 233 (380)
++| .||.++++
T Consensus 120 d~P--~fd~cVsN 130 (315)
T KOG0820|consen 120 DLP--RFDGCVSN 130 (315)
T ss_pred CCc--ccceeecc
Confidence 654 68988873
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.66 E-value=5.1e-07 Score=78.16 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=93.7
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
-.++.-+++... +.++||||.=||..++.+|... +.+|+++|+++...+.+.+..+..|+..+|++++++
T Consensus 62 g~fl~~li~~~~--------ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~ 133 (237)
T KOG1663|consen 62 GQFLQMLIRLLN--------AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGP 133 (237)
T ss_pred HHHHHHHHHHhC--------CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecc
Confidence 345666666553 7889999999999999999887 789999999999999999999999999999999999
Q ss_pred CCCC------CCCCCCccEEEeccccCCC-CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 217 ALQQ------PFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~~~------~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+. ..+.++||+++.- |. .+....+.++.+++|+||.|++-.
T Consensus 134 a~esLd~l~~~~~~~tfDfaFvD----adK~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 134 ALESLDELLADGESGTFDFAFVD----ADKDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred hhhhHHHHHhcCCCCceeEEEEc----cchHHHHHHHHHHHhhcccccEEEEec
Confidence 8662 2346899999874 32 233578899999999999999865
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.2e-07 Score=87.07 Aligned_cols=99 Identities=17% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||++||+|..++.++...+ ..|+++|+++..++.++++++.+++. ++.+.++|+..+....+.||+|++.= .
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP-~- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDP-F- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECC-C-
Confidence 46899999999999999988764 48999999999999999999888874 67799999876421146799998842 2
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..+..++..+.+.+++||.+.++
T Consensus 135 --Gs~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 --GSPAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred --CCcHHHHHHHHHHhcCCCEEEEE
Confidence 34567888888889999999997
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.7e-07 Score=89.06 Aligned_cols=104 Identities=27% Similarity=0.298 Sum_probs=86.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
+.+|||+=|=||.++...|.. |+ +|+.||+|...++.|++++..+|+. .++.|+++|+.+. .-...+||+|++
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 899999999999999999986 66 9999999999999999999999984 5689999998774 123459999997
Q ss_pred c---------cccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 M---------ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~---------~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ....-..+...++..+.++|+|||.++++.
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s 336 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSS 336 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 2 111112345678899999999999999986
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.9e-07 Score=87.70 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=79.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||.||+|.|..+..+++.. ..+|+.+|+++.+++.+++.+...+ -.++++++.+|+... ....++||+|++.
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~D 183 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIGD 183 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEec
Confidence 6799999999999999988864 5689999999999999999875321 136899999998774 3335789999976
Q ss_pred cccCCC----C---CHHHHHH-HHHHhcCCCcEEEEE
Q 016921 234 ESGEHM----P---DKSKFVS-ELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~----~---~~~~~l~-~~~r~LkpgG~l~~~ 262 (380)
.. ... + -..++++ .+.+.|+|||.+++.
T Consensus 184 ~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 184 LA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred CC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 31 111 0 0246777 899999999998774
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=81.97 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=75.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++..|||+-||.|.+++.+++.. +..|+++|++|...+..++.+..+++..++..+++|+.++.. .+.||.|++..-
T Consensus 101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-~~~~drvim~lp- 178 (200)
T PF02475_consen 101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-EGKFDRVIMNLP- 178 (200)
T ss_dssp TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG----TT-EEEEEE--T-
T ss_pred cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-ccccCEEEECCh-
Confidence 48999999999999999999844 788999999999999999999999998889999999998754 789999988532
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~ 260 (380)
.....++..+.+++++||.+-
T Consensus 179 ---~~~~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 179 ---ESSLEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp ---SSGGGGHHHHHHHEEEEEEEE
T ss_pred ---HHHHHHHHHHHHHhcCCcEEE
Confidence 223467888999999998763
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=74.64 Aligned_cols=110 Identities=18% Similarity=0.245 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+..++..+.+.+ +.+|||-|+|+|.++..+++.. -.+++-+|+...-.+.|.+.+++.|+++++.+.+-|+..
T Consensus 94 ia~I~~~L~i~P-----GsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~ 168 (314)
T KOG2915|consen 94 IAMILSMLEIRP-----GSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCG 168 (314)
T ss_pred HHHHHHHhcCCC-----CCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeeccc
Confidence 344455555554 9999999999999999999987 368999999999999999999999999999999999988
Q ss_pred CCCC--CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 220 QPFP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 220 ~~~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
..|. +..+|.|+. -++.|..++-.++.+||.+|.-++
T Consensus 169 ~GF~~ks~~aDaVFL-----DlPaPw~AiPha~~~lk~~g~r~c 207 (314)
T KOG2915|consen 169 SGFLIKSLKADAVFL-----DLPAPWEAIPHAAKILKDEGGRLC 207 (314)
T ss_pred CCccccccccceEEE-----cCCChhhhhhhhHHHhhhcCceEE
Confidence 6543 577898876 356777888889999998885333
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.1e-07 Score=84.81 Aligned_cols=98 Identities=26% Similarity=0.360 Sum_probs=81.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+..++|+|||.|..... ...+.++|.|++...+..+++ .+. ....+|+..+|+.+.+||.+++..++|
T Consensus 46 gsv~~d~gCGngky~~~---~p~~~~ig~D~c~~l~~~ak~--------~~~~~~~~ad~l~~p~~~~s~d~~lsiavih 114 (293)
T KOG1331|consen 46 GSVGLDVGCGNGKYLGV---NPLCLIIGCDLCTGLLGGAKR--------SGGDNVCRADALKLPFREESFDAALSIAVIH 114 (293)
T ss_pred cceeeecccCCcccCcC---CCcceeeecchhhhhcccccc--------CCCceeehhhhhcCCCCCCccccchhhhhhh
Confidence 78899999999864432 125689999999998887764 223 678899999999999999999999999
Q ss_pred CCCC---HHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 238 HMPD---KSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
|+.. ...+++++.|+|+|||...+..|...
T Consensus 115 hlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~ 147 (293)
T KOG1331|consen 115 HLSTRERRERALEELLRVLRPGGNALVYVWALE 147 (293)
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCceEEEEehhh
Confidence 9954 46899999999999999988877543
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.9e-07 Score=83.78 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=91.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----------------C-----------CCe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----------------A-----------DKV 210 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----------------~-----------~~v 210 (380)
++.++||||||.-..-..-+...-.+|+..|.++...+..++.++..+- . ..|
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~V 135 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAV 135 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHE
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhh
Confidence 3789999999985543332323245799999999988877766543321 0 113
Q ss_pred -EEEEcCCCCCC-CCC-----CCccEEEeccccCCC-CCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchH
Q 016921 211 -SFQVGDALQQP-FPD-----GQFDLVWSMESGEHM-PDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (380)
Q Consensus 211 -~~~~~d~~~~~-~~~-----~~fD~V~~~~~l~~~-~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 279 (380)
.++..|+.+.+ +.. .+||+|++.+.++.. +|. ..+++++.++|||||.|++.............
T Consensus 136 k~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~vG~----- 210 (256)
T PF01234_consen 136 KQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYMVGG----- 210 (256)
T ss_dssp EEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEEETT-----
T ss_pred ceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEEECC-----
Confidence 36778887753 322 359999999999877 343 67899999999999999998753222110000
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
..+.. -..+.+.+++.|+++||.+++.+
T Consensus 211 ---------~~F~~-l~l~ee~v~~al~~aG~~i~~~~ 238 (256)
T PF01234_consen 211 ---------HKFPC-LPLNEEFVREALEEAGFDIEDLE 238 (256)
T ss_dssp ---------EEEE----B-HHHHHHHHHHTTEEEEEEE
T ss_pred ---------Eeccc-ccCCHHHHHHHHHHcCCEEEecc
Confidence 00000 12578999999999999998876
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.4e-07 Score=85.23 Aligned_cols=116 Identities=16% Similarity=0.137 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......+++.+++.+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.|++++...++ .+++|+.
T Consensus 180 ~~~~~~l~~~v~~~~~~~------~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~-~~v~~~~ 251 (353)
T TIGR02143 180 AAVNIKMLEWACEVTQGS------KGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNI-DNVQIIR 251 (353)
T ss_pred HHHHHHHHHHHHHHhhcC------CCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEE
Confidence 334445555665554321 346999999999999999987 46999999999999999999988887 4799999
Q ss_pred cCCCCCC--------C---C-----CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQP--------F---P-----DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~--------~---~-----~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+.- + . ...||+|+..=- . -.-...+++.+. +|++.+++..
T Consensus 252 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~v~lDPP-R-~G~~~~~l~~l~---~~~~ivYvsC 311 (353)
T TIGR02143 252 MSAEEFTQAMNGVREFRRLKGIDLKSYNCSTIFVDPP-R-AGLDPDTCKLVQ---AYERILYISC 311 (353)
T ss_pred cCHHHHHHHHhhccccccccccccccCCCCEEEECCC-C-CCCcHHHHHHHH---cCCcEEEEEc
Confidence 9987631 0 0 113798887311 0 011134444443 4788888865
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=74.78 Aligned_cols=152 Identities=16% Similarity=0.104 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
...+.+.+++.+.-...... .+.+++|||+|.|..+..+|-.. ..+|+-+|....-+.+.+....+.++ +|+++
T Consensus 47 ~e~~~rHilDSl~~~~~~~~----~~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L-~nv~i 121 (215)
T COG0357 47 EELWQRHILDSLVLLPYLDG----KAKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGL-ENVEI 121 (215)
T ss_pred HHHHHHHHHHHhhhhhcccc----cCCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCC-CCeEE
Confidence 34555556655543332221 15899999999999999988544 67899999999999999998888888 58999
Q ss_pred EEcCCCCCCCCCCC-ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc
Q 016921 213 QVGDALQQPFPDGQ-FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY 291 (380)
Q Consensus 213 ~~~d~~~~~~~~~~-fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (380)
+++.+++..- ... ||+|+++.+ .+...++.-+...+|+||.+++.-+.. ..
T Consensus 122 ~~~RaE~~~~-~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~~k~~~-----------------~~------ 173 (215)
T COG0357 122 VHGRAEEFGQ-EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLAYKGLA-----------------GK------ 173 (215)
T ss_pred ehhhHhhccc-ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchhhhHHh-----------------hh------
Confidence 9999998752 223 999998754 466778888999999999877643210 00
Q ss_pred CCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 292 YLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 292 ~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
--..+.+......|+.++.+..+..+.
T Consensus 174 -----~e~~e~~~a~~~~~~~~~~~~~~~~p~ 200 (215)
T COG0357 174 -----DELPEAEKAILPLGGQVEKVFSLTVPE 200 (215)
T ss_pred -----hhHHHHHHHHHhhcCcEEEEEEeecCC
Confidence 013456677777899988887776654
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.55 E-value=7e-07 Score=85.33 Aligned_cols=117 Identities=17% Similarity=0.155 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......+++.+...+... +.+|||++||+|.++..+++. ..+|+|+|+++.+++.+++++...++ .+++|+
T Consensus 188 N~~~~e~l~~~v~~~~~~~------~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~-~~v~~~ 259 (362)
T PRK05031 188 NAAVNEKMLEWALDATKGS------KGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGI-DNVQII 259 (362)
T ss_pred CHHHHHHHHHHHHHHhhcC------CCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEE
Confidence 3444555666666554321 357999999999999999886 56999999999999999999988887 489999
Q ss_pred EcCCCCC-C-CC--------------CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 214 VGDALQQ-P-FP--------------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 214 ~~d~~~~-~-~~--------------~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+|+.+. + +. ..+||+|+..=- . -.-...+++.+.+ |++.++++.
T Consensus 260 ~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPP-R-~G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 260 RMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPP-R-AGLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred ECCHHHHHHHHhhcccccccccccccCCCCCEEEECCC-C-CCCcHHHHHHHHc---cCCEEEEEe
Confidence 9998763 1 10 125899887321 1 0112345555544 678777765
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.54 E-value=9.7e-06 Score=67.56 Aligned_cols=126 Identities=17% Similarity=0.275 Sum_probs=92.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
..-+||||||+|..+..+++.. +..+.++|++|..++..++.+..++. ++..++.|+..- +..++.|+++.+--.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~--~~~~V~tdl~~~-l~~~~VDvLvfNPPY 120 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV--HIDVVRTDLLSG-LRNESVDVLVFNPPY 120 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC--ccceeehhHHhh-hccCCccEEEECCCc
Confidence 6779999999999999999877 56789999999999998888877664 578888887663 334888888764211
Q ss_pred C-----CC------------CC----HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 237 E-----HM------------PD----KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 237 ~-----~~------------~~----~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
- -+ .+ .++++..+-.+|.|.|.+++.....
T Consensus 121 Vpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~----------------------------- 171 (209)
T KOG3191|consen 121 VPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRA----------------------------- 171 (209)
T ss_pred CcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhh-----------------------------
Confidence 0 00 01 2456677778888999998875311
Q ss_pred CCCHHHHHHHHHhCCCcEEEEE
Q 016921 296 WCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
-.++++.+.++.-||......
T Consensus 172 -N~p~ei~k~l~~~g~~~~~~~ 192 (209)
T KOG3191|consen 172 -NKPKEILKILEKKGYGVRIAM 192 (209)
T ss_pred -cCHHHHHHHHhhcccceeEEE
Confidence 135778888999998866544
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6e-07 Score=80.41 Aligned_cols=93 Identities=24% Similarity=0.286 Sum_probs=75.0
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
...++++++.+.+.+ +..|||||+|.|.++..|+++ +..|+++++++.+++..+++.. ..++++++.+|+.
T Consensus 16 ~~v~~kIv~~a~~~~-----~d~VlEIGpG~GaLT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaL 86 (259)
T COG0030 16 KNVIDKIVEAANISP-----GDNVLEIGPGLGALTEPLLER-AARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDAL 86 (259)
T ss_pred HHHHHHHHHhcCCCC-----CCeEEEECCCCCHHHHHHHhh-cCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchh
Confidence 346788888887764 899999999999999999998 7899999999999999888764 3368999999999
Q ss_pred CCCCCCC-CccEEEeccccCCCCC
Q 016921 219 QQPFPDG-QFDLVWSMESGEHMPD 241 (380)
Q Consensus 219 ~~~~~~~-~fD~V~~~~~l~~~~~ 241 (380)
..+++.- .++.|+++ .=+++..
T Consensus 87 k~d~~~l~~~~~vVaN-lPY~Iss 109 (259)
T COG0030 87 KFDFPSLAQPYKVVAN-LPYNISS 109 (259)
T ss_pred cCcchhhcCCCEEEEc-CCCcccH
Confidence 9887643 57777764 3344433
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.2e-07 Score=83.85 Aligned_cols=105 Identities=23% Similarity=0.254 Sum_probs=78.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-C--CCCCCccEEEec-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-P--FPDGQFDLVWSM- 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~--~~~~~fD~V~~~- 233 (380)
+.+|||+=|=||.++...+.....+|+.||.|..+++.+++++..+++. .+++|+..|+.+. . -..++||+|++.
T Consensus 124 gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDP 203 (286)
T PF10672_consen 124 GKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIILDP 203 (286)
T ss_dssp TCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE--
T ss_pred CCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEECC
Confidence 7899999999999999887652348999999999999999999999875 6899999998763 1 124689999972
Q ss_pred --cccCC---CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 --ESGEH---MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 --~~l~~---~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.=.. ..+...++..+.++|+|||.|+++.
T Consensus 204 PsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~s 238 (286)
T PF10672_consen 204 PSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCS 238 (286)
T ss_dssp SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEc
Confidence 11011 1345678999999999999988776
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-07 Score=71.49 Aligned_cols=94 Identities=21% Similarity=0.270 Sum_probs=69.7
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
+.+|||||||+|. .+..|++. |..|+++|+++..++.+++. .+.++.+|+.+.++. -+.+|+|++..
T Consensus 17 ~~kileIG~GfG~~vA~~L~~~-G~~ViaIDi~~~aV~~a~~~--------~~~~v~dDlf~p~~~~y~~a~liysir-- 85 (134)
T PRK04148 17 NKKIVELGIGFYFKVAKKLKES-GFDVIVIDINEKAVEKAKKL--------GLNAFVDDLFNPNLEIYKNAKLIYSIR-- 85 (134)
T ss_pred CCEEEEEEecCCHHHHHHHHHC-CCEEEEEECCHHHHHHHHHh--------CCeEEECcCCCCCHHHHhcCCEEEEeC--
Confidence 6899999999996 88888865 89999999999988877653 378999999886532 36789988753
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
--++.+..+.++++. -|.-+++..++.
T Consensus 86 -pp~el~~~~~~la~~--~~~~~~i~~l~~ 112 (134)
T PRK04148 86 -PPRDLQPFILELAKK--INVPLIIKPLSG 112 (134)
T ss_pred -CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 223555566666664 356677766543
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.50 E-value=2e-06 Score=78.92 Aligned_cols=121 Identities=21% Similarity=0.194 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
...+.+.++-...+. -.+.+|||+|||.|..+..+.+.+ -.+++++|.|+.|++.++..+..........+..
T Consensus 17 ~~~~vl~El~~r~p~-----f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~ 91 (274)
T PF09243_consen 17 AVYRVLSELRKRLPD-----FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRR 91 (274)
T ss_pred HHHHHHHHHHHhCcC-----CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhh
Confidence 334455555444322 237899999999998776666654 3579999999999999999876432211111111
Q ss_pred cCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 215 GDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
....+. .+-...|+|++.++|..+++ ...+++.+.+.+.+ .|+++|.+
T Consensus 92 ~~~~~~-~~~~~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 92 VLYRDF-LPFPPDDLVIASYVLNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhhccc-ccCCCCcEEEEehhhhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 111111 11223499999999999976 34566666666655 89998854
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=5.2e-07 Score=82.91 Aligned_cols=88 Identities=16% Similarity=0.191 Sum_probs=71.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++++++.+.+.+ +..+||.+||.|..+..+++.. ..+|+|+|.++.+++.+++++.+ ..++.++++|+.
T Consensus 7 ll~Evl~~L~~~p-----g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~ 78 (296)
T PRK00050 7 LLDEVVDALAIKP-----DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFS 78 (296)
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHH
Confidence 5677777776554 7899999999999999999987 37999999999999999988754 368999999998
Q ss_pred CCC--CCC--CCccEEEecccc
Q 016921 219 QQP--FPD--GQFDLVWSMESG 236 (380)
Q Consensus 219 ~~~--~~~--~~fD~V~~~~~l 236 (380)
++. .+. .++|.|++....
T Consensus 79 ~l~~~l~~~~~~vDgIl~DLGv 100 (296)
T PRK00050 79 NLKEVLAEGLGKVDGILLDLGV 100 (296)
T ss_pred HHHHHHHcCCCccCEEEECCCc
Confidence 753 122 279999987554
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.3e-06 Score=83.93 Aligned_cols=106 Identities=17% Similarity=0.208 Sum_probs=84.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEe--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWS-- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~-- 232 (380)
++.+|||+++|.|.=+..+++.. ...|+++|+++.-+...++++...|+ .++.+...|...+. ...+.||.|++
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~-~nv~v~~~D~~~~~~~~~~~fD~ILvDa 191 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGV-SNVALTHFDGRVFGAALPETFDAILLDA 191 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCchhhhhhhchhhcCeEEEcC
Confidence 58999999999999999999877 35899999999999999999999888 47888889987653 22467999994
Q ss_pred --c--cccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 233 --M--ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 --~--~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. +++..-++. .++|..+.+.|||||+|+-++-
T Consensus 192 PCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTC 243 (470)
T PRK11933 192 PCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTC 243 (470)
T ss_pred CCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECC
Confidence 3 222221211 4688899999999999988764
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.7e-06 Score=69.74 Aligned_cols=103 Identities=37% Similarity=0.495 Sum_probs=75.5
Q ss_pred EEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCC-CCccEEEecccc
Q 016921 162 VVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPD-GQFDLVWSMESG 236 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~-~~fD~V~~~~~l 236 (380)
++|+|||+|... .+..... ..++|+|+++.++..++..... .....+.+...|... .++.. ..||++ +....
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~ 128 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLV 128 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEE-eeeee
Confidence 999999999977 3333322 4899999999999985554432 211116888888776 67766 489999 55544
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
.+..+....+.++.+.|+|+|.+++......
T Consensus 129 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 129 LHLLPPAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hhcCCHHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 4443488999999999999999999886543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.3e-06 Score=81.90 Aligned_cols=120 Identities=25% Similarity=0.355 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......++...++++.... +.+|||+=||.|.+++.+|++ ..+|+|+|+++++++.|+++++.+++. |+.|.
T Consensus 274 N~~~~ekl~~~a~~~~~~~~-----~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~-N~~f~ 346 (432)
T COG2265 274 NPAVAEKLYETALEWLELAG-----GERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGID-NVEFI 346 (432)
T ss_pred CHHHHHHHHHHHHHHHhhcC-----CCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEE
Confidence 45566777788888876544 789999999999999999976 789999999999999999999999985 59999
Q ss_pred EcCCCCCCC---CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 214 VGDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 214 ~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+++++... ....+|.|+..=-=.- -...+++.+.+ ++|-.+++++.
T Consensus 347 ~~~ae~~~~~~~~~~~~d~VvvDPPR~G--~~~~~lk~l~~-~~p~~IvYVSC 396 (432)
T COG2265 347 AGDAEEFTPAWWEGYKPDVVVVDPPRAG--ADREVLKQLAK-LKPKRIVYVSC 396 (432)
T ss_pred eCCHHHHhhhccccCCCCEEEECCCCCC--CCHHHHHHHHh-cCCCcEEEEeC
Confidence 999998642 2357899987200000 00244554444 57888888875
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.8e-07 Score=73.56 Aligned_cols=77 Identities=19% Similarity=0.223 Sum_probs=63.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+++|+|||+|.+....+.--...|.|+|++++.++.+++++.+..+ ++.+.++|+.++.+..+.||.++.+--+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNppF 124 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPPF 124 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCCC
Confidence 3889999999999998555442256899999999999999999987665 5789999999887677899999886544
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.2e-06 Score=78.96 Aligned_cols=105 Identities=20% Similarity=0.288 Sum_probs=78.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC---CCCeEEEEcCCCCC-CCCCC-CccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL---ADKVSFQVGDALQQ-PFPDG-QFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~---~~~v~~~~~d~~~~-~~~~~-~fD~V~~ 232 (380)
+.+||=||.|.|..+..+.+.. ..+++++|+++.+++.+++.+..... .++++++.+|+... .-..+ +||+|+.
T Consensus 77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi~ 156 (246)
T PF01564_consen 77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVIIV 156 (246)
T ss_dssp T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEEE
T ss_pred cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEEE
Confidence 8899999999999999998764 47999999999999999998765321 36899999998663 11123 8999997
Q ss_pred ccccCCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...-...+. ...+++.+.+.|+|||.+++..
T Consensus 157 D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 157 DLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp ESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 443211111 2589999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.1e-06 Score=78.51 Aligned_cols=103 Identities=18% Similarity=0.288 Sum_probs=82.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCCC-CCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQP-FPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~~-~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|.++..+++.. ..+++.+|+++..++.+++.+.... . .++++++..|..+.- -..++||+|++.
T Consensus 77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D 156 (282)
T COG0421 77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD 156 (282)
T ss_pred CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence 3699999999999999999976 5899999999999999999885532 2 378999999987752 123489999975
Q ss_pred cccCCC-C----CHHHHHHHHHHhcCCCcEEEEE
Q 016921 234 ESGEHM-P----DKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 234 ~~l~~~-~----~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..=. . + .-..+++.+++.|+++|.++..
T Consensus 157 ~tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 157 STDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 4333 2 1 1268999999999999999987
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.8e-07 Score=79.21 Aligned_cols=96 Identities=21% Similarity=0.310 Sum_probs=73.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
..+.++||+|.|.|..+..++..+ .+|++.++|..|....+++ + .++. ...+..-.+-+||+|.|...+
T Consensus 111 ~~~~~lLDlGAGdGeit~~m~p~f-eevyATElS~tMr~rL~kk----~----ynVl--~~~ew~~t~~k~dli~clNlL 179 (288)
T KOG3987|consen 111 QEPVTLLDLGAGDGEITLRMAPTF-EEVYATELSWTMRDRLKKK----N----YNVL--TEIEWLQTDVKLDLILCLNLL 179 (288)
T ss_pred CCCeeEEeccCCCcchhhhhcchH-HHHHHHHhhHHHHHHHhhc----C----Ccee--eehhhhhcCceeehHHHHHHH
Confidence 346899999999999999998864 5688999999998776542 2 1111 112211123579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCC-CcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAP-AGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~Lkp-gG~l~~~~ 263 (380)
.-.-++-++++.++.+|+| +|++++.-
T Consensus 180 DRc~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 180 DRCFDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred HhhcChHHHHHHHHHHhccCCCcEEEEE
Confidence 8778999999999999999 89888764
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.38 E-value=8.4e-07 Score=76.25 Aligned_cols=105 Identities=18% Similarity=0.132 Sum_probs=78.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (380)
+.+|||+-||+|.+++..+.+...+|+.||.++..+...+++++..+...++.++..|+... .....+||+|++.=
T Consensus 43 g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP 122 (183)
T PF03602_consen 43 GARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP 122 (183)
T ss_dssp T-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE--
T ss_pred CCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC
Confidence 89999999999999999988855699999999999999999999988877799999996542 12468999998752
Q ss_pred ccCCCCC-HHHHHHHHH--HhcCCCcEEEEEec
Q 016921 235 SGEHMPD-KSKFVSELA--RVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~-~~~~l~~~~--r~LkpgG~l~~~~~ 264 (380)
=+.... ...++..+. .+|+++|.+++-..
T Consensus 123 -PY~~~~~~~~~l~~l~~~~~l~~~~~ii~E~~ 154 (183)
T PF03602_consen 123 -PYAKGLYYEELLELLAENNLLNEDGLIIIEHS 154 (183)
T ss_dssp -STTSCHHHHHHHHHHHHTTSEEEEEEEEEEEE
T ss_pred -CcccchHHHHHHHHHHHCCCCCCCEEEEEEec
Confidence 222233 367788777 78999998888653
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.2e-06 Score=78.80 Aligned_cols=106 Identities=19% Similarity=0.150 Sum_probs=91.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+|.+|||.=+|-|.+++.+|......|+++|++|..++..++++..+++...+..+++|+......-+.+|.|++..
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~--- 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL--- 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC---
Confidence 38999999999999999999974334999999999999999999999998789999999999865448899999864
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
..+...++..+.+.+++||.+-..++...
T Consensus 265 -p~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 265 -PKSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred -CCcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 33556788999999999999999886543
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.2e-06 Score=74.39 Aligned_cols=159 Identities=21% Similarity=0.362 Sum_probs=91.2
Q ss_pred hhHHHHHHHHHHHhccchhhHHHhhccccc-----------ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCC
Q 016921 90 AAARELKEGIAEFYDESSSLWEDIWGDHMH-----------HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKR 158 (380)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 158 (380)
..++++...+...+......++..|...+. |.|| .-..++++.=+..+.... ...
T Consensus 55 ~~i~~~~~~L~~~~~~ae~~LE~~~A~~l~~~~~p~~~L~~FpYy------------~nY~~L~~lE~~~l~~~~--~~~ 120 (276)
T PF03059_consen 55 PEIQSIRPSLRRLCSEAEGLLESHWAKRLLASDNPLDHLESFPYY------------PNYEKLVRLEYAALRIHA--GDP 120 (276)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SSHHHHHHTSTTH------------HHHHHHHHHHHH-HTT----TT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHhcCCcH------------HHHHHHHHHHHHHHhhcC--Ccc
Confidence 667777777777776655555554443221 2222 222333333333333222 012
Q ss_pred CCEEEEECCCcChH-HHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGS-SRYLAKKF--GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~-~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
+.+|+=||||.=-+ ++.+++.+ +..|+++|+++...+.+++... ..++..++.|+.+|..+.+..-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 56999999996554 45566554 5789999999999999999887 45677889999999987654447899998765
Q ss_pred ccCCC-CCHHHHHHHHHHhcCCCcEEEEE
Q 016921 235 SGEHM-PDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ~l~~~-~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...-- .++.+++..+.+.++||..+++=
T Consensus 201 lVg~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVGMDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcccccchHHHHHHHHHhhCCCCcEEEEe
Confidence 44322 37899999999999999988885
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=75.28 Aligned_cols=97 Identities=13% Similarity=0.045 Sum_probs=75.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--C-CCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--G-LADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~-~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
.+.+||=||.|.|..++.++++ ..+|+.+|+++.+++.+++.+... + -.+|++++.. +.+ -..++||+|++-.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~--~~~~~fDVIIvDs 147 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD--LDIKKYDLIICLQ 147 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh--ccCCcCCEEEEcC
Confidence 3799999999999999999997 569999999999999999965432 1 1357777652 211 1237899999764
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ....+++.+++.|+|||.++...
T Consensus 148 ~-----~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 148 E-----PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred C-----CChHHHHHHHHhcCCCcEEEECC
Confidence 3 33678899999999999999854
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.4e-06 Score=72.39 Aligned_cols=123 Identities=20% Similarity=0.256 Sum_probs=88.2
Q ss_pred EEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-CccEEEeccccCCC
Q 016921 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDG-QFDLVWSMESGEHM 239 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~l~~~ 239 (380)
|.||||-.|.+...|.+.. ..+++++|+++.-++.|++.+...++.+++++..+|-.+. ++.+ ..|.|+..++=..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~-l~~~e~~d~ivIAGMGG~- 78 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEV-LKPGEDVDTIVIAGMGGE- 78 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE-HH-
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccc-cCCCCCCCEEEEecCCHH-
Confidence 6899999999999999985 3479999999999999999999999999999999996552 2333 4899988765432
Q ss_pred CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 240 PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 240 ~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
-...++.+....++....|++.-. .....++++|.+.||.+++..-.
T Consensus 79 -lI~~ILe~~~~~~~~~~~lILqP~--------------------------------~~~~~LR~~L~~~gf~I~~E~lv 125 (205)
T PF04816_consen 79 -LIIEILEAGPEKLSSAKRLILQPN--------------------------------THAYELRRWLYENGFEIIDEDLV 125 (205)
T ss_dssp -HHHHHHHHTGGGGTT--EEEEEES--------------------------------S-HHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHhhHHHhccCCeEEEeCC--------------------------------CChHHHHHHHHHCCCEEEEeEEE
Confidence 235666666667766667777531 24678999999999999886543
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.8e-07 Score=74.23 Aligned_cols=137 Identities=9% Similarity=0.136 Sum_probs=96.9
Q ss_pred CCEEEEECCC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCC--CCCCCCccEEEe
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQ--PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~--~~~~~~fD~V~~ 232 (380)
+.+|||+|.| +|.-++.+|... ...|...|-+++.+...++....+... .++.....+...- ..+..+||+|++
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 7889999999 666667777655 678999999999988887766443211 1222222222111 123468999999
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
...+..-.....+++.+...|+|.|..++.. |. +-.+.+.+.+.....||.
T Consensus 110 ADClFfdE~h~sLvdtIk~lL~p~g~Al~fs-------PR----------------------Rg~sL~kF~de~~~~gf~ 160 (201)
T KOG3201|consen 110 ADCLFFDEHHESLVDTIKSLLRPSGRALLFS-------PR----------------------RGQSLQKFLDEVGTVGFT 160 (201)
T ss_pred ccchhHHHHHHHHHHHHHHHhCcccceeEec-------Cc----------------------ccchHHHHHHHHHhceeE
Confidence 9888665556789999999999999977754 11 124677788889999999
Q ss_pred EEEEEecCCCcC
Q 016921 313 DIKAEDWSQNVA 324 (380)
Q Consensus 313 ~v~~~~~~~~~~ 324 (380)
+.-.+++...++
T Consensus 161 v~l~enyde~iw 172 (201)
T KOG3201|consen 161 VCLEENYDEAIW 172 (201)
T ss_pred EEecccHhHHHH
Confidence 988887776653
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1e-06 Score=73.52 Aligned_cols=71 Identities=28% Similarity=0.517 Sum_probs=55.7
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCC-ccEEEe
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQ-FDLVWS 232 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~-fD~V~~ 232 (380)
.|+|+.||.|..++.+|+. ..+|+++|+++..++.|+.++...|+.++|.|+++|+.+.. +.... ||+|++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFl 75 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFL 75 (163)
T ss_dssp EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE
T ss_pred EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEE
Confidence 6999999999999999997 67999999999999999999999999889999999987752 22222 799987
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.9e-05 Score=73.64 Aligned_cols=117 Identities=12% Similarity=0.105 Sum_probs=83.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSF- 212 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~- 212 (380)
++....+...++ ++..|+|+|||.|.=+..|.+.+ ...++++|+|.++++.+.+++..... +.+.+
T Consensus 64 ~~~~~~Ia~~i~-------~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~ 135 (319)
T TIGR03439 64 KKHSSDIAASIP-------SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCA 135 (319)
T ss_pred HHHHHHHHHhcC-------CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEE
Confidence 444445555442 36789999999999777666655 36799999999999999999874444 34555
Q ss_pred -EEcCCCCC----CC--CCCCccEEEec-cccCCCCCH--HHHHHHHHH-hcCCCcEEEEEe
Q 016921 213 -QVGDALQQ----PF--PDGQFDLVWSM-ESGEHMPDK--SKFVSELAR-VTAPAGTIIIVT 263 (380)
Q Consensus 213 -~~~d~~~~----~~--~~~~fD~V~~~-~~l~~~~~~--~~~l~~~~r-~LkpgG~l~~~~ 263 (380)
+++|+.+. +- ......+|+.. .++.+++.. ..+++++++ .|+|||.|++..
T Consensus 136 ~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 136 GLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred EEEecHHHHHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 78887653 21 12345666654 488888543 578999999 999999998864
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.5e-06 Score=70.57 Aligned_cols=110 Identities=24% Similarity=0.259 Sum_probs=78.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
..+.++.+...+- .++.+|+|||+-.|.|+..+++..+ ..|+|+|+.|.- ..++|.++++|+
T Consensus 31 ~KL~el~~k~~i~----~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~------------~~~~V~~iq~d~ 94 (205)
T COG0293 31 YKLLELNEKFKLF----KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK------------PIPGVIFLQGDI 94 (205)
T ss_pred HHHHHHHHhcCee----cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc------------cCCCceEEeeec
Confidence 3455555555432 2489999999999999999999874 349999998742 224699999999
Q ss_pred CCCC--------CCCCCccEEEecccc--------CCCCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 218 LQQP--------FPDGQFDLVWSMESG--------EHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 218 ~~~~--------~~~~~fD~V~~~~~l--------~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+..+ +....+|+|++-.+- .|... -..++.-+..+|+|||.+++-.+-
T Consensus 95 ~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fq 161 (205)
T COG0293 95 TDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQ 161 (205)
T ss_pred cCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEe
Confidence 8753 345568999964332 11110 135677788899999999998753
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.9e-06 Score=73.29 Aligned_cols=117 Identities=25% Similarity=0.310 Sum_probs=72.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHH-------cCC-CCCe
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAA-------RGL-ADKV 210 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~-------~~~-~~~v 210 (380)
..+..+++.+.+.+ +...+|||||.|......+-..+++ ++||++.+...+.|+..... .|. ..++
T Consensus 29 ~~~~~il~~~~l~~-----~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v 103 (205)
T PF08123_consen 29 EFVSKILDELNLTP-----DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKV 103 (205)
T ss_dssp HHHHHHHHHTT--T-----T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EE
T ss_pred HHHHHHHHHhCCCC-----CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 35666777777665 8999999999999998887766655 99999999988777654322 232 3568
Q ss_pred EEEEcCCCCCCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 211 SFQVGDALQQPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 211 ~~~~~d~~~~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.+..+|+.+.++.. ..-|+|+++.... -++....+.+....||+|.+++..
T Consensus 104 ~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~ 157 (205)
T PF08123_consen 104 ELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIIST 157 (205)
T ss_dssp EEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEES
T ss_pred eeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEEC
Confidence 88899987643111 3468999877643 235566778888889998887653
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.1e-05 Score=76.99 Aligned_cols=99 Identities=12% Similarity=0.132 Sum_probs=82.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (380)
+.+|||+-||+|..++.++.+. ..+|+++|+++..++.++++++.+++. ++++.+.|+..+- .....||+|...-
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP- 122 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP- 122 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-
Confidence 4689999999999999999874 368999999999999999999887763 6889999987652 1236799998743
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+ ..+..++..+.+.+++||.|.++
T Consensus 123 f---Gs~~~fld~al~~~~~~glL~vT 146 (374)
T TIGR00308 123 F---GTPAPFVDSAIQASAERGLLLVT 146 (374)
T ss_pred C---CCcHHHHHHHHHhcccCCEEEEE
Confidence 2 35567999999999999999997
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=2e-05 Score=81.73 Aligned_cols=120 Identities=22% Similarity=0.212 Sum_probs=86.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------------------------------------
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------------------------------- 180 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------------------------------- 180 (380)
.+...++...+... ++..++|..||+|.+.+..+...
T Consensus 176 tlAaa~l~~a~w~~----~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~ 251 (702)
T PRK11783 176 NLAAAILLRSGWPQ----EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAG 251 (702)
T ss_pred HHHHHHHHHcCCCC----CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhc
Confidence 35556666655421 37899999999999998876531
Q ss_pred ----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCCccEEEeccccC-CCC---CHHHHHHHHH
Q 016921 181 ----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSMESGE-HMP---DKSKFVSELA 250 (380)
Q Consensus 181 ----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~~l~-~~~---~~~~~l~~~~ 250 (380)
..+++|+|+++.+++.|++++...|+...+.|.++|+.+++.+ .++||+|+++=-.. -+. +...+.+.+.
T Consensus 252 ~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg 331 (702)
T PRK11783 252 LAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLG 331 (702)
T ss_pred ccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHH
Confidence 1269999999999999999999999988899999999887543 35799999873221 111 2334444444
Q ss_pred HhcC---CCcEEEEEe
Q 016921 251 RVTA---PAGTIIIVT 263 (380)
Q Consensus 251 r~Lk---pgG~l~~~~ 263 (380)
+.|| +|+.+++..
T Consensus 332 ~~lk~~~~g~~~~llt 347 (702)
T PRK11783 332 RRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHHHhCCCCeEEEEe
Confidence 4444 888887755
|
|
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.5e-07 Score=76.73 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=70.4
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 141 ~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+.++++... +.. .++.+|||+||++|.|+..+.++. ...|+|+|+.+.. . ..++.++++|.
T Consensus 8 KL~ei~~~~~~~~~---~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~-----------~-~~~~~~i~~d~ 72 (181)
T PF01728_consen 8 KLYEIDEKFKIFKP---GKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMD-----------P-LQNVSFIQGDI 72 (181)
T ss_dssp HHHHHHHTTSSS-T---TTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTG-----------S--TTEEBTTGGG
T ss_pred HHHHHHHHCCCCCc---ccccEEEEcCCcccceeeeeeecccccceEEEEeccccc-----------c-ccceeeeeccc
Confidence 4455666555 322 236899999999999999999985 4899999998751 1 13567777776
Q ss_pred CCCC--------C--CCCCccEEEeccccCCCCC----H-------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 218 LQQP--------F--PDGQFDLVWSMESGEHMPD----K-------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 218 ~~~~--------~--~~~~fD~V~~~~~l~~~~~----~-------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+.. + ..+.||+|++..+...-.+ . ...+.-+...|+|||.+++-.+.
T Consensus 73 ~~~~~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~ 141 (181)
T PF01728_consen 73 TNPENIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFK 141 (181)
T ss_dssp EEEEHSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS
T ss_pred chhhHHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc
Confidence 5421 1 1268999999774433322 1 23555667889999999987653
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.8e-06 Score=77.83 Aligned_cols=79 Identities=30% Similarity=0.452 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
.......+++.+++.+.... + +|||+-||.|.+++.+|+. ..+|+|+|+++.+++.|++++..+++ .|++|+
T Consensus 178 N~~~~~~l~~~~~~~l~~~~-----~-~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~ 249 (352)
T PF05958_consen 178 NPEQNEKLYEQALEWLDLSK-----G-DVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNGI-DNVEFI 249 (352)
T ss_dssp BHHHHHHHHHHHHHHCTT-T-----T-EEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT---SEEEE
T ss_pred cHHHHHHHHHHHHHHhhcCC-----C-cEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEE
Confidence 45666778888888887543 4 8999999999999999987 67999999999999999999999888 589999
Q ss_pred EcCCCCC
Q 016921 214 VGDALQQ 220 (380)
Q Consensus 214 ~~d~~~~ 220 (380)
.++++++
T Consensus 250 ~~~~~~~ 256 (352)
T PF05958_consen 250 RGDAEDF 256 (352)
T ss_dssp E--SHHC
T ss_pred Eeeccch
Confidence 9887654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-05 Score=63.47 Aligned_cols=98 Identities=26% Similarity=0.358 Sum_probs=70.7
Q ss_pred CCCEEEEECCCcChHHHHHHH-----HcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCCCCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAK-----KFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQPFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~-----~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~~~~~~fD~V 230 (380)
+..+|+|+|||.|.++..++. ..+.+|+|+|.++...+.++++....+ +..++.+..++..+.. .....+++
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 103 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES-SSDPPDIL 103 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc-ccCCCeEE
Confidence 478999999999999999998 557899999999999999999988766 4456777777665432 24556777
Q ss_pred EeccccCCCCCH-HHHHHHHHHhcCCCcEEEEE
Q 016921 231 WSMESGEHMPDK-SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 231 ~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~~~ 262 (380)
+..++- .+. ..+++.+.+ ++-..++.
T Consensus 104 vgLHaC---G~Ls~~~l~~~~~---~~~~~l~~ 130 (141)
T PF13679_consen 104 VGLHAC---GDLSDRALRLFIR---PNARFLVL 130 (141)
T ss_pred EEeecc---cchHHHHHHHHHH---cCCCEEEE
Confidence 654443 443 345555555 55554443
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=66.37 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=82.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCC-CCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFP-DGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~~fD~V~~~~ 234 (380)
.+.++||+=+|+|.++...+.+....++.||.+.......+++++..++..++.++..|+... ... .++||+|+..=
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 489999999999999999999866799999999999999999999888778899999998843 112 23599999853
Q ss_pred ccC-CCCCHHHHHHH--HHHhcCCCcEEEEEe
Q 016921 235 SGE-HMPDKSKFVSE--LARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~-~~~~~~~~l~~--~~r~LkpgG~l~~~~ 263 (380)
-.+ .+-+....+.. -...|+|+|.+++-.
T Consensus 123 Py~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 332 11222333333 457799999999865
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=74.26 Aligned_cols=105 Identities=20% Similarity=0.318 Sum_probs=72.5
Q ss_pred CCEEEEECCCcChHHHHHHHH--------cCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCCCC--CCCc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK--------FGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQPFP--DGQF 227 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~~~--~~~f 227 (380)
+.+|+|-+||+|.+...+.+. ....++|+|+++.+...++.++.-.+.... ..+..+|....+.. ...|
T Consensus 47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 126 (311)
T PF02384_consen 47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKNQKF 126 (311)
T ss_dssp TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST--E
T ss_pred cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccccccccccccccccccc
Confidence 778999999999999888763 257899999999999999877655554322 46888887655432 4789
Q ss_pred cEEEeccccCCC------------------C--C-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHM------------------P--D-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~------------------~--~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+++--+... + . ...++..+.+.|++||++.+..
T Consensus 127 D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 127 DVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp EEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 999985211110 0 0 1358899999999999987765
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.3e-05 Score=67.62 Aligned_cols=102 Identities=23% Similarity=0.270 Sum_probs=79.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
-.+++|||+|+|+|..++..+......|+..|+.|...+..+-+++.+|+ .+.+...|... .+..||+|+...++
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv--~i~~~~~d~~g---~~~~~Dl~LagDlf 152 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV--SILFTHADLIG---SPPAFDLLLAGDLF 152 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc--eeEEeeccccC---CCcceeEEEeecee
Confidence 35899999999999999998887556899999999988888888888775 58888888765 46789999999988
Q ss_pred CCCCCHHHHHHHHHHhcCCCc-EEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAG-TIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG-~l~~~~~ 264 (380)
+.-+.-.+++. +.+.|+..| .+++.+.
T Consensus 153 y~~~~a~~l~~-~~~~l~~~g~~vlvgdp 180 (218)
T COG3897 153 YNHTEADRLIP-WKDRLAEAGAAVLVGDP 180 (218)
T ss_pred cCchHHHHHHH-HHHHHHhCCCEEEEeCC
Confidence 77656677777 555555444 5555553
|
|
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00035 Score=63.38 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD----- 208 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~----- 208 (380)
.+.....+++++....+... ......+||--|||.|.++..++.. |..+-|-+.|--|+-...=.+.....+.
T Consensus 127 Rd~~ykpii~~l~~lfp~~~-~~r~ki~iLvPGaGlGRLa~dla~~-G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IY 204 (369)
T KOG2798|consen 127 RDQLYKPIIEELNSLFPSRG-KERTKIRILVPGAGLGRLAYDLACL-GFKCQGNEFSYFMLICSSFILNYCKQENQFTIY 204 (369)
T ss_pred hhhhhhhHHHHHHhhCCCcc-ccccCceEEecCCCchhHHHHHHHh-cccccccHHHHHHHHHHHHHHHhhccCCcEEEE
Confidence 34445566777666554322 2234678999999999999999987 7777777877777633222221000000
Q ss_pred ----------------------------------CeEEEEcCCCCC---CCCCCCccEEEeccccCCCCCHHHHHHHHHH
Q 016921 209 ----------------------------------KVSFQVGDALQQ---PFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (380)
Q Consensus 209 ----------------------------------~v~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (380)
..+...+|+.+. +-..+.||+|+.++.+....+.-+.++.+..
T Consensus 205 PfIh~~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~ 284 (369)
T KOG2798|consen 205 PFIHQYSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYK 284 (369)
T ss_pred eeeeccccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHH
Confidence 111122333321 1112469999998877776788899999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
+|||||+.+-..+-.-.+.+.... .....+. ++.+++..+....||++++.+.+....
T Consensus 285 iLk~GGvWiNlGPLlYHF~d~~g~------------~~~~siE--ls~edl~~v~~~~GF~~~ke~~Idt~Y 342 (369)
T KOG2798|consen 285 ILKPGGVWINLGPLLYHFEDTHGV------------ENEMSIE--LSLEDLKRVASHRGFEVEKERGIDTTY 342 (369)
T ss_pred hccCCcEEEeccceeeeccCCCCC------------ccccccc--ccHHHHHHHHHhcCcEEEEeeeeeccc
Confidence 999999987655322221111110 0011112 578999999999999999877554433
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.7e-05 Score=66.67 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
.|...+...+.+.+. . ++.+||+||-|-|.....+.++-...=..|+..|..++..+...-. -..+|.+..+
T Consensus 85 ~WEtpiMha~A~ai~-t-----kggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~--ek~nViil~g 156 (271)
T KOG1709|consen 85 RWETPIMHALAEAIS-T-----KGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWR--EKENVIILEG 156 (271)
T ss_pred hhhhHHHHHHHHHHh-h-----CCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccc--cccceEEEec
Confidence 344445555544443 2 3899999999999999888776545566789999988776653311 1256777777
Q ss_pred CCCCC--CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-.++. .++++.||-|+-...-++..|.-.+.+.+.++|||+|++-...
T Consensus 157 ~WeDvl~~L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 157 RWEDVLNTLPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred chHhhhccccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEEEec
Confidence 66653 3678999999976665777888889999999999999887654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.2e-05 Score=69.04 Aligned_cols=74 Identities=28% Similarity=0.475 Sum_probs=62.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 233 (380)
...|+|.-||.|+.+...+.+ ++.|++||++|.-++.|+.+++-.|++++|.|+++|+.++ .+.-..+|+|+.+
T Consensus 95 ~~~iidaf~g~gGntiqfa~~-~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 95 AEVIVDAFCGVGGNTIQFALQ-GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred cchhhhhhhcCCchHHHHHHh-CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 567999999999999988887 8999999999999999999999999999999999998775 2333345566554
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.02 E-value=4.7e-05 Score=64.19 Aligned_cols=155 Identities=14% Similarity=0.118 Sum_probs=91.2
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHH----HHHHH-HHHHcCCCCCeEEEEcCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQA----QRANA-LAAARGLADKVSFQVGDA 217 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~----~~a~~-~~~~~~~~~~v~~~~~d~ 217 (380)
+|...++++ +.+|+|+-.|.|.|+.-++...+ ..|+++=..+... ...+. .+.......|++.+-.+.
T Consensus 40 ~L~FaGlkp-----g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~ 114 (238)
T COG4798 40 VLAFAGLKP-----GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPL 114 (238)
T ss_pred eeEEeccCC-----CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcc
Confidence 345566665 99999999999999999988763 3566554433210 10111 111111223455555454
Q ss_pred CCCCCCCCCccEEEeccccC-------CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc
Q 016921 218 LQQPFPDGQFDLVWSMESGE-------HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~-------~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (380)
..+. +.+..|++.....-| |-....++.+.+++.|||||.+++.+........... ...
T Consensus 115 ~A~~-~pq~~d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~d------------t~~- 180 (238)
T COG4798 115 VALG-APQKLDLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSD------------TIT- 180 (238)
T ss_pred cccC-CCCcccccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhh------------hhh-
Confidence 4444 345556555422221 1223578999999999999999998854322111100 000
Q ss_pred cCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
....+...+....+.+||...-...+..
T Consensus 181 ---~~ri~~a~V~a~veaaGFkl~aeS~ila 208 (238)
T COG4798 181 ---LHRIDPAVVIAEVEAAGFKLEAESEILA 208 (238)
T ss_pred ---hcccChHHHHHHHHhhcceeeeeehhhc
Confidence 0125678899999999999887655543
|
|
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=70.52 Aligned_cols=104 Identities=22% Similarity=0.252 Sum_probs=75.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+++.+++.+.+.. +..|||||+|+|.++..|++. +.+++++|+++.+.+..+++.. ..++++++.+|+.+
T Consensus 17 ~~~~~Iv~~~~~~~-----~~~VlEiGpG~G~lT~~L~~~-~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 17 NIADKIVDALDLSE-----GDTVLEIGPGPGALTRELLKR-GKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHTCGT-----TSEEEEESSTTSCCHHHHHHH-SSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTT
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCCccchhhHhcc-cCcceeecCcHhHHHHHHHHhh---hcccceeeecchhc
Confidence 46677777776654 899999999999999999998 6999999999999998888664 23689999999998
Q ss_pred CCCCC---CCccEEEeccccCCCCCHHHHHHHHHHhcCC
Q 016921 220 QPFPD---GQFDLVWSMESGEHMPDKSKFVSELARVTAP 255 (380)
Q Consensus 220 ~~~~~---~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkp 255 (380)
+..+. +....|+++-- +++ ...++.++...-+.
T Consensus 88 ~~~~~~~~~~~~~vv~NlP-y~i--s~~il~~ll~~~~~ 123 (262)
T PF00398_consen 88 WDLYDLLKNQPLLVVGNLP-YNI--SSPILRKLLELYRF 123 (262)
T ss_dssp SCGGGHCSSSEEEEEEEET-GTG--HHHHHHHHHHHGGG
T ss_pred cccHHhhcCCceEEEEEec-ccc--hHHHHHHHhhcccc
Confidence 86543 34445555422 222 34566666664444
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.1e-05 Score=71.74 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=66.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.++.++|||||++|.|+..+.++ |..|++||..+-. .. +. -.++|.....|......+.+.+|.|+|..+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r-G~~V~AVD~g~l~-~~----L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv- 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR-GMFVTAVDNGPMA-QS----LM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV- 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc-CCEEEEEechhcC-Hh----hh---CCCCEEEEeccCcccCCCCCCCCEEEEecc-
Confidence 46899999999999999999997 8899999966521 11 11 125799898887665323678999998644
Q ss_pred CCCCCHHHHHHHHHHhcCCC
Q 016921 237 EHMPDKSKFVSELARVTAPA 256 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~Lkpg 256 (380)
..|..+.+-+.+.|..|
T Consensus 280 ---e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---cCHHHHHHHHHHHHhcC
Confidence 36778888888888776
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00015 Score=69.11 Aligned_cols=107 Identities=22% Similarity=0.330 Sum_probs=83.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CC-CCCccEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FP-DGQFDLV 230 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~-~~~fD~V 230 (380)
.++.+|||+.++.|.=+..+++.. +..|+++|.++.-+...+.+++..|+. ++.....|...++ .+ .++||.|
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~-nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVR-NVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCC-ceEEEecccccccccccccCcCcEE
Confidence 459999999999999888888876 356799999999999999999999985 5888888876553 22 2369999
Q ss_pred Ee------ccccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WS------MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~------~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++ .++++-=++. .++|..+.+.|||||.|+.++-
T Consensus 234 LlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 234 LLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 96 2333211221 3588899999999999999874
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.4e-06 Score=68.03 Aligned_cols=99 Identities=24% Similarity=0.383 Sum_probs=44.9
Q ss_pred EEECCCcChHHHHHHHHc--C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEecccc
Q 016921 163 VDVGCGIGGSSRYLAKKF--G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (380)
Q Consensus 163 LDiGcGtG~~~~~l~~~~--~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (380)
||||+..|..+..+++.. . .+++++|+.+. .+.+++.+++.++..+++++.++..+. .++.++||+|+.-. -
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~ 78 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-D 78 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-C
Confidence 699999999998888765 2 37999999995 333444444456667899999998653 23357899998754 2
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|..+.....++.+.+.|+|||.+++.+
T Consensus 79 H~~~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 79 HSYEAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --HHHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred CCHHHHHHHHHHHHHHcCCCeEEEEeC
Confidence 222345677888999999999999865
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0011 Score=63.12 Aligned_cols=163 Identities=17% Similarity=0.224 Sum_probs=91.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHH---------cC---CCCCe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAA---------RG---LADKV 210 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----------------~~~v~giD~s~~~~~~a~~~~~~---------~~---~~~~v 210 (380)
..+|+|+|||+|.+++.+.... ..+|..-|+-.+-....=+.+.. .. ...+.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 6789999999998876654321 13566666543221111111100 00 00011
Q ss_pred EEEE---cCCCCCCCCCCCccEEEeccccCCCCC--------------------------------------HHHHHHHH
Q 016921 211 SFQV---GDALQQPFPDGQFDLVWSMESGEHMPD--------------------------------------KSKFVSEL 249 (380)
Q Consensus 211 ~~~~---~d~~~~~~~~~~fD~V~~~~~l~~~~~--------------------------------------~~~~l~~~ 249 (380)
-|+. +.+-.--||.++.+++++.+++||+.. ...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 222222478999999999999999842 11234444
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCccc--cchH---HHHHHHH----------HhhccCCCC-CCCHHHHHHHHHhCC-Cc
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEES--LQPW---EQELLKK----------ICDAYYLPA-WCSTADYVKLLQSLS-LE 312 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~~--~~~~---~~~~~~~----------~~~~~~~~~-~~~~~~~~~ll~~aG-f~ 312 (380)
++-|.|||++++...+.....+.... ...| ....+.. -.+.+.+|. .++.+|+++.+++.| |+
T Consensus 224 a~ELvpGG~mvl~~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~eGlI~eek~dsFniP~Y~ps~eEv~~~Ie~~gsF~ 303 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQEGLVTSEKRDSFNIPVYAPSLQDFKEVVEANGSFA 303 (386)
T ss_pred HHHhccCcEEEEEEecCCCCCcccCCchhHHHHHHHHHHHHHHHHcCCCCHHHHhcccCcccCCCHHHHHHHHhhcCCEE
Confidence 56789999999998776543332221 1111 1122222 122334442 468999999999888 77
Q ss_pred EEEEEecCC
Q 016921 313 DIKAEDWSQ 321 (380)
Q Consensus 313 ~v~~~~~~~ 321 (380)
+..++.+..
T Consensus 304 I~~le~~~~ 312 (386)
T PLN02668 304 IDKLEVFKG 312 (386)
T ss_pred eeeeEEeec
Confidence 776665543
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.9e-05 Score=70.11 Aligned_cols=118 Identities=24% Similarity=0.266 Sum_probs=86.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC---------------------------------C----
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG---------------------------------A---- 182 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~---------------------------------~---- 182 (380)
.+...++...+-.+ +..++|-=||+|.+++..|.... +
T Consensus 178 tLAaAil~lagw~~-----~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~ 252 (381)
T COG0116 178 TLAAAILLLAGWKP-----DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGK 252 (381)
T ss_pred HHHHHHHHHcCCCC-----CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcC
Confidence 35556666666554 67899999999999998886531 0
Q ss_pred ---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc--ccCCCCC---HH----HHHHHHH
Q 016921 183 ---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--SGEHMPD---KS----KFVSELA 250 (380)
Q Consensus 183 ---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--~l~~~~~---~~----~~l~~~~ 250 (380)
.++|+|+++.+++.|+.++...|+.+-|+|.++|+..+.-+-+.+|+|+++- ... +.+ .. .+.+.+.
T Consensus 253 ~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk 331 (381)
T COG0116 253 ELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLK 331 (381)
T ss_pred ccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHH
Confidence 3779999999999999999999999999999999999864437899999862 221 222 22 2334455
Q ss_pred HhcCCCcEEEEEe
Q 016921 251 RVTAPAGTIIIVT 263 (380)
Q Consensus 251 r~LkpgG~l~~~~ 263 (380)
+.++--+..+++.
T Consensus 332 ~~~~~ws~~v~tt 344 (381)
T COG0116 332 RLLAGWSRYVFTT 344 (381)
T ss_pred HHhcCCceEEEEc
Confidence 6666666666654
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.94 E-value=4.1e-05 Score=64.11 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=79.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc--c
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~--l 236 (380)
...+.|+|+|+|.++...++. ..+|++++.+|...+.|.+++.-.|. .+++++.+|+.+..| +..|+|+|-.. .
T Consensus 33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~-~n~evv~gDA~~y~f--e~ADvvicEmlDTa 108 (252)
T COG4076 33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGD-VNWEVVVGDARDYDF--ENADVVICEMLDTA 108 (252)
T ss_pred hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCC-cceEEEecccccccc--cccceeHHHHhhHH
Confidence 467999999999999888876 78999999999999999988755555 689999999999887 56798887321 1
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
--......+++.+...||-.+.++=..
T Consensus 109 Li~E~qVpV~n~vleFLr~d~tiiPq~ 135 (252)
T COG4076 109 LIEEKQVPVINAVLEFLRYDPTIIPQE 135 (252)
T ss_pred hhcccccHHHHHHHHHhhcCCccccHH
Confidence 111233568888888999998877544
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00022 Score=65.88 Aligned_cols=105 Identities=23% Similarity=0.223 Sum_probs=77.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH--HHc-C---CCCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA--AAR-G---LADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~--~~~-~---~~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
..+||-+|.|.|.-+..+.+.- -.+++-+|++|.|++.++... .+. + -.++++++..|+.++ .-..+.||.|
T Consensus 290 a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~v 369 (508)
T COG4262 290 ARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVV 369 (508)
T ss_pred cceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEE
Confidence 6789999999999999998865 479999999999999998432 221 1 136899999998875 2234689999
Q ss_pred EeccccCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+...-=..-+. ..++..-+.+.|+++|.+++.-
T Consensus 370 IVDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 370 IVDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred EEeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 87431111111 1468888999999999999864
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00024 Score=71.64 Aligned_cols=74 Identities=20% Similarity=0.138 Sum_probs=54.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG---------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~ 224 (380)
..+|||.|||+|.+...+++... ..++|+|+++..+..++.++...+. ..+.+...|..... -..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~-~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFAL-LEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCC-CCceeeeccccccccccccccc
Confidence 57999999999999998887651 4789999999999999988866541 13455555533211 112
Q ss_pred CCccEEEec
Q 016921 225 GQFDLVWSM 233 (380)
Q Consensus 225 ~~fD~V~~~ 233 (380)
+.||+|+++
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 579999985
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00064 Score=59.21 Aligned_cols=107 Identities=16% Similarity=0.183 Sum_probs=73.6
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCC
Q 016921 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQ 226 (380)
Q Consensus 152 ~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~ 226 (380)
...+..++.+||-+|..+|.....+++-. ...|++++.|+......-..+++. +|+--+..|+.... .--+.
T Consensus 67 ~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~ 143 (229)
T PF01269_consen 67 ENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEM 143 (229)
T ss_dssp S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--
T ss_pred cccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhccccc
Confidence 33444569999999999999999999876 468999999997655544444443 58988999998742 11258
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|++.-+ +-....-++.++...||+||.+++.-
T Consensus 144 VDvI~~DVa--Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 144 VDVIFQDVA--QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp EEEEEEE-S--STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccEEEecCC--ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999987533 11233456778889999999999875
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00042 Score=63.65 Aligned_cols=102 Identities=15% Similarity=0.172 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH-HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS-SRYLAKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVS 211 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~-~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~ 211 (380)
.|.-....+..++...... .+...++||||||.... .+..++.++.+++|.|+++..++.|++.+..+ ++.++|+
T Consensus 81 ~R~nYi~~i~DlL~~~~~~---~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~ 157 (299)
T PF05971_consen 81 NRLNYIHWIADLLASSNPG---IPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIE 157 (299)
T ss_dssp HHHHHHHHHHHHHT--TCG---CS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEE
T ss_pred hhHHHHHHHHHHhhccccc---cccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceE
Confidence 4455555666666543221 12367899999997644 44445555999999999999999999999998 8889999
Q ss_pred EEEcCCCC-----CCCCCCCccEEEeccccCC
Q 016921 212 FQVGDALQ-----QPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 212 ~~~~d~~~-----~~~~~~~fD~V~~~~~l~~ 238 (380)
++...-.. +..+++.||+..|+=-++.
T Consensus 158 l~~~~~~~~i~~~i~~~~e~~dftmCNPPFy~ 189 (299)
T PF05971_consen 158 LRKQKNPDNIFDGIIQPNERFDFTMCNPPFYS 189 (299)
T ss_dssp EEE--ST-SSTTTSTT--S-EEEEEE-----S
T ss_pred EEEcCCccccchhhhcccceeeEEecCCcccc
Confidence 98764322 1123468999999765554
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0015 Score=56.73 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=95.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.++.||||-.+.+..++.+.. ...++..|+++.-++.|.+.+++.++.++++...+|....--++..+|.|+..++-.
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGMGG 96 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGMGG 96 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCCcH
Confidence 5669999999999999999876 568999999999999999999999999999999999854322345899998876533
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
. -...++.+-.+.|+.=-++++.- -.....++++|.+.+|+++...
T Consensus 97 ~--lI~~ILee~~~~l~~~~rlILQP--------------------------------n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 97 T--LIREILEEGKEKLKGVERLILQP--------------------------------NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred H--HHHHHHHHhhhhhcCcceEEECC--------------------------------CCCHHHHHHHHHhCCceeeeee
Confidence 1 23455666666665334555531 1235788889999999887654
Q ss_pred ec
Q 016921 318 DW 319 (380)
Q Consensus 318 ~~ 319 (380)
-+
T Consensus 143 il 144 (226)
T COG2384 143 IL 144 (226)
T ss_pred ee
Confidence 33
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00018 Score=69.30 Aligned_cols=102 Identities=27% Similarity=0.312 Sum_probs=84.5
Q ss_pred EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP 240 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~ 240 (380)
++|-+|||.-.+...+-+.....|+-+|+|+..++....+.... ..-..+...|+..+.|++++||+|+..+.+.++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 89999999998888887764568999999999988877665422 2468899999999999999999999999998872
Q ss_pred -C---------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 241 -D---------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 241 -~---------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+ ....+.++.|+|++||+.+....
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 2 13467899999999999888776
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0003 Score=64.98 Aligned_cols=89 Identities=13% Similarity=0.130 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++++++.+.+.+ +..++|.-+|.|..+..+++.. ..+|+|+|.++.+++.+++++... ..++.++++++.+
T Consensus 8 ll~Evl~~L~~~~-----ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~ 80 (305)
T TIGR00006 8 LLDEVVEGLNIKP-----DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFAN 80 (305)
T ss_pred hHHHHHHhcCcCC-----CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHH
Confidence 5667777776544 8899999999999999999886 589999999999999999988654 3689999999887
Q ss_pred CC-----CCCCCccEEEecccc
Q 016921 220 QP-----FPDGQFDLVWSMESG 236 (380)
Q Consensus 220 ~~-----~~~~~fD~V~~~~~l 236 (380)
+. ...+++|.|+...++
T Consensus 81 l~~~l~~~~~~~vDgIl~DLGv 102 (305)
T TIGR00006 81 FFEHLDELLVTKIDGILVDLGV 102 (305)
T ss_pred HHHHHHhcCCCcccEEEEeccC
Confidence 52 234679999986654
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0047 Score=58.38 Aligned_cols=160 Identities=16% Similarity=0.179 Sum_probs=83.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----------C------CEEEEEeCCHHHHH-H------HHHHHHHcCCCCCe--E
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----------G------AKCQGITLSPVQAQ-R------ANALAAARGLADKV--S 211 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----------~------~~v~giD~s~~~~~-~------a~~~~~~~~~~~~v--~ 211 (380)
...+|+|+||.+|..++.+.... + .+|+--|+-.+-.. . -.+.... . .++ .
T Consensus 16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~-~--~~~f~~ 92 (334)
T PF03492_consen 16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKK-F--RNYFVS 92 (334)
T ss_dssp TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHH-T--TSEEEE
T ss_pred CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCC-C--ceEEEE
Confidence 36799999999999998776532 1 36888886332111 1 1111111 1 122 2
Q ss_pred EEEcCCCCCCCCCCCccEEEeccccCCCCC-H--------------------------------------HHHHHHHHHh
Q 016921 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPD-K--------------------------------------SKFVSELARV 252 (380)
Q Consensus 212 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-~--------------------------------------~~~l~~~~r~ 252 (380)
-+-+.+.+--+|+++.|++++..++||+.. | ..+|+.=++-
T Consensus 93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~E 172 (334)
T PF03492_consen 93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEE 172 (334)
T ss_dssp EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhe
Confidence 234455444478999999999999998731 0 0134444556
Q ss_pred cCCCcEEEEEeccCCCCCCCcc---ccchHHHHHHHHHhhcc----------CCCC-CCCHHHHHHHHHhCC-CcEEEEE
Q 016921 253 TAPAGTIIIVTWCHRDLAPSEE---SLQPWEQELLKKICDAY----------YLPA-WCSTADYVKLLQSLS-LEDIKAE 317 (380)
Q Consensus 253 LkpgG~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~----------~~~~-~~~~~~~~~ll~~aG-f~~v~~~ 317 (380)
|+|||++++...+.+...+... .+.......+..+.... .+|. +++.+++++.+++.| |++..++
T Consensus 173 Lv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~~l~dMv~eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gsF~I~~le 252 (334)
T PF03492_consen 173 LVPGGRMVLTFLGRDEEDPSSTGSCMLWDLLADALRDMVAEGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGSFEIEKLE 252 (334)
T ss_dssp EEEEEEEEEEEEE-STSSTTSTTCCCHHHHHHHHHHHHHHTTSS-HCCCCTG--SBB---HHHHHHHHHHHTSEEEEEEE
T ss_pred eccCcEEEEEEeeccccccccCCcchHHHHHHHHHHHHHHcCCcCHHHhhceeCCccCCCHHHHHHHHhcCCCEEEEEEE
Confidence 8899999999887766332222 11222223333322222 2232 468999999998776 7776665
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
.+.
T Consensus 253 ~~~ 255 (334)
T PF03492_consen 253 LFE 255 (334)
T ss_dssp EEE
T ss_pred EEe
Confidence 444
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0039 Score=53.23 Aligned_cols=106 Identities=15% Similarity=0.237 Sum_probs=78.2
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCc
Q 016921 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQF 227 (380)
Q Consensus 152 ~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~f 227 (380)
...+..++.+||-+|.-+|....++++-.+ ..+++++.|+......-..+.+. +|+--+..|+.... .--+..
T Consensus 70 ~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~V 146 (231)
T COG1889 70 KNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKV 146 (231)
T ss_pred ccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccc
Confidence 334456699999999999999999998764 67999999998876665555543 57888999997742 112568
Q ss_pred cEEEeccccCCCCCH-HHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDK-SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+..-+- ++. .-+..++...||+||.++++-
T Consensus 147 Dviy~DVAQ---p~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 147 DVIYQDVAQ---PNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cEEEEecCC---chHHHHHHHHHHHhcccCCeEEEEE
Confidence 988863211 233 346678999999999887764
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00019 Score=58.93 Aligned_cols=58 Identities=22% Similarity=0.246 Sum_probs=49.7
Q ss_pred EEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 161 NVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.|||||||.|.++..+++.. +.+++++|+++.+.+.++++++..+++ ++.++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 38999999999999998876 458999999999999999999887764 58888877654
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00015 Score=63.55 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=97.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~ 219 (380)
.+...++...+.. ++..+||||+.||.++..+.++...+|+++|....++..--+ ..+++ .+...|+..
T Consensus 66 KL~~ale~F~l~~----k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~ 135 (245)
T COG1189 66 KLEKALEEFELDV----KGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRY 135 (245)
T ss_pred HHHHHHHhcCcCC----CCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhh
Confidence 4455566666553 589999999999999999999856789999999988765322 11344 445556665
Q ss_pred CC---CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC-
Q 016921 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA- 295 (380)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 295 (380)
+. +. +..|++++.-++. ....++..+..+++|+|.++... .+.+.... ..+ ....-+..
T Consensus 136 l~~~~~~-~~~d~~v~DvSFI---SL~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr--------~~v---~kkGvv~d~ 198 (245)
T COG1189 136 LTPEDFT-EKPDLIVIDVSFI---SLKLILPALLLLLKDGGDLVLLV--KPQFEAGR--------EQV---GKKGVVRDP 198 (245)
T ss_pred CCHHHcc-cCCCeEEEEeehh---hHHHHHHHHHHhcCCCceEEEEe--cchhhhhh--------hhc---CcCceecCc
Confidence 52 22 4788999876654 45678999999999999888754 11111000 011 11111111
Q ss_pred ---CCCHHHHHHHHHhCCCcEEEEE
Q 016921 296 ---WCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 296 ---~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
-.-...+.+++++.||....+.
T Consensus 199 ~~~~~v~~~i~~~~~~~g~~~~gl~ 223 (245)
T COG1189 199 KLHAEVLSKIENFAKELGFQVKGLI 223 (245)
T ss_pred chHHHHHHHHHHHHhhcCcEEeeeE
Confidence 1234677888888999987664
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00058 Score=63.03 Aligned_cols=106 Identities=22% Similarity=0.304 Sum_probs=83.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEe-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~- 232 (380)
++.+|||+.++.|.=+..+++.. ...+++.|+++.-+...+.++...|. .++.....|..... .....||.|+.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~-~~v~~~~~D~~~~~~~~~~~~fd~VlvD 163 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGV-FNVIVINADARKLDPKKPESKFDRVLVD 163 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT--SSEEEEESHHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCC-ceEEEEeeccccccccccccccchhhcC
Confidence 48899999999999999999877 47999999999999999999999887 46777778877651 22346999996
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhc----CCCcEEEEEec
Q 016921 233 -----MESGEHMPDK----------------SKFVSELARVT----APAGTIIIVTW 264 (380)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~L----kpgG~l~~~~~ 264 (380)
.+++..-++. .++|+.+.+.+ ||||+++.++-
T Consensus 164 aPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTC 220 (283)
T PF01189_consen 164 APCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTC 220 (283)
T ss_dssp CSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEES
T ss_pred CCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEec
Confidence 2233332321 35889999999 99999999873
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00012 Score=70.65 Aligned_cols=67 Identities=30% Similarity=0.496 Sum_probs=59.0
Q ss_pred HHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 147 ~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+++++.. +..+||+-||||.+++.+++. ...|+||++++..++.|+.++..+|+ .|.+|+++-++++
T Consensus 377 e~~~l~~-----~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~Ngi-sNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 377 EWAGLPA-----DKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGI-SNATFIVGQAEDL 443 (534)
T ss_pred HHhCCCC-----CcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCc-cceeeeecchhhc
Confidence 4555554 789999999999999999987 67999999999999999999999988 5899999977764
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00041 Score=56.22 Aligned_cols=80 Identities=20% Similarity=0.305 Sum_probs=59.2
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccccCCCC--C------H---HHHHHHH
Q 016921 183 KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMP--D------K---SKFVSEL 249 (380)
Q Consensus 183 ~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~--~------~---~~~l~~~ 249 (380)
+|+|+|+-+..++..++++.+.++..+++++..+-+++. .+.+++|+++.+. .++| | + ..+++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNL--GYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNL--GYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEE--SB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEEC--CcCCCCCCCCCcCcHHHHHHHHHH
Confidence 589999999999999999999998889999998877764 2335899987653 3443 2 1 4689999
Q ss_pred HHhcCCCcEEEEEec
Q 016921 250 ARVTAPAGTIIIVTW 264 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~ 264 (380)
.+.|+|||.+.++.+
T Consensus 79 l~lL~~gG~i~iv~Y 93 (140)
T PF06962_consen 79 LELLKPGGIITIVVY 93 (140)
T ss_dssp HHHEEEEEEEEEEE-
T ss_pred HHhhccCCEEEEEEe
Confidence 999999999999874
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0012 Score=55.58 Aligned_cols=97 Identities=18% Similarity=0.298 Sum_probs=68.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC--------CCCCC
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ--------PFPDG 225 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~--------~~~~~ 225 (380)
.|+.+|||+||-.|.|+....++. ...|.|||+-... .++.+.++++ |+.+. .+|+.
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~~------------p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHIE------------PPEGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeecc------------CCCCcccccccccCCHHHHHHHHHhCCCC
Confidence 469999999999999999988876 5689999985432 2245666666 77663 25678
Q ss_pred CccEEEeccccCCC-----CCHH-------HHHHHHHHhcCCCcEEEEEeccC
Q 016921 226 QFDLVWSMESGEHM-----PDKS-------KFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 226 ~fD~V~~~~~l~~~-----~~~~-------~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
..|+|++... +.. .|-. .++.-+...++|+|.+++-.|..
T Consensus 136 ~VdvVlSDMa-pnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g 187 (232)
T KOG4589|consen 136 PVDVVLSDMA-PNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDG 187 (232)
T ss_pred cccEEEeccC-CCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecC
Confidence 8999987432 222 1222 34455566788999999987643
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=3.6e-05 Score=62.41 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.2
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+++-.....+|.+++.|+|++-++++|+. +-..+++++++.|||||+|-++.+
T Consensus 31 vdlvc~As~e~~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESMFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhccCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 3334333344578899999999999999994 456799999999999999999874
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0014 Score=58.33 Aligned_cols=90 Identities=21% Similarity=0.255 Sum_probs=67.6
Q ss_pred HHHHHHcCCCCCCCCCCC--EEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCCeEE
Q 016921 143 EETLRFAGVSEDPTKRPK--NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR------G--LADKVSF 212 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~--~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~------~--~~~~v~~ 212 (380)
+.+++..+++. +. +|||+-+|+|..+..++.. |+.|+++|-++......+..+... + +..++++
T Consensus 76 ~~l~kAvglk~-----g~~p~VLD~TAGlG~Da~~las~-G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l 149 (250)
T PRK10742 76 EAVAKAVGIKG-----DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQL 149 (250)
T ss_pred cHHHHHhCCCC-----CCCCEEEECCCCccHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEE
Confidence 45566666665 55 8999999999999999987 889999999999988888777653 2 1246888
Q ss_pred EEcCCCCC-CCCCCCccEEEeccccCC
Q 016921 213 QVGDALQQ-PFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 213 ~~~d~~~~-~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|..+. .-...+||+|++-=.+.|
T Consensus 150 ~~~da~~~L~~~~~~fDVVYlDPMfp~ 176 (250)
T PRK10742 150 IHASSLTALTDITPRPQVVYLDPMFPH 176 (250)
T ss_pred EeCcHHHHHhhCCCCCcEEEECCCCCC
Confidence 88887664 111247999988655555
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00091 Score=56.98 Aligned_cols=103 Identities=23% Similarity=0.254 Sum_probs=71.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCCCCCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG------LADKVSFQVGDALQQPFPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~~~~~~fD~V~ 231 (380)
...+.|||||-|.+...|+..+ ..-+.|.+|--..-++.+.++...+ ...|+.+...++...- .+-|..-.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l--pn~f~kgq 138 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL--PNFFEKGQ 138 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc--cchhhhcc
Confidence 5679999999999999999988 6789999999998898888876643 2345666666655431 12222212
Q ss_pred eccccCCCCCH-------------HHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDK-------------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~-------------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-.+..++|+ ...+.+..-+|++||.++...
T Consensus 139 Lskmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 139 LSKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred cccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 22222233333 257788889999999988865
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0023 Score=51.71 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=84.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+.++.++..+.-. +..+.+|+|+|.|......++..-...+|+++++-.+.+++-+.-..|+...+.|..-|+.+
T Consensus 59 eQv~nVLSll~~n-----~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK 133 (199)
T KOG4058|consen 59 EQVENVLSLLRGN-----PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWK 133 (199)
T ss_pred HHHHHHHHHccCC-----CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhh
Confidence 3455666665433 47899999999999999988873367899999999999999998888888899999999888
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..+. .|..|++..+=.-++| +-.++..-+..|..++.+-|
T Consensus 134 ~dl~--dy~~vviFgaes~m~d---Le~KL~~E~p~nt~vvacRF 173 (199)
T KOG4058|consen 134 VDLR--DYRNVVIFGAESVMPD---LEDKLRTELPANTRVVACRF 173 (199)
T ss_pred cccc--ccceEEEeehHHHHhh---hHHHHHhhCcCCCeEEEEec
Confidence 7654 4555554443333333 33455556777888887765
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.019 Score=52.29 Aligned_cols=171 Identities=15% Similarity=0.062 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEE
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQ 213 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~ 213 (380)
....+.++..+....-.. ...|+.+|||-=.-...+....+..++=+|. |+.++.-++.+.+.+ .+.+..++
T Consensus 64 ~~Rtr~~D~~i~~~~~~g-----~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v 137 (260)
T TIGR00027 64 AVRTRFFDDFLLAAVAAG-----IRQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAV 137 (260)
T ss_pred HHHHHHHHHHHHHHHhcC-----CcEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEe
Confidence 334455666655432121 3469999999877666664321345555555 556666666666543 24678889
Q ss_pred EcCCCCC--------CCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHH
Q 016921 214 VGDALQQ--------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQEL 283 (380)
Q Consensus 214 ~~d~~~~--------~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~ 283 (380)
..|+... .+..+..-++++-+++.+++. ..++++.+.+...||+.+++..... ... ..........
T Consensus 138 ~~Dl~~~w~~~L~~~gfd~~~ptl~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~--~~~--~~~~~~~~~~ 213 (260)
T TIGR00027 138 PVDLRQDWPAALAAAGFDPTAPTAWLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP--LDG--EWRAGMRAPV 213 (260)
T ss_pred ccCchhhHHHHHHhCCCCCCCCeeeeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc--cch--hHHHHHHHHH
Confidence 9998621 122233446777788888854 4678999998888988888754332 100 0000011111
Q ss_pred HHHH--hhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 284 LKKI--CDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 284 ~~~~--~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
.... ..........+++++.++|++.||+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 214 YHAARGVDGSGLVFGIDRADVAEWLAERGWRASEH 248 (260)
T ss_pred HHhhhcccccccccCCChhhHHHHHHHCCCeeecC
Confidence 1111 11111222467899999999999998753
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00057 Score=66.20 Aligned_cols=98 Identities=22% Similarity=0.285 Sum_probs=64.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~~l~ 237 (380)
-..|+|...|.|+++..|.+. . |......|..-.-.-..+-+.|+ +-.+ .|. +.++.-+.+||+|++.+++.
T Consensus 366 iRNVMDMnAg~GGFAAAL~~~-~--VWVMNVVP~~~~ntL~vIydRGL---IG~y-hDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 366 IRNVMDMNAGYGGFAAALIDD-P--VWVMNVVPVSGPNTLPVIYDRGL---IGVY-HDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeeeecccccHHHHHhccC-C--ceEEEecccCCCCcchhhhhccc---chhc-cchhhccCCCCcchhheehhhhhh
Confidence 467999999999999999875 2 33333333211111111222333 2122 233 33454569999999999888
Q ss_pred CCCC---HHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPD---KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~---~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+ ...++-|+-|+|+|||.+++-|
T Consensus 439 ~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 7754 5789999999999999999976
|
; GO: 0008168 methyltransferase activity |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0024 Score=55.36 Aligned_cols=102 Identities=18% Similarity=0.300 Sum_probs=57.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~----~~~ 225 (380)
+..|+|+|.-.|+.+..+|..+ .++|+|+|++..... ++..+...+.++|+++++|..+.. . ...
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~--~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~ 110 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHN--RKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPP 110 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT----S-GGGG----TTEEEEES-SSSTHHHHTSGSS----
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhc--hHHHhhccccCceEEEECCCCCHHHHHHHHHhhccC
Confidence 7899999999999888777643 479999999543321 122223345579999999987742 1 112
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+|+ -.+-|.-.+..+.|+....++++|+++++.|
T Consensus 111 ~~vlVi-lDs~H~~~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 111 HPVLVI-LDSSHTHEHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp SSEEEE-ESS----SSHHHHHHHHHHT--TT-EEEETS
T ss_pred CceEEE-ECCCccHHHHHHHHHHhCccCCCCCEEEEEe
Confidence 233333 3444444677888999999999999999976
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0015 Score=58.01 Aligned_cols=79 Identities=24% Similarity=0.368 Sum_probs=59.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+|||||.--++....... +..++|+|++..+++.....+...++ ...+...|...-+ +....|+.+..=++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~--~~~~~v~Dl~~~~-~~~~~DlaLllK~l 181 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV--PHDARVRDLLSDP-PKEPADLALLLKTL 181 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSH-TTSEESEEEEET-H
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC--CcceeEeeeeccC-CCCCcchhhHHHHH
Confidence 37899999999999998876654 68999999999999999999888775 4677777877653 46789999987777
Q ss_pred CCC
Q 016921 237 EHM 239 (380)
Q Consensus 237 ~~~ 239 (380)
+.+
T Consensus 182 p~l 184 (251)
T PF07091_consen 182 PCL 184 (251)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0062 Score=54.43 Aligned_cols=105 Identities=23% Similarity=0.153 Sum_probs=73.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH--H--HHHcCCCCCeEEEEcCCCCCC---CCCCC-ccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA--L--AAARGLADKVSFQVGDALQQP---FPDGQ-FDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~--~--~~~~~~~~~v~~~~~d~~~~~---~~~~~-fD~V 230 (380)
..+|||+|+|+|..+..++...++.|+..|+.......... . .....+...+.+...+..+.+ +-... ||+|
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dli 166 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDLI 166 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccEE
Confidence 66899999999988888887668899999986554332222 1 111122235655555554432 11123 9999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++..++++-...+.++..++..|..+|.+++..
T Consensus 167 lasDvvy~~~~~e~Lv~tla~ll~~~~~i~l~~ 199 (248)
T KOG2793|consen 167 LASDVVYEEESFEGLVKTLAFLLAKDGTIFLAY 199 (248)
T ss_pred EEeeeeecCCcchhHHHHHHHHHhcCCeEEEEE
Confidence 999999998888999999999999999655544
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.032 Score=49.41 Aligned_cols=128 Identities=16% Similarity=0.126 Sum_probs=72.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~~ 234 (380)
+++||=||=+.- .++.++-.. ..+|+.+|+++..++..++.+++.|++ ++.+..|+.+. +| .++||++++.
T Consensus 45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~-LP~~~~~~fD~f~TD- 119 (243)
T PF01861_consen 45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDP-LPEELRGKFDVFFTD- 119 (243)
T ss_dssp T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS----TTTSS-BSEEEE--
T ss_pred CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEeccccc-CCHHHhcCCCEEEeC-
Confidence 889999995432 233333322 789999999999999999999999985 99999999873 33 3899999873
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
--+-+....-++.+....||..|...+..+++... +... --++++.+.+.||.+.
T Consensus 120 PPyT~~G~~LFlsRgi~~Lk~~g~~gy~~~~~~~~-----s~~~--------------------~~~~Q~~l~~~gl~i~ 174 (243)
T PF01861_consen 120 PPYTPEGLKLFLSRGIEALKGEGCAGYFGFTHKEA-----SPDK--------------------WLEVQRFLLEMGLVIT 174 (243)
T ss_dssp --SSHHHHHHHHHHHHHTB-STT-EEEEEE-TTT-------HHH--------------------HHHHHHHHHTS--EEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCCceEEEEEecCcC-----cHHH--------------------HHHHHHHHHHCCcCHH
Confidence 11122233568889999998777444433332210 0000 1256678889999887
Q ss_pred EE
Q 016921 315 KA 316 (380)
Q Consensus 315 ~~ 316 (380)
++
T Consensus 175 di 176 (243)
T PF01861_consen 175 DI 176 (243)
T ss_dssp EE
T ss_pred HH
Confidence 65
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0045 Score=58.62 Aligned_cols=108 Identities=15% Similarity=0.169 Sum_probs=83.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccE
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDL 229 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~ 229 (380)
..+++.||||+.+-.|.=+.++|... ...|++.|.+..-+...++++...|+ .+..+...|..++| ++. +||.
T Consensus 238 ~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv-~ntiv~n~D~~ef~~~~~~~-~fDR 315 (460)
T KOG1122|consen 238 DPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGV-TNTIVSNYDGREFPEKEFPG-SFDR 315 (460)
T ss_pred CCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCC-CceEEEccCcccccccccCc-ccce
Confidence 44679999999999999888877755 46899999999999999999999897 46778888887664 444 8999
Q ss_pred EEec----c--ccCC------CC---C-------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSM----E--SGEH------MP---D-------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~----~--~l~~------~~---~-------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.- + ++.- .. + ..++|-.+...+++||+|+-++-
T Consensus 316 VLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTC 372 (460)
T KOG1122|consen 316 VLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTC 372 (460)
T ss_pred eeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEee
Confidence 9852 2 2211 11 0 13577788999999999999874
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0027 Score=60.17 Aligned_cols=74 Identities=15% Similarity=0.153 Sum_probs=58.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~ 232 (380)
...|||||+|||.++...++..+-.|++++.-..|.+.|++...+.|..++|.++.-...+... +....|+++.
T Consensus 67 kv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4578999999999999888876668999999999999999999999999999988766555431 1223555543
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0078 Score=55.64 Aligned_cols=106 Identities=20% Similarity=0.299 Sum_probs=66.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCC-CCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFP-DGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~-~~~fD~V~~~ 233 (380)
+.+|||+|.|.|.-+..+-.-+ -..++.++.|+..-+..-........ ....+...|+.. ++++ ...|++|+..
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t-~~td~r~s~vt~dRl~lp~ad~ytl~i~~ 192 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVST-EKTDWRASDVTEDRLSLPAADLYTLAIVL 192 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhccc-ccCCCCCCccchhccCCCccceeehhhhh
Confidence 5679999999887766655544 24677788888766655544432222 223333333322 2222 3456666665
Q ss_pred cccCCCCC---HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.-|-+... ....++.+..++.|||.|++++.+
T Consensus 193 ~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErG 227 (484)
T COG5459 193 DELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERG 227 (484)
T ss_pred hhhccccCcchHHHHHHHHHHhccCCCeEEEEeCC
Confidence 55544422 345889999999999999999954
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.011 Score=53.82 Aligned_cols=89 Identities=18% Similarity=0.188 Sum_probs=73.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++++.+..+.+.+ +...+|.--|.|+.+..+++++ ..+++|+|-++.+++.|+++....+ +++.+++.++.
T Consensus 11 Ll~E~i~~L~~~~-----~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~ 83 (314)
T COG0275 11 LLNEVVELLAPKP-----DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFA 83 (314)
T ss_pred HHHHHHHhcccCC-----CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHH
Confidence 6677777777665 8999999999999999999998 3679999999999999999987654 68999999887
Q ss_pred CCC-----CCCCCccEEEecccc
Q 016921 219 QQP-----FPDGQFDLVWSMESG 236 (380)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l 236 (380)
++. ...+++|.|+...++
T Consensus 84 ~l~~~l~~~~i~~vDGiL~DLGV 106 (314)
T COG0275 84 NLAEALKELGIGKVDGILLDLGV 106 (314)
T ss_pred HHHHHHHhcCCCceeEEEEeccC
Confidence 752 224688988876544
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0089 Score=62.15 Aligned_cols=104 Identities=22% Similarity=0.265 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeCCH---HHHHHHH-----------HHHHHc-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITLSP---VQAQRAN-----------ALAAAR-----GL 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~giD~s~---~~~~~a~-----------~~~~~~-----~~ 206 (380)
.-+|||+|-|+|.+.....+.+ ..+++.+|..| +.+..+- +..... |+
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 5799999999999877766433 13788888543 3333322 222111 11
Q ss_pred ------CC--CeEEEEcCCCCC-CCCCCCccEEEecccc-CCCCCH--HHHHHHHHHhcCCCcEEEEE
Q 016921 207 ------AD--KVSFQVGDALQQ-PFPDGQFDLVWSMESG-EHMPDK--SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 207 ------~~--~v~~~~~d~~~~-~~~~~~fD~V~~~~~l-~~~~~~--~~~l~~~~r~LkpgG~l~~~ 262 (380)
.. ++.+..+|+.+. +--...||+|+....- ..-++. ..+++.++++++|||.+.-.
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~ 205 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATF 205 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEe
Confidence 01 234666777652 2112569999875322 222332 68999999999999988753
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.026 Score=56.21 Aligned_cols=100 Identities=19% Similarity=0.287 Sum_probs=70.2
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------CC---
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-----------QP--- 221 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-----------~~--- 221 (380)
.++.+|+=+|+| .|..+...++..|+.|+++|.+++-++.+++. | .++...|..+ +.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl----G----A~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM----G----AEFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----C----CeEEEeccccccccccchhhhcchhH
Confidence 359999999999 58888888888899999999999988887762 2 2322222211 00
Q ss_pred -------CCC--CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 222 -------FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 -------~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+ ..+|+|+.......-+.+..+.+++.+.+||||.++..-.
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 4699998766554333444446999999999999887654
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0035 Score=57.97 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=62.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++++++.+...+ +..++|.--|.|+.+..+++.+ +++|+|+|.++.+++.|++++... .+++.++.+++.+
T Consensus 8 ll~Evl~~L~~~~-----~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALNPKP-----GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT--T-----T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGG
T ss_pred cHHHHHHhhCcCC-----CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHH
Confidence 4566677666554 8899999999999999999987 789999999999999998876533 4689999999877
Q ss_pred CC-----C-CCCCccEEEecccc
Q 016921 220 QP-----F-PDGQFDLVWSMESG 236 (380)
Q Consensus 220 ~~-----~-~~~~fD~V~~~~~l 236 (380)
+. . ...++|.|+...++
T Consensus 81 l~~~l~~~~~~~~~dgiL~DLGv 103 (310)
T PF01795_consen 81 LDEYLKELNGINKVDGILFDLGV 103 (310)
T ss_dssp HHHHHHHTTTTS-EEEEEEE-S-
T ss_pred HHHHHHHccCCCccCEEEEcccc
Confidence 52 2 34578888875443
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.013 Score=51.86 Aligned_cols=91 Identities=26% Similarity=0.327 Sum_probs=53.2
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHH---HHHHHcCCC-----CCeEEEEc
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN---ALAAARGLA-----DKVSFQVG 215 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~---~~~~~~~~~-----~~v~~~~~ 215 (380)
.+++..+++. ....+|||.-+|-|.-+..++.. |++|++++-||.+....+ +++...... .+++++.+
T Consensus 64 ~l~kA~Glk~---~~~~~VLDaTaGLG~Da~vlA~~-G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~ 139 (234)
T PF04445_consen 64 PLAKAVGLKP---GMRPSVLDATAGLGRDAFVLASL-GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHG 139 (234)
T ss_dssp HHHHHTT-BT---TB---EEETT-TTSHHHHHHHHH-T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES
T ss_pred HHHHHhCCCC---CCCCEEEECCCcchHHHHHHHcc-CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcC
Confidence 4556666654 11248999999999999999864 999999999998765544 333332211 37999999
Q ss_pred CCCC-CCCCCCCccEEEeccccCC
Q 016921 216 DALQ-QPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 216 d~~~-~~~~~~~fD~V~~~~~l~~ 238 (380)
|..+ +..++++||+|++-=++.+
T Consensus 140 d~~~~L~~~~~s~DVVY~DPMFp~ 163 (234)
T PF04445_consen 140 DALEYLRQPDNSFDVVYFDPMFPE 163 (234)
T ss_dssp -CCCHCCCHSS--SEEEE--S---
T ss_pred CHHHHHhhcCCCCCEEEECCCCCC
Confidence 9887 3455789999998766655
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.02 Score=55.82 Aligned_cols=125 Identities=16% Similarity=0.131 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCC
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADK 209 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~ 209 (380)
...++.....+++..+-.. .+....|+-+|+|.|-+.....+.. ..++++++-+|.++-..+.+ .-..+..+
T Consensus 346 ~~Yq~Ai~~AL~Drvpd~~--a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~-n~~~W~~~ 422 (649)
T KOG0822|consen 346 DQYQQAILKALLDRVPDES--AKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR-NFECWDNR 422 (649)
T ss_pred HHHHHHHHHHHHhhCcccc--cCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh-chhhhcCe
Confidence 3444555555555544322 1125678899999999876654432 35799999999987766653 23345678
Q ss_pred eEEEEcCCCCCCCCCCCccEEEeccccCCCCCH---HHHHHHHHHhcCCCcEEEEEe
Q 016921 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK---SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|.++..|++.++-|.++.|++++ ..|.-+.|- .+.|..+-+.|||+|+.+=..
T Consensus 423 Vtii~~DMR~w~ap~eq~DI~VS-ELLGSFGDNELSPECLDG~q~fLkpdgIsIP~s 478 (649)
T KOG0822|consen 423 VTIISSDMRKWNAPREQADIIVS-ELLGSFGDNELSPECLDGAQKFLKPDGISIPSS 478 (649)
T ss_pred eEEEeccccccCCchhhccchHH-HhhccccCccCCHHHHHHHHhhcCCCceEccch
Confidence 99999999999855689998875 555555543 689999999999998765543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.028 Score=52.70 Aligned_cols=95 Identities=22% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCCCCCCCCCccEEEecc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~~~~~~~~fD~V~~~~ 234 (380)
.|+.+|+=+|+| .|..+..+|+..+++|+++|.+++-++.|++.-+ -.++... ......-.+.||+|+..-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGA-------d~~i~~~~~~~~~~~~~~~d~ii~tv 237 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGA-------DHVINSSDSDALEAVKEIADAIIDTV 237 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCC-------cEEEEcCCchhhHHhHhhCcEEEECC
Confidence 358999988887 5678888888779999999999999998887432 2333322 211111123499988653
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
. ...+....+.|++||.+++.-..
T Consensus 238 ~-------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 238 G-------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred C-------hhhHHHHHHHHhcCCEEEEECCC
Confidence 2 45688899999999999998754
|
|
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.015 Score=55.75 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=78.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCC-CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQP-FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (380)
+.+|||.=+|+|.=++..+.+. ...|+.-|+|++.++..+++++.+++.. ++++...|+..+- ...+.||+|=..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD- 128 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD- 128 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE--
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC-
Confidence 5689999999999999999885 3689999999999999999999999877 6899999987642 246789998652
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..+..++..+.+.++.||.|.++.
T Consensus 129 ---PfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 129 ---PFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ---CCCCccHhHHHHHHHhhcCCEEEEec
Confidence 33467889999999999999999975
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.11 Score=48.86 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
..+-+++...+.. .+..++|||.|+|.++..+++.. ..++..|++|+...+.-+++++..
T Consensus 64 ~~~~~~wq~~g~p-----~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 64 EQFLQLWQELGRP-----APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred HHHHHHHHHhcCC-----CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 3344444444433 26789999999999999988754 468999999999888777776554
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.067 Score=51.75 Aligned_cols=99 Identities=19% Similarity=0.192 Sum_probs=68.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CC-CCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PF-PDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~-~~~~fD 228 (380)
++.+||.+|||. |..+..+++..+. +++++|.+++..+.+++.. + +.++...-.+ . .+ ....+|
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---~----~~vi~~~~~~~~~~~l~~~~~~~~~D 256 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---G----AETINFEEVDDVVEALRELTGGRGPD 256 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---C----cEEEcCCcchHHHHHHHHHcCCCCCC
Confidence 488999999987 8888999988776 6999999999988877642 1 1222111110 1 11 234689
Q ss_pred EEEecccc-----------CC----CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESG-----------EH----MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l-----------~~----~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-.-.- .| ..+....++++.+.|+++|.+++..
T Consensus 257 ~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g 306 (386)
T cd08283 257 VCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIG 306 (386)
T ss_pred EEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEc
Confidence 88764321 11 1445678999999999999998875
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.17 Score=50.43 Aligned_cols=106 Identities=22% Similarity=0.279 Sum_probs=75.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-----CCCCcc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-----AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-----PDGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-----~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----~~~~fD 228 (380)
..+|.|-.||+|.+.....+..+ ..++|.|+++.....++.+.--+|....+....+|-..-|. ..+.||
T Consensus 187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl~~~~~~~~~~~~~~D 266 (489)
T COG0286 187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTLSNPKHDDKDDKGKFD 266 (489)
T ss_pred CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccccCCcccccCCcccee
Confidence 66999999999998888777652 56999999999999999988777764344556665544332 236799
Q ss_pred EEEeccccC---CC---------------------C-CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGE---HM---------------------P-DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~---~~---------------------~-~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+++--+. +. . ...+.++.+...|+|||+..+...
T Consensus 267 ~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 267 FVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred EEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 888742221 00 0 115689999999999997666553
|
|
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.079 Score=46.39 Aligned_cols=103 Identities=14% Similarity=0.198 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHH-HHHcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeE
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL-AKKFGAKCQGITLSPVQAQRANALAAAR-GLADKVS 211 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l-~~~~~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~ 211 (380)
-|....+.+..+|....-.. ..+..++||||.|..-.=-.+ ...+|.+.+|.|+++..++.|+..+..+ ++...++
T Consensus 56 gRAdYih~laDLL~s~~g~~--~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~ 133 (292)
T COG3129 56 GRADYIHHLADLLASTSGQI--PGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIR 133 (292)
T ss_pred ChhHHHHHHHHHHHhcCCCC--CcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhhee
Confidence 34455555556655433211 135778999988754321111 1223889999999999999999998776 6666677
Q ss_pred EEEcCCCC-C----CCCCCCccEEEeccccCC
Q 016921 212 FQVGDALQ-Q----PFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 212 ~~~~d~~~-~----~~~~~~fD~V~~~~~l~~ 238 (380)
+....-.+ + .-.++.||++.|+--+|.
T Consensus 134 lr~qk~~~~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 134 LRRQKDSDAIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred EEeccCccccccccccccceeeeEecCCCcch
Confidence 66543222 1 122688999999876653
|
|
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.019 Score=47.32 Aligned_cols=130 Identities=18% Similarity=0.146 Sum_probs=77.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHH-HHHHHHHcCCCCCe-EEEEcCCCC-CCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQR-ANALAAARGLADKV-SFQVGDALQ-QPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~-a~~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~V~~~~ 234 (380)
+++++-+|+.. -|...++-.. .++|.-++.++--++. .+ +++ .+...|+.. ..--.++||.+.+..
T Consensus 2 ~~~g~V~GS~~-PwvEv~aL~~GA~~iltveyn~L~i~~~~~---------dr~ssi~p~df~~~~~~y~~~fD~~as~~ 71 (177)
T PF03269_consen 2 GKSGLVVGSMQ-PWVEVMALQHGAAKILTVEYNKLEIQEEFR---------DRLSSILPVDFAKNWQKYAGSFDFAASFS 71 (177)
T ss_pred CceEEEEecCC-chhhHHHHHcCCceEEEEeecccccCcccc---------cccccccHHHHHHHHHHhhccchhhheec
Confidence 56788888774 4454454444 4568888876521111 01 111 111122111 111247899999999
Q ss_pred ccCCCC-----CH------HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 235 SGEHMP-----DK------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 235 ~l~~~~-----~~------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
+++|+. |+ ...+.++.++|||||.|++..+...+.. .+..++.+.+..+.
T Consensus 72 siEh~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~d~i-------------------~fNahRiYg~~rL~ 132 (177)
T PF03269_consen 72 SIEHFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGTDAI-------------------QFNAHRIYGPIRLA 132 (177)
T ss_pred hhccccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCCcce-------------------EEecceeecHhHHH
Confidence 999972 32 4688899999999999999875432211 12223345666777
Q ss_pred HHHHhCCCcEEEEEec
Q 016921 304 KLLQSLSLEDIKAEDW 319 (380)
Q Consensus 304 ~ll~~aGf~~v~~~~~ 319 (380)
.++. ||+.+..-..
T Consensus 133 mm~~--gfe~i~tfs~ 146 (177)
T PF03269_consen 133 MMFY--GFEWIDTFSG 146 (177)
T ss_pred HHhC--CcEEEeeecc
Confidence 7776 9998876433
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.024 Score=49.41 Aligned_cols=94 Identities=22% Similarity=0.286 Sum_probs=69.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C------C---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-G------A---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~------~---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------- 221 (380)
-.+++|+..-.|.|+..+.+++ . . .+++||+.+-. .+ +.|.-+++|+.+..
T Consensus 42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI-~GV~qlq~DIT~~stae~Ii~ 109 (294)
T KOG1099|consen 42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PI-EGVIQLQGDITSASTAEAIIE 109 (294)
T ss_pred hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------cc-CceEEeecccCCHhHHHHHHH
Confidence 4689999999999999999876 1 1 39999996532 22 46888999998742
Q ss_pred -CCCCCccEEEeccc-----cCCCCCH------HHHHHHHHHhcCCCcEEEEEec
Q 016921 222 -FPDGQFDLVWSMES-----GEHMPDK------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 -~~~~~fD~V~~~~~-----l~~~~~~------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|..++.|+|+|.++ +|-+.+. .++|.-...+|||||.++---+
T Consensus 110 hfggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKif 164 (294)
T KOG1099|consen 110 HFGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVAKIF 164 (294)
T ss_pred HhCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeehhhh
Confidence 56679999999654 3433322 2466677889999999887544
|
|
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.25 Score=45.66 Aligned_cols=99 Identities=17% Similarity=0.221 Sum_probs=70.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---------CCCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---------PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---------~~~~~~ 226 (380)
.+.+||=+|+| .|..+...|+.+ ..+|+.+|+++.-++.|++ + |. .+.......... .+....
T Consensus 169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---Ga--~~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---GA--TVTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---CC--eEEeeccccccHHHHHHHHHhhccccC
Confidence 49999999999 588888888888 4689999999999999998 3 21 111111111111 122345
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
+|+.+-...+ +..++.+...+++||.+++..+....
T Consensus 243 ~d~~~dCsG~------~~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCSGA------EVTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEccCc------hHHHHHHHHHhccCCEEEEeccCCCc
Confidence 8888766544 45678889999999999998876544
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.14 Score=48.59 Aligned_cols=97 Identities=24% Similarity=0.256 Sum_probs=61.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|...-+.....+..+.....+.+|+|+-...
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~----lGa~~vi~~~~~~~~~~~~~~g~~D~vid~~G 244 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE----MGADKLVNPQNDDLDHYKAEKGYFDVSFEVSG 244 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH----cCCcEEecCCcccHHHHhccCCCCCEEEECCC
Confidence 47889989887 46677777877776 69999999998887765 23210011111111111111235888875322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ...++.+.+.|++||++++...
T Consensus 245 -----~-~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 245 -----H-PSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred -----C-HHHHHHHHHHhhcCCEEEEEcc
Confidence 2 3467888999999999998764
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.052 Score=49.26 Aligned_cols=106 Identities=19% Similarity=0.256 Sum_probs=77.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~V~ 231 (380)
++.+||-||.|.|.......++- -..+.-+|++...++..++..... |. .+++.+..+|...+ ....++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 48899999999999998887764 357899999999998888876553 22 35788888886553 23468999988
Q ss_pred eccccCCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-..=--.+- ...+++.+.+.||+||++++..
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6322111111 1457788999999999998865
|
|
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.22 Score=46.87 Aligned_cols=110 Identities=15% Similarity=0.120 Sum_probs=76.5
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc-CC----EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GA----KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------- 221 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~-~~----~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------- 221 (380)
...|+.+|||+.+-.|.=+..+.+.. .. .|++-|.++.-+.......... ..+++.+...|+...|
T Consensus 152 ~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l-~~~~~~v~~~~~~~~p~~~~~~~~ 230 (375)
T KOG2198|consen 152 GVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRL-PSPNLLVTNHDASLFPNIYLKDGN 230 (375)
T ss_pred ccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhcc-CCcceeeecccceeccccccccCc
Confidence 34569999999999999888888765 22 7999999998887777776332 2345555555554433
Q ss_pred -CCCCCccEEEec------cccCCCCCH-----------------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 222 -FPDGQFDLVWSM------ESGEHMPDK-----------------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 222 -~~~~~fD~V~~~------~~l~~~~~~-----------------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.....||-|++. .++.+.++. -.++++..++||+||.++-++-+
T Consensus 231 ~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 231 DKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred hhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 123569999862 222222211 25788999999999999998743
|
|
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.06 Score=45.73 Aligned_cols=104 Identities=17% Similarity=0.253 Sum_probs=76.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---G--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~ 226 (380)
+..|+|+|.-.|..++..|... | .+|.++|++-..++.+... . ++|.|+.++..+.. ..++.
T Consensus 70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~-p~i~f~egss~dpai~eqi~~~~~~y 143 (237)
T COG3510 70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----V-PDILFIEGSSTDPAIAEQIRRLKNEY 143 (237)
T ss_pred CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----C-CCeEEEeCCCCCHHHHHHHHHHhcCC
Confidence 7889999999999888777643 4 7899999987665443221 1 58999999987752 22333
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
--+.+|..+-|+....-+.++-..++|..|-++++.+-...+
T Consensus 144 ~kIfvilDsdHs~~hvLAel~~~~pllsaG~Y~vVeDs~v~d 185 (237)
T COG3510 144 PKIFVILDSDHSMEHVLAELKLLAPLLSAGDYLVVEDSNVND 185 (237)
T ss_pred CcEEEEecCCchHHHHHHHHHHhhhHhhcCceEEEecccccC
Confidence 345556677777777778888999999999999998754433
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.58 Score=45.02 Aligned_cols=102 Identities=22% Similarity=0.246 Sum_probs=60.7
Q ss_pred CCCEEEEECCCcChHH----HHHHHHcC----CEEEEEeC----CHHHHHHHHHHHHH----cCCCCCeEEEEc---CCC
Q 016921 158 RPKNVVDVGCGIGGSS----RYLAKKFG----AKCQGITL----SPVQAQRANALAAA----RGLADKVSFQVG---DAL 218 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~----~~l~~~~~----~~v~giD~----s~~~~~~a~~~~~~----~~~~~~v~~~~~---d~~ 218 (380)
+..+|+|+|.|.|.-- ..|+.+.+ .++|||+. +...++.+.+++.+ .|++ .+|... +.+
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~--fef~~v~~~~~e 187 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVP--FEFHPVVVESLE 187 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCcc--EEEEecccCchh
Confidence 3789999999998733 33444321 48999999 77777777766533 3554 555553 333
Q ss_pred CC-----CCCCCCccEEEeccccCCCCC-------HHHHHHHHHHhcCCCcEEEE
Q 016921 219 QQ-----PFPDGQFDLVWSMESGEHMPD-------KSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 219 ~~-----~~~~~~fD~V~~~~~l~~~~~-------~~~~l~~~~r~LkpgG~l~~ 261 (380)
++ ...++..=+|-+...+||+.+ +...+=...+.|+|.-.+++
T Consensus 188 ~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir~L~P~vvv~~ 242 (374)
T PF03514_consen 188 DLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIRSLNPKVVVLV 242 (374)
T ss_pred hCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHHhcCCCEEEEE
Confidence 32 122333444556677788852 22233345557899855444
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.086 Score=52.43 Aligned_cols=96 Identities=17% Similarity=0.214 Sum_probs=66.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-----------------
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----------------- 219 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----------------- 219 (380)
++.+||=+|+| .|..+..++...|+.|+++|.++..++.++. .| .+++..|..+
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~----lG----a~~v~v~~~e~g~~~~gYa~~~s~~~~ 234 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS----MG----AEFLELDFKEEGGSGDGYAKVMSEEFI 234 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccccceeecCHHHH
Confidence 47899999999 5778888888779999999999998777665 22 2333333211
Q ss_pred ------CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 220 ------QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 220 ------~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
++-.-..+|+|+..-.+..-+.+.-+.+++.+.+|||+.++-
T Consensus 235 ~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVD 282 (511)
T TIGR00561 235 AAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVD 282 (511)
T ss_pred HHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEE
Confidence 010125699997765554444444577889999999998764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.047 Score=50.56 Aligned_cols=105 Identities=19% Similarity=0.208 Sum_probs=77.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHH-------HHHHHHHcCC-CCCeEEEEcCCCCCCCC-CCCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQR-------ANALAAARGL-ADKVSFQVGDALQQPFP-DGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~-------a~~~~~~~~~-~~~v~~~~~d~~~~~~~-~~~fD 228 (380)
+|.-|.|-=.|||.+....+. +|+.|+|.||+-.++.. .+.++++.|. +--+.+..+|....++. +..||
T Consensus 208 pGdivyDPFVGTGslLvsaa~-FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~fD 286 (421)
T KOG2671|consen 208 PGDIVYDPFVGTGSLLVSAAH-FGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKFD 286 (421)
T ss_pred CCCEEecCccccCceeeehhh-hcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcceee
Confidence 599999999999999888776 59999999999988762 3455666663 33467888998887643 56899
Q ss_pred EEEec------------------------cccCCCCC---------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSM------------------------ESGEHMPD---------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~------------------------~~l~~~~~---------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.|+|. ....|++. ....+.-.++.|.-||++++--
T Consensus 287 aIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 287 AIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred EEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 99982 11123322 1346777889999999998854
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.082 Score=48.86 Aligned_cols=58 Identities=12% Similarity=0.059 Sum_probs=48.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
..+++.++.... .++..|||-=||+|..+....+. +.+++|+|++++..+.|++++..
T Consensus 195 ~~L~erlI~~~S------~~GD~VLDPF~GSGTT~~AA~~l-gR~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 195 EALLKRIILASS------NPGDIVLDPFAGSFTTGAVAKAS-GRKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred HHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh
Confidence 457777777654 35999999999999988876664 99999999999999999999853
|
|
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.28 Score=45.97 Aligned_cols=93 Identities=18% Similarity=0.313 Sum_probs=64.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~V 230 (380)
++.+||..|+| .|..+..+++..|.+|++++.++...+.+++ .+. ..+..+-... ....+.+|+|
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~----~g~----~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE----LGA----DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCC----CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 47889998877 4788888888878999999999998877754 232 1111111110 1234579988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.... ....++++.+.|+++|.++....
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 237 FDFVG------TQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEECC
Confidence 75321 14578899999999999988653
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.027 Score=50.95 Aligned_cols=103 Identities=12% Similarity=0.095 Sum_probs=63.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH-----------HHHHcCCCCCeEEEEcCCCCCCC-CCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-----------LAAARGLADKVSFQVGDALQQPF-PDG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~-----------~~~~~~~~~~v~~~~~d~~~~~~-~~~ 225 (380)
.+.+|||+|||.|...+.........+...|.+...+....- ..++.. .-..+...+..+.-+ ..+
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~--~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENH--KVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred cCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcc--cceeccccccccchhhhcc
Confidence 389999999999999988877644778888888776621110 000000 001111110001110 123
Q ss_pred --CccEEEeccccCCCCCHHHH-HHHHHHhcCCCcEEEEE
Q 016921 226 --QFDLVWSMESGEHMPDKSKF-VSELARVTAPAGTIIIV 262 (380)
Q Consensus 226 --~fD~V~~~~~l~~~~~~~~~-l~~~~r~LkpgG~l~~~ 262 (380)
.||+|.+..+++.......+ .......++++|.+++.
T Consensus 194 ~~~ydlIlsSetiy~~~~~~~~~~~~r~~l~~~D~~~~~a 233 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDSLAVLYLLHRPCLLKTDGVFYVA 233 (282)
T ss_pred ccchhhhhhhhhhhCcchhhhhHhhhhhhcCCccchhhhh
Confidence 79999999999887666555 56667777888887764
|
|
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.072 Score=48.31 Aligned_cols=76 Identities=17% Similarity=0.326 Sum_probs=48.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHc-----CCCCCeEEEEcCCCCCCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAAR-----GLADKVSFQVGDALQQPFPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---------~~~v~giD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~~~~~~ 224 (380)
+.+|+|+|+|+|.++..+++.+ ..+++.||+|+.+.+.-++++... ....++.+ ..+..+.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p--- 94 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP--- 94 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence 4799999999999999998865 148999999999988877776542 13335666 33443333
Q ss_pred CCccEEEeccccCCC
Q 016921 225 GQFDLVWSMESGEHM 239 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~ 239 (380)
..-+|+++.++-.+
T Consensus 95 -~~~~iiaNE~~DAl 108 (252)
T PF02636_consen 95 -FPGFIIANELFDAL 108 (252)
T ss_dssp -CCEEEEEESSGGGS
T ss_pred -CCEEEEEeeehhcC
Confidence 23445555555444
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.1 Score=46.04 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~ 199 (380)
..+++.++.... .++..|||.=||+|..+....+. +.+.+|+|+++...+.|++
T Consensus 178 ~~l~~~lI~~~t------~~gdiVlDpF~GSGTT~~aa~~l-~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 178 VELIERLIKAST------NPGDIVLDPFAGSGTTAVAAEEL-GRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHHHHS-------TT-EEEETT-TTTHHHHHHHHT-T-EEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHhhh------ccceeeehhhhccChHHHHHHHc-CCeEEEEeCCHHHHHHhcC
Confidence 457777777654 34899999999999998877664 8999999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.23 Score=39.33 Aligned_cols=46 Identities=13% Similarity=0.088 Sum_probs=40.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
+.+|+|||.+.|..++..+-+....|+++++++...+..++..+..
T Consensus 29 ~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~n 74 (156)
T PHA01634 29 QRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYF 74 (156)
T ss_pred CCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhh
Confidence 8899999999999999998875568999999999999988876543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.1 Score=46.54 Aligned_cols=52 Identities=17% Similarity=0.326 Sum_probs=34.1
Q ss_pred EEEEcCCCCC--CCCCCCccEEEec--ccc--CC-----C--C---C-HHHHHHHHHHhcCCCcEEEEE
Q 016921 211 SFQVGDALQQ--PFPDGQFDLVWSM--ESG--EH-----M--P---D-KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~~-----~--~---~-~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+++++|..+. .++++++|+|+.. +.+ .. + . + ....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 4567776554 4677888888864 111 00 0 0 1 247889999999999988763
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.19 Score=47.30 Aligned_cols=100 Identities=17% Similarity=0.157 Sum_probs=78.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
+.+|||-=+|||.=++..+...+. +|+.-|+||...+.+++++..+.. .+...+..|+..+-.. ...||+|=.
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi---- 127 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI---- 127 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec----
Confidence 678999999999999999988754 899999999999999999987632 3455666777664222 367887753
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-+..+..++..+.+.++.||.|.++-
T Consensus 128 DPFGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 128 DPFGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred CCCCCCchHHHHHHHHhhcCCEEEEEe
Confidence 233466789999999999999999864
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.39 Score=45.83 Aligned_cols=95 Identities=22% Similarity=0.226 Sum_probs=66.9
Q ss_pred CCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC-----CCCC-CCccE
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ-----PFPD-GQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~-----~~~~-~~fD~ 229 (380)
+.+|+=+|||. |.++..+++..| .+|+.+|.++.-++.|++.... ........ .. .... ..+|+
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~-------~~~~~~~~~~~~~~~~~~t~g~g~D~ 241 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA-------DVVVNPSEDDAGAEILELTGGRGADV 241 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC-------eEeecCccccHHHHHHHHhCCCCCCE
Confidence 44999999994 888888888774 7899999999999999874421 11111111 10 1112 36999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++-... ....+..+.+.++|||.+++.-...
T Consensus 242 vie~~G------~~~~~~~ai~~~r~gG~v~~vGv~~ 272 (350)
T COG1063 242 VIEAVG------SPPALDQALEALRPGGTVVVVGVYG 272 (350)
T ss_pred EEECCC------CHHHHHHHHHHhcCCCEEEEEeccC
Confidence 886544 2458899999999999999987543
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.034 Score=53.90 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=83.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~ 231 (380)
++.+|||.=|++|.-++..+.+. ..+|++.|.++..++..+.++.-++..+.++....|+..+ +-....||+|-
T Consensus 109 ~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvID 188 (525)
T KOG1253|consen 109 KSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVID 188 (525)
T ss_pred CcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceEe
Confidence 47899999999999999999987 3589999999999999999888777777778888887654 23357899986
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. -+..+..+|..+.+.++.||.|.++.
T Consensus 189 LD----PyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 189 LD----PYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred cC----CCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 42 22355789999999999999999964
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.18 Score=44.96 Aligned_cols=58 Identities=17% Similarity=0.123 Sum_probs=47.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
.+++.++.... .++..|||-=||+|..+....+. +.+++|+|+++...+.+.+++...
T Consensus 151 ~l~~~~i~~~s------~~g~~vlDpf~Gsgtt~~aa~~~-~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 151 TSLQPLIESFT------HPNAIVLDPFAGSGSTCVAALQS-GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred HHHHHHHHHhC------CCCCEEEeCCCCCCHHHHHHHHc-CCCEEEEecCHHHHHHHHHHHHHH
Confidence 45666665443 24889999999999998877664 889999999999999999998654
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=1.1 Score=39.81 Aligned_cols=105 Identities=15% Similarity=0.178 Sum_probs=70.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCC-CccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDG-QFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~-~fD~V 230 (380)
+...+|+|+|+..=+..+.+.+ ..+++.||+|...+...-+.+...-..-.+.-+++|.+.- ..+.. .==++
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~~ 158 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLFV 158 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEEE
Confidence 6789999999998887777765 2689999999998865444333322112355566676531 12222 22234
Q ss_pred EeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+...++.++. +-..++..+...|+||-++++..
T Consensus 159 flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~LlGv 193 (321)
T COG4301 159 FLGSTLGNLTPGECAVFLTQLRGALRPGDYFLLGV 193 (321)
T ss_pred EecccccCCChHHHHHHHHHHHhcCCCcceEEEec
Confidence 4556777772 34678999999999999999864
|
|
| >PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.73 Score=40.17 Aligned_cols=99 Identities=20% Similarity=0.228 Sum_probs=64.8
Q ss_pred CCEEEEECCCcC----hHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIG----GSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG----~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~ 232 (380)
...++++.|+.| .+++..|.+. +.++++|-+++.-+...++.....++.+.++|+.++..+ +-..-...|+++.
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~vV 121 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFVVV 121 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEEEE
Confidence 678999976643 2344444443 889999999998888888888777776678999988533 2112356888886
Q ss_pred ccccCCCCCHHHHHHHHHHhcC--CCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTA--PAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~Lk--pgG~l~~~~ 263 (380)
..- .+.+.+++.+.++ |.|-+++..
T Consensus 122 Dc~------~~d~~~~vl~~~~~~~~GaVVV~~ 148 (218)
T PF07279_consen 122 DCK------REDFAARVLRAAKLSPRGAVVVCY 148 (218)
T ss_pred eCC------chhHHHHHHHHhccCCCceEEEEe
Confidence 542 2333334444444 567777765
|
The function of this family is unknown. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.18 Score=47.49 Aligned_cols=42 Identities=38% Similarity=0.523 Sum_probs=35.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANAL 200 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~ 200 (380)
-..|+|+|.|.|.++..+.-.++..|.+||-|....+.|++.
T Consensus 154 i~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 154 IDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 346999999999999999988899999999997766666543
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.93 Score=38.24 Aligned_cols=131 Identities=15% Similarity=0.095 Sum_probs=77.5
Q ss_pred ECCCcChHHHHHHHHc--CCEEEEE--eCCHHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 165 VGCGIGGSSRYLAKKF--GAKCQGI--TLSPVQAQRA---NALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 165 iGcGtG~~~~~l~~~~--~~~v~gi--D~s~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
||=|.=.++..|++.. +..+++. |...+..+.- ..++....-..-......|+.++. ...+.||.|+.+
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 5556666777788876 3455554 4433333222 233322211112234566887763 356889999875
Q ss_pred cccCCCC------C---------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 234 ESGEHMP------D---------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 234 ~~l~~~~------~---------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+ -|.. + ...+++.+..+|+++|.+.|+-.... ++..
T Consensus 83 F--PH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~-------py~~-------------------- 133 (166)
T PF10354_consen 83 F--PHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ-------PYDS-------------------- 133 (166)
T ss_pred C--CCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC-------CCcc--------------------
Confidence 4 3443 1 13578889999999999999763211 1111
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCcCC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWSQNVAP 325 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~~~~~~ 325 (380)
=.+.++.+++||..++...+.....+
T Consensus 134 -W~i~~lA~~~gl~l~~~~~F~~~~yp 159 (166)
T PF10354_consen 134 -WNIEELAAEAGLVLVRKVPFDPSDYP 159 (166)
T ss_pred -ccHHHHHHhcCCEEEEEecCCHHHCC
Confidence 13557888899999998877755443
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.95 Score=42.05 Aligned_cols=174 Identities=18% Similarity=0.149 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSF 212 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~ 212 (380)
.....+.+++.+...-... -..|+-+|||--.-+..+-...+..|+-+|. |+.++.=++.+++.+ ++.++.+
T Consensus 74 ~a~Rtr~fD~~~~~~~~~g-----~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~ 147 (297)
T COG3315 74 LAARTRYFDDFVRAALDAG-----IRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRL 147 (297)
T ss_pred HHHHHHHHHHHHHHHHHhc-----ccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEE
Confidence 3445556666665443221 4679999999655554443322456777777 666676666666654 2347899
Q ss_pred EEcCCCCCC---------CCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH
Q 016921 213 QVGDALQQP---------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (380)
Q Consensus 213 ~~~d~~~~~---------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 281 (380)
+..|+.+.. +..+.-=++++-+++.+++. ..+++..+.....||-.++.............. .....
T Consensus 148 Va~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~~~~~~~~~~~~--~~~~~ 225 (297)
T COG3315 148 VAVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDYSLPGSLRDRLR--RPAAR 225 (297)
T ss_pred EeccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEeccccHHHHhccc--chhhh
Confidence 999998532 22344446777888888854 467899999999888887776531111100000 00000
Q ss_pred HHHHHH-hhccCC-CCCCCHHHHHHHHHhCCCcEEEE
Q 016921 282 ELLKKI-CDAYYL-PAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 282 ~~~~~~-~~~~~~-~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
...... ...... -......++..+|.+.||..+..
T Consensus 226 ~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 226 KTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 000000 000000 11245899999999999987654
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=93.95 E-value=1 Score=35.05 Aligned_cols=84 Identities=24% Similarity=0.269 Sum_probs=56.5
Q ss_pred CCcChHHHHHHHHc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEeccccCCC
Q 016921 167 CGIGGSSRYLAKKF--G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 167 cGtG~~~~~l~~~~--~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~ 239 (380)
||.|..+..+++.+ + ..|+.+|.+++..+.++. ..+.++.+|..+.. ..-+..|.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~--------~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~---- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE--------EGVEVIYGDATDPEVLERAGIEKADAVVILTD---- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH--------TTSEEEES-TTSHHHHHHTTGGCESEEEEESS----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh--------cccccccccchhhhHHhhcCccccCEEEEccC----
Confidence 57778888888776 4 489999999998877765 23789999998742 22356787776532
Q ss_pred CCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 240 PDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 240 ~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+. ...+-...+.+.|...+++..
T Consensus 72 -~d~~n~~~~~~~r~~~~~~~ii~~~ 96 (116)
T PF02254_consen 72 -DDEENLLIALLARELNPDIRIIARV 96 (116)
T ss_dssp -SHHHHHHHHHHHHHHTTTSEEEEEE
T ss_pred -CHHHHHHHHHHHHHHCCCCeEEEEE
Confidence 33 234445666677887777754
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.93 E-value=0.19 Score=46.12 Aligned_cols=103 Identities=18% Similarity=0.170 Sum_probs=77.8
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
-++.+|.=||.| .|..+..+|--.++.|+.+|+|..-+.+....+. .++...-.+...+...-.+.|+|+..-.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVL 240 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVL 240 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEE
Confidence 457788999999 5888888888779999999999987776655442 4566666665554323357899987666
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+---..|.-+.+++...+|||+.++=.-.
T Consensus 241 IpgakaPkLvt~e~vk~MkpGsVivDVAi 269 (371)
T COG0686 241 IPGAKAPKLVTREMVKQMKPGSVIVDVAI 269 (371)
T ss_pred ecCCCCceehhHHHHHhcCCCcEEEEEEE
Confidence 66666778889999999999998876543
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.62 Score=43.93 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..|++|++++.++.-++.+++ .|.. .++ |..+. ..+.+|+++.....
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~----~Ga~---~vi--~~~~~--~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA----LGAA---SAG--GAYDT--PPEPLDAAILFAPA 233 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----hCCc---eec--ccccc--CcccceEEEECCCc
Confidence 48899999976 4666677777778899999999988777665 3321 111 11111 12457876543322
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+....+.|++||++++...
T Consensus 234 ------~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 234 ------GGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred ------HHHHHHHHHhhCCCcEEEEEec
Confidence 2478889999999999988764
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.11 Score=47.88 Aligned_cols=107 Identities=19% Similarity=0.241 Sum_probs=72.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---------------------CCEEEEEeCCHH--HHHHHHHHHHHc----------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---------------------GAKCQGITLSPV--QAQRANALAAAR---------- 204 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---------------------~~~v~giD~s~~--~~~~a~~~~~~~---------- 204 (380)
+..+||-||.|.|.-...++..+ ...|+.||+.+- .+......+...
T Consensus 86 ~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~ 165 (315)
T PF11312_consen 86 KSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAA 165 (315)
T ss_pred cCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccc
Confidence 35799999999987555555433 037999998753 333333322222
Q ss_pred CC----C--CCeEEEEcCCCCCCCC-------CCCccEEEeccccCCC-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 205 GL----A--DKVSFQVGDALQQPFP-------DGQFDLVWSMESGEHM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 205 ~~----~--~~v~~~~~d~~~~~~~-------~~~fD~V~~~~~l~~~-----~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+ + -++.|.+.|+..+..+ ....|+|+..+++.-+ ..-.++|..+-..++||..|+|+|-
T Consensus 166 ~~~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDS 243 (315)
T PF11312_consen 166 NWPLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDS 243 (315)
T ss_pred ccccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcC
Confidence 00 1 1478999999886532 1357888888777544 3457899999999999999999984
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.05 Score=41.74 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s 190 (380)
+....+|||||.|.+..-|.+. |..-.|+|.-
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E-Gy~G~GiD~R 89 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE-GYPGWGIDAR 89 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC-CCCccccccc
Confidence 4668999999999999988887 7778888873
|
; GO: 0008168 methyltransferase activity |
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.35 Score=42.72 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
.+.++...++- ++.+...+|+.+||-+|.++|.....+.+-. ..-|++++.|...-......+++. .||.-+.
T Consensus 137 frSKLAA~I~g--GvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR---tNiiPIi 211 (317)
T KOG1596|consen 137 FRSKLAAGILG--GVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR---TNIIPII 211 (317)
T ss_pred HHHHHHHHhhc--CccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc---CCceeee
Confidence 33344444442 2334445679999999999999998888866 357999998875433322222222 4777788
Q ss_pred cCCCCCC---CCCCCccEEEeccccCCCCCHHH-HHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQP---FPDGQFDLVWSMESGEHMPDKSK-FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~-~l~~~~r~LkpgG~l~~~~ 263 (380)
-|+.... ..-.-.|+|++.- - -+|... +.-++...||+||.+++..
T Consensus 212 EDArhP~KYRmlVgmVDvIFaDv-a--qpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 212 EDARHPAKYRMLVGMVDVIFADV-A--QPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred ccCCCchheeeeeeeEEEEeccC-C--CchhhhhhhhhhhhhhccCCeEEEEE
Confidence 8887632 1113466665432 1 134333 3447888999999999975
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.23 Score=44.76 Aligned_cols=92 Identities=24% Similarity=0.244 Sum_probs=61.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD~ 229 (380)
++.+||-+|+|+ |..+..+++..+.+|++++.++...+.++.. +. ..++ +..... ...+.+|+
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~----g~---~~~~--~~~~~~~~~~~~~~~~~~~d~ 204 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKEL----GA---DHVI--DYKEEDLEEELRLTGGGGADV 204 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CC---ceec--cCCcCCHHHHHHHhcCCCCCE
Confidence 488999999985 6677777777789999999998877666432 21 1111 111111 12357999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+.... . ...+..+.+.|+++|.++....
T Consensus 205 vi~~~~-----~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 205 VIDAVG-----G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred EEECCC-----C-HHHHHHHHHhcccCCEEEEEcc
Confidence 885422 1 1457788899999999887653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.36 E-value=0.31 Score=38.86 Aligned_cols=86 Identities=21% Similarity=0.167 Sum_probs=60.8
Q ss_pred CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccEEEeccccCCCCC
Q 016921 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 168 GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~V~~~~~l~~~~~ 241 (380)
|.|..+..+++..|++|+++|.++.-++.+++ .|. ..++..+-.++ . .+...+|+|+-.-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~----~Ga---~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g------ 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE----LGA---DHVIDYSDDDFVEQIRELTGGRGVDVVIDCVG------ 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TTE---SEEEETTTSSHHHHHHHHTTTSSEEEEEESSS------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh----hcc---cccccccccccccccccccccccceEEEEecC------
Confidence 46888999999889999999999998888775 231 22232222211 1 23357999875432
Q ss_pred HHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 242 KSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
....++....+|+++|.+++.....
T Consensus 68 ~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred cHHHHHHHHHHhccCCEEEEEEccC
Confidence 2578999999999999999987543
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.31 E-value=0.025 Score=43.65 Aligned_cols=83 Identities=11% Similarity=0.269 Sum_probs=43.3
Q ss_pred CccEEEeccccCCCC----C--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 226 QFDLVWSMESGEHMP----D--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~----~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
.||+|+|..+.-++. | ...+++.+++.|+|||.+++---.+.... ....... .+........ ..+
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilEpQ~w~sY~-~~~~~~~----~~~~n~~~i~----lrP 71 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILEPQPWKSYK-KAKRLSE----EIRENYKSIK----LRP 71 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE---HHHHH-TTTTS-H----HHHHHHHH--------G
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEeCCCcHHHH-HHhhhhH----HHHhHHhceE----ECh
Confidence 489999988876652 2 35799999999999999999532111100 0011111 1222222222 245
Q ss_pred HHHHHHHHh--CCCcEEEEE
Q 016921 300 ADYVKLLQS--LSLEDIKAE 317 (380)
Q Consensus 300 ~~~~~ll~~--aGf~~v~~~ 317 (380)
+.+.+.|.+ .||..++..
T Consensus 72 ~~F~~~L~~~evGF~~~e~~ 91 (110)
T PF06859_consen 72 DQFEDYLLEPEVGFSSVEEL 91 (110)
T ss_dssp GGHHHHHTSTTT---EEEEE
T ss_pred HHHHHHHHhcccceEEEEEc
Confidence 678888877 599877643
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.53 Score=47.82 Aligned_cols=98 Identities=16% Similarity=0.119 Sum_probs=67.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHH-HHcCC-------CCCeEEEEcCCCCCCCCC--
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALA-AARGL-------ADKVSFQVGDALQQPFPD-- 224 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~-~~~~~-------~~~v~~~~~d~~~~~~~~-- 224 (380)
..|+-+|+|-|-+.....+.. ..+|++|+-++........+. ....+ .++|+++..|+..+..+.
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~ 781 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN 781 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence 468999999999876665543 358999999966544444442 21223 246999999999874321
Q ss_pred ---------CCccEEEeccccCCCCCH---HHHHHHHHHhcCC----CcE
Q 016921 225 ---------GQFDLVWSMESGEHMPDK---SKFVSELARVTAP----AGT 258 (380)
Q Consensus 225 ---------~~fD~V~~~~~l~~~~~~---~~~l~~~~r~Lkp----gG~ 258 (380)
+++|+||+ ..|.-+.|- .+.|..+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPECLDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPECLEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHHHHHHHHhhhhhcccccc
Confidence 37998875 555555543 5788888888887 776
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=93.28 E-value=0.8 Score=44.54 Aligned_cols=100 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.++.+++..++. .++.+|+=+|+|. |......++..|++|+++|.++.-++.|+. .| .... +..+
T Consensus 188 ~~~~i~r~t~~~----l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~----~G----~~~~--~~~e 253 (413)
T cd00401 188 LIDGIKRATDVM----IAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM----EG----YEVM--TMEE 253 (413)
T ss_pred hHHHHHHhcCCC----CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh----cC----CEEc--cHHH
Confidence 445555554432 2589999999994 766676777668999999999987776654 23 2211 1111
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHH-HHHhcCCCcEEEEEe
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSE-LARVTAPAGTIIIVT 263 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~-~~r~LkpgG~l~~~~ 263 (380)
. . ...|+|+.... .. .++.. ..+.+|+||+++...
T Consensus 254 ~-v--~~aDVVI~atG-----~~-~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 254 A-V--KEGDIFVTTTG-----NK-DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred H-H--cCCCEEEECCC-----CH-HHHHHHHHhcCCCCcEEEEeC
Confidence 1 1 35798886432 23 34554 589999999998765
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.61 Score=44.39 Aligned_cols=91 Identities=21% Similarity=0.317 Sum_probs=59.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeC---CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITL---SPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~---s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~ 229 (380)
++.+||=+|+| .|..+..+++..+++|++++. ++.-++.+++ .|. .++ +..+.. ...+.+|+
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~----~Ga----~~v--~~~~~~~~~~~~~~~~d~ 241 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEE----LGA----TYV--NSSKTPVAEVKLVGEFDL 241 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHH----cCC----EEe--cCCccchhhhhhcCCCCE
Confidence 47899999987 477777788877889999987 5666665543 332 222 111111 01246888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... . ...+.++.+.|++||.+++...
T Consensus 242 vid~~g-----~-~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 242 IIEATG-----V-PPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EEECcC-----C-HHHHHHHHHHccCCcEEEEEec
Confidence 875432 1 2467889999999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.34 Score=46.96 Aligned_cols=107 Identities=12% Similarity=0.075 Sum_probs=66.8
Q ss_pred CCEEEEECCCcCh--HHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CCCCC-CCCccEEEe
Q 016921 159 PKNVVDVGCGIGG--SSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQPFP-DGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~--~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~~~~-~~~fD~V~~ 232 (380)
+..++|+|.|.|. ++....... ...++.||.+..|+...........-...+.+...-+. .+|.. .+.||+|++
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~ 280 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVIC 280 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEe
Confidence 6678888888654 444443332 46799999999999988776643100001111110111 12433 355999999
Q ss_pred ccccCCCCCH---HHHHH-HHHHhcCCCcEEEEEecc
Q 016921 233 MESGEHMPDK---SKFVS-ELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 233 ~~~l~~~~~~---~~~l~-~~~r~LkpgG~l~~~~~~ 265 (380)
.+.++++... ..+.+ -..+..++|+.+++.+-+
T Consensus 281 ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 281 AHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999998653 33333 455667899999998854
|
|
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.93 E-value=2.8 Score=38.66 Aligned_cols=182 Identities=12% Similarity=0.087 Sum_probs=90.8
Q ss_pred ccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH
Q 016921 116 DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV 192 (380)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~ 192 (380)
+.++.|||. .-.+....+...+.... ....|+.+|||.-.....|...+ ...++=||.++.
T Consensus 61 P~inRGy~~---------R~~aI~~~v~~Fl~~~~-------~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~ 124 (335)
T KOG2918|consen 61 PEINRGYWA---------RTMAIRHAVRAFLEQTD-------GKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEV 124 (335)
T ss_pred ceecchhhH---------HHHHHHHHHHHHHHhcC-------CceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHH
Confidence 345566664 22333445555555522 26789999999999888888765 245666666655
Q ss_pred HHHHHHHHHHHcCC---------------------CCCeEEEEcCCCCCC----------CCCCCccEEEeccccCCCC-
Q 016921 193 QAQRANALAAARGL---------------------ADKVSFQVGDALQQP----------FPDGQFDLVWSMESGEHMP- 240 (380)
Q Consensus 193 ~~~~a~~~~~~~~~---------------------~~~v~~~~~d~~~~~----------~~~~~fD~V~~~~~l~~~~- 240 (380)
....... ..+..+ .++-..+-.|+.++. ...+-.-++++-.++.+++
T Consensus 125 ~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~p 203 (335)
T KOG2918|consen 125 VERKISI-KRKPELSSILLGLHDEDVVDLSGTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEP 203 (335)
T ss_pred HHHHHhh-cccCchhhhhhccccccccccCcceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccH
Confidence 4433311 100000 011122222332210 0011122233334455552
Q ss_pred C-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH-hhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 241 D-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI-CDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 241 ~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+ -..+++.+...... +.+++.+... ....+...+...+... ....++..+.+.+..++-+.++||+-+.+.+
T Consensus 204 e~S~~Li~w~~~~F~~-a~fv~YEQi~-----~~D~Fg~vM~~nlk~r~~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~D 277 (335)
T KOG2918|consen 204 EESANLIKWAASKFEN-AHFVNYEQIN-----PNDRFGKVMLANLKRRGCPLHGLETYNSIESQRSRFLKAGWEYVIAVD 277 (335)
T ss_pred HHHHHHHHHHHHhCCc-ccEEEEeccC-----CCChHHHHHHHHHHhcCCCCchhhhcccHHHHHHHHHhcCCceeehhh
Confidence 2 23456666665544 4444444322 1123344343333322 1122333567899999999999999887654
Q ss_pred cC
Q 016921 319 WS 320 (380)
Q Consensus 319 ~~ 320 (380)
..
T Consensus 278 m~ 279 (335)
T KOG2918|consen 278 MN 279 (335)
T ss_pred HH
Confidence 43
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.33 Score=44.66 Aligned_cols=66 Identities=23% Similarity=0.146 Sum_probs=49.1
Q ss_pred EEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC--CCCccEEEecc
Q 016921 161 NVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP--DGQFDLVWSME 234 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--~~~fD~V~~~~ 234 (380)
+|+|+-||.|.+...+.+. |. .+.++|+++...+..+.+.. .. ++.+|+.++... ...+|+|+...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G~~~v~a~e~~~~a~~~~~~N~~------~~-~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-GFEIVAANEIDKSAAETYEANFP------NK-LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHc-CCEEEEEEeCCHHHHHHHHHhCC------CC-CccCccccCchhhcCCCCCEEEeCC
Confidence 6999999999998888775 44 46789999999888776552 12 566777776422 35799998754
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.39 E-value=0.91 Score=42.72 Aligned_cols=93 Identities=25% Similarity=0.296 Sum_probs=60.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~~~~~~~fD~V~~ 232 (380)
++.+||-.|+|. |..+..+++..|. .+++++.++...+.+++ .+. . .++..+ ........+.+|+|+.
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~g~-~--~vi~~~~~~~~~~~~~~~~vd~vld 237 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----MGA-D--ETVNLARDPLAAYAADKGDFDVVFE 237 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----cCC-C--EEEcCCchhhhhhhccCCCccEEEE
Confidence 478898888875 6677778887777 79999999888775544 222 1 122111 1111111245898886
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.... ...++.+.+.|+++|+++...
T Consensus 238 ~~g~------~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 238 ASGA------PAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred CCCC------HHHHHHHHHHHhcCCEEEEEe
Confidence 4321 346788999999999988754
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.11 Score=47.22 Aligned_cols=102 Identities=19% Similarity=0.171 Sum_probs=73.1
Q ss_pred CCCEEEEECCCcChHHH-HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSR-YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~-~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+..|+|+=.|-|.+++ .+.......|+++|.+|..++..++.+..+++..+..++.+|-... -++...|.|...
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~~~~~AdrVnLG--- 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-KPRLRADRVNLG--- 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-Cccccchheeec---
Confidence 36789999999999998 5555435689999999999999999988887766677777776554 356788888753
Q ss_pred CCCCCHHHHHHHHHHhcCCCc--EEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAG--TIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG--~l~~~~~ 264 (380)
-+|.-++---.+..+|||.| .+-+.+.
T Consensus 270 -LlPSse~~W~~A~k~Lk~eggsilHIHen 298 (351)
T KOG1227|consen 270 -LLPSSEQGWPTAIKALKPEGGSILHIHEN 298 (351)
T ss_pred -cccccccchHHHHHHhhhcCCcEEEEecc
Confidence 23443444445666777754 4445443
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.42 E-value=1 Score=42.91 Aligned_cols=94 Identities=19% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|+ +|+++|.++...+.+++ .|. -.++...-.+. ......+|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~Ga---~~~i~~~~~~~~~~i~~~~~~~g~d~ 248 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----FGA---THTVNSSGTDPVEAIRALTGGFGADV 248 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCC---ceEEcCCCcCHHHHHHHHhCCCCCCE
Confidence 48899999886 46677777887777 59999999988887754 232 11121111110 012245898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-. . ...++.+.+.+++||++++...
T Consensus 249 vid~~g-----~-~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 249 VIDAVG-----R-PETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EEECCC-----C-HHHHHHHHHHhccCCEEEEECC
Confidence 874321 2 2467788899999999988653
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=91.40 E-value=1.2 Score=41.54 Aligned_cols=86 Identities=20% Similarity=0.296 Sum_probs=57.1
Q ss_pred CCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+||=+||| .|.++..+++..|++ |+++|.++..++.+.+. . + .|..+. ....+|+|+-...
T Consensus 145 ~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~----~------~--i~~~~~--~~~g~Dvvid~~G- 209 (308)
T TIGR01202 145 VLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY----E------V--LDPEKD--PRRDYRAIYDASG- 209 (308)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc----c------c--cChhhc--cCCCCCEEEECCC-
Confidence 6678888987 577778888877765 67789888776655431 1 1 111111 1346898875422
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ...++.+.+.|++||++++.-.
T Consensus 210 ----~-~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ----D-PSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ----C-HHHHHHHHHhhhcCcEEEEEee
Confidence 1 3467889999999999998754
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.01 E-value=2.1 Score=40.56 Aligned_cols=92 Identities=15% Similarity=0.173 Sum_probs=59.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHH-c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKK-F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~-~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+||=+||| .|..+..++++ . +.+|+++|.++.-++.+++ .+ .. ... + ++. ....+|+|+-.-
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~----~~---~~-~~~-~--~~~-~~~g~d~viD~~ 230 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF----AD---ET-YLI-D--DIP-EDLAVDHAFECV 230 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh----cC---ce-eeh-h--hhh-hccCCcEEEECC
Confidence 48899999987 45566666665 3 4689999999988777754 11 11 111 1 111 112488887432
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. . ......+....+.|++||++++...
T Consensus 231 G--~-~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G--G-RGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C--C-CccHHHHHHHHHhCcCCcEEEEEee
Confidence 2 1 0124578889999999999988754
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.4 Score=42.30 Aligned_cols=94 Identities=19% Similarity=0.205 Sum_probs=60.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.++..++.+++ .|. ..++..+-.+. ....+.+|+|
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~Ga---~~~i~~~~~~~~~~i~~~~~~g~d~v 263 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----LGA---TATVNAGDPNAVEQVRELTGGGVDYA 263 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----cCC---ceEeCCCchhHHHHHHHHhCCCCCEE
Confidence 47888889987 46677777777787 69999999998887764 232 11121111111 0112368888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... . ...+..+.+.|++||.+++...
T Consensus 264 id~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 264 FEMAG-----S-VPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred EECCC-----C-hHHHHHHHHHHhcCCEEEEEcc
Confidence 74321 1 3567888899999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=90.53 E-value=0.68 Score=40.32 Aligned_cols=44 Identities=16% Similarity=0.111 Sum_probs=33.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHH
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALA 201 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~---~~v~giD~s~~~~~~a~~~~ 201 (380)
.+.++-|-.||.|.+.-.+.-..+ ..|+|.|+++++++.|++++
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL 97 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNL 97 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHH
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhh
Confidence 377999999999998877655432 57999999999999998865
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.92 Score=42.73 Aligned_cols=94 Identities=20% Similarity=0.228 Sum_probs=59.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~V 230 (380)
++.+||=+|+| .|..+..+++..|++ |+++|.+++..+.+++ .|.. .++...-. .+ . .....+|+|
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~----~ga~---~~i~~~~~~~~~~~~~~~~~~~d~v 235 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA----LGAD---FVINSGQDDVQEIRELTSGAGADVA 235 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCCcchHHHHHHHhCCCCCCEE
Confidence 38889888876 456666777777877 9999999988777654 2321 11111100 01 0 123468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... ....+..+.+.|+++|++++...
T Consensus 236 id~~g------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 236 IECSG------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred EECCC------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 74321 13456778899999999987653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=90.30 E-value=6 Score=34.84 Aligned_cols=102 Identities=17% Similarity=0.115 Sum_probs=63.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|++ |.++..+++.+ |.+|++++.++...+...+..... .++.++.+|+.+.. + .-+
T Consensus 5 ~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 5 GKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 6788888875 55555555544 889999999987666554444332 25788889987632 0 013
Q ss_pred CccEEEeccccCCCC---C--------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMP---D--------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~---~--------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|.++......... + ...+++.+...++++|.+++...
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 568777655432211 1 11245666677788888777653
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=90.20 E-value=3.1 Score=38.90 Aligned_cols=94 Identities=18% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~ 231 (380)
++.+||-+|+| .|..+..+++..|.+ +++++.+++..+.+++ .+.. .++..+-.+. ....+.+|+|+
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~~~~~~~~~~~~~~~~~~~vd~v~ 231 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK----LGAT---ETVDPSREDPEAQKEDNPYGFDVVI 231 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCCe---EEecCCCCCHHHHHHhcCCCCcEEE
Confidence 47899999876 366777777777776 8999999888776643 2321 2222111111 11245689988
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.... ....+.++.+.|+++|+++....
T Consensus 232 ~~~~------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 232 EATG------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred ECCC------ChHHHHHHHHHHhcCCEEEEEec
Confidence 5421 13578888999999999887654
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.90 E-value=5 Score=38.08 Aligned_cols=94 Identities=14% Similarity=0.073 Sum_probs=61.9
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CCCC-C-CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DALQ-Q-PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~~~-~-~~~~~~fD~ 229 (380)
++.+||=.|+ |.|..+..+++..|++|++++.++...+.+++. .|.. .++.. +..+ + ....+.+|+
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~---lGa~---~vi~~~~~~~~~~~i~~~~~~gvD~ 231 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNK---LGFD---EAFNYKEEPDLDAALKRYFPEGIDI 231 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHh---cCCC---EEEECCCcccHHHHHHHHCCCCcEE
Confidence 4889999987 378888888888899999999998877766532 2321 12211 1110 0 011246888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... ...+..+.+.|++||++++...
T Consensus 232 v~d~vG-------~~~~~~~~~~l~~~G~iv~~G~ 259 (348)
T PLN03154 232 YFDNVG-------GDMLDAALLNMKIHGRIAVCGM 259 (348)
T ss_pred EEECCC-------HHHHHHHHHHhccCCEEEEECc
Confidence 874321 2467889999999999987653
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=89.89 E-value=3.5 Score=37.37 Aligned_cols=92 Identities=25% Similarity=0.314 Sum_probs=59.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=.|+|. |..+..+++..+.+ |++++.+++..+.+++. |....+ ... .........+|+|+....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~----g~~~~~--~~~--~~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEAL----GPADPV--AAD--TADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHc----CCCccc--ccc--chhhhcCCCCCEEEEccC
Confidence 488898888874 77777788877777 99999999887766542 211111 110 000112356898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ...+....+.|+++|.++...
T Consensus 169 ~------~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 169 S------PSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C------hHHHHHHHHHhcCCcEEEEEe
Confidence 1 246788899999999988754
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=89.74 E-value=0.22 Score=39.73 Aligned_cols=76 Identities=24% Similarity=0.338 Sum_probs=48.5
Q ss_pred eEEEEcCCCCC-CCCCCCccEEEeccccCCCCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHH
Q 016921 210 VSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELL 284 (380)
Q Consensus 210 v~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (380)
+.+..+|+.+. +--...||+|+... +.--.++ ..++++++++++|||.+.-..
T Consensus 33 L~L~~gDa~~~l~~l~~~~Da~ylDg-FsP~~nPelWs~e~~~~l~~~~~~~~~l~Tys--------------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLPQLDARFDAWYLDG-FSPAKNPELWSEELFKKLARLSKPGGTLATYS--------------------- 90 (124)
T ss_dssp EEEEES-HHHHHHHB-T-EEEEEE-S-S-TTTSGGGSSHHHHHHHHHHEEEEEEEEES----------------------
T ss_pred EEEEEcHHHHHHHhCcccCCEEEecC-CCCcCCcccCCHHHHHHHHHHhCCCcEEEEee---------------------
Confidence 55667776542 21136899888754 2222233 689999999999999776532
Q ss_pred HHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 285 KKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
....++..|+++||.+.....+.
T Consensus 91 -------------~a~~Vr~~L~~aGF~v~~~~g~g 113 (124)
T PF05430_consen 91 -------------SAGAVRRALQQAGFEVEKVPGFG 113 (124)
T ss_dssp --------------BHHHHHHHHHCTEEEEEEE-ST
T ss_pred -------------chHHHHHHHHHcCCEEEEcCCCC
Confidence 23468899999999998877664
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.9 Score=39.03 Aligned_cols=102 Identities=18% Similarity=0.168 Sum_probs=68.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD---GQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~~~ 233 (380)
.+..|+-+| -.-..+++++-.. ..+|..+|+++..+....+.+.+.|+ .+++.+..|+.+ |+|+ ++||+.+.
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~-~~ie~~~~Dlr~-plpe~~~~kFDvfiT- 227 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGY-NNIEAFVFDLRN-PLPEDLKRKFDVFIT- 227 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCc-cchhheeehhcc-cChHHHHhhCCeeec-
Confidence 367899998 3333444444322 67999999999999999999988887 579999999887 4443 68997764
Q ss_pred cccCCCCCHHHHHHHHHHhcCCC---cEEEEEe
Q 016921 234 ESGEHMPDKSKFVSELARVTAPA---GTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~Lkpg---G~l~~~~ 263 (380)
.--+.+.-...++..=...||.. |++.++.
T Consensus 228 DPpeTi~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 228 DPPETIKALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred CchhhHHHHHHHHhccHHHhcCCCccceEeeee
Confidence 22222222344555555666655 6666653
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.59 E-value=3.8 Score=37.49 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCC-C-C-CCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ-Q-P-FPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~-~-~-~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|++ |+++|.++.-++.+++ .|.. .++. .+... . . .....+|+|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~~~~~g~d~vi 192 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----FGAT---ALAEPEVLAERQGGLQNGRGVDVAL 192 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----cCCc---EecCchhhHHHHHHHhCCCCCCEEE
Confidence 47889999886 466667777777775 9999999887777655 2321 1111 01000 0 0 1224588887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-... ....++.+.+.|+++|++++...
T Consensus 193 d~~G------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC------ChHHHHHHHHHhcCCCEEEEecc
Confidence 4321 13568889999999999988763
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.25 Score=47.24 Aligned_cols=61 Identities=23% Similarity=0.182 Sum_probs=52.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQ 219 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~ 219 (380)
++..|.|+-||.|-++..++.+ ++.|++.|+++++++..+..++.+.+.+. ++.+..|+..
T Consensus 249 ~gevv~D~FaGvGPfa~Pa~kK-~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 249 PGEVVCDVFAGVGPFALPAAKK-GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred CcchhhhhhcCcCccccchhhc-CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 5889999999999999999988 79999999999999999998877665444 8888777654
|
|
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=89.15 E-value=5.5 Score=37.14 Aligned_cols=93 Identities=19% Similarity=0.180 Sum_probs=60.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~ 235 (380)
++.+||-+|+| .|..+..+++..|.+|++++.++...+.+++ .+. ..++...-.... -..+.+|+++....
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~----~g~---~~~~~~~~~~~~~~~~~~~d~vi~~~~ 234 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARK----LGA---DEVVDSGAELDEQAAAGGADVILVTVV 234 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----hCC---cEEeccCCcchHHhccCCCCEEEECCC
Confidence 47889999987 6777777777778899999999988777643 121 111111100000 01246898875321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...+..+.+.|+++|.++...
T Consensus 235 -----~-~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 235 -----S-GAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred -----c-HHHHHHHHHhcccCCEEEEEC
Confidence 1 246788899999999988765
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.14 E-value=0.75 Score=44.22 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=57.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+=+|+| .|..+...+...|++|+++|.++..++.+.... + ..+.....+...+.-.-..+|+|+..-.+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~---g--~~v~~~~~~~~~l~~~l~~aDvVI~a~~~ 240 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEF---G--GRIHTRYSNAYEIEDAVKRADLLIGAVLI 240 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhc---C--ceeEeccCCHHHHHHHHccCCEEEEcccc
Confidence 36779999998 577777777767889999999987665543322 1 11211111111111001468999865322
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..-+.+.-+-++..+.++||+.++-.-.
T Consensus 241 ~g~~~p~lit~~~l~~mk~g~vIvDva~ 268 (370)
T TIGR00518 241 PGAKAPKLVSNSLVAQMKPGAVIVDVAI 268 (370)
T ss_pred CCCCCCcCcCHHHHhcCCCCCEEEEEec
Confidence 1111122123566677899988776443
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only] | Back alignment and domain information |
|---|
Probab=89.08 E-value=1.2 Score=44.57 Aligned_cols=91 Identities=18% Similarity=0.244 Sum_probs=59.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----C----CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----P----FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~----~~~~~f 227 (380)
++..|||+||-.|.|.....+.. +.-|+|+|+-|.- ..+++.-.+.|+... + ....+.
T Consensus 44 ~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pik------------p~~~c~t~v~dIttd~cr~~l~k~l~t~~a 111 (780)
T KOG1098|consen 44 KAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPIK------------PIPNCDTLVEDITTDECRSKLRKILKTWKA 111 (780)
T ss_pred ccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeecc------------cCCccchhhhhhhHHHHHHHHHHHHHhCCC
Confidence 47889999999999999988876 6789999997742 224555555555431 1 223445
Q ss_pred cEEEeccccCCCC-----CH-------HHHHHHHHHhcCCCcEEEE
Q 016921 228 DLVWSMESGEHMP-----DK-------SKFVSELARVTAPAGTIII 261 (380)
Q Consensus 228 D~V~~~~~l~~~~-----~~-------~~~l~~~~r~LkpgG~l~~ 261 (380)
|+|+.-+ .+++. |. -..++-+...|+.||.++-
T Consensus 112 dvVLhDg-apnVg~~w~~DA~~q~~L~l~al~LA~~~l~~~g~fvt 156 (780)
T KOG1098|consen 112 DVVLHDG-APNVGGNWVQDAFQQACLTLRALKLATEFLAKGGTFVT 156 (780)
T ss_pred cEEeecC-CCccchhHHHHHHHhhHHHHHHHHHHHHHHHhcCcccc
Confidence 7776533 33331 11 2356677888999999443
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=5.1 Score=36.21 Aligned_cols=73 Identities=29% Similarity=0.251 Sum_probs=48.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |+.|++++.++..++...+.....+ .++.++..|+.+.. + ..+
T Consensus 9 ~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~~ 85 (264)
T PRK07576 9 GKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEFG 85 (264)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 67788887 4556666655544 7899999999877665544444332 35678888987631 0 124
Q ss_pred CccEEEecc
Q 016921 226 QFDLVWSME 234 (380)
Q Consensus 226 ~fD~V~~~~ 234 (380)
.+|.++.+.
T Consensus 86 ~iD~vi~~a 94 (264)
T PRK07576 86 PIDVLVSGA 94 (264)
T ss_pred CCCEEEECC
Confidence 689988654
|
|
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=88.79 E-value=1.1 Score=42.08 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=61.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----C--CCCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q--PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~--~~~~~~fD~V 230 (380)
++.+||-.|+|. |..+..+++..|.+|+++..+++..+..++. +. ..++...-.. + ..+...+|+|
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~----g~---~~v~~~~~~~~~~~l~~~~~~~~vd~v 231 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFAREL----GA---DDTINVGDEDVAARLRELTDGEGADVV 231 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHh----CC---CEEecCcccCHHHHHHHHhCCCCCCEE
Confidence 478999998774 7788888888799999998888877766432 21 1112111111 0 1133568998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.... ....+.++.+.|+++|.++...
T Consensus 232 ld~~g------~~~~~~~~~~~l~~~G~~i~~g 258 (337)
T cd08261 232 IDATG------NPASMEEAVELVAHGGRVVLVG 258 (337)
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEEc
Confidence 86421 1346788899999999988654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=88.51 E-value=4.7 Score=39.18 Aligned_cols=87 Identities=17% Similarity=0.191 Sum_probs=56.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=+|+|. |......++.+|++|+++|.++.....+.. .| ..+. +.++. . ...|+|+....
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~----~G----~~v~--~leea-l--~~aDVVItaTG- 259 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAM----DG----FRVM--TMEEA-A--KIGDIFITATG- 259 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHh----cC----CEeC--CHHHH-H--hcCCEEEECCC-
Confidence 488999999994 666666677668999999999865443332 22 2221 22221 1 34698876422
Q ss_pred CCCCCHHHHHH-HHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVS-ELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~~~~ 263 (380)
. ..++. +....+|+|++++...
T Consensus 260 ----~-~~vI~~~~~~~mK~GailiN~G 282 (406)
T TIGR00936 260 ----N-KDVIRGEHFENMKDGAIVANIG 282 (406)
T ss_pred ----C-HHHHHHHHHhcCCCCcEEEEEC
Confidence 2 33444 5889999999988865
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=88.09 E-value=1.4 Score=39.73 Aligned_cols=105 Identities=22% Similarity=0.216 Sum_probs=58.6
Q ss_pred CCEEEEECCCcChHHHHHHHH---c---CCEEEEEeCCH--------------------------HHHHHHHHHHHHcCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK---F---GAKCQGITLSP--------------------------VQAQRANALAAARGL 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~---~~~v~giD~s~--------------------------~~~~~a~~~~~~~~~ 206 (380)
+..|+|+||-.|..+..++.. + +.++.+.|.-. ..++..++++...|+
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 678999999999877655432 2 34688887311 123344444443343
Q ss_pred -CCCeEEEEcCCCCC-C-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 207 -ADKVSFQVGDALQQ-P-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 207 -~~~v~~~~~d~~~~-~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+++.++.+.+.+. | .+.+++-++.+-.=++ .....+|..++..|.|||++++-++.
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY--esT~~aLe~lyprl~~GGiIi~DDY~ 214 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY--ESTKDALEFLYPRLSPGGIIIFDDYG 214 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--EEEEEE---SH--HHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred CcccEEEECCcchhhhccCCCccEEEEEEeccch--HHHHHHHHHHHhhcCCCeEEEEeCCC
Confidence 45899999998652 3 2233333332221111 22367899999999999999998754
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=8.7 Score=33.78 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=+| |+|.++..+++.+ |.+|++++.++.......+.+... .++.++.+|+.+.. +. .+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 81 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRDEADVQRAVDAIVAAFG 81 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 56788888 4677777766655 789999999887665554444322 36888899987631 10 13
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|.|+......
T Consensus 82 ~~d~vi~~ag~~ 93 (237)
T PRK07326 82 GLDVLIANAGVG 93 (237)
T ss_pred CCCEEEECCCCC
Confidence 689888765443
|
|
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.75 E-value=3.1 Score=39.36 Aligned_cols=94 Identities=21% Similarity=0.264 Sum_probs=58.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---C--CCCCCCcc-E
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---Q--PFPDGQFD-L 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~--~~~~~~fD-~ 229 (380)
++.+||=.|+| .|..+..+++..|++ |+++|.+++..+.+++ .|. ..++..+-.. + ......+| +
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~----~Ga---~~~i~~~~~~~~~~~~~~~~~~~d~~ 232 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS----LGA---MQTFNSREMSAPQIQSVLRELRFDQL 232 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC---ceEecCcccCHHHHHHHhcCCCCCeE
Confidence 47899999886 466777777777776 7899999988776643 232 1111111000 0 01224577 5
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.- .. ...+....+.|++||.+++...
T Consensus 233 v~d~~-----G~-~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 233 ILETA-----GV-PQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEECC-----CC-HHHHHHHHHHhhcCCEEEEEcc
Confidence 44211 11 3578889999999999988754
|
|
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=87.67 E-value=3.6 Score=39.03 Aligned_cols=97 Identities=16% Similarity=0.215 Sum_probs=58.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCcc--
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFD-- 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD-- 228 (380)
++.+||=+|+|. |..+..+++..|.+|+++|.++..++.+++. |...-+.....+..++ . .....+|
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~----Ga~~~i~~~~~~~~~~~~~~~~~t~~~g~d~~ 241 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGF----GADLTLNPKDKSAREVKKLIKAFAKARGLRST 241 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHh----CCceEecCccccHHHHHHHHHhhcccCCCCCC
Confidence 488999999974 7777778887788999999999988877542 3210011111010010 0 0112344
Q ss_pred --EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 --LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 --~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.|+- .... ...++.+.+.|++||++++...
T Consensus 242 ~d~v~d-----~~g~-~~~~~~~~~~l~~~G~iv~~G~ 273 (349)
T TIGR03201 242 GWKIFE-----CSGS-KPGQESALSLLSHGGTLVVVGY 273 (349)
T ss_pred cCEEEE-----CCCC-hHHHHHHHHHHhcCCeEEEECc
Confidence 4432 1111 3467778899999999988764
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.36 E-value=10 Score=35.26 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=60.7
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||=.| .|.|..+..+++..|++|++++.+++..+.+++ .|. -.++...-.+. ....+.+|+|
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~----~Ga---~~vi~~~~~~~~~~v~~~~~~gvd~v 215 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE----LGF---DAVFNYKTVSLEEALKEAAPDGIDCY 215 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC---CEEEeCCCccHHHHHHHHCCCCcEEE
Confidence 488898887 356778888888889999999999987777654 232 11221111111 1112468888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... ...+....+.|+++|+++...
T Consensus 216 ld~~g-------~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 216 FDNVG-------GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EECCC-------HHHHHHHHHhhccCCEEEEEc
Confidence 74321 246788999999999988754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.6 Score=41.20 Aligned_cols=94 Identities=20% Similarity=0.181 Sum_probs=59.1
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCcc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD 228 (380)
.++.+||-.|+| .|..+..+++..+. .+++++.++...+.+++. +. ..++...-.++ -.+.+.+|
T Consensus 166 ~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~i~~~~~~~~~d 238 (347)
T cd05278 166 KPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEA----GA---TDIINPKNGDIVEQILELTGGRGVD 238 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHh----CC---cEEEcCCcchHHHHHHHHcCCCCCc
Confidence 357888888876 47777778887774 889998888776665532 21 11221111111 01235799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-...- ...+.+..+.|+++|+++...
T Consensus 239 ~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 239 CVIEAVGF------EETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEEccCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 88753211 247888999999999988654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=87.26 E-value=5.8 Score=37.05 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=60.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCC-----CCCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQ-----PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~-----~~~~~~fD~ 229 (380)
++.+||=.|. |.|..+..+++..|.+|++++.+++..+.+++ .|. . .++..+- ... ....+.+|+
T Consensus 138 ~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~----lGa-~--~vi~~~~~~~~~~~~~~~~~~gvdv 210 (325)
T TIGR02825 138 GGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK----LGF-D--VAFNYKTVKSLEETLKKASPDGYDC 210 (325)
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC-C--EEEeccccccHHHHHHHhCCCCeEE
Confidence 4889988883 47888888888878999999999887777654 232 1 1121111 011 112346888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-.. . ...+..+.++|++||+++...
T Consensus 211 v~d~~-----G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 211 YFDNV-----G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEECC-----C--HHHHHHHHHHhCcCcEEEEec
Confidence 87422 1 134688999999999999764
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=87.16 E-value=2.1 Score=41.24 Aligned_cols=45 Identities=18% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
++.+||-|++|.......+... ..+|++||+||.++...+-+.+.
T Consensus 35 ~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlAa 79 (380)
T PF11899_consen 35 PDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLAA 79 (380)
T ss_pred CCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHHH
Confidence 4899999987765555555543 78999999999999887766543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=87.07 E-value=11 Score=34.61 Aligned_cols=79 Identities=16% Similarity=0.050 Sum_probs=56.7
Q ss_pred CCCCEEEEECCCcCh---HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 016921 157 KRPKNVVDVGCGIGG---SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~---~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (380)
-.+..||==|.|.|. .+..+|++ ++.++..|++..-...-.+.+++.| ++.....|..+.. -+
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~r-g~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e 111 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKR-GAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKE 111 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHh-CCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHh
Confidence 457788888888764 44445554 8899999999988777777666554 6888899987742 23
Q ss_pred CCCccEEEeccccCCC
Q 016921 224 DGQFDLVWSMESGEHM 239 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~ 239 (380)
-+..|+++.+.++-+.
T Consensus 112 ~G~V~ILVNNAGI~~~ 127 (300)
T KOG1201|consen 112 VGDVDILVNNAGIVTG 127 (300)
T ss_pred cCCceEEEeccccccC
Confidence 4678999887666544
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.98 E-value=2.7 Score=40.21 Aligned_cols=94 Identities=23% Similarity=0.250 Sum_probs=56.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=.|+| .|..+..+++..|+++++++.+......+. ++.|. ..++. .+...+....+.+|+|+-...
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~---~~~Ga---~~vi~~~~~~~~~~~~~~~D~vid~~g 256 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAI---NRLGA---DSFLVSTDPEKMKAAIGTMDYIIDTVS 256 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHH---HhCCC---cEEEcCCCHHHHHhhcCCCCEEEECCC
Confidence 47888889987 577777788877889999988765432221 12232 11111 110011000124788774322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...++.+.+.|++||++++..
T Consensus 257 -----~-~~~~~~~~~~l~~~G~iv~vG 278 (360)
T PLN02586 257 -----A-VHALGPLLGLLKVNGKLITLG 278 (360)
T ss_pred -----C-HHHHHHHHHHhcCCcEEEEeC
Confidence 1 236788899999999998765
|
|
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.75 E-value=7.3 Score=40.80 Aligned_cols=101 Identities=23% Similarity=0.224 Sum_probs=63.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+++|.++..++.+.+.+... .++.++.+|+.+.. + ..+
T Consensus 422 gk~vLVTGa-sggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 422 GKVALVTGA-AGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCEEEEecC-CCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 567887775 455555555544 789999999987766655444322 36888888987632 1 124
Q ss_pred CccEEEeccccCCCCC-------------------HHHHHHHHHHhcCC---CcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPD-------------------KSKFVSELARVTAP---AGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~-------------------~~~~l~~~~r~Lkp---gG~l~~~~ 263 (380)
.+|+|+.+........ ...+++.+.+.+++ ||.+++..
T Consensus 498 ~iDvvI~~AG~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 498 GVDIVVSNAGIAISGPIEETSDEDWRRSFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 6899887665432211 12456666777766 67777754
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.73 E-value=3.1 Score=41.06 Aligned_cols=101 Identities=17% Similarity=0.176 Sum_probs=63.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.++.+++..++. ..+.+|+=+|+| .|......++.+|++|+++|.++.....+.. .| ..+. +..+
T Consensus 240 ~~d~i~r~t~i~----LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~----~G----~~vv--~leE 305 (477)
T PLN02494 240 LPDGLMRATDVM----IAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALM----EG----YQVL--TLED 305 (477)
T ss_pred HHHHHHHhcCCc----cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHh----cC----Ceec--cHHH
Confidence 455666554432 248999999999 3655555555568999999999865443322 22 2211 2222
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. + ...|+|+....- ..-+..+....+|+||.|+...
T Consensus 306 a-l--~~ADVVI~tTGt-----~~vI~~e~L~~MK~GAiLiNvG 341 (477)
T PLN02494 306 V-V--SEADIFVTTTGN-----KDIIMVDHMRKMKNNAIVCNIG 341 (477)
T ss_pred H-H--hhCCEEEECCCC-----ccchHHHHHhcCCCCCEEEEcC
Confidence 1 1 357988874322 2223478888999999999875
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.66 E-value=5.5 Score=35.31 Aligned_cols=75 Identities=19% Similarity=0.134 Sum_probs=50.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=.| |+|..+..+++.+ |.+|++++.++..+....+.+...+ .++.++.+|+.+.. +. -+
T Consensus 7 ~~~vlItG-a~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 83 (250)
T PRK12939 7 GKRALVTG-AARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAALG 83 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 67788666 5667777776655 7899999998877666555544333 46888999987642 10 14
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 84 ~id~vi~~ag~ 94 (250)
T PRK12939 84 GLDGLVNNAGI 94 (250)
T ss_pred CCCEEEECCCC
Confidence 68988876544
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.38 E-value=8.8 Score=34.58 Aligned_cols=72 Identities=15% Similarity=0.212 Sum_probs=46.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.++|=.|+ +|.++..+++.+ |.+|+.+|.++..++...+.. + .++.++.+|+.+.. + .-+
T Consensus 6 ~k~vlItGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 6 GKVAIVTGG-ATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL---G--ERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 567777774 555666666554 889999999876554433322 2 46888899987642 1 114
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|.++.+...
T Consensus 80 ~id~lv~~ag~ 90 (261)
T PRK08265 80 RVDILVNLACT 90 (261)
T ss_pred CCCEEEECCCC
Confidence 68988876543
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=86.28 E-value=1.9 Score=40.53 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=59.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-C-CCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-P-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-~-~~~~~fD~V 230 (380)
++.+||-.|+|. |..+..+++..|.. +++++.++...+.+++ .+. ..++..+-. .+ . .+...+|+|
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~----~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 231 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARE----LGA---DDTINPKEEDVEKVRELTEGRGADLV 231 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCC---CEEecCccccHHHHHHHhCCCCCCEE
Confidence 478899998765 77777778777876 9999998877766543 232 111211100 00 1 123458988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+... .....+..+.+.|+++|.++...
T Consensus 232 ld~~------g~~~~~~~~~~~l~~~G~~v~~g 258 (343)
T cd08236 232 IEAA------GSPATIEQALALARPGGKVVLVG 258 (343)
T ss_pred EECC------CCHHHHHHHHHHhhcCCEEEEEc
Confidence 7541 12356788999999999988765
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=86.26 E-value=12 Score=35.08 Aligned_cols=92 Identities=13% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 159 PKNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
+.+||=.|+ |.|..+..+++..|+ +|++++.+++..+.+++.+ |.. .++..+-.++ ...++.+|+|
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~l---Ga~---~vi~~~~~~~~~~i~~~~~~gvd~v 228 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSEL---GFD---AAINYKTDNVAERLRELCPEGVDVY 228 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhc---CCc---EEEECCCCCHHHHHHHHCCCCceEE
Confidence 378888885 578888888888787 8999999988776665432 321 1222111111 0112568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-... . ..+..+.+.|+++|+++...
T Consensus 229 id~~g-----~--~~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 229 FDNVG-----G--EISDTVISQMNENSHIILCG 254 (345)
T ss_pred EECCC-----c--HHHHHHHHHhccCCEEEEEe
Confidence 74321 2 23578899999999998754
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=86.14 E-value=9.5 Score=36.97 Aligned_cols=100 Identities=19% Similarity=0.180 Sum_probs=60.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCC-C-C-CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQ-Q-P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~-~-~-~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|.+ ++.+|.++.-++.+++ .|. . .+... +..+ + . .....+|+
T Consensus 185 ~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~Ga--~-~v~~~~~~~~~~~v~~~~~~~g~Dv 257 (393)
T TIGR02819 185 PGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----FGC--E-TVDLSKDATLPEQIEQILGEPEVDC 257 (393)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----cCC--e-EEecCCcccHHHHHHHHcCCCCCcE
Confidence 37788778876 466667777776765 5667888877777765 232 1 11111 1100 0 0 12346898
Q ss_pred EEeccccCC--------CCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEH--------MPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~--------~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-.... ..+....++++.+.+++||.+++.-.
T Consensus 258 vid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 258 AVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 875433210 01224588999999999999998765
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.07 E-value=0.69 Score=42.72 Aligned_cols=54 Identities=24% Similarity=0.343 Sum_probs=37.6
Q ss_pred CeEEEEcCCCCC--CCCCCCccEEEec--ccc--C--CC----------CCHHHHHHHHHHhcCCCcEEEEE
Q 016921 209 KVSFQVGDALQQ--PFPDGQFDLVWSM--ESG--E--HM----------PDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 209 ~v~~~~~d~~~~--~~~~~~fD~V~~~--~~l--~--~~----------~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+..++++|..+. .+++++||+|++. +.+ . .. .-....+.++.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 456788887774 4667899999983 211 0 00 00146889999999999999985
|
|
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=86.06 E-value=14 Score=35.35 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=59.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE--cCCCC-C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQV--GDALQ-Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~--~d~~~-~-~~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.++..++.+++ .|...-+.... .+..+ + ....+.+|+|+
T Consensus 185 ~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~----~Ga~~~i~~~~~~~~~~~~v~~~~~~g~d~vi 260 (368)
T TIGR02818 185 EGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK----LGATDCVNPNDYDKPIQEVIVEITDGGVDYSF 260 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCCCeEEcccccchhHHHHHHHHhCCCCCEEE
Confidence 48899999987 46677778887777 79999999998887754 23210011110 00000 0 01123588876
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
-.-. . ...+..+.+.+++| |++++...
T Consensus 261 d~~G-----~-~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 261 ECIG-----N-VNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred ECCC-----C-HHHHHHHHHHhhcCCCeEEEEec
Confidence 4321 1 34678888999886 99887654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.90 E-value=9 Score=36.03 Aligned_cols=93 Identities=22% Similarity=0.241 Sum_probs=60.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-------C--CCCCCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-------Q--PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-------~--~~~~~~ 226 (380)
++.+||=.|+|. |..+..+++..|.+ |++++.++...+.+++. +. -.++..+-.. + ......
T Consensus 162 ~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~----g~---~~vi~~~~~~~~~~~~~~~~~~~~~~ 234 (343)
T cd05285 162 PGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL----GA---THTVNVRTEDTPESAEKIAELLGGKG 234 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc----CC---cEEeccccccchhHHHHHHHHhCCCC
Confidence 488888888764 77777788877877 89999888877766542 21 1111111111 0 123356
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|+-.... ...+....+.|+++|+++...
T Consensus 235 ~d~vld~~g~------~~~~~~~~~~l~~~G~~v~~g 265 (343)
T cd05285 235 PDVVIECTGA------ESCIQTAIYATRPGGTVVLVG 265 (343)
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCEEEEEc
Confidence 9998854321 236788899999999988754
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=85.79 E-value=6.1 Score=38.03 Aligned_cols=94 Identities=18% Similarity=0.272 Sum_probs=60.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--C-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--Q-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~-----~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|.. .++...-.+ . ....+.+|
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~---~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT---DFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc---EEEecccccchHHHHHHHHhCCCCC
Confidence 48899999987 46677777777777 69999999988887754 2321 122111100 0 01122689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...+..+...+++| |++++...
T Consensus 271 vvid~~G-----~-~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-----N-VEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-----C-hHHHHHHHHhhhcCCCEEEEEcc
Confidence 8875332 1 25678888899997 98877653
|
|
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=85.73 E-value=17 Score=36.48 Aligned_cols=106 Identities=18% Similarity=0.201 Sum_probs=65.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC-CC-CCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ-PF-PDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~-~~-~~~~fD~ 229 (380)
++..|.|..||+|.+.....+.. ...++|.+..+.+...++....-.+... ......+|-... .+ ...+||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 36789999999999887654432 2469999999999999888754444321 222333332221 11 2345777
Q ss_pred EEeccc--------------------cCC----CCC-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMES--------------------GEH----MPD-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~--------------------l~~----~~~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+++-- +.| ..+ --.++..+..+|++||+..+.-
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 664321 111 111 2367888999999999866654
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=85.57 E-value=5.8 Score=30.94 Aligned_cols=88 Identities=20% Similarity=0.286 Sum_probs=55.4
Q ss_pred CCEEEEECCCcCh-HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~-~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l 236 (380)
..+|+|||-|-=. .+..|+++ |..|+++|+++.. | +..++++..|..+.... -+..|+|++ +
T Consensus 14 ~gkVvEVGiG~~~~VA~~L~e~-g~dv~atDI~~~~---a---------~~g~~~v~DDitnP~~~iY~~A~lIYS---i 77 (129)
T COG1255 14 RGKVVEVGIGFFLDVAKRLAER-GFDVLATDINEKT---A---------PEGLRFVVDDITNPNISIYEGADLIYS---I 77 (129)
T ss_pred CCcEEEEccchHHHHHHHHHHc-CCcEEEEeccccc---C---------cccceEEEccCCCccHHHhhCccceee---c
Confidence 4599999988533 45556665 8999999999861 1 14689999999885421 134566665 3
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.--++.+..+-.+.+.+ |..+++...
T Consensus 78 RpppEl~~~ildva~aV--ga~l~I~pL 103 (129)
T COG1255 78 RPPPELQSAILDVAKAV--GAPLYIKPL 103 (129)
T ss_pred CCCHHHHHHHHHHHHhh--CCCEEEEec
Confidence 33345555555555543 344555543
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.47 E-value=14 Score=32.72 Aligned_cols=102 Identities=19% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCH-HHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSP-VQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||-.|+ +|.++..+++.+ |.+|++++.+. ...+.....+...+ .++.++.+|+.+.. +. -
T Consensus 6 ~k~vlItGa-sggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 6 GKTALVTGS-SRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CcEEEEECC-CCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 578888885 455666665544 78898887654 23333333333322 45788889987642 00 1
Q ss_pred CCccEEEeccccCCCC-------------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMP-------------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~-------------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|.|+......... -...+++.+.+.++.+|.+++..
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 3688877654332110 12356677777777677766654
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=85.32 E-value=4.1 Score=38.82 Aligned_cols=123 Identities=15% Similarity=0.162 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHH-------HHHcCC-
Q 016921 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANAL-------AAARGL- 206 (380)
Q Consensus 136 ~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~-------~~~~~~- 206 (380)
+.+...+..+++.+.+.+ +....|+|+|.|.....++...+ ..-+|+++...--+.+..+ .+-.|-
T Consensus 175 E~~~~ql~si~dEl~~g~-----~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~ 249 (419)
T KOG3924|consen 175 ETQLEQLRSIVDELKLGP-----ADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK 249 (419)
T ss_pred hhhHHHHHHHHHHhccCC-----CCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC
Confidence 334445555566665554 88999999999999988887543 3456666654322222221 111232
Q ss_pred CCCeEEEEcCCCCCCC---CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 207 ADKVSFQVGDALQQPF---PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 207 ~~~v~~~~~d~~~~~~---~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+..++.+++++.+... -....++|+++.+..- ++...-+.++..-+++|-+++-...
T Consensus 250 ~~~~~~i~gsf~~~~~v~eI~~eatvi~vNN~~Fd-p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 250 PNKIETIHGSFLDPKRVTEIQTEATVIFVNNVAFD-PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred cCceeecccccCCHHHHHHHhhcceEEEEecccCC-HHHHHhhHHHHhhCCCcceEecccc
Confidence 4557778888765321 1245677777665432 3333445588899999999888763
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=85.29 E-value=1.6 Score=41.98 Aligned_cols=61 Identities=21% Similarity=0.277 Sum_probs=50.9
Q ss_pred CCCCCeEEEEcCCCCC--CCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 205 GLADKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 205 ~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++ ++++++.+++.+. ..+++++|.++....+.++++ ..+.++++.+.++|||++++=....
T Consensus 273 ~~-drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 273 RL-DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CC-CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 44 7899999998874 246799999999999999965 4688999999999999999976543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.25 E-value=4.1 Score=39.82 Aligned_cols=87 Identities=17% Similarity=0.173 Sum_probs=55.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=+|+|. |......++..|++|+.+|.++.....+.. .| ..+ .++.+. -...|+|+...
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~----~G----~~v--~~l~ea---l~~aDVVI~aT-- 275 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAM----DG----FRV--MTMEEA---AELGDIFVTAT-- 275 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHh----cC----CEe--cCHHHH---HhCCCEEEECC--
Confidence 488999999984 555555555558999999999876443322 12 221 122221 13589987643
Q ss_pred CCCCCHHHHHH-HHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVS-ELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~-~~~r~LkpgG~l~~~~ 263 (380)
... .++. +....+|+|++++...
T Consensus 276 ---G~~-~vI~~~~~~~mK~GailiNvG 299 (425)
T PRK05476 276 ---GNK-DVITAEHMEAMKDGAILANIG 299 (425)
T ss_pred ---CCH-HHHHHHHHhcCCCCCEEEEcC
Confidence 222 3454 7889999999888865
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=85.13 E-value=12 Score=36.53 Aligned_cols=100 Identities=17% Similarity=0.132 Sum_probs=60.1
Q ss_pred CCCCEEEEEC-CC-cChHHHHHHHHcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC---CC-----C-C
Q 016921 157 KRPKNVVDVG-CG-IGGSSRYLAKKFGA---KCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL---QQ-----P-F 222 (380)
Q Consensus 157 ~~~~~vLDiG-cG-tG~~~~~l~~~~~~---~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~---~~-----~-~ 222 (380)
.++.+||=+| +| .|..+..+++..+. +|+++|.++..++.+++................|.. ++ . .
T Consensus 174 ~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 174 KPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 3478898887 34 67788888887543 799999999999888774211000001111111221 11 0 1
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
....+|+|+.... . ...+..+.+.++++|.+++.
T Consensus 254 ~g~g~D~vid~~g-----~-~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 254 GGQGFDDVFVFVP-----V-PELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred CCCCCCEEEEcCC-----C-HHHHHHHHHHhccCCeEEEE
Confidence 2346888875321 1 35778899999998876654
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=85.05 E-value=15 Score=33.94 Aligned_cols=89 Identities=18% Similarity=0.178 Sum_probs=58.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..|.++++++.+++..+.+++ .|.. .+ .+.... ...+.+|+|+-...
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~----~g~~-~~----~~~~~~-~~~~~~d~vid~~g- 223 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR----LGVE-TV----LPDEAE-SEGGGFDVVVEATG- 223 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH----cCCc-EE----eCcccc-ccCCCCCEEEECCC-
Confidence 47888888765 3555556666668899999999988887765 2321 11 111111 23456998875421
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. ...+..+.+.|+++|.+++.
T Consensus 224 ----~-~~~~~~~~~~l~~~g~~v~~ 244 (319)
T cd08242 224 ----S-PSGLELALRLVRPRGTVVLK 244 (319)
T ss_pred ----C-hHHHHHHHHHhhcCCEEEEE
Confidence 1 34678888999999999874
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta |
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=84.97 E-value=5.5 Score=34.09 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=60.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+||=+|.= ||.....+..+ .++|+.+|+.|.|-.. +|+++.|..+ +.+..+.+|+|+-...+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~---------lp~~v~Fr~~----~~~~~G~~DlivDlTGl 109 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGF---------LPNNVKFRNL----LKFIRGEVDLIVDLTGL 109 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhc---------CCCCccHhhh----cCCCCCceeEEEecccc
Confidence 37889999976 77777766665 7899999999987543 4567777654 33457889999988777
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
..+ ++ +..+-+.| +.+++-+..
T Consensus 110 GG~-~P-----e~L~~fnp-~vfiVEdP~ 131 (254)
T COG4017 110 GGI-EP-----EFLAKFNP-KVFIVEDPK 131 (254)
T ss_pred CCC-CH-----HHHhccCC-ceEEEECCC
Confidence 765 22 23333444 455555543
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=84.84 E-value=4.9 Score=37.89 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=63.0
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCCCccEEEe
Q 016921 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~~fD~V~~ 232 (380)
++.+||=.| .|.|.++..|++..|..++++.-+++-.+.+++ .|-..-+.+...|+.+- ......+|+|+-
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 489999998 446778899999887677777777766555443 33221223233332221 112346999985
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.-. ...+.+..+.|+++|+++.....
T Consensus 218 ~vG-------~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 218 TVG-------GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred CCC-------HHHHHHHHHHhccCCEEEEEecC
Confidence 422 45677899999999999987653
|
|
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=17 Score=34.25 Aligned_cols=75 Identities=23% Similarity=0.153 Sum_probs=50.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C---------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F---------PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~---------~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.++.++..++...+.+...+ .++.++.+|+.+.. . .-+
T Consensus 8 ~k~vlITGa-s~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~g 84 (334)
T PRK07109 8 RQVVVITGA-SAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEELG 84 (334)
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHCC
Confidence 566777774 555666665544 7899999999887776666555444 46888899987642 0 124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|+++.+...
T Consensus 85 ~iD~lInnAg~ 95 (334)
T PRK07109 85 PIDTWVNNAMV 95 (334)
T ss_pred CCCEEEECCCc
Confidence 78998876544
|
|
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=84.79 E-value=12 Score=35.18 Aligned_cols=96 Identities=16% Similarity=0.137 Sum_probs=61.2
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCC-C-CCCCCCccEEEe
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQ-Q-PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~-~-~~~~~~fD~V~~ 232 (380)
++.+||=.|+ |.|..+..+++..|.+|++++.+++..+.+++.+ |...-+..... +..+ + ....+.+|+|+-
T Consensus 151 ~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~l---Ga~~vi~~~~~~~~~~~i~~~~~~gvd~v~d 227 (338)
T cd08295 151 KGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKL---GFDDAFNYKEEPDLDAALKRYFPNGIDIYFD 227 (338)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhc---CCceeEEcCCcccHHHHHHHhCCCCcEEEEE
Confidence 4889998885 4677888888888999999999988777665422 32110111111 1110 0 011246888874
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. . ...+..+.+.|+++|.++...
T Consensus 228 ~~-----g--~~~~~~~~~~l~~~G~iv~~G 251 (338)
T cd08295 228 NV-----G--GKMLDAVLLNMNLHGRIAACG 251 (338)
T ss_pred CC-----C--HHHHHHHHHHhccCcEEEEec
Confidence 32 1 256788999999999988764
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.77 E-value=1.3 Score=43.38 Aligned_cols=106 Identities=17% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-------CCCCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------~~~~~~fD~ 229 (380)
.+.++|-||-|.|.+...+...+ ..++++++++|.|+..|++.+.-..- .+..+...|..+. .-.+..||+
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~-~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQS-DRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhh-hhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 36678999999999998887777 58999999999999999987632211 1233333343221 124567998
Q ss_pred EEec----cccCCCCC------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 230 VWSM----ESGEHMPD------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 230 V~~~----~~l~~~~~------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+..- . .+.+.. .+.++..+...|.|-|.+++.-.+
T Consensus 374 l~~dvds~d-~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~ 418 (482)
T KOG2352|consen 374 LMVDVDSKD-SHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVT 418 (482)
T ss_pred EEEECCCCC-cccCcCCchHHHHHHHHHHHhhccCccceEEEEEec
Confidence 8752 2 222221 156888999999999999887643
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=9.2 Score=34.33 Aligned_cols=75 Identities=19% Similarity=0.141 Sum_probs=48.4
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCCC
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDGQ 226 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~~ 226 (380)
.+||=.| |+|.++..+++.+ +.+|++++.++...+...+.+...+ .++.++.+|+.+.. + .-+.
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 78 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSDAEACERLIEAAVARFGG 78 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567555 5566666666554 7899999999876665554444333 46888889987642 0 0136
Q ss_pred ccEEEeccccC
Q 016921 227 FDLVWSMESGE 237 (380)
Q Consensus 227 fD~V~~~~~l~ 237 (380)
.|.|+......
T Consensus 79 id~vi~~ag~~ 89 (263)
T PRK06181 79 IDILVNNAGIT 89 (263)
T ss_pred CCEEEECCCcc
Confidence 89988765443
|
|
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.62 E-value=9.2 Score=33.56 Aligned_cols=75 Identities=21% Similarity=0.267 Sum_probs=53.2
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.++.+++++.++.-. ..-|.+||.|.|+.+..+.+....++..+++++..+.-.+-..+.. +.+..++.+|+.
T Consensus 36 ~~lT~KIvK~A~~~~-----~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~L 108 (326)
T KOG0821|consen 36 LRLTDKIVKKAGNLT-----NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVL 108 (326)
T ss_pred hHHHHHHHHhccccc-----cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEeccccc
Confidence 346666777666433 6789999999999999998875467788888777666555444322 357788888876
Q ss_pred CC
Q 016921 219 QQ 220 (380)
Q Consensus 219 ~~ 220 (380)
..
T Consensus 109 R~ 110 (326)
T KOG0821|consen 109 RF 110 (326)
T ss_pred ee
Confidence 53
|
|
| >cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH) | Back alignment and domain information |
|---|
Probab=84.47 E-value=14 Score=35.04 Aligned_cols=93 Identities=25% Similarity=0.175 Sum_probs=58.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~-~~~~~ 226 (380)
++.+||=.|+| .|..+..+++..|. +|++++.++...+.+++ .|.. .++..+-... . .....
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELARE----FGAD---ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCC---eEEcCcccccHHHHHHHHHHhCCCC
Confidence 47788888865 45566677777788 99999998877665543 2321 1111111100 0 12346
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+|+-... ....+....+.|+++|+++...
T Consensus 250 ~d~vid~~g------~~~~~~~~~~~l~~~G~~v~~g 280 (361)
T cd08231 250 ADVVIEASG------HPAAVPEGLELLRRGGTYVLVG 280 (361)
T ss_pred CcEEEECCC------ChHHHHHHHHHhccCCEEEEEc
Confidence 898875321 1346788899999999998764
|
This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino |
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.26 E-value=14 Score=33.12 Aligned_cols=102 Identities=15% Similarity=0.075 Sum_probs=61.6
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
+..+|=.|+++ +.++..+++++ |++|+.++.+....+..++...+.+ .+.++.+|+.+.. -.-
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~~~ 86 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAEEW 86 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHHHc
Confidence 67899999876 36666666655 7899998888654333333332221 3456778887631 012
Q ss_pred CCccEEEeccccCC-------CC--C---HHH-----------HHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEH-------MP--D---KSK-----------FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~~--~---~~~-----------~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+++.+..+.. +. + ... +.+.+...++.+|.++...
T Consensus 87 g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 87 GRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 57899887655432 11 1 111 3456677777788876654
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=84.12 E-value=4.9 Score=37.32 Aligned_cols=89 Identities=20% Similarity=0.228 Sum_probs=53.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.+.+|+=||.| .|..+...+...|++|+++|.++...+.++. .| ..+. +..++.-.-..+|+|+..-
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~----~G----~~~~--~~~~l~~~l~~aDiVI~t~-- 218 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITE----MG----LSPF--HLSELAEEVGKIDIIFNTI-- 218 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cC----Ceee--cHHHHHHHhCCCCEEEECC--
Confidence 47899999998 4555555555558999999999876554432 22 2222 1112211124689998742
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+. .-+-++..+.++||+.++-.
T Consensus 219 ---p~-~~i~~~~l~~~~~g~vIIDl 240 (296)
T PRK08306 219 ---PA-LVLTKEVLSKMPPEALIIDL 240 (296)
T ss_pred ---Ch-hhhhHHHHHcCCCCcEEEEE
Confidence 11 12345677889998866644
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=84.10 E-value=3.4 Score=39.47 Aligned_cols=107 Identities=18% Similarity=0.206 Sum_probs=72.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-CCCCeEEEEcCCCCCC--------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG-LADKVSFQVGDALQQP-------------- 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~-~~~~v~~~~~d~~~~~-------------- 221 (380)
.+.++||.+|+.+.....+++.+ ..+--|+++..+.+..+.......+ ......+..+|+...+
T Consensus 180 d~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~ 259 (364)
T KOG1269|consen 180 DGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSEHVDILLEIEGGDALPAETFNTDVFDLLKSFG 259 (364)
T ss_pred CcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcccccccCceeccccccceeccccHHHHHhhcc
Confidence 36799999999999999999887 4566678887777766554432211 1123444544443211
Q ss_pred ---------------CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 222 ---------------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 222 ---------------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
++...+|. ..++-|+.+...++......++|+|.+++.+....
T Consensus 260 ~~~~~~~~dl~~~~s~~w~~~~~---~~~~~~~~~~~~~f~~~~~~~~~~~~v~~~e~~~~ 317 (364)
T KOG1269|consen 260 FEHLKLEKDLALKSSFPWNTPLT---RDTITHWQDKSALFRGRVATLKPGGKVLILEYIRG 317 (364)
T ss_pred chhhhhcccccCCCccccccccc---hhheeecccccHHHHhHhhccCcCceEEehhhcCc
Confidence 12233443 45666777778899999999999999999886543
|
|
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.06 E-value=16 Score=32.44 Aligned_cols=78 Identities=21% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++...+.........+ .++.++.+|+.+.. + ..+
T Consensus 4 ~~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (258)
T PRK12429 4 GKVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVTDEEAINAGIDYAVETFG 80 (258)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 45677555 5677777777765 7899999999887666555444333 46888899987631 0 114
Q ss_pred CccEEEeccccCCC
Q 016921 226 QFDLVWSMESGEHM 239 (380)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (380)
.+|+|+......+.
T Consensus 81 ~~d~vi~~a~~~~~ 94 (258)
T PRK12429 81 GVDILVNNAGIQHV 94 (258)
T ss_pred CCCEEEECCCCCCC
Confidence 68998876654433
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=13 Score=37.79 Aligned_cols=78 Identities=13% Similarity=0.095 Sum_probs=49.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHc-----C--CCCCeEEEEcCCCCCC-C--CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAAR-----G--LADKVSFQVGDALQQP-F--PD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~-----~--~~~~v~~~~~d~~~~~-~--~~ 224 (380)
.+.+||=.|+ +|.++..+++++ |.+|++++.+...+....+.+... + ...++.++.+|+.+.. + .-
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 4667776664 566777766655 789999999887665443332221 1 1135889999998742 1 11
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+|++....
T Consensus 158 ggiDiVVn~AG~ 169 (576)
T PLN03209 158 GNASVVICCIGA 169 (576)
T ss_pred cCCCEEEEcccc
Confidence 468988876543
|
|
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.62 E-value=26 Score=33.45 Aligned_cols=94 Identities=22% Similarity=0.242 Sum_probs=59.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC-CC-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL-QQ-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~-~~-----~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|+ .|+++|.++..++.+++ .|.. .++.. +.. +. ....+.+|
T Consensus 186 ~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 258 (368)
T cd08300 186 PGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK----FGAT---DCVNPKDHDKPIQQVLVEMTDGGVD 258 (368)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCC---EEEcccccchHHHHHHHHHhCCCCc
Confidence 48899988876 46666777777787 79999999998887754 2321 11211 110 00 01123688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...+..+.+.|+++ |++++...
T Consensus 259 ~vid~~g-----~-~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 259 YTFECIG-----N-VKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEEECCC-----C-hHHHHHHHHhhccCCCeEEEEcc
Confidence 8875321 1 34678888999997 98887654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=83.50 E-value=16 Score=33.88 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=56.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=.|+| .|..+..+++..+.++++++.+....+.+++ .|. ..++ +.... +.+.+|+++....
T Consensus 167 ~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~----~g~---~~~~--~~~~~--~~~~vD~vi~~~~- 234 (329)
T cd08298 167 PGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE----LGA---DWAG--DSDDL--PPEPLDAAIIFAP- 234 (329)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH----hCC---cEEe--ccCcc--CCCcccEEEEcCC-
Confidence 37778778776 3445555666668999999999876666633 232 1111 11111 2356888764321
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....++.+.+.|+++|.++...
T Consensus 235 -----~~~~~~~~~~~l~~~G~~v~~g 256 (329)
T cd08298 235 -----VGALVPAALRAVKKGGRVVLAG 256 (329)
T ss_pred -----cHHHHHHHHHHhhcCCEEEEEc
Confidence 1247889999999999999765
|
These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha |
| >PLN02514 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=83.39 E-value=6.7 Score=37.34 Aligned_cols=95 Identities=17% Similarity=0.153 Sum_probs=57.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+||=+|+| .|..+..+++..|.++++++.+++....+.+. .|.. .++. .+...+.-....+|+|+-...
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~---~Ga~---~~i~~~~~~~~~~~~~~~D~vid~~g 253 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEH---LGAD---DYLVSSDAAEMQEAADSLDYIIDTVP 253 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHh---cCCc---EEecCCChHHHHHhcCCCcEEEECCC
Confidence 47788888766 56677778887788899998887665444332 2321 1111 110111000124787764321
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
....+..+.+.|++||+++....
T Consensus 254 ------~~~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T PLN02514 254 ------VFHPLEPYLSLLKLDGKLILMGV 276 (357)
T ss_pred ------chHHHHHHHHHhccCCEEEEECC
Confidence 12467788899999999888653
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=83.15 E-value=14 Score=38.04 Aligned_cols=89 Identities=13% Similarity=0.089 Sum_probs=57.1
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 232 (380)
.+|+=+|+| .++..+++.. +..++.+|.+++.++.+++ . ...++.+|+.+.. ..-++.|.+++
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~----g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRK----Y----GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----C----CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 456666655 4555555433 7899999999999887764 2 3678999998742 12346777766
Q ss_pred ccccCCCCCHHH--HHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSK--FVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~--~l~~~~r~LkpgG~l~~~~ 263 (380)
.. +|.+. .+-...|.+.|...++.-.
T Consensus 471 ~~-----~d~~~n~~i~~~~r~~~p~~~IiaRa 498 (601)
T PRK03659 471 TC-----NEPEDTMKIVELCQQHFPHLHILARA 498 (601)
T ss_pred Ee-----CCHHHHHHHHHHHHHHCCCCeEEEEe
Confidence 42 33332 3334556677888877754
|
|
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.13 E-value=23 Score=32.96 Aligned_cols=77 Identities=18% Similarity=0.101 Sum_probs=50.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |++|+.++.+..-.+.+.+.+.......++.++.+|+.+.. -..+
T Consensus 14 gk~~lITGas-~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~~ 92 (313)
T PRK05854 14 GKRAVVTGAS-DGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEGR 92 (313)
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 6677777765 55566665554 88999999988776666555543322236888999987742 1125
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|+++.+...
T Consensus 93 ~iD~li~nAG~ 103 (313)
T PRK05854 93 PIHLLINNAGV 103 (313)
T ss_pred CccEEEECCcc
Confidence 68998876544
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.08 E-value=6.8 Score=37.02 Aligned_cols=93 Identities=19% Similarity=0.132 Sum_probs=59.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|. .++++|.++...+.+++ .|.. .++..+-.+. . .....+|+
T Consensus 166 ~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~g~~---~~v~~~~~~~~~~i~~~~~~~~~d~ 238 (351)
T cd08285 166 LGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----YGAT---DIVDYKNGDVVEQILKLTGGKGVDA 238 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCc---eEecCCCCCHHHHHHHHhCCCCCcE
Confidence 48889888876 46667777777677 59999999887776654 2321 1111111111 0 12346898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-... . ...+.++.+.|+++|+++...
T Consensus 239 vld~~g-----~-~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 239 VIIAGG-----G-QDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EEECCC-----C-HHHHHHHHHHhhcCCEEEEec
Confidence 874321 1 356889999999999988764
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=82.92 E-value=5 Score=38.64 Aligned_cols=93 Identities=23% Similarity=0.314 Sum_probs=57.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-----CCC-C-CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD-----ALQ-Q-PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-----~~~-~-~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|. .|+++|.++...+.+++ .|.. .++... ... + ....+.+|
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----lGa~---~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----FGVT---DFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCCc---EEEcccccchHHHHHHHHHhCCCCC
Confidence 48899999876 36666677776676 58899999987777644 3321 111111 000 0 01123688
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 263 (380)
+|+-... . ...+....+.|++| |++++..
T Consensus 266 ~vid~~G-----~-~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 266 YSFECVG-----D-TGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEEECCC-----C-hHHHHHHHHhhccCCCEEEEEC
Confidence 8874322 1 23577888999999 9998754
|
|
| >KOG2912 consensus Predicted DNA methylase [Function unknown] | Back alignment and domain information |
|---|
Probab=82.91 E-value=3.3 Score=38.30 Aligned_cols=96 Identities=11% Similarity=0.106 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCE--EEEECCCcChHHHHHH-HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKN--VVDVGCGIGGSSRYLA-KKFGAKCQGITLSPVQAQRANALAAARGLADKV 210 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~--vLDiGcGtG~~~~~l~-~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v 210 (380)
.+.-.-+.++.++..-... ++.. =+|||.|+--+--.+. ..++....++|++......|...+.+.++.+.+
T Consensus 81 nR~nYihwI~DLLss~q~~-----k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~i 155 (419)
T KOG2912|consen 81 NRLNYIHWIEDLLSSQQSD-----KSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLI 155 (419)
T ss_pred cchhhHHHHHHHhhcccCC-----CcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccce
Confidence 4445556777777644211 1222 4788776643322222 222678999999999999999999999988888
Q ss_pred EEEEcCCCCCC-------CCCCCccEEEecc
Q 016921 211 SFQVGDALQQP-------FPDGQFDLVWSME 234 (380)
Q Consensus 211 ~~~~~d~~~~~-------~~~~~fD~V~~~~ 234 (380)
.+++....+.- .++..||++.|+-
T Consensus 156 kvV~~~~~ktll~d~~~~~~e~~ydFcMcNP 186 (419)
T KOG2912|consen 156 KVVKVEPQKTLLMDALKEESEIIYDFCMCNP 186 (419)
T ss_pred eeEEecchhhcchhhhccCccceeeEEecCC
Confidence 88877553311 1244588887754
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=82.68 E-value=5.3 Score=36.28 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=41.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
+...++|+|||.|.++..+++.. ...++.||-...-... -.+.........+.=+..|+.++.
T Consensus 18 ~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~-D~~~~~~~~~~~~~R~riDI~dl~ 86 (259)
T PF05206_consen 18 PDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKA-DNKIRKDESEPKFERLRIDIKDLD 86 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccc-hhhhhccCCCCceEEEEEEeeccc
Confidence 37799999999999999999876 2478999986543322 222322221124555666766653
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.44 E-value=32 Score=30.66 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=49.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |.+|+.++.+.+.++...+.+.......++.++.+|+.+.. -.-+
T Consensus 9 ~k~~lItGa~-~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 87 (257)
T PRK09242 9 GQTALITGAS-KGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDWVEDHWD 87 (257)
T ss_pred CCEEEEeCCC-chHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 6778888864 44455555444 78999999988777665555543311246788889987631 0124
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|.|+.....
T Consensus 88 ~id~li~~ag~ 98 (257)
T PRK09242 88 GLHILVNNAGG 98 (257)
T ss_pred CCCEEEECCCC
Confidence 68998876654
|
|
| >PRK06940 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.57 E-value=23 Score=32.25 Aligned_cols=98 Identities=20% Similarity=0.221 Sum_probs=61.1
Q ss_pred EEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCCccE
Q 016921 161 NVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQFDL 229 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~fD~ 229 (380)
.+|=-|+ |.++..+++.+ |.+|+.+|.++..++...+.+...+ .++.++.+|+.+.. + ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555554 46777777766 7899999998876665555544333 36778888987641 1 1256899
Q ss_pred EEeccccCCC-CCHH-----------HHHHHHHHhcCCCcEEEEE
Q 016921 230 VWSMESGEHM-PDKS-----------KFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 230 V~~~~~l~~~-~~~~-----------~~l~~~~r~LkpgG~l~~~ 262 (380)
++.+..+... .++. .+++.+.+.++++|.+++.
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 8876655332 2222 2455666667666665443
|
|
| >PRK06128 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=24 Score=32.57 Aligned_cols=102 Identities=21% Similarity=0.202 Sum_probs=60.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH--HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV--QAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~--~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (380)
+.+||=.|+ +|.++..+++.+ |.+|+.+..+.. ..+...+.+...+ .++.++.+|+.+.. + .
T Consensus 55 ~k~vlITGa-s~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~ 131 (300)
T PRK06128 55 GRKALITGA-DSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVKE 131 (300)
T ss_pred CCEEEEecC-CCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHHH
Confidence 567888884 555666666555 788887766533 2233333333333 35778889987631 0 1
Q ss_pred CCCccEEEeccccCC----CCC-----H-----------HHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEH----MPD-----K-----------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~----~~~-----~-----------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..|+++.+..... +.+ + -.+++.+.+.++++|.++...
T Consensus 132 ~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~s 191 (300)
T PRK06128 132 LGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINTG 191 (300)
T ss_pred hCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEEC
Confidence 146899887665432 111 1 125566777778888877754
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.33 E-value=27 Score=32.12 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=59.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.|+ +|.++..+++++ |.+|+.++.++. ..+.....+...+ .++.++.+|+.+.. +. -
T Consensus 46 ~k~iLItGa-sggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~~~ 122 (290)
T PRK06701 46 GKVALITGG-DSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVREL 122 (290)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 567888885 455555555544 889999887643 2333333333333 36788899987632 10 1
Q ss_pred CCccEEEeccccCCC----CC----------------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHM----PD----------------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~----~~----------------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+|+.+...... .+ .-.+++.+.+.++++|.+++..
T Consensus 123 ~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 123 GRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 468988865443221 11 1234556666677788777654
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.33 E-value=12 Score=33.89 Aligned_cols=89 Identities=15% Similarity=0.161 Sum_probs=63.0
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
...++...+|+|.-.|+|+-.|.++ +..|++||.-+-... .. . .+.|+....|-..+.-.....|..+|..
T Consensus 208 rL~~~M~avDLGAcPGGWTyqLVkr-~m~V~aVDng~ma~s----L~-d---tg~v~h~r~DGfk~~P~r~~idWmVCDm 278 (358)
T COG2933 208 RLAPGMWAVDLGACPGGWTYQLVKR-NMRVYAVDNGPMAQS----LM-D---TGQVTHLREDGFKFRPTRSNIDWMVCDM 278 (358)
T ss_pred hhcCCceeeecccCCCccchhhhhc-ceEEEEeccchhhhh----hh-c---ccceeeeeccCcccccCCCCCceEEeeh
Confidence 3456999999999999999999987 899999998663211 11 1 2467778888776632357789888753
Q ss_pred ccCCCCCHHHHHHHHHHhcCCC
Q 016921 235 SGEHMPDKSKFVSELARVTAPA 256 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~Lkpg 256 (380)
+ ..+.++-..+...|..|
T Consensus 279 V----EkP~rv~~li~~Wl~nG 296 (358)
T COG2933 279 V----EKPARVAALIAKWLVNG 296 (358)
T ss_pred h----cCcHHHHHHHHHHHHcc
Confidence 2 45666666677766544
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=81.32 E-value=6.7 Score=33.51 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=48.8
Q ss_pred CEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCCC---------CCCCCc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQP---------FPDGQF 227 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~~---------~~~~~f 227 (380)
..|+.+|||-=.....+.... +..++-+|. |++++.-++.+.+.+. +.+.+++..|+.+.. +..+..
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 389999999988888887754 567777777 5566666666555421 123567999988631 334455
Q ss_pred cEEEeccccCCCC
Q 016921 228 DLVWSMESGEHMP 240 (380)
Q Consensus 228 D~V~~~~~l~~~~ 240 (380)
-++++-+++.+++
T Consensus 159 tl~i~Egvl~Yl~ 171 (183)
T PF04072_consen 159 TLFIAEGVLMYLS 171 (183)
T ss_dssp EEEEEESSGGGS-
T ss_pred eEEEEcchhhcCC
Confidence 5677777788874
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=81.22 E-value=16 Score=34.47 Aligned_cols=122 Identities=17% Similarity=0.175 Sum_probs=77.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~ 234 (380)
..+++|+=||.|.+..-+... | .-+.++|+++..++.-+.+.. ...+...|..... +....+|+++...
T Consensus 3 ~~~~idLFsG~GG~~lGf~~a-gf~~~~a~Eid~~a~~ty~~n~~------~~~~~~~di~~~~~~~~~~~~~DvligGp 75 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEA-GFEIVFANEIDPPAVATYKANFP------HGDIILGDIKELDGEALRKSDVDVLIGGP 75 (328)
T ss_pred CceEEeeccCCchHHHHHHhc-CCeEEEEEecCHHHHHHHHHhCC------CCceeechHhhcChhhccccCCCEEEeCC
Confidence 568999999999999888776 5 457789999998877666542 2455666766543 1112789998754
Q ss_pred ccCCC---------CCHH----HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 235 SGEHM---------PDKS----KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 235 ~l~~~---------~~~~----~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
-...+ .|+. -.+.++...++| .+++.|-... ++.. .....+.
T Consensus 76 PCQ~FS~aG~r~~~~D~R~~L~~~~~r~I~~~~P--~~fv~ENV~g---------------l~~~--------~~~~~~~ 130 (328)
T COG0270 76 PCQDFSIAGKRRGYDDPRGSLFLEFIRLIEQLRP--KFFVLENVKG---------------LLSS--------KGQTFDE 130 (328)
T ss_pred CCcchhhcCcccCCcCccceeeHHHHHHHHhhCC--CEEEEecCch---------------HHhc--------CchHHHH
Confidence 43333 2221 244566666778 6666663211 1111 1135678
Q ss_pred HHHHHHhCCCc
Q 016921 302 YVKLLQSLSLE 312 (380)
Q Consensus 302 ~~~ll~~aGf~ 312 (380)
+.+.|++.||.
T Consensus 131 i~~~L~~~GY~ 141 (328)
T COG0270 131 IKKELEELGYG 141 (328)
T ss_pred HHHHHHHcCCc
Confidence 88889999986
|
|
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=81.18 E-value=21 Score=36.36 Aligned_cols=88 Identities=18% Similarity=0.159 Sum_probs=54.8
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEe
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWS 232 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~ 232 (380)
.+|+=+||| .++..+++.. +..++.+|.+++..+.+++ .....+.+|+.+.. ..-+..|.+++
T Consensus 418 ~hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~--------~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE--------RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 456666665 4555555544 6789999999998877764 24778999998742 22356786654
Q ss_pred ccccCCCCCH--HHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~ 262 (380)
.- +|. ...+-...+...|...++.-
T Consensus 488 ~~-----~~~~~~~~iv~~~~~~~~~~~iiar 514 (558)
T PRK10669 488 TI-----PNGYEAGEIVASAREKRPDIEIIAR 514 (558)
T ss_pred Ec-----CChHHHHHHHHHHHHHCCCCeEEEE
Confidence 31 222 22233344556777766664
|
|
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.13 E-value=8.6 Score=36.97 Aligned_cols=94 Identities=20% Similarity=0.255 Sum_probs=56.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHH-HHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQ-AQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~-~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+||=.|+| .|..+..+++..|++|++++.+++. .+.++ +.|.. .++. .+...+.-..+.+|+|+-..
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~----~lGa~---~~i~~~~~~~v~~~~~~~D~vid~~ 250 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAID----RLGAD---SFLVTTDSQKMKEAVGTMDFIIDTV 250 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHH----hCCCc---EEEcCcCHHHHHHhhCCCcEEEECC
Confidence 47888888886 4667777888778899999987654 33332 23321 1111 01001100012478877432
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ....+..+.+.|++||.++....
T Consensus 251 G------~~~~~~~~~~~l~~~G~iv~vG~ 274 (375)
T PLN02178 251 S------AEHALLPLFSLLKVSGKLVALGL 274 (375)
T ss_pred C------cHHHHHHHHHhhcCCCEEEEEcc
Confidence 1 12467888999999999987653
|
|
| >PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases | Back alignment and domain information |
|---|
Probab=81.07 E-value=5.1 Score=37.03 Aligned_cols=75 Identities=19% Similarity=0.190 Sum_probs=45.9
Q ss_pred CCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE----EEcCCCCCC-----CCCCCccEEEe
Q 016921 166 GCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSF----QVGDALQQP-----FPDGQFDLVWS 232 (380)
Q Consensus 166 GcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~----~~~d~~~~~-----~~~~~fD~V~~ 232 (380)
-.|+|.++..+.+++ ..+++.+|.++..+-..++.+......+++.+ +.+|+.+.. +....+|+|+.
T Consensus 4 TGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l~~~l~~~~~~~~v~~~~~~vigDvrd~~~l~~~~~~~~pdiVfH 83 (293)
T PF02719_consen 4 TGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYELERELRSRFPDPKVRFEIVPVIGDVRDKERLNRIFEEYKPDIVFH 83 (293)
T ss_dssp ETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHHHHHCHHHC--TTCEEEEE--CTSCCHHHHHHHHTT--T-SEEEE
T ss_pred EccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHHHhhcccccCcccccCceeecccCHHHHHHHHhhcCCCEEEE
Confidence 357889999888876 36899999999988888777643322234554 488887642 55668999999
Q ss_pred ccccCCCC
Q 016921 233 MESGEHMP 240 (380)
Q Consensus 233 ~~~l~~~~ 240 (380)
..++-|++
T Consensus 84 aAA~KhVp 91 (293)
T PF02719_consen 84 AAALKHVP 91 (293)
T ss_dssp ------HH
T ss_pred ChhcCCCC
Confidence 99999984
|
The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.98 E-value=33 Score=30.85 Aligned_cols=76 Identities=17% Similarity=0.178 Sum_probs=49.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C----CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F----PDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~----~~~~ 226 (380)
+.++|=.|++. ..+..+++.+ |++|+.++.++..++...+.+.... ..++.++.+|+.+.. + .-+.
T Consensus 8 ~k~~lItGas~-gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~ 85 (263)
T PRK08339 8 GKLAFTTASSK-GIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIGE 85 (263)
T ss_pred CCEEEEeCCCC-cHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence 56778777654 4455555544 8899999999887766655543321 246888899988742 0 1246
Q ss_pred ccEEEecccc
Q 016921 227 FDLVWSMESG 236 (380)
Q Consensus 227 fD~V~~~~~l 236 (380)
+|+++.+...
T Consensus 86 iD~lv~nag~ 95 (263)
T PRK08339 86 PDIFFFSTGG 95 (263)
T ss_pred CcEEEECCCC
Confidence 8988866544
|
|
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.98 E-value=3.8 Score=38.75 Aligned_cols=92 Identities=20% Similarity=0.170 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||=.|+| .|..+..+++..|. .|++++.++...+.+++ .|.. .++ |..+.. ...+.+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~----~ga~---~~i--~~~~~~~~~~l~~~~~~~~~ 242 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEE----LGAT---IVL--DPTEVDVVAEVRKLTGGGGV 242 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEE--CCCccCHHHHHHHHhCCCCC
Confidence 47888888865 45566667777687 89999999988777654 2321 111 111111 122458
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.... ...++.+.+.|+++|.++....
T Consensus 243 d~vid~~g~------~~~~~~~~~~l~~~G~~v~~g~ 273 (351)
T cd08233 243 DVSFDCAGV------QATLDTAIDALRPRGTAVNVAI 273 (351)
T ss_pred CEEEECCCC------HHHHHHHHHhccCCCEEEEEcc
Confidence 988754321 2467888999999999887653
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >cd05281 TDH Threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.97 E-value=5.9 Score=37.28 Aligned_cols=95 Identities=22% Similarity=0.254 Sum_probs=56.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~~~~~~fD~V~~ 232 (380)
++.+||-.|+|. |..+..+++..|. .|++++-++.-.+.+++ .+...-+.....+. .+. .+.+.+|+|+.
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~~~~~~~~~-~~~~~vd~vld 237 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKK----MGADVVINPREEDVVEVKSV-TDGTGVDVVLE 237 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----hCcceeeCcccccHHHHHHH-cCCCCCCEEEE
Confidence 477787777763 6677777877777 78888877766655543 22210000001111 011 12356898875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.-. ....+.++.+.|+++|.++...
T Consensus 238 ~~g------~~~~~~~~~~~l~~~G~~v~~g 262 (341)
T cd05281 238 MSG------NPKAIEQGLKALTPGGRVSILG 262 (341)
T ss_pred CCC------CHHHHHHHHHHhccCCEEEEEc
Confidence 321 1345778899999999988754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.62 E-value=32 Score=32.75 Aligned_cols=97 Identities=21% Similarity=0.270 Sum_probs=58.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CC-C-CCCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQ-Q-PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~-~-~~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|. +|+++|.++...+.+++ .|...-+.....+. .+ + ....+.+|+|+
T Consensus 184 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~----~ga~~~i~~~~~~~~~~~~~~~~~~~g~d~vi 259 (365)
T cd08277 184 PGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE----FGATDFINPKDSDKPVSEVIREMTGGGVDYSF 259 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----cCCCcEeccccccchHHHHHHHHhCCCCCEEE
Confidence 48899988876 46666777777777 79999999988877754 23210011110000 00 0 01124688887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
-... . ...+..+.+.|+++ |.+++...
T Consensus 260 d~~g-----~-~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 260 ECTG-----N-ADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred ECCC-----C-hHHHHHHHHhcccCCCEEEEEcC
Confidence 4321 1 34678888999886 99888654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=80.26 E-value=8.6 Score=36.06 Aligned_cols=94 Identities=21% Similarity=0.209 Sum_probs=59.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEec
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~ 233 (380)
++.+||=.|+| .|..+..+++..|.+++.++.++...+.+++ .|. -.++...-.++. .....+|+|+..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~----~g~---~~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK----LGA---HHYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH----cCC---cEEecCCCccHHHHHHhcCCCCEEEEC
Confidence 47889888865 4666677777778899999999887777643 232 111111111110 011347888742
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.. ....+..+.+.|+++|.++....
T Consensus 236 ~g------~~~~~~~~~~~l~~~G~~v~~g~ 260 (333)
T cd08296 236 AP------NAKAISALVGGLAPRGKLLILGA 260 (333)
T ss_pred CC------chHHHHHHHHHcccCCEEEEEec
Confidence 11 13578889999999999887653
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 380 | ||||
| 3bus_A | 273 | Crystal Structure Of Rebm Length = 273 | 7e-20 | ||
| 2o57_A | 297 | Crystal Structure Of A Putative Sarcosine Dimethylg | 2e-15 | ||
| 3uj7_A | 266 | Phosphoethanolamine Methyltransferase From Plasmodi | 9e-12 | ||
| 3ujd_A | 266 | Phosphoethanolamine Methyltransferase Mutant (Y19f) | 1e-11 | ||
| 3uj6_A | 266 | Semet Phosphoethanolamine Methyltransferase From Pl | 1e-11 | ||
| 3ujc_A | 266 | Phosphoethanolamine Methyltransferase Mutant (H132a | 5e-11 | ||
| 3vc1_A | 312 | Crystal Structure Of Geranyl Diphosphate C-Methyltr | 4e-08 | ||
| 4f84_A | 320 | Structure Analysis Of Geranyl Diphosphate Methyltra | 8e-08 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 4e-06 | ||
| 1vl5_A | 260 | Crystal Structure Of A Putative Methyltransferase ( | 3e-05 | ||
| 1xxl_A | 239 | The Crystal Structure Of Ycgj Protein From Bacillus | 7e-05 | ||
| 3mgg_A | 276 | Crystal Structure Of Methyl Transferase From Methan | 2e-04 | ||
| 3f4k_A | 257 | Crystal Structure Of A Probable Methyltransferase F | 3e-04 | ||
| 3svz_A | 263 | Crystal Structure Of Apo Bt_2972, A Methyltransfera | 3e-04 | ||
| 3dh0_A | 219 | Crystal Structure Of A Sam Dependent Methyltransfer | 7e-04 |
| >pdb|3BUS|A Chain A, Crystal Structure Of Rebm Length = 273 | Back alignment and structure |
|
| >pdb|2O57|A Chain A, Crystal Structure Of A Putative Sarcosine Dimethylglycine Methyltransferase From Galdieria Sulphuraria Length = 297 | Back alignment and structure |
|
| >pdb|3UJ7|A Chain A, Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJD|A Chain A, Phosphoethanolamine Methyltransferase Mutant (Y19f) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3UJ6|A Chain A, Semet Phosphoethanolamine Methyltransferase From Plasmodium Falciparum In Complex With Sam And Po4 Length = 266 | Back alignment and structure |
|
| >pdb|3UJC|A Chain A, Phosphoethanolamine Methyltransferase Mutant (H132a) From Plasmodium Falciparum In Complex With Phosphocholine Length = 266 | Back alignment and structure |
|
| >pdb|3VC1|A Chain A, Crystal Structure Of Geranyl Diphosphate C-Methyltransferase From Streptomyces Coelicolor A3(2) In Complex With Mg2+, Geranyl-S- Thiolodiphosphate, And S-Adenosyl-L-Homocysteine Length = 312 | Back alignment and structure |
|
| >pdb|4F84|A Chain A, Structure Analysis Of Geranyl Diphosphate Methyltransferase In Complex With Sam Length = 320 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|1VL5|A Chain A, Crystal Structure Of A Putative Methyltransferase (Bh2331) From Bacillus Halodurans C-125 At 1.95 A Resolution Length = 260 | Back alignment and structure |
|
| >pdb|1XXL|A Chain A, The Crystal Structure Of Ycgj Protein From Bacillus Subitilis At 2.1 A Resolution Length = 239 | Back alignment and structure |
|
| >pdb|3MGG|A Chain A, Crystal Structure Of Methyl Transferase From Methanosarcina Mazei Length = 276 | Back alignment and structure |
|
| >pdb|3F4K|A Chain A, Crystal Structure Of A Probable Methyltransferase From Bacteroides Thetaiotaomicron. Northeast Structural Genomics Target Btr309 Length = 257 | Back alignment and structure |
|
| >pdb|3SVZ|A Chain A, Crystal Structure Of Apo Bt_2972, A Methyltransferase From Bacteroides Thetaiotaomicron Length = 263 | Back alignment and structure |
|
| >pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase From Aquifex Aeolicus Length = 219 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 1e-93
Identities = 76/292 (26%), Positives = 124/292 (42%), Gaps = 24/292 (8%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
A E + + YD+ + + IWG+++H G++E + A R+ +E + V
Sbjct: 2 AAPTPEEVRQMYDDFTDPFARIWGENLHFGYWEDAGADV--SVDDATDRLTDEMIALLDV 59
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
V+DVGCGIG + LA + GI++S Q +ANA A A GLA++V+
Sbjct: 60 RSG-----DRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVT 114
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
F DA+ PF D FD VW++ES HMPD+ + + E+ARV P GT+ I +
Sbjct: 115 FSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAIADFVLLAPVE 174
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
++E + + + +Y ++ L D S P
Sbjct: 175 ------GAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVK-- 226
Query: 332 HSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQK----NLIKFAIITCRKP 379
R+ ++ GA + MI ++ + +I RKP
Sbjct: 227 -----TAEAFENARSQVEPFMGAEGLDRMIATFRGLAEVPEAGYVLIGARKP 273
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 278 bits (712), Expect = 2e-92
Identities = 66/301 (21%), Positives = 119/301 (39%), Gaps = 15/301 (4%)
Query: 82 TSTTTMSDAAARELKEGIAEFYD--ESSSLWEDIWGD-HMHHGFYEPDSSVSVSDHRAAQ 138
++ + A ++ +K+ +YD +S + +WG +H G Y+ + R A
Sbjct: 6 SNGQSQPAATSKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREAS 63
Query: 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRAN 198
+R E ++ +R +D+G G GG++R+L +KFG + ++PVQ +R
Sbjct: 64 LRTDEWLASELAMT-GVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNE 122
Query: 199 ALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGT 258
GLAD ++ + G L+ P D +D +WS ++ H PDK K E ARV P G
Sbjct: 123 EYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGV 182
Query: 259 IIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318
+ I D ++ I D L S Y L + L ++
Sbjct: 183 MAITDPMKEDGIDKSS---------IQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFS 233
Query: 319 WSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378
++ + V + + + + IEG + + + + RK
Sbjct: 234 RPDSLVHHYSKVKAELIKRSSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRK 293
Query: 379 P 379
Sbjct: 294 S 294
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 1e-82
Identities = 70/328 (21%), Positives = 119/328 (36%), Gaps = 53/328 (16%)
Query: 71 SRKLITRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGD-----HMHHGFYEP 125
+T ++T + T A A +E IA +++ + GD H H+G
Sbjct: 17 RGSHMTTETTTATATAKIPAPATPYQEDIARYWNNEARPVNLRLGDVDGLYHHHYGIGPV 76
Query: 126 DSSV---------------SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
D + + +AQ + + L AG P +VD GCG G
Sbjct: 77 DRAALGDPEHSEYEKKVIAELHRLESAQAEFLMDHLGQAG----PDDT---LVDAGCGRG 129
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
GS ++FG++ +G+TLS QA N A + D V +V + L PF G
Sbjct: 130 GSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTAS 189
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
W+ ES ++ D SE +R G + +T C W ++ +A
Sbjct: 190 WNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYGQP---SKWVSQI-----NA 240
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKT 350
++ S +Y++ + L D + + P+W S+L G
Sbjct: 241 HFECNIHSRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSSLVT-GI---------- 289
Query: 351 IKGALAMPLMIEGYQKNLIKFAIITCRK 378
IE Y+ ++ +I +
Sbjct: 290 ------EKAFIESYRDGSFQYVLIAADR 311
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 223 bits (571), Expect = 1e-71
Identities = 52/296 (17%), Positives = 116/296 (39%), Gaps = 34/296 (11%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
T + + + + ++ DE ++E I+G++ + + ++
Sbjct: 2 TLIENLNSDKTFLENNQYTDEGVKVYEFIFGENYIS---------------SGGLEATKK 46
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
L ++E+ V+D+G G+GG Y+ +K+GA GI + AN
Sbjct: 47 ILSDIELNEN-----SKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERV--- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMES--GEHMPDKSKFVSELARVTAPAGTIIIV 262
+K+ F+ D L + FP+ FDL++S ++ + +K+K + + P GT++I
Sbjct: 99 SGNNKIIFEANDILTKEFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLIT 158
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
+C + + W+ E + + Y + +Y +L + + +++ ++D S
Sbjct: 159 DYCATE-------KENWDDEFKEYVKQRKY--TLITVEEYADILTACNFKNVVSKDLSDY 209
Query: 323 VAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378
K L + K I I+ ++ + ++ K
Sbjct: 210 WNQLLEVEHKYLHENKEEFLKLFSEKKFISLDDGWSRKIKDSKRKMQRWGYFKATK 265
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 163 bits (414), Expect = 3e-48
Identities = 35/230 (15%), Positives = 67/230 (29%), Gaps = 32/230 (13%)
Query: 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ I +F I + P S ++ +
Sbjct: 3 NENKTIHDFE------LNLICDFFSNMERQGPGS-------PEVTLKALSFI-------- 41
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
D + D+GCG GG + LA + G+ N A GL ++V+
Sbjct: 42 DNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGI 101
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
VG PF + + DL+WS + ++ + + ++E + G + +
Sbjct: 102 VGSMDDLPFRNEELDLIWSEGAIYNIGFE-RGLNEWRKYLKKGGYLAVSECSWFTDERPA 160
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323
E W P + + V + + +N
Sbjct: 161 EINDFWMDA----------YPEIDTIPNQVAKIHKAGYLPVATFILPENC 200
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 8e-47
Identities = 38/203 (18%), Positives = 64/203 (31%), Gaps = 18/203 (8%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
E T + + T K + D+GCG GG + +LA + GI L P + N A
Sbjct: 32 EATRKAVSFINELTDDAK-IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAV 90
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
AD+V G PF + + DL+WS + ++ + + ++E ++ G I +
Sbjct: 91 KANCADRVKGITGSMDNLPFQNEELDLIWSEGAIYNIGFE-RGMNEWSKYLKKGGFIAVS 149
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
E W P + ++ +N
Sbjct: 150 EASWFTSERPAEIEDFWMDA----------YPEISVIPTCIDKMERAGYTPTAHFILPEN 199
Query: 323 ------VAPFWPAVIHSALTWKG 339
AP G
Sbjct: 200 CWTEHYFAPQDEVRETFMKEHAG 222
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 143 bits (363), Expect = 2e-41
Identities = 36/175 (20%), Positives = 65/175 (37%), Gaps = 10/175 (5%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
+ + K V+D G G + + G K GI +S +Q ++A + K++
Sbjct: 19 NESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNF--KLNIS 76
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
GD + PF D V+S + HM D + + E+ RV P G I +D
Sbjct: 77 KGDIRKLPFKDESMSFVYSYGTIFHMRKNDVKEAIDEIKRVLKPGGLACINFLTTKD--E 134
Query: 272 SEESLQPWEQELLKKICDAYYLP-AWCSTADYVKLLQS---LSLEDIKAEDWSQN 322
+ + ++ + ++ S + K + L ED E +
Sbjct: 135 RYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDRVVERINDG 189
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 8e-41
Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 34/237 (14%)
Query: 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
+ E +F + + ++I + + E + G+
Sbjct: 2 MSENKKKFDKKGAKNMDEISKTLFAPIY----------------PIIAENIINRFGI--- 42
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
+D+G G G S LAK+ + + S + A A L D++
Sbjct: 43 ---TAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQ 99
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
GD P D DL+ S S D + E+ R+ G I ++E
Sbjct: 100 GDVHNIPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIG-----GGFGNKE 154
Query: 275 SLQPWEQELLKKICDAYYLPA----WCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
E+++K D + + +L + + + + FW
Sbjct: 155 LRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEIILGDEG---FW 208
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 3e-37
Identities = 45/227 (19%), Positives = 84/227 (37%), Gaps = 33/227 (14%)
Query: 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTK 157
G E+Y + + ++ +++ +E L K
Sbjct: 2 GFKEYYRVFPTYTDINSQEYR------------------SRIETLEPLLMKYM------K 37
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ V+D+ CG+GG S L +G + G+ +S ++A A +R V F VGDA
Sbjct: 38 KRGKVLDLACGVGGFSFLLED-YGFEVVGVDISEDMIRKAREYAKSRES--NVEFIVGDA 94
Query: 218 LQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
+ F D FD V ++S H + ++ E+ RV P+G I+ R+L P +
Sbjct: 95 RKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLKE 154
Query: 276 LQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322
Q+ + +P ++ ++ W +
Sbjct: 155 SLVVGQK----YWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWGKT 197
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-36
Identities = 47/257 (18%), Positives = 94/257 (36%), Gaps = 44/257 (17%)
Query: 86 TMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEET 145
M+ E + +D S+ W + ++ S R+ + E+
Sbjct: 6 CMTK---FNWHESAEKKWDSSAEFW-----NQNSQEMWD-------SGSRSTIIPFFEQY 50
Query: 146 LRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+ K+ V+DVGCG G + L++ G K G+ +S V Q+ RG
Sbjct: 51 V----------KKEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKE----RG 95
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
+SF GD PF + QF+ + ++ S E + + ++E+ RV G I
Sbjct: 96 EGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYACIAILG 155
Query: 266 HRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED-----WS 320
P+ + + L K + W ++ +L++ + + +
Sbjct: 156 -----PTAKPRENSYPRLYGKDVVCNTMMPW----EFEQLVKEQGFKVVDGIGVYKRGVN 206
Query: 321 QNVAPFWPAVIHSALTW 337
+ + + +LT+
Sbjct: 207 EKMLGQLSTDLQQSLTF 223
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 5e-35
Identities = 56/257 (21%), Positives = 89/257 (34%), Gaps = 29/257 (11%)
Query: 120 HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK 179
HG+ E ++ + Q +E+ L P + V++ GCGIG + LAK
Sbjct: 8 HGYSEREA-----LRLSEQAETLEKLL-HHDTVYPPGAK---VLEAGCGIGAQTVILAKN 58
Query: 180 F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
A+ I +SP ++A G+ + V F + PF D FD ++ EH
Sbjct: 59 NPDAEITSIDISPESLEKARENTEKNGIKN-VKFLQANIFSLPFEDSSFDHIFVCFVLEH 117
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+ + + L +V P GTI ++ H E + E AY
Sbjct: 118 LQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIRVQAYMKGNSLV 177
Query: 299 TADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMP 358
LLQ E I+ E + L G +
Sbjct: 178 GRQIYPLLQESGFEKIRVEP--------------RMVYIDSSKPELVDGF----ILKTII 219
Query: 359 LMIEGYQKNLIKFAIIT 375
M+EG ++ +K II
Sbjct: 220 PMVEGVKEQSLKMQIIK 236
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 124 bits (312), Expect = 2e-33
Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 23/209 (11%)
Query: 127 SSVSVSDHR---AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK 183
++S S+HR R + ++D+G G G A+ G
Sbjct: 7 FTISESEHRIHNPFTEEKYATLGRVLRMKPGTR-----ILDLGSGSGEMLCTWARDHGIT 61
Query: 184 CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS 243
GI +S + +A A G++++V F DA + + D+ + + +
Sbjct: 62 GTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-ANEKCDVAACVGATWIAGGFA 120
Query: 244 KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303
LA+ P G ++I R L +EE Q + + V
Sbjct: 121 GAEELLAQSLKPGGIMLIGEPYWRQLPATEEIAQACG------VSSTSDFL---TLPGLV 171
Query: 304 KLLQSLSLEDIKA-----EDWSQNVAPFW 327
L + ++ E W + A W
Sbjct: 172 GAFDDLGYDVVEMVLADQEGWDRYEAAKW 200
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 107 bits (269), Expect = 2e-27
Identities = 29/157 (18%), Positives = 54/157 (34%), Gaps = 9/157 (5%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
F+ S + S +VD+GCG G R+ +
Sbjct: 9 QPDFFAGYSQLGRSIEGLDGAAEWPALRAMLPE-----VGGLRIVDLGCGFGWFCRWAHE 63
Query: 179 KFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238
+ G+ LS RA A G ++++ D + P FDL +S + +
Sbjct: 64 HGASYVLGLDLSEKMLARARAAGPDTG----ITYERADLDKLHLPQDSFDLAYSSLALHY 119
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES 275
+ D ++ + + +P G + T +AP+
Sbjct: 120 VEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPG 156
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 3e-27
Identities = 46/233 (19%), Positives = 73/233 (31%), Gaps = 31/233 (13%)
Query: 114 WGDHMHHGFYEPDSSVSVSDHRAAQV-RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172
+ FYE +V + R R ++ LR P V V CG
Sbjct: 83 ALAPLERVFYERLPAVLATRERHGHFRRALQRHLR-------PGCV---VASVPCGWMSE 132
Query: 173 SRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
L Q GI P A LAA LA +++ DA + + +DL+
Sbjct: 133 LLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTRE-GYDLL 191
Query: 231 WSMESGEHMPDKSKFVS---ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE------- 280
S + PD ++ + P G ++ P+ PW+
Sbjct: 192 TSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTP---PPALSPDSPWDMQAIDPH 248
Query: 281 ----QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPA 329
Q+L+ A + A L+ D++ ED + P A
Sbjct: 249 DLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFEDDRARLFPTVIA 301
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-26
Identities = 36/222 (16%), Positives = 76/222 (34%), Gaps = 17/222 (7%)
Query: 76 TRASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSD 133
+ S+ + + E+ E +FY ++ + W+ I D M G+ +S
Sbjct: 4 SHHHHHHSSGLVPRGSTSEVIEDEKQFYSKAKTYWKQIPPTVDGMLGGY------GHISS 57
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
R + G ++ T +D G GIG ++ L + + ++
Sbjct: 58 IDINSSRKFLQRFLREGPNKTGTSC---ALDCGAGIGRITKRLLLPLFREVDMVDITEDF 114
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELAR 251
+A G ++ +D++W H+ D+ ++F+
Sbjct: 115 LVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKG 173
Query: 252 VTAPAGTIIIVTWCHRD---LAPSEESLQPWEQELLKKICDA 290
P G I+I ++ L + S+ + + IC A
Sbjct: 174 SLRPNGIIVIKDNMAQEGVILDDVDSSVCRDLDVVRRIICSA 215
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 104 bits (260), Expect = 5e-26
Identities = 33/208 (15%), Positives = 62/208 (29%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A A +
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPV-- 141
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 142 -GKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 7e-26
Identities = 33/188 (17%), Positives = 63/188 (33%), Gaps = 22/188 (11%)
Query: 132 SDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP 191
S R +R++ + + + + D+G G GG S LA + G + S
Sbjct: 13 SQTRVPDIRIVNAIINLLNLPKGSV-----IADIGAGTGGYSVALANQ-GLFVYAVEPSI 66
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251
V A V + G A PD D V S+ + H K E+ R
Sbjct: 67 VM------RQQAVVHPQ-VEWFTGYAENLALPDKSVDGVISILAIHHFSHLEKSFQEMQR 119
Query: 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311
+ +++ + R + W + + + + + + LLQ +
Sbjct: 120 IIRDGTIVLLT-FDIRLAQ------RIWLYDYFPFLWE--DALRFLPLDEQINLLQENTK 170
Query: 312 EDIKAEDW 319
++A +
Sbjct: 171 RRVEAIPF 178
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-25
Identities = 42/190 (22%), Positives = 78/190 (41%), Gaps = 17/190 (8%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL 189
+ H + MI+ A + V+D+G G G ++ + +C G+
Sbjct: 2 AHHHHHHSLGLMIK----TAEC-----RAEHRVLDIGAGAGHTALAFSPY-VQECIGVDA 51
Query: 190 SPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSEL 249
+ + A++ A +G+ + V FQ G A PFPD FD++ + H D K V E+
Sbjct: 52 TKEMVEVASSFAQEKGV-ENVRFQQGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREV 110
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
ARV G ++V AP + L + L + ++ + S +++ + +
Sbjct: 111 ARVLKQDGRFLLVDHY----APEDPVLDEFVNHLNRLRDPSHVRES--SLSEWQAMFSAN 164
Query: 310 SLEDIKAEDW 319
L + W
Sbjct: 165 QLAYQDIQKW 174
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 5e-25
Identities = 35/194 (18%), Positives = 62/194 (31%), Gaps = 6/194 (3%)
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQ 193
RA + + + P +++G G G + L + G + +
Sbjct: 15 LRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIAR-GYRYIALDADA-- 71
Query: 194 AQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVT 253
A G+ KV DA P PD V + +PD K ++E RV
Sbjct: 72 AMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLWHLVPDWPKVLAEAIRVL 131
Query: 254 APAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313
P G ++ W + +P + W ++ + + L+ L L+
Sbjct: 132 KPGGALLEG-WDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKP 190
Query: 314 IKAE--DWSQNVAP 325
E W + P
Sbjct: 191 RTREVARWREERTP 204
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 97.7 bits (243), Expect = 2e-23
Identities = 38/223 (17%), Positives = 67/223 (30%), Gaps = 21/223 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+P ++VD GCG G L + GI A L F
Sbjct: 21 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLE 78
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV--TWCHRDLAPS 272
GDA + D ++D+ HM + ++ G II W +
Sbjct: 79 GDATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYL 137
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADY------VKLLQSLSLEDIKAEDWSQNVAPF 326
+ + E L + + + D L L +++I+ + F
Sbjct: 138 LDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIEC--RVSDKVNF 195
Query: 327 WPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLI 369
+ +H + SL G+ P + + + LI
Sbjct: 196 LDSNMHHNDKNDLYQSLKEEGIA------GDPGDKQQFVERLI 232
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 95.2 bits (237), Expect = 2e-23
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 17/169 (10%)
Query: 108 SLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167
+ W+++ ++ P S + + + A + + R ++D GC
Sbjct: 3 TTWKELTDNN-------PAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGC 55
Query: 168 GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF 227
G G YL+K+ G G L P + A+ + + VGD + F
Sbjct: 56 GQGRIGGYLSKQ-GHDVLGTDLDP------ILIDYAKQDFPEARWVVGDLSVDQISETDF 108
Query: 228 DLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
DL+ S + + ++ + R G +I R +
Sbjct: 109 DLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGAGRGWVFGD 157
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 4e-23
Identities = 27/179 (15%), Positives = 56/179 (31%), Gaps = 13/179 (7%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
+ DA I +FY E + P ++ + +++
Sbjct: 57 LDDAEMNHALSLIRKFYVNLGMKLEMEKAQEVIES-DSPWETLRSFYFYPRYLELLKNEA 115
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGG-SSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205
+R + V +G G + L+ +G + + + P A+ + + G
Sbjct: 116 ALGRF-----RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLG 170
Query: 206 LADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264
+ D V+ GD +FD++ K + + R II T+
Sbjct: 171 V-DGVNVITGDET--VIDGLEFDVLM---VAALAEPKRRVFRNIHRYVDTETRIIYRTY 223
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 7e-23
Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 28/246 (11%)
Query: 89 DAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+ R ++ + + + +++ W D + A + I
Sbjct: 3 EPIMRNPEDALLDSWHQNAQAWIDAVRHGAIESRRQVT--------DQAILLAILG---- 50
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++P+ V+D+GCG G R LA + G + G+ A A A
Sbjct: 51 --------RQPERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAAGAGEVH-- 99
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
S+ + +DL+ + + H D + +S + + P G ++I T
Sbjct: 100 LASYAQLAEA-KVPVGKDYDLICANFALLH-QDIIELLSAMRTLLVPGGALVIQTLHPWS 157
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCST-ADYVKLLQS--LSLEDIKAEDWSQNVAP 325
+A + E+ D +P + T A ++ L L L ++ Q+ P
Sbjct: 158 VADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLRLVSLQEPQHPQSAVP 217
Query: 326 FWPAVI 331
++
Sbjct: 218 QSLLMV 223
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 94.5 bits (235), Expect = 1e-22
Identities = 37/161 (22%), Positives = 60/161 (37%), Gaps = 19/161 (11%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177
M ++E S ++ + + ED ++D+GCG G S LA
Sbjct: 1 MPESYWEKVSGKNIPSSL------DLYPIIHNYLQED-----DEILDIGCGSGKISLELA 49
Query: 178 KKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233
K G GI ++ + A A + GL K F+V +A F D FD
Sbjct: 50 SK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108
Query: 234 ESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+PD +S+ + E+ RV P + +V +
Sbjct: 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLK 149
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 93.8 bits (233), Expect = 2e-22
Identities = 34/234 (14%), Positives = 68/234 (29%), Gaps = 36/234 (15%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P K V+D+GCG G Y A+ K GI LS A + + V ++
Sbjct: 41 PDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEA----KRKTTSPVVCYEQ 96
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
+++V S + ++ ++ +G+ I A +
Sbjct: 97 KAIEDIAIEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQ 156
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
E Y E ++ + + +
Sbjct: 157 DWYTDETGNKLHWPVDRYFN-----------------ESMRTSHFLGEDVQKY---HRTV 196
Query: 335 LTWKGFTSLLRTGLKTIK--------GALAMPLMIEGYQKNLIKFAIITCRKPR 380
T+ +LL+ G + +P M + Y++ + +I+ K
Sbjct: 197 TTY--IQTLLKNGFQINSVIEPEPAPELKDLPEMQDEYRRPM--MLLISATKQE 246
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 6e-22
Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 15/126 (11%)
Query: 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202
EE L + +VD GCG G +YL + K I ++ AL
Sbjct: 7 EEYLPNIFEGKK-----GVIVDYGCGNGFYCKYLLEF-ATKLYCIDINV------IALKE 54
Query: 203 ARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ +K + + + PD D + S M DK +SE+ R+ G +II+
Sbjct: 55 VK---EKFDSVITLSDPKEIPDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIII 111
Query: 263 TWCHRD 268
W +
Sbjct: 112 DWRKEN 117
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 92.2 bits (229), Expect = 1e-21
Identities = 52/265 (19%), Positives = 100/265 (37%), Gaps = 22/265 (8%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H HH Y V+ A+ + + ++ A + K + V+DV G G +
Sbjct: 8 HHHHHMY-------VTSQIHAKGSDLAKLMQIAAL-----KGNEEVLDVATGGGHVANAF 55
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
A K L+ + A A G V + GDA Q PF D +F +V +
Sbjct: 56 APF-VKKVVAFDLTEDILKVARAFIEGNGHQQ-VEYVQGDAEQMPFTDERFHIVTCRIAA 113
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
H P+ + FVSE RV G +++V P ++ + + K+ D + AW
Sbjct: 114 HHFPNPASFVSEAYRVLKKGGQLLLVDNSA----PENDAFDVFYNYVEKER-DYSHHRAW 168
Query: 297 CSTADYVKLLQSLSLEDIKAEDWSQNVA-PFWPAVIH-SALTWKGFTSLLRTGLKTIKGA 354
+D++K+L+ E + + + W ++ + + + +++
Sbjct: 169 -KKSDWLKMLEEAGFELEELHCFHKTFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQK 227
Query: 355 LAMPLMIEGYQKNLIKFAIITCRKP 379
+ + + ++ RKP
Sbjct: 228 FKIVVEDGRVYSFRGESILMKARKP 252
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 32/185 (17%), Positives = 65/185 (35%), Gaps = 13/185 (7%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV 192
D + + E+ L+ + + ++D+GCG G + +A+ GA+ G +
Sbjct: 37 DKHSFVWQYGEDLLQLLNP-----QPGEFILDLGCGTGQLTEKIAQS-GAEVLGTDNAA- 89
Query: 193 QAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARV 252
+ AR + F V DA D D V+S + + ++ + +
Sbjct: 90 -----TMIEKARQNYPHLHFDVADARNFRV-DKPLDAVFSNAMLHWVKEPEAAIASIHQA 143
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
G + ++ E+L + L A + S +YV +L+ +
Sbjct: 144 LKSGGRFVAEFGGKGNIKYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFD 203
Query: 313 DIKAE 317
A
Sbjct: 204 VTYAA 208
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 3e-21
Identities = 44/236 (18%), Positives = 77/236 (32%), Gaps = 38/236 (16%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ + L E +Y +S ++ + +M S AA R+
Sbjct: 1 MTTSHG--LIESQLSYYRARASEYDATFVPYMD------------SAAPAALERLRAG-- 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+V+++ G G +R+L+ + + S A A GL
Sbjct: 45 ----------NIRGDVLELASGTGYWTRHLSGL-ADRVTALDGSAEMI----AEAGRHGL 89
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW 264
D V F+ D PD Q+D V+ H+PD F + AP G + V
Sbjct: 90 -DNVEFRQQDLFDWT-PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDV 147
Query: 265 CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSLSLEDIKAE 317
+ ++ E + + + D S A+ + L +L E
Sbjct: 148 TDHERRLEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 92.1 bits (228), Expect = 8e-21
Identities = 40/260 (15%), Positives = 76/260 (29%), Gaps = 32/260 (12%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDE----SSSLWEDIWGDHMHHGFYEPDSSVSVSD 133
+ ++ + + + +++ +A++Y + S+ L ++D
Sbjct: 4 SCASGCQKSKNGGSTPSIRDHVADYYGKTLQSSADLKTSACKLAAAVPESHRKILADIAD 63
Query: 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSP 191
+ TL G E T V+D+GCG G +K G + G+ +
Sbjct: 64 EVLEKFYGCGSTLPADGSLEGAT-----VLDLGCGTGRDVYLASKLVGEHGKVIGVDMLD 118
Query: 192 VQAQRANALAA-------ARGLADKVSFQVGD------ALQQPFPDGQFDLVWSMESGEH 238
Q + A V F G A + PD D+V S
Sbjct: 119 NQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNL 178
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298
+K E+ RV G + + +L L
Sbjct: 179 STNKLALFKEIHRVLRDGGELYFSDVYADRRLSEA----AQQDPIL----YGECLGGALY 230
Query: 299 TADYVKLLQSLSLEDIKAED 318
D+ +L+ D++
Sbjct: 231 LEDFRRLVAEAGFRDVRLVS 250
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 88.7 bits (220), Expect = 8e-21
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 44/210 (20%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+AE Y+ W + A + R ++ L
Sbjct: 4 ASLAEAYE--------AWYGTPLGAY-----------VIAEEERALKGLLP--------- 35
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+++++VG G G R L + G+ S LA R A + ++
Sbjct: 36 -PGESLLEVGAGTGYWLRRLP---YPQKVGVEPSE------AMLAVGRRRAPEATWVRAW 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESL 276
PFP FD+V + E + D + + E RV P G +++
Sbjct: 86 GEALPFPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSP------W 139
Query: 277 QPWEQELLKKICDAYYLPAWCSTADYVKLL 306
+ L +K + + + D LL
Sbjct: 140 AALYRRLGEKGVLPWAQARFLAREDLKALL 169
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 89.0 bits (221), Expect = 1e-20
Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 7/107 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K K V+D+GC G + + G + GI P A A+ D V +
Sbjct: 31 KEWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFP------EAAEQAKEKLDHVVLGDIE 83
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
+ P+ + QFD V + EH+ D + ++ G I+
Sbjct: 84 TMDMPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILASI 130
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-20
Identities = 28/119 (23%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+P +D+GCG G +S YLA G + + + + L D + +V D
Sbjct: 32 KPGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDL 89
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
F D Q+D + S + K ++ + R T P G +IV P
Sbjct: 90 NNLTF-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTV 147
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 86.8 bits (215), Expect = 4e-20
Identities = 38/229 (16%), Positives = 66/229 (28%), Gaps = 45/229 (19%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M + ++ + + + W HR A + ++
Sbjct: 1 MGSDKIHHHHHHMWHIFERFVNEY-ERWFLV----------------HRFAYLSELQAVK 43
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
V++G G G + L K G + S AR
Sbjct: 44 CL--------LPEGRGVEIGVGTGRFAVPLKIKIG-----VEPSE------RMAEIAR-- 82
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
V G A P D FD + + + D + + E R+ G +I+
Sbjct: 83 KRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYLIVGI--- 139
Query: 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315
ES E E K+ Y + ST + + L++ E+ K
Sbjct: 140 ----VDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 6e-20
Identities = 34/215 (15%), Positives = 70/215 (32%), Gaps = 30/215 (13%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDP 155
+DE + + DS V D + +V E + + +
Sbjct: 2 GTEFNGLFDEWAHTY---------------DSFVQGEDIQYKEVFAHYEDI----LEDVV 42
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQV 214
K NV++ G G G + L G GI S A+ L + S
Sbjct: 43 NKSFGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSR------EMRMIAKEKLPKEFSITE 95
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
GD L D + S + H+ D K+ +++ +++ G I+ D
Sbjct: 96 GDFLSFEV-PTSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQDAY 154
Query: 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
+++++ +Q ++ + + + +
Sbjct: 155 DKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFE 189
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 85.7 bits (212), Expect = 2e-19
Identities = 40/171 (23%), Positives = 61/171 (35%), Gaps = 31/171 (18%)
Query: 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
+K EFYD + + D + Y HR + E
Sbjct: 10 HHHMKLRSWEFYDRIARAY-DSMYETPKWKLY----------HRLIGSFLEEYL------ 52
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
K P V+D+G G G S +L ++ G + + S L AR +
Sbjct: 53 -----KNPCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSK------EMLEVAREKG-VKN 99
Query: 212 FQVGDALQQPFPDGQFDLVWSMESG-EHMPDKSKFVSELARVTAPAGTIII 261
A PFP G F+ V ++ ++ +K K SE+ RV P G +I
Sbjct: 100 VVEAKAEDLPFPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 150
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 84.1 bits (208), Expect = 3e-19
Identities = 26/185 (14%), Positives = 55/185 (29%), Gaps = 32/185 (17%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
+ +++ Y + E + G + + R T
Sbjct: 3 DDVSKAYSSPTFDAEALLGTVISAEDPD----------RVLIEPW-------------AT 39
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
++DVG G G + +LA G + +G+ + + AR V+F G
Sbjct: 40 GVDGVILDVGSGTGRWTGHLASL-GHQIEGLEPAT------RLVELARQTHPSVTFHHGT 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
++ + + S HM + + L G +++ + L P
Sbjct: 93 ITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEPMYH 152
Query: 275 SLQPW 279
+
Sbjct: 153 PVATA 157
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 5e-19
Identities = 30/161 (18%), Positives = 51/161 (31%), Gaps = 10/161 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
P +R N D+GCG G S+ L ++ GI + L A +F
Sbjct: 30 PLERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDD------DMLEKAADRLPNTNFG 83
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
D P + DL+++ + +PD +S+L G + + +
Sbjct: 84 KADL-ATWKPAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQEPTHI 142
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLE 312
+ + K L +DY L S
Sbjct: 143 AMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSR 183
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 84.3 bits (208), Expect = 1e-18
Identities = 32/172 (18%), Positives = 55/172 (31%), Gaps = 21/172 (12%)
Query: 112 DIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171
D D M G ++ ++ + A I V K + ++++GCG G
Sbjct: 7 DYITDLMALGPTA--NARTIQRRQTAHRLAI---AEAWQV-----KPGEKILEIGCGQGD 56
Query: 172 SSRYLAKKFGAKCQ--GITLSPVQAQRANALAAAR------GLADKVSFQVGDAL---QQ 220
S LA + G+ GI ++ L A L D+++ L
Sbjct: 57 LSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLG 116
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
P D FD V S + + + A + + W + A
Sbjct: 117 PIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTALD 168
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 81.8 bits (202), Expect = 3e-18
Identities = 22/122 (18%), Positives = 43/122 (35%), Gaps = 14/122 (11%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---GLADKVS 211
+ N +++GC G + LA + I + P A+ A +S
Sbjct: 48 SSGAVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMP------RAIGRACQRTKRWSHIS 100
Query: 212 FQVGDALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRD 268
+ D LQ FDL+ E ++ D + + + ++ AP G ++ +
Sbjct: 101 WAATDILQFS-TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDAT 159
Query: 269 LA 270
Sbjct: 160 CR 161
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 81.6 bits (201), Expect = 1e-17
Identities = 41/214 (19%), Positives = 73/214 (34%), Gaps = 25/214 (11%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADK-VSF 212
K +VDVGCG G ++ +A++ Q G LS + A + K VSF
Sbjct: 34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSF 93
Query: 213 QVGDA------LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266
++ + + D++ ++E H D KF GTI I +
Sbjct: 94 KISSSDDFKFLGADSVDKQKIDMITAVECA-HWFDFEKFQRSAYANLRKDGTIAIWGYAD 152
Query: 267 -------------RDLAPSEESLQP-WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
++ ++ L P WEQ ++ + + + E
Sbjct: 153 PIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHLDPELFHDIQVSYFCAE 212
Query: 313 DIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRT 346
D++ + P +I +T F +RT
Sbjct: 213 DVRDKVKLHQHTK-KPLLIRKQVTLVEFADYVRT 245
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 4e-17
Identities = 30/115 (26%), Positives = 45/115 (39%), Gaps = 14/115 (12%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ V+D+GCG G + A G+ +S A+ AA +V+F V
Sbjct: 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSK------VAIKAAAKRYPQVTFCVAS 138
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
+ + PF D D + + + ELARV P G +I T R L
Sbjct: 139 SHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGPRHLME 186
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 5e-17
Identities = 40/250 (16%), Positives = 75/250 (30%), Gaps = 45/250 (18%)
Query: 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSP 191
+ R + ++ + +++D+G G G S +L +K+ A + +S
Sbjct: 19 EQRRKFIPCFDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE 78
Query: 192 VQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSEL 249
+ A KV + D + F + ++D+V S S H+ DK +
Sbjct: 79 KMLEIAKNRFRG---NLKVKYIEADYSKYDF-EEKYDMVVSALSIHHLEDEDKKELYKRS 134
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
+ +G I H + + + L K I Y L
Sbjct: 135 YSILKESGIFINADLVHGET--------AFIENLNKTIWRQY------------VENSGL 174
Query: 310 SLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLI 369
+ E+I A + L G + + K
Sbjct: 175 TEEEIAAGYERSKLDKDIEMNQQLNW-------LKEAGFRD----------VSCIYKYYQ 217
Query: 370 KFAIITCRKP 379
FA++ RK
Sbjct: 218 -FAVMFGRKT 226
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 5e-17
Identities = 44/178 (24%), Positives = 69/178 (38%), Gaps = 17/178 (9%)
Query: 118 MHHGFYEPDSSVSVSDHRAAQVRM--IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRY 175
+ H F D S +++ + E+ L+ G+ E T V+DVG G G Y
Sbjct: 3 LAHKF---DPSKIKKLDDPSRLELFDPEKVLKEFGLKEGMT-----VLDVGTGAGFYLPY 54
Query: 176 LAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233
L+K G K I + A GL + V + + P PD D ++
Sbjct: 55 LSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKN-VEVLKSEENKIPLPDNTVDFIFMA 113
Query: 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD---LAPSEESLQPWE-QELLKKI 287
+ + + KF+ EL RV P + I+ W + P EE WE +L+
Sbjct: 114 FTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGPPPEEVYSEWEVGLILEDA 171
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 77.6 bits (191), Expect = 5e-17
Identities = 20/132 (15%), Positives = 47/132 (35%), Gaps = 8/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
++ + G G ++ +LA G + + S V +A LA +G+ ++ +
Sbjct: 29 PQGKILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGVK--ITTVQSNL 85
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA-----PS 272
++ + S+ + + ++ + P G I+ + L P
Sbjct: 86 ADFDIVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPK 145
Query: 273 EESLQPWEQELL 284
+ L P + L
Sbjct: 146 DLDLLPKLETLQ 157
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 8e-17
Identities = 23/122 (18%), Positives = 36/122 (29%), Gaps = 6/122 (4%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P V+D+GCG G +S YL+ G + N L +S +
Sbjct: 117 KIISPCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTAL 173
Query: 215 GDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272
D +D + S + + + T G +IV D P
Sbjct: 174 YDINAANIQ-ENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPC 232
Query: 273 EE 274
Sbjct: 233 PL 234
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 75.1 bits (184), Expect = 7e-16
Identities = 25/125 (20%), Positives = 42/125 (33%), Gaps = 18/125 (14%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ ++ +GCG S L + S V A A ++ ++ D
Sbjct: 41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAHVP---QLRWETMD 97
Query: 217 ALQQPFPDGQFDLVWS---------------MESGEHMPDKSKFVSELARVTAPAGTIII 261
+ FP FD+V S E + + +SE++RV P G I
Sbjct: 98 VRKLDFPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFIS 157
Query: 262 VTWCH 266
+T
Sbjct: 158 MTSAA 162
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 9e-16
Identities = 23/117 (19%), Positives = 37/117 (31%), Gaps = 8/117 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADK---- 209
+ V+D+GCG G + L K + G+ +S + A L
Sbjct: 26 KQSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWER 85
Query: 210 VSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTW 264
+ G Q +D +E EH+ F L P +I+ T
Sbjct: 86 LQLIQGALTYQDKRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP-KIVIVTTP 141
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 74.3 bits (182), Expect = 2e-15
Identities = 25/162 (15%), Positives = 55/162 (33%), Gaps = 23/162 (14%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
WE W + +S+ + D + + L + +P ++D CG
Sbjct: 19 WEQYWNKTL------VNSTPVLWDANVERA--VVVDLPRFELLFNPELP---LIDFACGN 67
Query: 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDG 225
G +++L++ + G+ +S + A A +S+++ D L
Sbjct: 68 GTQTKFLSQF-FPRVIGLDVSKSALEIAAKENTAAN----ISYRLLDGLVPEQAAQIHSE 122
Query: 226 QFDLVWSMESGEH---MPDKSKFVSELARVTAPAGTIIIVTW 264
D M +G H + + L + G + ++
Sbjct: 123 IGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAMYLIEL 164
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 74.7 bits (183), Expect = 3e-15
Identities = 31/224 (13%), Positives = 69/224 (30%), Gaps = 33/224 (14%)
Query: 104 DESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
SL+ D F ++ S +++ L TK ++
Sbjct: 3 SSMRSLFSDH--GKYVESF---RRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKIL 57
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITL-------SPVQAQRANALAAARGLADKVSF---- 212
+G G G + K A+ G+ + S Q + L A + V F
Sbjct: 58 SIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHK 117
Query: 213 ----QVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
+ + + ++D + ++ ++ D + + ++I+
Sbjct: 118 ETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS- 176
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWC---STADYVKLLQSL 309
W++ L KK + C ++ D ++L +L
Sbjct: 177 --------SGWDK-LWKKYGSRFPQDDLCQYITSDDLTQMLDNL 211
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 3e-15
Identities = 33/194 (17%), Positives = 54/194 (27%), Gaps = 28/194 (14%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVG 166
S D + + +S D + L P R V++ G
Sbjct: 7 SRESYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLT-------PQTR---VLEAG 56
Query: 167 CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDG 225
CG G + + A+ SP L AR A + + P G
Sbjct: 57 CGHGPDAARFGPQ-AARWAAYDFSP------ELLKLARANAPHADVYEWNGKGELPAGLG 109
Query: 226 Q-FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP--WEQE 282
F L+ S + + L + AP + V ++ E L W+
Sbjct: 110 APFGLIVSRR------GPTSVILRLPELAAPDAHFLYVGP-RLNVPEVPERLAAVGWDIV 162
Query: 283 LLKKICDAYYLPAW 296
+ + P W
Sbjct: 163 AEDHVSVLAHAPTW 176
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} PDB: 1kpi_A* Length = 302 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 4e-15
Identities = 18/87 (20%), Positives = 34/87 (39%), Gaps = 7/87 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 76 LLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF- 134
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFV 246
D D + S+ + EH D +
Sbjct: 135 ----DEPVDRIVSLGAFEHFADGAGDA 157
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 72.8 bits (178), Expect = 6e-15
Identities = 20/109 (18%), Positives = 37/109 (33%), Gaps = 4/109 (3%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ GCG G +A G+ +S +AN + A+ SF D
Sbjct: 66 PLGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDV 124
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTW 264
P FDL++ + + + + + P G +I + +
Sbjct: 125 F-TWRPTELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY 172
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Length = 287 | Back alignment and structure |
|---|
Score = 71.4 bits (176), Expect = 3e-14
Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++DVGCG G + +K+ G+TLS QA L A +
Sbjct: 68 LLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF- 126
Query: 220 QPFPDGQFDLVWSMESGEH 238
D D + S+ + EH
Sbjct: 127 ----DEPVDRIVSIGAFEH 141
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 3e-14
Identities = 22/111 (19%), Positives = 41/111 (36%), Gaps = 14/111 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K + V+D+GCG G K+ G + G+ ++ + K + D
Sbjct: 40 KGCRRVLDIGCGRGEFLELC-KEEGIESIGVDINEDMIKFCEG---------KFNVVKSD 89
Query: 217 ALQ--QPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
A++ + PD D V EH+ + +S + I+I +
Sbjct: 90 AIEYLKSLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYIVIES 140
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Length = 318 | Back alignment and structure |
|---|
Score = 71.1 bits (175), Expect = 6e-14
Identities = 19/79 (24%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQ 219
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 94 LLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF- 152
Query: 220 QPFPDGQFDLVWSMESGEH 238
D + S+E+ EH
Sbjct: 153 ----AEPVDRIVSIEAFEH 167
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 69.1 bits (169), Expect = 7e-14
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 15/133 (11%)
Query: 131 VSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLS 190
+ A + +F ++++GCG G + + G S
Sbjct: 20 NATAYAERQPRSATLTKFL----GELPAGAKILELGCGAGYQAEAMLAA-GFDVDATDGS 74
Query: 191 PVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSE 248
P A A+ + Q D +D VW+ H+P + + +
Sbjct: 75 PELAAEASRRLGRP-------VRTMLFHQLDAID-AYDAVWAHACLLHVPRDELADVLKL 126
Query: 249 LARVTAPAGTIII 261
+ R P G
Sbjct: 127 IWRALKPGGLFYA 139
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-13
Identities = 44/266 (16%), Positives = 82/266 (30%), Gaps = 35/266 (13%)
Query: 87 MSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL 146
M+ ++A + A++ E + L++ + + + +
Sbjct: 1 MAHSSATAGPQ--ADYSGEIAELYDLVHQG--------------KGKDYHREAADLAALV 44
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
R + +++DV CG G R+LA +G+ LS + LA AR
Sbjct: 45 RRHSP------KAASLLDVACGTGMHLRHLADS-FGTVEGLELSA------DMLAIARRR 91
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIII- 261
GD +F V M S H+ ++ + A P G +++
Sbjct: 92 NPDAVLHHGDMRDFSLG-RRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDGVVVVE 150
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
W + P + E ++ +T V L + I + S
Sbjct: 151 PWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGITHHEESH 210
Query: 322 NVAPFWPAVIHSALTWKGFTSLLRTG 347
+ F A T G + G
Sbjct: 211 RITLFTREQYERAFTAAGLSVEFMPG 236
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 67.7 bits (165), Expect = 2e-13
Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 8/113 (7%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLAD----KVSF 212
K V+D+GCG G L K + G+ +S +RA L + ++S
Sbjct: 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISL 88
Query: 213 QVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVT 263
+ + +D +E EH+ F L T P T+I+ T
Sbjct: 89 FQSSLVYRDKRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP-QTVIVST 140
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 68.0 bits (166), Expect = 3e-13
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 10/111 (9%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-LADKVSFQ 213
P RP N++++G G + L + + S A++ A+G L D +++
Sbjct: 39 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 91
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVT 263
+ ++D + EH+ D + + A G + +V
Sbjct: 92 HSR-FEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVC 141
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 4e-13
Identities = 28/121 (23%), Positives = 46/121 (38%), Gaps = 5/121 (4%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
TKR +V+D+GCG GG + + G+ ++ V A A KV F+
Sbjct: 62 TKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQ 121
Query: 216 DALQQPF-PDGQFDLVWSMESGEHMPDKS----KFVSELARVTAPAGTIIIVTWCHRDLA 270
D+ + +FD++ S S + S +AR P G I+ +
Sbjct: 122 DSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVIL 181
Query: 271 P 271
Sbjct: 182 E 182
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 6e-12
Identities = 39/172 (22%), Positives = 64/172 (37%), Gaps = 33/172 (19%)
Query: 93 RELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVS 152
EL +AE+YD ++ A++ +EE +
Sbjct: 2 YELYTLLAEYYDT---IYRRRIERV------------------KAEIDFVEEIFKEDAK- 39
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
+ + V+D+ CG G + LA++ G + G+ L + A A R L K+ F
Sbjct: 40 ----REVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEF 92
Query: 213 QVGDALQQPFPDGQFDLVWSM-ESGEHM--PDKSKFVSELARVTAPAGTIII 261
GD L+ F +FD V + + D K S++A P G I
Sbjct: 93 LQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 8e-12
Identities = 38/217 (17%), Positives = 69/217 (31%), Gaps = 19/217 (8%)
Query: 136 AAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQ 195
AA+ I + +R +++DV CG G + K+ G+ LS
Sbjct: 24 AAEASDIADLVRSRT------PEASSLLDVACGTGTHLEHFTKE-FGDTAGLELSE---- 72
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELAR 251
+ L AR + GD +F V SM S + + V+ A
Sbjct: 73 --DMLTHARKRLPDATLHQGDMRDFRLG-RKFSAVVSMFSSVGYLKTTEELGAAVASFAE 129
Query: 252 VTAPAGTIIIVTWCHRD-LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310
P G +++ W + A S ++ ++ + +T V +
Sbjct: 130 HLEPGGVVVVEPWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADP 189
Query: 311 LEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTG 347
+ ++ + F A +A T G G
Sbjct: 190 GKGVRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEG 226
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 2e-11
Identities = 38/200 (19%), Positives = 63/200 (31%), Gaps = 18/200 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K + D+GCG G ++ LA + G+ LS + A A V F V D
Sbjct: 32 EPGKRIADIGCGTGTATLLLAD--HYEVTGVDLSEEMLEIAQEKAMETNR--HVDFWVQD 87
Query: 217 ALQQPFPDGQFDLVWSMESG----EHMPDKSKFVSELARVTAPAGTIII---VTWCHRDL 269
+ P+ D + + + D + AR+ G ++ + L
Sbjct: 88 MRELELPE-PVDAITILCDSLNYLQTEADVKQTFDSAARLLTDGGKLLFDVHSPYKMETL 146
Query: 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED--IKAEDWSQNVAPFW 327
+ EQ D P +L + ED D + + +
Sbjct: 147 FNGKTYATHAEQSSYIWFADPGEEPLSV----VHELTFFIEGEDGRYDRVDETHHQRTYP 202
Query: 328 PAVIHSALTWKGFTSLLRTG 347
P + L GF TG
Sbjct: 203 PEQYITWLREAGFRVCAVTG 222
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 63.7 bits (154), Expect = 4e-11
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 10/115 (8%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANA-----LAAARGLADKV 210
+VD GCG G L G+ +SP RA L
Sbjct: 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSA 780
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263
+ G L+ D+ +E EHM + +F ++ + P +I+ T
Sbjct: 781 TLYDGSILEFDSRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP-KLLIVST 834
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 3e-10
Identities = 35/280 (12%), Positives = 76/280 (27%), Gaps = 45/280 (16%)
Query: 78 ASSTTSTTTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAA 137
+ + ++ R + + +FYDE ++ D + D + +
Sbjct: 29 VRTPHADVLLASVGERGV---LCDFYDEGAA---DTYRDLIQDADGTSE----------- 71
Query: 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQ 195
E G V+++ G+G + G + + LS + A
Sbjct: 72 ----AREFATRTG------PVSGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAF 120
Query: 196 RANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHMPDKS--KFVSELARV 252
R A + D+ + GD +F V S + + + +
Sbjct: 121 RKRLAEAPADVRDRCTLVQGDMSAFALD-KRFGTVVISSGSINELDEADRRGLYASVREH 179
Query: 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312
P G ++ +P E++ + +Q +++
Sbjct: 180 LEPGGKFLLSLA-----MSEAAESEPLERKQELPGRSGRRY-VLHVRHLPAEEIQEITIH 233
Query: 313 DIKAEDWSQNVAP-----FWPAVIHSALTWKGFTSLLRTG 347
V P + L GF + +T
Sbjct: 234 PADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTP 273
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 8e-10
Identities = 27/169 (15%), Positives = 44/169 (26%), Gaps = 36/169 (21%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPT 156
A YD+ D I E +
Sbjct: 4 NKFAHIYDK----------------LIRADV------DYKKWSDFIIEKCVENNL----- 36
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ +D+ CG G + L K + LS A ++GL K D
Sbjct: 37 -VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQD 92
Query: 217 ALQQPFPDGQFDLVWSM-ESGEHMPDKS---KFVSELARVTAPAGTIII 261
+FDL+ +S ++ D K+ ++ G I
Sbjct: 93 ISNLNIN-RKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIF 140
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 27/153 (17%), Positives = 54/153 (35%), Gaps = 17/153 (11%)
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAK 178
G P+ V V +A M A + + P V+D+ G +A+
Sbjct: 126 SEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQ 185
Query: 179 KF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV------- 230
A+ G+ + V + A A +G+A + G A + + + +DLV
Sbjct: 186 HNPNAEIFGVDWASV-LEVAKENARIQGVASRYHTIAGSAFEVDYGND-YDLVLLPNFLH 243
Query: 231 -WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+ + + + ++ A G +I+
Sbjct: 244 HFDVA------TCEQLLRKIKTALAVEGKVIVF 270
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-09
Identities = 35/178 (19%), Positives = 44/178 (24%), Gaps = 46/178 (25%)
Query: 85 TTMSDAAARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ S AA R +E F H GF V V I
Sbjct: 19 SGPSSAAQRLFQEDPEAF-------------LLYHRGFQS-----QVKKWPLQPVDRIAR 60
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204
LR V D GCG LA L+ +
Sbjct: 61 DLR-------QRPASLVVADFGCGDC----RLASSIRNPVHCFDLASLD----------- 98
Query: 205 GLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
V D Q P D D+ S + F+ E RV P G + +
Sbjct: 99 -----PRVTVCDMAQVPLEDESVDVAVFCLS-LMGTNIRDFLEEANRVLKPGGLLKVA 150
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 5e-09
Identities = 35/191 (18%), Positives = 58/191 (30%), Gaps = 41/191 (21%)
Query: 89 DAAARELKEGIAEFYD-ESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR 147
AA + + ++ D E++ +W+ GD A + LR
Sbjct: 12 GVAAEGIPD---QYADGEAARVWQLYIGDTRSR--------------TAEYKAWLLGLLR 54
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV---QAQRANALAAAR 204
V+DV CG G S L ++ G + S A +
Sbjct: 55 --------QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKE 105
Query: 205 GLADKVSFQVGDALQQP---FPDGQFDLVWSM-ESGEHMPDKS-------KFVSELARVT 253
DK + + L FD V + S H+PD + +A +
Sbjct: 106 PAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMV 165
Query: 254 APAGTIIIVTW 264
P G ++I
Sbjct: 166 RPGGLLVIDHR 176
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Length = 241 | Back alignment and structure |
|---|
Score = 55.4 bits (133), Expect = 6e-09
Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 25/128 (19%)
Query: 107 SSLWEDIWGDHMHHGFYEPDSSV---SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVV 163
S + I D G++ SV +++H A R + + VV
Sbjct: 44 SRFDDGIKLDR--EGWF----SVTPEKIAEHIA---------GRVSQSFKCDV-----VV 83
Query: 164 DVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223
D CG+GG++ A + I + PV+ A A G+ADK+ F GD L
Sbjct: 84 DAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-S 141
Query: 224 DGQFDLVW 231
+ D+V+
Sbjct: 142 FLKADVVF 149
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 6e-09
Identities = 22/138 (15%), Positives = 43/138 (31%), Gaps = 13/138 (9%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDA-- 217
VVD CG G + +LA G + G + L D+V+
Sbjct: 26 VVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQN 85
Query: 218 ----LQQPFPDGQFDLVW----SMESGEHMPDKSKFVSELARVTAPAGTIIIVT-WCHRD 268
+ P F+L + + +S+ + G I +V +
Sbjct: 86 MDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYYGGDT 145
Query: 269 LAPSEESLQPWEQELLKK 286
+E + + + + +K
Sbjct: 146 GFEEKEKVLEFLKGVDQK 163
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 53.2 bits (127), Expect = 4e-08
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 16/133 (12%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL 206
+ + + V+ + G G A R N
Sbjct: 37 MYCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNS 96
Query: 207 ADKVSFQVGD-------------ALQQPFPDGQFDLV---WSMESGEHMPDKSKFVSELA 250
K + D ++++ F G+F+++ +++ H + ++ L+
Sbjct: 97 GIKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSFHPRHYATVMNNLS 156
Query: 251 RVTAPAGTIIIVT 263
+TA G ++I T
Sbjct: 157 ELTASGGKVLITT 169
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 23/164 (14%), Positives = 48/164 (29%), Gaps = 26/164 (15%)
Query: 110 WEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169
W I+ S + + PK ++D+G
Sbjct: 138 WPTIYEGLSQL---PEQVQKSWFGFDHFYSDQSFGKA----LEIVFSHHPKRLLDIGGNT 190
Query: 170 GGSSRYLAKKFGAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDAL--QQPFPDGQ 226
G + + + + + P Q + A ++++ + L PFP G
Sbjct: 191 GKWATQCVQYN-KEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTG- 248
Query: 227 FDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
FD V +S E + ++ +A+ + I+
Sbjct: 249 FDAVWMSQFLDCFSEE------EVISILTRVAQSIGKDSKVYIM 286
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 2e-07
Identities = 20/115 (17%), Positives = 38/115 (33%), Gaps = 17/115 (14%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R + V+D+ G G + ++ Q L A A L +V F +
Sbjct: 179 RARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTT-RDAARKTIHAHDLGGRVEFFEKN 237
Query: 217 ALQQPFPDG-QFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
L +G D+V + + + + A + P G ++I+
Sbjct: 238 LLDARNFEGGAADVVMLNDCLHYFDAR------EAREVIGHAAGLVKPGGALLIL 286
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* Length = 225 | Back alignment and structure |
|---|
Score = 49.9 bits (119), Expect = 3e-07
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG L ++ + Q A A GL +K+ ++
Sbjct: 14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLA 73
Query: 216 DALQQPFPDGQFDLV 230
+ L Q ++
Sbjct: 74 NGLAAFEETDQVSVI 88
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 37/160 (23%)
Query: 130 SVSDHRAAQVRMIEETLRF---AGV-SED-------------PTKRPKNVVDVGCGIGGS 172
+ SD + + + + L+F +GV S + +++D+GCG G
Sbjct: 7 TKSDVKIVEDILRGKKLKFKTDSGVFSYGKVDKGTKILVENVVVDKDDDILDLGCGYGVI 66
Query: 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAAR------GLAD-KVSFQVGDALQQPFPDG 225
LA + + T++ + + A+ A+ L + + D + D
Sbjct: 67 GIALADEVKS----TTMADINRR---AIKLAKENIKLNNLDNYDIRVVHSDLYENV-KDR 118
Query: 226 QFDLVWS---MESGEHMPDKSKFVSELARVTAPAGTIIIV 262
+++ + + + +G+ + + + E + G I +V
Sbjct: 119 KYNKIITNPPIRAGKEVLH--RIIEEGKELLKDNGEIWVV 156
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 3e-07
Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
R ++D+ G G L+ + AK G+ + A A A L D++
Sbjct: 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIE 105
Query: 215 GD--ALQQPFPDGQFDLV 230
D + P + D+V
Sbjct: 106 YDLKKITDLIPKERADIV 123
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 5e-07
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K ++DVG GIG S + K F + L N AA +G+AD++ D
Sbjct: 190 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGA-IDLVNENAAEKGVADRMRGIAVD 248
Query: 217 ALQQPFPDGQFDLV--------WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262
++ +P+ D V + + + + G ++I+
Sbjct: 249 IYKESYPEA--DAVLFCRILYSANEQ------LSTIMCKKAFDAMRSGGRLLIL 294
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Length = 280 | Back alignment and structure |
|---|
Score = 49.0 bits (116), Expect = 9e-07
Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 9/119 (7%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGIT--LSPVQAQRA--NALAAARGL 206
V E V++ G G G + L + G Q I+ A+ A N
Sbjct: 92 VHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQP 151
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D V D PDG D M + + ++R+ G +++
Sbjct: 152 PDNWRLVVSDLADSELPDGSVDRA-----VLDMLAPWEVLDAVSRLLVAGGVLMVYVAT 205
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Length = 275 | Back alignment and structure |
|---|
Score = 48.9 bits (116), Expect = 1e-06
Identities = 20/118 (16%), Positives = 35/118 (29%), Gaps = 8/118 (6%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
+++VG G G S Y+ K + ++A + V D +
Sbjct: 114 ILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSD-IA 172
Query: 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ 277
D +D V +PD V ++A + P + SL
Sbjct: 173 DFISDQMYDAV-----IADIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLS 225
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 48.8 bits (115), Expect = 1e-06
Identities = 24/139 (17%), Positives = 37/139 (26%), Gaps = 16/139 (11%)
Query: 147 RFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA--- 203
F KR V+D+GCG GG K K ++ V ++
Sbjct: 23 EFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKN 82
Query: 204 ---RGLADKVSFQVGDALQQPFPD------GQFDLVWSMES----GEHMPDKSKFVSELA 250
F D+ ++ D FD+ E +
Sbjct: 83 RRDSEYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNAC 142
Query: 251 RVTAPAGTIIIVTWCHRDL 269
+P G I T +L
Sbjct: 143 ERLSPGGYFIGTTPNSFEL 161
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 2e-06
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 11/89 (12%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV---QAQRANALAAARGLADKV 210
R + D+G G G + +A + A+ S A+R+ L + ++
Sbjct: 33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARI 92
Query: 211 SFQVGDA-------LQQPFPDGQFDLVWS 232
D ++ PD F V
Sbjct: 93 EVLEADVTLRAKARVEAGLPDEHFHHVIM 121
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} Length = 210 | Back alignment and structure |
|---|
Score = 46.8 bits (112), Expect = 2e-06
Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K+P+ VV G G+G +S + A+ + + + + A + GL D+V Q
Sbjct: 54 IKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQ 113
Query: 214 VGDALQQPFPDGQFDLV 230
VGD L D++
Sbjct: 114 VGDPLGIAAGQRDIDIL 130
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} SCOP: c.66.1.16 PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* Length = 236 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 3e-06
Identities = 27/148 (18%), Positives = 53/148 (35%), Gaps = 12/148 (8%)
Query: 126 DSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ 185
D++ + V ET ++ + + V++VG G+ ++ + + +
Sbjct: 28 DAADTHLRILGKPVMERWETPYMHALAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHW 87
Query: 186 GITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQPFPDGQFDLVW-----SMESGEH 238
I + QR A + KV G + PDG FD + E H
Sbjct: 88 IIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTYPLSEETWH 145
Query: 239 MPDKSKFVSELARVTAPAGTIIIVTWCH 266
+ + R+ P G ++T+C+
Sbjct: 146 THQFNFIKNHAFRLLKPGG---VLTYCN 170
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 3e-06
Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 13/119 (10%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSP--VQAQRANALAAARGLADKVS 211
P +VD+GCG G L K AK + SP V + R N D+
Sbjct: 219 PENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCE 278
Query: 212 FQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263
F + +AL +F+ V +++ + R G + IV
Sbjct: 279 FMINNALSGV-EPFRFNAVLCNPPFHQQHALTDNVAW--EMFHHARRCLKINGELYIVA 334
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} Length = 410 | Back alignment and structure |
|---|
Score = 47.5 bits (112), Expect = 4e-06
Identities = 22/134 (16%), Positives = 39/134 (29%), Gaps = 20/134 (14%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA-LAAARGLADKVSFQVGDAL 218
VVD+ G+G L K ++ I + A A + V+ GD
Sbjct: 95 TKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFK 153
Query: 219 Q--QPFPDGQFDLVW------------SMESGEHMPDKSKFVSELAR----VTAPAGTII 260
+ D ++ + PD +EL + A +I
Sbjct: 154 EYLPLIKTFHPDYIYVDPARRSGADKRVYAIADCEPDLIPLATELLPFCSSILAKLSPMI 213
Query: 261 IVTWCHRDLAPSEE 274
+ + L +E
Sbjct: 214 DLWDTLQSLLHVQE 227
|
| >1im8_A YECO; methyltransferase, adenosylhomocysteine, structural genomics hypothetical protein, structure 2 function project, S2F, TR; HET: SAI; 2.20A {Haemophilus influenzae RD} SCOP: c.66.1.14 Length = 244 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 4e-06
Identities = 23/151 (15%), Positives = 43/151 (28%), Gaps = 4/151 (2%)
Query: 133 DHRAAQVRMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGIT 188
D V + G ++E NV D+GC G ++ + K GI
Sbjct: 32 DMIQRSVPGYSNIITAIGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGID 91
Query: 189 LSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSE 248
S +R AA V D + ++ D+ +++
Sbjct: 92 NSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFTLQFLPPEDRIALLTK 151
Query: 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279
+ P G +++ + L
Sbjct: 152 IYEGLNPNGVLVLSEKFRFEDTKINHLLIDL 182
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 5e-06
Identities = 20/155 (12%), Positives = 53/155 (34%), Gaps = 14/155 (9%)
Query: 141 MIEETLRFAGVSEDPTKRPKN-VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
MI+ + + ++ VVD G G + +LA K + + +
Sbjct: 4 MIKRPIHMSHDFLAEVLDDESIVVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGKTSQ 62
Query: 200 LAAARGLADKVSF------QVGDALQQPFPDGQFDLVWSMESGEHMPDKS----KFVSEL 249
+ G+ + + +++P F+L + + + + K + + ++
Sbjct: 63 RLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKI 121
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSE-ESLQPWEQEL 283
G + I+ + D E +++ + L
Sbjct: 122 LDRLEVGGRLAIMIYYGHDGGDMEKDAVLEYVIGL 156
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Length = 255 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 6e-06
Identities = 22/126 (17%), Positives = 41/126 (32%), Gaps = 12/126 (9%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+V+ G G G + +LA G + + A+ A G D+V+ ++ D
Sbjct: 95 DFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKD- 153
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII----VTWCHRDLAPSE 273
+ + + D V +P + V A+ P G + R
Sbjct: 154 IYEGIEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLR 208
Query: 274 ESLQPW 279
E +
Sbjct: 209 EFKDYF 214
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 8e-06
Identities = 26/173 (15%), Positives = 45/173 (26%), Gaps = 14/173 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDA 217
+D+G G G + LA GI + + V F + A
Sbjct: 28 HIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAA 87
Query: 218 LQQPFP-DGQFDLV-----WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP 271
PF D + W + +S +A + VT
Sbjct: 88 ESLPFELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE 147
Query: 272 SEESLQPWEQELLKKICDAYYLPAWCS---TADYVKLLQSLSLEDIKAEDWSQ 321
+E + Y + D VK L + ++ W++
Sbjct: 148 AEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEYVK-QFNSLWAK 199
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} Length = 244 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 1e-05
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 1/75 (1%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ + + D+G + K A + Q A + GL +++ + G
Sbjct: 20 TKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKG 79
Query: 216 DALQQPFPDGQFDLV 230
+ L D +
Sbjct: 80 NGLAVIEKKDAIDTI 94
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} Length = 230 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 2e-05
Identities = 13/106 (12%), Positives = 31/106 (29%), Gaps = 3/106 (2%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVG 215
+ ++DVG +L + + Q A + GL K+ ++
Sbjct: 20 PKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLA 79
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
+ L D + G + ++ T+++
Sbjct: 80 NGLSAFEEADNIDTI--TICGMGGRLIADILNNDIDKLQHVKTLVL 123
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... Length = 221 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 2e-05
Identities = 18/82 (21%), Positives = 35/82 (42%), Gaps = 8/82 (9%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
P V+++G G S+ +A+ + +T+ +P A + GL DKV+
Sbjct: 57 YSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILN 116
Query: 215 GDA------LQQPFPDGQFDLV 230
G + L++ + D+V
Sbjct: 117 GASQDLIPQLKKKYDVDTLDMV 138
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4er3_A* 3sr4_A* Length = 438 | Back alignment and structure |
|---|
Score = 44.8 bits (105), Expect = 3e-05
Identities = 29/220 (13%), Positives = 68/220 (30%), Gaps = 38/220 (17%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPV------- 192
++ + + +++D VD+G G+G +A K G+ + +
Sbjct: 161 LVAQMIDEIKMTDDDL-----FVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAET 215
Query: 193 QAQRANALAAARGLAD-KVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSEL 249
+ G + + + GD L + + + +++ + + P+ + E
Sbjct: 216 MDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIF-VNNFAFGPEVDHQLKER 274
Query: 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309
G I+ + + AP + + I L S+
Sbjct: 275 FANMKE-GGRIVSS---KPFAPLNFRINSRNLSDIGTIMRVVELSPLK---------GSV 321
Query: 310 SLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLK 349
S W+ ++ I + F+SL L+
Sbjct: 322 S--------WTGKPVSYYLHTIDRTILENYFSSLKNPKLR 353
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292 | Back alignment and structure |
|---|
Score = 44.2 bits (103), Expect = 3e-05
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 2/72 (2%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
R ++V+D+GC +G + +A K+G G+ + A + +
Sbjct: 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEE-LRLPPQT 104
Query: 217 ALQQPFPDGQFD 228
P +G+
Sbjct: 105 LEGDPGAEGEEG 116
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* Length = 254 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 21/81 (25%), Positives = 31/81 (38%), Gaps = 18/81 (22%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAKCQGITLSP--VQAQRANALAAARGLADK 209
+ V+D+G G I A+K G K G+ + P + AN A G+ +
Sbjct: 119 RPGDKVLDLGTGSGVLAIA------AEKLGGKALGVDIDPMVLPQAEAN--AKRNGVRPR 170
Query: 210 VSFQVGDALQQPFPDGQFDLV 230
G P G FDL+
Sbjct: 171 F--LEGSLEAA-LPFGPFDLL 188
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 5e-05
Identities = 34/219 (15%), Positives = 56/219 (25%), Gaps = 48/219 (21%)
Query: 77 RASSTTSTTTMSDAAARELKEGIAEFY------------------DESSSLWEDIWGDHM 118
A S R + E + Y E + L + +
Sbjct: 115 EARREGEHPFTSPEVERRVGEALHRAYGVPVDLKRPAVRVRVDVRGEEAFLGVQLTERPL 174
Query: 119 HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS--RYL 176
F + S++ A + LR A V+D G G +
Sbjct: 175 SRRFPKAALRGSLTPVLAQAL------LRLADARPGMR-----VLDPFTGSGTIALEAAS 223
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV-----W 231
+ L + A A A GL + F DA P + D +
Sbjct: 224 TLGPTSPVYAGDLDEKRLGLAREAALASGL-SWIRFLRADARHLPRFFPEVDRILANPPH 282
Query: 232 SMESGEHMPDK-------SKFVSELARVTAPAGTIIIVT 263
G + K F+ + P G + ++T
Sbjct: 283 ----GLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Length = 433 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 8e-05
Identities = 25/97 (25%), Positives = 41/97 (42%), Gaps = 15/97 (15%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP--VQAQRA 197
+M+ L + V + V+D+ CG+G + LA + A G+ P V+ +
Sbjct: 273 KMVARALEWLDVQPE-----DRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQ 326
Query: 198 NALAAARGLADKVSFQVGDA----LQQPFPDGQFDLV 230
N A GL V+F + +QP+ FD V
Sbjct: 327 N--ARLNGL-QNVTFYHENLEEDVTKQPWAKNGFDKV 360
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Length = 192 | Back alignment and structure |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 26/100 (26%), Positives = 37/100 (37%), Gaps = 4/100 (4%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VDVGCG GG + LA + I +P GL D V+ GDA +
Sbjct: 37 AVDVGCGTGGVTLELAG-RVRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL 95
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D+ SG + + + + P G II+
Sbjct: 96 CKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRIIV 132
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} Length = 232 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 18/79 (22%), Positives = 32/79 (40%), Gaps = 5/79 (6%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
KN++++G IG SS A T+ + Q A A ++V
Sbjct: 69 MNNVKNILEIGTAIGYSSMQFAS-ISDDIHVTTIERNETMIQYAKQNLATYHFENQVRII 127
Query: 214 VGDALQ--QPFPDGQFDLV 230
G+AL+ + D +D++
Sbjct: 128 EGNALEQFENVNDKVYDMI 146
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 2e-04
Identities = 18/127 (14%), Positives = 39/127 (30%), Gaps = 20/127 (15%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA 207
R + V+D+G G G + LA+ + ++ + +
Sbjct: 223 LQERLGPEGVRGRQVLDLGAGYGALTLPLARMGAE----VVGVEDDLA---SVLSLQKGL 275
Query: 208 D----KVSFQVGDALQQPFPDGQFDLVWS-------MESGEHMPDKSKFVSELARVTAPA 256
+ K D + + +FD++ + + FV+ A P
Sbjct: 276 EANALKAQALHSDVDEALTEEARFDIIVTNPPFHVGGAVILDVAQ--AFVNVAAARLRPG 333
Query: 257 GTIIIVT 263
G +V+
Sbjct: 334 GVFFLVS 340
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} Length = 232 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K V+++G G S+ +A + Q I P A G+A+K+S +
Sbjct: 70 LTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLR 129
Query: 214 VGDA------LQQPFPDGQFDLV 230
+G A L Q P +FDL+
Sbjct: 130 LGPALATLEQLTQGKPLPEFDLI 152
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A Length = 176 | Back alignment and structure |
|---|
Score = 40.2 bits (93), Expect = 3e-04
Identities = 16/70 (22%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 194 AQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME-SGEHMPDKSKFVSELAR 251
+ L A G +VS + L Q + FD++ S G ++ ++E+AR
Sbjct: 30 KGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIAR 89
Query: 252 VTAPAGTIII 261
+ P G + +
Sbjct: 90 ILRPGGCLFL 99
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} Length = 225 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 8/83 (9%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
+ K V+D+G G S+ + IT A GL+DK+ +
Sbjct: 62 LMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLR 121
Query: 214 VGDA------LQQPFPDGQFDLV 230
+ A L Q+DL+
Sbjct: 122 LSPAKDTLAELIHAGQAWQYDLI 144
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 3e-04
Identities = 13/101 (12%), Positives = 31/101 (30%), Gaps = 24/101 (23%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKF-GAKCQGITLSPVQAQ 195
I + + + + +++G G + +A+KF K +
Sbjct: 41 TPISRYI----FLKTFLRGGEVALEIGTGHTAMMAL---MAEKFFNCKVTATEVDE---- 89
Query: 196 RANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230
AR ++ G + + +G FD++
Sbjct: 90 --EFFEYARRNIERNNSNVRLVKSNGGII-KGVVEGTFDVI 127
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Length = 237 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 14/84 (16%), Positives = 25/84 (29%), Gaps = 9/84 (10%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
K ++VG G S A + + + G+ K++F
Sbjct: 68 LVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFI 127
Query: 214 VGDAL-------QQPFPDGQFDLV 230
DA+ Q +G +D
Sbjct: 128 ESDAMLALDNLLQGQESEGSYDFG 151
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* Length = 247 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 4e-04
Identities = 14/83 (16%), Positives = 29/83 (34%), Gaps = 9/83 (10%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQV 214
KN +++G G S A + + + + + + G+ K+ F+
Sbjct: 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFRE 137
Query: 215 GDAL-------QQPFPDGQFDLV 230
G AL + G +D +
Sbjct: 138 GPALPVLDEMIKDEKNHGSYDFI 160
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 26/82 (31%), Positives = 34/82 (41%), Gaps = 19/82 (23%)
Query: 157 KRPKNVVDVGCG-----IGGSSRYLAKKFGAK-CQGITLSP--VQAQRANALAAARGLAD 208
+P V DVG G I A K GAK +S + A N AA G+ D
Sbjct: 59 VKPLTVADVGTGSGILAIA------AHKLGAKSVLATDISDESMTAAEEN--AALNGIYD 110
Query: 209 KVSFQVGDALQQPFPDGQFDLV 230
++ Q L DG+FDL+
Sbjct: 111 -IALQKTSLLAD--VDGKFDLI 129
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 40.7 bits (95), Expect = 4e-04
Identities = 25/138 (18%), Positives = 42/138 (30%), Gaps = 17/138 (12%)
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
K + VVD+ GIG S +A AK I P + + D++S
Sbjct: 121 KVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAY 180
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHM--PDKSK-FVSELARVTAPAGTIIIVTWCHRDLA 270
D P + D + M ++ F+ + + I
Sbjct: 181 NMDNRDFP-GENIADRI-------LMGYVVRTHEFIPKALSIAKDGAIIHYHNTVP---- 228
Query: 271 PSEESLQPWEQELLKKIC 288
E+ + E K+I
Sbjct: 229 --EKLMPREPFETFKRIT 244
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 40.1 bits (93), Expect = 5e-04
Identities = 23/191 (12%), Positives = 46/191 (24%), Gaps = 31/191 (16%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPV---QAQRANALAAARGL------- 206
V+ CG +L+ + G G LS +
Sbjct: 21 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 79
Query: 207 -ADKVSFQVGDALQ-QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIV 262
A + GD G + + +P + ++V L + A + +++
Sbjct: 80 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 139
Query: 263 TWCHRDLAPSEESLQPW---EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319
T + + P+ + L W V + A
Sbjct: 140 TLEYD---QALLEGPPFSVPQTWL-----HRVMSGNWE-----VTKVGGQDTLHSSARGL 186
Query: 320 SQNVAPFWPAV 330
+ V
Sbjct: 187 KAGLERMDEHV 197
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 6e-04
Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
VVDVG G GG L + L A A+ GL+ + VG
Sbjct: 173 VVDVGGGSGGLLSALLTAHEDLSGTVLDLQGP-ASAAHRRFLDTGLSGRAQVVVGS 227
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Length = 248 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 20/78 (25%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
+ K ++++G G S+ ++A++ A Q +TL AQ A G+ +V+ + G
Sbjct: 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREG 122
Query: 216 DA---LQQPFPDGQFDLV 230
A L+ FDL+
Sbjct: 123 PALQSLESLGECPAFDLI 140
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Length = 242 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 6e-04
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 8/81 (9%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQVG 215
R K V+++G G S+ ++ Q IT + + A+ K+ ++G
Sbjct: 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLG 119
Query: 216 DA------LQQPFPDGQFDLV 230
A L + QFD +
Sbjct: 120 PALDTLHSLLNEGGEHQFDFI 140
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} Length = 233 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 7e-04
Identities = 15/80 (18%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Query: 156 TKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL--SPVQAQRANALAAARGLADKVSFQ 213
P ++++G IG S+ +A+ + +++ + + A+ A GL ++
Sbjct: 52 MAAPARILEIGTAIGYSAIRMAQAL-PEATIVSIERDERRYEEAHKHVKALGLESRIELL 110
Query: 214 VGDA---LQQPFPDGQFDLV 230
GDA ++ FD++
Sbjct: 111 FGDALQLGEKLELYPLFDVL 130
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284 | Back alignment and structure |
|---|
Score = 39.8 bits (94), Expect = 8e-04
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 26/101 (25%)
Query: 141 MIEETLRFAGVSEDPTKRPKNVVDVGCG---IGGSSRYLAKKFGAKCQGITLSPVQAQRA 197
++E L K V D+G G IG S +AK A +S
Sbjct: 111 LVELALELI-----RKYGIKTVADIGTGSGAIGVS---VAKFSDAIVFATDVSS------ 156
Query: 198 NALAAAR------GLADKVSFQVGDALQQPFPD--GQFDLV 230
A+ AR G++D+ + G+ L +PF + +++
Sbjct: 157 KAVEIARKNAERHGVSDRFFVRKGEFL-EPFKEKFASIEMI 196
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343 | Back alignment and structure |
|---|
Score = 40.1 bits (94), Expect = 8e-04
Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----K 209
V+DVGCG G S A+ + +TL V A A+ A+R +
Sbjct: 193 TPHTKGKVLDVGCGAGVLSVAFARHSPKIR---LTLCDVSAP---AVEASRATLAANGVE 246
Query: 210 VSFQVGDALQQPFPDGQFDLVWS 232
+ + G+FD++ S
Sbjct: 247 GEVFASNVFSE--VKGRFDMIIS 267
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 8e-04
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 20/125 (16%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLR---FAGVSEDPTKRPKNVVDVGC 167
ED + PD+ A E R F G S VDVG
Sbjct: 130 EDFYSYLKRC----PDAGRRFLLAMKASNLAFHEIPRLLDFRGRS---------FVDVGG 176
Query: 168 GIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQ 226
G G ++ + + A+ + A ++ ++VS GD LQ+ +G
Sbjct: 177 GSGELTKAILQAEPSARGVMLDREGS-LGVARDNLSSLLAGERVSLVGGDMLQEVPSNG- 234
Query: 227 FDLVW 231
D+
Sbjct: 235 -DIYL 238
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 100.0 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 100.0 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.97 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.96 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.96 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.94 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.94 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.93 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.92 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.92 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.91 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.91 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.9 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.9 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.9 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.89 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.88 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.88 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.88 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.88 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.88 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.88 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.88 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.87 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.87 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.87 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.86 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.86 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.86 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.86 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.86 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.85 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.85 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.85 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.84 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.84 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.84 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.84 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.84 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.83 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.83 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.83 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.82 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.82 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.82 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.82 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.81 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.81 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.81 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.81 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.81 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.81 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.8 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.8 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.8 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.8 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.8 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.8 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.8 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.8 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.8 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.79 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.79 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.79 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.79 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.78 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.78 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.77 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.77 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.77 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.77 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.76 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.76 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.76 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.76 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.76 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.75 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.75 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.75 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.74 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.74 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.74 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.74 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.74 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.74 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.74 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.73 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.73 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.73 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.73 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.72 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.72 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.72 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.72 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.72 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.7 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.7 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.69 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.68 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.68 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.68 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.68 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.68 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.68 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.67 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.67 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.67 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.67 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.67 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.67 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.67 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.66 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.66 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.66 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.65 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.65 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.65 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.65 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.65 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.65 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.64 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.64 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.64 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.64 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.64 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.64 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.64 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.63 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.63 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.62 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.61 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.61 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.61 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.61 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.61 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.6 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.6 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.6 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.59 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.59 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.59 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.59 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.59 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.58 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.58 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.58 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.58 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.58 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.58 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.58 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.58 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.58 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.58 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.57 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.57 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.57 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.57 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.57 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.57 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.56 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.56 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.56 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.56 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.56 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.55 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.54 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.54 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.54 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.54 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.54 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.54 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.53 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.53 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.53 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.52 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.52 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.52 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.52 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.52 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.51 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.51 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.51 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.51 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.51 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.5 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.5 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.49 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.48 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.47 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.47 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.47 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.46 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.46 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.46 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.45 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.45 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.45 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.44 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.44 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.43 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.43 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.41 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.4 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.39 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.39 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.35 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.35 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.35 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.34 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.34 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.34 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.33 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.33 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.32 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.31 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.31 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.31 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.31 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.31 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.3 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.3 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.3 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.29 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.28 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.28 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.27 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.26 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.26 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.26 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.25 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.24 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.24 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.23 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.23 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 99.23 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.23 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.22 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.21 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.2 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.18 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.16 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.16 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.15 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 99.13 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.13 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.1 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.07 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.06 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.06 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 99.01 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.01 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.99 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.99 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.95 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.95 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.94 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.93 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.92 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.89 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.87 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.85 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.85 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.83 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.78 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.76 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.74 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.72 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.72 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.67 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.65 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.65 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.6 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.59 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.47 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.46 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.37 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.35 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.17 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.16 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.15 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.13 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 98.05 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.05 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.98 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.88 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 97.85 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.84 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.81 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.59 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.5 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 97.3 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.24 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.23 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.18 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.17 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 96.48 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 96.4 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.2 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.98 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.62 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 95.6 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.6 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.58 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 95.54 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.52 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 95.52 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 95.43 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.42 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.39 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.2 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.02 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.99 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.95 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 94.81 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 94.79 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.77 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.69 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.66 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 94.61 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 94.56 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.55 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 94.44 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.36 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 94.23 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 94.14 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.13 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 94.11 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.1 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 94.08 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 94.03 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 94.01 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.99 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.93 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.88 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.87 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 93.85 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.84 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.81 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 93.72 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.6 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.57 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 93.55 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.42 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 93.36 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.35 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 93.26 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.19 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 93.12 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 93.1 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.07 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.96 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 92.95 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 92.93 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 92.54 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 92.49 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 92.49 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 92.46 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 92.43 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.38 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 92.35 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.22 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 91.96 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 91.76 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 91.72 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.64 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 91.56 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 91.46 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 91.4 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 91.34 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 91.17 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.06 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.0 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 90.92 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 90.89 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 90.63 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 90.52 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.5 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 90.37 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 90.28 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.16 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 89.59 | |
| 4f3n_A | 432 | Uncharacterized ACR, COG1565 superfamily; structur | 89.57 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 89.52 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.35 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.08 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 89.01 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 88.95 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 88.91 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.81 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 88.73 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 88.36 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 88.31 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 88.17 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 87.88 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 87.84 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 87.69 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.3 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 87.17 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 86.81 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 86.79 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 86.55 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 86.48 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 86.43 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 86.39 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 86.24 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 86.21 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 85.45 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 85.13 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 85.02 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 84.89 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 84.76 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 84.27 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 84.2 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 83.98 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 83.97 | |
| 1gu7_A | 364 | Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s | 83.91 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 83.88 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 83.81 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 83.38 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 83.26 | |
| 1zsy_A | 357 | Mitochondrial 2-enoyl thioester reductase; medium- | 83.01 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 82.69 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 82.61 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 81.82 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 81.79 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 81.76 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 81.53 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.15 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 81.05 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 80.98 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 80.31 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 80.27 |
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-32 Score=248.09 Aligned_cols=266 Identities=26% Similarity=0.409 Sum_probs=189.9
Q ss_pred HHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHH
Q 016921 97 EGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176 (380)
Q Consensus 97 ~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l 176 (380)
++++++||..++.|+.++++.+|++||...... ......+.++++.+++.+.+.+ +.+|||||||+|.++..+
T Consensus 7 ~~~~~~Yd~~~~~y~~~~~~~~~~~y~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l 79 (273)
T 3bus_A 7 EEVRQMYDDFTDPFARIWGENLHFGYWEDAGAD--VSVDDATDRLTDEMIALLDVRS-----GDRVLDVGCGIGKPAVRL 79 (273)
T ss_dssp ----------------CCGGGCCCCCCCCSSCC--CCHHHHHHHHHHHHHHHSCCCT-----TCEEEEESCTTSHHHHHH
T ss_pred HHHHHHHcchHHHHHHHcCCCceEEecCCCccc--cCHHHHHHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHH
Confidence 458899999999999999999999999765421 2367778888899999887654 899999999999999999
Q ss_pred HHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCC
Q 016921 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPA 256 (380)
Q Consensus 177 ~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg 256 (380)
++..+.+|+|+|+|+.+++.+++++...++.+++.++++|+.++++++++||+|++..+++|++++..+++++.++||||
T Consensus 80 ~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pg 159 (273)
T 3bus_A 80 ATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESLHHMPDRGRALREMARVLRPG 159 (273)
T ss_dssp HHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEE
T ss_pred HHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCC
Confidence 98778899999999999999999999888878899999999999988899999999999999999999999999999999
Q ss_pred cEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhh
Q 016921 257 GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT 336 (380)
Q Consensus 257 G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~ 336 (380)
|++++.++...... .......+..+........+++.+++.++|+++||++++++.+..+...++..+......
T Consensus 160 G~l~i~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (273)
T 3bus_A 160 GTVAIADFVLLAPV------EGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDISAQARPSLVKTAEAFEN 233 (273)
T ss_dssp EEEEEEEEEESSCC------CHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEECHHHHTTHHHHHHHHHHH
T ss_pred eEEEEEEeeccCCC------ChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEECcHhHHHHHHHHHHHHHH
Confidence 99999987643311 111112222222223334467999999999999999999998887766555544433221
Q ss_pred h-hhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecC
Q 016921 337 W-KGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379 (380)
Q Consensus 337 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP 379 (380)
. ..+. ..............+...+..+.++|++++||||
T Consensus 234 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp 273 (273)
T 3bus_A 234 ARSQVE----PFMGAEGLDRMIATFRGLAEVPEAGYVLIGARKP 273 (273)
T ss_dssp THHHHH----HHHCHHHHHHHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred hHHHHH----hhcCHHHHHHHHHHHHHHhhCCCeeEEEEEEECC
Confidence 1 1111 1111111222233344445778999999999998
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=248.91 Aligned_cols=270 Identities=24% Similarity=0.398 Sum_probs=202.3
Q ss_pred HHHHHHHHHHHhccc--hhhHHHhhc-ccccccccCCCCCCCcccHHHHHHHHHHHHHHHc----CCCCCCCCCCCEEEE
Q 016921 92 ARELKEGIAEFYDES--SSLWEDIWG-DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFA----GVSEDPTKRPKNVVD 164 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~--~~~y~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~----~~~~~~~~~~~~vLD 164 (380)
.....+.+.++||.. .++|+.+|+ +++|++||..... .......+.+.++.++..+ .+.+ +.+|||
T Consensus 16 ~~~~~~~~~~~Yd~~~~~~~y~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~~~~~~~-----~~~vLD 88 (297)
T 2o57_A 16 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVD--QDEIREASLRTDEWLASELAMTGVLQR-----QAKGLD 88 (297)
T ss_dssp CHHHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGG--GSCHHHHHHHHHHHHHHHHHHTTCCCT-----TCEEEE
T ss_pred HHHHHHHHHHHcCCccchhHHHHHhCCCceEEEecCCCCC--CcchHHHHHHHHHHHHHHhhhccCCCC-----CCEEEE
Confidence 455667899999997 489988885 7889999976410 1126677788888888877 5544 889999
Q ss_pred ECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHH
Q 016921 165 VGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSK 244 (380)
Q Consensus 165 iGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~ 244 (380)
||||+|.++..+++..+.+|+|+|+|+.+++.|+++....++.+++.++++|+.++|+++++||+|++..+++|++++..
T Consensus 89 iGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~ 168 (297)
T 2o57_A 89 LGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLK 168 (297)
T ss_dssp ETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHH
T ss_pred eCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEecchhhhcCCHHH
Confidence 99999999999999778899999999999999999998888888999999999999988899999999999999999999
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcC
Q 016921 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (380)
Q Consensus 245 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 324 (380)
+++++.++|||||++++.++......+. .. .... ......+.+.+.+++.++|+++||+++++..+...+.
T Consensus 169 ~l~~~~~~LkpgG~l~~~~~~~~~~~~~-~~----~~~~----~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 239 (297)
T 2o57_A 169 VFQECARVLKPRGVMAITDPMKEDGIDK-SS----IQPI----LDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLV 239 (297)
T ss_dssp HHHHHHHHEEEEEEEEEEEEEECTTCCG-GG----GHHH----HHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHH
T ss_pred HHHHHHHHcCCCeEEEEEEeccCCCCch-HH----HHHH----HHHhcCCCCCCHHHHHHHHHHCCCeEEEEEECchhhH
Confidence 9999999999999999998765432211 11 1111 2222334467899999999999999999988876655
Q ss_pred CchHHHHHhhhhhhhhHHHHhhchhh---hhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 325 PFWPAVIHSALTWKGFTSLLRTGLKT---IKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
.+|.......... ...+...... ......+..+..+.+.|.+.|.+++||||+
T Consensus 240 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~Kp~ 295 (297)
T 2o57_A 240 HHYSKVKAELIKR---SSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKSD 295 (297)
T ss_dssp HHHHHHHHHHHHT---HHHHTTTSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHh---HHHHhccCCHHHHHHHHHHHHHHHHhccCCeEEEEEEEEECCC
Confidence 5444333222111 1101111111 111222334455567889999999999995
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-28 Score=224.73 Aligned_cols=269 Identities=16% Similarity=0.126 Sum_probs=192.7
Q ss_pred HHHHHHHHhccchhhHHHhhccc--ccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 016921 95 LKEGIAEFYDESSSLWEDIWGDH--MHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (380)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (380)
.+++++.+||..+++|..++++. ++.+||..... ....++.+.++.++..+.+.+ +.+|||||||+|.+
T Consensus 8 ~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~G~~ 78 (287)
T 1kpg_A 8 HFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDM----TLQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGAT 78 (287)
T ss_dssp CHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHH
T ss_pred cHHHHHHhcCCCHHHHHHhcCCCCCcceEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEECCcccHH
Confidence 35579999999999999988876 44678875432 267788888888888776654 88999999999999
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC--CCHHHHHHHHH
Q 016921 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELA 250 (380)
Q Consensus 173 ~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~ 250 (380)
+..+++..+.+|+|+|+|+.+++.+++++...++..++.++++|+.+++ ++||+|++..+++|+ .++..+++++.
T Consensus 79 ~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~ 155 (287)
T 1kpg_A 79 MMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAH 155 (287)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHH
T ss_pred HHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC---CCeeEEEEeCchhhcChHHHHHHHHHHH
Confidence 9999976688999999999999999999988888779999999998765 789999999999999 67899999999
Q ss_pred HhcCCCcEEEEEeccCCCCCCC---ccccch---HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcC
Q 016921 251 RVTAPAGTIIIVTWCHRDLAPS---EESLQP---WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA 324 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~ 324 (380)
++|||||.+++.++........ ...... ....++... .+....+++.+++.++++++||+++++..+..+..
T Consensus 156 ~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y~ 233 (287)
T 1kpg_A 156 RLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE--IFPGGRLPSIPMVQECASANGFTVTRVQSLQPHYA 233 (287)
T ss_dssp HHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH--TSTTCCCCCHHHHHHHHHTTTCEEEEEEECHHHHH
T ss_pred HhcCCCCEEEEEEecCCCccccccccccccccccchhhhHHhe--eCCCCCCCCHHHHHHHHHhCCcEEEEEEeCcHhHH
Confidence 9999999999998754331100 000000 011111111 11112346899999999999999999987766543
Q ss_pred CchHHHHHhhhh-hhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 325 PFWPAVIHSALT-WKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 325 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
+....+...... +..+...... ....+....+..+..+++.|.+.++.++++|
T Consensus 234 ~~~~~w~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~f~~g~~~~~~~~~~k 287 (287)
T 1kpg_A 234 KTLDLWSAALQANKGQAIALQSE-EVYERYMKYLTGCAEMFRIGYIDVNQFTCQK 287 (287)
T ss_dssp HHHHHHHHHHHHTHHHHHHHSCH-HHHHHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence 322222221111 1111111000 1111223335567788899999999999987
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.6e-28 Score=223.24 Aligned_cols=271 Identities=15% Similarity=0.129 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhccchhhHHHhhcccc--cccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc
Q 016921 92 ARELKEGIAEFYDESSSLWEDIWGDHM--HHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt 169 (380)
+...+++|+++||..+++|..++++.+ +.+||..... ....++.+.++.++..+.+.+ +.+|||||||+
T Consensus 13 ~~~~~~~i~~~Yd~~~~~y~~~l~~~~~y~~~~~~~~~~----~l~~a~~~~~~~~~~~~~~~~-----~~~vLDiGcG~ 83 (302)
T 3hem_A 13 LKPPVEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGW 83 (302)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTT
T ss_pred ccchHHHHHHhcCCCHHHHHHhcCCCCceeeEEecCCCC----CHHHHHHHHHHHHHHHcCCCC-----cCEEEEeeccC
Confidence 345678899999999999999999755 4578875542 267888889999999887654 89999999999
Q ss_pred ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH-------
Q 016921 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK------- 242 (380)
Q Consensus 170 G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~------- 242 (380)
|.++..+++.++.+|+|+|+|+.+++.|++++...+++.++.++++|+.++ +++||+|++..+++|++++
T Consensus 84 G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~fD~v~~~~~~~~~~d~~~~~~~~ 160 (302)
T 3hem_A 84 GSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF---DEPVDRIVSLGAFEHFADGAGDAGFE 160 (302)
T ss_dssp SHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC---CCCCSEEEEESCGGGTTCCSSCCCTT
T ss_pred cHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc---CCCccEEEEcchHHhcCccccccchh
Confidence 999999999878999999999999999999999989888999999999876 6899999999999999665
Q ss_pred --HHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc-cc--chH---HHHHHHHH-hhccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 243 --SKFVSELARVTAPAGTIIIVTWCHRDLAPSEE-SL--QPW---EQELLKKI-CDAYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 243 --~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~-~~--~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
..+++++.++|||||++++.++.......... .. ... ...++... .... .+.+.+++.++++++||++
T Consensus 161 ~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~s~~~~~~~l~~aGf~~ 237 (302)
T 3hem_A 161 RYDTFFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGG---RLPRISQVDYYSSNAGWKV 237 (302)
T ss_dssp HHHHHHHHHHHSSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTC---CCCCHHHHHHHHHHHTCEE
T ss_pred HHHHHHHHHHHhcCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCCCC---CCCCHHHHHHHHHhCCcEE
Confidence 79999999999999999999876432110000 00 000 00111111 1111 3468999999999999999
Q ss_pred EEEEecCCCcCCchHHHHHhhhh-hhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 314 IKAEDWSQNVAPFWPAVIHSALT-WKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 314 v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
++++.+..+.......+...... +..+..+....+.. .-...+.....+++.|.+..+.++++|
T Consensus 238 ~~~~~~~~~y~~tl~~w~~~~~~~~~~~~~~~~~~~~~-~w~~yl~~~~~~f~~~~~~~~q~~~~~ 302 (302)
T 3hem_A 238 ERYHRIGANYVPTLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDLFRDKYTDVCQFTLVK 302 (302)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHTHHHHHHHHCHHHHH-HHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred EEEEeCchhHHHHHHHHHHHHHHhHHHHHHHhCHHHHH-HHHHHHHHHHHHHhCCCCeEEEEEEEC
Confidence 99998887754333222222211 12222222111111 122334556678899999999999887
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-27 Score=221.64 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=189.4
Q ss_pred HHHHHHHHHHHhccchhhHHHhhccccc--ccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCc
Q 016921 92 ARELKEGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGI 169 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt 169 (380)
....+++++++||..+++|..++++.++ .++|..... .....+.+.++.++..+.+.+ +.+|||||||+
T Consensus 31 ~~~~~~~i~~~Yd~~~~~~~~~~~~~~~y~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~-----~~~vLDiGcG~ 101 (318)
T 2fk8_A 31 TRTRFEDIQAHYDVSDDFFALFQDPTRTYSCAYFEPPEL----TLEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGW 101 (318)
T ss_dssp -------CGGGGCCCHHHHTTTSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTT
T ss_pred hhhhHHHHHHhcCCCHHHHHHHcCCCCCcceeeeCCCCC----CHHHHHHHHHHHHHHhcCCCC-----cCEEEEEcccc
Confidence 3556778999999999999998887544 578875432 267778888888888776654 88999999999
Q ss_pred ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCC--CCHHHHHH
Q 016921 170 GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVS 247 (380)
Q Consensus 170 G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~--~~~~~~l~ 247 (380)
|.++..+++..+++|+|+|+|+.+++.|+++....++.+++.++++|+.+++ ++||+|++..+++|+ +++..+++
T Consensus 102 G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~fD~v~~~~~l~~~~~~~~~~~l~ 178 (318)
T 2fk8_A 102 GTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA---EPVDRIVSIEAFEHFGHENYDDFFK 178 (318)
T ss_dssp SHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC---CCCSEEEEESCGGGTCGGGHHHHHH
T ss_pred hHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC---CCcCEEEEeChHHhcCHHHHHHHHH
Confidence 9999999987788999999999999999999988888778999999998874 789999999999999 67899999
Q ss_pred HHHHhcCCCcEEEEEeccCCCCCCCcc-ccc--hHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 248 ELARVTAPAGTIIIVTWCHRDLAPSEE-SLQ--PWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 248 ~~~r~LkpgG~l~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
++.++|||||.+++.++.......... .+. .........+... +....+.+.+++.++++++||+++++..+..+.
T Consensus 179 ~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 258 (318)
T 2fk8_A 179 RCFNIMPADGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRLPSTEMMVEHGEKAGFTVPEPLSLRPHY 258 (318)
T ss_dssp HHHHHSCTTCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCCCCHHHHHHHHHHTTCBCCCCEECHHHH
T ss_pred HHHHhcCCCcEEEEEEeccCCchhhhhccccccccccchhhHHHHhcCCCCcCCCHHHHHHHHHhCCCEEEEEEecchhH
Confidence 999999999999999876433110000 000 0000000111111 111234689999999999999999888766543
Q ss_pred CCchHHHHHhhh-hhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 324 APFWPAVIHSAL-TWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
......+..... .+..+.......+. ......+..+..+++.|.+.++.++++||.
T Consensus 259 ~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~f~~g~~~~~~~~~~k~~ 315 (318)
T 2fk8_A 259 IKTLRIWGDTLQSNKDKAIEVTSEEVY-NRYMKYLRGCEHYFTDEMLDCSLVTYLKPG 315 (318)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSCHHHH-HHHHHHHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHHHCCCCeEEEEEEEeCC
Confidence 322111111111 11111111111111 111223445677888999999999999984
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=207.76 Aligned_cols=221 Identities=20% Similarity=0.356 Sum_probs=157.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.+..++..+.+. ++.+|||||||+|.++..+++.++.+|+|+|+|+.+++.++++.... .+++++++|+.++
T Consensus 43 ~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~ 114 (266)
T 3ujc_A 43 ATKKILSDIELN-----ENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGN---NKIIFEANDILTK 114 (266)
T ss_dssp HHHHHTTTCCCC-----TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSC---TTEEEEECCTTTC
T ss_pred HHHHHHHhcCCC-----CCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcC---CCeEEEECccccC
Confidence 455666665554 48899999999999999999977889999999999999999876433 5899999999999
Q ss_pred CCCCCCccEEEeccccCCC--CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 221 PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
++++++||+|++..+++|+ .++..+++++.++|||||.+++.++...... .+.......+.. .+ ..+++
T Consensus 115 ~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~----~~~~~~~~~~~~----~~-~~~~~ 185 (266)
T 3ujc_A 115 EFPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKE----NWDDEFKEYVKQ----RK-YTLIT 185 (266)
T ss_dssp CCCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGG----GCCHHHHHHHHH----HT-CCCCC
T ss_pred CCCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcc----cchHHHHHHHhc----CC-CCCCC
Confidence 9888999999999999999 7889999999999999999999987544311 222222222211 11 13578
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhh-hhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEe
Q 016921 299 TADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT-WKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCR 377 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ar 377 (380)
.+++.++|+++||+++++..+..+.............. ...+... ...............+..+...+...|+++++|
T Consensus 186 ~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~w~~~~~~ 264 (266)
T 3ujc_A 186 VEEYADILTACNFKNVVSKDLSDYWNQLLEVEHKYLHENKEEFLKL-FSEKKFISLDDGWSRKIKDSKRKMQRWGYFKAT 264 (266)
T ss_dssp HHHHHHHHHHTTCEEEEEEECHHHHHHHHHHHHHHHHHTHHHHHHH-SCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEE
T ss_pred HHHHHHHHHHcCCeEEEEEeCCHHHHHHHHHHHHHHHhCHHHHHHh-cCHHHHHHHHHHHHHHHHHHHcCcccceEEEEe
Confidence 99999999999999999988776544322222211111 1111111 011111111222334455667889999999999
Q ss_pred cC
Q 016921 378 KP 379 (380)
Q Consensus 378 KP 379 (380)
||
T Consensus 265 Kp 266 (266)
T 3ujc_A 265 KN 266 (266)
T ss_dssp CC
T ss_pred CC
Confidence 98
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.5e-26 Score=210.46 Aligned_cols=209 Identities=23% Similarity=0.382 Sum_probs=161.0
Q ss_pred HHHHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 139 VRMIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 139 ~~~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
....+.++..+. +. ++.+|||||||+|.++..+++..+.+|+|+|+++.+++.|++++...++..++.++++|+
T Consensus 102 ~~~~~~l~~~l~~~~-----~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 176 (312)
T 3vc1_A 102 SAQAEFLMDHLGQAG-----PDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNM 176 (312)
T ss_dssp HHHHHHHHTTSCCCC-----TTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCT
T ss_pred HHHHHHHHHHhccCC-----CCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECCh
Confidence 333444555554 33 489999999999999999999778899999999999999999999998888999999999
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.++++++++||+|++..+++|+ ++..+++++.++|||||++++.++....... ....+.. .+... ..+.++
T Consensus 177 ~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~---~~~~~~~-~~~~~----~~~~~~ 247 (312)
T 3vc1_A 177 LDTPFDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTITGCWNPRYG---QPSKWVS-QINAH----FECNIH 247 (312)
T ss_dssp TSCCCCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEECTTTC---SCCHHHH-HHHHH----HTCCCC
T ss_pred hcCCCCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEEcccccccc---chhHHHH-HHHhh----hcCCCC
Confidence 9999888999999999999999 6999999999999999999999876544321 1122211 12111 123467
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCcCCchHHHHHhhhhhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEe
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCR 377 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~ar 377 (380)
+.+++.++|+++||++++++.+.....++|....... ........+..++.++...|++|+|+
T Consensus 248 s~~~~~~~l~~aGf~~~~~~~~~~~~~~~w~~~~~~~-----------------~~~g~~~~~~~~~~~~~~~y~~i~a~ 310 (312)
T 3vc1_A 248 SRREYLRAMADNRLVPHTIVDLTPDTLPYWELRATSS-----------------LVTGIEKAFIESYRDGSFQYVLIAAD 310 (312)
T ss_dssp BHHHHHHHHHTTTEEEEEEEECHHHHHHHHHHHTTST-----------------TCCSCHHHHHHHHHHTSEEEEEEEEE
T ss_pred CHHHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHHHHh-----------------hhhcChHHHHHHHHhcCCcEEEEEEe
Confidence 8999999999999999999988754434443332211 11122345667888999999999999
Q ss_pred c
Q 016921 378 K 378 (380)
Q Consensus 378 K 378 (380)
|
T Consensus 311 k 311 (312)
T 3vc1_A 311 R 311 (312)
T ss_dssp E
T ss_pred e
Confidence 8
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=192.53 Aligned_cols=155 Identities=19% Similarity=0.267 Sum_probs=129.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.+++++...++++++.++++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 125 (257)
T 3f4k_A 46 DDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELDLIWSEGAIY 125 (257)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEEEEEEESCSC
T ss_pred CCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEEEEEecChHh
Confidence 47899999999999999999986669999999999999999999999988889999999999998889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|+ ++..+++++.++|||||++++.+......... ......+.. . .+.+.+.+++.++|+++||++++..
T Consensus 126 ~~-~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-----~~~~~~~~~---~--~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 126 NI-GFERGMNEWSKYLKKGGFIAVSEASWFTSERP-----AEIEDFWMD---A--YPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp CC-CHHHHHHHHHTTEEEEEEEEEEEEEESSSCCC-----HHHHHHHHH---H--CTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred hc-CHHHHHHHHHHHcCCCcEEEEEEeeccCCCCh-----HHHHHHHHH---h--CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 99 89999999999999999999998653322111 111111111 1 1335789999999999999999988
Q ss_pred ecCCCc
Q 016921 318 DWSQNV 323 (380)
Q Consensus 318 ~~~~~~ 323 (380)
.+....
T Consensus 195 ~~~~~~ 200 (257)
T 3f4k_A 195 ILPENC 200 (257)
T ss_dssp ECCGGG
T ss_pred ECChhh
Confidence 776543
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-24 Score=193.83 Aligned_cols=165 Identities=17% Similarity=0.187 Sum_probs=133.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.+..++..+.+.+ +.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++..++.++++|+.++
T Consensus 24 ~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~ 98 (256)
T 1nkv_A 24 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98 (256)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhC
Confidence 4566666666554 88999999999999999999878899999999999999999999888877999999999998
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++ +++||+|++..+++|++++..+++++.++|||||++++.+........ .. .+...........+++.+
T Consensus 99 ~~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~ 168 (256)
T 1nkv_A 99 VA-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPA-----TE----EIAQACGVSSTSDFLTLP 168 (256)
T ss_dssp CC-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCS-----SH----HHHHTTTCSCGGGSCCHH
T ss_pred Cc-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCeEEEEecCcccCCCC-----hH----HHHHHHhcccccccCCHH
Confidence 87 789999999999999999999999999999999999998864432211 11 111111112222467899
Q ss_pred HHHHHHHhCCCcEEEEEecC
Q 016921 301 DYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~ 320 (380)
++.++|+++||+++++....
T Consensus 169 ~~~~~l~~aGf~~~~~~~~~ 188 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVLAD 188 (256)
T ss_dssp HHHHHHHTTTBCCCEEEECC
T ss_pred HHHHHHHHCCCeeEEEEeCC
Confidence 99999999999998876443
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-23 Score=189.14 Aligned_cols=154 Identities=19% Similarity=0.261 Sum_probs=128.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...+++++++++++|+.++++++++||+|++..+++
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~~~~~~~ 125 (267)
T 3kkz_A 46 EKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDLIWSEGAIY 125 (267)
T ss_dssp TTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEESSCGG
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEEEEEcCCce
Confidence 48999999999999999999975569999999999999999999999988889999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|+ ++..+++++.++|||||++++.+......... ......+. .. .+.+.+.+++.++|+++||+++++.
T Consensus 126 ~~-~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~-----~~~~~~~~---~~--~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (267)
T 3kkz_A 126 NI-GFERGLNEWRKYLKKGGYLAVSECSWFTDERP-----AEINDFWM---DA--YPEIDTIPNQVAKIHKAGYLPVATF 194 (267)
T ss_dssp GT-CHHHHHHHHGGGEEEEEEEEEEEEEESSSCCC-----HHHHHHHH---HH--CTTCEEHHHHHHHHHHTTEEEEEEE
T ss_pred ec-CHHHHHHHHHHHcCCCCEEEEEEeeecCCCCh-----HHHHHHHH---Hh--CCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 99 89999999999999999999998653322111 11111111 11 1345689999999999999999998
Q ss_pred ecCCC
Q 016921 318 DWSQN 322 (380)
Q Consensus 318 ~~~~~ 322 (380)
.+...
T Consensus 195 ~~~~~ 199 (267)
T 3kkz_A 195 ILPEN 199 (267)
T ss_dssp ECCGG
T ss_pred ECCHh
Confidence 87654
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-23 Score=188.42 Aligned_cols=168 Identities=23% Similarity=0.330 Sum_probs=132.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
+..++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+++ ++.++++|+++++
T Consensus 26 ~~~l~~~l~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~-~v~~~~~d~~~l~ 98 (260)
T 1vl5_A 26 LAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGHQ-QVEYVQGDAEQMP 98 (260)
T ss_dssp HHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCC-CCC
T ss_pred HHHHHHHhCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecHHhCC
Confidence 445555555544 889999999999999999987 569999999999999999999887764 7999999999999
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++|+..+++++.++|||||++++.++..... .....+ ...+....... ....++.++
T Consensus 99 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~----~~~~~~-~~~~~~~~~~~-~~~~~~~~~ 172 (260)
T 1vl5_A 99 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDVF-YNYVEKERDYS-HHRAWKKSD 172 (260)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHHH-HHHHHHHHCTT-CCCCCBHHH
T ss_pred CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCC----HHHHHH-HHHHHHhcCcc-ccCCCCHHH
Confidence 988999999999999999999999999999999999999987643221 111111 11122222211 223578999
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+.++|+++||+++.+..+...
T Consensus 173 ~~~~l~~aGf~~~~~~~~~~~ 193 (260)
T 1vl5_A 173 WLKMLEEAGFELEELHCFHKT 193 (260)
T ss_dssp HHHHHHHHTCEEEEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEEeecc
Confidence 999999999999988776543
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=192.45 Aligned_cols=176 Identities=16% Similarity=0.138 Sum_probs=132.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+.+..++..+.. ++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...+++.++.++++|+.
T Consensus 55 ~~~l~~~l~~~~~------~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 127 (285)
T 4htf_A 55 WQDLDRVLAEMGP------QKLRVLDAGGGEGQTAIKMAER-GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQ 127 (285)
T ss_dssp HHHHHHHHHHTCS------SCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGG
T ss_pred HHHHHHHHHhcCC------CCCEEEEeCCcchHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHH
Confidence 3445566666542 2689999999999999999987 88999999999999999999988888778999999999
Q ss_pred CCC-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh----hccCC
Q 016921 219 QQP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC----DAYYL 293 (380)
Q Consensus 219 ~~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 293 (380)
+++ +++++||+|++..+++|++++..+++++.++|||||.+++.++.............. ......... .....
T Consensus 128 ~~~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 206 (285)
T 4htf_A 128 DVASHLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAGN-FDYVQAGMPKKKKRTLSP 206 (285)
T ss_dssp GTGGGCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTTC-HHHHHTTCCCC----CCC
T ss_pred HhhhhcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhcC-HHHHhhhccccccccCCC
Confidence 987 678999999999999999999999999999999999999988542110000000000 000000000 01111
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 294 PAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 294 ~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
..+++++++.++|+++||+++++..+...
T Consensus 207 ~~~~~~~~l~~~l~~aGf~v~~~~~~~~~ 235 (285)
T 4htf_A 207 DYPRDPTQVYLWLEEAGWQIMGKTGVRVF 235 (285)
T ss_dssp SCCBCHHHHHHHHHHTTCEEEEEEEESSS
T ss_pred CCCCCHHHHHHHHHHCCCceeeeeeEEEe
Confidence 24578999999999999999998877543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-23 Score=187.36 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=118.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++ .+...++.++++|+.++++++++||+|++..+++
T Consensus 39 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~--~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 115 (263)
T 2yqz_A 39 EEPVFLELGVGTGRIALPLIAR-GYRYIALDADAAMLEVFRQKI--AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH 115 (263)
T ss_dssp SCCEEEEETCTTSTTHHHHHTT-TCEEEEEESCHHHHHHHHHHT--TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEeCCcCCHHHHHHHHC-CCEEEEEECCHHHHHHHHHHh--hccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence 4889999999999999999987 789999999999999999887 2334689999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-----CCCCHHHHHHHHHhCCCc
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-----AWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~ll~~aGf~ 312 (380)
|++++..+++++.++|||||.+++. +..... .....+ ...+.......+.+ .+++.+++.++|+++||+
T Consensus 116 ~~~~~~~~l~~~~~~L~pgG~l~~~-~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~ 189 (263)
T 2yqz_A 116 LVPDWPKVLAEAIRVLKPGGALLEG-WDQAEA----SPEWTL-QERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLK 189 (263)
T ss_dssp GCTTHHHHHHHHHHHEEEEEEEEEE-EEEECC----CHHHHH-HHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHCCCCcEEEEE-ecCCCc----cHHHHH-HHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCC
Confidence 9999999999999999999999987 322110 110001 11222222221111 245788999999999999
Q ss_pred EEEEEec
Q 016921 313 DIKAEDW 319 (380)
Q Consensus 313 ~v~~~~~ 319 (380)
++.+...
T Consensus 190 ~~~~~~~ 196 (263)
T 2yqz_A 190 PRTREVA 196 (263)
T ss_dssp CEEEEEE
T ss_pred cceEEEe
Confidence 8776443
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-22 Score=184.52 Aligned_cols=164 Identities=24% Similarity=0.341 Sum_probs=128.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+++ ++.++.+|+.++++++++||+|++..++
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~~~~l 115 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIK-NVKFLQANIFSLPFEDSSFDHIFVCFVL 115 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CcEEEEcccccCCCCCCCeeEEEEechh
Confidence 48999999999999999999987 689999999999999999999888774 7999999999998888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCC--CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLA--PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|++++..+++++.++|||||.+++.+....... +.......+...... ...... ....+..++..+|+++||+++
T Consensus 116 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~l~~~l~~aGf~~v 193 (276)
T 3mgg_A 116 EHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEGKKAIEAWNCLIR-VQAYMK-GNSLVGRQIYPLLQESGFEKI 193 (276)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCCHHHHHHHHHHHH-HHHHTT-CCTTGGGGHHHHHHHTTCEEE
T ss_pred hhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCcHHHHHHHHHHHH-HHHhcC-CCcchHHHHHHHHHHCCCCeE
Confidence 9999999999999999999999999885432221 111111111111111 111111 123567899999999999999
Q ss_pred EEEecCCCcC
Q 016921 315 KAEDWSQNVA 324 (380)
Q Consensus 315 ~~~~~~~~~~ 324 (380)
+++....+..
T Consensus 194 ~~~~~~~~~~ 203 (276)
T 3mgg_A 194 RVEPRMVYID 203 (276)
T ss_dssp EEEEEEEEEC
T ss_pred EEeeEEEECC
Confidence 9987655444
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=9.6e-23 Score=184.84 Aligned_cols=153 Identities=14% Similarity=0.162 Sum_probs=119.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|++++...+...+++|+++|+.++++ ++||+|++..
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~--~~~d~v~~~~ 147 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI--ENASMVVLNF 147 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC--CSEEEEEEES
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc--cccccceeee
Confidence 48999999999999999999875 579999999999999999999888887899999999999875 4699999999
Q ss_pred ccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--c-------------CCCCCC
Q 016921 235 SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--Y-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------------~~~~~~ 297 (380)
+++|+++ ...++++++++|||||.|++.+...... .............+... + ......
T Consensus 148 ~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~----~~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 148 TLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFED----AKVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp CGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSS----HHHHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCC----HHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 9999964 4579999999999999999998654322 11111111111111000 0 001236
Q ss_pred CHHHHHHHHHhCCCcEEEE
Q 016921 298 STADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~ 316 (380)
+.+++.++|+++||+.|++
T Consensus 224 s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcCCCeEEE
Confidence 8899999999999998875
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=182.61 Aligned_cols=154 Identities=17% Similarity=0.221 Sum_probs=119.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++ .+.+|+|+|+|+.|++.++++. +++.+.++|+.++++ +++||+|++..+++
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~l~ 128 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQ-SGAEVLGTDNAATMIEKARQNY------PHLHFDVADARNFRV-DKPLDAVFSNAMLH 128 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHH-TTCEEEEEESCHHHHHHHHHHC------TTSCEEECCTTTCCC-SSCEEEEEEESCGG
T ss_pred CCCEEEEecCCCCHHHHHHHh-CCCeEEEEECCHHHHHHHHhhC------CCCEEEECChhhCCc-CCCcCEEEEcchhh
Confidence 388999999999999999998 4889999999999999998764 478999999999886 58999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh----ccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD----AYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
|++++..+++++.++|||||++++..+..... ..+.......+..... ......+.+.+++.++|+++||++
T Consensus 129 ~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~ 204 (279)
T 3ccf_A 129 WVKEPEAAIASIHQALKSGGRFVAEFGGKGNI----KYILEALYNALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDV 204 (279)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECTTTT----HHHHHHHHHHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEE
T ss_pred hCcCHHHHHHHHHHhcCCCcEEEEEecCCcch----HHHHHHHHHHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEE
Confidence 99999999999999999999999987543221 0111111111111110 001113568999999999999999
Q ss_pred EEEEecCCCc
Q 016921 314 IKAEDWSQNV 323 (380)
Q Consensus 314 v~~~~~~~~~ 323 (380)
+.++.+....
T Consensus 205 ~~~~~~~~~~ 214 (279)
T 3ccf_A 205 TYAALFNRPT 214 (279)
T ss_dssp EEEEEEECCE
T ss_pred EEEEEecccc
Confidence 9887665443
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=177.16 Aligned_cols=157 Identities=20% Similarity=0.199 Sum_probs=119.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
....++..+... ++.+|||||||+|.++..+++.+ +.+|+|+|+|+.|++.++++. +++.++++|+.+
T Consensus 21 ~~~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~ 89 (259)
T 2p35_A 21 PARDLLAQVPLE-----RVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL------PNTNFGKADLAT 89 (259)
T ss_dssp HHHHHHTTCCCS-----CCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS------TTSEEEECCTTT
T ss_pred HHHHHHHhcCCC-----CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------CCcEEEECChhh
Confidence 344556655543 37899999999999999999986 789999999999999998862 579999999999
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH--Hhhc-----cC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--ICDA-----YY 292 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~ 292 (380)
++ ++++||+|++..+++|++++..+++++.++|||||++++.++.... ............. +... ..
T Consensus 90 ~~-~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (259)
T 2p35_A 90 WK-PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAVQMPDNLQ-----EPTHIAMHETADGGPWKDAFSGGGLR 163 (259)
T ss_dssp CC-CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEEEEECCTT-----SHHHHHHHHHHHHSTTGGGC------
T ss_pred cC-ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEEEeCCCCC-----cHHHHHHHHHhcCcchHHHhcccccc
Confidence 88 7889999999999999999999999999999999999998853211 1111111111111 0000 01
Q ss_pred CCCCCCHHHHHHHHHhCCCcEE
Q 016921 293 LPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGf~~v 314 (380)
...+++.+++.++|+++||++.
T Consensus 164 ~~~~~~~~~~~~~l~~aGf~v~ 185 (259)
T 2p35_A 164 RKPLPPPSDYFNALSPKSSRVD 185 (259)
T ss_dssp -CCCCCHHHHHHHHGGGEEEEE
T ss_pred ccCCCCHHHHHHHHHhcCCceE
Confidence 2246789999999999999743
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.9e-23 Score=182.09 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=121.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+ ++.++++|+.+++++ ++||+|++..++
T Consensus 44 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~---~~~~~~~d~~~~~~~-~~fD~v~~~~~l 119 (234)
T 3dtn_A 44 ENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL---KVKYIEADYSKYDFE-EKYDMVVSALSI 119 (234)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT---TEEEEESCTTTCCCC-SCEEEEEEESCG
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC---CEEEEeCchhccCCC-CCceEEEEeCcc
Confidence 57899999999999999999987 7899999999999999998875433 799999999998876 899999999999
Q ss_pred CCCCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH--------------HhhccCCCCCCCHH
Q 016921 237 EHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK--------------ICDAYYLPAWCSTA 300 (380)
Q Consensus 237 ~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~ 300 (380)
+|+++.. .++++++++|||||.+++.++....... ........+.. ..........++.+
T Consensus 120 ~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (234)
T 3dtn_A 120 HHLEDEDKKELYKRSYSILKESGIFINADLVHGETAF----IENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMN 195 (234)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEECBCSSHH----HHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHH
T ss_pred ccCCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCChh----hhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHH
Confidence 9998765 5999999999999999999875433211 11111111111 11111223457899
Q ss_pred HHHHHHHhCCCcEEEEEecCCC
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
++.++|+++||+++++......
T Consensus 196 ~~~~ll~~aGF~~v~~~~~~~~ 217 (234)
T 3dtn_A 196 QQLNWLKEAGFRDVSCIYKYYQ 217 (234)
T ss_dssp HHHHHHHHTTCEEEEEEEEETT
T ss_pred HHHHHHHHcCCCceeeeeeecc
Confidence 9999999999999987654433
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.88 E-value=5e-22 Score=180.41 Aligned_cols=162 Identities=22% Similarity=0.217 Sum_probs=124.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+.+.++..+...+ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.++++. ++.|+++|++++
T Consensus 22 ~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~d~~~~ 88 (261)
T 3ege_A 22 IVNAIINLLNLPK-----GSVIADIGAGTGGYSVALANQ-GLFVYAVEPSIVMRQQAVVHP-------QVEWFTGYAENL 88 (261)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEETCTTSHHHHHHHTT-TCEEEEECSCHHHHHSSCCCT-------TEEEECCCTTSC
T ss_pred HHHHHHHHhCCCC-----CCEEEEEcCcccHHHHHHHhC-CCEEEEEeCCHHHHHHHHhcc-------CCEEEECchhhC
Confidence 4455556555443 899999999999999999985 889999999999998775432 799999999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++++++||+|++..+++|++++..++++++++|| ||++++.++.......... ............ ..+.+.+
T Consensus 89 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-----~~~~~~~ 160 (261)
T 3ege_A 89 ALPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTIVLLTFDIRLAQRIWL--YDYFPFLWEDAL-----RFLPLDE 160 (261)
T ss_dssp CSCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCEEEEEECGGGCCCCGG--GGTCHHHHHHHH-----TSCCHHH
T ss_pred CCCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEEEEEEcCCchhHHHHH--HHHHHHHhhhhh-----hhCCCHH
Confidence 9888999999999999999999999999999999 9999998875433221110 011111111111 1245788
Q ss_pred HHHHHHHhCCCcEEEEEecCCCcC
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQNVA 324 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~~~ 324 (380)
++. +|+++||++++++.+..++.
T Consensus 161 ~~~-~l~~aGF~~v~~~~~~~p~~ 183 (261)
T 3ege_A 161 QIN-LLQENTKRRVEAIPFLLPHD 183 (261)
T ss_dssp HHH-HHHHHHCSEEEEEECCEETT
T ss_pred HHH-HHHHcCCCceeEEEecCCCc
Confidence 899 99999999999988765443
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-21 Score=173.81 Aligned_cols=168 Identities=23% Similarity=0.385 Sum_probs=133.5
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
...++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...+++ ++.++++|+++++
T Consensus 10 ~~~~~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~ 82 (239)
T 1xxl_A 10 LGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVE-NVRFQQGTAESLP 82 (239)
T ss_dssp HHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTCC-SEEEEECBTTBCC
T ss_pred cchHHHHhCcCC-----CCEEEEEccCcCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEecccccCC
Confidence 344556666554 899999999999999999987 679999999999999999999887764 7999999999999
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++++..+++++.++|||||++++.+...... .....+. ..+.......+ ...++.++
T Consensus 83 ~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~-~~~~~~~~ 156 (239)
T 1xxl_A 83 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFV-NHLNRLRDPSH-VRESSLSE 156 (239)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHH-HHHHHHHCTTC-CCCCBHHH
T ss_pred CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCC----hhHHHHH-HHHHHhccccc-cCCCCHHH
Confidence 888999999999999999999999999999999999999988654321 1111111 11222222222 23578999
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+.++|+++||+++.+..+...
T Consensus 157 ~~~ll~~aGf~~~~~~~~~~~ 177 (239)
T 1xxl_A 157 WQAMFSANQLAYQDIQKWNLP 177 (239)
T ss_dssp HHHHHHHTTEEEEEEEEEEEE
T ss_pred HHHHHHHCCCcEEEEEeecCc
Confidence 999999999999988877544
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=175.85 Aligned_cols=179 Identities=15% Similarity=0.145 Sum_probs=137.6
Q ss_pred HHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHH
Q 016921 98 GIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177 (380)
Q Consensus 98 ~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~ 177 (380)
.+.++||..+..|...+....... .....++..++... +.+|||||||+|.++..++
T Consensus 4 ~~~~~y~~~a~~y~~~~~~~~~~~--------------~~~~~~l~~~~~~~---------~~~vLDiGcG~G~~~~~l~ 60 (203)
T 3h2b_A 4 DVSKAYSSPTFDAEALLGTVISAE--------------DPDRVLIEPWATGV---------DGVILDVGSGTGRWTGHLA 60 (203)
T ss_dssp HHHHHHHCTTTCHHHHTCSSCCTT--------------CTTHHHHHHHHHHC---------CSCEEEETCTTCHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHhhhhcccc--------------HHHHHHHHHHhccC---------CCeEEEecCCCCHHHHHHH
Confidence 377888888888876654321110 01122344444332 6789999999999999999
Q ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCC
Q 016921 178 KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAP 255 (380)
Q Consensus 178 ~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~Lkp 255 (380)
+. +.+|+|+|+|+.+++.++++. .++.++++|+.++++++++||+|++..+++|++ ++..+++++.++|||
T Consensus 61 ~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~p 133 (203)
T 3h2b_A 61 SL-GHQIEGLEPATRLVELARQTH------PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVED 133 (203)
T ss_dssp HT-TCCEEEECCCHHHHHHHHHHC------TTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEE
T ss_pred hc-CCeEEEEeCCHHHHHHHHHhC------CCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCC
Confidence 87 889999999999999998863 479999999999888889999999999999996 889999999999999
Q ss_pred CcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 256 AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 256 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
||.+++.++......... .......+++.+++.++|+++||+++++..+..
T Consensus 134 gG~l~i~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~ 184 (203)
T 3h2b_A 134 GGGLLMSFFSGPSLEPMY---------------HPVATAYRWPLPELAQALETAGFQVTSSHWDPR 184 (203)
T ss_dssp EEEEEEEEECCSSCEEEC---------------CSSSCEEECCHHHHHHHHHHTTEEEEEEEECTT
T ss_pred CcEEEEEEccCCchhhhh---------------chhhhhccCCHHHHHHHHHHCCCcEEEEEecCC
Confidence 999999986543311100 011111246899999999999999999987765
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.88 E-value=8.4e-23 Score=180.43 Aligned_cols=150 Identities=16% Similarity=0.182 Sum_probs=115.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. .++.++++|+.+++++ ++||+|++..+++|
T Consensus 46 ~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~-----~~~~~~~~d~~~~~~~-~~fD~v~~~~~l~~ 118 (220)
T 3hnr_A 46 FGNVLEFGVGTGNLTNKLLLA-GRTVYGIEPSREMRMIAKEKLP-----KEFSITEGDFLSFEVP-TSIDTIVSTYAFHH 118 (220)
T ss_dssp CSEEEEECCTTSHHHHHHHHT-TCEEEEECSCHHHHHHHHHHSC-----TTCCEESCCSSSCCCC-SCCSEEEEESCGGG
T ss_pred CCeEEEeCCCCCHHHHHHHhC-CCeEEEEeCCHHHHHHHHHhCC-----CceEEEeCChhhcCCC-CCeEEEEECcchhc
Confidence 789999999999999999987 8899999999999999988753 4799999999999877 99999999999999
Q ss_pred CCCHHH--HHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH----HhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 239 MPDKSK--FVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK----ICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 239 ~~~~~~--~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
+++... +++++.++|||||.+++.++..... ............. .........+++.+++.++|+++||+
T Consensus 119 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 194 (220)
T 3hnr_A 119 LTDDEKNVAIAKYSQLLNKGGKIVFADTIFADQ----DAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFH 194 (220)
T ss_dssp SCHHHHHHHHHHHHHHSCTTCEEEEEEECBSSH----HHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEE
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEeccccCh----HHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCE
Confidence 998876 9999999999999999998543221 1111100000000 00000111245899999999999998
Q ss_pred EEEEEec
Q 016921 313 DIKAEDW 319 (380)
Q Consensus 313 ~v~~~~~ 319 (380)
++.....
T Consensus 195 v~~~~~~ 201 (220)
T 3hnr_A 195 VTFTRLN 201 (220)
T ss_dssp EEEEECS
T ss_pred EEEeecc
Confidence 8876543
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-22 Score=174.62 Aligned_cols=169 Identities=18% Similarity=0.162 Sum_probs=130.8
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+.+.++..+...+ + +|||||||+|.++..+++..+.+|+|+|+|+.+++.|++++...++.+++.++++|+.+
T Consensus 31 ~~~~~~~~~~~~~~-----~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 104 (219)
T 3dlc_A 31 IIAENIINRFGITA-----G-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHN 104 (219)
T ss_dssp HHHHHHHHHHCCCE-----E-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTB
T ss_pred HHHHHHHHhcCCCC-----C-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHH
Confidence 35566666665443 4 99999999999999999875679999999999999999999998887899999999999
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc-----CCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY-----YLP 294 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~ 294 (380)
+++++++||+|++..+++|++++..+++++.++|||||.+++.+..... .........+......+ ...
T Consensus 105 ~~~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (219)
T 3dlc_A 105 IPIEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGKTYIGGGFGNK------ELRDSISAEMIRKNPDWKEFNRKNI 178 (219)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEECCSSH------HHHHHHHHHHHHHCTTHHHHHHHHS
T ss_pred CCCCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCEEEEEeccCcH------HHHHHHHHHHHHhHHHHHhhhhhcc
Confidence 9988899999999999999999999999999999999999998743211 11111111111110000 001
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
..++.+++.++|+++||+++++....
T Consensus 179 ~~~~~~~~~~~l~~aGf~~v~~~~~~ 204 (219)
T 3dlc_A 179 SQENVERFQNVLDEIGISSYEIILGD 204 (219)
T ss_dssp SHHHHHHHHHHHHHHTCSSEEEEEET
T ss_pred ccCCHHHHHHHHHHcCCCeEEEEecC
Confidence 23578999999999999998876443
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=175.54 Aligned_cols=147 Identities=11% Similarity=0.016 Sum_probs=116.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++... ++.++++|+.++ .++++||+|++.++++|
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~-----~v~~~~~d~~~~-~~~~~fD~v~~~~~l~~ 115 (250)
T 2p7i_A 43 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLKD-----GITYIHSRFEDA-QLPRRYDNIVLTHVLEH 115 (250)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSCS-----CEEEEESCGGGC-CCSSCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhhhC-----CeEEEEccHHHc-CcCCcccEEEEhhHHHh
Confidence 678999999999999999986 67999999999999999987532 799999999887 46789999999999999
Q ss_pred CCCHHHHHHHHH-HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH----------HhhccCCCCCCCHHHHHHHHH
Q 016921 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK----------ICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 239 ~~~~~~~l~~~~-r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~ll~ 307 (380)
++++..+++++. ++|||||++++.++..... .... ..... .........+++.+++.++|+
T Consensus 116 ~~~~~~~l~~~~~~~LkpgG~l~i~~~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (250)
T 2p7i_A 116 IDDPVALLKRINDDWLAEGGRLFLVCPNANAV-------SRQI-AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDAS 187 (250)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTCH-------HHHH-HHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHhcCCCCEEEEEcCChHHH-------HHHH-HHHcCccccchhcccccccccccccCCHHHHHHHHH
Confidence 999999999999 9999999999988543211 0000 00000 000111224579999999999
Q ss_pred hCCCcEEEEEecC
Q 016921 308 SLSLEDIKAEDWS 320 (380)
Q Consensus 308 ~aGf~~v~~~~~~ 320 (380)
++||++++...+.
T Consensus 188 ~~Gf~~~~~~~~~ 200 (250)
T 2p7i_A 188 RAGLQVTYRSGIF 200 (250)
T ss_dssp HTTCEEEEEEEEE
T ss_pred HCCCeEEEEeeeE
Confidence 9999999887543
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.2e-21 Score=170.08 Aligned_cols=156 Identities=22% Similarity=0.286 Sum_probs=131.1
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
..++..+.+.+ +.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+++ ++.++++|+.++
T Consensus 27 ~~~~~~~~~~~-----~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~ 100 (219)
T 3dh0_A 27 EKVLKEFGLKE-----GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLK-NVEVLKSEENKI 100 (219)
T ss_dssp HHHHHHHTCCT-----TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEECBTTBC
T ss_pred HHHHHHhCCCC-----CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEecccccC
Confidence 44555555544 8899999999999999999985 479999999999999999999888775 799999999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++++++||+|++..+++|++++..+++++.++|||||.+++.++......... .....++.+
T Consensus 101 ~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~------------------~~~~~~~~~ 162 (219)
T 3dh0_A 101 PLPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDKGP------------------PPEEVYSEW 162 (219)
T ss_dssp SSCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSC------------------CGGGSCCHH
T ss_pred CCCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEecccccccCC------------------chhcccCHH
Confidence 88889999999999999999999999999999999999999987644321110 011246899
Q ss_pred HHHHHHHhCCCcEEEEEecCCC
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
++.++++++||++++...+...
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~ 184 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKY 184 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTT
T ss_pred HHHHHHHHCCCEEEEEEeeCCc
Confidence 9999999999999998776643
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-20 Score=173.74 Aligned_cols=205 Identities=17% Similarity=0.153 Sum_probs=144.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+ .+++++++|+.++++ +++||+|++..+
T Consensus 22 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~--~~v~~~~~d~~~~~~-~~~fD~v~~~~~ 98 (284)
T 3gu3_A 22 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLP--YDSEFLEGDATEIEL-NDKYDIAICHAF 98 (284)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSS--SEEEEEESCTTTCCC-SSCEEEEEEESC
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEEcchhhcCc-CCCeeEEEECCh
Confidence 48999999999999999999876 4799999999999999999987655 389999999999887 479999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccC-----CCCCC-----CccccchHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCH-----RDLAP-----SEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (380)
++|++++..++++++++|||||++++.+... ..... .......+ ...+.......+ ..+.+..++.++
T Consensus 99 l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~l~~~ 176 (284)
T 3gu3_A 99 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVL-QKLFESDTQRNG-KDGNIGMKIPIY 176 (284)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHHSEEETTSCHHHHCCHHHH-HHHHHHHHHHTC-CCTTGGGTHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCCCCEEEEEecchhcccccceecCcchhhccchHHH-HHHHHHHhhhhc-ccccHHHHHHHH
Confidence 9999999999999999999999999988641 10000 00011111 122222222222 234567889999
Q ss_pred HHhCCCcEEEEEecC----CCcCCchHHH-------HHhh-----hhhhhh-HHHHhhchhhhhhhhhHHHHHHHHhcC
Q 016921 306 LQSLSLEDIKAEDWS----QNVAPFWPAV-------IHSA-----LTWKGF-TSLLRTGLKTIKGALAMPLMIEGYQKN 367 (380)
Q Consensus 306 l~~aGf~~v~~~~~~----~~~~~~~~~~-------~~~~-----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (380)
|+++||++|++.... .+...|..+. .... ....++ ..+...+|...+....+...++.+++.
T Consensus 177 l~~aGF~~v~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~G~~~~~~~~~~~~~~l~~~g~~~~e~~~~~~~~~~~~~~~ 255 (284)
T 3gu3_A 177 LSELGVKNIECRVSDKVNFLDSNMHHNDKNDLYQSLKEEGIAGDPGDKQQFVERLIARGLTYDNALAQYEAELRFFKAL 255 (284)
T ss_dssp HHHTTCEEEEEEECCCCEEECTTCCSHHHHHHHHHHHHTTTTCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHcCCCeEEEEEcCCccccCCCCChHHHHHHHHHHHhccccCCcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHh
Confidence 999999999884333 2223332222 1100 011222 334446787777777788877777654
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.6e-21 Score=172.36 Aligned_cols=149 Identities=21% Similarity=0.303 Sum_probs=121.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ...++.++++|+.++++++++||+|++..+++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 127 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT-GYKAVGVDISEVMIQKGKERG----EGPDLSFIKGDLSSLPFENEQFEAIMAINSLE 127 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHTTT----CBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhc----ccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence 3789999999999999999997 889999999999999998764 23579999999999998889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|++++..+++++.++|+|||.+++.++....... .. .+............++++++.++++++||++++..
T Consensus 128 ~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 198 (242)
T 3l8d_A 128 WTEEPLRALNEIKRVLKSDGYACIAILGPTAKPR-EN--------SYPRLYGKDVVCNTMMPWEFEQLVKEQGFKVVDGI 198 (242)
T ss_dssp SSSCHHHHHHHHHHHEEEEEEEEEEEECTTCGGG-GG--------GGGGGGTCCCSSCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hccCHHHHHHHHHHHhCCCeEEEEEEcCCcchhh-hh--------hhhhhccccccccCCCHHHHHHHHHHcCCEEEEee
Confidence 9999999999999999999999999864332110 00 11111122222345789999999999999999987
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
.+.
T Consensus 199 ~~~ 201 (242)
T 3l8d_A 199 GVY 201 (242)
T ss_dssp EEE
T ss_pred ccc
Confidence 553
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-21 Score=173.60 Aligned_cols=199 Identities=13% Similarity=0.165 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcCh
Q 016921 92 ARELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGG 171 (380)
Q Consensus 92 ~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~ 171 (380)
....++.+.++||.....|+..++..-... .........++..++..+. ...++.+|||||||+|.
T Consensus 27 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~l~~~~~----~~~~~~~vLDiGcG~G~ 92 (241)
T 2ex4_A 27 EKQFYSKAKTYWKQIPPTVDGMLGGYGHIS----------SIDINSSRKFLQRFLREGP----NKTGTSCALDCGAGIGR 92 (241)
T ss_dssp HHHHHHHHHHHHHTSCSSHHHHTTTCGGGH----------HHHHHHHHHHHHGGGC--------CCCCSEEEEETCTTTH
T ss_pred cchhHHHHHHHHhcCCccccccccCCCCcc----------hhhHHhHHHHHHHHHHhcc----cCCCCCEEEEECCCCCH
Confidence 456777788899888777766554311000 0011222333333333221 11247899999999999
Q ss_pred HHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHH--HHHHHH
Q 016921 172 SSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSEL 249 (380)
Q Consensus 172 ~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~ 249 (380)
++..+++....+|+|+|+|+.+++.|++++...+ ..++.++++|+.++++++++||+|++..+++|+++.. .+++++
T Consensus 93 ~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~ 171 (241)
T 2ex4_A 93 ITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEG-KRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRC 171 (241)
T ss_dssp HHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGG-GGEEEEEECCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcC-CceEEEEEcChhhcCCCCCCEEEEEEcchhhhCCHHHHHHHHHHH
Confidence 9999988756699999999999999999886553 2468999999999888778999999999999998854 899999
Q ss_pred HHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 250 ARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 250 ~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
.++|||||++++.++.... ...+. ........+.+++.++|+++||++++......
T Consensus 172 ~~~LkpgG~l~i~~~~~~~----~~~~~------------~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~ 227 (241)
T 2ex4_A 172 KGSLRPNGIIVIKDNMAQE----GVILD------------DVDSSVCRDLDVVRRIICSAGLSLLAEERQEN 227 (241)
T ss_dssp HHHEEEEEEEEEEEEEBSS----SEEEE------------TTTTEEEEBHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHhcCCCeEEEEEEccCCC----cceec------------ccCCcccCCHHHHHHHHHHcCCeEEEeeecCC
Confidence 9999999999998865432 00000 00001124789999999999999999876643
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=172.53 Aligned_cols=183 Identities=14% Similarity=0.176 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHH------HHHHHHHHHHHcC
Q 016921 134 HRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPV------QAQRANALAAARG 205 (380)
Q Consensus 134 ~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~------~~~~a~~~~~~~~ 205 (380)
....+.+....++..+.+.+ +.+|||||||+|.++..+++..+ .+|+|+|+|+. +++.|++++...+
T Consensus 24 ~~~~~~~~~~~l~~~~~~~~-----~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~ 98 (275)
T 3bkx_A 24 IQRRQTAHRLAIAEAWQVKP-----GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGP 98 (275)
T ss_dssp HHHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTST
T ss_pred HHHHHHHHHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcC
Confidence 56677778888888887654 89999999999999999999853 89999999997 9999999998887
Q ss_pred CCCCeEEEEcC---CCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH
Q 016921 206 LADKVSFQVGD---ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (380)
Q Consensus 206 ~~~~v~~~~~d---~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (380)
+.+++.++++| ...+++++++||+|++..+++|++++..+++.+.++++|||++++.++......+ .........
T Consensus 99 ~~~~v~~~~~d~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~~~~~--~~~~~~~~~ 176 (275)
T 3bkx_A 99 LGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQPTAL--DQIGHLQAA 176 (275)
T ss_dssp TGGGEEEECSCCTTTCCGGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSSCSSG--GGHHHHHHH
T ss_pred CCCceEEEECChhhhccCCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCCCCch--hhhhHHHHH
Confidence 76789999998 4455677889999999999999999988888888888889999999876543221 111111111
Q ss_pred HHHHHh----h--ccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 283 LLKKIC----D--AYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 283 ~~~~~~----~--~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
...... . ......+++.+++.++|+++||+++++..+....
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~~~~~ 223 (275)
T 3bkx_A 177 MIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIVEDPT 223 (275)
T ss_dssp HHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCBCCTT
T ss_pred HHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEecCCC
Confidence 111111 1 1122246799999999999999999988875443
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=172.33 Aligned_cols=160 Identities=21% Similarity=0.272 Sum_probs=121.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCC------CCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQPFPD------GQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~------~~fD 228 (380)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++... +...++.|+++|++++++++ ++||
T Consensus 36 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 115 (299)
T 3g5t_A 36 ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKID 115 (299)
T ss_dssp CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCEE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCee
Confidence 38999999999999999999754 789999999999999999998876 44578999999999988776 8999
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC--CCHHHHHHHH
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW--CSTADYVKLL 306 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ll 306 (380)
+|++..+++|+ ++..+++++.++|||||.|++.++..+.... ...+......+.... ....+.+ ...+.+.+++
T Consensus 116 ~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~w~~p~~~~~~~~l 191 (299)
T 3g5t_A 116 MITAVECAHWF-DFEKFQRSAYANLRKDGTIAIWGYADPIFPD-YPEFDDLMIEVPYGK--QGLGPYWEQPGRSRLRNML 191 (299)
T ss_dssp EEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEEEEEEECTT-CGGGTTHHHHHHHCT--TTTGGGSCTTHHHHHHTTT
T ss_pred EEeHhhHHHHh-CHHHHHHHHHHhcCCCcEEEEEecCCccccC-cHHHHHHHHHhccCc--ccccchhhchhhHHHHHhh
Confidence 99999999999 9999999999999999999996654322211 112222222222110 0111112 3456778999
Q ss_pred HhCCC-----cEEEEEecCC
Q 016921 307 QSLSL-----EDIKAEDWSQ 321 (380)
Q Consensus 307 ~~aGf-----~~v~~~~~~~ 321 (380)
+++|| ++++...+..
T Consensus 192 ~~~gfp~~~f~~v~~~~~~~ 211 (299)
T 3g5t_A 192 KDSHLDPELFHDIQVSYFCA 211 (299)
T ss_dssp TTCCCCTTTEEEEEEEEECG
T ss_pred hccCCChHHcCcceEEEecc
Confidence 99999 6777666644
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-20 Score=165.52 Aligned_cols=190 Identities=19% Similarity=0.243 Sum_probs=132.8
Q ss_pred HHHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHH
Q 016921 94 ELKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (380)
Q Consensus 94 ~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~ 173 (380)
.+.+.+.++|+..+..|+..+.. .....+..++..+... .++.+|||||||+|.++
T Consensus 6 ~~~~~~~~~~~~~a~~y~~~~~~--------------------~~~~~~~~~~~~l~~~----~~~~~vLdiG~G~G~~~ 61 (218)
T 3ou2_A 6 GLIESQLSYYRARASEYDATFVP--------------------YMDSAAPAALERLRAG----NIRGDVLELASGTGYWT 61 (218)
T ss_dssp HHHHHHHHHHHHHGGGHHHHHHH--------------------HHTTTHHHHHHHHTTT----TSCSEEEEESCTTSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHHhcC----CCCCeEEEECCCCCHHH
Confidence 34455667787777766653322 1111233444444311 23779999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCH--HHHHHHHHH
Q 016921 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELAR 251 (380)
Q Consensus 174 ~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r 251 (380)
..+++. +.+|+|+|+|+.+++.+++ .+. .++.++++|+.++ +++++||+|++..+++|+++. ..+++++.+
T Consensus 62 ~~l~~~-~~~v~~~D~s~~~~~~a~~----~~~-~~~~~~~~d~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~ 134 (218)
T 3ou2_A 62 RHLSGL-ADRVTALDGSAEMIAEAGR----HGL-DNVEFRQQDLFDW-TPDRQWDAVFFAHWLAHVPDDRFEAFWESVRS 134 (218)
T ss_dssp HHHHHH-SSEEEEEESCHHHHHHHGG----GCC-TTEEEEECCTTSC-CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHhc-CCeEEEEeCCHHHHHHHHh----cCC-CCeEEEecccccC-CCCCceeEEEEechhhcCCHHHHHHHHHHHHH
Confidence 999998 8899999999999999987 343 5799999999988 678999999999999999885 899999999
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhcc-------CCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAY-------YLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-------~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
+|||||.+++.++...... ....... ......... ....+++++++.++|+++||+++..+..
T Consensus 135 ~L~pgG~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~ 205 (218)
T 3ou2_A 135 AVAPGGVVEFVDVTDHERR-----LEQQDDSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDEVH 205 (218)
T ss_dssp HEEEEEEEEEEEECCCC-----------------CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred HcCCCeEEEEEeCCCCccc-----cchhhhcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeeecc
Confidence 9999999999987642211 0000000 000000000 0123569999999999999996655443
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.85 E-value=9.4e-21 Score=170.91 Aligned_cols=189 Identities=15% Similarity=0.130 Sum_probs=139.8
Q ss_pred HHHHHHHHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHH
Q 016921 95 LKEGIAEFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSR 174 (380)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~ 174 (380)
.++...++|+.....|+...+... .........+..++..+... ++.+|||||||+|.++.
T Consensus 49 ~~~~~~~~w~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~l~~l~~~-----~~~~vLDiG~G~G~~~~ 109 (254)
T 1xtp_A 49 WYGKALEYWRTVPATVSGVLGGMD--------------HVHDVDIEGSRNFIASLPGH-----GTSRALDCGAGIGRITK 109 (254)
T ss_dssp HHHHHHHHHHTSCSSHHHHTTTCG--------------GGHHHHHHHHHHHHHTSTTC-----CCSEEEEETCTTTHHHH
T ss_pred hhhhhhhHHhcCCccccceecCcC--------------ccCHHHHHHHHHHHHhhccc-----CCCEEEEECCCcCHHHH
Confidence 445566777776555554433211 12334444556666666443 38899999999999999
Q ss_pred HHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHHHh
Q 016921 175 YLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARV 252 (380)
Q Consensus 175 ~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~ 252 (380)
.+++....+|+|+|+|+.+++.+++++... .++.++++|+.++++++++||+|++..+++|++ +...+++++.++
T Consensus 110 ~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~ 186 (254)
T 1xtp_A 110 NLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQA 186 (254)
T ss_dssp HTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGGCCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHhhcCEEEEEeCCHHHHHHHHHHhccC---CceEEEEccHHHCCCCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHh
Confidence 999876668999999999999999887543 479999999999888889999999999999995 478999999999
Q ss_pred cCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 253 TAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 253 LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
|||||++++.+........ .. .......+++.+++.++|+++||+++++....
T Consensus 187 LkpgG~l~i~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 187 LTPNGYIFFKENCSTGDRF---LV------------DKEDSSLTRSDIHYKRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp EEEEEEEEEEEEBC--CCE---EE------------ETTTTEEEBCHHHHHHHHHHHTCCEEEEEECT
T ss_pred cCCCeEEEEEecCCCcccc---ee------------cccCCcccCCHHHHHHHHHHCCCEEEEeeecC
Confidence 9999999999853321110 00 00011123589999999999999999887654
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-21 Score=182.90 Aligned_cols=154 Identities=20% Similarity=0.217 Sum_probs=122.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-----C-C-CCCeEEEEcCCCCC------C
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-----G-L-ADKVSFQVGDALQQ------P 221 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~-----~-~-~~~v~~~~~d~~~~------~ 221 (380)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++... | . ..++.|+++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 358899999999999999999875 569999999999999999987654 3 2 25899999999987 8
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++++..++++++++|||||+|++.++...... ....... . ..........++.++
T Consensus 162 ~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~------~~~~~~~-~-~~~~~~~~~~~~~~~ 233 (383)
T 4fsd_A 162 VPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL------SEAAQQD-P-ILYGECLGGALYLED 233 (383)
T ss_dssp CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC------CHHHHHC-H-HHHHTTCTTCCBHHH
T ss_pred CCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc------CHhHhhh-H-HHhhcccccCCCHHH
Confidence 8889999999999999999999999999999999999999986543221 1111111 1 111122234578899
Q ss_pred HHHHHHhCCCcEEEEEe
Q 016921 302 YVKLLQSLSLEDIKAED 318 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~ 318 (380)
+.++|+++||+++++..
T Consensus 234 ~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 234 FRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp HHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHCCCceEEEEe
Confidence 99999999999886654
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=170.80 Aligned_cols=100 Identities=24% Similarity=0.365 Sum_probs=90.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++ .+++.++++|++++++++++||+|++..++||
T Consensus 40 ~~~vLDvGcGtG~~~~~l~~~-~~~v~gvD~s~~ml~~a~~-------~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~ 111 (257)
T 4hg2_A 40 RGDALDCGCGSGQASLGLAEF-FERVHAVDPGEAQIRQALR-------HPRVTYAVAPAEDTGLPPASVDVAIAAQAMHW 111 (257)
T ss_dssp SSEEEEESCTTTTTHHHHHTT-CSEEEEEESCHHHHHTCCC-------CTTEEEEECCTTCCCCCSSCEEEEEECSCCTT
T ss_pred CCCEEEEcCCCCHHHHHHHHh-CCEEEEEeCcHHhhhhhhh-------cCCceeehhhhhhhcccCCcccEEEEeeehhH
Confidence 679999999999999999987 7899999999999987753 15799999999999999999999999999987
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
+ ++.+++++++|+|||||.|++..+...
T Consensus 112 ~-~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 112 F-DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp C-CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred h-hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 7 688999999999999999999886543
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-20 Score=173.41 Aligned_cols=163 Identities=20% Similarity=0.238 Sum_probs=126.7
Q ss_pred CCCEEEEECCCcChHHHHHH-HHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLA-KKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~-~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..++ ... +.+|+|+|+|+.+++.+++++...++.++++++++|+.+++++ ++||+|++..+
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~fD~v~~~~~ 196 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTR-EGYDLLTSNGL 196 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCC-SCEEEEECCSS
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCcc-CCeEEEEECCh
Confidence 48899999999999999985 333 7899999999999999999998888777899999999999877 99999999999
Q ss_pred cCCCCCHHH---HHHHHHHhcCCCcEEEEEeccCCCCCCCcc-----ccchHHHHHHHHHhh---ccCCCCCCCHHHHHH
Q 016921 236 GEHMPDKSK---FVSELARVTAPAGTIIIVTWCHRDLAPSEE-----SLQPWEQELLKKICD---AYYLPAWCSTADYVK 304 (380)
Q Consensus 236 l~~~~~~~~---~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 304 (380)
++|++++.. +++++.++|||||++++.++.......... .+............. ......+++.+++.+
T Consensus 197 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (305)
T 3ocj_A 197 NIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRA 276 (305)
T ss_dssp GGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTCTTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCcccccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHH
Confidence 999988765 799999999999999999876543322111 111111111111111 122234579999999
Q ss_pred HHHhCCCcEEEEEecCC
Q 016921 305 LLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~~ 321 (380)
+|+++||+++++.....
T Consensus 277 ~l~~aGF~~v~~~~~~~ 293 (305)
T 3ocj_A 277 QLEEAGFTDLRFEDDRA 293 (305)
T ss_dssp HHHHTTCEEEEEECCTT
T ss_pred HHHHCCCEEEEEEcccC
Confidence 99999999999886443
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-20 Score=164.03 Aligned_cols=154 Identities=15% Similarity=0.159 Sum_probs=116.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC-----------CCCCe
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG-----------LADKV 210 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~-----------~~~~v 210 (380)
+.+++..+.+.. +.+|||+|||+|..+..+++. +.+|+|+|+|+.|++.|+++..... ...++
T Consensus 11 l~~~~~~l~~~~-----~~~vLD~GCG~G~~~~~la~~-g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v 84 (203)
T 1pjz_A 11 LQQYWSSLNVVP-----GARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGI 84 (203)
T ss_dssp HHHHHHHHCCCT-----TCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSS
T ss_pred HHHHHHhcccCC-----CCEEEEeCCCCcHhHHHHHHC-CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCcc
Confidence 334445444443 889999999999999999997 8899999999999999998764210 12579
Q ss_pred EEEEcCCCCCCCCC-CCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHH
Q 016921 211 SFQVGDALQQPFPD-GQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKI 287 (380)
Q Consensus 211 ~~~~~d~~~~~~~~-~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 287 (380)
+++++|+.++++++ ++||+|++..+++|++. ...++++++++|||||++++.........
T Consensus 85 ~~~~~d~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~~~l~~~~~~~~~----------------- 147 (203)
T 1pjz_A 85 EIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQAL----------------- 147 (203)
T ss_dssp EEEEECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSS-----------------
T ss_pred EEEECccccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCccc-----------------
Confidence 99999999988665 79999999999999964 45799999999999999555543322100
Q ss_pred hhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 288 CDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 288 ~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
....+...+.+++.+++++ ||+++.++....
T Consensus 148 --~~~~~~~~~~~el~~~~~~-gf~i~~~~~~~~ 178 (203)
T 1pjz_A 148 --LEGPPFSVPQTWLHRVMSG-NWEVTKVGGQDT 178 (203)
T ss_dssp --SSSCCCCCCHHHHHHTSCS-SEEEEEEEESSC
T ss_pred --cCCCCCCCCHHHHHHHhcC-CcEEEEeccccc
Confidence 0011112578999999998 999888776554
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-20 Score=165.91 Aligned_cols=145 Identities=17% Similarity=0.242 Sum_probs=122.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++....+...++.|+++|+.+++ ++++||+|++..+++|
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~~l~~ 144 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASP-ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWR-PTELFDLIFDYVFFCA 144 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBT-TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCC-CSSCEEEEEEESSTTT
T ss_pred CCCEEEeCCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCC-CCCCeeEEEEChhhhc
Confidence 459999999999999999875 78999999999999999999876555567999999999976 4579999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|||||.+++.++....... ..+..++.+++.++|+++||+++++
T Consensus 145 ~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~l~~~Gf~~~~~ 204 (235)
T 3lcc_A 145 IEPEMRPAWAKSMYELLKPDGELITLMYPITDHVG--------------------GPPYKVDVSTFEEVLVPIGFKAVSV 204 (235)
T ss_dssp SCGGGHHHHHHHHHHHEEEEEEEEEEECCCSCCCS--------------------CSSCCCCHHHHHHHHGGGTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCCcEEEEEEecccccCC--------------------CCCccCCHHHHHHHHHHcCCeEEEE
Confidence 98 8899999999999999999998865432110 1112267899999999999999999
Q ss_pred EecCCCcCC
Q 016921 317 EDWSQNVAP 325 (380)
Q Consensus 317 ~~~~~~~~~ 325 (380)
+.....+..
T Consensus 205 ~~~~~~~~~ 213 (235)
T 3lcc_A 205 EENPHAIPT 213 (235)
T ss_dssp EECTTCCTT
T ss_pred EecCCcccc
Confidence 888776543
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.7e-22 Score=190.53 Aligned_cols=162 Identities=16% Similarity=0.201 Sum_probs=121.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV-SFQ 213 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~ 213 (380)
.....++.+.++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++ +.+... .+.
T Consensus 89 ~~~~~~~~~~l~~~~~~~~-----~~~VLDiGcG~G~~~~~l~~~-g~~v~gvD~s~~~~~~a~~~----~~~~~~~~~~ 158 (416)
T 4e2x_A 89 REHFAMLARDFLATELTGP-----DPFIVEIGCNDGIMLRTIQEA-GVRHLGFEPSSGVAAKAREK----GIRVRTDFFE 158 (416)
T ss_dssp HHHHHHHHHHHHHTTTCSS-----SCEEEEETCTTTTTHHHHHHT-TCEEEEECCCHHHHHHHHTT----TCCEECSCCS
T ss_pred HHHHHHHHHHHHHHhCCCC-----CCEEEEecCCCCHHHHHHHHc-CCcEEEECCCHHHHHHHHHc----CCCcceeeec
Confidence 3445667777777776544 889999999999999999986 78999999999999998864 322111 122
Q ss_pred EcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH-Hhhcc-
Q 016921 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK-ICDAY- 291 (380)
Q Consensus 214 ~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~- 291 (380)
..+...+++++++||+|++.++++|++++..++++++++|||||++++...... ..... .....
T Consensus 159 ~~~~~~l~~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~--------------~~~~~~~~~~~~ 224 (416)
T 4e2x_A 159 KATADDVRRTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFVFEDPYLG--------------DIVAKTSFDQIF 224 (416)
T ss_dssp HHHHHHHHHHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEEEEEECHH--------------HHHHHTCGGGCS
T ss_pred hhhHhhcccCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEEEEeCChH--------------Hhhhhcchhhhh
Confidence 334444556678999999999999999999999999999999999999764211 01110 01111
Q ss_pred -CCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 292 -YLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 292 -~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
....+++.+++.++++++||++++++.+.
T Consensus 225 ~~~~~~~s~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 225 DEHFFLFSATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp TTCCEECCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred hhhhhcCCHHHHHHHHHHcCCEEEEEEEcc
Confidence 11135799999999999999999998765
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=8.1e-20 Score=168.60 Aligned_cols=165 Identities=19% Similarity=0.187 Sum_probs=120.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.|+++....++..++.++++|+.+.++ ++++||+|++..++
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l 143 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 143 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECchh
Confidence 38899999999999999988863459999999999999999999887776689999999999887 57899999999999
Q ss_pred CC----CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCC-------CCccccchHHH--HHHHH-Hhhcc------CC---
Q 016921 237 EH----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLA-------PSEESLQPWEQ--ELLKK-ICDAY------YL--- 293 (380)
Q Consensus 237 ~~----~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~-------~~~~~~~~~~~--~~~~~-~~~~~------~~--- 293 (380)
+| ..+...+++++.++|||||.+++..+...... .....+..... ..+.. ....+ ..
T Consensus 144 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~ 223 (298)
T 1ri5_A 144 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNC 223 (298)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSE
T ss_pred hhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEchhhcCC
Confidence 77 35678999999999999999999875321000 00000000000 00000 00000 00
Q ss_pred -CCCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 294 -PAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 294 -~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
..+++++++.++|+++||++++...+...
T Consensus 224 ~~~~~~~~~l~~ll~~aGf~~v~~~~~~~~ 253 (298)
T 1ri5_A 224 IEYFVDFTRMVDGFKRLGLSLVERKGFIDF 253 (298)
T ss_dssp EEECCCHHHHHHHHHTTTEEEEEEEEHHHH
T ss_pred cccccCHHHHHHHHHHcCCEEEEecCHHHH
Confidence 13568999999999999999998766543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.3e-20 Score=162.81 Aligned_cols=159 Identities=22% Similarity=0.306 Sum_probs=123.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....++ ..++.+..+|+..+++++++||+|++.
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~ 108 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASK-GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVMQ 108 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEEE
T ss_pred CCCeEEEECCCCCHHHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEEc
Confidence 3889999999999999999987 88999999999999999998876654 236899999999998888999999999
Q ss_pred cccCCCCCHH---HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc--c-----------CCCCCC
Q 016921 234 ESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA--Y-----------YLPAWC 297 (380)
Q Consensus 234 ~~l~~~~~~~---~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----------~~~~~~ 297 (380)
.+++|++++. .+++++.++|||||.+++.++...... ..+.......+...... + ....++
T Consensus 109 ~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (235)
T 3sm3_A 109 AFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHL---KLYRKRYLHDFPITKEEGSFLARDPETGETEFIAHHF 185 (235)
T ss_dssp SCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTS---HHHHHHHHHHHHHHCSTTEEEEECTTTCCEEEEEECB
T ss_pred chhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhH---HHHHHHhhhhccchhhhcceEecccccCCcceeeEeC
Confidence 9999999887 899999999999999999987543221 11111111111110000 0 001257
Q ss_pred CHHHHHHHHHhCCCcEEEEEecC
Q 016921 298 STADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
+.+++.++|+++||+++++....
T Consensus 186 ~~~~l~~ll~~aGf~~~~~~~~~ 208 (235)
T 3sm3_A 186 TEKELVFLLTDCRFEIDYFRVKE 208 (235)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEecc
Confidence 89999999999999999886543
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-20 Score=167.21 Aligned_cols=141 Identities=18% Similarity=0.185 Sum_probs=115.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ +.++.+|+.+. ++++++||+|++..+
T Consensus 41 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~---------~~~~~~d~~~~~~~~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 41 GCRRVLDIGCGRGEFLELCKEE-GIESIGVDINEDMIKFCEGK---------FNVVKSDAIEYLKSLPDKYLDGVMISHF 110 (240)
T ss_dssp TCSCEEEETCTTTHHHHHHHHH-TCCEEEECSCHHHHHHHHTT---------SEEECSCHHHHHHTSCTTCBSEEEEESC
T ss_pred CCCeEEEEeCCCCHHHHHHHhC-CCcEEEEECCHHHHHHHHhh---------cceeeccHHHHhhhcCCCCeeEEEECCc
Confidence 4789999999999999999987 88999999999999998753 78899998875 778899999999999
Q ss_pred cCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 236 GEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 236 l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
++|++ +...+++++.++|||||++++..+.... .. . +...........+++.+++.++++++||++
T Consensus 111 l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-------~~----~-~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~ 178 (240)
T 3dli_A 111 VEHLDPERLFELLSLCYSKMKYSSYIVIESPNPTS-------LY----S-LINFYIDPTHKKPVHPETLKFILEYLGFRD 178 (240)
T ss_dssp GGGSCGGGHHHHHHHHHHHBCTTCCEEEEEECTTS-------HH----H-HHHHTTSTTCCSCCCHHHHHHHHHHHTCEE
T ss_pred hhhCCcHHHHHHHHHHHHHcCCCcEEEEEeCCcch-------hH----H-HHHHhcCccccccCCHHHHHHHHHHCCCeE
Confidence 99998 4599999999999999999998754221 11 1 111111122224578999999999999999
Q ss_pred EEEEecC
Q 016921 314 IKAEDWS 320 (380)
Q Consensus 314 v~~~~~~ 320 (380)
+++..+.
T Consensus 179 ~~~~~~~ 185 (240)
T 3dli_A 179 VKIEFFE 185 (240)
T ss_dssp EEEEEEC
T ss_pred EEEEEec
Confidence 9988776
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.6e-20 Score=160.43 Aligned_cols=138 Identities=15% Similarity=0.159 Sum_probs=114.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. ++.+..+|+..++ ++++||+|++..+++
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 113 (211)
T 3e23_A 43 AGAKILELGCGAGYQAEAMLAA-GFDVDATDGSPELAAEASRRL-------GRPVRTMLFHQLD-AIDAYDAVWAHACLL 113 (211)
T ss_dssp TTCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH-------TSCCEECCGGGCC-CCSCEEEEEECSCGG
T ss_pred CCCcEEEECCCCCHHHHHHHHc-CCeEEEECCCHHHHHHHHHhc-------CCceEEeeeccCC-CCCcEEEEEecCchh
Confidence 3789999999999999999987 889999999999999999876 4678899999988 789999999999999
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC-CcEE
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS-LEDI 314 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG-f~~v 314 (380)
|++ +...+++++.++|||||++++......... .... .....+++.+++.++|+++| |+++
T Consensus 114 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~--~~~~--------------~~~~~~~~~~~~~~~l~~aG~f~~~ 177 (211)
T 3e23_A 114 HVPRDELADVLKLIWRALKPGGLFYASYKSGEGEG--RDKL--------------ARYYNYPSEEWLRARYAEAGTWASV 177 (211)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEECCSSCE--ECTT--------------SCEECCCCHHHHHHHHHHHCCCSEE
T ss_pred hcCHHHHHHHHHHHHHhcCCCcEEEEEEcCCCccc--cccc--------------chhccCCCHHHHHHHHHhCCCcEEE
Confidence 998 778999999999999999999864332210 0000 00113578999999999999 9999
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
++....
T Consensus 178 ~~~~~~ 183 (211)
T 3e23_A 178 AVESSE 183 (211)
T ss_dssp EEEEEE
T ss_pred EEEecc
Confidence 887554
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=162.89 Aligned_cols=160 Identities=16% Similarity=0.159 Sum_probs=125.8
Q ss_pred hhHHHHHHHHHHHhccchhhHHHhhccccccccc--CCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECC
Q 016921 90 AAARELKEGIAEFYDESSSLWEDIWGDHMHHGFY--EPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGC 167 (380)
Q Consensus 90 ~~~~~~~~~i~~~yd~~~~~y~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGc 167 (380)
..+..+.+.+.++|+.....|+..|+.+++.+.- ....... ......++++.-+..+.+++ +.+||||||
T Consensus 60 ~~~~~l~~~~~~~y~~~~~~~E~~wa~~l~~~~~p~~~l~~fp---y~~~~~~l~~~E~~la~l~~-----g~rVLDIGc 131 (298)
T 3fpf_A 60 AEMNHALSLIRKFYVNLGMKLEMEKAQEVIESDSPWETLRSFY---FYPRYLELLKNEAALGRFRR-----GERAVFIGG 131 (298)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSHHHHHHTST---THHHHHHHHHHHHHHTTCCT-----TCEEEEECC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHhhccCC---CcccHHHHHHHHHHHcCCCC-----cCEEEEECC
Confidence 4578899999999999999999999998855410 0000011 11223445555555566654 999999999
Q ss_pred CcChHHHH-HHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHH
Q 016921 168 GIGGSSRY-LAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (380)
Q Consensus 168 GtG~~~~~-l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 246 (380)
|+|.++.. +++..+++|+|+|+|+.|++.|+++++..|+ .+++|+++|+.+++ +++||+|++... .+++.+++
T Consensus 132 G~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl-~~v~~v~gDa~~l~--d~~FDvV~~~a~---~~d~~~~l 205 (298)
T 3fpf_A 132 GPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGV-DGVNVITGDETVID--GLEFDVLMVAAL---AEPKRRVF 205 (298)
T ss_dssp CSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTC-CSEEEEESCGGGGG--GCCCSEEEECTT---CSCHHHHH
T ss_pred CccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCC-CCeEEEECchhhCC--CCCcCEEEECCC---ccCHHHHH
Confidence 99977644 4543489999999999999999999998888 79999999998875 689999998654 57899999
Q ss_pred HHHHHhcCCCcEEEEEe
Q 016921 247 SELARVTAPAGTIIIVT 263 (380)
Q Consensus 247 ~~~~r~LkpgG~l~~~~ 263 (380)
+++.++|||||+|++.+
T Consensus 206 ~el~r~LkPGG~Lvv~~ 222 (298)
T 3fpf_A 206 RNIHRYVDTETRIIYRT 222 (298)
T ss_dssp HHHHHHCCTTCEEEEEE
T ss_pred HHHHHHcCCCcEEEEEc
Confidence 99999999999999976
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-19 Score=163.13 Aligned_cols=160 Identities=15% Similarity=0.151 Sum_probs=118.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++.. ..++.++++|+.++++++++||+|++..+++
T Consensus 44 ~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 119 (253)
T 3g5l_A 44 NQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT----SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH 119 (253)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC----CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc----cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence 489999999999999999998733399999999999999998764 3589999999999988889999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc--------c--cchHHHHHHHH-Hhh-c----cCCCCCCCHHH
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE--------S--LQPWEQELLKK-ICD-A----YYLPAWCSTAD 301 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~--------~--~~~~~~~~~~~-~~~-~----~~~~~~~~~~~ 301 (380)
|++++..+++++.++|||||.+++............. . ...+. ..+.. ... . .......+.++
T Consensus 120 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~t~~~ 198 (253)
T 3g5l_A 120 YIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDETGNKLHWPVD-RYFNESMRTSHFLGEDVQKYHRTVTT 198 (253)
T ss_dssp GCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHSSSSCSCEECSSCCEEEEEEC-CTTCCCEEEEEETTEEEEEECCCHHH
T ss_pred hhhhHHHHHHHHHHHcCCCcEEEEEeCCCccccCccccceeccCCceEEEEec-cccccceEEEeeccccCccEecCHHH
Confidence 9999999999999999999999997542110000000 0 00000 00000 000 0 00000138999
Q ss_pred HHHHHHhCCCcEEEEEecCCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+.++|+++||+++++.+....
T Consensus 199 ~~~~l~~aGF~~~~~~e~~~~ 219 (253)
T 3g5l_A 199 YIQTLLKNGFQINSVIEPEPA 219 (253)
T ss_dssp HHHHHHHTTEEEEEEECCCCC
T ss_pred HHHHHHHcCCeeeeeecCCCc
Confidence 999999999999998876543
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-19 Score=158.12 Aligned_cols=139 Identities=21% Similarity=0.213 Sum_probs=111.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +|+|+|+.+++.++++ ++.++++|+.++++++++||+|++..+++|
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~ 114 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR--------GVFVLKGTAENLPLKDESFDFALMVTTICF 114 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT--------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc--------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence 678999999999999888653 9999999999998874 588999999998888889999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh---ccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD---AYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
++++..+++++.++|+|||.+++.++.... .+ ......... ......+++.+++.++|+++||++++
T Consensus 115 ~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~---------~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~ 184 (219)
T 1vlm_A 115 VDDPERALKEAYRILKKGGYLIVGIVDRES---------FL-GREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 184 (219)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSS---------HH-HHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccCHHHHHHHHHHHcCCCcEEEEEEeCCcc---------HH-HHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999998753211 11 111111111 11122457999999999999999998
Q ss_pred EEecC
Q 016921 316 AEDWS 320 (380)
Q Consensus 316 ~~~~~ 320 (380)
+....
T Consensus 185 ~~~~~ 189 (219)
T 1vlm_A 185 VVQTL 189 (219)
T ss_dssp EEEEC
T ss_pred Eeccc
Confidence 76554
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-20 Score=165.53 Aligned_cols=152 Identities=20% Similarity=0.307 Sum_probs=112.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCC-CCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFP-DGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~-~~~fD~V~~~~ 234 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++.+...|+.++ ++. +++||+|++..
T Consensus 53 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~ 124 (227)
T 3e8s_A 53 PERVLDLGCGEGWLLRALADR-GIEAVGVDGDRTLVDAARAA-------GAGEVHLASYAQLAEAKVPVGKDYDLICANF 124 (227)
T ss_dssp CSEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHT-------CSSCEEECCHHHHHTTCSCCCCCEEEEEEES
T ss_pred CCEEEEeCCCCCHHHHHHHHC-CCEEEEEcCCHHHHHHHHHh-------cccccchhhHHhhcccccccCCCccEEEECc
Confidence 789999999999999999987 88999999999999999875 3577888888775 433 45599999999
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc--CCCCCCCHHHHHHHHHhCCCc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY--YLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ll~~aGf~ 312 (380)
+++ ..++..++++++++|||||++++.++........ .....+....+....... ....+++.+++.++|+++||+
T Consensus 125 ~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~ 202 (227)
T 3e8s_A 125 ALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADG-DYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALDMAGLR 202 (227)
T ss_dssp CCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT-CCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHHHTTEE
T ss_pred hhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCcc-ccccccchhhhhccccCcccceEEEecHHHHHHHHHHcCCe
Confidence 999 7889999999999999999999998754332211 000000000000000000 001246899999999999999
Q ss_pred EEEEEecC
Q 016921 313 DIKAEDWS 320 (380)
Q Consensus 313 ~v~~~~~~ 320 (380)
++++....
T Consensus 203 ~~~~~~~~ 210 (227)
T 3e8s_A 203 LVSLQEPQ 210 (227)
T ss_dssp EEEEECCC
T ss_pred EEEEecCC
Confidence 99987643
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-18 Score=164.37 Aligned_cols=164 Identities=20% Similarity=0.245 Sum_probs=129.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
....++...+... ..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|+.+|+.
T Consensus 190 ~~~~l~~~~~~~~-----~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~- 262 (369)
T 3gwz_A 190 EAGQVAAAYDFSG-----AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFF- 262 (369)
T ss_dssp HHHHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-
T ss_pred hHHHHHHhCCCcc-----CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCC-
Confidence 3455666665543 7899999999999999999987 779999999 9999999999998888889999999998
Q ss_pred CCCCCCCccEEEeccccCCCCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.+++. .||+|++..+++++++.. +++++++++|||||+|++.+...+...... ....+... ..... ...+
T Consensus 263 ~~~p~-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~----~~~~d~~~-~~~~~--g~~~ 334 (369)
T 3gwz_A 263 ETIPD-GADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRLLVIDNLIDERPAAS----TLFVDLLL-LVLVG--GAER 334 (369)
T ss_dssp TCCCS-SCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEEBCCSSCCHH----HHHHHHHH-HHHHS--CCCB
T ss_pred CCCCC-CceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc----hhHhhHHH-HhhcC--CccC
Confidence 45555 899999999999998875 799999999999999999997654422111 11111111 11111 2247
Q ss_pred CHHHHHHHHHhCCCcEEEEEec
Q 016921 298 STADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
+.++|.++|+++||+++++...
T Consensus 335 t~~e~~~ll~~aGf~~~~~~~~ 356 (369)
T 3gwz_A 335 SESEFAALLEKSGLRVERSLPC 356 (369)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEC
T ss_pred CHHHHHHHHHHCCCeEEEEEEC
Confidence 8999999999999999998763
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.2e-19 Score=167.38 Aligned_cols=150 Identities=15% Similarity=0.220 Sum_probs=108.7
Q ss_pred CCCEEEEECCCcChHHHHHH----HHc-CCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEcCCCCCC------C
Q 016921 158 RPKNVVDVGCGIGGSSRYLA----KKF-GAK--CQGITLSPVQAQRANALAAARGLADKVSF--QVGDALQQP------F 222 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~----~~~-~~~--v~giD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~~~------~ 222 (380)
++.+|||||||+|.++..++ ... +.. ++|+|+|+.|++.|++++...+...++.+ ..+++++++ +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 47899999999998765433 332 454 49999999999999999865422245554 455555432 5
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC---CCCCCCH
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY---LPAWCST 299 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 299 (380)
++++||+|++..+++|++|+.+++++++++|||||++++...... . .+ ...+........ ...+++.
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~------~---~~-~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS------S---GW-DKLWKKYGSRFPQDDLCQYITS 201 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTT------S---HH-HHHHHHHGGGSCCCTTCCCCCH
T ss_pred CCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCC------c---cH-HHHHHHHHHhccCCCcccCCCH
Confidence 678999999999999999999999999999999999999864321 1 11 112222222111 2246789
Q ss_pred HHHHHHHHhCCCcEEEEE
Q 016921 300 ADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~~ 317 (380)
+++.++|+++||+++...
T Consensus 202 ~~~~~~l~~aGf~~~~~~ 219 (292)
T 2aot_A 202 DDLTQMLDNLGLKYECYD 219 (292)
T ss_dssp HHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHCCCceEEEE
Confidence 999999999999987643
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-19 Score=165.02 Aligned_cols=152 Identities=19% Similarity=0.133 Sum_probs=121.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|+.+|+. .+++. +||+|++..++
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~~vl 245 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFF-DPLPA-GAGGYVLSAVL 245 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTT-SCCCC-SCSEEEEESCG
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCC-CCCCC-CCcEEEEehhh
Confidence 47899999999999999999987 789999999 9999999999998888789999999997 35554 89999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
||+++. .+++++++++|||||+|++.+...+... . .. ..+... ..... ...++.++|.++|+++||+++
T Consensus 246 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~----~-~~-~~d~~~-~~~~~--~~~~t~~e~~~ll~~aGf~~~ 316 (332)
T 3i53_A 246 HDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEH----A-GT-GMDLRM-LTYFG--GKERSLAELGELAAQAGLAVR 316 (332)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC-------C-CH-HHHHHH-HHHHS--CCCCCHHHHHHHHHHTTEEEE
T ss_pred ccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCC----c-cH-HHHHHH-HhhCC--CCCCCHHHHHHHHHHCCCEEE
Confidence 999885 7899999999999999999997654431 1 11 111111 11111 124689999999999999999
Q ss_pred EEEecCC
Q 016921 315 KAEDWSQ 321 (380)
Q Consensus 315 ~~~~~~~ 321 (380)
++.....
T Consensus 317 ~~~~~~~ 323 (332)
T 3i53_A 317 AAHPISY 323 (332)
T ss_dssp EEEECSS
T ss_pred EEEECCC
Confidence 9876643
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-19 Score=166.77 Aligned_cols=169 Identities=20% Similarity=0.259 Sum_probs=130.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+..++..+.... +.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...+++++++++.+|+.+
T Consensus 178 ~~~~l~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 251 (359)
T 1x19_A 178 AIQLLLEEAKLDG-----VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 251 (359)
T ss_dssp HHHHHHHHCCCTT-----CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTT
T ss_pred hHHHHHHhcCCCC-----CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCcccc
Confidence 4456666665443 8899999999999999999987 679999999 99999999999888887789999999998
Q ss_pred CCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
.++++. |+|++..+++|+++ ...++++++++|||||++++.++..+.. ....+.... ..+...........++
T Consensus 252 ~~~~~~--D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~--~~~~~~~~~-~~~~~~~~g~~~~~~~ 326 (359)
T 1x19_A 252 ESYPEA--DAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP--ENPNFDYLS-HYILGAGMPFSVLGFK 326 (359)
T ss_dssp SCCCCC--SEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEEEEEEECCCCT--TSCCHHHHH-HHGGGGGSSCCCCCCC
T ss_pred CCCCCC--CEEEEechhccCCHHHHHHHHHHHHHhcCCCCEEEEEecccCCC--CCchHHHHH-HHHHhcCCCCcccCCC
Confidence 776543 99999999999987 7889999999999999999998765432 111111111 1111011111222357
Q ss_pred CHHHHHHHHHhCCCcEEEEEecC
Q 016921 298 STADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
+.+++.++|+++||+++++..+.
T Consensus 327 t~~e~~~ll~~aGf~~v~~~~~~ 349 (359)
T 1x19_A 327 EQARYKEILESLGYKDVTMVRKY 349 (359)
T ss_dssp CGGGHHHHHHHHTCEEEEEEEET
T ss_pred CHHHHHHHHHHCCCceEEEEecC
Confidence 99999999999999999887654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-19 Score=158.40 Aligned_cols=148 Identities=16% Similarity=0.132 Sum_probs=111.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+++. ++.++++|+...+.++++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~ 109 (217)
T 3jwh_A 30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAATVI 109 (217)
T ss_dssp CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEEEE
T ss_pred CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEeeH
Confidence 7899999999999999999875 3799999999999999999987766653 8999999998777667899999999
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 016921 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (380)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~ 307 (380)
.+++|++++ ..+++++.++|||||.+++....... ..+.. ..............++.+++. .+++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 180 (217)
T 3jwh_A 110 EVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYN-----VKFAN----LPAGKLRHKDHRFEWTRSQFQNWANKITE 180 (217)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHH-----HHTC---------------CCSCBCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccc-----hhhcc----cccccccccccccccCHHHHHHHHHHHHH
Confidence 999999865 89999999999999977776531000 00000 000000001111236889998 8899
Q ss_pred hCCCcEEE
Q 016921 308 SLSLEDIK 315 (380)
Q Consensus 308 ~aGf~~v~ 315 (380)
++||+++.
T Consensus 181 ~~Gf~v~~ 188 (217)
T 3jwh_A 181 RFAYNVQF 188 (217)
T ss_dssp HSSEEEEE
T ss_pred HcCceEEE
Confidence 99998754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-19 Score=152.86 Aligned_cols=134 Identities=22% Similarity=0.330 Sum_probs=113.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++.. .+|+|+|+++.+++.++++ .+++.+..+| .++++++||+|++..+++
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~------~~~v~~~~~d---~~~~~~~~D~v~~~~~l~ 86 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEK------FDSVITLSDP---KEIPDNSVDFILFANSFH 86 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTE-EEEEEECSCHHHHHHHHHH------CTTSEEESSG---GGSCTTCEEEEEEESCST
T ss_pred CCCeEEEECCCCCHHHHHHHhhc-CeEEEEeCCHHHHHHHHHh------CCCcEEEeCC---CCCCCCceEEEEEccchh
Confidence 37899999999999999999875 4999999999999999887 2579999999 566788999999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
|++++..+++++.++|||||++++.++.......... ....++.+++.++|+ ||++++..
T Consensus 87 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 87 DMDDKQHVISEVKRILKDDGRVIIIDWRKENTGIGPP------------------LSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp TCSCHHHHHHHHHHHEEEEEEEEEEEECSSCCSSSSC------------------GGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred cccCHHHHHHHHHHhcCCCCEEEEEEcCccccccCch------------------HhhhcCHHHHHHHHh--CcEEEEcc
Confidence 9999999999999999999999999876543221110 012368999999999 99999988
Q ss_pred ecCC
Q 016921 318 DWSQ 321 (380)
Q Consensus 318 ~~~~ 321 (380)
.+..
T Consensus 147 ~~~~ 150 (170)
T 3i9f_A 147 NPTP 150 (170)
T ss_dssp CSST
T ss_pred CCCC
Confidence 7764
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=162.88 Aligned_cols=170 Identities=13% Similarity=0.154 Sum_probs=129.8
Q ss_pred HHHHHHHHcCC--CCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 141 MIEETLRFAGV--SEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 141 ~~~~ll~~~~~--~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+..++..+.. . ++.+|||||||+|.++..+++.+ +.+++++|++ .+++.|++++...++.++++++.+|+
T Consensus 151 ~~~~~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~ 224 (335)
T 2r3s_A 151 PAQLIAQLVNENKI-----EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSA 224 (335)
T ss_dssp HHHHHHHHHTC--C-----CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCT
T ss_pred hHHHHHHhcccccC-----CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccc
Confidence 34455555554 3 37899999999999999999987 6899999999 99999999998888777899999999
Q ss_pred CCCCCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh-ccCCC
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLP 294 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 294 (380)
.+.+++. .||+|++..+++|+++. ..++++++++|+|||++++.++........ . .....+..... .....
T Consensus 225 ~~~~~~~-~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~---~~~~~~~~~~~~~~~~~ 298 (335)
T 2r3s_A 225 FEVDYGN-DYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRIT--P---PDAAAFSLVMLATTPNG 298 (335)
T ss_dssp TTSCCCS-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSC--S---HHHHHHHHHHHHHSSSC
T ss_pred ccCCCCC-CCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCC--c---hHHHHHHHHHHeeCCCC
Confidence 8877654 49999999999999654 799999999999999999999765432111 1 11111111111 11122
Q ss_pred CCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 295 AWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 295 ~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
..++.+++.++|+++||+++++......
T Consensus 299 ~~~t~~~~~~ll~~aGf~~~~~~~~~~~ 326 (335)
T 2r3s_A 299 DAYTFAEYESMFSNAGFSHSQLHSLPTT 326 (335)
T ss_dssp CCCCHHHHHHHHHHTTCSEEEEECCTTS
T ss_pred CcCCHHHHHHHHHHCCCCeeeEEECCCC
Confidence 3579999999999999999998776543
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-19 Score=158.70 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=93.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc-cc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l 236 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.++++|+.+++++ ++||+|++.. ++
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~-~~fD~v~~~~~~l 112 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNIN-RKFDLITCCLDST 112 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCCS-CCEEEEEECTTGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC-CCcEEEEECCHHHHHHHHHHHhhcCC--CeEEEecccccCCcc-CCceEEEEcCccc
Confidence 3789999999999999999987 78999999999999999999877664 799999999998876 8999999998 99
Q ss_pred CCC---CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHM---PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~---~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+ .+...+++++.++|||||.+++...
T Consensus 113 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (246)
T 1y8c_A 113 NYIIDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp GGCCSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999 5678999999999999999998653
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=168.42 Aligned_cols=173 Identities=13% Similarity=0.113 Sum_probs=123.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~ 218 (380)
.+..++..+... +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. .++.++++|+.
T Consensus 71 ~~~~~~~~~~~~------~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~ 143 (299)
T 3g2m_A 71 EAREFATRTGPV------SGPVLELAAGMGRLTFPFLDL-GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143 (299)
T ss_dssp HHHHHHHHHCCC------CSCEEEETCTTTTTHHHHHTT-TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTT
T ss_pred HHHHHHHhhCCC------CCcEEEEeccCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchh
Confidence 344455555432 459999999999999999987 889999999999999999998765532 57999999999
Q ss_pred CCCCCCCCccEEEec-cccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc----ccchHHHHHHHHHhhc-
Q 016921 219 QQPFPDGQFDLVWSM-ESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE----SLQPWEQELLKKICDA- 290 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~-~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~- 290 (380)
++++ +++||+|++. .+++|++ +...+++++.++|||||.|++..+.......... .+.......+. +...
T Consensus 144 ~~~~-~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~ 221 (299)
T 3g2m_A 144 AFAL-DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGKFLLSLAMSEAAESEPLERKQELPGRSGRRYV-LHVRH 221 (299)
T ss_dssp BCCC-SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEEEEEEEECCHHHHSCCCCC--------------CCEEE
T ss_pred cCCc-CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcEEEEEeecCccccccchhccceeecCCCcEEE-EEEEE
Confidence 9887 6899999865 5666665 3589999999999999999998865432110000 00000000000 0000
Q ss_pred ------------------------cCCCCCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 291 ------------------------YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 291 ------------------------~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
....++++.+++.++|+++||+++++..+...
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~ 277 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASG 277 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTT
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCC
Confidence 00012469999999999999999999988754
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.1e-19 Score=153.79 Aligned_cols=134 Identities=19% Similarity=0.228 Sum_probs=105.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+ +. +|+|+|+|+.+++.++++. .++.++++|+.++++++++||+|++..++
T Consensus 36 ~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 105 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA------PEATWVRAWGEALPFPGESFDVVLLFTTL 105 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC------TTSEEECCCTTSCCSCSSCEEEEEEESCT
T ss_pred CCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcccccCCCCCCcEEEEEEcChh
Confidence 3789999999999998877 55 9999999999999998865 47899999999998888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh-hccCCCCCCCHHHHHHHHHhCC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC-DAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+|++++..+++++.++|||||.+++.++.... ..... ........ ..+...++++.+++.++|+ |
T Consensus 106 ~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~------~~~~~-~~~~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 106 EFVEDVERVLLEARRVLRPGGALVVGVLEALS------PWAAL-YRRLGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp TTCSCHHHHHHHHHHHEEEEEEEEEEEECTTS------HHHHH-HHHHHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred hhcCCHHHHHHHHHHHcCCCCEEEEEecCCcC------cHHHH-HHHHhhccCccccccccCCHHHHHHHhc--C
Confidence 99999999999999999999999998854321 00000 01111111 1111234689999999999 7
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.80 E-value=5.3e-19 Score=168.11 Aligned_cols=157 Identities=17% Similarity=0.203 Sum_probs=120.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++|+.+|+.+. |++ ++||+|++..+
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~~v 257 (363)
T 3dp7_A 180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMSQF 257 (363)
T ss_dssp CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEESC
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEech
Confidence 6899999999999999999987 789999999 999999999998777777899999999886 465 78999999999
Q ss_pred cCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 236 GEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 236 l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
+|++++. ..++++++++|||||+|++.+...+........+...... +............++.+++.++|+++||++
T Consensus 258 lh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~ 336 (363)
T 3dp7_A 258 LDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYETASYCLTQIS-LYFTAMANGNSKMFHSDDLIRCIENAGLEV 336 (363)
T ss_dssp STTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSHHHHHHHHHHH-HHHHHSSCSSCCSCCHHHHHHHHHTTTEEE
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCccccchhhHHHHhh-hhHHhhhCCCCcccCHHHHHHHHHHcCCeE
Confidence 9999765 5789999999999999999997554322110000000000 000011112223579999999999999999
Q ss_pred EEEEe
Q 016921 314 IKAED 318 (380)
Q Consensus 314 v~~~~ 318 (380)
+++..
T Consensus 337 v~~~~ 341 (363)
T 3dp7_A 337 EEIQD 341 (363)
T ss_dssp SCCCC
T ss_pred EEEEe
Confidence 87653
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.7e-18 Score=153.35 Aligned_cols=146 Identities=18% Similarity=0.251 Sum_probs=116.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++. +.+++|+|+|+.+++.++++. ..+..+|+.+ .++++++||+|++..+
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~-~~~~~~~D~~~~~~~~~~~~~--------~~~~~~d~~~~~~~~~~~~fD~v~~~~~ 102 (230)
T 3cc8_A 32 EWKEVLDIGCSSGALGAAIKEN-GTRVSGIEAFPEAAEQAKEKL--------DHVVLGDIETMDMPYEEEQFDCVIFGDV 102 (230)
T ss_dssp TCSEEEEETCTTSHHHHHHHTT-TCEEEEEESSHHHHHHHHTTS--------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred CCCcEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHhC--------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence 4789999999999999999988 899999999999999887632 4789999987 5677789999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC----------CCCCCCHHHHHHH
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY----------LPAWCSTADYVKL 305 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~l 305 (380)
++|++++..+++++.++|+|||.+++....... ... .... ....+. ...+++.+++.++
T Consensus 103 l~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~-------~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (230)
T 3cc8_A 103 LEHLFDPWAVIEKVKPYIKQNGVILASIPNVSH-------ISV-LAPL---LAGNWTYTEYGLLDKTHIRFFTFNEMLRM 171 (230)
T ss_dssp GGGSSCHHHHHHHTGGGEEEEEEEEEEEECTTS-------HHH-HHHH---HTTCCCCBSSSTTBTTCCCCCCHHHHHHH
T ss_pred hhhcCCHHHHHHHHHHHcCCCCEEEEEeCCcch-------HHH-HHHH---hcCCceeccCCCCCcceEEEecHHHHHHH
Confidence 999999999999999999999999998743211 110 0011 111111 1135799999999
Q ss_pred HHhCCCcEEEEEecCCCc
Q 016921 306 LQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~~~ 323 (380)
|+++||+++++..+....
T Consensus 172 l~~~Gf~~~~~~~~~~~~ 189 (230)
T 3cc8_A 172 FLKAGYSISKVDRVYVDH 189 (230)
T ss_dssp HHHTTEEEEEEEEEECCC
T ss_pred HHHcCCeEEEEEecccCh
Confidence 999999999988776554
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.80 E-value=3e-19 Score=157.57 Aligned_cols=149 Identities=17% Similarity=0.140 Sum_probs=112.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~----~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.+++++...+++. +++++++|+...+.++++||+|++.
T Consensus 30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 109 (219)
T 3jwg_A 30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAATVI 109 (219)
T ss_dssp CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEEEH
Confidence 7899999999999999999875 3799999999999999999987666543 8999999998877777899999999
Q ss_pred cccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH----HHHH
Q 016921 234 ESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV----KLLQ 307 (380)
Q Consensus 234 ~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ll~ 307 (380)
.+++|++++ ..+++++.++|||||.+++......+ ..+...... ..........++.+++. ++++
T Consensus 110 ~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~l~~ 180 (219)
T 3jwg_A 110 EVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYN-----FHYGNLFEG----NLRHRDHRFEWTRKEFQTWAVKVAE 180 (219)
T ss_dssp SCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGG-----GCCCCT---------GGGCCTTSBCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhh-----hhhcccCcc----cccccCceeeecHHHHHHHHHHHHH
Confidence 999999865 79999999999999976665532111 001000000 00111112236889998 8899
Q ss_pred hCCCcEEEE
Q 016921 308 SLSLEDIKA 316 (380)
Q Consensus 308 ~aGf~~v~~ 316 (380)
++||++...
T Consensus 181 ~~Gf~v~~~ 189 (219)
T 3jwg_A 181 KYGYSVRFL 189 (219)
T ss_dssp HHTEEEEEE
T ss_pred HCCcEEEEE
Confidence 999976544
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-19 Score=165.22 Aligned_cols=99 Identities=23% Similarity=0.352 Sum_probs=89.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc-ccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 237 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++. .++.++++|+.++++ +++||+|++.. +++
T Consensus 51 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~fD~v~~~~~~l~ 122 (263)
T 3pfg_A 51 AASLLDVACGTGMHLRHLADS-FGTVEGLELSADMLAIARRRN------PDAVLHHGDMRDFSL-GRRFSAVTCMFSSIG 122 (263)
T ss_dssp CCEEEEETCTTSHHHHHHTTT-SSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTCCC-SCCEEEEEECTTGGG
T ss_pred CCcEEEeCCcCCHHHHHHHHc-CCeEEEEECCHHHHHHHHhhC------CCCEEEECChHHCCc-cCCcCEEEEcCchhh
Confidence 689999999999999999987 789999999999999998865 379999999999887 68999999998 999
Q ss_pred CCC---CHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 238 HMP---DKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
|++ +...+++++.++|||||.+++.++.
T Consensus 123 ~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~ 153 (263)
T 3pfg_A 123 HLAGQAELDAALERFAAHVLPDGVVVVEPWW 153 (263)
T ss_dssp GSCHHHHHHHHHHHHHHTEEEEEEEEECCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 996 5568899999999999999997653
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=155.71 Aligned_cols=154 Identities=19% Similarity=0.323 Sum_probs=116.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++. +. +|+|+|+|+.+++.++++... .++.++++|+.++++++++||+|++..++
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 117 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEH-GASYVLGLDLSEKMLARARAAGPD----TGITYERADLDKLHLPQDSFDLAYSSLAL 117 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHTSCS----SSEEEEECCGGGCCCCTTCEEEEEEESCG
T ss_pred CCCEEEEEcCcCCHHHHHHHHC-CCCeEEEEcCCHHHHHHHHHhccc----CCceEEEcChhhccCCCCCceEEEEeccc
Confidence 3789999999999999999987 66 999999999999999876532 36999999999988888999999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc------------ccchH------HHHHHHHHhhccCCCCCCC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE------------SLQPW------EQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~------------~~~~~------~~~~~~~~~~~~~~~~~~~ 298 (380)
+|++++..+++++.++|||||.+++.+........... ..... ...++. . .....+++
T Consensus 118 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~t 193 (243)
T 3bkw_A 118 HYVEDVARLFRTVHQALSPGGHFVFSTEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLA---K-GVVKHHRT 193 (243)
T ss_dssp GGCSCHHHHHHHHHHHEEEEEEEEEEEECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHH---H-SCCEEECC
T ss_pred cccchHHHHHHHHHHhcCcCcEEEEEeCCcccccCcCcceeecCCCceEEeecccccccceeeeecc---C-ceEEEecc
Confidence 99999999999999999999999998743110000000 00000 000010 0 00111258
Q ss_pred HHHHHHHHHhCCCcEEEEEecC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
.+++.++|+++||+++++....
T Consensus 194 ~~~~~~~l~~aGF~~~~~~~~~ 215 (243)
T 3bkw_A 194 VGTTLNALIRSGFAIEHVEEFC 215 (243)
T ss_dssp HHHHHHHHHHTTCEEEEEEECC
T ss_pred HHHHHHHHHHcCCEeeeeccCC
Confidence 9999999999999999987654
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=162.85 Aligned_cols=166 Identities=23% Similarity=0.235 Sum_probs=124.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..++..+.+. ++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+ +
T Consensus 172 ~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 244 (374)
T 1qzz_A 172 EAPADAYDWS-----AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 244 (374)
T ss_dssp HHHHHTSCCT-----TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCC-----CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-c
Confidence 3445554443 37899999999999999999987 689999999 99999999999888887799999999976 4
Q ss_pred CCCCCccEEEeccccCCCCCHH--HHHHHHHHhcCCCcEEEEEec--cCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 222 FPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTW--CHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
++. .||+|++..+++|+++.. .++++++++|||||++++.++ ..+... . ......+............+
T Consensus 245 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~ 317 (374)
T 1qzz_A 245 LPV-TADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGA--D----RFFSTLLDLRMLTFMGGRVR 317 (374)
T ss_dssp CSC-CEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------------HHHHHHHHHHHHHHHSCCCC
T ss_pred CCC-CCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCC--C----cchhhhcchHHHHhCCCcCC
Confidence 443 499999999999998764 899999999999999999987 432210 0 11111111111000012347
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
+.+++.++|+++||+++++......
T Consensus 318 ~~~~~~~ll~~aGf~~~~~~~~~~~ 342 (374)
T 1qzz_A 318 TRDEVVDLAGSAGLALASERTSGST 342 (374)
T ss_dssp CHHHHHHHHHTTTEEEEEEEEECCS
T ss_pred CHHHHHHHHHHCCCceEEEEECCCC
Confidence 9999999999999999998876543
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=7.5e-20 Score=166.26 Aligned_cols=164 Identities=10% Similarity=0.004 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--------
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-------- 206 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-------- 206 (380)
..+..+.+..++.. +. .++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++....
T Consensus 38 ~~~~~~~~~~~~~~-~~-----~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~ 111 (263)
T 2a14_A 38 LKFNLECLHKTFGP-GG-----LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAV 111 (263)
T ss_dssp HHHHHHHHHHHHST-TS-----CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHH
T ss_pred HHHHHHHHHHHhcC-CC-----CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHH
Confidence 44554455554422 22 24789999999999888776665224799999999999999987654310
Q ss_pred --------------------CCCeE-EEEcCCCCC-CC---CCCCccEEEeccccCCC----CCHHHHHHHHHHhcCCCc
Q 016921 207 --------------------ADKVS-FQVGDALQQ-PF---PDGQFDLVWSMESGEHM----PDKSKFVSELARVTAPAG 257 (380)
Q Consensus 207 --------------------~~~v~-~~~~d~~~~-~~---~~~~fD~V~~~~~l~~~----~~~~~~l~~~~r~LkpgG 257 (380)
..++. ++++|+.+. |+ ..++||+|++..+++|+ ++...++++++++|||||
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKPGG 191 (263)
T 2a14_A 112 KFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGG 191 (263)
T ss_dssp HHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEE
T ss_pred HHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCCCc
Confidence 01243 889999874 43 25799999999999986 345789999999999999
Q ss_pred EEEEEeccCCCCCCCccccchHHHHHHHHHhh-ccCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 258 TIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
.|++.+...... +. ... .+. ...++.+++.++|+++||++++...+.
T Consensus 192 ~li~~~~~~~~~------~~---------~g~~~~~-~~~~~~~~l~~~l~~aGF~i~~~~~~~ 239 (263)
T 2a14_A 192 HLVTTVTLRLPS------YM---------VGKREFS-CVALEKGEVEQAVLDAGFDIEQLLHSP 239 (263)
T ss_dssp EEEEEEESSCCE------EE---------ETTEEEE-CCCCCHHHHHHHHHHTTEEEEEEEEEC
T ss_pred EEEEEEeecCcc------ce---------eCCeEee-ccccCHHHHHHHHHHCCCEEEEEeecc
Confidence 999987532211 00 000 011 123689999999999999999988765
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.4e-19 Score=158.97 Aligned_cols=152 Identities=21% Similarity=0.237 Sum_probs=109.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. . .++++|+.++++++++||+|++..++.|
T Consensus 55 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~-----~--~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 126 (260)
T 2avn_A 55 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKGV-----K--NVVEAKAEDLPFPSGAFEAVLALGDVLS 126 (260)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHTC-----S--CEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCeEEEeCCCcCHHHHHHHHc-CCeEEEEeCCHHHHHHHHhhcC-----C--CEEECcHHHCCCCCCCEEEEEEcchhhh
Confidence 789999999999999999987 7899999999999999988652 1 2899999999888899999999887766
Q ss_pred C-CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCC---CccccchHHHHHHHHHhhc-cC-----CCCCCCHHHHHHHHHh
Q 016921 239 M-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAP---SEESLQPWEQELLKKICDA-YY-----LPAWCSTADYVKLLQS 308 (380)
Q Consensus 239 ~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~~~~~~~ll~~ 308 (380)
+ +++..+++++.++|||||.+++..+....... ....+ ......+...... .. ...+++++++.++
T Consensus 127 ~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--- 202 (260)
T 2avn_A 127 YVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAW-DQITRFLKTQTTSVGTTLFSFNSYAFKPEDLDSL--- 202 (260)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCH-HHHHHHHHHCEEEEECSSEEEEEECBCGGGGSSC---
T ss_pred ccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhH-HHHHHHHhccccccCCCceeEEEeccCHHHHHHh---
Confidence 6 78999999999999999999998753210000 00000 0000011100000 00 0125688888877
Q ss_pred CCCcEEEEEecCCC
Q 016921 309 LSLEDIKAEDWSQN 322 (380)
Q Consensus 309 aGf~~v~~~~~~~~ 322 (380)
+||+++++......
T Consensus 203 aGf~~~~~~~~~~~ 216 (260)
T 2avn_A 203 EGFETVDIRGIGVM 216 (260)
T ss_dssp TTEEEEEEEEECSS
T ss_pred cCceEEEEECCCCc
Confidence 99999998876543
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-18 Score=148.56 Aligned_cols=139 Identities=22% Similarity=0.336 Sum_probs=115.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ +++.++.+|+.++++ +++||+|++..+++|
T Consensus 33 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~~D~v~~~~~l~~ 109 (199)
T 2xvm_A 33 PGKTLDLGCGNGRNSLYLAAN-GYDVDAWDKNAMSIANVERIKSIENL-DNLHTRVVDLNNLTF-DRQYDFILSTVVLMF 109 (199)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTC-TTEEEEECCGGGCCC-CCCEEEEEEESCGGG
T ss_pred CCeEEEEcCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhCCC-CCcEEEEcchhhCCC-CCCceEEEEcchhhh
Confidence 779999999999999999987 88999999999999999999887776 369999999999887 789999999999999
Q ss_pred CC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
++ +...+++++.++|||||.+++.+.......+.. ......++.+++.+++++ |++++.
T Consensus 110 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~~--f~~~~~ 170 (199)
T 2xvm_A 110 LEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCT-----------------VGFPFAFKEGELRRYYEG--WERVKY 170 (199)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCC-----------------SCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCeEEEEEEeeccCCcCCC-----------------CCCCCccCHHHHHHHhcC--CeEEEe
Confidence 97 789999999999999999888765432211100 111224678999999986 998887
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
.+.
T Consensus 171 ~~~ 173 (199)
T 2xvm_A 171 NED 173 (199)
T ss_dssp ECC
T ss_pred ccc
Confidence 644
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-18 Score=157.18 Aligned_cols=142 Identities=13% Similarity=0.197 Sum_probs=111.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH----------c------CCCCCeEEEEcCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA----------R------GLADKVSFQVGDALQQP 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~----------~------~~~~~v~~~~~d~~~~~ 221 (380)
++.+|||+|||+|..+..|++. |.+|+|+|+|+.|++.|+++... . ....+++|+++|+.+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~ 146 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR-GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP 146 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC-CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccCC
Confidence 3789999999999999999987 88999999999999999876531 0 01257999999999987
Q ss_pred CCC-CCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 222 FPD-GQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 222 ~~~-~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+++ ++||+|++..+++|++ +...+++++.++|||||++++..+...... ..+.+...+
T Consensus 147 ~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~~~~~~~~-------------------~~g~~~~~~ 207 (252)
T 2gb4_A 147 RANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAVLSYDPTK-------------------HAGPPFYVP 207 (252)
T ss_dssp GGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTS-------------------CCCSSCCCC
T ss_pred cccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEEEecCCcc-------------------CCCCCCCCC
Confidence 654 8999999999999995 457899999999999999976654422110 001111258
Q ss_pred HHHHHHHHHhCCCcEEEEEecC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
++++.++++. +|+++..+.+.
T Consensus 208 ~~el~~~l~~-~f~v~~~~~~~ 228 (252)
T 2gb4_A 208 SAELKRLFGT-KCSMQCLEEVD 228 (252)
T ss_dssp HHHHHHHHTT-TEEEEEEEEEE
T ss_pred HHHHHHHhhC-CeEEEEEeccc
Confidence 9999999987 59988876543
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-19 Score=161.47 Aligned_cols=149 Identities=13% Similarity=0.067 Sum_probs=109.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-----------------CCCC------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-----------------GLAD------------ 208 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-----------------~~~~------------ 208 (380)
++.+|||||||+|.....++...+.+|+|+|+|+.|++.|++++... +...
T Consensus 71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 150 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 150 (289)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence 47899999999999655444433779999999999999998865321 1000
Q ss_pred CeEEEEcCCCC-CCC-----CCCCccEEEeccccCC----CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch
Q 016921 209 KVSFQVGDALQ-QPF-----PDGQFDLVWSMESGEH----MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (380)
Q Consensus 209 ~v~~~~~d~~~-~~~-----~~~~fD~V~~~~~l~~----~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~ 278 (380)
.+.++.+|+.+ +|+ ++++||+|++..+++| ++++..++++++++|||||+|++......... ..
T Consensus 151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~LkpGG~l~~~~~~~~~~~------~~ 224 (289)
T 2g72_A 151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWY------LA 224 (289)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEE------EE
T ss_pred hceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEEecCcceE------Ec
Confidence 15677889987 553 3467999999999999 56789999999999999999999863321100 00
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
........+++.+++.++|+++||+++.+..+..
T Consensus 225 ---------~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~ 258 (289)
T 2g72_A 225 ---------GEARLTVVPVSEEEVREALVRSGYKVRDLRTYIM 258 (289)
T ss_dssp ---------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred ---------CCeeeeeccCCHHHHHHHHHHcCCeEEEeeEeec
Confidence 0000112347899999999999999998876653
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-18 Score=153.37 Aligned_cols=104 Identities=31% Similarity=0.457 Sum_probs=93.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc--c
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--G 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~--l 236 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+ .+++++++|+.++++++++||+|++..+ +
T Consensus 39 ~~~vLDlG~G~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~ 115 (227)
T 1ve3_A 39 RGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIVH 115 (227)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEEeccCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhcC--CCceEEECchhcCCCCCCcEEEEEEcCchHh
Confidence 789999999999999999887 6699999999999999999987766 5799999999998877889999999998 5
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++..+...+++++.++|||||.+++.+..
T Consensus 116 ~~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 144 (227)
T 1ve3_A 116 FEPLELNQVFKEVRRVLKPSGKFIMYFTD 144 (227)
T ss_dssp CCHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEecC
Confidence 55567889999999999999999998754
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.77 E-value=6.3e-18 Score=159.83 Aligned_cols=160 Identities=15% Similarity=0.102 Sum_probs=117.8
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
...++..+++.. +.+|||||||+|.++..+++.+ +.+++++|+ +.++. +++....++.++++++.+|+. .
T Consensus 173 ~~~~~~~~~~~~-----~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~-~ 243 (348)
T 3lst_A 173 HLILARAGDFPA-----TGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFL-R 243 (348)
T ss_dssp HHHHHHHSCCCS-----SEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTT-T
T ss_pred HHHHHHhCCccC-----CceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCC-C
Confidence 445666665544 8899999999999999999987 678999999 44444 333333345578999999997 3
Q ss_pred CCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+++ +||+|++..++||+++. .+++++++++|||||+|++.+...+.... .... ..+............++
T Consensus 244 ~~p--~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~--~~~~----~~~d~~~~~~~~~~~~t 315 (348)
T 3lst_A 244 EVP--HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGND--AHQS----KEMDFMMLAARTGQERT 315 (348)
T ss_dssp CCC--CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSS--CCHH----HHHHHHHHHTTSCCCCB
T ss_pred CCC--CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchh----hhcChhhhhcCCCcCCC
Confidence 445 89999999999999887 69999999999999999999976544311 1111 11111111111223478
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q 016921 299 TADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~ 318 (380)
.++|.++|+++||+++++..
T Consensus 316 ~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 316 AAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHCCCceEEEEE
Confidence 99999999999999999876
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.7e-18 Score=159.44 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=119.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++++...++.++++++.+|+.+.+ +..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 7899999999999999999987 689999999 8899999999988888778999999998865 134679999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
||+++. ..++++++++|||||++++.+...+..... .......+..... .......++.++|.++|+++||+++
T Consensus 259 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~t~~e~~~ll~~aGf~~~ 334 (352)
T 3mcz_A 259 HYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVT--PALSADFSLHMMV--NTNHGELHPTPWIAGVVRDAGLAVG 334 (352)
T ss_dssp GGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSS--SHHHHHHHHHHHH--HSTTCCCCCHHHHHHHHHHTTCEEE
T ss_pred ccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCC--CchHHHhhHHHHh--hCCCCCcCCHHHHHHHHHHCCCcee
Confidence 999865 799999999999999999999765442211 1111111111111 1111224789999999999999998
Q ss_pred EE
Q 016921 315 KA 316 (380)
Q Consensus 315 ~~ 316 (380)
+.
T Consensus 335 ~~ 336 (352)
T 3mcz_A 335 ER 336 (352)
T ss_dssp EE
T ss_pred ee
Confidence 73
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=5.6e-19 Score=162.95 Aligned_cols=152 Identities=14% Similarity=0.249 Sum_probs=111.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC-------------------------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG------------------------------- 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~------------------------------- 205 (380)
++.+|||||||+|.++..+++.+ +.+|+|+|+|+.+++.|++++...+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 47899999999999999999987 6899999999999999998865433
Q ss_pred --------------------------CCCCeEEEEcCCCCCC-----CCCCCccEEEeccccCCCC------CHHHHHHH
Q 016921 206 --------------------------LADKVSFQVGDALQQP-----FPDGQFDLVWSMESGEHMP------DKSKFVSE 248 (380)
Q Consensus 206 --------------------------~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~l~~~~------~~~~~l~~ 248 (380)
.+.++.|+++|+...+ +.+++||+|+|..+++|+. +...++++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 2258999999998654 5678999999999998875 67889999
Q ss_pred HHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh--CCCcEEEEEe
Q 016921 249 LARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS--LSLEDIKAED 318 (380)
Q Consensus 249 ~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~--aGf~~v~~~~ 318 (380)
++++|||||+|++....+..... ...+... +........ +.++++.++|.+ +||+.+++..
T Consensus 206 ~~~~LkpGG~lil~~~~~~~y~~-~~~~~~~----~~~~~~~~~----~~p~~~~~~L~~~~~GF~~~~~~~ 268 (292)
T 3g07_A 206 IYRHLRPGGILVLEPQPWSSYGK-RKTLTET----IYKNYYRIQ----LKPEQFSSYLTSPDVGFSSYELVA 268 (292)
T ss_dssp HHHHEEEEEEEEEECCCHHHHHT-TTTSCHH----HHHHHHHCC----CCGGGHHHHHTSTTTCCCEEEEC-
T ss_pred HHHHhCCCcEEEEecCCchhhhh-hhcccHH----HHhhhhcEE----EcHHHHHHHHHhcCCCceEEEEec
Confidence 99999999999996532111100 0111111 111111111 347899999999 9998887643
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-17 Score=157.32 Aligned_cols=163 Identities=16% Similarity=0.161 Sum_probs=124.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
...++...+.. + .+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++++...++.++++++.+|+.+
T Consensus 157 ~~~~~~~~~~~-----~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 228 (334)
T 2ip2_A 157 FHEIPRLLDFR-----G-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ- 228 (334)
T ss_dssp HHHHHHHSCCT-----T-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-
T ss_pred HHHHHHhCCCC-----C-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-
Confidence 44555555432 3 899999999999999999987 679999999 99999999988776666789999999987
Q ss_pred CCCCCCccEEEeccccCCCCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
+++ ++||+|++..+++|+++.. .++++++++|||||++++.+...+.... ..... ..+...... .. ...++
T Consensus 229 ~~~-~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~-~~~~~~~~~-~~--~~~~t 301 (334)
T 2ip2_A 229 EVP-SNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRVVVIERTISASEP--SPMSV-LWDVHLFMA-CA--GRHRT 301 (334)
T ss_dssp CCC-SSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSSC--CHHHH-HHHHHHHHH-HS--CCCCB
T ss_pred CCC-CCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCC--cchhH-HhhhHhHhh-CC--CcCCC
Confidence 555 6899999999999998765 9999999999999999999876443211 11111 111111111 11 12368
Q ss_pred HHHHHHHHHhCCCcEEEEEec
Q 016921 299 TADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~ 319 (380)
.++|.++|+++||+++++...
T Consensus 302 ~~e~~~ll~~aGf~~~~~~~~ 322 (334)
T 2ip2_A 302 TEEVVDLLGRGGFAVERIVDL 322 (334)
T ss_dssp HHHHHHHHHHTTEEEEEEEEE
T ss_pred HHHHHHHHHHCCCceeEEEEC
Confidence 999999999999999988754
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3e-18 Score=149.11 Aligned_cols=142 Identities=17% Similarity=0.210 Sum_probs=113.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+ +|||||||+|.++..+++. +.+|+|+|+|+.+++.++++....+. ++.++++|+.++++++++||+|++.. .|
T Consensus 31 ~-~vLdiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~fD~v~~~~--~~ 104 (202)
T 2kw5_A 31 G-KILCLAEGEGRNACFLASL-GYEVTAVDQSSVGLAKAKQLAQEKGV--KITTVQSNLADFDIVADAWEGIVSIF--CH 104 (202)
T ss_dssp S-EEEECCCSCTHHHHHHHTT-TCEEEEECSSHHHHHHHHHHHHHHTC--CEEEECCBTTTBSCCTTTCSEEEEEC--CC
T ss_pred C-CEEEECCCCCHhHHHHHhC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEEcChhhcCCCcCCccEEEEEh--hc
Confidence 6 9999999999999999986 88999999999999999999887764 79999999999888889999999854 34
Q ss_pred C--CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 M--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+ .+...+++++.++|||||.+++.++....... . .........+++.+++.++|+ ||+++..
T Consensus 105 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-----~---------~~~~~~~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 105 LPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQY-----N---------TGGPKDLDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp CCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGG-----T---------SCCSSSGGGCCCHHHHHHHCS--SSCEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccC-----C---------CCCCCcceeecCHHHHHHHhc--CceEEEE
Confidence 4 46789999999999999999999865432110 0 000001112578999999999 9999988
Q ss_pred EecCCC
Q 016921 317 EDWSQN 322 (380)
Q Consensus 317 ~~~~~~ 322 (380)
+.....
T Consensus 169 ~~~~~~ 174 (202)
T 2kw5_A 169 NNLERN 174 (202)
T ss_dssp EEEEEE
T ss_pred EEEEee
Confidence 766544
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.76 E-value=9e-18 Score=149.76 Aligned_cols=100 Identities=21% Similarity=0.349 Sum_probs=87.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe-ccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS-MESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~-~~~l~ 237 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++. +++.++++|+.++++ +++||+|+| ..+++
T Consensus 41 ~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~s~~~~~~a~~~~------~~~~~~~~d~~~~~~-~~~~D~v~~~~~~~~ 112 (239)
T 3bxo_A 41 ASSLLDVACGTGTHLEHFTKE-FGDTAGLELSEDMLTHARKRL------PDATLHQGDMRDFRL-GRKFSAVVSMFSSVG 112 (239)
T ss_dssp CCEEEEETCTTSHHHHHHHHH-HSEEEEEESCHHHHHHHHHHC------TTCEEEECCTTTCCC-SSCEEEEEECTTGGG
T ss_pred CCeEEEecccCCHHHHHHHHh-CCcEEEEeCCHHHHHHHHHhC------CCCEEEECCHHHccc-CCCCcEEEEcCchHh
Confidence 789999999999999999987 459999999999999998864 469999999999876 689999995 45999
Q ss_pred CCC---CHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 238 HMP---DKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
|+. +...+++++.++|||||.+++.++..
T Consensus 113 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (239)
T 3bxo_A 113 YLKTTEELGAAVASFAEHLEPGGVVVVEPWWF 144 (239)
T ss_dssp GCCSHHHHHHHHHHHHHTEEEEEEEEECCCCC
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 995 45789999999999999999987654
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.2e-18 Score=150.79 Aligned_cols=100 Identities=24% Similarity=0.350 Sum_probs=89.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc-ccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME-SGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~-~l~ 237 (380)
+.+|||||||+|.++..+++. .+|+|+|+|+.+++.|+++....+ .++.++++|+.+++++ ++||+|++.. +++
T Consensus 34 ~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~-~~fD~v~~~~~~~~ 108 (243)
T 3d2l_A 34 GKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN--RHVDFWVQDMRELELP-EPVDAITILCDSLN 108 (243)
T ss_dssp TCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCGGGCCCS-SCEEEEEECTTGGG
T ss_pred CCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC--CceEEEEcChhhcCCC-CCcCEEEEeCCchh
Confidence 689999999999999999886 799999999999999999987765 4799999999988765 8899999986 999
Q ss_pred CCC---CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMP---DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+. +...+++++.++|||||.+++..
T Consensus 109 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 137 (243)
T 3d2l_A 109 YLQTEADVKQTFDSAARLLTDGGKLLFDV 137 (243)
T ss_dssp GCCSHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 983 45789999999999999999854
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=158.20 Aligned_cols=164 Identities=18% Similarity=0.201 Sum_probs=124.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..++..+.+. ++.+|||||||+|.++..+++.. +.+++++|+ +.+++.|++++...++.++++++.+|+.+ +
T Consensus 173 ~~l~~~~~~~-----~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~ 245 (360)
T 1tw3_A 173 DAPAAAYDWT-----NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-P 245 (360)
T ss_dssp HHHHHHSCCT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHHhCCCc-----cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-C
Confidence 3445555544 37899999999999999999987 679999999 99999999999888887799999999876 3
Q ss_pred CCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEecc-CCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWC-HRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
++. .||+|++..+++|+++. ..+++++.++|||||++++.++. .+... ...+.... +....... + ...++
T Consensus 246 ~~~-~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~-~~~~~~~~--~-~~~~t 318 (360)
T 1tw3_A 246 LPR-KADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS--FNEQFTEL-DLRMLVFL--G-GALRT 318 (360)
T ss_dssp CSS-CEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGC--CSHHHHHH-HHHHHHHH--S-CCCCB
T ss_pred CCC-CccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCC--Ccchhhhc-cHHHhhhc--C-CcCCC
Confidence 443 49999999999999876 48999999999999999999875 32211 00111111 11100111 1 23478
Q ss_pred HHHHHHHHHhCCCcEEEEEecC
Q 016921 299 TADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
.+++.++|+++||+++++....
T Consensus 319 ~~e~~~ll~~aGf~~~~~~~~~ 340 (360)
T 1tw3_A 319 REKWDGLAASAGLVVEEVRQLP 340 (360)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEeCC
Confidence 9999999999999999887654
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.9e-18 Score=154.75 Aligned_cols=105 Identities=25% Similarity=0.304 Sum_probs=93.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC---CCeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA---DKVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~---~~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+.. .++.+..+|+..++ +++++||+|++
T Consensus 58 ~~~vLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~ 136 (293)
T 3thr_A 58 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 136 (293)
T ss_dssp CCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEEE
Confidence 789999999999999999987 789999999999999999887443321 36889999998877 77899999999
Q ss_pred c-cccCCCCC-------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. .+++|+++ +..++++++++|||||++++...
T Consensus 137 ~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 176 (293)
T 3thr_A 137 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 176 (293)
T ss_dssp CTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 8 89999999 89999999999999999999864
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.7e-19 Score=154.40 Aligned_cols=156 Identities=21% Similarity=0.242 Sum_probs=116.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..++...+.+|+|+|+|+.+++.+++++...+ .++.++++|+.++++++++||+|++..+++
T Consensus 23 ~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 23 LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENN--FKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHHT--CCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 378999999999998544444458899999999999999999987765 478999999999988889999999999999
Q ss_pred CC--CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc-ccchHHHHHHHHHhhcc-CCCCCCCHHHHHHHHHhCCCcE
Q 016921 238 HM--PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE-SLQPWEQELLKKICDAY-YLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 238 ~~--~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
|+ .+...+++++.++|||||.+++.++.......... .+... .+....... ....+++.+++.++++++||..
T Consensus 101 ~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~ 177 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKPGGLACINFLTTKDERYNKGEKIGEG---EFLQLERGEKVIHSYVSLEEADKYFKDMKVLF 177 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEETTSTTTTCSEEEETT---EEEECC-CCCEEEEEECHHHHHHTTTTSEEEE
T ss_pred hCCHHHHHHHHHHHHHHcCCCcEEEEEEecccchhccchhhhccc---cceeccCCCceeEEecCHHHHHHHHhhcCcee
Confidence 99 57789999999999999999999876543221100 00000 000000000 0113578999999999999987
Q ss_pred EEEEe
Q 016921 314 IKAED 318 (380)
Q Consensus 314 v~~~~ 318 (380)
.+...
T Consensus 178 ~~~~~ 182 (209)
T 2p8j_A 178 KEDRV 182 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.75 E-value=9.4e-18 Score=150.50 Aligned_cols=154 Identities=13% Similarity=0.162 Sum_probs=115.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-----CCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-----GQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-----~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++.++++|+.+++... ..||+|++
T Consensus 56 ~~~~vLD~GcG~G~~~~~la~~-~~~v~gvD~s~~~~~~a~~~~~----~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~ 130 (245)
T 3ggd_A 56 PELPLIDFACGNGTQTKFLSQF-FPRVIGLDVSKSALEIAAKENT----AANISYRLLDGLVPEQAAQIHSEIGDANIYM 130 (245)
T ss_dssp TTSCEEEETCTTSHHHHHHHHH-SSCEEEEESCHHHHHHHHHHSC----CTTEEEEECCTTCHHHHHHHHHHHCSCEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHHh-CCCEEEEECCHHHHHHHHHhCc----ccCceEEECcccccccccccccccCccEEEE
Confidence 4789999999999999999997 5699999999999999998762 247999999998864321 34999999
Q ss_pred ccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH------HHHHHHhhccCCCCCCCHHHHHH
Q 016921 233 MESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ------ELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 233 ~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
..+++|++ +...+++++.++|||||++++.++..... ..+..... ..+.........+..++.+++.+
T Consensus 131 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (245)
T 3ggd_A 131 RTGFHHIPVEKRELLGQSLRILLGKQGAMYLIELGTGCI----DFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIEL 206 (245)
T ss_dssp ESSSTTSCGGGHHHHHHHHHHHHTTTCEEEEEEECTTHH----HHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHH
T ss_pred cchhhcCCHHHHHHHHHHHHHHcCCCCEEEEEeCCcccc----HHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHH
Confidence 99999998 78999999999999999999998753221 00000000 00111222222334578999999
Q ss_pred HHHhCCCcEEEEEecCCC
Q 016921 305 LLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~~~ 322 (380)
++ +||+++........
T Consensus 207 ~~--aGf~~~~~~~~~~~ 222 (245)
T 3ggd_A 207 YF--PDFEILSQGEGLFQ 222 (245)
T ss_dssp HC--TTEEEEEEECCBCC
T ss_pred Hh--CCCEEEeccccccc
Confidence 99 99999988766544
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.8e-19 Score=158.30 Aligned_cols=104 Identities=20% Similarity=0.166 Sum_probs=89.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEe---
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS--- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~--- 232 (380)
++.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++....+ .++.++.+|+... ++++++||.|+.
T Consensus 60 ~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCC--CceEEEeehHHhhcccccccCCceEEEeee
Confidence 489999999999999999988656789999999999999999887665 4688999998764 467889999974
Q ss_pred --ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 --MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 --~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...++|+.++..++++++|+|||||+|++.+
T Consensus 138 ~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence 5667788899999999999999999998754
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-16 Score=138.74 Aligned_cols=136 Identities=13% Similarity=0.044 Sum_probs=111.3
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..++..+.+.+ +.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++ ++++++.+|+.+..
T Consensus 30 ~~~l~~l~~~~-----~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~ 103 (204)
T 3e05_A 30 AVTLSKLRLQD-----DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVA-RNVTLVEAFAPEGL 103 (204)
T ss_dssp HHHHHHTTCCT-----TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTC-TTEEEEECCTTTTC
T ss_pred HHHHHHcCCCC-----CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CcEEEEeCChhhhh
Confidence 44555555544 8999999999999999999985 48999999999999999999988887 68999999997654
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
...++||+|++..+++ +...+++++.++|||||++++..... .+.++
T Consensus 104 ~~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~~------------------------------~~~~~ 150 (204)
T 3e05_A 104 DDLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVTL------------------------------DTLTK 150 (204)
T ss_dssp TTSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECBH------------------------------HHHHH
T ss_pred hcCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEeccc------------------------------ccHHH
Confidence 3347899999987765 78899999999999999999976321 12467
Q ss_pred HHHHHHhCCCcEEEEEe
Q 016921 302 YVKLLQSLSLEDIKAED 318 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~ 318 (380)
+.++++++|| .++...
T Consensus 151 ~~~~l~~~g~-~~~~~~ 166 (204)
T 3e05_A 151 AVEFLEDHGY-MVEVAC 166 (204)
T ss_dssp HHHHHHHTTC-EEEEEE
T ss_pred HHHHHHHCCC-ceeEEE
Confidence 8889999999 555443
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-18 Score=156.30 Aligned_cols=164 Identities=13% Similarity=0.092 Sum_probs=111.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----CeEEEEcCCC------CC--CCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-----KVSFQVGDAL------QQ--PFPD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-----~v~~~~~d~~------~~--~~~~ 224 (380)
++.+|||||||+|..+..++...+.+|+|+|+|+.|++.|+++....+... ++.|.+.|+. ++ ++++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 478999999999987766665445799999999999999999987655321 2678888873 22 3467
Q ss_pred CCccEEEeccccCCC---CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCC----------c----cccchHH---HHHH
Q 016921 225 GQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPS----------E----ESLQPWE---QELL 284 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~---~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~----------~----~~~~~~~---~~~~ 284 (380)
++||+|+|..+++|+ .+...++++++++|||||++++........... . ..+.... .+.+
T Consensus 128 ~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~LkpGG~~i~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 207 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSFHPRHYATVMNNLSELTASGGKVLITTMDGDKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRI 207 (302)
T ss_dssp SCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEEEEEEEEEEECHHHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEE
T ss_pred CCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHhcCCcccccccccccceeeecccccccc
Confidence 899999999999875 456899999999999999999987532111000 0 0000000 0000
Q ss_pred HHHhh---ccCCC-CCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 285 KKICD---AYYLP-AWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 285 ~~~~~---~~~~~-~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
..... ....+ .+.+++++.++++++||+++....+..
T Consensus 208 ~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~f~~ 248 (302)
T 2vdw_A 208 VVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVDFAT 248 (302)
T ss_dssp EEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEEHHH
T ss_pred ceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecChHH
Confidence 00000 00111 246789999999999999999876654
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8e-17 Score=153.30 Aligned_cols=151 Identities=17% Similarity=0.181 Sum_probs=112.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ .++++|+.+|+.+ +++.+ |+|++..++
T Consensus 203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~d~~~-~~p~~--D~v~~~~vl 271 (368)
T 3reo_A 203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA-------FSGVEHLGGDMFD-GVPKG--DAIFIKWIC 271 (368)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTTT-CCCCC--SEEEEESCG
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh-------cCCCEEEecCCCC-CCCCC--CEEEEechh
Confidence 47899999999999999999987 789999999 888877653 1579999999987 66654 999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCcE
Q 016921 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
||+++. .+++++++++|||||+|++.++..+...... ........+...... ......++.++|.++|+++||++
T Consensus 272 h~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~~~~~~~~g~~rt~~e~~~ll~~AGF~~ 349 (368)
T 3reo_A 272 HDWSDEHCLKLLKNCYAALPDHGKVIVAEYILPPSPDPS--IATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRG 349 (368)
T ss_dssp GGBCHHHHHHHHHHHHHHSCTTCEEEEEECCCCSSCCCC--HHHHHHHHHHHHHHHHSSBCCCCCHHHHHHHHHHTTCCE
T ss_pred hcCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCc--hhhhHHHhhhHHHHhhcCCCccCCHHHHHHHHHHCCCee
Confidence 999775 4789999999999999999997654322111 011111111111111 11122468999999999999999
Q ss_pred EEEEecCC
Q 016921 314 IKAEDWSQ 321 (380)
Q Consensus 314 v~~~~~~~ 321 (380)
+++.....
T Consensus 350 v~~~~~~~ 357 (368)
T 3reo_A 350 FKVASCAF 357 (368)
T ss_dssp EEEEEEET
T ss_pred eEEEEeCC
Confidence 99876543
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-16 Score=151.92 Aligned_cols=163 Identities=15% Similarity=0.138 Sum_probs=119.0
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
....++..+. .. +..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ .++++|+.+|+.
T Consensus 188 ~~~~~~~~~~~~~-----~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~-------~~~v~~~~~D~~ 254 (364)
T 3p9c_A 188 ITKKLLELYHGFE-----GLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ-------FPGVTHVGGDMF 254 (364)
T ss_dssp HHHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC-------CTTEEEEECCTT
T ss_pred HHHHHHHhccccc-----CCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh-------cCCeEEEeCCcC
Confidence 3455666554 33 37899999999999999999987 789999999 888876653 158999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhh-ccCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD-AYYLPA 295 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 295 (380)
+ +++.+ |+|++..++|++++. .+++++++++|||||+|++.+...+...... ........+..... ......
T Consensus 255 ~-~~p~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~~~~~~--~~~~~~~~~d~~m~~~~~~g~ 329 (364)
T 3p9c_A 255 K-EVPSG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKVVLVQCILPVNPEAN--PSSQGVFHVDMIMLAHNPGGR 329 (364)
T ss_dssp T-CCCCC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEEEEEECCBCSSCCSS--HHHHHHHHHHHHHHHHCSSCC
T ss_pred C-CCCCC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCcc--hhhhhHHHhHHHHHhcccCCc
Confidence 8 77654 999999999999764 5899999999999999999997654422111 01101011111111 111123
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 296 WCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
.++.++|.++|+++||+++++.....
T Consensus 330 ~rt~~e~~~ll~~AGF~~v~~~~~~~ 355 (364)
T 3p9c_A 330 ERYEREFQALARGAGFTGVKSTYIYA 355 (364)
T ss_dssp CCBHHHHHHHHHHTTCCEEEEEEEET
T ss_pred cCCHHHHHHHHHHCCCceEEEEEcCC
Confidence 46899999999999999999876543
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.74 E-value=7.6e-17 Score=147.10 Aligned_cols=160 Identities=10% Similarity=0.104 Sum_probs=115.6
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCc---ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGI---GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt---G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
+.++..++..+.... ...+|||||||+ |.++..+++.. +.+|+++|+|+.|++.|++++.. .+++.+++
T Consensus 62 ~~~~~~~~~~l~~~~----~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~---~~~v~~~~ 134 (274)
T 2qe6_A 62 RKVLVRGVRFLAGEA----GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK---DPNTAVFT 134 (274)
T ss_dssp HHHHHHHHHHHHTTT----CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT---CTTEEEEE
T ss_pred hHHHHHHHHHHhhcc----CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC---CCCeEEEE
Confidence 445555555443111 257999999999 98887776655 68999999999999999998843 25799999
Q ss_pred cCCCCCC-----------CCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHH
Q 016921 215 GDALQQP-----------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281 (380)
Q Consensus 215 ~d~~~~~-----------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~ 281 (380)
+|+.+.+ ++.++||+|++..++||+++ +..++++++++|||||+|++.++.... + ..... ..
T Consensus 135 ~D~~~~~~~~~~~~~~~~~d~~~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~pGG~l~i~~~~~~~--~--~~~~~-~~ 209 (274)
T 2qe6_A 135 ADVRDPEYILNHPDVRRMIDFSRPAAIMLVGMLHYLSPDVVDRVVGAYRDALAPGSYLFMTSLVDTG--L--PAQQK-LA 209 (274)
T ss_dssp CCTTCHHHHHHSHHHHHHCCTTSCCEEEETTTGGGSCTTTHHHHHHHHHHHSCTTCEEEEEEEBCSS--C--HHHHH-HH
T ss_pred eeCCCchhhhccchhhccCCCCCCEEEEEechhhhCCcHHHHHHHHHHHHhCCCCcEEEEEEecCcc--h--HHHHH-HH
Confidence 9997631 33358999999999999987 899999999999999999999976422 1 11111 11
Q ss_pred HHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
..+..... . ..+++.+++.++| .||++++
T Consensus 210 ~~~~~~~~--~-~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 210 RITRENLG--E-GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp HHHHHHHS--C-CCCBCHHHHHHTT--TTCEECT
T ss_pred HHHHhcCC--C-CccCCHHHHHHHh--CCCeEcc
Confidence 11221111 1 1357999999999 5998764
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=9.7e-18 Score=151.95 Aligned_cols=149 Identities=11% Similarity=0.027 Sum_probs=114.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCC----------------------------CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL----------------------------AD 208 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~----------------------------~~ 208 (380)
++.+|||||||+|.++..++.. +. +|+|+|+|+.+++.+++++...+. ..
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 134 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACE-SFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR 134 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred CCCEEEEECCCccHHHHHHhhc-ccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence 4789999999999999998876 55 999999999999999988754320 01
Q ss_pred Ce-EEEEcCCCCCC-CCC---CCccEEEeccccC----CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchH
Q 016921 209 KV-SFQVGDALQQP-FPD---GQFDLVWSMESGE----HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW 279 (380)
Q Consensus 209 ~v-~~~~~d~~~~~-~~~---~~fD~V~~~~~l~----~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~ 279 (380)
++ .++++|+.+.+ +++ ++||+|++..+++ ++.++..+++++.++|||||+|++.+...... +..
T Consensus 135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~------~~~- 207 (265)
T 2i62_A 135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSY------YMI- 207 (265)
T ss_dssp HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCE------EEE-
T ss_pred hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCce------EEc-
Confidence 27 89999998864 345 8999999999999 55678899999999999999999988432210 000
Q ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCC
Q 016921 280 EQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
.........++.+++.++|+++||+++++......
T Consensus 208 --------~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~ 242 (265)
T 2i62_A 208 --------GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQN 242 (265)
T ss_dssp --------TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCC
T ss_pred --------CCccccccccCHHHHHHHHHHCCCEEEEEEEeccc
Confidence 01000112468899999999999999998876543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-16 Score=139.70 Aligned_cols=133 Identities=16% Similarity=0.086 Sum_probs=109.0
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP 223 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~ 223 (380)
.++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++++..+++.+++++++|+.+....
T Consensus 46 ~~l~~l~~~~-----~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~ 119 (204)
T 3njr_A 46 LTLAALAPRR-----GELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD 119 (204)
T ss_dssp HHHHHHCCCT-----TCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred HHHHhcCCCC-----CCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence 3455555544 889999999999999999998 8999999999999999999999888876899999999884323
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHH
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYV 303 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (380)
..+||+|++..++ +.. +++++.++|||||++++..... .+..++.
T Consensus 120 ~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~~------------------------------~~~~~~~ 164 (204)
T 3njr_A 120 LPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVTL------------------------------ESETLLT 164 (204)
T ss_dssp SCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECSH------------------------------HHHHHHH
T ss_pred CCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecCc------------------------------ccHHHHH
Confidence 4679999987644 566 9999999999999999976321 1245777
Q ss_pred HHHHhCCCcEEEEE
Q 016921 304 KLLQSLSLEDIKAE 317 (380)
Q Consensus 304 ~ll~~aGf~~v~~~ 317 (380)
+++++.|++++.+.
T Consensus 165 ~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 165 QLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHCSEEEEEE
T ss_pred HHHHhCCCcEEEEE
Confidence 88999999887764
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=149.07 Aligned_cols=146 Identities=15% Similarity=0.201 Sum_probs=106.1
Q ss_pred CCEEEEECCCc--ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CC--CCCcc
Q 016921 159 PKNVVDVGCGI--GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FP--DGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGt--G~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~--~~~fD 228 (380)
..+|||||||+ +.++..++++. +++|+++|+|+.|++.|++++...+ ..++.|+++|+.+++ .+ .+.||
T Consensus 79 ~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~-~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 79 IRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTP-EGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCS-SSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCC-CCcEEEEEecccChhhhhcccccccccC
Confidence 46899999997 55666666654 7899999999999999999885432 247999999998852 01 24565
Q ss_pred -----EEEeccccCCCCC---HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-CCCCH
Q 016921 229 -----LVWSMESGEHMPD---KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP-AWCST 299 (380)
Q Consensus 229 -----~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 299 (380)
.|+++.+|||+++ +..+++++.+.|+|||+|++.++..+.. +.....+...+.....+ .+++.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~--------p~~~~~~~~~~~~~g~p~~~rs~ 229 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFA--------PQEVGRVAREYAARNMPMRLRTH 229 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTS--------HHHHHHHHHHHHHTTCCCCCCCH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCC--------HHHHHHHHHHHHhcCCCCccCCH
Confidence 5888999999987 5789999999999999999998754311 11111222222222222 35799
Q ss_pred HHHHHHHHhCCCcEEE
Q 016921 300 ADYVKLLQSLSLEDIK 315 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~ 315 (380)
+++..+|. ||+.++
T Consensus 230 ~ei~~~f~--Glelve 243 (277)
T 3giw_A 230 AEAEEFFE--GLELVE 243 (277)
T ss_dssp HHHHHTTT--TSEECT
T ss_pred HHHHHHhC--CCcccC
Confidence 99999995 999664
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.2e-17 Score=140.41 Aligned_cols=126 Identities=23% Similarity=0.368 Sum_probs=108.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec-ccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l 236 (380)
++.+|||||||+|.++..+++. +.+++|+|+++.+++.++++. .++.++++|+.++++++++||+|++. .++
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~-~~~v~~~D~~~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~ 118 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQ-GHDVLGTDLDPILIDYAKQDF------PEARWVVGDLSVDQISETDFDLIVSAGNVM 118 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHC------TTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred CCCeEEEECCCCCHHHHHHHHC-CCcEEEEcCCHHHHHHHHHhC------CCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence 3789999999999999999987 889999999999999998865 36899999999988878899999998 688
Q ss_pred CCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+|+. +...+++++.++|+|||.+++...... .++.+++.++++++||+++
T Consensus 119 ~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~ 170 (195)
T 3cgg_A 119 GFLAEDGREPALANIHRALGADGRAVIGFGAGR----------------------------GWVFGDFLEVAERVGLELE 170 (195)
T ss_dssp GGSCHHHHHHHHHHHHHHEEEEEEEEEEEETTS----------------------------SCCHHHHHHHHHHHTEEEE
T ss_pred hhcChHHHHHHHHHHHHHhCCCCEEEEEeCCCC----------------------------CcCHHHHHHHHHHcCCEEe
Confidence 8884 458899999999999999999763210 1468899999999999988
Q ss_pred EEEe
Q 016921 315 KAED 318 (380)
Q Consensus 315 ~~~~ 318 (380)
+...
T Consensus 171 ~~~~ 174 (195)
T 3cgg_A 171 NAFE 174 (195)
T ss_dssp EEES
T ss_pred eeec
Confidence 7653
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=145.38 Aligned_cols=102 Identities=22% Similarity=0.305 Sum_probs=92.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.... +++.++++|+.+++ ++++||+|++..+++
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~~~~~---~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~ 125 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPH-CKRLTVIDVMPRAIGRACQRTKRW---SHISWAATDILQFS-TAELFDLIVVAEVLY 125 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGG-EEEEEEEESCHHHHHHHHHHTTTC---SSEEEEECCTTTCC-CSCCEEEEEEESCGG
T ss_pred CCCcEEEEcCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcccC---CCeEEEEcchhhCC-CCCCccEEEEccHHH
Confidence 4789999999999999999987 679999999999999999887543 37999999999987 678999999999999
Q ss_pred CCCCH---HHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDK---SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~---~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|++++ ..+++++.++|||||.+++.+.
T Consensus 126 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 155 (216)
T 3ofk_A 126 YLEDMTQMRTAIDNMVKMLAPGGHLVFGSA 155 (216)
T ss_dssp GSSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred hCCCHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 99987 5679999999999999999874
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=2.3e-16 Score=149.31 Aligned_cols=154 Identities=18% Similarity=0.240 Sum_probs=116.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+..+|||||||+|.++..+++++ +.++++.|+ |.+++.|++.....+ .++|+|+.+|+.+.+.+ .+|+|++..+|
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~-~~rv~~~~gD~~~~~~~--~~D~~~~~~vl 254 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQE-EEQIDFQEGDFFKDPLP--EADLYILARVL 254 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---CCSEEEEESCTTTSCCC--CCSEEEEESSG
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcc-cCceeeecCccccCCCC--CceEEEeeeec
Confidence 37899999999999999999998 788999998 889999988775444 57999999999876544 57999999999
Q ss_pred CCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 237 EHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 237 ~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
|+++|. .++|+++++.|+|||+++|.+...+..... .......+. .-.....+ .-+|.++|.++|+++||+++
T Consensus 255 h~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~--~~~~~~~dl-~ml~~~~g--~ert~~e~~~ll~~AGf~~v 329 (353)
T 4a6d_A 255 HDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRG--PLLTQLYSL-NMLVQTEG--QERTPTHYHMLLSSAGFRDF 329 (353)
T ss_dssp GGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCC--CHHHHHHHH-HHHHSSSC--CCCCHHHHHHHHHHHTCEEE
T ss_pred ccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCC--CHHHHHHHH-HHHHhCCC--cCCCHHHHHHHHHHCCCceE
Confidence 999876 578999999999999999999765432211 111111111 11111112 23689999999999999999
Q ss_pred EEEecC
Q 016921 315 KAEDWS 320 (380)
Q Consensus 315 ~~~~~~ 320 (380)
++....
T Consensus 330 ~v~~~~ 335 (353)
T 4a6d_A 330 QFKKTG 335 (353)
T ss_dssp EEECCS
T ss_pred EEEEcC
Confidence 987654
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-17 Score=145.89 Aligned_cols=113 Identities=19% Similarity=0.255 Sum_probs=97.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+ +.+|+|+|+|+. ++.+.++|+.++++++++||+|++..+++
T Consensus 67 ~~~~vLDiG~G~G~~~~~l----~~~v~~~D~s~~----------------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 67 ASLVVADFGCGDCRLASSI----RNPVHCFDLASL----------------DPRVTVCDMAQVPLEDESVDVAVFCLSLM 126 (215)
T ss_dssp TTSCEEEETCTTCHHHHHC----CSCEEEEESSCS----------------STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred CCCeEEEECCcCCHHHHHh----hccEEEEeCCCC----------------CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence 3789999999999998876 468999999986 46789999999888889999999999996
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+ .++..+++++.++|+|||.+++.++... +.+.+++.++|+++||+++...
T Consensus 127 ~-~~~~~~l~~~~~~L~~gG~l~i~~~~~~----------------------------~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 127 G-TNIRDFLEEANRVLKPGGLLKVAEVSSR----------------------------FEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp S-SCHHHHHHHHHHHEEEEEEEEEEECGGG----------------------------CSCHHHHHHHHHHTTEEEEEEE
T ss_pred c-cCHHHHHHHHHHhCCCCeEEEEEEcCCC----------------------------CCCHHHHHHHHHHCCCEEEEEe
Confidence 5 8999999999999999999999874310 1368999999999999998865
Q ss_pred ec
Q 016921 318 DW 319 (380)
Q Consensus 318 ~~ 319 (380)
..
T Consensus 178 ~~ 179 (215)
T 2zfu_A 178 LT 179 (215)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-18 Score=151.60 Aligned_cols=105 Identities=19% Similarity=0.135 Sum_probs=87.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEe-cc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWS-ME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~-~~ 234 (380)
++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .++.++++|+.++ ++++++||+|++ .+
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~ 137 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC--CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence 378999999999999999977534589999999999999999886655 5799999999987 788899999999 55
Q ss_pred cc----CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SG----EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l----~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+ .|..+...++++++++|||||+|++.++
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 171 (236)
T 1zx0_A 138 PLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNL 171 (236)
T ss_dssp CCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECCH
T ss_pred ccchhhhhhhhHHHHHHHHHHhcCCCeEEEEEec
Confidence 43 1222345789999999999999998764
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.4e-17 Score=136.75 Aligned_cols=137 Identities=10% Similarity=0.007 Sum_probs=108.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+...++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+++.++ ++.+|+.+
T Consensus 13 ~~~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~ 86 (178)
T 3hm2_A 13 VRALAISALAPKP-----HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPR 86 (178)
T ss_dssp HHHHHHHHHCCCT-----TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTG
T ss_pred HHHHHHHHhcccC-----CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHh
Confidence 3344555555543 8899999999999999999986 689999999999999999999888887688 88888754
Q ss_pred -CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 220 -QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 220 -~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
++..+++||+|++..+++| ..+++++.++|||||++++.+... .+
T Consensus 87 ~~~~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~ 132 (178)
T 3hm2_A 87 AFDDVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVTV------------------------------ES 132 (178)
T ss_dssp GGGGCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECSH------------------------------HH
T ss_pred hhhccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeecc------------------------------cc
Confidence 3322389999999999887 678999999999999999987421 12
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 016921 299 TADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~ 317 (380)
...+..++++.|++...+.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~ 151 (178)
T 3hm2_A 133 EQMLWALRKQFGGTISSFA 151 (178)
T ss_dssp HHHHHHHHHHHCCEEEEEE
T ss_pred HHHHHHHHHHcCCeeEEEE
Confidence 3566778888888876653
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.6e-17 Score=153.75 Aligned_cols=161 Identities=19% Similarity=0.205 Sum_probs=117.9
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..++..+. +. ++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ . ++++++.+|+.
T Consensus 196 ~~~~l~~~~~~~~-----~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~ 262 (372)
T 1fp1_D 196 EMKRMLEIYTGFE-----GISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------L-SGIEHVGGDMF 262 (372)
T ss_dssp HHHHHHHHCCTTT-----TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------C-TTEEEEECCTT
T ss_pred HHHHHHHHhhccC-----CCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------c-CCCEEEeCCcc
Confidence 3455666653 33 37899999999999999999987 678999999 999887654 2 46999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHH--HHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (380)
+ +++. ||+|++..++||+++.. .++++++++|||||++++.++..+.... ..........+............
T Consensus 263 ~-~~~~--~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~--~~~~~~~~~~~d~~~~~~~~~~~ 337 (372)
T 1fp1_D 263 A-SVPQ--GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPN--TSEESKLVSTLDNLMFITVGGRE 337 (372)
T ss_dssp T-CCCC--EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCC--SSHHHHHHHHHHHHHHHHHSCCC
T ss_pred c-CCCC--CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCc--cchHHHHHHHhhHHHHhccCCcc
Confidence 7 6654 99999999999999887 9999999999999999999876543221 11100001111110000000123
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 016921 297 CSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 297 ~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
++.++|.++|+++||+++++...
T Consensus 338 ~t~~e~~~ll~~aGf~~~~~~~~ 360 (372)
T 1fp1_D 338 RTEKQYEKLSKLSGFSKFQVACR 360 (372)
T ss_dssp EEHHHHHHHHHHTTCSEEEEEEE
T ss_pred CCHHHHHHHHHHCCCceEEEEEc
Confidence 68999999999999999988763
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.72 E-value=7.8e-17 Score=147.96 Aligned_cols=138 Identities=17% Similarity=0.204 Sum_probs=112.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.+++++...++ ++.++++|+.++++ +++||+|++..+++|
T Consensus 121 ~~~vLD~GcG~G~~~~~l~~~-g~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 121 PCKVLDLGCGQGRNSLYLSLL-GYDVTSWDHNENSIAFLNETKEKENL--NISTALYDINAANI-QENYDFIVSTVVFMF 196 (286)
T ss_dssp SCEEEEESCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CEEEEECCGGGCCC-CSCEEEEEECSSGGG
T ss_pred CCcEEEECCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHHcCC--ceEEEEeccccccc-cCCccEEEEccchhh
Confidence 789999999999999999987 88999999999999999999988876 79999999999876 789999999999999
Q ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+++ ...+++++.++|||||.+++.........+.. ......++.+++.++++ +|+++..
T Consensus 197 ~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~-----------------~~~~~~~~~~~l~~~~~--~~~~~~~ 257 (286)
T 3m70_A 197 LNRERVPSIIKNMKEHTNVGGYNLIVAAMSTDDVPCP-----------------LPFSFTFAENELKEYYK--DWEFLEY 257 (286)
T ss_dssp SCGGGHHHHHHHHHHTEEEEEEEEEEEEBCCSSSCCS-----------------SCCSCCBCTTHHHHHTT--TSEEEEE
T ss_pred CCHHHHHHHHHHHHHhcCCCcEEEEEEecCCCCCCCC-----------------CCccccCCHHHHHHHhc--CCEEEEE
Confidence 954 56999999999999999887664432211110 11112357788999886 4988877
Q ss_pred Eec
Q 016921 317 EDW 319 (380)
Q Consensus 317 ~~~ 319 (380)
.+.
T Consensus 258 ~~~ 260 (286)
T 3m70_A 258 NEN 260 (286)
T ss_dssp ECC
T ss_pred Ecc
Confidence 543
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.6e-17 Score=137.84 Aligned_cols=106 Identities=10% Similarity=0.109 Sum_probs=87.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecc-c
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME-S 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~-~ 235 (380)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ .++++++.+...++ +.+++||+|++.. .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~~~~~l~~~~~~~fD~v~~~~~~ 99 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGI-ENTELILDGHENLDHYVREPIRAAIFNLGY 99 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTC-CCEEEEESCGGGGGGTCCSCEEEEEEEEC-
T ss_pred CCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCcHHHHHhhccCCcCEEEEeCCC
Confidence 4889999999999999999998 89999999999999999999998887 68999998887753 4478899998763 2
Q ss_pred cCC-------C-CCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 236 GEH-------M-PDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 236 l~~-------~-~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+.+ . .+...+++++.++|||||.+++..+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 100 LPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp ----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred CCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 222 1 23457889999999999999998753
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.70 E-value=4e-16 Score=137.06 Aligned_cols=128 Identities=17% Similarity=0.128 Sum_probs=105.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .++.++++|+.+++ +++++||+|++...
T Consensus 42 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 42 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 7899999999999999999987 68999999999999999999988887 58999999999876 67789999999866
Q ss_pred cCCCC--------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016921 236 GEHMP--------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 236 l~~~~--------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (380)
..+.. ....+++++.++|||||.+++.... . . ..+.+.+.++
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~-------~--------~---------------~~~~~~~~~~ 170 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN-------R--------G---------------LFEYSLVSFS 170 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-------H--------H---------------HHHHHHHHHH
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-------H--------H---------------HHHHHHHHHH
Confidence 54332 1257999999999999999986521 0 0 0245667888
Q ss_pred hCCCcEEEEE
Q 016921 308 SLSLEDIKAE 317 (380)
Q Consensus 308 ~aGf~~v~~~ 317 (380)
++||..+.+.
T Consensus 171 ~~g~~~~~~~ 180 (214)
T 1yzh_A 171 QYGMKLNGVW 180 (214)
T ss_dssp HHTCEEEEEE
T ss_pred HCCCeeeecc
Confidence 8899887765
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.7e-16 Score=147.86 Aligned_cols=147 Identities=16% Similarity=0.245 Sum_probs=111.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ . ++++++.+|+.+ +++ .||+|++..++
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~p--~~D~v~~~~~l 256 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG------S-NNLTYVGGDMFT-SIP--NADAVLLKYIL 256 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------B-TTEEEEECCTTT-CCC--CCSEEEEESCG
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc------C-CCcEEEeccccC-CCC--CccEEEeehhh
Confidence 37899999999999999999987 789999999 999887764 1 359999999976 555 39999999999
Q ss_pred CCCCCHH--HHHHHHHHhcCC---CcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 016921 237 EHMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (380)
Q Consensus 237 ~~~~~~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 311 (380)
||+++.. .++++++++||| ||++++.++..+...... .. ......+........ ...++.++|.++|+++||
T Consensus 257 h~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~-~~-~~~~~~~d~~~~~~~-g~~~t~~e~~~ll~~aGf 333 (352)
T 1fp2_A 257 HNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDEN-QV-TQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGF 333 (352)
T ss_dssp GGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCH-HH-HHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTC
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCCCcc-ch-hhhHhhccHHHHhcc-CCCCCHHHHHHHHHHCCC
Confidence 9998877 999999999999 999999997654321110 00 011111111111111 234689999999999999
Q ss_pred cEEEEEe
Q 016921 312 EDIKAED 318 (380)
Q Consensus 312 ~~v~~~~ 318 (380)
+++++..
T Consensus 334 ~~~~~~~ 340 (352)
T 1fp2_A 334 QHYKISP 340 (352)
T ss_dssp CEEEEEE
T ss_pred CeeEEEe
Confidence 9998765
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=140.64 Aligned_cols=116 Identities=28% Similarity=0.404 Sum_probs=95.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
...+..++...... ++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|+++....+. ++.++++|+.
T Consensus 27 ~~~~~~~~~~~~~~-----~~~~vLDlGcG~G~~~~~l~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~ 98 (252)
T 1wzn_A 27 IDFVEEIFKEDAKR-----EVRRVLDLACGTGIPTLELAER-GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVL 98 (252)
T ss_dssp HHHHHHHHHHTCSS-----CCCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGG
T ss_pred HHHHHHHHHHhccc-----CCCEEEEeCCCCCHHHHHHHHC-CCeEEEEECCHHHHHHHHHHHHhcCC--ceEEEECChh
Confidence 34566666665443 3789999999999999999987 88999999999999999999887664 6999999999
Q ss_pred CCCCCCCCccEEEecc-ccCCCC--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSME-SGEHMP--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~-~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++++ ++||+|++.. .++++. +...+++++.++|||||.+++..
T Consensus 99 ~~~~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~~~ 145 (252)
T 1wzn_A 99 EIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDF 145 (252)
T ss_dssp GCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccC-CCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEEec
Confidence 88764 7899999874 444543 46789999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-16 Score=137.58 Aligned_cols=127 Identities=21% Similarity=0.173 Sum_probs=106.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.. +.+.++|+.+.+ +++||+|++...++
T Consensus 60 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-v~~~~~d~~~~~--~~~fD~i~~~~~~~ 136 (205)
T 3grz_A 60 KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYD-IALQKTSLLADV--DGKFDLIVANILAE 136 (205)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCC-CEEEESSTTTTC--CSCEEEEEEESCHH
T ss_pred CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-eEEEeccccccC--CCCceEEEECCcHH
Confidence 378999999999999999887534599999999999999999998888754 999999997753 58999999987765
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+ ...+++++.++|||||++++.++... +.+++.++++++||++++..
T Consensus 137 ~---~~~~l~~~~~~L~~gG~l~~~~~~~~------------------------------~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 137 I---LLDLIPQLDSHLNEDGQVIFSGIDYL------------------------------QLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp H---HHHHGGGSGGGEEEEEEEEEEEEEGG------------------------------GHHHHHHHHHHTTEEEEEEE
T ss_pred H---HHHHHHHHHHhcCCCCEEEEEecCcc------------------------------cHHHHHHHHHHcCCceEEee
Confidence 4 47889999999999999999764311 35788899999999998876
Q ss_pred ecC
Q 016921 318 DWS 320 (380)
Q Consensus 318 ~~~ 320 (380)
...
T Consensus 184 ~~~ 186 (205)
T 3grz_A 184 RAG 186 (205)
T ss_dssp EET
T ss_pred ccC
Confidence 543
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.3e-16 Score=141.43 Aligned_cols=119 Identities=18% Similarity=0.260 Sum_probs=100.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCC-CCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFP-DGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~-~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++ .++++++++|+ ..+|++ +++||+|++.
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~d~~~~~~~~~~~~fD~v~~~-- 118 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQ-AARWAAYDFSPELLKLARAN------APHADVYEWNGKGELPAGLGAPFGLIVSR-- 118 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHH------CTTSEEEECCSCSSCCTTCCCCEEEEEEE--
T ss_pred CCCeEEEeCCCCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHh------CCCceEEEcchhhccCCcCCCCEEEEEeC--
Confidence 3789999999999999999987 88999999999999999987 24799999999 567777 8899999987
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
.++..+++++.++|||||.++... ...+.+++.++++++||.++.
T Consensus 119 ----~~~~~~l~~~~~~LkpgG~l~~~~-------------------------------~~~~~~~~~~~l~~~Gf~~~~ 163 (226)
T 3m33_A 119 ----RGPTSVILRLPELAAPDAHFLYVG-------------------------------PRLNVPEVPERLAAVGWDIVA 163 (226)
T ss_dssp ----SCCSGGGGGHHHHEEEEEEEEEEE-------------------------------SSSCCTHHHHHHHHTTCEEEE
T ss_pred ----CCHHHHHHHHHHHcCCCcEEEEeC-------------------------------CcCCHHHHHHHHHHCCCeEEE
Confidence 466788999999999999999111 012456889999999999988
Q ss_pred EEecC
Q 016921 316 AEDWS 320 (380)
Q Consensus 316 ~~~~~ 320 (380)
+....
T Consensus 164 ~~~~~ 168 (226)
T 3m33_A 164 EDHVS 168 (226)
T ss_dssp EEEEE
T ss_pred EEeee
Confidence 76543
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=137.54 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=107.7
Q ss_pred CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCC
Q 016921 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDG 225 (380)
Q Consensus 151 ~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 225 (380)
+.....+|+.+|||+|||+|.++..+++.. ..+|+|+|+++.|++.+++++.+. +|+..+.+|.... +...+
T Consensus 70 l~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~---~ni~~V~~d~~~p~~~~~~~~ 146 (233)
T 4df3_A 70 LIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR---RNIFPILGDARFPEKYRHLVE 146 (233)
T ss_dssp CSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC---TTEEEEESCTTCGGGGTTTCC
T ss_pred hhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh---cCeeEEEEeccCccccccccc
Confidence 344455679999999999999999999986 468999999999999998877544 4799999988763 45568
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHH
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKL 305 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 305 (380)
++|+|++. +.|..+...++.++.++|||||++++....... ... .+.-....+..+.
T Consensus 147 ~vDvVf~d--~~~~~~~~~~l~~~~r~LKpGG~lvI~ik~r~~-------------d~~--------~p~~~~~~~ev~~ 203 (233)
T 4df3_A 147 GVDGLYAD--VAQPEQAAIVVRNARFFLRDGGYMLMAIKARSI-------------DVT--------TEPSEVYKREIKT 203 (233)
T ss_dssp CEEEEEEC--CCCTTHHHHHHHHHHHHEEEEEEEEEEEECCHH-------------HHH--------TCCCHHHHHHHHH
T ss_pred eEEEEEEe--ccCChhHHHHHHHHHHhccCCCEEEEEEecccC-------------CCC--------CChHHHHHHHHHH
Confidence 89999864 445567788999999999999999987521100 000 0000112344567
Q ss_pred HHhCCCcEEEEEecCC
Q 016921 306 LQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 306 l~~aGf~~v~~~~~~~ 321 (380)
|+++||++++..++..
T Consensus 204 L~~~GF~l~e~i~L~p 219 (233)
T 4df3_A 204 LMDGGLEIKDVVHLDP 219 (233)
T ss_dssp HHHTTCCEEEEEECTT
T ss_pred HHHCCCEEEEEEccCC
Confidence 8999999998877654
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.68 E-value=8.6e-17 Score=141.64 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=105.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHH----HHcCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALA----AARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~----~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.+.+.+ ...++ +++.++++|+.++++++++ |.|++
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~-~~v~~~~~d~~~l~~~~~~-d~v~~ 104 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGL-PNLLYLWATAERLPPLSGV-GELHV 104 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCC-TTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCC-CceEEEecchhhCCCCCCC-CEEEE
Confidence 38899999999999999999987 789999999999888643333 23344 4899999999999887666 77763
Q ss_pred cc---cc--CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016921 233 ME---SG--EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 233 ~~---~l--~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (380)
.. .+ +|++++..++++++++|||||.+++............ ..............+.+..+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~l~~~l~ 172 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWRPSVP------------EVGEHPEPTPDSADEWLAPRYA 172 (218)
T ss_dssp ESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBTTBCG------------GGTTCCCCCHHHHHHHHHHHHH
T ss_pred EccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccccccc------------ccccCCccchHHHHHHHHHHHH
Confidence 32 22 2667778999999999999999999542211111000 0000000000012345788999
Q ss_pred hCCCcEEEEEecCC
Q 016921 308 SLSLEDIKAEDWSQ 321 (380)
Q Consensus 308 ~aGf~~v~~~~~~~ 321 (380)
++||++++++.+..
T Consensus 173 ~aGf~i~~~~~~~~ 186 (218)
T 3mq2_A 173 EAGWKLADCRYLEP 186 (218)
T ss_dssp HTTEEEEEEEEECH
T ss_pred HcCCCceeeeccch
Confidence 99999999887664
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-16 Score=145.69 Aligned_cols=108 Identities=19% Similarity=0.170 Sum_probs=91.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC------CCCCeEEEEcCCCCCC----CC--CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG------LADKVSFQVGDALQQP----FP--DG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~------~~~~v~~~~~d~~~~~----~~--~~ 225 (380)
++.+|||||||+|.++..+++..+.+|+|+|+|+.+++.++++....+ ...++.++++|+.+++ ++ ++
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~ 113 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQM 113 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTTC
T ss_pred CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCCC
Confidence 378999999999999999987546799999999999999999886542 2247999999999875 53 45
Q ss_pred CccEEEeccccCCC-C---CHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 226 QFDLVWSMESGEHM-P---DKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 226 ~fD~V~~~~~l~~~-~---~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+||+|++..+++|+ . +...+++++.++|||||.+++..+.
T Consensus 114 ~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 157 (313)
T 3bgv_A 114 CFDICSCQFVCHYSFESYEQADMMLRNACERLSPGGYFIGTTPN 157 (313)
T ss_dssp CEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred CEEEEEEecchhhccCCHHHHHHHHHHHHHHhCCCcEEEEecCC
Confidence 89999999999987 3 3578999999999999999998763
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.1e-16 Score=138.00 Aligned_cols=135 Identities=16% Similarity=0.217 Sum_probs=102.9
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----CCCCCCCccEEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QPFPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~~~~~~fD~V~ 231 (380)
.++.+|||+|||+|.++..+++..+ .+|+|+|+|+.+++.+++++... .++.++.+|+.+ .+++ ++||+|+
T Consensus 73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~-~~~D~v~ 148 (230)
T 1fbn_A 73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIV-EKVDVIY 148 (230)
T ss_dssp CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTS-CCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC---CCeEEEECCCCCcccccccC-ccEEEEE
Confidence 3588999999999999999999863 79999999999999999876543 589999999988 6665 7899998
Q ss_pred eccccCCCCCH---HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016921 232 SMESGEHMPDK---SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (380)
Q Consensus 232 ~~~~l~~~~~~---~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (380)
++++++ ..+++++.++|||||++++. +........ ... .. ...+++. +|++
T Consensus 149 -----~~~~~~~~~~~~l~~~~~~LkpgG~l~i~-~~~~~~~~~---~~~--~~--------------~~~~~l~-~l~~ 202 (230)
T 1fbn_A 149 -----EDVAQPNQAEILIKNAKWFLKKGGYGMIA-IKARSIDVT---KDP--KE--------------IFKEQKE-ILEA 202 (230)
T ss_dssp -----ECCCSTTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCSS---SCH--HH--------------HHHHHHH-HHHH
T ss_pred -----EecCChhHHHHHHHHHHHhCCCCcEEEEE-EecCCCCCC---CCH--HH--------------hhHHHHH-HHHH
Confidence 345555 77899999999999999997 321111000 000 01 0136677 8999
Q ss_pred CCCcEEEEEecCC
Q 016921 309 LSLEDIKAEDWSQ 321 (380)
Q Consensus 309 aGf~~v~~~~~~~ 321 (380)
+||+.++...+..
T Consensus 203 ~Gf~~~~~~~~~~ 215 (230)
T 1fbn_A 203 GGFKIVDEVDIEP 215 (230)
T ss_dssp HTEEEEEEEECTT
T ss_pred CCCEEEEEEccCC
Confidence 9999998876643
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.67 E-value=2e-16 Score=141.57 Aligned_cols=130 Identities=15% Similarity=0.099 Sum_probs=106.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~~ 233 (380)
++.+|||||||+|..+..++... +.+|+|+|+|+.+++.|++++...++. +++++++|+.+++++ +++||+|++.
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~~~~~~~~~fD~V~~~ 148 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLE-NTTFCHDRAETFGQRKDVRESYDIVTAR 148 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEeccHHHhcccccccCCccEEEEe
Confidence 47899999999999999999755 789999999999999999999888874 699999999887653 5789999986
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
. +.+...+++++.++|||||.+++..-.. .. . ..+++.+.++++||++
T Consensus 149 ~----~~~~~~~l~~~~~~LkpgG~l~~~~g~~---------~~----~---------------~~~~~~~~l~~~g~~~ 196 (240)
T 1xdz_A 149 A----VARLSVLSELCLPLVKKNGLFVALKAAS---------AE----E---------------ELNAGKKAITTLGGEL 196 (240)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC----------CH----H---------------HHHHHHHHHHHTTEEE
T ss_pred c----cCCHHHHHHHHHHhcCCCCEEEEEeCCC---------ch----H---------------HHHHHHHHHHHcCCeE
Confidence 6 4678999999999999999998864110 00 0 1246678899999999
Q ss_pred EEEEecC
Q 016921 314 IKAEDWS 320 (380)
Q Consensus 314 v~~~~~~ 320 (380)
++...+.
T Consensus 197 ~~~~~~~ 203 (240)
T 1xdz_A 197 ENIHSFK 203 (240)
T ss_dssp EEEEEEE
T ss_pred eEEEEEe
Confidence 8877654
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.1e-16 Score=135.89 Aligned_cols=104 Identities=22% Similarity=0.172 Sum_probs=89.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|++++...++ .++.++++|+.+++ +++++||.|++.+.
T Consensus 39 ~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~-~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 39 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCC-CCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 7799999999999999999987 68999999999999999999988887 57999999998865 67889999988655
Q ss_pred cCCCCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~--------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+... ...+++++.++|||||.|++..
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~t 153 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 153 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEe
Confidence 443321 2678999999999999999875
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-15 Score=131.55 Aligned_cols=107 Identities=15% Similarity=0.050 Sum_probs=93.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
++.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++ ++++++++|+.+++ +++++||+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGL-SGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTC-SCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCC-CceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 3789999999999999988876445899999999999999999988887 68999999998763 44689999999888
Q ss_pred cCCC-CCHHHHHHHHHH--hcCCCcEEEEEecc
Q 016921 236 GEHM-PDKSKFVSELAR--VTAPAGTIIIVTWC 265 (380)
Q Consensus 236 l~~~-~~~~~~l~~~~r--~LkpgG~l~~~~~~ 265 (380)
+++. .+...+++++.+ +|+|||.+++....
T Consensus 123 ~~~~~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNVDSADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTSCHHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCcchhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 7765 678899999999 99999999997754
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-17 Score=145.78 Aligned_cols=152 Identities=14% Similarity=0.068 Sum_probs=99.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCC-HHHHHHH---HHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLS-PVQAQRA---NALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s-~~~~~~a---~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+| +.|++.| ++++...++ .++.|+++|++++| ...+|.|.+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~-~~v~~~~~d~~~l~--~~~~d~v~~ 100 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGL-SNVVFVIAAAESLP--FELKNIADS 100 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCC-SSEEEECCBTTBCC--GGGTTCEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCC-CCeEEEEcCHHHhh--hhccCeEEE
Confidence 37899999999999999999655 7899999999 6677666 776666666 47999999999885 223354444
Q ss_pred ccccCCC--------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHH
Q 016921 233 MESGEHM--------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVK 304 (380)
Q Consensus 233 ~~~l~~~--------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (380)
..+...+ .+...++++++++|||||.+++.......... .. ..... .....+.+...+++..
T Consensus 101 i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~----~~----~~~~~--~~~~~~~~~~~~el~~ 170 (225)
T 3p2e_A 101 ISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSYEE----AE----IKKRG--LPLLSKAYFLSEQYKA 170 (225)
T ss_dssp EEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC------------------------CCHHHHHSHHHHH
T ss_pred EEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccchh----ch----hhhcC--CCCCChhhcchHHHHH
Confidence 4433222 12356899999999999999994422111100 00 00000 0000011112235999
Q ss_pred HHHhCCCcEEEEEecCCC
Q 016921 305 LLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 305 ll~~aGf~~v~~~~~~~~ 322 (380)
+++++||+++..+.+..+
T Consensus 171 ~l~~aGf~v~~~~~~~~~ 188 (225)
T 3p2e_A 171 ELSNSGFRIDDVKELDNE 188 (225)
T ss_dssp HHHHHTCEEEEEEEECHH
T ss_pred HHHHcCCCeeeeeecCHH
Confidence 999999999998877754
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-15 Score=135.39 Aligned_cols=130 Identities=13% Similarity=0.060 Sum_probs=104.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (380)
++.+|||+||| +|.++..+++..+.+|+|+|+|+.+++.|++++...++ +++++++|+..+ ++++++||+|++.-.
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~~~fD~I~~npp 132 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS--NVRLVKSNGGIIKGVVEGTFDVIFSAPP 132 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC--CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC--CcEEEeCCchhhhhcccCceeEEEECCC
Confidence 48999999999 99999999987678999999999999999999988876 799999997543 455689999998865
Q ss_pred cCCCCC-------------------HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016921 236 GEHMPD-------------------KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (380)
Q Consensus 236 l~~~~~-------------------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (380)
+++..+ ...+++++.++|||||++++......
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~----------------------------- 183 (230)
T 3evz_A 133 YYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE----------------------------- 183 (230)
T ss_dssp CC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH-----------------------------
T ss_pred CcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH-----------------------------
Confidence 544332 47899999999999999999642100
Q ss_pred CCHHHHHHHHHhCCCcEEEEEe
Q 016921 297 CSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 297 ~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
...+++.++++++||....++.
T Consensus 184 ~~~~~~~~~l~~~g~~~~~~~~ 205 (230)
T 3evz_A 184 KLLNVIKERGIKLGYSVKDIKF 205 (230)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEE
T ss_pred hHHHHHHHHHHHcCCceEEEEe
Confidence 1246788899999998776643
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.67 E-value=8.5e-16 Score=139.08 Aligned_cols=131 Identities=18% Similarity=0.140 Sum_probs=107.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.+++.++++|+.+++ +++++||+|+++-.
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 3889999999999999999988555999999999999999999999998888999999998864 45789999999644
Q ss_pred cCCC--------------------CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 236 GEHM--------------------PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 236 l~~~--------------------~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
+... .+...+++.+.++|||||++++....
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~------------------------------ 178 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP------------------------------ 178 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT------------------------------
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH------------------------------
Confidence 3322 12357999999999999999996410
Q ss_pred CCCHHHHHHHHHhCCCcEEEEEec
Q 016921 296 WCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
....++...+++.||....+..+
T Consensus 179 -~~~~~~~~~l~~~~~~~~~~~~v 201 (259)
T 3lpm_A 179 -ERLLDIIDIMRKYRLEPKRIQFV 201 (259)
T ss_dssp -TTHHHHHHHHHHTTEEEEEEEEE
T ss_pred -HHHHHHHHHHHHCCCceEEEEEe
Confidence 23567778889999998877654
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-15 Score=139.00 Aligned_cols=140 Identities=15% Similarity=0.218 Sum_probs=111.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
..+++.++..+. . ++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+++ ++.++++|+
T Consensus 96 e~l~~~~l~~~~-~-----~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~-~v~~~~~d~ 168 (276)
T 2b3t_A 96 ECLVEQALARLP-E-----QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIK-NIHILQSDW 168 (276)
T ss_dssp HHHHHHHHHHSC-S-----SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCST
T ss_pred HHHHHHHHHhcc-c-----CCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-ceEEEEcch
Confidence 345666666654 2 37899999999999999999876 689999999999999999999888874 799999999
Q ss_pred CCCCCCCCCccEEEecc-------------ccCCCC------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCC
Q 016921 218 LQQPFPDGQFDLVWSME-------------SGEHMP------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPS 272 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~-------------~l~~~~------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~ 272 (380)
.+. +++++||+|+++- +++|.+ +...+++++.++|||||++++...
T Consensus 169 ~~~-~~~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-------- 239 (276)
T 2b3t_A 169 FSA-LAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG-------- 239 (276)
T ss_dssp TGG-GTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC--------
T ss_pred hhh-cccCCccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC--------
Confidence 873 4467899999972 333332 346789999999999999998631
Q ss_pred ccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 273 EESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+...+++.++++++||+.+++.
T Consensus 240 -----------------------~~~~~~~~~~l~~~Gf~~v~~~ 261 (276)
T 2b3t_A 240 -----------------------WQQGEAVRQAFILAGYHDVETC 261 (276)
T ss_dssp -----------------------SSCHHHHHHHHHHTTCTTCCEE
T ss_pred -----------------------chHHHHHHHHHHHCCCcEEEEE
Confidence 1346789999999999877654
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=138.52 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=89.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--CCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--FPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--~~~~~fD~V~~~~ 234 (380)
+.+|||||||+|.++..+++.. +..|+|+|+|+.+++.|++++...++. ++.++++|+.++ + +++++||.|++.+
T Consensus 35 ~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~-nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 35 APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLS-NLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCS-SEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 7799999999999999999987 679999999999999999999888874 799999998874 3 6789999999886
Q ss_pred ccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...+.... ..+++++.++|||||.+++..
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~t 150 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMAT 150 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEe
Confidence 55443222 259999999999999999976
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.3e-16 Score=147.58 Aligned_cols=124 Identities=14% Similarity=0.216 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHH-------HHcCC-CC
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALA-------AARGL-AD 208 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~-------~~~~~-~~ 208 (380)
....+..++..+.+.+ +.+|||||||+|.++..++...++ +|+|||+++.+++.|+++. ...|+ ..
T Consensus 158 ~~~~i~~il~~l~l~~-----gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~ 232 (438)
T 3uwp_A 158 SFDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHA 232 (438)
T ss_dssp HHHHHHHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCC
T ss_pred CHHHHHHHHHhcCCCC-----CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3456677777777665 899999999999999999987765 5999999999999998754 33454 36
Q ss_pred CeEEEEcCCCCCCCCC--CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCC
Q 016921 209 KVSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267 (380)
Q Consensus 209 ~v~~~~~d~~~~~~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~ 267 (380)
+++|+++|+.++++++ ..||+|+++..+ +.++....|.+++++|||||+|++.+....
T Consensus 233 rVefi~GD~~~lp~~d~~~~aDVVf~Nn~~-F~pdl~~aL~Ei~RvLKPGGrIVssE~f~p 292 (438)
T 3uwp_A 233 EYTLERGDFLSEEWRERIANTSVIFVNNFA-FGPEVDHQLKERFANMKEGGRIVSSKPFAP 292 (438)
T ss_dssp EEEEEECCTTSHHHHHHHHTCSEEEECCTT-CCHHHHHHHHHHHTTSCTTCEEEESSCSSC
T ss_pred CeEEEECcccCCccccccCCccEEEEcccc-cCchHHHHHHHHHHcCCCCcEEEEeecccC
Confidence 8999999999987643 479999987665 457888999999999999999999886543
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.6e-16 Score=136.23 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=92.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|.++..+++.. ..+|+|+|+++.+++.|++++...++..+++++++|+.+++ +.+++||+|++..
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 101 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFNL 101 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEcC
Confidence 38899999999999999999985 36999999999999999999998887678999999998875 5568999999876
Q ss_pred ccCC-----C----CCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEH-----M----PDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~-----~----~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+.. + .+...+++++.++|||||++++..+.
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 102 GYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp SBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 5411 1 13467999999999999999998754
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=130.50 Aligned_cols=117 Identities=14% Similarity=0.154 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~ 219 (380)
..+.++..+... ++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++.. ++.++.+|+.+
T Consensus 40 ~~~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~ 113 (194)
T 1dus_A 40 GTKILVENVVVD-----KDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113 (194)
T ss_dssp HHHHHHHHCCCC-----TTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT
T ss_pred HHHHHHHHcccC-----CCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhc
Confidence 344555666544 3889999999999999999988 8899999999999999999998877743 49999999987
Q ss_pred CCCCCCCccEEEeccccCCC-CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 220 QPFPDGQFDLVWSMESGEHM-PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. +++++||+|++...+++. .+...+++++.++|+|||.+++...
T Consensus 114 ~-~~~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 158 (194)
T 1dus_A 114 N-VKDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVIQ 158 (194)
T ss_dssp T-CTTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred c-cccCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEEEEC
Confidence 4 456799999998887763 5668899999999999999999874
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.5e-16 Score=133.04 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=95.2
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCCccEEEec
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSM 233 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~ 233 (380)
.++.+|||||||. +++|+|+.|++.|+++.. .++.+.++|+.++++ ++++||+|++.
T Consensus 11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~-----~~~~~~~~d~~~~~~~~~~~~~fD~V~~~ 70 (176)
T 2ld4_A 11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTG-----NEGRVSVENIKQLLQSAHKESSFDIILSG 70 (176)
T ss_dssp CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTT-----TTSEEEEEEGGGGGGGCCCSSCEEEEEEC
T ss_pred CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhcc-----cCcEEEEechhcCccccCCCCCEeEEEEC
Confidence 3499999999996 238999999999998753 258999999999876 78999999999
Q ss_pred cccCCC-CCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 234 ESGEHM-PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 234 ~~l~~~-~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
.+++|+ ++...++++++++|||||++++.+....... .. ....+.+++.++|+++||
T Consensus 71 ~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~------------------~~---~~~~~~~~~~~~l~~aGf- 128 (176)
T 2ld4_A 71 LVPGSTTLHSAEILAEIARILRPGGCLFLKEPVETAVD------------------NN---SKVKTASKLCSALTLSGL- 128 (176)
T ss_dssp CSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEESSSC------------------SS---SSSCCHHHHHHHHHHTTC-
T ss_pred ChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccccccc------------------cc---cccCCHHHHHHHHHHCCC-
Confidence 999999 8999999999999999999999654221100 00 112478999999999999
Q ss_pred EEEEEe
Q 016921 313 DIKAED 318 (380)
Q Consensus 313 ~v~~~~ 318 (380)
+. +..
T Consensus 129 i~-~~~ 133 (176)
T 2ld4_A 129 VE-VKE 133 (176)
T ss_dssp EE-EEE
T ss_pred cE-eec
Confidence 43 444
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=137.02 Aligned_cols=132 Identities=13% Similarity=0.012 Sum_probs=107.1
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEe
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWS 232 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~ 232 (380)
.++.+|||||||+|..+..++... +.+|+++|+|+.+++.|++++...++. +++++++|+++++.. +++||+|++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~-~v~~~~~d~~~~~~~~~~~~~fD~I~s 157 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLK-GARALWGRAEVLAREAGHREAYARAVA 157 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCS-SEEEEECCHHHHTTSTTTTTCEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCC-ceEEEECcHHHhhcccccCCCceEEEE
Confidence 358899999999999999999876 789999999999999999999988885 699999999887542 479999998
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
.. +.+...+++.+.++|||||++++..-.. . . . ...++.+.++..||.
T Consensus 158 ~a----~~~~~~ll~~~~~~LkpgG~l~~~~g~~----~-----~----~---------------e~~~~~~~l~~~G~~ 205 (249)
T 3g89_A 158 RA----VAPLCVLSELLLPFLEVGGAAVAMKGPR----V-----E----E---------------ELAPLPPALERLGGR 205 (249)
T ss_dssp ES----SCCHHHHHHHHGGGEEEEEEEEEEECSC----C-----H----H---------------HHTTHHHHHHHHTEE
T ss_pred CC----cCCHHHHHHHHHHHcCCCeEEEEEeCCC----c-----H----H---------------HHHHHHHHHHHcCCe
Confidence 64 3577899999999999999998865210 0 0 0 123466778888999
Q ss_pred EEEEEecCC
Q 016921 313 DIKAEDWSQ 321 (380)
Q Consensus 313 ~v~~~~~~~ 321 (380)
++++..+..
T Consensus 206 ~~~~~~~~~ 214 (249)
T 3g89_A 206 LGEVLALQL 214 (249)
T ss_dssp EEEEEEEEC
T ss_pred EEEEEEeeC
Confidence 998877643
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=137.52 Aligned_cols=137 Identities=18% Similarity=0.277 Sum_probs=113.5
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|+++++..+++++++++++|+.+.
T Consensus 83 ~~i~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 157 (255)
T 3mb5_A 83 ALIVAYAGISP-----GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG 157 (255)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC
T ss_pred HHHHHhhCCCC-----CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc
Confidence 34555555544 8999999999999999999984 6899999999999999999999888877799999999864
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
+++++||+|++ +.+++..+++++.++|+|||.+++..... ...+
T Consensus 158 -~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~------------------------------~~~~ 201 (255)
T 3mb5_A 158 -IEEENVDHVIL-----DLPQPERVVEHAAKALKPGGFFVAYTPCS------------------------------NQVM 201 (255)
T ss_dssp -CCCCSEEEEEE-----CSSCGGGGHHHHHHHEEEEEEEEEEESSH------------------------------HHHH
T ss_pred -cCCCCcCEEEE-----CCCCHHHHHHHHHHHcCCCCEEEEEECCH------------------------------HHHH
Confidence 66788999997 45677889999999999999999976310 0235
Q ss_pred HHHHHHHhCC--CcEEEEEecC
Q 016921 301 DYVKLLQSLS--LEDIKAEDWS 320 (380)
Q Consensus 301 ~~~~ll~~aG--f~~v~~~~~~ 320 (380)
++.++++++| |..++..+..
T Consensus 202 ~~~~~l~~~g~~f~~~~~~e~~ 223 (255)
T 3mb5_A 202 RLHEKLREFKDYFMKPRTINVL 223 (255)
T ss_dssp HHHHHHHHTGGGBSCCEEECCC
T ss_pred HHHHHHHHcCCCccccEEEEEe
Confidence 6778999999 9988776543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=132.32 Aligned_cols=111 Identities=17% Similarity=0.192 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.+..++..+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.|++++...++. +++++.+|+.+.
T Consensus 65 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~ 137 (210)
T 3lbf_A 65 MVARMTELLELTP-----QSRVLEIGTGSGYQTAILAHL-VQHVCSVERIKGLQWQARRRLKNLDLH-NVSTRHGDGWQG 137 (210)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCC-ceEEEECCcccC
Confidence 4555566665544 899999999999999999998 899999999999999999999888775 799999999886
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..++++||+|++..+++|+++ ++.++|||||++++...
T Consensus 138 ~~~~~~~D~i~~~~~~~~~~~------~~~~~L~pgG~lv~~~~ 175 (210)
T 3lbf_A 138 WQARAPFDAIIVTAAPPEIPT------ALMTQLDEGGILVLPVG 175 (210)
T ss_dssp CGGGCCEEEEEESSBCSSCCT------HHHHTEEEEEEEEEEEC
T ss_pred CccCCCccEEEEccchhhhhH------HHHHhcccCcEEEEEEc
Confidence 656789999999999999976 58999999999999764
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.1e-15 Score=129.39 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=99.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. + +|+|+|+|+.|++. ..+++++++|+.+ ++++++||+|+++..+++
T Consensus 24 ~~~vLD~GcG~G~~~~~l~~~-~-~v~gvD~s~~~~~~----------~~~~~~~~~d~~~-~~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 24 MKIVLDLGTSTGVITEQLRKR-N-TVVSTDLNIRALES----------HRGGNLVRADLLC-SINQESVDVVVFNPPYVP 90 (170)
T ss_dssp SCEEEEETCTTCHHHHHHTTT-S-EEEEEESCHHHHHT----------CSSSCEEECSTTT-TBCGGGCSEEEECCCCBT
T ss_pred CCeEEEeccCccHHHHHHHhc-C-cEEEEECCHHHHhc----------ccCCeEEECChhh-hcccCCCCEEEECCCCcc
Confidence 679999999999999999987 5 99999999999986 2579999999988 556689999999888876
Q ss_pred CCCH---------HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 239 MPDK---------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 239 ~~~~---------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
.++. ..+++++.+.| |||.+++..... ...+++.++++++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~------------------------------~~~~~l~~~l~~~ 139 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEA------------------------------NRPKEVLARLEER 139 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGG------------------------------GCHHHHHHHHHHT
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecC------------------------------CCHHHHHHHHHHC
Confidence 5443 57889999999 999999987321 2467889999999
Q ss_pred CCcEEEEEecCC
Q 016921 310 SLEDIKAEDWSQ 321 (380)
Q Consensus 310 Gf~~v~~~~~~~ 321 (380)
||+.+.+.....
T Consensus 140 gf~~~~~~~~~~ 151 (170)
T 3q87_B 140 GYGTRILKVRKI 151 (170)
T ss_dssp TCEEEEEEEEEC
T ss_pred CCcEEEEEeecc
Confidence 999887765443
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.64 E-value=3.9e-15 Score=126.69 Aligned_cols=132 Identities=17% Similarity=0.151 Sum_probs=108.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+...++..+...+ +.+|||+|||+|.++..+++ .+.+|+|+|+++.+++.+++++...++ +++.++++|+.+
T Consensus 23 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~~d~~~- 94 (183)
T 2yxd_A 23 IRAVSIGKLNLNK-----DDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNI-KNCQIIKGRAED- 94 (183)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTC-CSEEEEESCHHH-
T ss_pred HHHHHHHHcCCCC-----CCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCC-CcEEEEECCccc-
Confidence 3444455555443 78999999999999999998 478999999999999999999988887 579999999887
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
++++++||+|++..+ .+...+++++.++ |||.+++..... ....
T Consensus 95 ~~~~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~~~~~------------------------------~~~~ 138 (183)
T 2yxd_A 95 VLDKLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVANTIVL------------------------------ENAA 138 (183)
T ss_dssp HGGGCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEEESCH------------------------------HHHH
T ss_pred cccCCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEEeccc------------------------------ccHH
Confidence 666689999999887 6788999999999 999999987321 0235
Q ss_pred HHHHHHHhCCCcEEEE
Q 016921 301 DYVKLLQSLSLEDIKA 316 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~ 316 (380)
++.+.++++||.+..+
T Consensus 139 ~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 139 KIINEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHcCCeEEEE
Confidence 6788999999876554
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.9e-15 Score=136.26 Aligned_cols=135 Identities=14% Similarity=0.203 Sum_probs=111.2
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQ 219 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~ 219 (380)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++... + ..++.+..+|+.+
T Consensus 86 ~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g-~~~v~~~~~d~~~ 159 (258)
T 2pwy_A 86 SAMVTLLDLAP-----GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQ-VENVRFHLGKLEE 159 (258)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-CCCEEEEESCGGG
T ss_pred HHHHHHcCCCC-----CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcC-CCCEEEEECchhh
Confidence 44555555544 8899999999999999999984 679999999999999999998876 6 4689999999998
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
.++++++||+|++ +.+++..+++++.++|+|||.+++..... . ..
T Consensus 160 ~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~---------------~---------------~~ 204 (258)
T 2pwy_A 160 AELEEAAYDGVAL-----DLMEPWKVLEKAALALKPDRFLVAYLPNI---------------T---------------QV 204 (258)
T ss_dssp CCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEESCH---------------H---------------HH
T ss_pred cCCCCCCcCEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeCCH---------------H---------------HH
Confidence 8777789999997 45677789999999999999999987310 0 13
Q ss_pred HHHHHHHHhCCCcEEEEEe
Q 016921 300 ADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~~~ 318 (380)
.++.+.|+++||..++..+
T Consensus 205 ~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 205 LELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 4666788889999887654
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-16 Score=143.99 Aligned_cols=168 Identities=13% Similarity=0.113 Sum_probs=111.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
....++..++..+... ..++.+|||+|||+|.++..++... +.+|+|+|+|+.|++.|++++...++.++++++++
T Consensus 47 ~~~~~~~~~~~~~~~~---~~~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 123 (254)
T 2h00_A 47 NYIHWVEDLIGHQDSD---KSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKV 123 (254)
T ss_dssp HHHHHHHHHHCCCCGG---GCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEEC
T ss_pred HHHHHHHHHHhhcccc---CCCCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEc
Confidence 3444555555433211 0147799999999999999998876 78999999999999999999998888777999999
Q ss_pred CCCCC---CCC---CCCccEEEeccccCCCC---------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc
Q 016921 216 DALQQ---PFP---DGQFDLVWSMESGEHMP---------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274 (380)
Q Consensus 216 d~~~~---~~~---~~~fD~V~~~~~l~~~~---------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~ 274 (380)
|+.+. +++ +++||+|++.-..++.. ....++.+++++|||||.+.+.+..
T Consensus 124 d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~~~--------- 194 (254)
T 2h00_A 124 PQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKRI--------- 194 (254)
T ss_dssp CTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHTHHHHHHHH---------
T ss_pred chhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEHHH---------
Confidence 98762 344 26899999985444332 1134678899999999998775421
Q ss_pred ccchHHHHHHHHHhhccC----CCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 275 SLQPWEQELLKKICDAYY----LPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
............. .......+++.++|+++||+.+++..+..
T Consensus 195 -----~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~~~~~ 240 (254)
T 2h00_A 195 -----IHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYTEFCQ 240 (254)
T ss_dssp -----HHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEEEEEE
T ss_pred -----HHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEEEEec
Confidence 0011111111110 01123458899999999999998776543
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=9.5e-16 Score=145.98 Aligned_cols=103 Identities=22% Similarity=0.288 Sum_probs=92.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++ +++++++|+.+.+.++++||+|+++..++
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~-g~~V~gvDis~~al~~A~~n~~~~~~--~v~~~~~D~~~~~~~~~~fD~Ii~npp~~ 309 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEANAL--KAQALHSDVDEALTEEARFDIIVTNPPFH 309 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT-TCEEEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTSCTTCCEEEEEECCCCC
T ss_pred CCCEEEEEeeeCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCC--CeEEEEcchhhccccCCCeEEEEECCchh
Confidence 3789999999999999999987 88999999999999999999988775 38999999999876668999999998888
Q ss_pred C-----CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 H-----MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~-----~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+ ..+...+++++.++|||||.+++..
T Consensus 310 ~~~~~~~~~~~~~l~~~~~~LkpGG~l~iv~ 340 (381)
T 3dmg_A 310 VGGAVILDVAQAFVNVAAARLRPGGVFFLVS 340 (381)
T ss_dssp TTCSSCCHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcccccHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence 7 3456789999999999999999976
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=129.37 Aligned_cols=131 Identities=22% Similarity=0.321 Sum_probs=105.9
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
..++..+.+.+ +.+|||+|||+|.++..+++.. .+|+|+|+++.+++.+++++...++..++.+..+|+.+ ++
T Consensus 23 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~ 95 (192)
T 1l3i_A 23 CLIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPE-AL 95 (192)
T ss_dssp HHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHH-HH
T ss_pred HHHHHhcCCCC-----CCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHH-hc
Confidence 33444444443 8899999999999999999874 89999999999999999999888876789999999876 23
Q ss_pred CC-CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 223 PD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 223 ~~-~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+. ++||+|++...++ +...+++++.++|+|||.+++..... .+..+
T Consensus 96 ~~~~~~D~v~~~~~~~---~~~~~l~~~~~~l~~gG~l~~~~~~~------------------------------~~~~~ 142 (192)
T 1l3i_A 96 CKIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTAILL------------------------------ETKFE 142 (192)
T ss_dssp TTSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEECBH------------------------------HHHHH
T ss_pred ccCCCCCEEEECCchH---HHHHHHHHHHHhcCCCcEEEEEecCc------------------------------chHHH
Confidence 33 5899999987765 56889999999999999999976320 12457
Q ss_pred HHHHHHhCCCcE
Q 016921 302 YVKLLQSLSLED 313 (380)
Q Consensus 302 ~~~ll~~aGf~~ 313 (380)
+.+++++.||..
T Consensus 143 ~~~~l~~~g~~~ 154 (192)
T 1l3i_A 143 AMECLRDLGFDV 154 (192)
T ss_dssp HHHHHHHTTCCC
T ss_pred HHHHHHHCCCce
Confidence 788999999943
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.4e-15 Score=137.52 Aligned_cols=129 Identities=17% Similarity=0.086 Sum_probs=106.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.++++++++|+.+++. +++||+|++...
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~~~p-- 201 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-ENIADRILMGYV-- 201 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-CSCEEEEEECCC--
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-cCCccEEEECCc--
Confidence 38899999999999999999974337999999999999999999998887779999999999865 689999998533
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
.+...++.++.++|||||.+++.+........ -...+.+.+.++++||+...
T Consensus 202 --~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~------------------------~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEEE
T ss_pred --hhHHHHHHHHHHHCCCCeEEEEEEeecccccc------------------------ccHHHHHHHHHHHcCCeeEE
Confidence 34467899999999999999998864311100 02457788999999998776
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-15 Score=143.97 Aligned_cols=148 Identities=19% Similarity=0.261 Sum_probs=110.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||||||+|.++..+++.+ +.+++++|+ +.+++.+++ . .+++++.+|+.+ +++ .||+|++..++|
T Consensus 194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~-~~v~~~~~d~~~-~~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------N-ENLNFVGGDMFK-SIP--SADAVLLKWVLH 262 (358)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------C-SSEEEEECCTTT-CCC--CCSEEEEESCGG
T ss_pred CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------C-CCcEEEeCccCC-CCC--CceEEEEccccc
Confidence 6899999999999999999987 679999999 788876653 2 469999999987 665 499999999999
Q ss_pred CCCCHH--HHHHHHHHhcCC---CcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 238 HMPDKS--KFVSELARVTAP---AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 238 ~~~~~~--~~l~~~~r~Lkp---gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
|+++.. .++++++++||| ||++++.++..+...... .. ......+............++.++|.++|+++||+
T Consensus 263 ~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~~~~-~~-~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~ 340 (358)
T 1zg3_A 263 DWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETSDDR-GL-TELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFS 340 (358)
T ss_dssp GSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTCSCH-HH-HHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCCccc-hh-hhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCC
Confidence 999876 999999999999 999999987654322110 00 01111111100000111246899999999999999
Q ss_pred EEEEEec
Q 016921 313 DIKAEDW 319 (380)
Q Consensus 313 ~v~~~~~ 319 (380)
++++...
T Consensus 341 ~~~~~~~ 347 (358)
T 1zg3_A 341 SYKITPI 347 (358)
T ss_dssp EEEEEEE
T ss_pred eeEEEec
Confidence 9988764
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.2e-15 Score=139.23 Aligned_cols=125 Identities=15% Similarity=0.202 Sum_probs=105.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-GLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|.++..+++.. +.+|+|+|+++.+++.|++++... +. ++++++++|+.+ ++++++||+|++
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~-~~v~~~~~d~~~-~~~~~~fD~Vi~-- 185 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDI-GNVRTSRSDIAD-FISDQMYDAVIA-- 185 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCC-TTEEEECSCTTT-CCCSCCEEEEEE--
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCC-CcEEEEECchhc-cCcCCCccEEEE--
Confidence 48899999999999999999873 689999999999999999999876 64 589999999988 566789999998
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+++++..+++++.++|||||++++.+... ...+++.+.++++||..+
T Consensus 186 ---~~~~~~~~l~~~~~~LkpgG~l~i~~~~~------------------------------~~~~~~~~~l~~~Gf~~~ 232 (275)
T 1yb2_A 186 ---DIPDPWNHVQKIASMMKPGSVATFYLPNF------------------------------DQSEKTVLSLSASGMHHL 232 (275)
T ss_dssp ---CCSCGGGSHHHHHHTEEEEEEEEEEESSH------------------------------HHHHHHHHHSGGGTEEEE
T ss_pred ---cCcCHHHHHHHHHHHcCCCCEEEEEeCCH------------------------------HHHHHHHHHHHHCCCeEE
Confidence 66788899999999999999999987310 013567778889999988
Q ss_pred EEEec
Q 016921 315 KAEDW 319 (380)
Q Consensus 315 ~~~~~ 319 (380)
+..+.
T Consensus 233 ~~~~~ 237 (275)
T 1yb2_A 233 ETVEL 237 (275)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 87653
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.8e-15 Score=141.01 Aligned_cols=102 Identities=23% Similarity=0.238 Sum_probs=90.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc---
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME--- 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~--- 234 (380)
++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.+++.++++|+.++++++++||+|++..
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~ 142 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 142 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCchh
Confidence 3889999999999999999987334999999997 999999999988887899999999999888888999999876
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~ 260 (380)
.+.+..+...+++++.++|||||.++
T Consensus 143 ~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 143 FLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred hccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 45555677889999999999999987
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.3e-16 Score=134.85 Aligned_cols=104 Identities=22% Similarity=0.291 Sum_probs=90.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++....+|+|+|+|+.+++.++++... ..++.++++|+.++++++++||+|++..+++
T Consensus 42 ~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~ 118 (215)
T 2pxx_A 42 PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---VPQLRWETMDVRKLDFPSASFDVVLEKGTLD 118 (215)
T ss_dssp TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT---CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc---CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence 3789999999999999999987323899999999999999988753 2479999999999888889999999988876
Q ss_pred CCC---------------CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMP---------------DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~---------------~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++. +...+++++.++|||||.+++.++
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 119 ALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred hhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 654 568899999999999999999885
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=135.87 Aligned_cols=110 Identities=15% Similarity=0.107 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++..+.+.+ +.+|||||||+|.++..++++ +.+|+|+|+|+.|++.|++++... ++..++.+.
T Consensus 33 ~~~~il~~l~l~~-----g~~VLDlGcGtG~~a~~La~~-g~~V~gvD~S~~ml~~Ar~~~~~~-------~v~~~~~~~ 99 (261)
T 3iv6_A 33 DRENDIFLENIVP-----GSTVAVIGASTRFLIEKALER-GASVTVFDFSQRMCDDLAEALADR-------CVTIDLLDI 99 (261)
T ss_dssp HHHHHHHTTTCCT-----TCEEEEECTTCHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHTSSS-------CCEEEECCT
T ss_pred HHHHHHHhcCCCC-----cCEEEEEeCcchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc-------cceeeeeec
Confidence 3455566665554 899999999999999999987 889999999999999999887432 222333332
Q ss_pred CC-----CCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PF-----PDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~-----~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+. .+++||+|++..+++|+. +...+++++.++| |||+++++..
T Consensus 100 ~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 100 TAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp TSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred ccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 22 257899999999999985 4567999999999 9999999763
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.61 E-value=4.2e-15 Score=129.55 Aligned_cols=99 Identities=16% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++... +.+++|+|+|+.+++.+++++...++. ++.+.++|+.+.+ +.++||+|++..
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~~~-~~~~~D~i~~~~--- 140 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLE-NIEPVQSRVEEFP-SEPPFDGVISRA--- 140 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCS-SEEEEECCTTTSC-CCSCEEEEECSC---
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEecchhhCC-ccCCcCEEEEec---
Confidence 6799999999999999999876 689999999999999999999888774 4999999998875 457899999753
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+...+++++.++|+|||.+++..
T Consensus 141 -~~~~~~~l~~~~~~L~~gG~l~~~~ 165 (207)
T 1jsx_A 141 -FASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp -SSSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred -cCCHHHHHHHHHHhcCCCcEEEEEe
Confidence 3577899999999999999999974
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-16 Score=137.83 Aligned_cols=143 Identities=16% Similarity=0.141 Sum_probs=91.5
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
..+++.++..+... .++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++...+. +++++++|+
T Consensus 15 ~~~~~~~~~~l~~~----~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~ 88 (215)
T 4dzr_A 15 EVLVEEAIRFLKRM----PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA--VVDWAAADG 88 (215)
T ss_dssp HHHHHHHHHHHTTC----CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC---------------------CCHHHH
T ss_pred HHHHHHHHHHhhhc----CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC--ceEEEEcch
Confidence 44566666665431 248899999999999999999986 66999999999999999998877665 788999998
Q ss_pred CCCCCCC-----CCccEEEeccccCCCCCH--------------------------HHHHHHHHHhcCCCcEEEEEeccC
Q 016921 218 LQQPFPD-----GQFDLVWSMESGEHMPDK--------------------------SKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 218 ~~~~~~~-----~~fD~V~~~~~l~~~~~~--------------------------~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
.+ ++++ ++||+|++...+++..+. ..+++++.++|||||++++.+..
T Consensus 89 ~~-~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 166 (215)
T 4dzr_A 89 IE-WLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVG- 166 (215)
T ss_dssp HH-HHHHHHHTTCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECT-
T ss_pred Hh-hhhhhhhccCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEEC-
Confidence 77 4444 899999996444332211 67889999999999995555421
Q ss_pred CCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH--hCCCcEEEEEe
Q 016921 267 RDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ--SLSLEDIKAED 318 (380)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~aGf~~v~~~~ 318 (380)
....+.+.++++ ++||..+++..
T Consensus 167 -----------------------------~~~~~~~~~~l~~~~~gf~~~~~~~ 191 (215)
T 4dzr_A 167 -----------------------------HNQADEVARLFAPWRERGFRVRKVK 191 (215)
T ss_dssp -----------------------------TSCHHHHHHHTGGGGGGTEECCEEE
T ss_pred -----------------------------CccHHHHHHHHHHhhcCCceEEEEE
Confidence 123567888888 89998776543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=140.84 Aligned_cols=104 Identities=25% Similarity=0.232 Sum_probs=91.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG- 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l- 236 (380)
++.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++++|++++++++++||+|++..+.
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~~ 144 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 144 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccccc
Confidence 378999999999999999998733499999999 599999999999998888999999999998888999999986654
Q ss_pred --CCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 237 --EHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 237 --~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.+..+...+++++.++|||||.++..
T Consensus 145 ~l~~~~~~~~~l~~~~r~LkpgG~li~~ 172 (349)
T 3q7e_A 145 CLFYESMLNTVLHARDKWLAPDGLIFPD 172 (349)
T ss_dssp TBTBTCCHHHHHHHHHHHEEEEEEEESC
T ss_pred cccCchhHHHHHHHHHHhCCCCCEEccc
Confidence 34478899999999999999998743
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=134.65 Aligned_cols=125 Identities=19% Similarity=0.264 Sum_probs=104.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++. +.+|+|+|+++.+++.+++++...++. +.+..+|+.+. +++++||+|+++...+
T Consensus 120 ~~~~VLDiGcG~G~l~~~la~~-g~~v~gvDi~~~~v~~a~~n~~~~~~~--v~~~~~d~~~~-~~~~~fD~Vv~n~~~~ 195 (254)
T 2nxc_A 120 PGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGVR--PRFLEGSLEAA-LPFGPFDLLVANLYAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTCC--CEEEESCHHHH-GGGCCEEEEEEECCHH
T ss_pred CCCEEEEecCCCcHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChhhc-CcCCCCCEEEECCcHH
Confidence 3789999999999999998886 669999999999999999999887764 89999998763 4467899999865443
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....+++++.++|||||++++..+.. ...+++.++++++||++++..
T Consensus 196 ---~~~~~l~~~~~~LkpgG~lils~~~~------------------------------~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 196 ---LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ---HHHHHHHHHHHHcCCCCEEEEEeecc------------------------------CCHHHHHHHHHHCCCEEEEEe
Confidence 34689999999999999999986421 135788999999999998876
Q ss_pred ec
Q 016921 318 DW 319 (380)
Q Consensus 318 ~~ 319 (380)
..
T Consensus 243 ~~ 244 (254)
T 2nxc_A 243 AE 244 (254)
T ss_dssp EE
T ss_pred cc
Confidence 53
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.3e-15 Score=149.23 Aligned_cols=105 Identities=22% Similarity=0.296 Sum_probs=92.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHc------CCCCCeEEEEcCCCCCCCCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAAR------GLADKVSFQVGDALQQPFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~fD~V 230 (380)
+.+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++++... ++ .++.|+++|+.++++++++||+|
T Consensus 722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl-~nVefiqGDa~dLp~~d~sFDlV 800 (950)
T 3htx_A 722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNV-KSATLYDGSILEFDSRLHDVDIG 800 (950)
T ss_dssp CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSC-SEEEEEESCTTSCCTTSCSCCEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCC-CceEEEECchHhCCcccCCeeEE
Confidence 88999999999999999998742 79999999999999999877543 33 47999999999999888999999
Q ss_pred EeccccCCCCCHH--HHHHHHHHhcCCCcEEEEEecc
Q 016921 231 WSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 231 ~~~~~l~~~~~~~--~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++..+++|++++. .+++++.++|||| .+++.+..
T Consensus 801 V~~eVLeHL~dp~l~~~L~eI~RvLKPG-~LIISTPN 836 (950)
T 3htx_A 801 TCLEVIEHMEEDQACEFGEKVLSLFHPK-LLIVSTPN 836 (950)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTTCCS-EEEEEECB
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCC-EEEEEecC
Confidence 9999999998765 5999999999999 87777643
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.4e-15 Score=133.82 Aligned_cols=136 Identities=20% Similarity=0.258 Sum_probs=110.9
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++...++..++.+..+|+.+.
T Consensus 102 ~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 176 (277)
T 1o54_A 102 SFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG 176 (277)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC
T ss_pred HHHHHHhCCCC-----CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc
Confidence 34555555544 8899999999999999999984 5799999999999999999998888766899999999876
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
+++++||+|++ +.+++..+++++.++|+|||.+++..... . ...
T Consensus 177 -~~~~~~D~V~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~---------------~---------------~~~ 220 (277)
T 1o54_A 177 -FDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------QVQ 220 (277)
T ss_dssp -CSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------HHH
T ss_pred -ccCCccCEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEeCCH---------------H---------------HHH
Confidence 56678999998 45677889999999999999999987310 0 134
Q ss_pred HHHHHHHhCCCcEEEEEec
Q 016921 301 DYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~ 319 (380)
++.+.|+++||..++....
T Consensus 221 ~~~~~l~~~gf~~~~~~~~ 239 (277)
T 1o54_A 221 ETLKKLQELPFIRIEVWES 239 (277)
T ss_dssp HHHHHHHHSSEEEEEEECC
T ss_pred HHHHHHHHCCCceeEEEEE
Confidence 5667888899998876543
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.1e-15 Score=141.13 Aligned_cols=103 Identities=26% Similarity=0.306 Sum_probs=91.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++. +. +|+|+|+| .|++.|+++++..++.++++++++|+++++++ ++||+|++..+.
T Consensus 63 ~~~~VLDlGcGtG~ls~~la~~-g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~~~~~ 139 (376)
T 3r0q_C 63 EGKTVLDVGTGSGILAIWSAQA-GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLP-EKVDVIISEWMG 139 (376)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCS-SCEEEEEECCCB
T ss_pred CCCEEEEeccCcCHHHHHHHhc-CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcC-CcceEEEEcChh
Confidence 4899999999999999999987 55 99999999 99999999999999888899999999998876 899999996655
Q ss_pred CCC---CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHM---PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~---~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++ .+...+++++.++|||||.+++..
T Consensus 140 ~~l~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 140 YFLLRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp TTBTTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hcccchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 554 467889999999999999998755
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-16 Score=142.11 Aligned_cols=140 Identities=25% Similarity=0.290 Sum_probs=112.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++..++.++++|+.+++ ++++||+|++...+++
T Consensus 79 ~~~vLD~gcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~D~v~~~~~~~~ 156 (241)
T 3gdh_A 79 CDVVVDAFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA-SFLKADVVFLSPPWGG 156 (241)
T ss_dssp CSEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG-GGCCCSEEEECCCCSS
T ss_pred CCEEEECccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc-ccCCCCEEEECCCcCC
Confidence 789999999999999999987 79999999999999999999998887668999999998876 5689999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh--hccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
..+....+.+++++|+|||.+++... .... .....+.....+++..++...|...+..
T Consensus 157 ~~~~~~~~~~~~~~L~pgG~~i~~~~--------------------~~~~~~~~~~lp~~~~~~~~~~~l~~~g~~~i~~ 216 (241)
T 3gdh_A 157 PDYATAETFDIRTMMSPDGFEIFRLS--------------------KKITNNIVYFLPRNADIDQVASLAGPGGQVEIEQ 216 (241)
T ss_dssp GGGGGSSSBCTTTSCSSCHHHHHHHH--------------------HHHCSCEEEEEETTBCHHHHHHTTCTTCCEEEEE
T ss_pred cchhhhHHHHHHhhcCCcceeHHHHH--------------------HhhCCceEEECCCCCCHHHHHHHhccCCCEEEEe
Confidence 87777678889999999999655321 1111 1112233457788888888888766655
Q ss_pred EecC
Q 016921 317 EDWS 320 (380)
Q Consensus 317 ~~~~ 320 (380)
....
T Consensus 217 ~~~~ 220 (241)
T 3gdh_A 217 NFLN 220 (241)
T ss_dssp EEET
T ss_pred hhhc
Confidence 4433
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=3.9e-15 Score=131.42 Aligned_cols=105 Identities=18% Similarity=0.261 Sum_probs=89.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC----CCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP----DGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~fD~V 230 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. + +. .++||+|
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V 138 (221)
T 3u81_A 59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMV 138 (221)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEE
T ss_pred CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEE
Confidence 7899999999999999999864 6899999999999999999999888877899999998552 2 22 2689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++....++..+...++..+ ++|||||.|++.+.
T Consensus 139 ~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~~~~ 171 (221)
T 3u81_A 139 FLDHWKDRYLPDTLLLEKC-GLLRKGTVLLADNV 171 (221)
T ss_dssp EECSCGGGHHHHHHHHHHT-TCCCTTCEEEESCC
T ss_pred EEcCCcccchHHHHHHHhc-cccCCCeEEEEeCC
Confidence 9988777766666777777 99999999998664
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.1e-15 Score=129.71 Aligned_cols=122 Identities=13% Similarity=0.188 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEE
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQ 213 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~ 213 (380)
....++..++...+.+ ++.+|||||||+|..+..+++.. +.+|+++|+++.+++.|+++++..++. ++++++
T Consensus 40 ~~~~~l~~l~~~~~~~-----~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~ 114 (221)
T 3dr5_A 40 MTGQLLTTLAATTNGN-----GSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFL 114 (221)
T ss_dssp HHHHHHHHHHHHSCCT-----TCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred HHHHHHHHHHHhhCCC-----CCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEE
Confidence 3345566666554422 25599999999999999999976 689999999999999999999999987 789999
Q ss_pred EcCCCCC--CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 214 VGDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 214 ~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++|+.+. .+++++||+|++... ..+...+++++.++|||||.+++.+...
T Consensus 115 ~gda~~~l~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~dn~~~ 166 (221)
T 3dr5_A 115 LSRPLDVMSRLANDSYQLVFGQVS---PMDLKALVDAAWPLLRRGGALVLADALL 166 (221)
T ss_dssp CSCHHHHGGGSCTTCEEEEEECCC---TTTHHHHHHHHHHHEEEEEEEEETTTTG
T ss_pred EcCHHHHHHHhcCCCcCeEEEcCc---HHHHHHHHHHHHHHcCCCcEEEEeCCCC
Confidence 9998764 234689999998653 3466789999999999999999966443
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-15 Score=131.64 Aligned_cols=106 Identities=15% Similarity=0.063 Sum_probs=89.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC--CCCCC-ccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP--FPDGQ-FDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~--~~~~~-fD~V~~~~ 234 (380)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++. ++++++++|+.+.. +++++ ||+|++..
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 133 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 133 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEECC
Confidence 7899999999999999877764469999999999999999999888874 58999999987743 23578 99999987
Q ss_pred ccCCCCCHHHHHHHH--HHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~--~r~LkpgG~l~~~~~~ 265 (380)
.+ +..+...+++.+ .++|||||.+++....
T Consensus 134 ~~-~~~~~~~~l~~~~~~~~LkpgG~l~i~~~~ 165 (201)
T 2ift_A 134 PF-HFNLAEQAISLLCENNWLKPNALIYVETEK 165 (201)
T ss_dssp CS-SSCHHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred CC-CCccHHHHHHHHHhcCccCCCcEEEEEECC
Confidence 74 456778889998 6689999999987643
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=127.23 Aligned_cols=101 Identities=14% Similarity=0.164 Sum_probs=80.8
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~ 231 (380)
.++.+|||||||+|.++..+++.. +.+|+|+|+|+.|++.+.+.+... .++.++++|+... +++ ++||+|+
T Consensus 56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~-~~fD~V~ 131 (210)
T 1nt2_A 56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIV-EKVDLIY 131 (210)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTC-CCEEEEE
T ss_pred CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC---CCeEEEEcCCCCchhhcccc-cceeEEE
Confidence 358899999999999999999876 379999999999887776666543 4789999998773 444 7899999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.. ..+ .+...++++++++|||||++++..
T Consensus 132 ~~~-~~~-~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 132 QDI-AQK-NQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp ECC-CST-THHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Eec-cCh-hHHHHHHHHHHHHhCCCCEEEEEE
Confidence 872 222 234456899999999999999974
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=127.99 Aligned_cols=126 Identities=13% Similarity=0.081 Sum_probs=105.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++.+.++|..+...++++||+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 47899999999999999999974 45899999999999999999999999889999999998865444579998876544
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
. .-...++....+.|+++|+|++.-. ...+.++++|.+.||.+++.
T Consensus 101 g--~lI~~IL~~~~~~l~~~~~lIlqp~--------------------------------~~~~~lr~~L~~~Gf~i~~E 146 (230)
T 3lec_A 101 G--RLIADILNNDIDKLQHVKTLVLQPN--------------------------------NREDDLRKWLAANDFEIVAE 146 (230)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCcCCEEEEECC--------------------------------CChHHHHHHHHHCCCEEEEE
Confidence 3 1246788888999999999999752 13578999999999998886
Q ss_pred E
Q 016921 317 E 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 147 ~ 147 (230)
T 3lec_A 147 D 147 (230)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.58 E-value=3e-14 Score=128.00 Aligned_cols=105 Identities=21% Similarity=0.288 Sum_probs=90.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC--CCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~fD~V~~~ 233 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. +.. .++||+|++.
T Consensus 64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d 143 (248)
T 3tfw_A 64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIFID 143 (248)
T ss_dssp CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEEEC
T ss_pred CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEEEC
Confidence 7899999999999999999976 5799999999999999999999999888999999998763 322 3589999986
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
.. ..+...+++++.++|||||+|++.+...
T Consensus 144 ~~---~~~~~~~l~~~~~~LkpGG~lv~~~~~~ 173 (248)
T 3tfw_A 144 AD---KPNNPHYLRWALRYSRPGTLIIGDNVVR 173 (248)
T ss_dssp SC---GGGHHHHHHHHHHTCCTTCEEEEECCSG
T ss_pred Cc---hHHHHHHHHHHHHhcCCCeEEEEeCCCc
Confidence 53 4566789999999999999999977543
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.2e-15 Score=131.31 Aligned_cols=105 Identities=21% Similarity=0.366 Sum_probs=85.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH------cCCCCCeEEEEcCCCC-CC--CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA------RGLADKVSFQVGDALQ-QP--FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~~~~~f 227 (380)
++.+|||||||+|.++..+++.. +..|+|+|+|+.|++.|++++.. .+. .++.++++|+.+ ++ +++++|
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~ 124 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGF-QNIACLRSNAMKHLPNFFYKGQL 124 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCC-TTEEEEECCTTTCHHHHCCTTCE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCC-CeEEEEECcHHHhhhhhCCCcCe
Confidence 36789999999999999999886 67999999999999999988754 233 589999999987 55 778999
Q ss_pred cEEEeccccCCCCC--------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPD--------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~--------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|.|++.+.-.+... ...+++++.++|||||.|++..
T Consensus 125 D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~~t 168 (235)
T 3ckk_A 125 TKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTIT 168 (235)
T ss_dssp EEEEEESCC-----------CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEEEe
Confidence 99987554333211 1479999999999999999875
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-14 Score=134.92 Aligned_cols=112 Identities=14% Similarity=0.246 Sum_probs=95.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++..++..+.+.+ +.+|||||||+|.++..+++.. ..+|+|+|+|+.+++.|++++...++. ++.++++|+.
T Consensus 63 ~~~~l~~~l~~~~-----~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~-~v~~~~~d~~ 136 (317)
T 1dl5_A 63 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIE-NVIFVCGDGY 136 (317)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CeEEEECChh
Confidence 4556666666554 8999999999999999999875 256999999999999999999888875 5999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+.++++||+|++..+++|+. +++.++|||||++++...
T Consensus 137 ~~~~~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 137 YGVPEFSPYDVIFVTVGVDEVP------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp GCCGGGCCEEEEEECSBBSCCC------HHHHHHEEEEEEEEEEBC
T ss_pred hccccCCCeEEEEEcCCHHHHH------HHHHHhcCCCcEEEEEEC
Confidence 8654568899999999999987 578899999999999864
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.58 E-value=8.2e-15 Score=137.70 Aligned_cols=160 Identities=14% Similarity=0.122 Sum_probs=89.9
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcC----------CCCCe
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARG----------LADKV 210 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~----------~~~~v 210 (380)
..++..+.+.+ +.+|||+|||+|.++..+++..+ .+|+++|+++.+++.|++++...+ ...++
T Consensus 95 ~~~l~~l~~~~-----g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v 169 (336)
T 2b25_A 95 NMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNV 169 (336)
T ss_dssp HHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCE
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCce
Confidence 34444455543 88999999999999999999753 799999999999999999987532 33589
Q ss_pred EEEEcCCCCC--CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh
Q 016921 211 SFQVGDALQQ--PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC 288 (380)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (380)
+++++|+.+. ++++++||+|++.. +++..+++++.++|||||.+++.... ...+.... ..+....
T Consensus 170 ~~~~~d~~~~~~~~~~~~fD~V~~~~-----~~~~~~l~~~~~~LkpgG~lv~~~~~-------~~~~~~~~-~~l~~~~ 236 (336)
T 2b25_A 170 DFIHKDISGATEDIKSLTFDAVALDM-----LNPHVTLPVFYPHLKHGGVCAVYVVN-------ITQVIELL-DGIRTCE 236 (336)
T ss_dssp EEEESCTTCCC-------EEEEEECS-----SSTTTTHHHHGGGEEEEEEEEEEESS-------HHHHHHHH-HHHHHHT
T ss_pred EEEECChHHcccccCCCCeeEEEECC-----CCHHHHHHHHHHhcCCCcEEEEEeCC-------HHHHHHHH-HHHHhcC
Confidence 9999999886 45667899999843 34455899999999999999987632 11111111 1111110
Q ss_pred h--------ccCCCCC------CCHHHHHHHHHhCCCcEEEEEecC
Q 016921 289 D--------AYYLPAW------CSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 289 ~--------~~~~~~~------~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
. ......| ....++...|+++||+++++.+..
T Consensus 237 ~~~~~~~~~~~~~~~w~~~~~~~~~g~y~~~l~~aGF~~v~~~~~~ 282 (336)
T 2b25_A 237 LALSCEKISEVIVRDWLVCLAKQKNGILAQKVESKINTDVQLDSQE 282 (336)
T ss_dssp CCEEEEEEECCCCCCEEECC--------------------------
T ss_pred CCcccceEEEecccceEEEeecccccchhhhhcccccccccccccc
Confidence 0 0000111 111288899999999999876655
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-15 Score=128.18 Aligned_cols=119 Identities=13% Similarity=0.050 Sum_probs=94.1
Q ss_pred HHHHHHHHcC-CCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAG-VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~-~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+.+.++..+. .. ++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+++.++.+|+.+
T Consensus 18 ~~~~~~~~l~~~~-----~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 92 (177)
T 2esr_A 18 VRGAIFNMIGPYF-----NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAER 92 (177)
T ss_dssp CHHHHHHHHCSCC-----CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHH
T ss_pred HHHHHHHHHHhhc-----CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHH
Confidence 4445555554 22 37899999999999999999873469999999999999999999888876789999999877
Q ss_pred C-CCCCCCccEEEeccccCCCCCHHHHHHHHH--HhcCCCcEEEEEecc
Q 016921 220 Q-PFPDGQFDLVWSMESGEHMPDKSKFVSELA--RVTAPAGTIIIVTWC 265 (380)
Q Consensus 220 ~-~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~--r~LkpgG~l~~~~~~ 265 (380)
. +..+++||+|++...++ .......++.+. ++|+|||.+++....
T Consensus 93 ~~~~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 140 (177)
T 2esr_A 93 AIDCLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVCETDK 140 (177)
T ss_dssp HHHHBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred hHHhhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEEEECC
Confidence 3 33346799999876542 234567777777 999999999998754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-14 Score=136.17 Aligned_cols=102 Identities=24% Similarity=0.256 Sum_probs=89.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES--- 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~--- 235 (380)
+.+|||||||+|.++..+++....+|+|+|+| .+++.|++++...++.++++++.+|+.++++++++||+|++...
T Consensus 39 ~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~~~ 117 (328)
T 1g6q_1 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred CCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCchhh
Confidence 78999999999999999998633499999999 59999999999988888899999999998887789999998744
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
+.+..+...++.++.++|||||.++.
T Consensus 118 l~~~~~~~~~l~~~~~~LkpgG~li~ 143 (328)
T 1g6q_1 118 LLYESMMDTVLYARDHYLVEGGLIFP 143 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccHHHHHHHHHHHHhhcCCCeEEEE
Confidence 44446688999999999999999974
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.3e-14 Score=128.99 Aligned_cols=139 Identities=12% Similarity=0.101 Sum_probs=100.4
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---CCCCCCCccEEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---QPFPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~V~ 231 (380)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+.+.+... .++.++++|+.+ +++.+++||+|+
T Consensus 76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~---~~v~~~~~d~~~~~~~~~~~~~~D~V~ 152 (233)
T 2ipx_A 76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR---TNIIPVIEDARHPHKYRMLIAMVDVIF 152 (233)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC---TTEEEECSCTTCGGGGGGGCCCEEEEE
T ss_pred CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc---CCeEEEEcccCChhhhcccCCcEEEEE
Confidence 358899999999999999999986 379999999999988888777664 579999999987 344568999999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCC
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSL 311 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf 311 (380)
+... .......++.++.++|||||++++........ ..... ... + ..+ .++|+++||
T Consensus 153 ~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~~~~~~~~----~~~~~--~~~-------------~-~~~-~~~l~~~Gf 209 (233)
T 2ipx_A 153 ADVA--QPDQTRIVALNAHTFLRNGGHFVISIKANCID----STASA--EAV-------------F-ASE-VKKMQQENM 209 (233)
T ss_dssp ECCC--CTTHHHHHHHHHHHHEEEEEEEEEEEEHHHHC----SSSCH--HHH-------------H-HHH-HHTTGGGTE
T ss_pred EcCC--CccHHHHHHHHHHHHcCCCeEEEEEEcccccc----cCCCH--HHH-------------H-HHH-HHHHHHCCC
Confidence 8544 22223556889999999999999954311000 00000 000 0 123 488899999
Q ss_pred cEEEEEecCC
Q 016921 312 EDIKAEDWSQ 321 (380)
Q Consensus 312 ~~v~~~~~~~ 321 (380)
++++...+..
T Consensus 210 ~~~~~~~~~~ 219 (233)
T 2ipx_A 210 KPQEQLTLEP 219 (233)
T ss_dssp EEEEEEECTT
T ss_pred ceEEEEecCC
Confidence 9998766543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-15 Score=128.02 Aligned_cols=102 Identities=11% Similarity=0.175 Sum_probs=88.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..++... +++|+++|+|+.|++.+++++...|...++.+ .|.... .+.++||+|++..++|
T Consensus 50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~-~~~~~~DvVLa~k~LH 126 (200)
T 3fzg_A 50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESD-VYKGTYDVVFLLKMLP 126 (200)
T ss_dssp CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHH-HTTSEEEEEEEETCHH
T ss_pred CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccccc-CCCCCcChhhHhhHHH
Confidence 7899999999999999998765 67999999999999999999998887656666 565443 3568899999999999
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++++.+..+.++++.|+|||.++-.+
T Consensus 127 lL~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 127 VLKQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp HHHHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred hhhhhHHHHHHHHHHhCCCCEEEEeC
Confidence 99666778889999999999988866
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-14 Score=130.35 Aligned_cols=135 Identities=13% Similarity=0.071 Sum_probs=100.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCC-EEEEEeC-CHHHHHHHHHHH-----HHcCCC----CCeEEEEcCCCCCC--C--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITL-SPVQAQRANALA-----AARGLA----DKVSFQVGDALQQP--F-- 222 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~-s~~~~~~a~~~~-----~~~~~~----~~v~~~~~d~~~~~--~-- 222 (380)
++.+|||||||+|.++..+++. +. +|+|+|+ |+.+++.+++++ ...++. +++.+...|..+.. +
T Consensus 79 ~~~~vLDlG~G~G~~~~~~a~~-~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 157 (281)
T 3bzb_A 79 AGKTVCELGAGAGLVSIVAFLA-GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR 157 (281)
T ss_dssp TTCEEEETTCTTSHHHHHHHHT-TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred CCCeEEEecccccHHHHHHHHc-CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence 3789999999999999998886 55 9999999 899999999998 555543 47888877765531 1
Q ss_pred --CCCCccEEEeccccCCCCCHHHHHHHHHHhcC---C--CcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCC
Q 016921 223 --PDGQFDLVWSMESGEHMPDKSKFVSELARVTA---P--AGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPA 295 (380)
Q Consensus 223 --~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~Lk---p--gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (380)
++++||+|++..+++|.++...+++.+.++|+ | ||.+++....... .+
T Consensus 158 ~~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~~~~--------------~~----------- 212 (281)
T 3bzb_A 158 CTGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALPANDPTAVALVTFTHHRP--------------HL----------- 212 (281)
T ss_dssp HHSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCTTTCTTCEEEEEECC------------------------------
T ss_pred hccCCCCCEEEEeCcccChHHHHHHHHHHHHHhcccCCCCCCEEEEEEEeeec--------------cc-----------
Confidence 35789999999999999999999999999999 9 9998775321100 00
Q ss_pred CCCHHHHHHHHHhCC-CcEEEEEe
Q 016921 296 WCSTADYVKLLQSLS-LEDIKAED 318 (380)
Q Consensus 296 ~~~~~~~~~ll~~aG-f~~v~~~~ 318 (380)
.....++.+.++++| |+++.+..
T Consensus 213 ~~~~~~~~~~l~~~G~f~v~~~~~ 236 (281)
T 3bzb_A 213 AERDLAFFRLVNADGALIAEPWLS 236 (281)
T ss_dssp ---CTHHHHHHHHSTTEEEEEEEC
T ss_pred chhHHHHHHHHHhcCCEEEEEecc
Confidence 011245667889999 99887754
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.5e-14 Score=128.38 Aligned_cols=109 Identities=15% Similarity=0.137 Sum_probs=91.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.+..++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....+ ++.++.+|+.+.
T Consensus 58 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~---~v~~~~~d~~~~ 128 (231)
T 1vbf_A 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYYN---NIKLILGDGTLG 128 (231)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTCS---SEEEEESCGGGC
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCCCCHHHHHHHHH-cCEEEEEeCCHHHHHHHHHHHhhcC---CeEEEECCcccc
Confidence 4556666665543 889999999999999999997 5899999999999999999886544 799999999873
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..++++||+|++..+++|+.+ ++.++|||||++++...
T Consensus 129 ~~~~~~fD~v~~~~~~~~~~~------~~~~~L~pgG~l~~~~~ 166 (231)
T 1vbf_A 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILPIG 166 (231)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred cccCCCccEEEECCcHHHHHH------HHHHHcCCCcEEEEEEc
Confidence 324678999999999999863 68999999999999864
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=126.20 Aligned_cols=107 Identities=16% Similarity=0.019 Sum_probs=89.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.|++++...++.++++++++|+.+.. .++++||+|++.
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~ 123 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 123 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEEC
Confidence 3789999999999999998885347999999999999999999988887678999999987732 226789999998
Q ss_pred cccCCCCCHHHHHHHH--HHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPDKSKFVSEL--ARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~--~r~LkpgG~l~~~~~~ 265 (380)
..++ ..+....++.+ .++|+|||.+++....
T Consensus 124 ~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~~~~~ 156 (187)
T 2fhp_A 124 PPYA-KQEIVSQLEKMLERQLLTNEAVIVCETDK 156 (187)
T ss_dssp CCGG-GCCHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred CCCC-chhHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence 7643 45667778887 8899999999997644
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=125.91 Aligned_cols=112 Identities=21% Similarity=0.303 Sum_probs=93.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
.+..++..+.+.+ +.+|||||||+|.++..+++..+ .+|+++|+++.+++.+++++...++. ++.+..+|+.
T Consensus 65 ~~~~~~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~~ 138 (215)
T 2yxe_A 65 MVGMMCELLDLKP-----GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYD-NVIVIVGDGT 138 (215)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCT-TEEEEESCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CeEEEECCcc
Confidence 3445555555443 88999999999999999999864 79999999999999999999877764 6999999986
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.....+++||+|++..+++|+. +++.++|||||++++...
T Consensus 139 ~~~~~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~lv~~~~ 178 (215)
T 2yxe_A 139 LGYEPLAPYDRIYTTAAGPKIP------EPLIRQLKDGGKLLMPVG 178 (215)
T ss_dssp GCCGGGCCEEEEEESSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred cCCCCCCCeeEEEECCchHHHH------HHHHHHcCCCcEEEEEEC
Confidence 5322357899999999999986 488999999999999864
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=128.62 Aligned_cols=104 Identities=12% Similarity=0.027 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|++++...++ .+++++++|+.+ ++..+++||+|++... +
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~-~~v~~~~~D~~~~~~~~~~~fD~V~~~~p-~ 132 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPP-F 132 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCS-S
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHHHhhcCCCCCEEEECCC-C
Confidence 789999999999999988776445999999999999999999988887 689999999877 4555678999998766 3
Q ss_pred CCCCHHHHHHHHHH--hcCCCcEEEEEec
Q 016921 238 HMPDKSKFVSELAR--VTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~~~~~ 264 (380)
+..+...+++.+.+ +|+|||.+++...
T Consensus 133 ~~~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 133 RRGLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred CCCcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 45677888888876 5999999998764
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=138.61 Aligned_cols=119 Identities=15% Similarity=0.189 Sum_probs=95.9
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHH-------HHHHHHcCCC-CCe
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRA-------NALAAARGLA-DKV 210 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a-------~~~~~~~~~~-~~v 210 (380)
..+..++..+.+.. +.+|||||||+|.++..+++..+ .+|+|+|+++.+++.| ++++...|+. .++
T Consensus 229 ~~v~~ml~~l~l~~-----g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV 303 (433)
T 1u2z_A 229 NFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNV 303 (433)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCE
T ss_pred HHHHHHHHhcCCCC-----CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCce
Confidence 35566777766554 89999999999999999999764 5899999999999988 8888877753 689
Q ss_pred EEEEcCCCCC--CC--CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 211 SFQVGDALQQ--PF--PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 211 ~~~~~d~~~~--~~--~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++++|.... ++ ..++||+|++...+ +.++...+++++.++|||||+|++.+.
T Consensus 304 ~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l-~~~d~~~~L~el~r~LKpGG~lVi~d~ 360 (433)
T 1u2z_A 304 EFSLKKSFVDNNRVAELIPQCDVILVNNFL-FDEDLNKKVEKILQTAKVGCKIISLKS 360 (433)
T ss_dssp EEEESSCSTTCHHHHHHGGGCSEEEECCTT-CCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred EEEEcCccccccccccccCCCCEEEEeCcc-ccccHHHHHHHHHHhCCCCeEEEEeec
Confidence 9999865432 12 24789999987666 447788899999999999999999863
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=131.04 Aligned_cols=113 Identities=16% Similarity=0.238 Sum_probs=96.3
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc-C-CCCCeEEEEcCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR-G-LADKVSFQVGDA 217 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~-~-~~~~v~~~~~d~ 217 (380)
+..++..+.+.+ +.+|||+|||+|.++..+++.. +.+|+++|+++.+++.|++++... + +..++.++++|+
T Consensus 88 ~~~i~~~~~~~~-----~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~ 162 (280)
T 1i9g_A 88 AAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL 162 (280)
T ss_dssp HHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred HHHHHHHcCCCC-----CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence 345556665554 8899999999999999999864 579999999999999999998876 4 456899999999
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+.++++++||+|++ +++++..+++++.++|+|||++++...
T Consensus 163 ~~~~~~~~~~D~v~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~ 204 (280)
T 1i9g_A 163 ADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYVA 204 (280)
T ss_dssp GGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred HhcCCCCCceeEEEE-----CCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence 988777889999998 456777899999999999999999873
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.7e-14 Score=136.18 Aligned_cols=103 Identities=25% Similarity=0.328 Sum_probs=90.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++....+|+|+|+|+ +++.|+++++..++.++++++.+|+++++++ ++||+|++..+++
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~~~~~ 127 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLP-EQVDIIISEPMGY 127 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEEECCCBT
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCC-CceeEEEEeCchh
Confidence 3889999999999999999986345999999996 8899999999888878999999999998765 6899999998888
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEE
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
|+. +....+.++.++|||||.+++.
T Consensus 128 ~~~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 128 MLFNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp TBTTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred cCChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 874 4567888999999999999864
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=127.58 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=91.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. + ..+++||+|++...
T Consensus 72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~~~ 151 (232)
T 3ntv_A 72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFIDAA 151 (232)
T ss_dssp CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEETT
T ss_pred CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEcCc
Confidence 7899999999999999999955 7899999999999999999999998877999999999775 3 23689999997643
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
..+...+++++.++|||||+|++.+...
T Consensus 152 ---~~~~~~~l~~~~~~LkpgG~lv~d~~~~ 179 (232)
T 3ntv_A 152 ---KAQSKKFFEIYTPLLKHQGLVITDNVLY 179 (232)
T ss_dssp ---SSSHHHHHHHHGGGEEEEEEEEEECTTG
T ss_pred ---HHHHHHHHHHHHHhcCCCeEEEEeeCCc
Confidence 4567889999999999999998866443
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=5.7e-15 Score=134.06 Aligned_cols=104 Identities=17% Similarity=0.240 Sum_probs=85.0
Q ss_pred CCEEEEECCCcCh----HHHHHHHHcC-----CEEEEEeCCHHHHHHHHHHHHH-----------------------cC-
Q 016921 159 PKNVVDVGCGIGG----SSRYLAKKFG-----AKCQGITLSPVQAQRANALAAA-----------------------RG- 205 (380)
Q Consensus 159 ~~~vLDiGcGtG~----~~~~l~~~~~-----~~v~giD~s~~~~~~a~~~~~~-----------------------~~- 205 (380)
+.+|||+|||||. ++..+++..+ .+|+|+|+|+.|++.|++.... .+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 6799999999998 5666666532 5899999999999999986310 00
Q ss_pred ------CCCCeEEEEcCCCCCCCC-CCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEE
Q 016921 206 ------LADKVSFQVGDALQQPFP-DGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 206 ------~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~ 262 (380)
+..+|.|.++|+.+.+++ .++||+|+|.+++.|+++. .+++++++++|+|||+|++.
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 013699999999886665 5789999999999999665 78999999999999999984
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.4e-14 Score=131.84 Aligned_cols=152 Identities=11% Similarity=0.080 Sum_probs=102.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF-QVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~ 219 (380)
.+..++..+.+.. ++.+|||||||||.++..+++....+|+|+|+|+.|++.+.+.. +++.. ...|+..
T Consensus 72 Kl~~~l~~~~~~~----~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~------~rv~~~~~~ni~~ 141 (291)
T 3hp7_A 72 KLEKALAVFNLSV----EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD------DRVRSMEQYNFRY 141 (291)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC------TTEEEECSCCGGG
T ss_pred HHHHHHHhcCCCc----cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cccceecccCcee
Confidence 4556677666542 47899999999999999998873459999999999998754321 23432 2344444
Q ss_pred CC---CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC-C-
Q 016921 220 QP---FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL-P- 294 (380)
Q Consensus 220 ~~---~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 294 (380)
++ ++..+||+|++..+++++ ..++.+++++|||||.+++.. .+.+......+. ..+. .
T Consensus 142 l~~~~l~~~~fD~v~~d~sf~sl---~~vL~e~~rvLkpGG~lv~lv--kPqfe~~~~~~~------------~~G~vrd 204 (291)
T 3hp7_A 142 AEPVDFTEGLPSFASIDVSFISL---NLILPALAKILVDGGQVVALV--KPQFEAGREQIG------------KNGIVRE 204 (291)
T ss_dssp CCGGGCTTCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--CGGGTSCGGGCC-------------CCCCCC
T ss_pred cchhhCCCCCCCEEEEEeeHhhH---HHHHHHHHHHcCcCCEEEEEE--CcccccChhhcC------------CCCccCC
Confidence 32 344569999998777654 789999999999999999973 111111110000 0000 0
Q ss_pred ---CCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 295 ---AWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 295 ---~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
+....+++.++++++||.+..+...
T Consensus 205 ~~~~~~~~~~v~~~~~~~Gf~v~~~~~s 232 (291)
T 3hp7_A 205 SSIHEKVLETVTAFAVDYGFSVKGLDFS 232 (291)
T ss_dssp HHHHHHHHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHCCCEEEEEEEC
Confidence 0135688999999999998877654
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=3.8e-14 Score=125.04 Aligned_cols=104 Identities=20% Similarity=0.299 Sum_probs=89.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC---CCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP---DGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~---~~~fD~V~ 231 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. + ++ .++||+|+
T Consensus 59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~ 138 (223)
T 3duw_A 59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIF 138 (223)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEE
T ss_pred CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEE
Confidence 7899999999999999999976 5799999999999999999999989887899999998653 1 11 26799999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+... ..+...+++++.++|||||.+++.+..
T Consensus 139 ~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 139 IDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp ECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 8654 345678999999999999999887654
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=2.4e-14 Score=125.64 Aligned_cols=125 Identities=16% Similarity=0.111 Sum_probs=103.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCC-CccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDG-QFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~-~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++++..+|..+. ++.+ +||+|++.++
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~-l~~~~~~D~IviaG~ 93 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA-FEETDQVSVITIAGM 93 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG-CCGGGCCCEEEEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh-cccCcCCCEEEEcCC
Confidence 47899999999999999999975 4589999999999999999999999988899999998642 2333 7999987654
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
-. .-...++..+.+.|+++|++++.-. ...+.++++|++.||.+++
T Consensus 94 Gg--~~i~~Il~~~~~~L~~~~~lVlq~~--------------------------------~~~~~vr~~L~~~Gf~i~~ 139 (225)
T 3kr9_A 94 GG--RLIARILEEGLGKLANVERLILQPN--------------------------------NREDDLRIWLQDHGFQIVA 139 (225)
T ss_dssp CH--HHHHHHHHHTGGGCTTCCEEEEEES--------------------------------SCHHHHHHHHHHTTEEEEE
T ss_pred Ch--HHHHHHHHHHHHHhCCCCEEEEECC--------------------------------CCHHHHHHHHHHCCCEEEE
Confidence 32 1246789999999999999998642 1357889999999999887
Q ss_pred EE
Q 016921 316 AE 317 (380)
Q Consensus 316 ~~ 317 (380)
..
T Consensus 140 e~ 141 (225)
T 3kr9_A 140 ES 141 (225)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.1e-14 Score=127.26 Aligned_cols=126 Identities=12% Similarity=0.065 Sum_probs=104.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...++.+++.+.++|..+...++++||+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 47899999999999999999874 35899999999999999999999999888999999988755443469999875543
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
. .-...++.+..+.|+++|+|++.-. ...+.++++|.+.||.+++.
T Consensus 101 g--~lI~~IL~~~~~~L~~~~~lIlq~~--------------------------------~~~~~lr~~L~~~Gf~i~~E 146 (244)
T 3gnl_A 101 G--TLIRTILEEGAAKLAGVTKLILQPN--------------------------------IAAWQLREWSEQNNWLITSE 146 (244)
T ss_dssp H--HHHHHHHHHTGGGGTTCCEEEEEES--------------------------------SCHHHHHHHHHHHTEEEEEE
T ss_pred h--HHHHHHHHHHHHHhCCCCEEEEEcC--------------------------------CChHHHHHHHHHCCCEEEEE
Confidence 2 1246788899999999999999752 13578899999999998765
Q ss_pred E
Q 016921 317 E 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 147 ~ 147 (244)
T 3gnl_A 147 A 147 (244)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=6.2e-15 Score=147.96 Aligned_cols=105 Identities=29% Similarity=0.352 Sum_probs=91.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l 236 (380)
+.+|||||||+|.++..||+. |+.|+|||+++.+++.|+.++.+.+. .+++|.+++++++ .+++++||+|+|..++
T Consensus 67 ~~~vLDvGCG~G~~~~~la~~-ga~V~giD~~~~~i~~a~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~~ 144 (569)
T 4azs_A 67 PLNVLDLGCAQGFFSLSLASK-GATIVGIDFQQENINVCRALAEENPD-FAAEFRVGRIEEVIAALEEGEFDLAIGLSVF 144 (569)
T ss_dssp CCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHTSTT-SEEEEEECCHHHHHHHCCTTSCSEEEEESCH
T ss_pred CCeEEEECCCCcHHHHHHHhC-CCEEEEECCCHHHHHHHHHHHHhcCC-CceEEEECCHHHHhhhccCCCccEEEECcch
Confidence 789999999999999999997 99999999999999999999987764 2699999999887 4567899999999999
Q ss_pred CCCCCHHH--HHHHHHHhcCCCcEEEEEecc
Q 016921 237 EHMPDKSK--FVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 237 ~~~~~~~~--~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+|++|+.. .+..+.+.|+++|..++..+.
T Consensus 145 ehv~~~~~~~~~~~~~~tl~~~~~~~~~~~~ 175 (569)
T 4azs_A 145 HHIVHLHGIDEVKRLLSRLADVTQAVILELA 175 (569)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred hcCCCHHHHHHHHHHHHHhccccceeeEEec
Confidence 99988753 345678888999887776654
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-13 Score=121.25 Aligned_cols=138 Identities=14% Similarity=0.162 Sum_probs=96.4
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~ 231 (380)
.++.+|||+|||+|.++..+++.. ..+|+|+|+++.|++...+.+... .++.++++|+.... ...++||+|+
T Consensus 75 ~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r---~nv~~i~~Da~~~~~~~~~~~~~D~I~ 151 (232)
T 3id6_C 75 RKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR---PNIFPLLADARFPQSYKSVVENVDVLY 151 (232)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC---TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred CCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCeEEEEcccccchhhhccccceEEEE
Confidence 469999999999999999999875 469999999999976555544443 47999999998642 1246899999
Q ss_pred eccccCCCCCHHHHH-HHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 232 SMESGEHMPDKSKFV-SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+.... ++....+ ..+.+.|||||+|++..-... ... ....--..++..+.|+++|
T Consensus 152 ~d~a~---~~~~~il~~~~~~~LkpGG~lvisik~~~----------------~d~-----t~~~~e~~~~~~~~L~~~g 207 (232)
T 3id6_C 152 VDIAQ---PDQTDIAIYNAKFFLKVNGDMLLVIKARS----------------IDV-----TKDPKEIYKTEVEKLENSN 207 (232)
T ss_dssp ECCCC---TTHHHHHHHHHHHHEEEEEEEEEEEC----------------------------CCSSSSTTHHHHHHHHTT
T ss_pred ecCCC---hhHHHHHHHHHHHhCCCCeEEEEEEccCC----------------ccc-----CCCHHHHHHHHHHHHHHCC
Confidence 87543 4555544 566669999999999742110 000 0000011244567888999
Q ss_pred CcEEEEEecCC
Q 016921 311 LEDIKAEDWSQ 321 (380)
Q Consensus 311 f~~v~~~~~~~ 321 (380)
|++++...+..
T Consensus 208 f~~~~~~~l~p 218 (232)
T 3id6_C 208 FETIQIINLDP 218 (232)
T ss_dssp EEEEEEEECTT
T ss_pred CEEEEEeccCC
Confidence 99998876643
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=129.32 Aligned_cols=107 Identities=16% Similarity=0.210 Sum_probs=91.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CC-----CCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FP-----DGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-----~~~fD~V 230 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+.. .. +++||+|
T Consensus 61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V 140 (242)
T 3r3h_A 61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFI 140 (242)
T ss_dssp CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEE
T ss_pred cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEE
Confidence 7799999999999999999865 57999999999999999999999998889999999987642 11 4789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCC
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~ 268 (380)
++... ..+...+++++.++|||||.|++.+.....
T Consensus 141 ~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~~~g 175 (242)
T 3r3h_A 141 FIDAD---KTNYLNYYELALKLVTPKGLIAIDNIFWDG 175 (242)
T ss_dssp EEESC---GGGHHHHHHHHHHHEEEEEEEEEECSSSSS
T ss_pred EEcCC---hHHhHHHHHHHHHhcCCCeEEEEECCccCC
Confidence 98654 346778999999999999999998765443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.9e-14 Score=124.64 Aligned_cols=103 Identities=23% Similarity=0.326 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. +..++ ||+|++...
T Consensus 57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~~ 135 (210)
T 3c3p_A 57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDCD 135 (210)
T ss_dssp CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEETT
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcCC
Confidence 6799999999999999999875 5799999999999999999998888767899999998764 43346 999998732
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
..+...+++++.++|||||.+++.+..
T Consensus 136 ---~~~~~~~l~~~~~~LkpgG~lv~~~~~ 162 (210)
T 3c3p_A 136 ---VFNGADVLERMNRCLAKNALLIAVNAL 162 (210)
T ss_dssp ---TSCHHHHHHHHGGGEEEEEEEEEESSS
T ss_pred ---hhhhHHHHHHHHHhcCCCeEEEEECcc
Confidence 457789999999999999999986643
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-14 Score=134.30 Aligned_cols=137 Identities=16% Similarity=0.231 Sum_probs=102.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCCCC--CCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQPF--PDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~--~~~~fD~V~ 231 (380)
++.+|||||||+|.++..+++.. ..+|+++|+++.+++.+++++.. ....++++++.+|+.+.+. ++++||+|+
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvIi 174 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVVI 174 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEEE
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEEE
Confidence 37899999999999999999865 57999999999999999998742 1223589999999877542 468999999
Q ss_pred eccccCCCCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHH
Q 016921 232 SMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307 (380)
Q Consensus 232 ~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 307 (380)
+.....+.+.. .++++++.++|||||++++..... . .. .....++.+.|+
T Consensus 175 ~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~-----~---~~------------------~~~~~~~~~~l~ 228 (304)
T 3bwc_A 175 IDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESI-----W---LD------------------LELIEKMSRFIR 228 (304)
T ss_dssp EECC---------CCHHHHHHHHHHEEEEEEEEEEECCT-----T---TC------------------HHHHHHHHHHHH
T ss_pred ECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCc-----c---cc------------------hHHHHHHHHHHH
Confidence 97655443322 589999999999999999975211 0 00 012467888999
Q ss_pred hCCCcEEEEEecC
Q 016921 308 SLSLEDIKAEDWS 320 (380)
Q Consensus 308 ~aGf~~v~~~~~~ 320 (380)
++||..+......
T Consensus 229 ~~GF~~v~~~~~~ 241 (304)
T 3bwc_A 229 ETGFASVQYALMH 241 (304)
T ss_dssp HHTCSEEEEEECC
T ss_pred hCCCCcEEEEEee
Confidence 9999988776543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-13 Score=123.09 Aligned_cols=110 Identities=13% Similarity=0.141 Sum_probs=94.7
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
..++..+.+.+ +.+|||+|||+|.++..+++. +.+|+++|+++.+++.|+++....++..++.+..+|+.+...
T Consensus 81 ~~~~~~~~~~~-----~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 154 (248)
T 2yvl_A 81 FYIALKLNLNK-----EKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV 154 (248)
T ss_dssp HHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC
T ss_pred HHHHHhcCCCC-----CCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc
Confidence 34455555544 889999999999999999998 889999999999999999999888876789999999988543
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++++||+|++ +.+++..+++++.++|+|||.+++..
T Consensus 155 ~~~~~D~v~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~ 190 (248)
T 2yvl_A 155 PEGIFHAAFV-----DVREPWHYLEKVHKSLMEGAPVGFLL 190 (248)
T ss_dssp CTTCBSEEEE-----CSSCGGGGHHHHHHHBCTTCEEEEEE
T ss_pred CCCcccEEEE-----CCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence 5678999997 45677789999999999999999987
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.5e-14 Score=124.94 Aligned_cols=104 Identities=22% Similarity=0.314 Sum_probs=91.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCC--CCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFP--DGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~--~~~fD~V~~~~ 234 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++..++.++.+|+.+. +.. +++||+|++..
T Consensus 55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~ 134 (233)
T 2gpy_A 55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFIDA 134 (233)
T ss_dssp CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEG
T ss_pred CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEECC
Confidence 7899999999999999999987 6899999999999999999999888877899999999874 322 57899999876
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.. .+...+++++.++|+|||.+++.++.
T Consensus 135 ~~---~~~~~~l~~~~~~L~pgG~lv~~~~~ 162 (233)
T 2gpy_A 135 AK---GQYRRFFDMYSPMVRPGGLILSDNVL 162 (233)
T ss_dssp GG---SCHHHHHHHHGGGEEEEEEEEEETTT
T ss_pred CH---HHHHHHHHHHHHHcCCCeEEEEEcCC
Confidence 64 37789999999999999999997653
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-14 Score=133.82 Aligned_cols=104 Identities=20% Similarity=0.220 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--CeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--KVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
+.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++...++.. +++|+.+|+.+ ++++++||+|+++..
T Consensus 223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~npp 301 (375)
T 4dcm_A 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCNPP 301 (375)
T ss_dssp CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEECCC
T ss_pred CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEECCC
Confidence 6899999999999999999987 7899999999999999999998877643 58889999987 556789999999988
Q ss_pred cCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++... ...+++++.++|||||.+++..
T Consensus 302 fh~~~~~~~~~~~~~l~~~~~~LkpgG~l~iv~ 334 (375)
T 4dcm_A 302 FHQQHALTDNVAWEMFHHARRCLKINGELYIVA 334 (375)
T ss_dssp C-------CCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccCcccCHHHHHHHHHHHHHhCCCCcEEEEEE
Confidence 875321 2478999999999999999976
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-14 Score=128.50 Aligned_cols=106 Identities=16% Similarity=0.235 Sum_probs=89.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH---cCCCCCeEEEEcCCCCC-------CCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA---RGLADKVSFQVGDALQQ-------PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~-------~~~~~~ 226 (380)
++.+|||+|||+|.++..++++. +.+|+|+|+++.+++.|++++.. .++.+++.++++|+.+. ++++++
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~~ 115 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDEH 115 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTTC
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCCC
Confidence 47899999999999999999987 57999999999999999999887 77766899999999887 256789
Q ss_pred ccEEEeccccCC----------------C--CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEH----------------M--PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~----------------~--~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
||+|+++-.+.. . .+...+++.+.++|||||++++..
T Consensus 116 fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~ 170 (260)
T 2ozv_A 116 FHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLIS 170 (260)
T ss_dssp EEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEE
Confidence 999999732211 1 236789999999999999999864
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=9.2e-14 Score=122.82 Aligned_cols=101 Identities=20% Similarity=0.266 Sum_probs=86.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC--CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~--~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~~~fD~V~ 231 (380)
++.+|||||||+|..+..+++..+ .+|+++|+++.+++.+++++...+. ..++.++++|+...+.++++||+|+
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~i~ 156 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDAIH 156 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCEEE
Confidence 488999999999999999998753 6999999999999999999877553 3579999999987655567899999
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+...++++. +++.++|||||++++...
T Consensus 157 ~~~~~~~~~------~~~~~~LkpgG~lv~~~~ 183 (226)
T 1i1n_A 157 VGAAAPVVP------QALIDQLKPGGRLILPVG 183 (226)
T ss_dssp ECSBBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred ECCchHHHH------HHHHHhcCCCcEEEEEEe
Confidence 998887764 588999999999999764
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=121.88 Aligned_cols=137 Identities=17% Similarity=0.191 Sum_probs=99.6
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~ 231 (380)
.++.+|||+|||+|.++..+++.. +.+|+|+|+|+.+++.+++++... .++.++++|+.+.. ...++||+|+
T Consensus 72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~---~~v~~~~~d~~~~~~~~~~~~~~D~v~ 148 (227)
T 1g8a_A 72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVPKVDVIF 148 (227)
T ss_dssp CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCCCEEEEE
T ss_pred CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc---CCCEEEEccCCCcchhhcccCCceEEE
Confidence 358899999999999999999875 379999999999999998877543 58999999998732 1236899999
Q ss_pred eccccCCCCCH-HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 232 SMESGEHMPDK-SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 232 ~~~~l~~~~~~-~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
+... .++. ..+++++.++|||||.+++. +........ .... . ...+++.++ +++
T Consensus 149 ~~~~---~~~~~~~~l~~~~~~LkpgG~l~~~-~~~~~~~~~---~~~~--~--------------~~~~~l~~l-~~~- 203 (227)
T 1g8a_A 149 EDVA---QPTQAKILIDNAEVYLKRGGYGMIA-VKSRSIDVT---KEPE--Q--------------VFREVEREL-SEY- 203 (227)
T ss_dssp ECCC---STTHHHHHHHHHHHHEEEEEEEEEE-EEGGGTCTT---SCHH--H--------------HHHHHHHHH-HTT-
T ss_pred ECCC---CHhHHHHHHHHHHHhcCCCCEEEEE-EecCCCCCC---CChh--h--------------hhHHHHHHH-Hhh-
Confidence 7654 2343 34599999999999999997 322111100 0000 0 124566666 777
Q ss_pred CcEEEEEecCC
Q 016921 311 LEDIKAEDWSQ 321 (380)
Q Consensus 311 f~~v~~~~~~~ 321 (380)
|++++..++..
T Consensus 204 f~~~~~~~~~~ 214 (227)
T 1g8a_A 204 FEVIERLNLEP 214 (227)
T ss_dssp SEEEEEEECTT
T ss_pred ceeeeEeccCc
Confidence 99998877643
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=6.1e-14 Score=124.86 Aligned_cols=111 Identities=21% Similarity=0.341 Sum_probs=91.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++..++..+.+.+ +.+|||||||+|.++..+++..+.+|+++|+++.+++.|++++...++. ++.+..+|+ ..
T Consensus 79 ~~~~~~~~l~~~~-----~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~-~v~~~~~d~-~~ 151 (235)
T 1jg1_A 79 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVK-NVHVILGDG-SK 151 (235)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCG-GG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEECCc-cc
Confidence 4445555555543 8899999999999999999975589999999999999999999888774 599999997 33
Q ss_pred CCCC-CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~~-~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++++ .+||+|++..+++++.+ ++.+.|||||++++...
T Consensus 152 ~~~~~~~fD~Ii~~~~~~~~~~------~~~~~L~pgG~lvi~~~ 190 (235)
T 1jg1_A 152 GFPPKAPYDVIIVTAGAPKIPE------PLIEQLKIGGKLIIPVG 190 (235)
T ss_dssp CCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEEC
T ss_pred CCCCCCCccEEEECCcHHHHHH------HHHHhcCCCcEEEEEEe
Confidence 4444 35999999999988863 78999999999999764
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=125.06 Aligned_cols=105 Identities=17% Similarity=0.229 Sum_probs=89.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CC----CCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-FP----DGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~----~~~fD~V 230 (380)
+.+|||||||+|..+..+++.+ +.+|+++|+++.+++.|++++...++.++++++++|+.+. + +. .++||+|
T Consensus 65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v 144 (225)
T 3tr6_A 65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLI 144 (225)
T ss_dssp CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEE
T ss_pred CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEE
Confidence 7799999999999999999875 5799999999999999999999999877899999998653 1 11 1789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++... ..+...+++++.++|||||+|++.+...
T Consensus 145 ~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~~ 177 (225)
T 3tr6_A 145 YIDAD---KANTDLYYEESLKLLREGGLIAVDNVLR 177 (225)
T ss_dssp EECSC---GGGHHHHHHHHHHHEEEEEEEEEECSSG
T ss_pred EECCC---HHHHHHHHHHHHHhcCCCcEEEEeCCCc
Confidence 96543 3467889999999999999999987543
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.52 E-value=1e-13 Score=128.83 Aligned_cols=131 Identities=15% Similarity=0.160 Sum_probs=101.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...++. ++.++++|+.+++..+++||+|++.
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Il~d~P 196 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVL-NVILFHSSSLHIGELNVEFDKILLDAP 196 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCC-SEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCC-eEEEEECChhhcccccccCCEEEEeCC
Confidence 48899999999999999999876 479999999999999999999888874 7999999998876445789999983
Q ss_pred ----cccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCC
Q 016921 234 ----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYL 293 (380)
Q Consensus 234 ----~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (380)
.++.+.++. ..+++++.++|||||++++++......
T Consensus 197 csg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs~~~~------------------------ 252 (315)
T 1ixk_A 197 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPE------------------------ 252 (315)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGG------------------------
T ss_pred CCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCCCChH------------------------
Confidence 233332221 478999999999999999977421110
Q ss_pred CCCCCHHHHHHHHHhCCCcEEEE
Q 016921 294 PAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 294 ~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
-..+.+..++++.||+.+.+
T Consensus 253 ---Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 253 ---ENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp ---GTHHHHHHHHHHSSEEEECC
T ss_pred ---HhHHHHHHHHhcCCCEEecC
Confidence 12345667788889887754
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-14 Score=129.06 Aligned_cols=120 Identities=15% Similarity=0.130 Sum_probs=90.7
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH--c-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCC----
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--F-GAKCQGITLSPVQAQRANALAAAR---GLADK---- 209 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~--~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~---- 209 (380)
.++..++..+... ++.+|||+|||+|.++..+++. . +.+|+|+|+|+.+++.|++++... ++..+
T Consensus 38 ~l~~~~l~~~~~~-----~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~ 112 (250)
T 1o9g_A 38 EIFQRALARLPGD-----GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELER 112 (250)
T ss_dssp HHHHHHHHTSSCC-----SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccC-----CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhh
Confidence 4555555544322 3789999999999999999987 4 578999999999999999887654 33212
Q ss_pred ---------------------eE-------------EEEcCCCCCCC-----CCCCccEEEeccccCCCCC---------
Q 016921 210 ---------------------VS-------------FQVGDALQQPF-----PDGQFDLVWSMESGEHMPD--------- 241 (380)
Q Consensus 210 ---------------------v~-------------~~~~d~~~~~~-----~~~~fD~V~~~~~l~~~~~--------- 241 (380)
+. |.++|+.+... ..++||+|+++..+.+..+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~ 192 (250)
T 1o9g_A 113 REQSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQP 192 (250)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHH
T ss_pred hhhhhhcccccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccH
Confidence 56 99999887421 3458999999765544433
Q ss_pred HHHHHHHHHHhcCCCcEEEEEec
Q 016921 242 KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 242 ~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+++++.++|+|||++++...
T Consensus 193 ~~~~l~~~~~~LkpgG~l~~~~~ 215 (250)
T 1o9g_A 193 VAGLLRSLASALPAHAVIAVTDR 215 (250)
T ss_dssp HHHHHHHHHHHSCTTCEEEEEES
T ss_pred HHHHHHHHHHhcCCCcEEEEeCc
Confidence 35899999999999999999653
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.52 E-value=7.8e-15 Score=130.30 Aligned_cols=153 Identities=13% Similarity=0.095 Sum_probs=94.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~ 218 (380)
.+.+++..+.+.. ++.+|||||||||.++..+++. + .+|+|+|+|+.|++.++++.. ++... ..++.
T Consensus 24 kL~~~L~~~~~~~----~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~------~~~~~~~~~~~ 92 (232)
T 3opn_A 24 KLEKALKEFHLEI----NGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDE------RVVVMEQFNFR 92 (232)
T ss_dssp HHHHHHHHTTCCC----TTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCT------TEEEECSCCGG
T ss_pred HHHHHHHHcCCCC----CCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCc------cccccccceEE
Confidence 3456666665442 4779999999999999999987 5 599999999999998776432 22211 11111
Q ss_pred CC---CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCC-
Q 016921 219 QQ---PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP- 294 (380)
Q Consensus 219 ~~---~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 294 (380)
.. .++...||.+.+..++.++ ..++++++++|||||.+++.. . |..... ...+ .....+.
T Consensus 93 ~~~~~~~~~~~~d~~~~D~v~~~l---~~~l~~i~rvLkpgG~lv~~~--~----p~~e~~----~~~~---~~~G~~~d 156 (232)
T 3opn_A 93 NAVLADFEQGRPSFTSIDVSFISL---DLILPPLYEILEKNGEVAALI--K----PQFEAG----REQV---GKNGIIRD 156 (232)
T ss_dssp GCCGGGCCSCCCSEEEECCSSSCG---GGTHHHHHHHSCTTCEEEEEE--C----HHHHSC----HHHH---C-CCCCCC
T ss_pred EeCHhHcCcCCCCEEEEEEEhhhH---HHHHHHHHHhccCCCEEEEEE--C----cccccC----HHHh---CcCCeecC
Confidence 11 1111234555544444443 679999999999999999863 1 100000 0000 0000000
Q ss_pred ---CCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 295 ---AWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 295 ---~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
...+.+++.++++++||+++.+....
T Consensus 157 ~~~~~~~~~~l~~~l~~aGf~v~~~~~~p 185 (232)
T 3opn_A 157 PKVHQMTIEKVLKTATQLGFSVKGLTFSP 185 (232)
T ss_dssp HHHHHHHHHHHHHHHHHHTEEEEEEEECS
T ss_pred cchhHHHHHHHHHHHHHCCCEEEEEEEcc
Confidence 01367899999999999998876543
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.2e-14 Score=122.90 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=87.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCC----CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQP----FP 223 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~------~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~----~~ 223 (380)
++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...++ ..++.++.+|+.+.. ..
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 159 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEKKE 159 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccCcc
Confidence 488999999999999999998754 5999999999999999999887763 358999999998754 45
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.++||+|++...++++ ++++.+.|||||++++...
T Consensus 160 ~~~fD~I~~~~~~~~~------~~~~~~~LkpgG~lv~~~~ 194 (227)
T 2pbf_A 160 LGLFDAIHVGASASEL------PEILVDLLAENGKLIIPIE 194 (227)
T ss_dssp HCCEEEEEECSBBSSC------CHHHHHHEEEEEEEEEEEE
T ss_pred CCCcCEEEECCchHHH------HHHHHHhcCCCcEEEEEEc
Confidence 6789999999988876 4788999999999999764
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=124.87 Aligned_cols=96 Identities=28% Similarity=0.403 Sum_probs=84.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++. .++.+..+|+.++++++++||+|++..+.
T Consensus 85 ~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~------~~~~~~~~d~~~~~~~~~~fD~v~~~~~~ 158 (269)
T 1p91_A 85 KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVASSHRLPFSDTSMDAIIRIYAP 158 (269)
T ss_dssp TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC------CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence 37899999999999999999976 789999999999999998754 46899999999988888999999987653
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
. .++++.++|||||.+++.++..
T Consensus 159 ~-------~l~~~~~~L~pgG~l~~~~~~~ 181 (269)
T 1p91_A 159 C-------KAEELARVVKPGGWVITATPGP 181 (269)
T ss_dssp C-------CHHHHHHHEEEEEEEEEEEECT
T ss_pred h-------hHHHHHHhcCCCcEEEEEEcCH
Confidence 2 4899999999999999987543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.7e-13 Score=128.21 Aligned_cols=117 Identities=20% Similarity=0.154 Sum_probs=96.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+...++......+ +.+|||+|||+|.++..++... +.+++|+|+++.+++.|++++...++. +++|.++|+.
T Consensus 191 la~~l~~~~~~~~-----~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~-~i~~~~~D~~ 264 (354)
T 3tma_A 191 LAQALLRLADARP-----GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLS-WIRFLRADAR 264 (354)
T ss_dssp HHHHHHHHTTCCT-----TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCT-TCEEEECCGG
T ss_pred HHHHHHHHhCCCC-----CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCC-ceEEEeCChh
Confidence 4445556665544 7899999999999999999975 389999999999999999999999986 8999999999
Q ss_pred CCCCCCCCccEEEeccccCCC-C-------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHM-P-------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~-~-------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++.+.+.||+|+++-..... . ....+++++.++|||||.+++..
T Consensus 265 ~~~~~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t 317 (354)
T 3tma_A 265 HLPRFFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLT 317 (354)
T ss_dssp GGGGTCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEE
T ss_pred hCccccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence 987767789999996443221 1 12678999999999999999986
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-14 Score=125.33 Aligned_cols=104 Identities=17% Similarity=0.230 Sum_probs=89.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~ 229 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++.+|+.+. + + ++++||+
T Consensus 80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 159 (247)
T 1sui_A 80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDF 159 (247)
T ss_dssp CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSE
T ss_pred cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEE
Confidence 6799999999999999999986 6899999999999999999999888877899999998763 2 1 1578999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
|++... ..+...+++++.++|||||.|++.+..
T Consensus 160 V~~d~~---~~~~~~~l~~~~~~LkpGG~lv~d~~~ 192 (247)
T 1sui_A 160 IFVDAD---KDNYLNYHKRLIDLVKVGGVIGYDNTL 192 (247)
T ss_dssp EEECSC---STTHHHHHHHHHHHBCTTCCEEEECTT
T ss_pred EEEcCc---hHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 998654 346788999999999999999987643
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.51 E-value=5.4e-14 Score=137.77 Aligned_cols=117 Identities=23% Similarity=0.265 Sum_probs=95.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
..+.+.++..+... ++.+|||||||+|.++..+++....+|+|+|+|+ +++.|++++...++.++++++.+|+.
T Consensus 144 ~~~~~~il~~l~~~-----~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~ 217 (480)
T 3b3j_A 144 GTYQRAILQNHTDF-----KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVE 217 (480)
T ss_dssp HHHHHHHHHTGGGT-----TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTT
T ss_pred HHHHHHHHHhhhhc-----CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchh
Confidence 34455555555433 3789999999999999999885356999999998 99999999999898889999999999
Q ss_pred CCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEE
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+++++ ++||+|++..+++|+.+ ....+.++.++|||||.+++.
T Consensus 218 ~~~~~-~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li~~ 262 (480)
T 3b3j_A 218 EVSLP-EQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMFPT 262 (480)
T ss_dssp TCCCS-SCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEESC
T ss_pred hCccC-CCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEEEE
Confidence 87665 68999999877777643 356778899999999999853
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-14 Score=121.79 Aligned_cols=103 Identities=14% Similarity=0.095 Sum_probs=85.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C--CCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F--PDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~--~~~~fD~V~~~~ 234 (380)
+.+|||+|||+|.++..+++. +..|+|+|+|+.+++.|++++...++ +++++++|+.+. + . ..++||+|++..
T Consensus 42 ~~~vLD~GcG~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 42 RGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGL--GARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp CCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTC--CCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeCCCcCHHHHHHHHC-CCeEEEEeCCHHHHHHHHHHHHHcCC--ceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 789999999999999999987 66799999999999999999988776 799999998763 2 1 134899999987
Q ss_pred ccCCCCCHHHHHHHHH--HhcCCCcEEEEEeccC
Q 016921 235 SGEHMPDKSKFVSELA--RVTAPAGTIIIVTWCH 266 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~--r~LkpgG~l~~~~~~~ 266 (380)
.++ .+...+++.+. ++|||||.+++.....
T Consensus 119 ~~~--~~~~~~~~~~~~~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 119 PYA--MDLAALFGELLASGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CTT--SCTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred CCc--hhHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence 654 45566777777 9999999999987543
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=123.60 Aligned_cols=105 Identities=23% Similarity=0.429 Sum_probs=85.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--------CCCCCeEEEEcCCCC-CC--CCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--------GLADKVSFQVGDALQ-QP--FPDG 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--------~~~~~v~~~~~d~~~-~~--~~~~ 225 (380)
++.+|||||||+|.++..+++.. +..|+|+|+|+.+++.+++++... ++ .++.++.+|+.+ ++ ++.+
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~-~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGF-QNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTT-TTEEEEECCTTSCGGGTSCTT
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCC-CcEEEEeccHHHHHHHhcccc
Confidence 47899999999999999999986 569999999999999999988765 55 489999999987 45 6678
Q ss_pred CccEEEeccccCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++|.|++...-.+.... ..+++++.++|+|||.|++..
T Consensus 128 ~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~t 173 (246)
T 2vdv_E 128 QLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTIT 173 (246)
T ss_dssp CEEEEEEESCCCC------CSSCCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCEEEEECCCcccccchhHHhhccHHHHHHHHHHcCCCCEEEEEe
Confidence 99999864322111110 489999999999999999964
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=9.8e-14 Score=131.10 Aligned_cols=101 Identities=24% Similarity=0.234 Sum_probs=87.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec---cc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM---ES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~---~~ 235 (380)
+.+|||||||+|.++..+++....+|+++|.|+ +++.|++.++.+++.++|.++.+|++++.++ ++||+|++- ..
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~~~~~ 161 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELP-EQVDAIVSEWMGYG 161 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCS-SCEEEEECCCCBTT
T ss_pred CCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCC-ccccEEEeeccccc
Confidence 889999999999999888876346899999996 8899999999999999999999999998776 789999983 34
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
+.+-.....++....+.|||||.++-
T Consensus 162 l~~e~~l~~~l~a~~r~Lkp~G~~iP 187 (376)
T 4hc4_A 162 LLHESMLSSVLHARTKWLKEGGLLLP 187 (376)
T ss_dssp BTTTCSHHHHHHHHHHHEEEEEEEES
T ss_pred ccccchhhhHHHHHHhhCCCCceECC
Confidence 44445678899999999999999875
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.49 E-value=8.9e-14 Score=123.10 Aligned_cols=100 Identities=18% Similarity=0.293 Sum_probs=85.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC-------CEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEEcCCCCCCCCC-C
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG-------AKCQGITLSPVQAQRANALAAARGL----ADKVSFQVGDALQQPFPD-G 225 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~-------~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~~d~~~~~~~~-~ 225 (380)
++.+|||||||+|.++..+++..+ .+|+++|+++.+++.|++++...+. ..++.++.+|+.+ ++++ +
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~-~~~~~~ 162 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRK-GYPPNA 162 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGG-CCGGGC
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCccc-CCCcCC
Confidence 488999999999999999998654 5999999999999999998876541 2579999999987 4444 7
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+||+|++..+++++. +++.+.|||||++++...
T Consensus 163 ~fD~I~~~~~~~~~~------~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 163 PYNAIHVGAAAPDTP------TELINQLASGGRLIVPVG 195 (227)
T ss_dssp SEEEEEECSCBSSCC------HHHHHTEEEEEEEEEEES
T ss_pred CccEEEECCchHHHH------HHHHHHhcCCCEEEEEEe
Confidence 899999999998875 689999999999999764
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=8.2e-14 Score=117.61 Aligned_cols=95 Identities=22% Similarity=0.289 Sum_probs=83.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+|||+|||+|.++..+++.+ +.+++|+|+++ +++. .++.+.++|+.+.+ +++++|
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~-----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI-----------VGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC-----------TTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc-----------CcEEEEEcccccchhhhhhhccCCCCce
Confidence 47899999999999999999985 48999999999 6532 47999999998876 667899
Q ss_pred cEEEeccccCCCCCH-----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|++...+++..+. ..+++++.++|+|||.+++..+
T Consensus 90 D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~ 137 (180)
T 1ej0_A 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF 137 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 999999888887765 6899999999999999999875
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=128.19 Aligned_cols=105 Identities=15% Similarity=0.155 Sum_probs=86.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCC----CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPF----PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~----~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..++.. +++|+++|+|+.+++.|++++...++.. ++.++++|+.++.. ..++||+|++.
T Consensus 154 ~~~VLDlgcGtG~~sl~la~~-ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~d 232 (332)
T 2igt_A 154 PLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTD 232 (332)
T ss_dssp CCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEEC
T ss_pred CCcEEEcccccCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEEC
Confidence 789999999999999999986 7799999999999999999998888765 59999999877521 14689999984
Q ss_pred cc----------cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ES----------GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~----------l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-- +.+..+...+++++.++|+|||.+++...
T Consensus 233 PP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~ 273 (332)
T 2igt_A 233 PPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 273 (332)
T ss_dssp CCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEC
Confidence 21 12234567899999999999999877653
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=130.14 Aligned_cols=102 Identities=22% Similarity=0.278 Sum_probs=88.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.+++++...++ .+.++.+|+.+.+ +++||+|++...++
T Consensus 197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~--~~~~~~~d~~~~~--~~~fD~Iv~~~~~~ 272 (343)
T 2pjd_A 197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV--EGEVFASNVFSEV--KGRFDMIISNPPFH 272 (343)
T ss_dssp CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC--CCEEEECSTTTTC--CSCEEEEEECCCCC
T ss_pred CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC--CCEEEEccccccc--cCCeeEEEECCCcc
Confidence 6799999999999999999985 46999999999999999999988775 3678899987653 67999999998887
Q ss_pred CC-----CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HM-----PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~-----~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+. .+...+++++.++|||||.+++...
T Consensus 273 ~g~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 304 (343)
T 2pjd_A 273 DGMQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (343)
T ss_dssp SSSHHHHHHHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred cCccCCHHHHHHHHHHHHHhCCCCcEEEEEEc
Confidence 52 3467899999999999999999864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.1e-13 Score=123.42 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=80.8
Q ss_pred CCEEEEECCCcChHHHHHHHH----c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCC-CCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK----F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPD-GQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~----~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~-~~fD~ 229 (380)
+.+|||||||+|..+..+++. . +++|+|+|+++.+++.|+. ...+++++++|+.+. +... .+||+
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~------~~~~v~~~~gD~~~~~~l~~~~~~~fD~ 155 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS------DMENITLHQGDCSDLTTFEHLREMAHPL 155 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG------GCTTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc------cCCceEEEECcchhHHHHHhhccCCCCE
Confidence 679999999999999999987 2 6899999999999988761 236899999999884 4333 47999
Q ss_pred EEeccccCCCCCHHHHHHHHHH-hcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELAR-VTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r-~LkpgG~l~~~~~ 264 (380)
|++... | .+...++.++.+ +|||||+|++.+.
T Consensus 156 I~~d~~--~-~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 156 IFIDNA--H-ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EEEESS--C-SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred EEECCc--h-HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 998654 4 377889999997 9999999999764
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=6.3e-13 Score=126.50 Aligned_cols=127 Identities=26% Similarity=0.206 Sum_probs=101.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++++...|+.+++++.++|+.+++.++++||+|+++-.+
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~npPy 296 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNLPY 296 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEECCC
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECCCC
Confidence 38899999999999999999874 23899999999999999999999998778999999999998777899999996443
Q ss_pred CCC-------CC-HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHh
Q 016921 237 EHM-------PD-KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQS 308 (380)
Q Consensus 237 ~~~-------~~-~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 308 (380)
..- .+ ...+++++.++| ||.+++... +.+.+.+.+++
T Consensus 297 g~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~---------------------------------~~~~~~~~~~~ 341 (373)
T 3tm4_A 297 GLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITT---------------------------------EKKAIEEAIAE 341 (373)
T ss_dssp C------CCHHHHHHHHHHHHHHHE--EEEEEEEES---------------------------------CHHHHHHHHHH
T ss_pred CcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEEC---------------------------------CHHHHHHHHHH
Confidence 221 11 256788899988 555555441 35677788999
Q ss_pred CCCcEEEEEec
Q 016921 309 LSLEDIKAEDW 319 (380)
Q Consensus 309 aGf~~v~~~~~ 319 (380)
.||+..+...+
T Consensus 342 ~G~~~~~~~~~ 352 (373)
T 3tm4_A 342 NGFEIIHHRVI 352 (373)
T ss_dssp TTEEEEEEEEE
T ss_pred cCCEEEEEEEE
Confidence 99998776544
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.6e-13 Score=120.63 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=89.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCC--CCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPD--GQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~--~~fD~V 230 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. +..+ ++||+|
T Consensus 73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V 152 (232)
T 3cbg_A 73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLI 152 (232)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEE
T ss_pred CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEE
Confidence 6799999999999999999876 5799999999999999999998888877899999997542 2223 789999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
++... ..+...+++++.++|+|||.+++.+...
T Consensus 153 ~~d~~---~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 185 (232)
T 3cbg_A 153 FIDAD---KRNYPRYYEIGLNLLRRGGLMVIDNVLW 185 (232)
T ss_dssp EECSC---GGGHHHHHHHHHHTEEEEEEEEEECTTG
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEeCCCc
Confidence 98654 3467889999999999999999977543
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=120.23 Aligned_cols=104 Identities=20% Similarity=0.285 Sum_probs=88.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--------------
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------------- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------------- 221 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++..++.++.+|+.+. +
T Consensus 61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~ 140 (239)
T 2hnk_A 61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASD 140 (239)
T ss_dssp CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTT
T ss_pred cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccccc
Confidence 7899999999999999999986 5799999999999999999998888866799999997652 1
Q ss_pred CCC--CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 222 FPD--GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 222 ~~~--~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+++ ++||+|++... ..+...+++++.++|+|||++++.+..
T Consensus 141 f~~~~~~fD~I~~~~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 183 (239)
T 2hnk_A 141 FAFGPSSIDLFFLDAD---KENYPNYYPLILKLLKPGGLLIADNVL 183 (239)
T ss_dssp TCCSTTCEEEEEECSC---GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred ccCCCCCcCEEEEeCC---HHHHHHHHHHHHHHcCCCeEEEEEccc
Confidence 222 78999998754 345678999999999999999997643
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-14 Score=133.18 Aligned_cols=96 Identities=21% Similarity=0.265 Sum_probs=81.8
Q ss_pred CCEEEEECCC------cChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------C
Q 016921 159 PKNVVDVGCG------IGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------D 224 (380)
Q Consensus 159 ~~~vLDiGcG------tG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~ 224 (380)
+.+||||||| +|..+..+++.+ +++|+|+|+|+.|.. ..++++|+++|+.++++. +
T Consensus 217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~----------~~~rI~fv~GDa~dlpf~~~l~~~d 286 (419)
T 3sso_A 217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV----------DELRIRTIQGDQNDAEFLDRIARRY 286 (419)
T ss_dssp CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG----------CBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh----------cCCCcEEEEecccccchhhhhhccc
Confidence 7899999999 778888887764 789999999999731 225899999999998766 6
Q ss_pred CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 225 GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++||+|++.. .+++.+...+|++++++|||||++++.++.
T Consensus 287 ~sFDlVisdg-sH~~~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 287 GPFDIVIDDG-SHINAHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp CCEEEEEECS-CCCHHHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred CCccEEEECC-cccchhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 8999999864 566678899999999999999999999875
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-13 Score=123.45 Aligned_cols=101 Identities=23% Similarity=0.314 Sum_probs=84.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCc---cEEEec--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQF---DLVWSM-- 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~f---D~V~~~-- 233 (380)
+.+|||+|||+|.++..+++..+.+|+|+|+|+.+++.|++++...++..+++|+++|+.+. ++ ++| |+|+++
T Consensus 124 ~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~-~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 124 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FK-EKFASIEMILSNPP 201 (284)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GG-GGTTTCCEEEECCC
T ss_pred CCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cc-cccCCCCEEEEcCC
Confidence 67999999999999999998745799999999999999999999988877799999999873 22 578 999996
Q ss_pred ----------cccCCCCC--------HHHHHHHHH-HhcCCCcEEEEE
Q 016921 234 ----------ESGEHMPD--------KSKFVSELA-RVTAPAGTIIIV 262 (380)
Q Consensus 234 ----------~~l~~~~~--------~~~~l~~~~-r~LkpgG~l~~~ 262 (380)
.+. |-+. ...+++++. +.|+|||.+++.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e 248 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 248 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEE
Confidence 222 2221 227899999 999999999984
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.9e-13 Score=119.87 Aligned_cols=103 Identities=18% Similarity=0.270 Sum_probs=88.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-C-----CCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-F-----PDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~-----~~~~fD~ 229 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++.++++++++|+.+. + + +.++||+
T Consensus 71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~ 150 (237)
T 3c3y_A 71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDF 150 (237)
T ss_dssp CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEE
T ss_pred CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCE
Confidence 6799999999999999999986 5899999999999999999999888877899999998763 2 1 2578999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|++... ..+...+++++.++|+|||.+++.+.
T Consensus 151 I~~d~~---~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 151 GFVDAD---KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEECSC---GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred EEECCc---hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 998643 24668899999999999999988764
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.9e-12 Score=123.17 Aligned_cols=103 Identities=12% Similarity=-0.018 Sum_probs=85.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCC-CCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPF-PDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~-~~~~fD~V~~~~ 234 (380)
++.+|||+| |+|.++..++... ..+|+|+|+++.+++.|+++++..|+. +++++++|+.+ ++. .+++||+|++..
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~-~v~~~~~D~~~~l~~~~~~~fD~Vi~~~ 249 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYE-DIEIFTFDLRKPLPDYALHKFDTFITDP 249 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCC-CEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEEChhhhhchhhccCCccEEEECC
Confidence 378999999 9999999998874 369999999999999999999888875 89999999988 653 356899999976
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++.. ....+++++.++|||||++++..
T Consensus 250 p~~~~-~~~~~l~~~~~~LkpgG~~~~~~ 277 (373)
T 2qm3_A 250 PETLE-AIRAFVGRGIATLKGPRCAGYFG 277 (373)
T ss_dssp CSSHH-HHHHHHHHHHHTBCSTTCEEEEE
T ss_pred CCchH-HHHHHHHHHHHHcccCCeEEEEE
Confidence 54332 35789999999999999654443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-13 Score=122.86 Aligned_cols=102 Identities=20% Similarity=0.060 Sum_probs=89.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..+++.. +.+|+|+|+++.+++.|+++++..++. ++.++++|+.+.+. .++||+|++....
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~-~~~~~~~d~~~~~~-~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLN-NVIPILADNRDVEL-KDVADRVIMGYVH 196 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCS-SEEEEESCGGGCCC-TTCEEEEEECCCS
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-CEEEEECChHHcCc-cCCceEEEECCcc
Confidence 48899999999999999999985 569999999999999999999988874 78999999988743 5789999987543
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+...++.++.+.|+|||.+++.++.
T Consensus 197 ----~~~~~l~~~~~~LkpgG~l~~s~~~ 221 (272)
T 3a27_A 197 ----KTHKFLDKTFEFLKDRGVIHYHETV 221 (272)
T ss_dssp ----SGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred ----cHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 5677899999999999999998864
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-12 Score=119.07 Aligned_cols=128 Identities=16% Similarity=0.088 Sum_probs=103.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..++....++|+++|+++.+++.++++++.+++.+++.++++|+.+++ +.+.||.|++..-
T Consensus 125 ~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~-~~~~~D~Vi~~~p-- 201 (278)
T 3k6r_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGYV-- 201 (278)
T ss_dssp TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECCC--
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc-cccCCCEEEECCC--
Confidence 4899999999999999999987457999999999999999999999999889999999999876 4578999987532
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
+....++..+.++||+||.|.+.++....... -...+.+.++.++.|+...
T Consensus 202 --~~~~~~l~~a~~~lk~gG~ih~~~~~~e~~~~------------------------~~~~e~i~~~~~~~g~~v~ 252 (278)
T 3k6r_A 202 --VRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVE 252 (278)
T ss_dssp --SSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEE
T ss_pred --CcHHHHHHHHHHHcCCCCEEEEEeeecccccc------------------------hhHHHHHHHHHHHcCCcEE
Confidence 33456788899999999999887754321100 0234667788889998754
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=126.47 Aligned_cols=86 Identities=24% Similarity=0.329 Sum_probs=73.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.++++....+..++++++++|+.++
T Consensus 16 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~ 89 (285)
T 1zq9_A 16 IINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 89 (285)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHhcCCCC-----CCEEEEEcCcccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence 5667777776654 889999999999999999998 7899999999999999999886655546899999999987
Q ss_pred CCCCCCccEEEecc
Q 016921 221 PFPDGQFDLVWSME 234 (380)
Q Consensus 221 ~~~~~~fD~V~~~~ 234 (380)
+++ +||+|+++.
T Consensus 90 ~~~--~fD~vv~nl 101 (285)
T 1zq9_A 90 DLP--FFDTCVANL 101 (285)
T ss_dssp CCC--CCSEEEEEC
T ss_pred cch--hhcEEEEec
Confidence 764 799999854
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.9e-13 Score=115.26 Aligned_cols=95 Identities=19% Similarity=0.299 Sum_probs=77.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 221 (380)
++.+|||||||+|.++..+++..+ .+|+|+|+|+.. .. +++.++++|+.+.+
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~-~~v~~~~~d~~~~~~~~~~~~~~i~~~ 89 (201)
T 2plw_A 22 KNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PI-PNVYFIQGEIGKDNMNNIKNINYIDNM 89 (201)
T ss_dssp TTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CC-TTCEEEECCTTTTSSCCC---------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CC-CCceEEEccccchhhhhhccccccccc
Confidence 378999999999999999999863 799999999831 12 47999999998876
Q ss_pred ------------CCCCCccEEEeccccCCCC----CH-------HHHHHHHHHhcCCCcEEEEEec
Q 016921 222 ------------FPDGQFDLVWSMESGEHMP----DK-------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 ------------~~~~~fD~V~~~~~l~~~~----~~-------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++++||+|++..++++.. +. ..+++++.++|||||.+++..+
T Consensus 90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 155 (201)
T 2plw_A 90 NNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMY 155 (201)
T ss_dssp --CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEe
Confidence 5667999999988776642 22 2378999999999999998654
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.6e-13 Score=119.17 Aligned_cols=104 Identities=16% Similarity=0.225 Sum_probs=88.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCC----CCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPD----GQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~----~~fD~V 230 (380)
+.+|||||||+|..+..+++.. +.+|+++|+++.+++.|++++...++..+++++++|+.+. .+.. ++||+|
T Consensus 70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v 149 (229)
T 2avd_A 70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVA 149 (229)
T ss_dssp CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEE
Confidence 7899999999999999999875 5799999999999999999999888877999999998653 1111 689999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++... ..+...+++++.++|+|||.+++.+..
T Consensus 150 ~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 181 (229)
T 2avd_A 150 VVDAD---KENCSAYYERCLQLLRPGGILAVLRVL 181 (229)
T ss_dssp EECSC---STTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred EECCC---HHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 98654 345678999999999999999997654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.4e-12 Score=124.42 Aligned_cols=107 Identities=21% Similarity=0.311 Sum_probs=90.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEe-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~- 232 (380)
++.+|||+|||+|..+..+++.. + .+|+++|+++.+++.+++++...|+ .++.++++|+.+++ +++++||+|++
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~-~~v~~~~~D~~~~~~~~~~~~fD~Vl~D 337 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGI-KIVKPLVKDARKAPEIIGEEVADKVLLD 337 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCTTCCSSSSCSSCEEEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCC-CcEEEEEcChhhcchhhccCCCCEEEEc
Confidence 48899999999999999999976 3 7999999999999999999988887 47999999998875 55578999996
Q ss_pred -----ccccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 233 -----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 233 -----~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+++++.++. ..+++++.++|||||+|++++..
T Consensus 338 ~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs 391 (450)
T 2yxl_A 338 APCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCS 391 (450)
T ss_dssp CCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCC
Confidence 3344544443 57899999999999999998743
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.40 E-value=7.5e-13 Score=120.65 Aligned_cols=106 Identities=11% Similarity=0.115 Sum_probs=88.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V~ 231 (380)
++.+|||+|||+|..+..+++.. + .+|+++|+++.+++.+++++...++. ++.++++|+.+++. ..++||+|+
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~Vl 161 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVL-NTIIINADMRKYKDYLLKNEIFFDKIL 161 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCC-cEEEEeCChHhcchhhhhccccCCEEE
Confidence 48899999999999999999875 4 79999999999999999999988875 89999999987643 257899999
Q ss_pred ecc------ccC------------CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SME------SGE------------HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~------~l~------------~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.- ++. .......+++++.++|||||++++.+.
T Consensus 162 ~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc 212 (274)
T 3ajd_A 162 LDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC 212 (274)
T ss_dssp EEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred EcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 862 221 113457899999999999999999874
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-11 Score=107.94 Aligned_cols=126 Identities=13% Similarity=-0.017 Sum_probs=96.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+++.+++.+++++...++ ++.++++|+.+++ ++||+|++.-.++
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~---~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEFN---SRVDIVIMNPPFG 123 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGCC---CCCSEEEECCCCS
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC--CEEEEECchHHcC---CCCCEEEEcCCCc
Confidence 3789999999999999999987334799999999999999999877765 7999999998864 4899999987776
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
+.. ....+++++.+++ ||.+++. ... . .+.+.+.+.+++.||+...
T Consensus 124 ~~~~~~~~~~l~~~~~~l--~~~~~~~-~~~-----------~------------------~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 124 SQRKHADRPFLLKAFEIS--DVVYSIH-LAK-----------P------------------EVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp SSSTTTTHHHHHHHHHHC--SEEEEEE-ECC-----------H------------------HHHHHHHHHHHHTTEEEEE
T ss_pred cccCCchHHHHHHHHHhc--CcEEEEE-eCC-----------c------------------CCHHHHHHHHHHCCCeEEE
Confidence 653 3357889999998 5544333 100 0 0234566788999998776
Q ss_pred EEecC
Q 016921 316 AEDWS 320 (380)
Q Consensus 316 ~~~~~ 320 (380)
+....
T Consensus 172 ~~~~~ 176 (207)
T 1wy7_A 172 RLTTK 176 (207)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 65444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.9e-12 Score=111.45 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=80.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.+.+++....+- .++.+|||+|||+|.++..+++. +.+|+|+|+++.. .. .++.++++|+.+.
T Consensus 12 KL~ei~~~~~~~----~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~-----------~~-~~v~~~~~D~~~~ 74 (191)
T 3dou_A 12 KLEFLLDRYRVV----RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME-----------EI-AGVRFIRCDIFKE 74 (191)
T ss_dssp HHHHHHHHHCCS----CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC-----------CC-TTCEEEECCTTSS
T ss_pred HHHHHHHHcCCC----CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc-----------cC-CCeEEEEccccCH
Confidence 444555555432 24899999999999999999988 8899999999741 12 4799999999886
Q ss_pred CCC-----------CCCccEEEeccccCCCC----C-------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 PFP-----------DGQFDLVWSMESGEHMP----D-------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~~~-----------~~~fD~V~~~~~l~~~~----~-------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.. .++||+|++........ | ...+++.+.++|||||.|++..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~ 140 (191)
T 3dou_A 75 TIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQF 140 (191)
T ss_dssp SHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence 421 14899999965432221 1 24678899999999999998775
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.2e-12 Score=122.23 Aligned_cols=104 Identities=21% Similarity=0.331 Sum_probs=83.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC--CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ--PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~--~~~~~~fD~V~~ 232 (380)
+.+|||||||+|..+..+++.. ..+|+++|+|+.+++.|++++... ++ .++++++++|+.+. ..++++||+|++
T Consensus 121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlIi~ 200 (334)
T 1xj5_A 121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVIV 200 (334)
T ss_dssp CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEEE
T ss_pred CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEEEE
Confidence 7899999999999999999865 579999999999999999987642 33 35899999998764 234678999998
Q ss_pred ccccCC-CCC---HHHHHHHHHHhcCCCcEEEEE
Q 016921 233 MESGEH-MPD---KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 233 ~~~l~~-~~~---~~~~l~~~~r~LkpgG~l~~~ 262 (380)
...... ..+ ...+++++.++|+|||.|++.
T Consensus 201 d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 201 DSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp CCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred CCCCccCcchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 543211 111 368999999999999999996
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.3e-13 Score=123.83 Aligned_cols=102 Identities=18% Similarity=0.143 Sum_probs=76.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEE--EcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA-ARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~-~~~~~~~v~~~--~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|.++..+++. .+|+|+|+++ |+..+++... ......++.++ ++|+.+++ +++||+|++..
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvsd~ 156 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLCDI 156 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEECC
T ss_pred CCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEECC
Confidence 4889999999999999999986 6899999998 5433221100 00011168999 99998875 68999999987
Q ss_pred ccCCCCCH----H---HHHHHHHHhcCCCc--EEEEEecc
Q 016921 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~r~LkpgG--~l~~~~~~ 265 (380)
+ ++..++ . .+++++.++||||| .+++..+.
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 7 444332 1 37899999999999 99987654
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-11 Score=106.80 Aligned_cols=87 Identities=16% Similarity=0.168 Sum_probs=71.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.+++++. +++++++|+.+++ ++||+|++...++
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~------~~~~~~~d~~~~~---~~~D~v~~~~p~~ 121 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG------GVNFMVADVSEIS---GKYDTWIMNPPFG 121 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT------TSEEEECCGGGCC---CCEEEEEECCCC-
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC------CCEEEECcHHHCC---CCeeEEEECCCch
Confidence 378999999999999999998623479999999999999998763 6899999998864 6899999999988
Q ss_pred CCCC--HHHHHHHHHHhc
Q 016921 238 HMPD--KSKFVSELARVT 253 (380)
Q Consensus 238 ~~~~--~~~~l~~~~r~L 253 (380)
|+.+ ...+++++.+++
T Consensus 122 ~~~~~~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 122 SVVKHSDRAFIDKAFETS 139 (200)
T ss_dssp ------CHHHHHHHHHHE
T ss_pred hccCchhHHHHHHHHHhc
Confidence 8854 247899999998
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.9e-12 Score=119.16 Aligned_cols=105 Identities=19% Similarity=0.245 Sum_probs=84.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|.++..+++.+ +.+|+++|+++.+++.|++.+.... .++++++++|+.+. .+++++||+|++...
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~-~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~ 168 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPR-APRVKIRVDDARMVAESFTPASRDVIIRDVF 168 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCC-TTTEEEEESCHHHHHHTCCTTCEEEEEECCS
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccC-CCceEEEECcHHHHHhhccCCCCCEEEECCC
Confidence 3599999999999999999976 7799999999999999999874321 35899999998764 345689999998543
Q ss_pred cCCC-CC---HHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHM-PD---KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.... +. ..+++++++++|+|||++++...
T Consensus 169 ~~~~~~~~L~t~efl~~~~r~LkpgGvlv~~~~ 201 (317)
T 3gjy_A 169 AGAITPQNFTTVEFFEHCHRGLAPGGLYVANCG 201 (317)
T ss_dssp TTSCCCGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccchhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence 3221 11 26899999999999999998764
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.7e-12 Score=108.51 Aligned_cols=95 Identities=22% Similarity=0.331 Sum_probs=75.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCCCC-----
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG----------AKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQQP----- 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~----------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~----- 221 (380)
++.+|||||||+|.++..+++..+ .+|+|+|+|+.+ .. .++.++ .+|+...+
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~-~~~~~~~~~d~~~~~~~~~~ 89 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PL-EGATFLCPADVTDPRTSQRI 89 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CC-TTCEEECSCCTTSHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cC-CCCeEEEeccCCCHHHHHHH
Confidence 488999999999999999999863 799999999831 12 468899 89987643
Q ss_pred ---CCCCCccEEEeccccCCC----CCH-------HHHHHHHHHhcCCCcEEEEEec
Q 016921 222 ---FPDGQFDLVWSMESGEHM----PDK-------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 ---~~~~~fD~V~~~~~l~~~----~~~-------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++++||+|++...++.. .+. ..+++++.++|||||.+++..+
T Consensus 90 ~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 146 (196)
T 2nyu_A 90 LEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW 146 (196)
T ss_dssp HHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence 345689999997655432 222 4789999999999999999875
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-13 Score=122.56 Aligned_cols=102 Identities=19% Similarity=0.259 Sum_probs=75.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-HHcCCCCCeEEE--EcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA-AARGLADKVSFQ--VGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~-~~~~~~~~v~~~--~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|.++..+++. .+|+|+|+++ |+..+++.. .......++.++ ++|+.+++ +++||+|++..
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~sd~ 148 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIMCDV 148 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEEECC
T ss_pred CCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEEEeC
Confidence 4889999999999999999986 6899999998 532221110 000011168999 99998875 68999999987
Q ss_pred ccCCCCCH----H---HHHHHHHHhcCCCc--EEEEEecc
Q 016921 235 SGEHMPDK----S---KFVSELARVTAPAG--TIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~----~---~~l~~~~r~LkpgG--~l~~~~~~ 265 (380)
+ ++..++ . .+++++.++||||| .+++..+.
T Consensus 149 ~-~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 149 G-ESSPKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred c-ccCCccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 7 554442 1 37899999999999 99987654
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.1e-12 Score=121.07 Aligned_cols=105 Identities=19% Similarity=0.265 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii~d 175 (304)
T 2o07_A 96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 175 (304)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEEEC
Confidence 7899999999999999999865 47999999999999999998765 233 46899999998762 3346789999985
Q ss_pred cccCCCC----CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......+ ....+++++.++|+|||.+++..
T Consensus 176 ~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 176 SSDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp CC-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCCCCcchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 4332211 12468999999999999999865
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.7e-12 Score=120.61 Aligned_cols=105 Identities=20% Similarity=0.225 Sum_probs=85.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cC-C-CCCeEEEEcCCCCC-CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RG-L-ADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~-~-~~~v~~~~~d~~~~-~~~~~~fD~V~~ 232 (380)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++.. .+ + .++++++.+|+.+. +..+++||+|++
T Consensus 78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 157 (314)
T 1uir_A 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (314)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEEE
Confidence 6899999999999999999865 57999999999999999998764 22 2 36899999998763 334678999999
Q ss_pred ccccCC---CC--C--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEH---MP--D--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~---~~--~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....++ -+ . ...+++++.++|||||.+++..
T Consensus 158 d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred CCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 765543 11 1 3689999999999999999864
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.32 E-value=9e-13 Score=122.13 Aligned_cols=104 Identities=20% Similarity=0.286 Sum_probs=81.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~d 188 (314)
T 2b2c_A 109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 188 (314)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEEc
Confidence 6899999999999999999865 579999999999999999987543 23 46899999998763 3346789999985
Q ss_pred cccCCC-CCH----HHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM-PDK----SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~-~~~----~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. .++ +.. ..+++++.++|+|||.+++..
T Consensus 189 ~~-~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 189 SS-DPVGPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp CC--------------HHHHHHHHEEEEEEEEEEC
T ss_pred CC-CCCCcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 43 332 111 688999999999999999864
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-11 Score=115.66 Aligned_cols=118 Identities=19% Similarity=0.349 Sum_probs=92.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
+.....+++.++..+.... +.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. ++.|++
T Consensus 268 ~~~~e~l~~~~~~~l~~~~-----~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~-~v~f~~ 340 (433)
T 1uwv_A 268 AGVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQ-NVTFYH 340 (433)
T ss_dssp HHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCC-SEEEEE
T ss_pred HHHHHHHHHHHHHhhcCCC-----CCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEE
Confidence 4455667777777776543 789999999999999999987 789999999999999999999888875 899999
Q ss_pred cCCCCC----CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQ----PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~----~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+. ++++++||+|++.---... ..+++.+.+ ++|++.++++.
T Consensus 341 ~d~~~~l~~~~~~~~~fD~Vv~dPPr~g~---~~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 341 ENLEEDVTKQPWAKNGFDKVLLDPARAGA---AGVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCTTSCCSSSGGGTTCCSEEEECCCTTCC---HHHHHHHHH-HCCSEEEEEES
T ss_pred CCHHHHhhhhhhhcCCCCEEEECCCCccH---HHHHHHHHh-cCCCeEEEEEC
Confidence 999872 3456789999984322211 245555544 78999888864
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=118.62 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=82.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++.. .++ .++++++.+|+.+. +..+++||+|++.
T Consensus 91 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 170 (296)
T 1inl_A 91 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 170 (296)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEEc
Confidence 6899999999999999999875 57999999999999999998754 223 35899999998663 3345789999975
Q ss_pred cccCCCC-----CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMP-----DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~-----~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-.++. ....+++++.++|+|||.+++..
T Consensus 171 ~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 205 (296)
T 1inl_A 171 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 205 (296)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCcccCchhhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 3221121 12688999999999999999964
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.5e-11 Score=114.25 Aligned_cols=104 Identities=18% Similarity=0.226 Sum_probs=86.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 231 (380)
++.+|||+|||+|.++..+++... .+++|+|+++.+++.|+.++...++ ++.++++|..... +.++||+|+
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~--~~~i~~~D~l~~~-~~~~fD~Ii 206 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVVI 206 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC--CceEEECCCCCcc-ccCCccEEE
Confidence 378999999999999999988762 7899999999999999999887776 5899999987643 457899999
Q ss_pred eccccCCCCCH------------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDK------------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~------------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++-.+.+++.. ..+++++.+.|+|||++++...
T Consensus 207 ~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 207 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 98766555332 2579999999999999988763
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=5.6e-12 Score=122.23 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=86.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. ...|+++|+|+.+++.+++++...|+. +.++++|+.+++ ..+++||+|++.
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~--v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP--LAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC--CEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe--EEEEECCHHHhhhhccccCCEEEECC
Confidence 48999999999999999999876 369999999999999999999998885 999999988764 235789999951
Q ss_pred -----cccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 234 -----ESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 -----~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.++.+-++. ..+++++.++|||||+|+.++.
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTC 230 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTC 230 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEES
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 233332322 6789999999999999998764
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.31 E-value=4.4e-12 Score=115.53 Aligned_cols=105 Identities=21% Similarity=0.297 Sum_probs=84.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|..+..+++.. ..+|+++|+++.+++.|++++... ++ .++++++.+|+.+. +..+++||+|++.
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~d 155 (275)
T 1iy9_A 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (275)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEEC
Confidence 7899999999999999999864 479999999999999999987542 23 36899999998763 3345789999985
Q ss_pred cccCCCCC----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMPD----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......+. ...+++++.++|+|||.+++..
T Consensus 156 ~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~~~ 189 (275)
T 1iy9_A 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (275)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 44322211 2679999999999999999864
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.30 E-value=4e-12 Score=117.20 Aligned_cols=86 Identities=19% Similarity=0.335 Sum_probs=68.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++..+.+.. +.+|||||||+|.++..+++. +.+|+|+|+++.+++.+++++...+. ++++++.+|+.++
T Consensus 30 i~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~La~~-~~~v~~vDi~~~~~~~a~~~~~~~~~-~~v~~~~~D~~~~ 102 (299)
T 2h1r_A 30 ILDKIIYAAKIKS-----SDIVLEIGCGTGNLTVKLLPL-AKKVITIDIDSRMISEVKKRCLYEGY-NNLEVYEGDAIKT 102 (299)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHTTT-SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEC----CCSS
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcCcCcHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEECchhhC
Confidence 4566666666544 889999999999999999987 78999999999999999999877666 5899999999887
Q ss_pred CCCCCCccEEEeccc
Q 016921 221 PFPDGQFDLVWSMES 235 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~ 235 (380)
++ .+||+|+++..
T Consensus 103 ~~--~~~D~Vv~n~p 115 (299)
T 2h1r_A 103 VF--PKFDVCTANIP 115 (299)
T ss_dssp CC--CCCSEEEEECC
T ss_pred Cc--ccCCEEEEcCC
Confidence 65 48999998543
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-12 Score=123.28 Aligned_cols=106 Identities=16% Similarity=0.057 Sum_probs=85.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC-C-C--CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ-P-F--PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~-~-~--~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..++.....+|+|+|+|+.+++.|+++++..++.+ +++|+++|+.+. + . ..++||+|++.
T Consensus 213 ~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~D 292 (385)
T 2b78_A 213 GKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIID 292 (385)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEEC
Confidence 78999999999999999998633489999999999999999999988865 899999998763 2 1 24589999984
Q ss_pred ccc-----CCCC----CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESG-----EHMP----DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l-----~~~~----~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
--. .+.. +...+++.+.++|+|||.|++...
T Consensus 293 PP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~ 332 (385)
T 2b78_A 293 PPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN 332 (385)
T ss_dssp CCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 322 2232 345577888999999999999863
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.8e-12 Score=120.72 Aligned_cols=104 Identities=20% Similarity=0.237 Sum_probs=83.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHH--cCC-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAA--RGL-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~--~~~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|.++..+++.. +.+|+++|+|+.+++.|++++.. .++ .++++++++|+.+. +..+++||+|++.
T Consensus 117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~d 196 (321)
T 2pt6_A 117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 196 (321)
T ss_dssp CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEEC
Confidence 6899999999999999999865 57999999999999999998754 122 35899999998663 2235789999986
Q ss_pred cccCCC---CCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM---PDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~---~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.. .++ ... ..+++++.++|+|||.+++..
T Consensus 197 ~~-~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 230 (321)
T 2pt6_A 197 SS-DPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 230 (321)
T ss_dssp CC-CSSSGGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cc-CCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 43 222 111 689999999999999999964
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-12 Score=121.62 Aligned_cols=106 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCCC----CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQPF----PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~~----~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++ .++++++++|+.+... ..++||+|++.
T Consensus 221 ~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~d 300 (396)
T 3c0k_A 221 NKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMD 300 (396)
T ss_dssp TCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEEC
Confidence 789999999999999999986335999999999999999999998887 5589999999877521 14689999986
Q ss_pred c---------ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 E---------SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~---------~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
- ......+...++.++.+.|+|||.+++...
T Consensus 301 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 340 (396)
T 3c0k_A 301 PPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSC 340 (396)
T ss_dssp CSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence 3 222335667899999999999999999763
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.28 E-value=9e-12 Score=120.60 Aligned_cols=106 Identities=17% Similarity=0.165 Sum_probs=86.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 234 (380)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...|+. ++.++++|+..++ ..+++||+|++.-
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~-nv~v~~~Da~~l~~~~~~~FD~Il~Da 183 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVS-NAIVTNHAPAELVPHFSGFFDRIVVDA 183 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCS-SEEEECCCHHHHHHHHTTCEEEEEEEC
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhhhhccccCCEEEECC
Confidence 48999999999999999999876 369999999999999999999998884 7999999988764 2357899999732
Q ss_pred ------ccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 235 ------SGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ------~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++.+-++. ..++.++.++|||||+|+.++.
T Consensus 184 PCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTC 235 (456)
T 3m4x_A 184 PCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTC 235 (456)
T ss_dssp CCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEES
T ss_pred CCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 22221111 2689999999999999998774
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-11 Score=115.99 Aligned_cols=98 Identities=19% Similarity=0.120 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++.. ++ .+.+|+|+|+|+.+++.+++++...++.+++.++++|+.+.. ++||+|++.-. .
T Consensus 196 ~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~---~~fD~Vi~dpP-~- 268 (336)
T 2yx1_A 196 NDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD---VKGNRVIMNLP-K- 268 (336)
T ss_dssp TCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC---CCEEEEEECCT-T-
T ss_pred CCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc---CCCcEEEECCc-H-
Confidence 88999999999999999 87 478999999999999999999999988778999999998865 78999998532 1
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
....++..+.++|+|||.+++.++.
T Consensus 269 --~~~~~l~~~~~~L~~gG~l~~~~~~ 293 (336)
T 2yx1_A 269 --FAHKFIDKALDIVEEGGVIHYYTIG 293 (336)
T ss_dssp --TGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred --hHHHHHHHHHHHcCCCCEEEEEEee
Confidence 1237889999999999999998754
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-11 Score=119.85 Aligned_cols=107 Identities=17% Similarity=0.224 Sum_probs=88.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEec-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSM- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~- 233 (380)
++.+|||+|||+|..+..+++.. ...|+++|+++.+++.+++++...|+. ++.++++|+..++. .+++||+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~-nv~~~~~D~~~~~~~~~~~fD~Il~D~ 195 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGIS-NVALTHFDGRVFGAAVPEMFDAILLDA 195 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCC-SEEEECCCSTTHHHHSTTCEEEEEEEC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEeCCHHHhhhhccccCCEEEECC
Confidence 48899999999999999999976 379999999999999999999988874 79999999988653 45789999972
Q ss_pred -----cccCCCCC----------------HHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 -----ESGEHMPD----------------KSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 -----~~l~~~~~----------------~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.++.+.++ ...+++++.++|||||+|++++.+
T Consensus 196 PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 196 PCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 22332222 136899999999999999998753
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=117.98 Aligned_cols=105 Identities=17% Similarity=0.249 Sum_probs=88.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEe--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWS-- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~-- 232 (380)
++.+|||+|||+|..+..+++.. +.+|+++|+++.+++.+++++...++ ++.++++|+.+++ +++++||+|++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM--KATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC--CCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC--CeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 48899999999999999999986 47999999999999999999988886 4789999998875 55678999996
Q ss_pred ----ccccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 233 ----MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ----~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+++++.++. ..+++++.++|||||++++++.
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystc 375 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 375 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2344444443 4789999999999999999874
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-12 Score=116.30 Aligned_cols=105 Identities=20% Similarity=0.207 Sum_probs=83.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--C-CCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--L-ADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--~-~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+|||||||+|.++..+++.. ..+|+++|+++.+++.|++++...+ + .++++++.+|+.+. +..+++||+|++.
T Consensus 79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~d 158 (283)
T 2i7c_A 79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIVD 158 (283)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEEE
T ss_pred CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEEEc
Confidence 7899999999999999998865 5799999999999999999875421 1 35899999998763 2225789999985
Q ss_pred cccCCCCC--H--HHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMPD--K--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~--~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....+.+. . ..+++++.++|+|||.+++..
T Consensus 159 ~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 192 (283)
T 2i7c_A 159 SSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQC 192 (283)
T ss_dssp CCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEC
Confidence 44332221 1 689999999999999999874
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6.5e-12 Score=128.50 Aligned_cols=105 Identities=17% Similarity=0.178 Sum_probs=87.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC-CCCCCCccEEEecc--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ-PFPDGQFDLVWSME-- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~-~~~~~~fD~V~~~~-- 234 (380)
+.+|||+|||+|.++..++.....+|+++|+|+.+++.|++++..+++. .+++++++|+.+. +...++||+|++.-
T Consensus 540 g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DPP~ 619 (703)
T 3v97_A 540 GKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDPPT 619 (703)
T ss_dssp TCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECCCS
T ss_pred CCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECCcc
Confidence 8899999999999999998853346999999999999999999999886 5899999998873 33457899999843
Q ss_pred ---------ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 ---------SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ---------~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.+..+...++..+.++|+|||.|++..
T Consensus 620 f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~ 657 (703)
T 3v97_A 620 FSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSN 657 (703)
T ss_dssp BC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 22223456788999999999999999876
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.8e-12 Score=116.31 Aligned_cols=103 Identities=18% Similarity=0.267 Sum_probs=81.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC--------CCCeEEEEcCCCCC-CCCCCCc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL--------ADKVSFQVGDALQQ-PFPDGQF 227 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~--------~~~v~~~~~d~~~~-~~~~~~f 227 (380)
+.+|||||||+|.++..+++....+|+++|+++.+++.|++++ .. ++ .++++++.+|+.+. +. +++|
T Consensus 76 ~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~~f 153 (281)
T 1mjf_A 76 PKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NRGF 153 (281)
T ss_dssp CCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CCCE
T ss_pred CCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cCCe
Confidence 7899999999999999998863469999999999999999987 33 22 36899999998653 22 5789
Q ss_pred cEEEeccccCCCC--C--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMP--D--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~--~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|++......-+ . ...+++++.++|+|||.+++..
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 9999865432111 1 2678999999999999999864
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.25 E-value=7.2e-12 Score=120.21 Aligned_cols=107 Identities=21% Similarity=0.186 Sum_probs=87.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V~~~ 233 (380)
++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|++++...++.+++.++++|+.+... +.++||+|++.
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~d 296 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 296 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEEC
Confidence 38899999999999999999862349999999999999999999988876589999999876521 25789999985
Q ss_pred cccCC---------CCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEH---------MPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~---------~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
--... ..+...++.++.++|+|||.+++...
T Consensus 297 pP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~ 336 (396)
T 2as0_A 297 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 336 (396)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 32211 13456789999999999999998874
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.9e-12 Score=121.45 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V~~~~ 234 (380)
+.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|++++...++. ++.++++|+.+... .+++||+|++.-
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~-~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLG-NVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCT-TEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC-CceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 789999999999999999998 789999999999999999999988875 49999999877521 257899999843
Q ss_pred ccCC---------CCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEH---------MPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~---------~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-... ..+...++.++.++|+|||.+++...
T Consensus 288 P~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 326 (382)
T 1wxx_A 288 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 326 (382)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 2211 12346789999999999999999874
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.9e-11 Score=116.69 Aligned_cols=104 Identities=23% Similarity=0.202 Sum_probs=83.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~~l 236 (380)
++.+|||+|||+|.++..++.. ++.|+++|+|+.+++.|++++...++. ..+.++|+.+.. ...+.||+|++.-..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~-ga~V~avDis~~al~~a~~n~~~ng~~--~~~~~~D~~~~l~~~~~~fD~Ii~dpP~ 290 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARK-GAYALAVDKDLEALGVLDQAALRLGLR--VDIRHGEALPTLRGLEGPFHHVLLDPPT 290 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--CEEEESCHHHHHHTCCCCEEEEEECCCC
T ss_pred CCCeEEEcccchhHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHhCCC--CcEEEccHHHHHHHhcCCCCEEEECCCc
Confidence 3889999999999999999986 778999999999999999999988875 356789987642 113449999986432
Q ss_pred CC---------CCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EH---------MPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~---------~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.. ..+...++..+.++|||||.|++...
T Consensus 291 f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~ 327 (393)
T 4dmg_A 291 LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSC 327 (393)
T ss_dssp CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 11 12345788999999999999997764
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.23 E-value=4.6e-12 Score=113.35 Aligned_cols=79 Identities=18% Similarity=0.274 Sum_probs=65.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.++..+.+.. +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++... .++++++++|+.++
T Consensus 18 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~lt~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~---~~~v~~~~~D~~~~ 88 (244)
T 1qam_A 18 NIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVD---HDNFQVLNKDILQF 88 (244)
T ss_dssp HHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTT---CCSEEEECCCGGGC
T ss_pred HHHHHHHhCCCCC-----CCEEEEEeCCchHHHHHHHHc-CCeEEEEECCHHHHHHHHHhhcc---CCCeEEEEChHHhC
Confidence 5566666665543 889999999999999999998 68999999999999999987743 25899999999998
Q ss_pred CCCC-CCcc
Q 016921 221 PFPD-GQFD 228 (380)
Q Consensus 221 ~~~~-~~fD 228 (380)
++++ ..|+
T Consensus 89 ~~~~~~~~~ 97 (244)
T 1qam_A 89 KFPKNQSYK 97 (244)
T ss_dssp CCCSSCCCE
T ss_pred CcccCCCeE
Confidence 8764 4553
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.23 E-value=3.5e-12 Score=115.19 Aligned_cols=96 Identities=13% Similarity=0.004 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CC-CCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GL-ADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~-~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
+.+|||||||+|..+..+++. +.+|+++|+++.+++.|++.+... ++ .++++++.+|+.+.. ++||+|++.
T Consensus 73 ~~~VL~iG~G~G~~~~~ll~~-~~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d-- 146 (262)
T 2cmg_A 73 LKEVLIVDGFDLELAHQLFKY-DTHIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL-- 146 (262)
T ss_dssp CCEEEEESSCCHHHHHHHTTS-SCEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES--
T ss_pred CCEEEEEeCCcCHHHHHHHhC-CCEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC--
Confidence 689999999999999999887 689999999999999998765321 11 258999999998764 789999986
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..++..+++++.++|+|||.+++..
T Consensus 147 ---~~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 147 ---QEPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp ---SCCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred ---CCChHHHHHHHHHhcCCCcEEEEEc
Confidence 3456679999999999999999864
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.23 E-value=6.3e-10 Score=104.79 Aligned_cols=185 Identities=18% Similarity=0.237 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHH--------c--------CCEEEEEeCCHHHHHHHHHHH
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKK--------F--------GAKCQGITLSPVQAQRANALA 201 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~--------~--------~~~v~giD~s~~~~~~a~~~~ 201 (380)
...++++.+..+.......+...+|+|+|||+|.++..+... . ..+|...|+-.+.....=+.+
T Consensus 32 ~~~~~~~ai~~l~~~~~~~~~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L 111 (374)
T 3b5i_A 32 MLHLLEETLENVHLNSSASPPPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLL 111 (374)
T ss_dssp HHHHHHHHHHTSCCCCSSSCCCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHS
T ss_pred HHHHHHHHHHHhhccccCCCCceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhh
Confidence 355666677766554211234689999999999999887432 1 246777777655432221111
Q ss_pred HHc-----------CCCCCeEEEEcCCC---CCCCCCCCccEEEeccccCCCC---------------------------
Q 016921 202 AAR-----------GLADKVSFQVGDAL---QQPFPDGQFDLVWSMESGEHMP--------------------------- 240 (380)
Q Consensus 202 ~~~-----------~~~~~v~~~~~d~~---~~~~~~~~fD~V~~~~~l~~~~--------------------------- 240 (380)
... +...+-.|+.+... .-.+|+++||+|++..+|||+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~ 191 (374)
T 3b5i_A 112 PPLVSNTCMEECLAADGNRSYFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEK 191 (374)
T ss_dssp CCBCCCC--CCC---CCCBCSEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHH
T ss_pred hhhhhhcchhhhccccCCCceEEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHH
Confidence 110 00001123333322 2357899999999999999986
Q ss_pred -----------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-----hHHHHHHHHH----------hhccCCC
Q 016921 241 -----------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-----PWEQELLKKI----------CDAYYLP 294 (380)
Q Consensus 241 -----------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~----------~~~~~~~ 294 (380)
|...+|+..++.|+|||++++...+..+..+....-. ......+... .+.+.+|
T Consensus 192 v~~ay~~Qf~~D~~~fL~~ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P 271 (374)
T 3b5i_A 192 TTTAYKRQFQADLAEFLRARAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIP 271 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCcc
Confidence 3445788899999999999999877655322221000 0111112111 1122334
Q ss_pred C-CCCHHHHHHHHH-hCCCcEEEEEecCCC
Q 016921 295 A-WCSTADYVKLLQ-SLSLEDIKAEDWSQN 322 (380)
Q Consensus 295 ~-~~~~~~~~~ll~-~aGf~~v~~~~~~~~ 322 (380)
. +++.+++..+++ +.||++..++.+..+
T Consensus 272 ~y~ps~~E~~~~l~~~~~F~I~~le~~~~~ 301 (374)
T 3b5i_A 272 VYAPSLQDFKEVVDANGSFAIDKLVVYKGG 301 (374)
T ss_dssp BCCCCHHHHHHHHHHHCSEEEEEEEEEECC
T ss_pred ccCCCHHHHHHHHHhcCCcEEEEEEEEeec
Confidence 2 478999999998 599999888766544
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.9e-11 Score=105.96 Aligned_cols=101 Identities=10% Similarity=0.115 Sum_probs=87.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||||||+|.++..++... ..+|+++|+++.+++.+++++...|+. ..+.+.|...-+ +.++||+|++.-+++
T Consensus 133 p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~--~~~~v~D~~~~~-p~~~~DvaL~lkti~ 209 (281)
T 3lcv_B 133 PNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVP--HRTNVADLLEDR-LDEPADVTLLLKTLP 209 (281)
T ss_dssp CSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCC--EEEEECCTTTSC-CCSCCSEEEETTCHH
T ss_pred CceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEeeecccC-CCCCcchHHHHHHHH
Confidence 7799999999999999998765 789999999999999999999888864 788999987655 568899999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+++. ...+ ++.+.|+|+|.++-.+
T Consensus 210 ~Le~q~kg~g~-~ll~aL~~~~vvVSfp 236 (281)
T 3lcv_B 210 CLETQQRGSGW-EVIDIVNSPNIVVTFP 236 (281)
T ss_dssp HHHHHSTTHHH-HHHHHSSCSEEEEEEE
T ss_pred HhhhhhhHHHH-HHHHHhCCCCEEEecc
Confidence 99653 3455 9999999999988865
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.4e-11 Score=109.02 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=83.8
Q ss_pred CCCCEEEEECCCc------ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE-EEcCCCCCCCCCCCc
Q 016921 157 KRPKNVVDVGCGI------GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSF-QVGDALQQPFPDGQF 227 (380)
Q Consensus 157 ~~~~~vLDiGcGt------G~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~-~~~d~~~~~~~~~~f 227 (380)
.++.+|||+|||+ |. ..+++.. +.+|+|+|+++. + .++++ +++|+.+++++ ++|
T Consensus 62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v-~~v~~~i~gD~~~~~~~-~~f 124 (290)
T 2xyq_A 62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------V-SDADSTLIGDCATVHTA-NKW 124 (290)
T ss_dssp CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------B-CSSSEEEESCGGGCCCS-SCE
T ss_pred CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------C-CCCEEEEECccccCCcc-Ccc
Confidence 3588999999944 66 4455554 479999999987 1 36889 99999987754 789
Q ss_pred cEEEeccccCC-----------CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCC
Q 016921 228 DLVWSMESGEH-----------MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296 (380)
Q Consensus 228 D~V~~~~~l~~-----------~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (380)
|+|++...... ......+++++.++|||||.|++..+...
T Consensus 125 D~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~----------------------------- 175 (290)
T 2xyq_A 125 DLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS----------------------------- 175 (290)
T ss_dssp EEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS-----------------------------
T ss_pred cEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC-----------------------------
Confidence 99998643221 11235899999999999999999764211
Q ss_pred CCHHHHHHHHHhCCCcEEEEE
Q 016921 297 CSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 297 ~~~~~~~~ll~~aGf~~v~~~ 317 (380)
..+++.+++++.||..++..
T Consensus 176 -~~~~l~~~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 176 -WNADLYKLMGHFSWWTAFVT 195 (290)
T ss_dssp -CCHHHHHHHTTEEEEEEEEE
T ss_pred -CHHHHHHHHHHcCCcEEEEE
Confidence 12467788888899877654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=5.2e-11 Score=104.21 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=84.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..++ .+..|+|+|+++.+++.+++.+...+ .+..+.++|....+.+ ++||+|++.-+++
T Consensus 105 ~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g--~~~~~~v~D~~~~~~~-~~~DvvLllk~lh 179 (253)
T 3frh_A 105 TPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKD--WDFTFALQDVLCAPPA-EAGDLALIFKLLP 179 (253)
T ss_dssp CCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTT--CEEEEEECCTTTSCCC-CBCSEEEEESCHH
T ss_pred CCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcC--CCceEEEeecccCCCC-CCcchHHHHHHHH
Confidence 47899999999999999887 47899999999999999999988777 4689999999887654 6999999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+.+. ...+ ++.+.|+++|.++-..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 98543 3344 8888999998777755
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.5e-12 Score=116.42 Aligned_cols=100 Identities=18% Similarity=0.254 Sum_probs=73.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeC----CHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITL----SPVQAQRANALAAARGLADKVSFQVG-DALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~----s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~~~~~~~fD~V~~ 232 (380)
++.+|||||||+|.++..+++. .+|+|+|+ ++.+++.+. ....+ .+++.++++ |+..++ .++||+|++
T Consensus 82 ~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~-~~~v~~~~~~D~~~l~--~~~fD~V~s 154 (305)
T 2p41_A 82 PEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYG-WNLVRLQSGVDVFFIP--PERCDTLLC 154 (305)
T ss_dssp CCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTT-GGGEEEECSCCTTTSC--CCCCSEEEE
T ss_pred CCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcC-CCCeEEEeccccccCC--cCCCCEEEE
Confidence 4789999999999999999986 58999999 554432111 00111 146899999 888765 578999999
Q ss_pred ccccC---CCCCHH---HHHHHHHHhcCCCcEEEEEec
Q 016921 233 MESGE---HMPDKS---KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~~~l~---~~~~~~---~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..++. +..+.. .++..+.++|||||.+++..+
T Consensus 155 d~~~~~g~~~~d~~~~l~~L~~~~~~LkpGG~~v~kv~ 192 (305)
T 2p41_A 155 DIGESSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVL 192 (305)
T ss_dssp CCCCCCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEES
T ss_pred CCccccCcchhhHHHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 76653 112222 578999999999999988654
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.3e-10 Score=109.16 Aligned_cols=97 Identities=19% Similarity=0.295 Sum_probs=79.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++++...++. ++|+++|+.++. + .+||+|++.-.-..
T Consensus 291 ~~~VLDlgcG~G~~sl~la~~-~~~V~gvD~s~~ai~~A~~n~~~ngl~--v~~~~~d~~~~~-~-~~fD~Vv~dPPr~g 365 (425)
T 2jjq_A 291 GEKILDMYSGVGTFGIYLAKR-GFNVKGFDSNEFAIEMARRNVEINNVD--AEFEVASDREVS-V-KGFDTVIVDPPRAG 365 (425)
T ss_dssp SSEEEEETCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHHTCC--EEEEECCTTTCC-C-TTCSEEEECCCTTC
T ss_pred CCEEEEeeccchHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHcCCc--EEEEECChHHcC-c-cCCCEEEEcCCccc
Confidence 789999999999999999986 789999999999999999999888874 999999999874 2 38999998543221
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...+++.+. .|+|||.++++.
T Consensus 366 ~--~~~~~~~l~-~l~p~givyvsc 387 (425)
T 2jjq_A 366 L--HPRLVKRLN-REKPGVIVYVSC 387 (425)
T ss_dssp S--CHHHHHHHH-HHCCSEEEEEES
T ss_pred h--HHHHHHHHH-hcCCCcEEEEEC
Confidence 1 134555554 589999999875
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.5e-10 Score=105.92 Aligned_cols=87 Identities=22% Similarity=0.274 Sum_probs=75.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+++.+++.+.+.+ +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++... ++++++++|+.+
T Consensus 37 ~i~~~Iv~~l~~~~-----~~~VLEIG~G~G~lT~~La~~-~~~V~aVEid~~li~~a~~~~~~~---~~v~vi~gD~l~ 107 (295)
T 3gru_A 37 NFVNKAVESANLTK-----DDVVLEIGLGKGILTEELAKN-AKKVYVIEIDKSLEPYANKLKELY---NNIEIIWGDALK 107 (295)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCGGGHHHHHHHHHHC---SSEEEEESCTTT
T ss_pred HHHHHHHHhcCCCC-----cCEEEEECCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhccC---CCeEEEECchhh
Confidence 36777777777654 889999999999999999998 889999999999999999988732 589999999999
Q ss_pred CCCCCCCccEEEeccc
Q 016921 220 QPFPDGQFDLVWSMES 235 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~ 235 (380)
+++++.+||.|+++..
T Consensus 108 ~~~~~~~fD~Iv~NlP 123 (295)
T 3gru_A 108 VDLNKLDFNKVVANLP 123 (295)
T ss_dssp SCGGGSCCSEEEEECC
T ss_pred CCcccCCccEEEEeCc
Confidence 8887778999997643
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-13 Score=122.47 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=84.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.+++.+.+.. +.+|||||||+|.++..+++. +.+|+|+|+|+.+++.++++.. ..++++++++|+.++
T Consensus 17 ~~~~i~~~~~~~~-----~~~VLDiG~G~G~~~~~l~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~v~~~~~D~~~~ 87 (245)
T 1yub_A 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCCCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHhc---cCCceEEEECChhhc
Confidence 4566677776554 889999999999999999998 6899999999999998877654 225799999999998
Q ss_pred CCCC-CCccEEEeccc-----------cCCCCCHHHHH----HHHHHhcCCCcEEEEEe
Q 016921 221 PFPD-GQFDLVWSMES-----------GEHMPDKSKFV----SELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~-~~fD~V~~~~~-----------l~~~~~~~~~l----~~~~r~LkpgG~l~~~~ 263 (380)
+++. ++| .|+++-- +.|..+...++ +.+.++|+|||.+.+..
T Consensus 88 ~~~~~~~f-~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 88 QFPNKQRY-KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp TCCCSSEE-EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred CcccCCCc-EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 8764 678 5555421 11122223344 67999999999987754
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-10 Score=108.51 Aligned_cols=117 Identities=15% Similarity=0.125 Sum_probs=91.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--------------------------------------
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (380)
+...++...+... +..|||.+||+|.+++.++... +
T Consensus 189 lAa~ll~l~~~~~-----~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 263 (393)
T 3k0b_A 189 MAAALVLLTSWHP-----DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQP 263 (393)
T ss_dssp HHHHHHHHSCCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhCCCC-----CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCC
Confidence 5556667666654 7899999999999999888753 2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC-CC---CCHHHHHHHHHHhcCC--
Q 016921 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HM---PDKSKFVSELARVTAP-- 255 (380)
Q Consensus 182 ~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~---~~~~~~l~~~~r~Lkp-- 255 (380)
.+|+|+|+++.+++.|++++...|+..++.+.++|+.+++.+ ++||+|+++--.. .+ .+...+++.+.+.||+
T Consensus 264 ~~V~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~~~ 342 (393)
T 3k0b_A 264 LNIIGGDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTE-DEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMP 342 (393)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCC-CCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCC-CCCCEEEECCCCccccCCchhHHHHHHHHHHHHhcCC
Confidence 359999999999999999999999887899999999998754 5899999973221 12 1234566777777766
Q ss_pred CcEEEEEe
Q 016921 256 AGTIIIVT 263 (380)
Q Consensus 256 gG~l~~~~ 263 (380)
||.+++..
T Consensus 343 g~~~~iit 350 (393)
T 3k0b_A 343 TWSVYVLT 350 (393)
T ss_dssp TCEEEEEE
T ss_pred CCEEEEEE
Confidence 89888876
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=3.1e-09 Score=100.21 Aligned_cols=161 Identities=16% Similarity=0.166 Sum_probs=103.5
Q ss_pred CCEEEEECCCcChHHHHHHHH-------------c-----CCEEEEEeCC-----------HHHHHHHHHHHHHcCCCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK-------------F-----GAKCQGITLS-----------PVQAQRANALAAARGLADK 209 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~-------------~-----~~~v~giD~s-----------~~~~~~a~~~~~~~~~~~~ 209 (380)
..+|+|+||++|.++..+... . ..+|+..|+. +.+.+..++ ..|...+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~---~~g~~~~ 129 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEK---ENGRKIG 129 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHH---HTCCCTT
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhh---hccCCCC
Confidence 589999999999999888765 1 2468888987 444433222 2222123
Q ss_pred eEEEEcCCCCC---CCCCCCccEEEeccccCCCCCHH---------------------------------------HHHH
Q 016921 210 VSFQVGDALQQ---PFPDGQFDLVWSMESGEHMPDKS---------------------------------------KFVS 247 (380)
Q Consensus 210 v~~~~~d~~~~---~~~~~~fD~V~~~~~l~~~~~~~---------------------------------------~~l~ 247 (380)
..|+.+....+ .+|+++||+|+++.+|||+.+.. .+|+
T Consensus 130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~ 209 (384)
T 2efj_A 130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLR 209 (384)
T ss_dssp SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 46777766553 58899999999999999985432 1255
Q ss_pred HHHHhcCCCcEEEEEeccCCCC--CCCcc-ccchHHHHHHHH------HhhccCCCC-CCCHHHHHHHHHhC-CCcEEEE
Q 016921 248 ELARVTAPAGTIIIVTWCHRDL--APSEE-SLQPWEQELLKK------ICDAYYLPA-WCSTADYVKLLQSL-SLEDIKA 316 (380)
Q Consensus 248 ~~~r~LkpgG~l~~~~~~~~~~--~~~~~-~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~ll~~a-Gf~~v~~ 316 (380)
..++.|+|||++++...+..+. .+... .+.......... -.+.+..|. +++.++++.+++++ ||++..+
T Consensus 210 ~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~l 289 (384)
T 2efj_A 210 IHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILYL 289 (384)
T ss_dssp HHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEEE
T ss_pred HHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEEE
Confidence 5689999999999998876554 22111 111111111111 122233342 46899999999997 5888887
Q ss_pred EecCCC
Q 016921 317 EDWSQN 322 (380)
Q Consensus 317 ~~~~~~ 322 (380)
+.+...
T Consensus 290 e~~~~~ 295 (384)
T 2efj_A 290 ETFNAP 295 (384)
T ss_dssp EEEEEE
T ss_pred EEEeec
Confidence 765433
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.13 E-value=6.3e-10 Score=105.72 Aligned_cols=117 Identities=18% Similarity=0.106 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--------------------------------------
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (380)
+...++...+... +..|||.+||+|.+++.++... +
T Consensus 182 LAaall~l~~~~~-----~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 256 (384)
T 3ldg_A 182 MAAAIILLSNWFP-----DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQ 256 (384)
T ss_dssp HHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCC
T ss_pred HHHHHHHHhCCCC-----CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCC
Confidence 5555666666554 7899999999999999888653 2
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--cccCCC--CCHHHHHHHHHHhcCC--
Q 016921 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM--ESGEHM--PDKSKFVSELARVTAP-- 255 (380)
Q Consensus 182 ~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~--~~l~~~--~~~~~~l~~~~r~Lkp-- 255 (380)
.+|+|+|+++.+++.|++++...|+..++.|.++|+.+++.+ ++||+|+++ +....- .+...+++++.+.||+
T Consensus 257 ~~v~GvDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~~~ 335 (384)
T 3ldg_A 257 LDISGFDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTN-KINGVLISNPPYGERLLDDKAVDILYNEMGETFAPLK 335 (384)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCC-CCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTTCT
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCcc-CCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhhCC
Confidence 359999999999999999999999988899999999998754 589999997 333211 2346677888888876
Q ss_pred CcEEEEEe
Q 016921 256 AGTIIIVT 263 (380)
Q Consensus 256 gG~l~~~~ 263 (380)
||.+++..
T Consensus 336 g~~~~iit 343 (384)
T 3ldg_A 336 TWSQFILT 343 (384)
T ss_dssp TSEEEEEE
T ss_pred CcEEEEEE
Confidence 99988876
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.10 E-value=5.6e-10 Score=106.30 Aligned_cols=117 Identities=18% Similarity=0.178 Sum_probs=92.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-C--------------------------------------
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-G-------------------------------------- 181 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~-------------------------------------- 181 (380)
+...++...+... +.+|||++||+|.+++.++... +
T Consensus 183 lAa~ll~~~~~~~-----~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~ 257 (385)
T 3ldu_A 183 LAAGLIYLTPWKA-----GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESK 257 (385)
T ss_dssp HHHHHHHTSCCCT-----TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHhhCCCC-----CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCC
Confidence 5555666666544 7899999999999999988763 1
Q ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC-CC---CCHHHHHHHHHHhcCC--
Q 016921 182 AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE-HM---PDKSKFVSELARVTAP-- 255 (380)
Q Consensus 182 ~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~-~~---~~~~~~l~~~~r~Lkp-- 255 (380)
.+|+|+|+++.+++.|++++...++..+++|.++|+.+++.+ ++||+|+++--.. .+ .+...+++++.+.||+
T Consensus 258 ~~V~GvDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~-~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~~~ 336 (385)
T 3ldu_A 258 FKIYGYDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSE-DEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRKLK 336 (385)
T ss_dssp CCEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCS-CBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHTSB
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcC-CCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhhCC
Confidence 479999999999999999999999877899999999998754 6899999965432 12 2345677777778876
Q ss_pred CcEEEEEe
Q 016921 256 AGTIIIVT 263 (380)
Q Consensus 256 gG~l~~~~ 263 (380)
||.+++..
T Consensus 337 g~~~~iit 344 (385)
T 3ldu_A 337 NWSYYLIT 344 (385)
T ss_dssp SCEEEEEE
T ss_pred CCEEEEEE
Confidence 88888876
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.07 E-value=5.5e-10 Score=108.67 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=90.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGL 206 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~giD~s~~~~~~a~~~~~~~~~ 206 (380)
+++.+++.+... ++.+|||.|||+|.++..+++.. ..+++|+|+++.+++.|+.++...|+
T Consensus 159 v~~~mv~~l~~~-----~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~ 233 (445)
T 2okc_A 159 LIQAMVDCINPQ-----MGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 233 (445)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCC-----CCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 344455544433 37899999999999999888752 36799999999999999999887776
Q ss_pred CC-CeEEEEcCCCCCCCCCCCccEEEeccccCCCCC-----------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 207 AD-KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD-----------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 207 ~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~-----------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.. ++.+.++|....+.. ++||+|+++--+.+... ...+++.+.+.|||||++++...
T Consensus 234 ~~~~~~i~~gD~l~~~~~-~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 234 GTDRSPIVCEDSLEKEPS-TLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CSSCCSEEECCTTTSCCS-SCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CcCCCCEeeCCCCCCccc-CCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 43 678899998876543 58999999755443311 13789999999999999988763
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.06 E-value=5e-10 Score=100.47 Aligned_cols=82 Identities=16% Similarity=0.220 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.+++.+.+.. +.+|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .++++++++|+.++
T Consensus 17 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~-~~~V~avEid~~~~~~~~~~~~~---~~~v~~i~~D~~~~ 87 (255)
T 3tqs_A 17 VLQKIVSAIHPQK-----TDTLVEIGPGRGALTDYLLTE-CDNLALVEIDRDLVAFLQKKYNQ---QKNITIYQNDALQF 87 (255)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTTTTHHHHTTT-SSEEEEEECCHHHHHHHHHHHTT---CTTEEEEESCTTTC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEcccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHhh---CCCcEEEEcchHhC
Confidence 5666777777654 889999999999999999987 68999999999999999998854 25899999999998
Q ss_pred CCC----CCCccEEEe
Q 016921 221 PFP----DGQFDLVWS 232 (380)
Q Consensus 221 ~~~----~~~fD~V~~ 232 (380)
+++ +++|| |++
T Consensus 88 ~~~~~~~~~~~~-vv~ 102 (255)
T 3tqs_A 88 DFSSVKTDKPLR-VVG 102 (255)
T ss_dssp CGGGSCCSSCEE-EEE
T ss_pred CHHHhccCCCeE-EEe
Confidence 754 35688 444
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.06 E-value=4.7e-10 Score=106.43 Aligned_cols=115 Identities=19% Similarity=0.194 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~ 214 (380)
......++..+++.+... +.+|||+|||+|.++..+++. ..+|+|+|+|+.+++.|+++++..++ .+++|+.
T Consensus 196 ~~~~~~l~~~~~~~~~~~------~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~-~~v~~~~ 267 (369)
T 3bt7_A 196 AAMNIQMLEWALDVTKGS------KGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI-DNVQIIR 267 (369)
T ss_dssp HHHHHHHHHHHHHHTTTC------CSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC-CSEEEEC
T ss_pred HHHHHHHHHHHHHHhhcC------CCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC-CceEEEE
Confidence 344456667777766432 578999999999999999885 67999999999999999999998888 5899999
Q ss_pred cCCCCCC--CCC--------------CCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQP--FPD--------------GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~--~~~--------------~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+.+.. +.. .+||+|++.--- ..+..++.+.|+++|.++...
T Consensus 268 ~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr------~g~~~~~~~~l~~~g~ivyvs 326 (369)
T 3bt7_A 268 MAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPR------SGLDSETEKMVQAYPRILYIS 326 (369)
T ss_dssp CCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCT------TCCCHHHHHHHTTSSEEEEEE
T ss_pred CCHHHHHHHHhhccccccccccccccCCCCEEEECcCc------cccHHHHHHHHhCCCEEEEEE
Confidence 9987641 111 379999874211 123456777888999988876
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=99.01 E-value=4.9e-09 Score=98.02 Aligned_cols=162 Identities=14% Similarity=0.125 Sum_probs=105.9
Q ss_pred CCCEEEEECCCcChHHHHHHHH----------------c-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKK----------------F-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ- 219 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~----------------~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~- 219 (380)
...+|+|+||++|.++..+... . ..+|+..|+..+.....-+.+.......+..|+.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3578999999999887765443 1 257999999888777665544321000123555555444
Q ss_pred --CCCCCCCccEEEeccccCCCCCH---------------------------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 220 --QPFPDGQFDLVWSMESGEHMPDK---------------------------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 220 --~~~~~~~fD~V~~~~~l~~~~~~---------------------------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-.+|++++|+|+++.++||+.+. ..+|+..++.|+|||++++...
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~ 210 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTIL 210 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEe
Confidence 46889999999999999998542 2348888999999999999988
Q ss_pred cCCCCCCCcc---ccchHHHHHHHHHh----------hccCCCC-CCCHHHHHHHHHhCC-CcEEEEEec
Q 016921 265 CHRDLAPSEE---SLQPWEQELLKKIC----------DAYYLPA-WCSTADYVKLLQSLS-LEDIKAEDW 319 (380)
Q Consensus 265 ~~~~~~~~~~---~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~ll~~aG-f~~v~~~~~ 319 (380)
+..+..+... .+.......+..+. +.+..|. +++.++++.++++.| |++...+.+
T Consensus 211 gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e~~ 280 (359)
T 1m6e_X 211 GRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp ECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEEEE
Confidence 7766433221 11122222232111 1223332 568999999999996 577766544
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.01 E-value=3.7e-09 Score=97.49 Aligned_cols=105 Identities=13% Similarity=0.103 Sum_probs=80.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC---CCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD---GQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~---~~fD~V~~ 232 (380)
++.+|||+|||+|..+..+++.. ..+|+++|+++.+++.++++++..|+ .++.++++|+.+++... ++||.|++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~-~~v~~~~~D~~~~~~~~~~~~~fD~Vl~ 180 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 180 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEeCChHhcCccccccCCCCEEEE
Confidence 48999999999999999999875 47999999999999999999998887 47999999998865322 57999997
Q ss_pred c------cccCCCC-----------CH-------HHHHHHHHHhcCCCcEEEEEec
Q 016921 233 M------ESGEHMP-----------DK-------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~------~~l~~~~-----------~~-------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. +++..-+ +. .+++..+.+.|+ ||+|+.++.
T Consensus 181 D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTC 235 (309)
T 2b9e_A 181 DPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTC 235 (309)
T ss_dssp CCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEES
T ss_pred cCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECC
Confidence 2 2222111 11 235777777776 998888763
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=1.1e-09 Score=105.61 Aligned_cols=108 Identities=18% Similarity=0.280 Sum_probs=81.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++.+++.+... ++.+|||+|||+|.++..++++. +.+++|+|+++.+++.| .++.++++|+.
T Consensus 27 l~~~~~~~~~~~-----~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a----------~~~~~~~~D~~ 91 (421)
T 2ih2_A 27 VVDFMVSLAEAP-----RGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP----------PWAEGILADFL 91 (421)
T ss_dssp HHHHHHHHCCCC-----TTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC----------TTEEEEESCGG
T ss_pred HHHHHHHhhccC-----CCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC----------CCCcEEeCChh
Confidence 455556655432 36799999999999999999874 57999999999988765 36899999998
Q ss_pred CCCCCCCCccEEEecccc---CC-------CCCH-------------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 219 QQPFPDGQFDLVWSMESG---EH-------MPDK-------------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l---~~-------~~~~-------------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.. +.++||+|+++--. .. +.+. ..+++.+.++|+|||++++...
T Consensus 92 ~~~-~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p 165 (421)
T 2ih2_A 92 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 165 (421)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hcC-ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 865 35789999995211 11 2111 2568999999999999998764
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=7.6e-10 Score=100.04 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
..++.+++.+.+.+ + +|||||||+|.++..+++. +.+|+++|+++.+++.+++++.. .+++++++|+.+
T Consensus 34 ~i~~~Iv~~~~~~~-----~-~VLEIG~G~G~lt~~L~~~-~~~V~avEid~~~~~~l~~~~~~----~~v~vi~~D~l~ 102 (271)
T 3fut_A 34 AHLRRIVEAARPFT-----G-PVFEVGPGLGALTRALLEA-GAEVTAIEKDLRLRPVLEETLSG----LPVRLVFQDALL 102 (271)
T ss_dssp HHHHHHHHHHCCCC-----S-CEEEECCTTSHHHHHHHHT-TCCEEEEESCGGGHHHHHHHTTT----SSEEEEESCGGG
T ss_pred HHHHHHHHhcCCCC-----C-eEEEEeCchHHHHHHHHHc-CCEEEEEECCHHHHHHHHHhcCC----CCEEEEECChhh
Confidence 35677777777664 7 9999999999999999997 78999999999999999987742 589999999999
Q ss_pred CCCCCC-CccEEEeccccCCCC
Q 016921 220 QPFPDG-QFDLVWSMESGEHMP 240 (380)
Q Consensus 220 ~~~~~~-~fD~V~~~~~l~~~~ 240 (380)
+++++. .+|.|+++. -+++.
T Consensus 103 ~~~~~~~~~~~iv~Nl-Py~is 123 (271)
T 3fut_A 103 YPWEEVPQGSLLVANL-PYHIA 123 (271)
T ss_dssp SCGGGSCTTEEEEEEE-CSSCC
T ss_pred CChhhccCccEEEecC-ccccc
Confidence 876542 688877654 34443
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=103.86 Aligned_cols=101 Identities=13% Similarity=0.005 Sum_probs=84.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCC-eEEEEcCCCCCC--CCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-G-AKCQGITLSPVQAQRANALAAARGLADK-VSFQVGDALQQP--FPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~-~~v~giD~s~~~~~~a~~~~~~~~~~~~-v~~~~~d~~~~~--~~~~~fD~V~~~ 233 (380)
+.+|||++||+|.+++.++.+. + .+|+++|+++..++.++++++.+++.++ ++++.+|+.+.. ...++||+|++.
T Consensus 53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~lD 132 (392)
T 3axs_A 53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDLD 132 (392)
T ss_dssp CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEEC
T ss_pred CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEEC
Confidence 7899999999999999999875 4 6899999999999999999999998766 999999986541 124679999975
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ......++..+.+.|++||.|+++.
T Consensus 133 P----~g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 133 P----FGTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp C----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred C----CcCHHHHHHHHHHHhCCCCEEEEEe
Confidence 4 1233568999999999999888865
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=101.06 Aligned_cols=88 Identities=20% Similarity=0.240 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++.++..+.+.+ +.+|||+|||+|..+..+++.. +.+|+|+|+|+.+++.|++++...+ .++.++++|+.+
T Consensus 14 Ll~e~l~~L~~~~-----g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g--~~v~~v~~d~~~ 86 (301)
T 1m6y_A 14 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 86 (301)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhcCCCC-----CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEECCHHH
Confidence 4556666666544 8899999999999999999987 6899999999999999999987766 589999999987
Q ss_pred CC--CC---CCCccEEEeccc
Q 016921 220 QP--FP---DGQFDLVWSMES 235 (380)
Q Consensus 220 ~~--~~---~~~fD~V~~~~~ 235 (380)
++ +. .++||.|++...
T Consensus 87 l~~~l~~~g~~~~D~Vl~D~g 107 (301)
T 1m6y_A 87 ADFLLKTLGIEKVDGILMDLG 107 (301)
T ss_dssp HHHHHHHTTCSCEEEEEEECS
T ss_pred HHHHHHhcCCCCCCEEEEcCc
Confidence 64 11 158999997543
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.2e-09 Score=103.50 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=82.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---------------CCCCCeEEEEcCCCCCC-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---------------GLADKVSFQVGDALQQP- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~---------------~~~~~v~~~~~d~~~~~- 221 (380)
+.+|||+|||+|..++.++.+. +.+|+++|+++.+++.++++++.. ++. +++++++|+..+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~-~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEK-TIVINHDDANRLMA 126 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSS-EEEEEESCHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCC-ceEEEcCcHHHHHH
Confidence 7899999999999999999986 568999999999999999999887 764 4999999987642
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...++||+|++. -. .....++..+.+.||+||.++++.
T Consensus 127 ~~~~~fD~I~lD-P~---~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLD-PF---GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEEC-CS---SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeC-CC---CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 113579999953 22 233678999999999999888764
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.92 E-value=4.4e-08 Score=84.09 Aligned_cols=98 Identities=17% Similarity=0.089 Sum_probs=78.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC--CCCeEEEEcCCCCC---------------C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL--ADKVSFQVGDALQQ---------------P 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~--~~~v~~~~~d~~~~---------------~ 221 (380)
..+|||+|| |..+..+++..+.+|+.+|.+++..+.|++.++..|+ ..+++++.+|+.+. +
T Consensus 31 a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~ 108 (202)
T 3cvo_A 31 AEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYP 108 (202)
T ss_dssp CSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTT
T ss_pred CCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHH
Confidence 679999998 4677888873368999999999999999999999998 78999999997542 1
Q ss_pred --------C-CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 --------F-PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 --------~-~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ..++||+|++..- .....+..+.+.|+|||.|++-+
T Consensus 109 ~~~~~i~~~~~~~~fDlIfIDg~-----k~~~~~~~~l~~l~~GG~Iv~DN 154 (202)
T 3cvo_A 109 DYPLAVWRTEGFRHPDVVLVDGR-----FRVGCALATAFSITRPVTLLFDD 154 (202)
T ss_dssp HHHHGGGGCTTCCCCSEEEECSS-----SHHHHHHHHHHHCSSCEEEEETT
T ss_pred HHhhhhhccccCCCCCEEEEeCC-----CchhHHHHHHHhcCCCeEEEEeC
Confidence 1 2378999998763 23467777889999999996643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.5e-08 Score=101.20 Aligned_cols=101 Identities=15% Similarity=0.093 Sum_probs=77.5
Q ss_pred CCCEEEEECCCcChHHHHHH---HHcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLA---KKFGA--KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~---~~~~~--~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~ 232 (380)
....|||||||+|.+....+ ++.+. +|++||-|+ +...+++..+.+++.++|+++.+|++++..| +++|+|++
T Consensus 357 ~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LP-EKVDIIVS 434 (637)
T 4gqb_A 357 NVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAP-EKADIIVS 434 (637)
T ss_dssp CEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCS-SCEEEEEC
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCC-cccCEEEE
Confidence 35689999999999854443 33333 789999997 6677888888899999999999999998765 78999997
Q ss_pred ccccCCC--CCHHHHHHHHHHhcCCCcEEE
Q 016921 233 MESGEHM--PDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 233 ~~~l~~~--~~~~~~l~~~~r~LkpgG~l~ 260 (380)
-.+=..+ .....++....+.|||||.++
T Consensus 435 EwMG~fLl~E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 435 ELLGSFADNELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCCBTTBGGGCHHHHHHHHGGGEEEEEEEE
T ss_pred EcCcccccccCCHHHHHHHHHhcCCCcEEc
Confidence 4322222 223467888889999999864
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-10 Score=102.24 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=65.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH-------HHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-CCC--CCc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP-------VQAQRANALAAARGLADKVSFQVGDALQQ-P-FPD--GQF 227 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~-------~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-~~~--~~f 227 (380)
+.+|||+|||+|..+..++.. +++|+|+|+++ .+++.|++++...++..+++++++|+.++ + +++ ++|
T Consensus 84 ~~~VLDlgcG~G~~a~~lA~~-g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~~f 162 (258)
T 2r6z_A 84 HPTVWDATAGLGRDSFVLASL-GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQGKP 162 (258)
T ss_dssp CCCEEETTCTTCHHHHHHHHT-TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHCCC
T ss_pred cCeEEEeeCccCHHHHHHHHh-CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCCCc
Confidence 689999999999999999986 78999999999 99999988876666655699999999874 2 334 789
Q ss_pred cEEEeccccCC
Q 016921 228 DLVWSMESGEH 238 (380)
Q Consensus 228 D~V~~~~~l~~ 238 (380)
|+|++.-.+.+
T Consensus 163 D~V~~dP~~~~ 173 (258)
T 2r6z_A 163 DIVYLDPMYPE 173 (258)
T ss_dssp SEEEECCCC--
T ss_pred cEEEECCCCCC
Confidence 99999766554
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.85 E-value=6.5e-09 Score=94.39 Aligned_cols=72 Identities=18% Similarity=0.267 Sum_probs=60.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE----EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK----CQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~----v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
.++.+++.+.+.. +.+|||||||+|.++..+++. +.. |+|+|+++.|++.++++. ..+++++++|
T Consensus 30 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~~La~~-~~~~~~~V~avDid~~~l~~a~~~~-----~~~v~~i~~D 98 (279)
T 3uzu_A 30 VIDAIVAAIRPER-----GERMVEIGPGLGALTGPVIAR-LATPGSPLHAVELDRDLIGRLEQRF-----GELLELHAGD 98 (279)
T ss_dssp HHHHHHHHHCCCT-----TCEEEEECCTTSTTHHHHHHH-HCBTTBCEEEEECCHHHHHHHHHHH-----GGGEEEEESC
T ss_pred HHHHHHHhcCCCC-----cCEEEEEccccHHHHHHHHHh-CCCcCCeEEEEECCHHHHHHHHHhc-----CCCcEEEECC
Confidence 5566777776654 889999999999999999987 455 999999999999999883 2579999999
Q ss_pred CCCCCCC
Q 016921 217 ALQQPFP 223 (380)
Q Consensus 217 ~~~~~~~ 223 (380)
+.+++++
T Consensus 99 ~~~~~~~ 105 (279)
T 3uzu_A 99 ALTFDFG 105 (279)
T ss_dssp GGGCCGG
T ss_pred hhcCChh
Confidence 9998754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.7e-08 Score=103.30 Aligned_cols=118 Identities=18% Similarity=0.183 Sum_probs=88.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc----------------------------------------
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------------------------------------- 180 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------------------------------------- 180 (380)
+...++...+... +..|||.+||+|.+++.++...
T Consensus 178 LAa~ll~~~~~~~-----~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~ 252 (703)
T 3v97_A 178 LAAAIVMRSGWQP-----GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGL 252 (703)
T ss_dssp HHHHHHHHTTCCT-----TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCC-----CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhcc
Confidence 5556666666544 7899999999999998887642
Q ss_pred ---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEec--cccCCCC--CHHHHHH---H
Q 016921 181 ---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSM--ESGEHMP--DKSKFVS---E 248 (380)
Q Consensus 181 ---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~--~~l~~~~--~~~~~l~---~ 248 (380)
...++|+|+++.+++.|++++...|+...+.|.++|+.++. ...++||+|+++ +....-. +...+++ +
T Consensus 253 ~~~~~~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~ 332 (703)
T 3v97_A 253 AEYSSHFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGR 332 (703)
T ss_dssp HHCCCCEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHH
T ss_pred ccCCccEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHH
Confidence 15799999999999999999999999878999999998873 333489999997 3322211 2334444 4
Q ss_pred HHHhcCCCcEEEEEe
Q 016921 249 LARVTAPAGTIIIVT 263 (380)
Q Consensus 249 ~~r~LkpgG~l~~~~ 263 (380)
+.+.+.|||.+++..
T Consensus 333 ~lk~~~~g~~~~ilt 347 (703)
T 3v97_A 333 IMKNQFGGWNLSLFS 347 (703)
T ss_dssp HHHHHCTTCEEEEEE
T ss_pred HHHhhCCCCeEEEEe
Confidence 455556899998865
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.8e-08 Score=90.13 Aligned_cols=100 Identities=18% Similarity=0.185 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
..++.+++.+.+.. +.+|||||||+|.++..+++....+|+|+|+++.+++.++++ + ..+++++++|+.+
T Consensus 18 ~i~~~iv~~~~~~~-----~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~-~~~v~~i~~D~~~ 87 (249)
T 3ftd_A 18 GVLKKIAEELNIEE-----GNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----G-DERLEVINEDASK 87 (249)
T ss_dssp HHHHHHHHHTTCCT-----TCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----C-CTTEEEECSCTTT
T ss_pred HHHHHHHHhcCCCC-----cCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----c-CCCeEEEEcchhh
Confidence 35677777776654 889999999999999999987338999999999999999876 1 2579999999999
Q ss_pred CCCCCCCccEEEeccccCCCCCHHHHHHHHHH
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDKSKFVSELAR 251 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r 251 (380)
+++++..-+.++..+.-+++. ..++.++.+
T Consensus 88 ~~~~~~~~~~~vv~NlPy~i~--~~il~~ll~ 117 (249)
T 3ftd_A 88 FPFCSLGKELKVVGNLPYNVA--SLIIENTVY 117 (249)
T ss_dssp CCGGGSCSSEEEEEECCTTTH--HHHHHHHHH
T ss_pred CChhHccCCcEEEEECchhcc--HHHHHHHHh
Confidence 876542113344444444443 234444444
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-09 Score=100.76 Aligned_cols=73 Identities=21% Similarity=0.124 Sum_probs=64.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcCCCCC-CC-CCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGDALQQ-PF-PDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d~~~~-~~-~~~~fD~V~~~ 233 (380)
+.+|||+|||+|..+..+++. +.+|+++|+|+.+++.|++++... |+ .+++++++|+.+. +. ++++||+|++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~-g~~V~~VD~s~~~l~~Ar~N~~~~~~gl-~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSK-ASQGIYIERNDETAVAARHNIPLLLNEG-KDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHSCTT-CEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCEEEEeCCCchHHHHHHHhc-CCEEEEEECCHHHHHHHHHhHHHhccCC-CcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 789999999999999999886 789999999999999999999887 77 6899999999874 31 23689999983
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.76 E-value=2.2e-08 Score=99.47 Aligned_cols=107 Identities=14% Similarity=0.105 Sum_probs=82.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHHHHcCCCC----CeEEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALAAARGLAD----KVSFQV 214 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-------------------~~~v~giD~s~~~~~~a~~~~~~~~~~~----~v~~~~ 214 (380)
++.+|||.|||+|.++..+++.. ...++|+|+++.++..|+.++...+... ++.+.+
T Consensus 169 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~~~~~~~~~I~~ 248 (541)
T 2ar0_A 169 PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIEGNLDHGGAIRL 248 (541)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCCCBGGGTBSEEE
T ss_pred CCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCCccccccCCeEe
Confidence 37899999999999998887753 1379999999999999999887777643 277899
Q ss_pred cCCCCCC-CCCCCccEEEeccccCCCC-------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 016921 215 GDALQQP-FPDGQFDLVWSMESGEHMP-------------D-KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 215 ~d~~~~~-~~~~~fD~V~~~~~l~~~~-------------~-~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|....+ .+.++||+|+++--+.... + ...+++.+.+.|||||++.+...
T Consensus 249 gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 249 GNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp SCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 9986643 3457899999864332221 1 23789999999999999888763
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.74 E-value=9.7e-09 Score=92.08 Aligned_cols=129 Identities=19% Similarity=0.212 Sum_probs=87.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------C------CEEEEEeCCH---HHHH-----------HHHHHHHHcC-----
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-------G------AKCQGITLSP---VQAQ-----------RANALAAARG----- 205 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-------~------~~v~giD~s~---~~~~-----------~a~~~~~~~~----- 205 (380)
++.+|||||+|+|..+..+++.. . .+++++|..| +++. .|++.+....
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 36799999999999998876542 1 4899999876 4444 4555554310
Q ss_pred -----C---CCCeEEEEcCCCC-CC-CCC---CCccEEEecc-ccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCC
Q 016921 206 -----L---ADKVSFQVGDALQ-QP-FPD---GQFDLVWSME-SGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDL 269 (380)
Q Consensus 206 -----~---~~~v~~~~~d~~~-~~-~~~---~~fD~V~~~~-~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~ 269 (380)
+ ..+++++.+|+.+ ++ .++ ..||+|+... .-...++ ...+++.++++|+|||+|+. ++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~l~~~L~pGG~l~t--ysa--- 214 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLAT--FTS--- 214 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHHHHHHEEEEEEEEE--SCC---
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcCHHHHHHHHHHcCCCcEEEE--EeC---
Confidence 1 1357789999876 33 222 2799999853 2222233 26799999999999999885 210
Q ss_pred CCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 270 APSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
...++..|+++||++.....+.
T Consensus 215 -----------------------------a~~vrr~L~~aGF~v~~~~g~~ 236 (257)
T 2qy6_A 215 -----------------------------AGFVRRGLQEAGFTMQKRKGFG 236 (257)
T ss_dssp -----------------------------BHHHHHHHHHHTEEEEEECCST
T ss_pred -----------------------------CHHHHHHHHHCCCEEEeCCCCC
Confidence 1346778889999988765543
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.72 E-value=6.9e-09 Score=92.94 Aligned_cols=96 Identities=23% Similarity=0.238 Sum_probs=68.0
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc-------C-CCCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR-------G-LADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~-------~-~~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
.+|||++||+|..+..++.. +++|+++|+++.+.+.++..++.. + +..+++++++|+.++ +...++||+|
T Consensus 90 ~~VLDl~~G~G~dal~lA~~-g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDvV 168 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEEcCCcCCHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCEE
Confidence 89999999999999999998 789999999998877666654322 1 224699999998763 3222479999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCc
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAG 257 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG 257 (380)
++.-.+.+- ...+.+++..++|++.+
T Consensus 169 ~lDP~y~~~-~~saavkk~~~~lr~l~ 194 (258)
T 2oyr_A 169 YLDPMFPHK-QKSALVKKEMRVFQSLV 194 (258)
T ss_dssp EECCCCCCC-CC-----HHHHHHHHHS
T ss_pred EEcCCCCCc-ccchHHHHHHHHHHHhh
Confidence 997666553 33355666667776654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-08 Score=98.86 Aligned_cols=100 Identities=16% Similarity=0.121 Sum_probs=74.2
Q ss_pred CCEEEEECCCcChHHHHHHHH---cC-----------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK---FG-----------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP- 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~~-----------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~- 223 (380)
+..|||||||+|.+....+.. .+ .+|++||.++......+.+.. .++.++|+++.+|++++..+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence 568999999999996433221 12 389999999977765555554 67878899999999998653
Q ss_pred ----CCCccEEEeccccCCCCC---HHHHHHHHHHhcCCCcEEE
Q 016921 224 ----DGQFDLVWSMESGEHMPD---KSKFVSELARVTAPAGTII 260 (380)
Q Consensus 224 ----~~~fD~V~~~~~l~~~~~---~~~~l~~~~r~LkpgG~l~ 260 (380)
.+++|+|++-.. ..+.+ ....+..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElm-Gsfl~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELL-GSFGDNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCC-BTTBGGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecc-ccccchhccHHHHHHHHHhCCCCcEEE
Confidence 589999997544 33322 2467888889999999754
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=91.28 Aligned_cols=72 Identities=17% Similarity=0.174 Sum_probs=58.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCE--EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAK--CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~--v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++.+++.+.+.. +.+|||||||+|.++. ++ . +.+ |+++|+++.|++.++++.... ++++++++|+.
T Consensus 9 i~~~iv~~~~~~~-----~~~VLEIG~G~G~lt~-l~-~-~~~~~v~avEid~~~~~~a~~~~~~~---~~v~~i~~D~~ 77 (252)
T 1qyr_A 9 VIDSIVSAINPQK-----GQAMVEIGPGLAALTE-PV-G-ERLDQLTVIELDRDLAARLQTHPFLG---PKLTIYQQDAM 77 (252)
T ss_dssp HHHHHHHHHCCCT-----TCCEEEECCTTTTTHH-HH-H-TTCSCEEEECCCHHHHHHHHTCTTTG---GGEEEECSCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEEECCCCcHHHH-hh-h-CCCCeEEEEECCHHHHHHHHHHhccC---CceEEEECchh
Confidence 5666677766654 8899999999999999 65 4 466 999999999999998866432 47999999999
Q ss_pred CCCCC
Q 016921 219 QQPFP 223 (380)
Q Consensus 219 ~~~~~ 223 (380)
+++++
T Consensus 78 ~~~~~ 82 (252)
T 1qyr_A 78 TFNFG 82 (252)
T ss_dssp GCCHH
T ss_pred hCCHH
Confidence 88654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.7e-08 Score=86.37 Aligned_cols=115 Identities=14% Similarity=0.131 Sum_probs=75.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+.++.+...++ ++.+|||||||+|.|+..++++.+ ..++|+|++..+....... ...+ .++.....+++.
T Consensus 62 KL~ei~ek~~l~-----~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g--~~ii~~~~~~dv 133 (277)
T 3evf_A 62 KLRWFHERGYVK-----LEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLG--WNIITFKDKTDI 133 (277)
T ss_dssp HHHHHHHTTSSC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTT--GGGEEEECSCCT
T ss_pred HHHHHHHhCCCC-----CCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCC--CCeEEEecccee
Confidence 445555553344 478999999999999999887643 4688888874321000000 0001 145556666655
Q ss_pred CCCCCCCccEEEeccccCCCCCH-------HHHHHHHHHhcCCC-cEEEEEec
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
..+++++||+|++..+.. .... ..+++.+.++|+|| |.+++-.|
T Consensus 134 ~~l~~~~~DlVlsD~apn-sG~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf 185 (277)
T 3evf_A 134 HRLEPVKCDTLLCDIGES-SSSSVTEGERTVRVLDTVEKWLACGVDNFCVKVL 185 (277)
T ss_dssp TTSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEES
T ss_pred hhcCCCCccEEEecCccC-cCchHHHHHHHHHHHHHHHHHhCCCCCeEEEEec
Confidence 566788999999976555 3221 13568889999999 99999664
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.2e-07 Score=85.97 Aligned_cols=105 Identities=15% Similarity=0.161 Sum_probs=82.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~-~~~~~~fD~V~~ 232 (380)
+.+||=||.|.|..+..+++.. ..+|+.+|+++.+++.+++.+... + -.++++++.+|+... .-..++||+|+.
T Consensus 84 pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvIi~ 163 (294)
T 3o4f_A 84 AKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVIIS 163 (294)
T ss_dssp CCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEEEE
T ss_pred CCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEEEE
Confidence 7899999999999999999865 579999999999999999987542 1 136899999999875 334578999997
Q ss_pred ccccCCC-C---CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHM-P---DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~-~---~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...=..- . -...+++.+++.|+|||+++...
T Consensus 164 D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 164 DCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp SCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 4321111 1 12578999999999999999864
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-07 Score=94.12 Aligned_cols=104 Identities=19% Similarity=0.210 Sum_probs=79.9
Q ss_pred CEEEEECCCcChHHHHHHHHc----------------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-C
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF----------------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-F 222 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~----------------~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~ 222 (380)
.+|||.+||+|.+...+++.. ...++|+|+++.++..|+.++...|+..++.+.++|....+ +
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~i~i~~gDtL~~~~~ 325 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFNFGKKNADSFLDDQH 325 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCBCCSSSCCTTTSCSC
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcccceeccchhcCccc
Confidence 499999999999988876532 35899999999999999999888887666555888876543 4
Q ss_pred CCCCccEEEeccccCC-------------------------CC---C-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEH-------------------------MP---D-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~-------------------------~~---~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.+||+|+++=-+.. ++ + .-.+++.+.+.|+|||++.+..
T Consensus 326 ~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVl 395 (544)
T 3khk_A 326 PDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLL 395 (544)
T ss_dssp TTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEe
Confidence 5679999998522211 11 1 1268999999999999988876
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.2e-07 Score=89.27 Aligned_cols=107 Identities=17% Similarity=0.111 Sum_probs=84.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC--C-CCCCCccE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ--P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~--~-~~~~~fD~ 229 (380)
++.+|||.+||+|.+...+++.. ...++|+|+++.+...|+.++...|+. .++.+.++|.... | .+..+||+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 47899999999999999888874 468999999999999999998878774 4688999998765 3 34678999
Q ss_pred EEecc--ccCC-----------------CC---C-HHHHHHHHHHhcC-CCcEEEEEec
Q 016921 230 VWSME--SGEH-----------------MP---D-KSKFVSELARVTA-PAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~--~l~~-----------------~~---~-~~~~l~~~~r~Lk-pgG~l~~~~~ 264 (380)
|+++= ...+ ++ + .-.+++.+.+.|+ |||++.+...
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLP 359 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEec
Confidence 99851 1110 11 1 1258999999999 9999888763
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.2e-06 Score=81.44 Aligned_cols=94 Identities=16% Similarity=0.149 Sum_probs=68.3
Q ss_pred CCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
.++.+|||+||++|.|+..++++ +..|++||+.+-. ... . . .++|.++++|+.....+.++||+|+|..+.
T Consensus 210 ~~G~~vlDLGAaPGGWT~~l~~r-g~~V~aVD~~~l~-~~l----~--~-~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 210 ANGMWAVDLGACPGGWTYQLVKR-NMWVYSVDNGPMA-QSL----M--D-TGQVTWLREDGFKFRPTRSNISWMVCDMVE 280 (375)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHT-TCEEEEECSSCCC-HHH----H--T-TTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred CCCCEEEEeCcCCCHHHHHHHHC-CCEEEEEEhhhcC-hhh----c--c-CCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence 35999999999999999999987 8899999986421 111 1 1 258999999999887667889999986543
Q ss_pred CCCCCHHHHHHHHHHhcCCC---cEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPA---GTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~Lkpg---G~l~~~~ 263 (380)
.+..++..+.+.|..| +.++...
T Consensus 281 ----~p~~~~~l~~~wl~~~~~~~aI~~lK 306 (375)
T 4auk_A 281 ----KPAKVAALMAQWLVNGWCRETIFNLK 306 (375)
T ss_dssp ----CHHHHHHHHHHHHHTTSCSEEEEEEE
T ss_pred ----ChHHhHHHHHHHHhccccceEEEEEE
Confidence 4555555555555544 5444443
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.46 E-value=4.6e-07 Score=81.92 Aligned_cols=104 Identities=13% Similarity=0.119 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHH--------------------------HHHHHHHHHHHcCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPV--------------------------QAQRANALAAARGL 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~------~~~v~giD~s~~--------------------------~~~~a~~~~~~~~~ 206 (380)
+.+|||+|+..|..+..++... +.+|+++|..+. .++.+++++++.|+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 6799999999999998887653 568999996421 46778999999998
Q ss_pred C-CCeEEEEcCCCC-CC-CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 207 A-DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 207 ~-~~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ++++++.+|+.+ ++ ++.++||+|++-.-. .......++.+...|+|||++++-++
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--YESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--HHHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--cccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 4 899999999866 33 445789999987532 12345789999999999999888664
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-07 Score=79.70 Aligned_cols=84 Identities=18% Similarity=0.228 Sum_probs=69.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
+++.+++.+.+++ +..+||.+||.|..+..++++ +.+|+|+|.++.+++.|++ +.. +++.++++++.++
T Consensus 10 Ll~e~le~L~~~~-----gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~----~rv~lv~~~f~~l 78 (285)
T 1wg8_A 10 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL----PGLTVVQGNFRHL 78 (285)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC----TTEEEEESCGGGH
T ss_pred HHHHHHHhhCCCC-----CCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc----CCEEEEECCcchH
Confidence 4667777776654 889999999999999999998 8899999999999999988 532 4899999999886
Q ss_pred C-----CCCCCccEEEeccc
Q 016921 221 P-----FPDGQFDLVWSMES 235 (380)
Q Consensus 221 ~-----~~~~~fD~V~~~~~ 235 (380)
+ ...+++|.|++...
T Consensus 79 ~~~L~~~g~~~vDgIL~DLG 98 (285)
T 1wg8_A 79 KRHLAALGVERVDGILADLG 98 (285)
T ss_dssp HHHHHHTTCSCEEEEEEECS
T ss_pred HHHHHHcCCCCcCEEEeCCc
Confidence 3 22367999997543
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-07 Score=82.67 Aligned_cols=115 Identities=17% Similarity=0.027 Sum_probs=73.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+.++.++..+. ++.+|||||||.|.|+..++++. ...|+|+|++..+...+... .....++.....+..-
T Consensus 78 KL~ei~eK~~Lk-----~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~---~~~g~~ii~~~~~~dv 149 (282)
T 3gcz_A 78 KLRWMEERGYVK-----PTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR---TTLGWNLIRFKDKTDV 149 (282)
T ss_dssp HHHHHHHTTSCC-----CCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC---CBTTGGGEEEECSCCG
T ss_pred HHHHHHHhcCCC-----CCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc---ccCCCceEEeeCCcch
Confidence 445555554444 48899999999999999988754 34789999986532211100 0001133334433332
Q ss_pred CCCCCCCccEEEeccccCCCCCH-------HHHHHHHHHhcCCC--cEEEEEec
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA--GTIIIVTW 264 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg--G~l~~~~~ 264 (380)
..++.+++|+|+|..+.. .... ..+++-+.++|+|| |.+++-.|
T Consensus 150 ~~l~~~~~DvVLSDmApn-sG~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF 202 (282)
T 3gcz_A 150 FNMEVIPGDTLLCDIGES-SPSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVL 202 (282)
T ss_dssp GGSCCCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred hhcCCCCcCEEEecCccC-CCChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEe
Confidence 345578999999977665 4321 13577788999999 99999765
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=7.2e-06 Score=83.26 Aligned_cols=106 Identities=8% Similarity=0.014 Sum_probs=74.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC----CEEEEEeCCHHHHHHHHHH--HHH----cCCCCCeEEEEcCCCCC-CCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG----AKCQGITLSPVQAQRANAL--AAA----RGLADKVSFQVGDALQQ-PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~----~~v~giD~s~~~~~~a~~~--~~~----~~~~~~v~~~~~d~~~~-~~~~~~ 226 (380)
++.+|||.|||+|.++..+++..+ .+++|+|+++.+++.|+.+ +.. .+. ....+...|+... +...++
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi-~~~~I~~dD~L~~~~~~~~k 399 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSN-NAPTITGEDVCSLNPEDFAN 399 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTT-BCCEEECCCGGGCCGGGGTT
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCC-CcceEEecchhcccccccCC
Confidence 478999999999999999988653 4799999999999998433 322 122 1235556666553 223578
Q ss_pred ccEEEeccccCC--CC--------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEH--MP--------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~--~~--------------------------~-~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
||+|+++=-... -. + ...+++.+.+.|+|||++.+...
T Consensus 400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP 466 (878)
T 3s1s_A 400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMP 466 (878)
T ss_dssp EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEC
Confidence 999998532211 00 1 23467889999999999998763
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.5e-06 Score=75.46 Aligned_cols=116 Identities=17% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.+.++.+. .+- .++.+||||||++|.|+..+++..+ ..|+|+|+...+...... . .....++.....+..-
T Consensus 69 KL~ei~ek-~l~----~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~--~~~~~~iv~~~~~~di 140 (300)
T 3eld_A 69 KIRWLHER-GYL----RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-M--QTLGWNIVKFKDKSNV 140 (300)
T ss_dssp HHHHHHHH-TSC----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-C--CBTTGGGEEEECSCCT
T ss_pred HHHHHHHh-CCC----CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-c--cccCCceEEeecCcee
Confidence 44455555 432 2589999999999999999998643 478899997542110000 0 0000123333333222
Q ss_pred CCCCCCCccEEEeccccCCCCCH-------HHHHHHHHHhcCCC-cEEEEEecc
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPA-GTIIIVTWC 265 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~Lkpg-G~l~~~~~~ 265 (380)
..+..+.+|+|++..+-. .... ..++.-+.++|+|| |.+++-.|.
T Consensus 141 ~~l~~~~~DlVlsD~APn-sG~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~ 193 (300)
T 3eld_A 141 FTMPTEPSDTLLCDIGES-SSNPLVERDRTMKVLENFERWKHVNTENFCVKVLA 193 (300)
T ss_dssp TTSCCCCCSEEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred eecCCCCcCEEeecCcCC-CCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence 234568999999966555 3322 24577788999999 999997653
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.1e-06 Score=70.37 Aligned_cols=87 Identities=17% Similarity=0.169 Sum_probs=64.0
Q ss_pred CCEEEEECCCcC-hHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCC-CCccEEEecccc
Q 016921 159 PKNVVDVGCGIG-GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPD-GQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG-~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~fD~V~~~~~l 236 (380)
+.+|||||||.| ..+..|+++.+..|+++|+++..+ .+++.|+.+..... +.||+|++..-
T Consensus 36 ~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~Av----------------~~v~dDiF~P~~~~Y~~~DLIYsirP- 98 (153)
T 2k4m_A 36 GTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSHG----------------GIVRDDITSPRMEIYRGAALIYSIRP- 98 (153)
T ss_dssp SSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSST----------------TEECCCSSSCCHHHHTTEEEEEEESC-
T ss_pred CCcEEEEccCCChHHHHHHHHhCCCeEEEEECCcccc----------------ceEEccCCCCcccccCCcCEEEEcCC-
Confidence 679999999999 699999985599999999998543 28899998743211 48999977542
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
-++.+..+.++++. -|.-+++..++.
T Consensus 99 --P~El~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 99 --PAEIHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp --CTTTHHHHHHHHHH--HTCEEEEECBTT
T ss_pred --CHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 24556666666664 367788876543
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.7e-06 Score=77.43 Aligned_cols=108 Identities=18% Similarity=0.163 Sum_probs=82.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCC-----CCeEEEEcCCCCCC-CCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA-----DKVSFQVGDALQQP-FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~-----~~v~~~~~d~~~~~-~~~~~fD~V 230 (380)
++.+|||+.+|.|.=+..+++.. +..|+++|+++.-+...++++...+.. .++.+...|+..++ ...+.||.|
T Consensus 148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~V 227 (359)
T 4fzv_A 148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDRV 227 (359)
T ss_dssp TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEEE
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCEE
Confidence 49999999999999999998864 357999999999999999988776542 47888888987753 345789999
Q ss_pred Eec----c----ccCCCCC------H----------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 231 WSM----E----SGEHMPD------K----------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 231 ~~~----~----~l~~~~~------~----------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++. . ++..-++ . .++|..+.+.|||||+|+-++-+
T Consensus 228 LlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 228 LVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred EECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 952 2 1111111 0 25788899999999999988743
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=71.45 Aligned_cols=115 Identities=17% Similarity=0.277 Sum_probs=76.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~ 218 (380)
.+..+.+...+. ++.+||||||++|.|+..++...+ ..|+|+|+...-.+.-+ .....++ .-|.|... |+.
T Consensus 82 KL~ei~~~~~l~-----~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~-~~~ql~w-~lV~~~~~~Dv~ 154 (321)
T 3lkz_A 82 KLRWLVERRFLE-----PVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQ-LVQSYGW-NIVTMKSGVDVF 154 (321)
T ss_dssp HHHHHHHTTSCC-----CCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCC-CCCBTTG-GGEEEECSCCTT
T ss_pred HHHHHHHhcCCC-----CCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcc-hhhhcCC-cceEEEeccCHh
Confidence 455555554454 388999999999999998887764 46999999765110000 0000111 23778877 877
Q ss_pred CCCCCCCCccEEEeccccCCCCCHH-------HHHHHHHHhcCCC-cEEEEEecc
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKS-------KFVSELARVTAPA-GTIIIVTWC 265 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~-------~~l~~~~r~Lkpg-G~l~~~~~~ 265 (380)
.++ ..++|+|+|.-+ +--+++. .+|+-+.+.|++| |.++|-.+.
T Consensus 155 ~l~--~~~~D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~ 206 (321)
T 3lkz_A 155 YRP--SECCDTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLC 206 (321)
T ss_dssp SSC--CCCCSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESC
T ss_pred hCC--CCCCCEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcC
Confidence 765 367999998766 5545432 3677778999999 888886543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=4e-06 Score=78.35 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=78.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--C-C----CCCeEEEEcCCCCCC----CCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR--G-L----ADKVSFQVGDALQQP----FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~--~-~----~~~v~~~~~d~~~~~----~~~~~ 226 (380)
++.+||=||.|.|..+..+++....+|+.+|+++.+++.+++.+... + . .++++++.+|+...- -..++
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~ 284 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE 284 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence 46899999999999999998865678999999999999999875321 1 1 146899999986531 12468
Q ss_pred ccEEEeccccCCC-CC---------HHHHHHHHHHhcCCCcEEEEEe
Q 016921 227 FDLVWSMESGEHM-PD---------KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~-~~---------~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
||+|+....-... .+ ...+++.++++|+|||+++...
T Consensus 285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999975321111 11 1467889999999999988753
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0001 Score=68.44 Aligned_cols=150 Identities=15% Similarity=0.055 Sum_probs=102.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC--------------------CCCCeEEEEcCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG--------------------LADKVSFQVGDA 217 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~--------------------~~~~v~~~~~d~ 217 (380)
...|+.+|||.......+.... +..++-||. |+.++.-++.+.+.+ .+++..++.+|+
T Consensus 98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 5789999999999999998763 567778888 888888777776642 136789999999
Q ss_pred CCCC--------C-CCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016921 218 LQQP--------F-PDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (380)
Q Consensus 218 ~~~~--------~-~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (380)
.+.. . ..+...++++-.++.+++. ..++++.+.+.. |+|.+++.+...... + ...+...+...+..
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~~~-~-~~~fg~~m~~~l~~ 253 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ-P-NDRFGAIMQSNLKE 253 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS-T-TCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-CCcEEEEEeccCCCC-C-cchHHHHHHHHhhc
Confidence 8742 1 2356778888889999853 467888888876 788887777544311 1 12222222222322
Q ss_pred -Hhhc-cCCCCCCCHHHHHHHHHhCCCc
Q 016921 287 -ICDA-YYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 287 -~~~~-~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
.... .....+.++++..+.|.++||.
T Consensus 254 ~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 254 SRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred ccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 1111 1222356899999999999997
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.6e-05 Score=64.04 Aligned_cols=114 Identities=18% Similarity=0.205 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~ 218 (380)
.+..+.+...++ ++.+||||||++|.|+..++...+ ..|+|+|+-..-.+.- ......|+ +.+.|.++ |+.
T Consensus 66 KL~ei~ek~~l~-----~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gw-n~v~fk~gvDv~ 138 (267)
T 3p8z_A 66 KLQWFVERNMVI-----PEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGW-NIVKLMSGKDVF 138 (267)
T ss_dssp HHHHHHHTTSSC-----CCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTT-TSEEEECSCCGG
T ss_pred HHHHHHHhcCCC-----CCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCc-CceEEEecccee
Confidence 455566655554 488999999999999998888764 5799999976422100 00011233 46899999 976
Q ss_pred CCCCCCCCccEEEeccccCCCCCH-------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.++ ..++|.|+|.-+= --+++ -.+|+-+.+.|++ |.++|-.+.
T Consensus 139 ~~~--~~~~DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~ 188 (267)
T 3p8z_A 139 YLP--PEKCDTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLN 188 (267)
T ss_dssp GCC--CCCCSEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESC
T ss_pred ecC--CccccEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEcc
Confidence 654 3779999985433 22332 2366777889998 777775543
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.88 E-value=5.2e-05 Score=69.34 Aligned_cols=58 Identities=26% Similarity=0.239 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
.+++.++.... . ++..|||++||+|..+..+++. +.+++|+|+++.+++.|++++...
T Consensus 223 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGt~~~~a~~~-g~~~~g~e~~~~~~~~a~~r~~~~ 280 (297)
T 2zig_A 223 ELAERLVRMFS-F-----VGDVVLDPFAGTGTTLIAAARW-GRRALGVELVPRYAQLAKERFARE 280 (297)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEETTCTTTHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46677776654 2 3889999999999999998875 899999999999999999998764
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00023 Score=70.33 Aligned_cols=118 Identities=14% Similarity=0.162 Sum_probs=83.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGL 206 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~giD~s~~~~~~a~~~~~~~~~ 206 (380)
+++.+++.+.... +.+|+|-+||+|.+...+.+.. ...++|+|+++.+...|+.+..-.|.
T Consensus 205 Vv~lmv~l~~p~~-----~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~ 279 (530)
T 3ufb_A 205 VVRFMVEVMDPQL-----GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGL 279 (530)
T ss_dssp HHHHHHHHHCCCT-----TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCC-----CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCC
Confidence 4555555555443 7899999999999998776543 24699999999999999988777776
Q ss_pred CCCeEEEEcCCCCCCC----CCCCccEEEeccccCC---------C------CCH-HHHHHHHHHhcC-------CCcEE
Q 016921 207 ADKVSFQVGDALQQPF----PDGQFDLVWSMESGEH---------M------PDK-SKFVSELARVTA-------PAGTI 259 (380)
Q Consensus 207 ~~~v~~~~~d~~~~~~----~~~~fD~V~~~~~l~~---------~------~~~-~~~l~~~~r~Lk-------pgG~l 259 (380)
. ...+..+|....+. +..+||+|+++=-+.- + .+. ..+++.+.+.|| |||++
T Consensus 280 ~-~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~ 358 (530)
T 3ufb_A 280 E-YPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRA 358 (530)
T ss_dssp S-CCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEE
T ss_pred c-cccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceE
Confidence 3 45677888765442 2357999998633311 1 111 246788888887 69998
Q ss_pred EEEec
Q 016921 260 IIVTW 264 (380)
Q Consensus 260 ~~~~~ 264 (380)
.+...
T Consensus 359 avVlP 363 (530)
T 3ufb_A 359 AVVVP 363 (530)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 88764
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=3.5e-05 Score=67.48 Aligned_cols=110 Identities=19% Similarity=0.218 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHH--HHHHHHHHHHHcCCCCCe---EEEE
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPV--QAQRANALAAARGLADKV---SFQV 214 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~--~~~~a~~~~~~~~~~~~v---~~~~ 214 (380)
.+.++.++.-++ ++.+|||+||+.|.|+..+++..+ ..|.|.++... .... ...+.++ .|.+
T Consensus 61 KL~EIdeK~lik-----pg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~-------~~~~~Gv~~i~~~~ 128 (269)
T 2px2_A 61 KLRWLVERRFVQ-----PIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPM-------LMQSYGWNIVTMKS 128 (269)
T ss_dssp HHHHHHHTTSCC-----CCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCC-------CCCSTTGGGEEEEC
T ss_pred HHHHHHHcCCCC-----CCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCC-------cccCCCceEEEeec
Confidence 444455443333 599999999999999999998621 13344443322 1000 0011233 4555
Q ss_pred c-CCCCCCCCCCCccEEEeccccCCCCCH----H---HHHHHHHHhcCCCc-EEEEEecc
Q 016921 215 G-DALQQPFPDGQFDLVWSMESGEHMPDK----S---KFVSELARVTAPAG-TIIIVTWC 265 (380)
Q Consensus 215 ~-d~~~~~~~~~~fD~V~~~~~l~~~~~~----~---~~l~~~~r~LkpgG-~l~~~~~~ 265 (380)
+ |+.+++ ..++|+|+|..+-. -..+ . .++.-+.++|+||| .+++=.|.
T Consensus 129 G~Df~~~~--~~~~DvVLSDMAPn-SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFq 185 (269)
T 2px2_A 129 GVDVFYKP--SEISDTLLCDIGES-SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILC 185 (269)
T ss_dssp SCCGGGSC--CCCCSEEEECCCCC-CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cCCccCCC--CCCCCEEEeCCCCC-CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECC
Confidence 7 988753 56899999865443 3222 1 25677779999999 88886653
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=2.9e-06 Score=97.67 Aligned_cols=146 Identities=16% Similarity=0.104 Sum_probs=72.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFG------AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~------~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V 230 (380)
+..+|||||.|+|..+..+.+.++ .+++..|+|+...+.++++++.. .++....|..+. ++...+||+|
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~----di~~~~~d~~~~~~~~~~~ydlv 1315 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL----HVTQGQWDPANPAPGSLGKADLL 1315 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH----TEEEECCCSSCCCC-----CCEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc----ccccccccccccccCCCCceeEE
Confidence 467999999999988777666542 37899999998888888776542 243333344332 3345679999
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCC
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLS 310 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aG 310 (380)
++..++|..++....+++++++|||||++++.+....... .....+ +... .. ....+.+.++|.++|+++|
T Consensus 1316 ia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~---g~~~~~----~~~~-~r-~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1316 VCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPL---GEMVGF----LTSP-EQ-GGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp EEECC--------------------CCEEEEEEC-----------------------------------CTTTTSSTTTT
T ss_pred EEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccc---cccccc----cccc-cc-cCCcccCHHHHHHHHHhCC
Confidence 9999998888889999999999999999999874321000 000000 0000 00 0012356678888899999
Q ss_pred CcEEEE
Q 016921 311 LEDIKA 316 (380)
Q Consensus 311 f~~v~~ 316 (380)
|..+..
T Consensus 1387 f~~~~~ 1392 (2512)
T 2vz8_A 1387 LHLVAL 1392 (2512)
T ss_dssp EEEEEE
T ss_pred Cceeee
Confidence 988765
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00074 Score=61.88 Aligned_cols=147 Identities=15% Similarity=0.057 Sum_probs=96.4
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC--CCCCeEEEEcCCCCCC---------CCCCCcc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG--LADKVSFQVGDALQQP---------FPDGQFD 228 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~--~~~~v~~~~~d~~~~~---------~~~~~fD 228 (380)
..||+||||-=..+..+....+..|+-+| .|..++..++.+.+.+ ...+..++.+|+.+ . +..+..=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 46999999987776666521157899999 5999999999887643 24578899999986 2 2223445
Q ss_pred EEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccc-hHHHHHHHHHhhcc---------CCCCC
Q 016921 229 LVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQ-PWEQELLKKICDAY---------YLPAW 296 (380)
Q Consensus 229 ~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~ 296 (380)
++++-++++|+++ ...+++.+...+.||+.|++....... ... ......+....... .+...
T Consensus 182 ~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~gs~l~~d~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~ 255 (310)
T 2uyo_A 182 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVETSPLHG------DEWREQMQLRFRRVSDALGFEQAVDVQELIYH 255 (310)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEECCCTTC------SHHHHHHHHHHHHHHC-----------CCTTC
T ss_pred EEEEechHhhCCHHHHHHHHHHHHHhCCCCeEEEEEecCCCC------cchhHHHHHHHHHHHHHcCCcCCCCccccccC
Confidence 6777788888864 467888999988899988886543211 111 01111120111111 11112
Q ss_pred CC-HHHHHHHHHhCCCcEE
Q 016921 297 CS-TADYVKLLQSLSLEDI 314 (380)
Q Consensus 297 ~~-~~~~~~ll~~aGf~~v 314 (380)
.+ .++..++|.+.||+.+
T Consensus 256 ~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 256 DENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CTTCCCHHHHHTTTTEEEE
T ss_pred CCChHHHHHHHHHCcCccc
Confidence 35 7899999999999987
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.50 E-value=9.4e-05 Score=67.74 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=68.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++++++.+.+++ +..++|..||.|..+..+++.. ..+|+|+|.++.+++.++ ++ ...++.++++++.
T Consensus 45 Ll~Evl~~L~i~p-----ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL----~~~Rv~lv~~nF~ 114 (347)
T 3tka_A 45 LLDEAVNGLNIRP-----DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI----DDPRFSIIHGPFS 114 (347)
T ss_dssp TTHHHHHHTCCCT-----TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC----CCTTEEEEESCGG
T ss_pred cHHHHHHhhCCCC-----CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh----cCCcEEEEeCCHH
Confidence 5677788877654 8999999999999999999876 479999999999999884 33 1368999999988
Q ss_pred CCC-----CC-CCCccEEEeccccC
Q 016921 219 QQP-----FP-DGQFDLVWSMESGE 237 (380)
Q Consensus 219 ~~~-----~~-~~~fD~V~~~~~l~ 237 (380)
++. .. .+++|.|+....+.
T Consensus 115 ~l~~~L~~~g~~~~vDgILfDLGVS 139 (347)
T 3tka_A 115 ALGEYVAERDLIGKIDGILLDLGVS 139 (347)
T ss_dssp GHHHHHHHTTCTTCEEEEEEECSCC
T ss_pred HHHHHHHhcCCCCcccEEEECCccC
Confidence 752 11 13699999865553
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00081 Score=61.01 Aligned_cols=127 Identities=15% Similarity=0.131 Sum_probs=78.6
Q ss_pred CCEEEEECCCcChHHHHHHHH---c--CC--EEEEEeCCH--------H-HHHHHHHHHHHcC--CCCC--eEEEEcCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK---F--GA--KCQGITLSP--------V-QAQRANALAAARG--LADK--VSFQVGDAL 218 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~--~~--~v~giD~s~--------~-~~~~a~~~~~~~~--~~~~--v~~~~~d~~ 218 (380)
.-+|||+|-|||.+.....+. . .. +++.+|..+ . ..+..+....... ...+ +.+..+|+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 568999999999976554332 1 23 456666421 1 1122222222210 0123 467788876
Q ss_pred CC-C-CCCCCccEEEeccccCCCCCH----HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccC
Q 016921 219 QQ-P-FPDGQFDLVWSMESGEHMPDK----SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYY 292 (380)
Q Consensus 219 ~~-~-~~~~~fD~V~~~~~l~~~~~~----~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (380)
+. + +++..||+|+... +.--.+| ..+++.++++++|||.|.- ++
T Consensus 177 ~~l~~l~~~~~Da~flDg-FsP~kNPeLWs~e~f~~l~~~~~pgg~laT--Yt--------------------------- 226 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDA-FSPYKNPELWTLDFLSLIKERIDEKGYWVS--YS--------------------------- 226 (308)
T ss_dssp HHGGGCCSCCEEEEEECC-SCTTTSGGGGSHHHHHHHHTTEEEEEEEEE--SC---------------------------
T ss_pred HHHhhhcccceeEEEeCC-CCcccCcccCCHHHHHHHHHHhCCCcEEEE--Ee---------------------------
Confidence 52 2 4456899998754 3222233 6899999999999998764 21
Q ss_pred CCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 293 LPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 293 ~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
....++..|+++||++.....+.
T Consensus 227 -----aag~VRR~L~~aGF~V~k~~G~g 249 (308)
T 3vyw_A 227 -----SSLSVRKSLLTLGFKVGSSREIG 249 (308)
T ss_dssp -----CCHHHHHHHHHTTCEEEEEECC-
T ss_pred -----CcHHHHHHHHHCCCEEEecCCCC
Confidence 23567889999999998887654
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.001 Score=61.98 Aligned_cols=77 Identities=12% Similarity=0.086 Sum_probs=59.6
Q ss_pred HHHHHHHHHcCCCCC-CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 140 RMIEETLRFAGVSED-PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~-~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
.+++++++.+++... ...++..|||||.|.|.++..|++.. ..+|+++++++..+...++.. . .++++++.+|+
T Consensus 39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~---~~~l~ii~~D~ 114 (353)
T 1i4w_A 39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E---GSPLQILKRDP 114 (353)
T ss_dssp HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T---TSSCEEECSCT
T ss_pred HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c---CCCEEEEECCc
Confidence 466777777765420 00136899999999999999999864 568999999999998888766 2 25899999999
Q ss_pred CCC
Q 016921 218 LQQ 220 (380)
Q Consensus 218 ~~~ 220 (380)
.++
T Consensus 115 l~~ 117 (353)
T 1i4w_A 115 YDW 117 (353)
T ss_dssp TCH
T ss_pred cch
Confidence 654
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00082 Score=60.03 Aligned_cols=59 Identities=20% Similarity=0.223 Sum_probs=48.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~ 205 (380)
.+++.++.... . ++..|||..||+|..+....+. +.+++|+|+++.+++.+++++...+
T Consensus 200 ~l~~~~i~~~~-~-----~~~~vlD~f~GsGtt~~~a~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 258 (260)
T 1g60_A 200 DLIERIIRASS-N-----PNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLNQLE 258 (260)
T ss_dssp HHHHHHHHHHC-C-----TTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhC-C-----CCCEEEECCCCCCHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHHhcc
Confidence 46666666653 2 4889999999999999988775 8999999999999999999986543
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.18 E-value=0.027 Score=51.97 Aligned_cols=154 Identities=13% Similarity=0.020 Sum_probs=96.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcC----------------------CCCCeEEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARG----------------------LADKVSFQV 214 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~----------------------~~~~v~~~~ 214 (380)
...|+-+|||.=.....+.... +..++=||. |+.++.=++.+...+ .+.+..++.
T Consensus 91 ~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~ 169 (334)
T 3iei_A 91 HCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIG 169 (334)
T ss_dssp CSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEE
T ss_pred CCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEc
Confidence 5689999999988888887642 567788887 555554444443210 146788999
Q ss_pred cCCCCC----------CCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH
Q 016921 215 GDALQQ----------PFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE 282 (380)
Q Consensus 215 ~d~~~~----------~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (380)
+|+.+. .+..+..=++++-+++.+++. ..++++.+.+.. |+|.+++.+...+. ..+...+..
T Consensus 170 ~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~-----d~fg~~M~~ 243 (334)
T 3iei_A 170 ADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSF-ERAMFINYEQVNMG-----DRFGQIMIE 243 (334)
T ss_dssp CCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCTT-----SHHHHHHHH
T ss_pred cccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhC-CCceEEEEeccCCC-----CHHHHHHHH
Confidence 998773 133445567777788888853 467888888766 56666666754221 122222222
Q ss_pred HHHHHhhc-cCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 283 LLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 283 ~~~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
.+...... ..+..+.++++..+.+.++||+.++..+.
T Consensus 244 ~l~~~g~pl~sl~~y~t~~~~~~r~~~~Gw~~~~~~d~ 281 (334)
T 3iei_A 244 NLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDM 281 (334)
T ss_dssp HHHTTTCCCTTGGGGGCHHHHHHHHHTTTCSEEEEEEH
T ss_pred HHHHhCCCCcccccCCCHHHHHHHHHHcCCCcceeecH
Confidence 22221111 11113467899999999999998876543
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0019 Score=57.55 Aligned_cols=92 Identities=17% Similarity=0.183 Sum_probs=61.4
Q ss_pred CCCCEEEEECC------CcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCcc
Q 016921 157 KRPKNVVDVGC------GIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGc------GtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD 228 (380)
+.+.+|||+|+ -.|.+ .+.+.. ++.|+++|+.+-.. . .. .++++|...... .++||
T Consensus 108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~s-----------d-a~-~~IqGD~~~~~~-~~k~D 171 (344)
T 3r24_A 108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVS-----------D-AD-STLIGDCATVHT-ANKWD 171 (344)
T ss_dssp CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBC-----------S-SS-EEEESCGGGEEE-SSCEE
T ss_pred cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCccccc-----------C-CC-eEEEcccccccc-CCCCC
Confidence 44899999997 45553 222222 46999999987321 1 12 559999766432 48899
Q ss_pred EEEecccc---CCC--CC------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESG---EHM--PD------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l---~~~--~~------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|++-.+- .+. .. .+.++.-+.++|+|||.|++=.|
T Consensus 172 LVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF 218 (344)
T 3r24_A 172 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT 218 (344)
T ss_dssp EEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence 99984322 121 11 25677778899999999999765
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.013 Score=55.54 Aligned_cols=98 Identities=16% Similarity=0.035 Sum_probs=66.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C------CCCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~------~~~~~fD 228 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++ .| ..++..+-.+. . .....+|
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lG----a~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----AG----FETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----TT----CEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cC----CcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 489999999986 8888888887788 99999999998887753 23 23332221111 0 0123699
Q ss_pred EEEeccccCCC--------CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHM--------PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~--------~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-.-.-... .++...++.+.+.|++||++++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 99865432210 012357889999999999988754
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.40 E-value=0.023 Score=53.82 Aligned_cols=99 Identities=21% Similarity=0.158 Sum_probs=68.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC------CCCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~------~~~~~fD 228 (380)
++.+||-+|+|. |..+..+++..|+ .|+++|.+++.++.+++ .|. ..+...-.+ +. .....+|
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----lGa----~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----QGF----EIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC----EEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----cCC----cEEccCCcchHHHHHHHHhCCCCCC
Confidence 489999999875 8888889988787 79999999998888764 332 223221111 00 1124699
Q ss_pred EEEeccccC---------CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGE---------HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~---------~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-.-... |.+++...++.+.+.|++||++++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~ 301 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 301 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence 998654321 233455688999999999999987643
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.20 E-value=0.024 Score=53.02 Aligned_cols=94 Identities=18% Similarity=0.209 Sum_probs=65.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||-+|+|. |..+..+++..|+ .|+++|.++..++.+++. |. -.++..+-.++ ....+.+|+|
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~~~~~gg~D~v 262 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDGGVNFA 262 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc----CC---CEEecCCccCHHHHHHHhcCCCCcEE
Confidence 489999999985 8888888887787 799999999988887653 32 12222211111 0112379998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... ....++.+.+.|++||++++...
T Consensus 263 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 263 LESTG------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp EECSC------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EECCC------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 75432 13568899999999999988653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.023 Score=47.90 Aligned_cols=90 Identities=18% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||.+|+ |.|..+..++...|++|+++|.+++.++.+++ .+. .. .. |..+.. .....+
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~-~~--d~~~~~~~~~~~~~~~~~~~ 108 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV--EY-VG--DSRSVDFADEILELTDGYGV 108 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC--SE-EE--ETTCSTHHHHHHHHTTTCCE
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----cCC--CE-Ee--eCCcHHHHHHHHHHhCCCCC
Confidence 4899999994 45666666666558999999999987766543 232 11 12 332211 122469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+.... ...++.+.+.|++||++++..
T Consensus 109 D~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 109 DVVLNSLA-------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred eEEEECCc-------hHHHHHHHHHhccCCEEEEEc
Confidence 99986432 246889999999999988864
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.05 Score=50.40 Aligned_cols=90 Identities=20% Similarity=0.212 Sum_probs=64.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++ .|. . .++ .+...+ . +.+|+|+-...-
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa--~-~v~-~~~~~~--~-~~~D~vid~~g~ 244 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALS----MGV--K-HFY-TDPKQC--K-EELDFIISTIPT 244 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHH----TTC--S-EEE-SSGGGC--C-SCEEEEEECCCS
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHh----cCC--C-eec-CCHHHH--h-cCCCEEEECCCc
Confidence 489999999985 888888888779999999999988887764 332 1 222 333322 2 279998854332
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ..++.+.+.|++||++++...
T Consensus 245 ~------~~~~~~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 245 H------YDLKDYLKLLTYNGDLALVGL 266 (348)
T ss_dssp C------CCHHHHHTTEEEEEEEEECCC
T ss_pred H------HHHHHHHHHHhcCCEEEEECC
Confidence 1 247788899999999998753
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0054 Score=54.85 Aligned_cols=101 Identities=12% Similarity=-0.000 Sum_probs=75.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C---CCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q---PFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~---~~~~~~fD~V~~~~ 234 (380)
+..+||+=+|+|.+++.+... +.+++.+|.++...+..++++.. ..+++++..|... + .-+..+||+|++.=
T Consensus 92 ~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~---~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 92 LNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF---NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp SSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT---TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc---CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 566999999999999999885 68999999999999888877643 3579999999654 1 12345799999864
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
-.+.-.+..++++.+.+ .+.|+|.+++=-
T Consensus 168 PYe~k~~~~~vl~~L~~~~~r~~~Gi~v~WY 198 (283)
T 2oo3_A 168 SYERKEEYKEIPYAIKNAYSKFSTGLYCVWY 198 (283)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred CCCCCcHHHHHHHHHHHhCccCCCeEEEEEE
Confidence 44433456677766665 456899888843
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.03 Score=57.02 Aligned_cols=126 Identities=21% Similarity=0.230 Sum_probs=81.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-------------CCEEEEEeC---CHHHHHHHH-----------HHHHHcCC-----
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-------------GAKCQGITL---SPVQAQRAN-----------ALAAARGL----- 206 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-------------~~~v~giD~---s~~~~~~a~-----------~~~~~~~~----- 206 (380)
.-+|+|+|.|+|.+.+.+.+.+ ..+++.++. +.+.+..+- +.......
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 138 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGC 138 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEE
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCc
Confidence 5799999999999888876643 146899998 555555432 22222110
Q ss_pred -----C---CCeEEEEcCCCCC-C-CC---CCCccEEEeccccCCC-CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 016921 207 -----A---DKVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHM-PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (380)
Q Consensus 207 -----~---~~v~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~~-~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~ 270 (380)
. -.+.+..+|+.+. + +. +..+|+++....--.. ++ ...++..+.++++|||.+.-..
T Consensus 139 ~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 211 (689)
T 3pvc_A 139 HRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------- 211 (689)
T ss_dssp EEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 0 1356677777542 2 22 4689999875422221 22 1689999999999999865421
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....+++.|+++||.+.....
T Consensus 212 ---------------------------~~~~vr~~l~~aGf~~~~~~~ 232 (689)
T 3pvc_A 212 ---------------------------AAGFVRRGLQQAGFNVTKVKG 232 (689)
T ss_dssp ---------------------------CCHHHHHHHHHTTCEEEEEEC
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEeccC
Confidence 124677889999999877653
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.064 Score=47.38 Aligned_cols=105 Identities=10% Similarity=0.079 Sum_probs=71.8
Q ss_pred CCEEEEECCCcChHHHHHHHH--------cCCEEEEEe-----CCHH-------------------HHHHHHHHH-----
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK--------FGAKCQGIT-----LSPV-------------------QAQRANALA----- 201 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~--------~~~~v~giD-----~s~~-------------------~~~~a~~~~----- 201 (380)
+..|+|+|+-.|..+..++.. ...+|+|+| +.+. ..+..++.+
T Consensus 70 pG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~ 149 (257)
T 3tos_A 70 PGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHEC 149 (257)
T ss_dssp CSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHT
T ss_pred CCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhh
Confidence 678999999999988887652 146899999 3210 011112211
Q ss_pred -HHcCC-CCCeEEEEcCCCCC-C-----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 202 -AARGL-ADKVSFQVGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 202 -~~~~~-~~~v~~~~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
...+. .+++.++.+++.+. | .+..+||+|++-.-. .......++.+...|+|||.+++-++.
T Consensus 150 ~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y~~t~~~le~~~p~l~~GGvIv~DD~~ 219 (257)
T 3tos_A 150 SDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--YEPTKAVLEAIRPYLTKGSIVAFDELD 219 (257)
T ss_dssp TSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--HHHHHHHHHHHGGGEEEEEEEEESSTT
T ss_pred hhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--cchHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 12344 47899999998763 2 345679999987632 233456789999999999999997754
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.13 Score=47.59 Aligned_cols=94 Identities=21% Similarity=0.221 Sum_probs=64.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCC------CC---CCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQP------FP---DGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~------~~---~~~ 226 (380)
++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++ .|.. .++..+- .+.. .. ...
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~~~~~~~~~~~~~i~~~~~~~~g~g 240 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKN----CGAD---VTLVVDPAKEEESSIIERIRSAIGDL 240 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTCS---EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH----hCCC---EEEcCcccccHHHHHHHHhccccCCC
Confidence 489999999874 778888888778899999999998887764 3421 2222110 1110 11 246
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+|+-... . ...++.+.+.|++||++++...
T Consensus 241 ~D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 241 PNVTIDCSG-----N-EKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CSEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CCEEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 999875432 1 3467889999999999988643
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.11 Score=48.46 Aligned_cols=94 Identities=21% Similarity=0.211 Sum_probs=65.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C---CCCCCc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P---FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~---~~~~~f 227 (380)
++.+||=+|+|. |..+..+++..|+ .|+++|.++..++.+++. |.. .++...-.++ . ...+.+
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga~---~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV----GAT---ATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TCS---EEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CCC---EEECCCCcCHHHHHHhhhhccCCCC
Confidence 389999999874 7888888887787 999999999988877652 321 1221111110 0 223479
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-... ....++.+.+.|++||++++...
T Consensus 255 Dvvid~~G------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 255 DVVIECAG------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEEEECSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CEEEECCC------CHHHHHHHHHHhccCCEEEEEec
Confidence 99885422 13578899999999999988653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.04 Score=50.83 Aligned_cols=92 Identities=18% Similarity=0.120 Sum_probs=65.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC------CCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF------PDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------~~~~fD~V 230 (380)
++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++ .|. -.++ |..+..+ ..+.+|.|
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~~i--~~~~~~~~~~~~~~~g~~d~v 236 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARR----LGA---EVAV--NARDTDPAAWLQKEIGGAHGV 236 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC---SEEE--ETTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHH----cCC---CEEE--eCCCcCHHHHHHHhCCCCCEE
Confidence 489999999984 888899998889999999999998887765 332 1222 2222110 01368888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... ....++.+.+.|++||++++...
T Consensus 237 id~~g------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 237 LVTAV------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp EESSC------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEeCC------CHHHHHHHHHHhccCCEEEEeCC
Confidence 75422 24578899999999999988653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.043 Score=55.80 Aligned_cols=126 Identities=19% Similarity=0.182 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----------C--CEEEEEeC---CHHHHHHHHH-----------HHHHcCC--C--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----------G--AKCQGITL---SPVQAQRANA-----------LAAARGL--A-- 207 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----------~--~~v~giD~---s~~~~~~a~~-----------~~~~~~~--~-- 207 (380)
.-+|||+|.|+|.+.+...+.+ . .++++++. +.+.+..+-+ ....... +
T Consensus 67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 146 (676)
T 3ps9_A 67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC 146 (676)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence 5699999999999887776543 1 36899998 7777763322 2222211 0
Q ss_pred ---------CCeEEEEcCCCCC-C-CC---CCCccEEEeccccCCC-CC--HHHHHHHHHHhcCCCcEEEEEeccCCCCC
Q 016921 208 ---------DKVSFQVGDALQQ-P-FP---DGQFDLVWSMESGEHM-PD--KSKFVSELARVTAPAGTIIIVTWCHRDLA 270 (380)
Q Consensus 208 ---------~~v~~~~~d~~~~-~-~~---~~~fD~V~~~~~l~~~-~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~ 270 (380)
-.+.+..+|+.+. + +. ...||+|+....-... ++ ...+++.++++++|||.+....
T Consensus 147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------- 219 (676)
T 3ps9_A 147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNAMARLARPGGTLATFT------- 219 (676)
T ss_dssp EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGGCGGGSCHHHHHHHHHHEEEEEEEEESC-------
T ss_pred eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcCChhhhhHHHHHHHHHHhCCCCEEEecc-------
Confidence 1234566666542 1 11 4679999875422111 22 1689999999999999866422
Q ss_pred CCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEe
Q 016921 271 PSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~ 318 (380)
....++..|+++||.+.....
T Consensus 220 ---------------------------~~~~vr~~L~~aGf~v~~~~~ 240 (676)
T 3ps9_A 220 ---------------------------SAGFVRRGLQDAGFTMQKRKG 240 (676)
T ss_dssp ---------------------------CCHHHHHHHHHHTCEEEEEEC
T ss_pred ---------------------------CcHHHHHHHHhCCeEEEeccc
Confidence 124677888999998776553
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.11 Score=48.39 Aligned_cols=96 Identities=14% Similarity=0.096 Sum_probs=66.2
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC--CC------CCCCCCc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDAL--QQ------PFPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~--~~------~~~~~~f 227 (380)
++.+||=+|+|. |..+..+++..|++ |+++|.+++.++.+++. .. .-+.+...+.. ++ ......+
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~----~~~~~~~~~~~~~~~~~~v~~~t~g~g~ 253 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP----EVVTHKVERLSAEESAKKIVESFGGIEP 253 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT----TCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch----hcccccccccchHHHHHHHHHHhCCCCC
Confidence 388999999874 88888888877886 99999999999988875 21 11222211110 10 0123579
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.-. ....++.+.+.|++||++++...
T Consensus 254 Dvvid~~g------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 254 AVALECTG------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp SEEEECSC------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred CEEEECCC------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 99885432 13468889999999999998754
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.14 Score=47.43 Aligned_cols=94 Identities=17% Similarity=0.137 Sum_probs=64.3
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCC-----CCCCCCc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQ-----PFPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~-----~~~~~~f 227 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.++..++.+++ .|.. .++..+ ..+. ....+.+
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~~i~~~~~~g~ 243 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----IGAD---LVLQISKESPQEIARKVEGQLGCKP 243 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTCS---EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----hCCC---EEEcCcccccchHHHHHHHHhCCCC
Confidence 489999999884 8888888887788 99999999988887764 3321 222211 0010 0001469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.-. . ...++.+.+.|++||++++...
T Consensus 244 D~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 244 EVTIECTG-----A-EASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp SEEEECSC-----C-HHHHHHHHHHSCTTCEEEECSC
T ss_pred CEEEECCC-----C-hHHHHHHHHHhcCCCEEEEEec
Confidence 99875432 1 3467889999999999988653
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.069 Score=49.49 Aligned_cols=94 Identities=16% Similarity=0.061 Sum_probs=64.6
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----C-CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----P-FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~-~~~~~fD~ 229 (380)
++.+||=+|+|. |..+..+++..|+ +|+++|.+++.++.+++. |. ..++..+-.++ . .....+|+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~v~~~t~g~g~D~ 238 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY----GA---TDIINYKNGDIVEQILKATDGKGVDK 238 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH----TC---CEEECGGGSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh----CC---ceEEcCCCcCHHHHHHHHcCCCCCCE
Confidence 489999999884 7788888887787 899999999888877653 32 12222111111 0 12346999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-...- ...++.+.+.|+|||++++...
T Consensus 239 v~d~~g~------~~~~~~~~~~l~~~G~~v~~G~ 267 (352)
T 3fpc_A 239 VVIAGGD------VHTFAQAVKMIKPGSDIGNVNY 267 (352)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEECCCC------hHHHHHHHHHHhcCCEEEEecc
Confidence 9854321 2468889999999999988654
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.02 E-value=0.072 Score=50.63 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCCEEEEECCCcChHHHHHH-HHcC--CEEEEEeCCHHHHHHHHHHHHH--cCCC-CCeEEEEcCCCC
Q 016921 157 KRPKNVVDVGCGIGGSSRYLA-KKFG--AKCQGITLSPVQAQRANALAAA--RGLA-DKVSFQVGDALQ 219 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~-~~~~--~~v~giD~s~~~~~~a~~~~~~--~~~~-~~v~~~~~d~~~ 219 (380)
.++..|+|||++.|.++..++ ...+ .+|+++|++|...+..+++.+. ++.. +++.++..-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 468999999999999999988 4433 6999999999999999999887 2222 577777655543
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.99 E-value=0.058 Score=50.31 Aligned_cols=94 Identities=22% Similarity=0.123 Sum_probs=65.6
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
.++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++. |. -.++..+..++. .....+|+
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~v~~~~~g~g~D~ 260 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFAL----GA---DHGINRLEEDWVERVYALTGDRGADH 260 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHc----CC---CEEEcCCcccHHHHHHHHhCCCCceE
Confidence 3589999999884 7788888887799999999999988887652 32 122222211110 12347999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-...- ..++.+.+.|++||++++...
T Consensus 261 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 261 ILEIAGG-------AGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEEETTS-------SCHHHHHHHEEEEEEEEEECC
T ss_pred EEECCCh-------HHHHHHHHHhhcCCEEEEEec
Confidence 8865431 346788899999999998764
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.95 E-value=0.097 Score=48.02 Aligned_cols=90 Identities=16% Similarity=0.151 Sum_probs=61.8
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CC-------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QP-------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~-------~~~~~f 227 (380)
++.+||-.|+ |.|..+..++...|++|+++|.+++.++.+++ .|. .. . .|..+ .. ...+.+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~----~g~--~~-~--~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF--DA-A--FNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--SE-E--EETTSCSCHHHHHHHHCTTCE
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--cE-E--EecCCHHHHHHHHHHHhCCCC
Confidence 4899999997 46777777777668999999999988877633 232 11 1 23322 11 112479
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+.... ...++.+.+.|++||++++..
T Consensus 216 d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVG-------GEFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSC-------HHHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCC-------hHHHHHHHHHHhcCCEEEEEe
Confidence 99886543 135788999999999998764
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.11 Score=47.62 Aligned_cols=97 Identities=14% Similarity=0.113 Sum_probs=65.6
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG---AKC-QGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---~~v-~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~ 231 (380)
..+++|+-||.|.+...+.+. | ..+ .++|+++...+..+.+.. .. ++.+|+.++. ++...+|+++
T Consensus 10 ~~~vidLFaG~GG~~~G~~~a-G~~~~~v~~a~e~d~~a~~ty~~N~~------~~-~~~~DI~~~~~~~i~~~~~Dil~ 81 (327)
T 3qv2_A 10 QVNVIEFFSGIGGLRSSYERS-SININATFIPFDINEIANKIYSKNFK------EE-VQVKNLDSISIKQIESLNCNTWF 81 (327)
T ss_dssp CEEEEEETCTTTHHHHHHHHS-SCCCCEEEEEECCCHHHHHHHHHHHC------CC-CBCCCTTTCCHHHHHHTCCCEEE
T ss_pred CCEEEEECCChhHHHHHHHHc-CCCceEEEEEEECCHHHHHHHHHHCC------CC-cccCChhhcCHHHhccCCCCEEE
Confidence 578999999999999998876 4 346 699999999888877762 12 5678888764 2223689998
Q ss_pred eccccCCC-----------CCH-HHHHHHHHH-hcCC---CcEEEEEe
Q 016921 232 SMESGEHM-----------PDK-SKFVSELAR-VTAP---AGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~-----------~~~-~~~l~~~~r-~Lkp---gG~l~~~~ 263 (380)
...-...+ .|. ..++.++.+ +++. .-.+++.|
T Consensus 82 ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lE 129 (327)
T 3qv2_A 82 MSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIE 129 (327)
T ss_dssp ECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEE
T ss_pred ecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEE
Confidence 65433332 232 356667777 5542 23456666
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.07 Score=50.07 Aligned_cols=69 Identities=17% Similarity=0.108 Sum_probs=54.0
Q ss_pred CEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---C-----CCCCccEE
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---F-----PDGQFDLV 230 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~-----~~~~fD~V 230 (380)
.+|||+-||.|.++..+.+. |.+ +.++|+++...+..+.+. ++..++.+|+.++. + ....+|+|
T Consensus 3 ~~vidLFsG~GGlslG~~~a-G~~~v~avE~d~~a~~t~~~N~------~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i 75 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARA-GFDVKMAVEIDQHAINTHAINF------PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGI 75 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHH-TCEEEEEECSCHHHHHHHHHHC------TTSEEECCCGGGCCHHHHHHHHCSCCCCCEE
T ss_pred CeEEEEccCcCHHHHHHHHC-CCcEEEEEeCCHHHHHHHHHhC------CCCceEecChhhcCHHHHHhhcccCCCeeEE
Confidence 58999999999999999887 655 669999999888777654 35678889988763 1 24679999
Q ss_pred Eeccc
Q 016921 231 WSMES 235 (380)
Q Consensus 231 ~~~~~ 235 (380)
+..--
T Consensus 76 ~ggpP 80 (376)
T 3g7u_A 76 IGGPP 80 (376)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 97543
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.77 E-value=0.06 Score=50.36 Aligned_cols=92 Identities=22% Similarity=0.240 Sum_probs=62.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~V~~~~ 234 (380)
++.+||-+|+|. |..+..+++..|++|+++|.+++.++.+++ .|. ..++..+-.+ . ... +.+|+|+-..
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~----lGa---~~vi~~~~~~~~~~~~-~g~Dvvid~~ 265 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKA----LGA---DEVVNSRNADEMAAHL-KSFDFILNTV 265 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH----HTC---SEEEETTCHHHHHTTT-TCEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---cEEeccccHHHHHHhh-cCCCEEEECC
Confidence 489999999984 778888888779999999999988887765 232 1222211101 0 111 5799988543
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
... ..++.+.+.|++||++++..
T Consensus 266 g~~------~~~~~~~~~l~~~G~iv~~G 288 (369)
T 1uuf_A 266 AAP------HNLDDFTTLLKRDGTMTLVG 288 (369)
T ss_dssp SSC------CCHHHHHTTEEEEEEEEECC
T ss_pred CCH------HHHHHHHHHhccCCEEEEec
Confidence 321 23677889999999988764
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.048 Score=50.09 Aligned_cols=58 Identities=14% Similarity=0.090 Sum_probs=46.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG 205 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~ 205 (380)
+++.++.... .++..|||.-||+|..+....+. +.+++|+|+++...+.+++++...+
T Consensus 241 l~~~~i~~~~------~~~~~VlDpF~GsGtt~~aa~~~-gr~~ig~e~~~~~~~~~~~r~~~~~ 298 (323)
T 1boo_A 241 LPEFFIRMLT------EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLDNN 298 (323)
T ss_dssp HHHHHHHHHC------CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSCSC
T ss_pred HHHHHHHHhC------CCCCEEEECCCCCCHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHhcc
Confidence 5666665543 24899999999999999887765 9999999999999999998875443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.08 Score=48.65 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=63.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||-+|+ |.|..+..+++..|++|+++|.+++.++.+.+. .|. ..++...-.+. ....+.+|+|
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~---~g~---~~~~~~~~~~~~~~~~~~~~~~~d~v 222 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEE---LGF---DGAIDYKNEDLAAGLKRECPKGIDVF 222 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---TCC---SEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC---CEEEECCCHHHHHHHHHhcCCCceEE
Confidence 4899999998 467788888887799999999999887776321 232 11222111111 0113579988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.... ...++.+.+.|++||++++...
T Consensus 223 i~~~g-------~~~~~~~~~~l~~~G~iv~~G~ 249 (336)
T 4b7c_A 223 FDNVG-------GEILDTVLTRIAFKARIVLCGA 249 (336)
T ss_dssp EESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred EECCC-------cchHHHHHHHHhhCCEEEEEee
Confidence 76432 1478899999999999988653
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=94.61 E-value=0.064 Score=49.15 Aligned_cols=59 Identities=20% Similarity=0.248 Sum_probs=46.3
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARG 205 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~---~~~~~a~~~~~~~~ 205 (380)
.+++.++.... .++..|||.-||+|..+....+. +.+.+|+|+++ ...+.+++++...+
T Consensus 230 ~l~~~~i~~~~------~~~~~vlDpF~GsGtt~~aa~~~-~r~~ig~e~~~~~~~~~~~~~~Rl~~~~ 291 (319)
T 1eg2_A 230 AVIERLVRALS------HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFLQDDG 291 (319)
T ss_dssp HHHHHHHHHHS------CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHhC------CCCCEEEecCCCCCHHHHHHHHc-CCcEEEEECCccHHHHHHHHHHHHHHcc
Confidence 46666666553 24899999999999999988876 89999999999 99999998876543
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.73 Score=36.20 Aligned_cols=90 Identities=18% Similarity=0.104 Sum_probs=58.0
Q ss_pred CCEEEEECCCcChHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKK---FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
..+|+=+|+|. ++..+++. .|..|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 7 ~~~viIiG~G~--~G~~la~~L~~~g~~v~vid~~~~~~~~~~~--------~g~~~i~gd~~~~~~l~~a~i~~ad~vi 76 (140)
T 3fwz_A 7 CNHALLVGYGR--VGSLLGEKLLASDIPLVVIETSRTRVDELRE--------RGVRAVLGNAANEEIMQLAHLECAKWLI 76 (140)
T ss_dssp CSCEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred CCCEEEECcCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHH--------cCCCEEECCCCCHHHHHhcCcccCCEEE
Confidence 56799999863 44444433 38899999999998877654 24678889987632 1224688887
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.. ++. ...+-...+.+.|+..++.-.
T Consensus 77 ~~~-----~~~~~n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 77 LTI-----PNGYEAGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp ECC-----SCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred EEC-----CChHHHHHHHHHHHHHCCCCeEEEEE
Confidence 642 232 223444567778888766643
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.55 E-value=0.027 Score=52.27 Aligned_cols=70 Identities=16% Similarity=0.206 Sum_probs=53.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
..+|||+-||.|.+...+.+. | ..|.++|+++..++..+.++. ...++.+|+.++. ++...+|+|+.
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~-G~~~~~v~~~E~d~~a~~~~~~N~~------~~~~~~~Di~~~~~~~~~~~~~D~l~~ 74 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNFP------HTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHCT------TSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCeEEEeCcCccHHHHHHHHC-CCCceEEEEEeCCHHHHHHHHHhcc------ccccccCCHHHccHhHcCcCCcCEEEE
Confidence 468999999999999999887 5 368999999999988887652 3457788988763 11126899987
Q ss_pred ccc
Q 016921 233 MES 235 (380)
Q Consensus 233 ~~~ 235 (380)
..-
T Consensus 75 gpP 77 (343)
T 1g55_A 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred cCC
Confidence 543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.21 Score=45.86 Aligned_cols=91 Identities=14% Similarity=0.138 Sum_probs=63.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CCCccEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD~V 230 (380)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++ .|.. .+ .|..+..+. .+.+|+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----lGa~---~~--~d~~~~~~~~~~~~~~~~~d~v 234 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGAD---LV--VNPLKEDAAKFMKEKVGGVHAA 234 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTCS---EE--ECTTTSCHHHHHHHHHSSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH----CCCC---EE--ecCCCccHHHHHHHHhCCCCEE
Confidence 38999999986 4777778887778999999999988887754 3321 11 233321110 0468988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-.... ...++.+.+.|++||++++..
T Consensus 235 id~~g~------~~~~~~~~~~l~~~G~~v~~g 261 (339)
T 1rjw_A 235 VVTAVS------KPAFQSAYNSIRRGGACVLVG 261 (339)
T ss_dssp EESSCC------HHHHHHHHHHEEEEEEEEECC
T ss_pred EECCCC------HHHHHHHHHHhhcCCEEEEec
Confidence 754321 356888999999999988764
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.4 Score=45.25 Aligned_cols=96 Identities=21% Similarity=0.086 Sum_probs=63.1
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
.++.+||=+|+|. |..+..+++..|+ +|+++|.++..++.+++. |. -.++..+-.++. .....+|
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~i~~~t~g~g~D 284 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL----GA---DHVIDPTKENFVEAVLDYTNGLGAK 284 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH----TC---SEEECTTTSCHHHHHHHHTTTCCCS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc----CC---CEEEcCCCCCHHHHHHHHhCCCCCC
Confidence 4589999999874 7788888887788 999999999988887653 32 122221111110 1234699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhc----CCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVT----APAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~L----kpgG~l~~~~~ 264 (380)
+|+-.- ......+..+.+.| ++||++++...
T Consensus 285 ~vid~~-----g~~~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 285 LFLEAT-----GVPQLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp EEEECS-----SCHHHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred EEEECC-----CCcHHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 887532 23334555565666 99999998654
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.23 E-value=0.2 Score=46.74 Aligned_cols=92 Identities=16% Similarity=0.271 Sum_probs=63.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----CC-----CCCCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QP-----FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-----~~~~~ 226 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++ .|. -.++ |..+ +. ...+.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~~vi--~~~~~~~~~~~~~~~~~~~g 262 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----FGA---TDFV--NPNDHSEPISQVLSKMTNGG 262 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---CEEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----hCC---ceEE--eccccchhHHHHHHHHhCCC
Confidence 489999999874 7788888887787 89999999988887764 332 1122 2221 10 11237
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+|+-.-.. ...++.+.+.|++| |++++...
T Consensus 263 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 263 VDFSLECVGN------VGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCCC------HHHHHHHHHHhhcCCcEEEEEcC
Confidence 9998754321 35688999999999 99887643
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=94.14 E-value=0.053 Score=49.41 Aligned_cols=88 Identities=15% Similarity=0.216 Sum_probs=60.2
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
.++.+||=+|+| .|..+..+++..|++|++++ +++.++.+++. | ...+..|...+ .+.+|+|+-.-.
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~~~l----G----a~~v~~d~~~v---~~g~Dvv~d~~g 208 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALAAKR----G----VRHLYREPSQV---TQKYFAIFDAVN 208 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHHHHH----T----EEEEESSGGGC---CSCEEEEECC--
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHHHHc----C----CCEEEcCHHHh---CCCccEEEECCC
Confidence 459999999997 48888888887799999999 88888877652 3 22222242222 567999875322
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
- ..+..+.+.|++||++++..
T Consensus 209 ~-------~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 S-------QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp ------------TTGGGEEEEEEEEEEC
T ss_pred c-------hhHHHHHHHhcCCCEEEEEe
Confidence 1 12356789999999998874
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.13 E-value=0.4 Score=44.51 Aligned_cols=90 Identities=19% Similarity=0.295 Sum_probs=64.0
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CCCCCCcc
Q 016921 158 RPKNVVDVG-CG-IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~~~~~fD 228 (380)
++.+||=+| +| .|..+..+++.. +++|+++|.+++.++.+++ .|. -.++ |..+ + ....+.+|
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----lGa---d~vi--~~~~~~~~~v~~~~~~g~D 241 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----LGA---HHVI--DHSKPLAAEVAALGLGAPA 241 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----TTC---SEEE--CTTSCHHHHHHTTCSCCEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----cCC---CEEE--eCCCCHHHHHHHhcCCCce
Confidence 588999998 55 688999999874 8999999999988887764 332 1122 2211 1 12235799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+|+-.. .....++.+.+.|++||++++.
T Consensus 242 vvid~~------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 242 FVFSTT------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp EEEECS------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred EEEECC------CchhhHHHHHHHhcCCCEEEEE
Confidence 887532 2345788999999999999886
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.14 Score=47.16 Aligned_cols=93 Identities=17% Similarity=0.115 Sum_probs=61.9
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||-+|+| .|..+..+++..|++|+++|.+++.++.+++. |. . .++...-.++. .....+|+
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----ga--~-~~~~~~~~~~~~~~~~~~~~~g~Dv 216 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRL----GA--A-YVIDTSTAPLYETVMELTNGIGADA 216 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC--S-EEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhC----CC--c-EEEeCCcccHHHHHHHHhCCCCCcE
Confidence 48999999987 57788888887799999999999888877652 32 1 12221111110 12347999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-...- ..+.+..+.|++||++++...
T Consensus 217 vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 217 AIDSIGG-------PDGNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEESSCH-------HHHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCC-------hhHHHHHHHhcCCCEEEEEee
Confidence 8864321 223445589999999988754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.023 Score=52.56 Aligned_cols=92 Identities=17% Similarity=0.099 Sum_probs=64.5
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc----CC-CCCCCCCCCccEE
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG----DA-LQQPFPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~----d~-~~~~~~~~~fD~V 230 (380)
+.+||-+|+|. |..+..+++.. |++|+++|.+++.++.+++. |. -.++.. |. ..+. ....+|+|
T Consensus 171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~vi~~~~~~~~~~~~~-~g~g~D~v 242 (344)
T 2h6e_A 171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALEL----GA---DYVSEMKDAESLINKLT-DGLGASIA 242 (344)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHH----TC---SEEECHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHh----CC---CEEeccccchHHHHHhh-cCCCccEE
Confidence 89999999974 78888899988 99999999999988887652 32 112211 10 0111 12379998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-.-.. ...++.+.+.|++||++++...
T Consensus 243 id~~g~------~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 243 IDLVGT------EETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EESSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred EECCCC------hHHHHHHHHHhhcCCEEEEeCC
Confidence 864321 3468899999999999887643
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=94.08 E-value=0.25 Score=46.00 Aligned_cols=92 Identities=17% Similarity=0.192 Sum_probs=63.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----C-----CCCCCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-----PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~-----~~~~~~ 226 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++. |. -.++ |..+ + ....+.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~~~v~~~~~~g 260 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECI--NPQDFSKPIQEVLIEMTDGG 260 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc----CC---ceEe--ccccccccHHHHHHHHhCCC
Confidence 489999999874 7788888887787 899999999888877642 32 1122 2211 1 011247
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+|+-.... ...++.+.+.|+++ |++++...
T Consensus 261 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 261 VDYSFECIGN------VKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp BSEEEECSCC------HHHHHHHHHTBCTTTCEEEECSC
T ss_pred CCEEEECCCc------HHHHHHHHHhhccCCcEEEEEec
Confidence 9998754321 35688999999999 99887653
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=94.03 E-value=0.24 Score=46.19 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=63.1
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----C-----CCCCCC
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----Q-----PFPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~-----~~~~~~ 226 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++ .|. -.++ |..+ + ....+.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~~vi--~~~~~~~~~~~~~~~~~~~g 261 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGA---TECV--NPQDYKKPIQEVLTEMSNGG 261 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---SEEE--CGGGCSSCHHHHHHHHTTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC---ceEe--cccccchhHHHHHHHHhCCC
Confidence 489999999874 7788888887787 89999999988887754 332 1122 2221 1 011247
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEe
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVT 263 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~ 263 (380)
+|+|+-.-.. ...++.+.+.|++| |++++..
T Consensus 262 ~D~vid~~g~------~~~~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 262 VDFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp BSEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CcEEEECCCC------HHHHHHHHHHhhcCCcEEEEec
Confidence 9998754321 35688899999999 9988764
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.14 Score=46.94 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=64.3
Q ss_pred CCCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
.++.+||-+|+ |.|..+..+++..|++|+++|.+++.++.+++ .|. -.++..+-.+.. .....+|
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga---~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKE----YGA---EYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---cEEEeCCCchHHHHHHHHhCCCCce
Confidence 35899999993 36778888888779999999999988887754 232 122222211110 1234699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-...- ..++.+.+.|++||++++...
T Consensus 220 ~vid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 248 (334)
T 3qwb_A 220 ASFDSVGK-------DTFEISLAALKRKGVFVSFGN 248 (334)
T ss_dssp EEEECCGG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCCh-------HHHHHHHHHhccCCEEEEEcC
Confidence 98865432 357888999999999988653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.24 Score=45.51 Aligned_cols=92 Identities=14% Similarity=0.110 Sum_probs=63.1
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~~f 227 (380)
++.+||-+|+ |.|..+..+++..|++|+++|.++..++.+++. .|. . .++ |..+. . ...+.+
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~---~g~--~-~~~--d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDLLKTK---FGF--D-DAF--NYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT---SCC--S-EEE--ETTSCSCSHHHHHHHCTTCE
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH---cCC--c-eEE--ecCCHHHHHHHHHHHhCCCC
Confidence 4899999997 467777888877789999999999887776532 232 1 122 32221 1 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+.... ...++.+.+.|++||++++...
T Consensus 227 d~vi~~~g-------~~~~~~~~~~l~~~G~~v~~G~ 256 (345)
T 2j3h_A 227 DIYFENVG-------GKMLDAVLVNMNMHGRIAVCGM 256 (345)
T ss_dssp EEEEESSC-------HHHHHHHHTTEEEEEEEEECCC
T ss_pred cEEEECCC-------HHHHHHHHHHHhcCCEEEEEcc
Confidence 99886532 1478899999999999988643
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.24 Score=46.16 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=63.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC-----CCCCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-----~~~~~~fD 228 (380)
++.+||-+|+|. |..+..+++..|+ +|+++|.+++.++.+++ .|. -.++..+- .++ ....+.+|
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~vi~~~~~~~~~~~~i~~~t~gg~D 263 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA---TECLNPKDYDKPIYEVICEKTNGGVD 263 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----cCC---cEEEecccccchHHHHHHHHhCCCCC
Confidence 489999999874 7788888887787 89999999988877764 332 11221110 111 01124799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-.-.. ...++.+.+.|++| |++++...
T Consensus 264 vvid~~g~------~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 264 YAVECAGR------IETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp EEEECSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEECCCC------HHHHHHHHHHHhcCCCEEEEEcc
Confidence 98854321 35688999999999 99887653
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.21 Score=45.57 Aligned_cols=94 Identities=21% Similarity=0.146 Sum_probs=64.6
Q ss_pred CCCCEEEEEC-C-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCcc
Q 016921 157 KRPKNVVDVG-C-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiG-c-GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD 228 (380)
.++.+||-+| + |.|..+..+++..|++|+++|.+++.++.+++. |. -.++..+-.++ ......+|
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----Ga---~~~~~~~~~~~~~~~~~~~~~~g~D 211 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKAL----GA---WETIDYSHEDVAKRVLELTDGKKCP 211 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTCCEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc----CC---CEEEeCCCccHHHHHHHHhCCCCce
Confidence 3589999998 3 468888888887799999999999988877642 32 12222211111 01235799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-...- ..+..+.+.|++||++++...
T Consensus 212 vvid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 212 VVYDGVGQ-------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEEESSCG-------GGHHHHHTTEEEEEEEEECCC
T ss_pred EEEECCCh-------HHHHHHHHHhcCCCEEEEEec
Confidence 98864332 357788999999999998754
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.2 Score=46.19 Aligned_cols=92 Identities=18% Similarity=0.217 Sum_probs=63.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||-+|+| .|..+..+++..|+ +|+++|.+++.++.+++. |. -.++ |..+.. .....+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~----Ga---~~~~--~~~~~~~~~~v~~~~~g~g~ 237 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKV----GA---DYVI--NPFEEDVVKEVMDITDGNGV 237 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHH----TC---SEEE--CTTTSCHHHHHHHHTTTSCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh----CC---CEEE--CCCCcCHHHHHHHHcCCCCC
Confidence 48899999986 37777888887788 999999999888877642 32 1122 222211 112369
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.... ...++.+.+.|+++|++++...
T Consensus 238 D~vid~~g~------~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 238 DVFLEFSGA------PKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp EEEEECSCC------HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCCC------HHHHHHHHHHHhcCCEEEEEcc
Confidence 998864321 3568889999999999887653
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=1.3 Score=45.04 Aligned_cols=174 Identities=11% Similarity=0.043 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc---------CCEEEEEeCCHHHHHHHHHHHHHcC--
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---------GAKCQGITLSPVQAQRANALAAARG-- 205 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---------~~~v~giD~s~~~~~~a~~~~~~~~-- 205 (380)
...+++++.+.... . .+...|+-||||.=.....+.... +..++=+|. |+.++.=++.+...+
T Consensus 91 ~~d~~v~~fl~~~~-~----~~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~-p~v~~~K~~~l~~~~~l 164 (695)
T 2zwa_A 91 AIRSRLNSIIEQTP-Q----DKKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDY-SDLLKIKIELIKTIPEL 164 (695)
T ss_dssp HHHHHHHHHHHHSC-T----TSEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEEC-HHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHhccc-C----CCCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECcc-HHHHHHHHHHHHcChHH
Confidence 34455555555431 1 125689999999988888886541 335555666 444444444443211
Q ss_pred ------------CC---------CCeEEEEcCCCCCC----------C-CCCCccEEEeccccCCCCC--HHHHHHHHHH
Q 016921 206 ------------LA---------DKVSFQVGDALQQP----------F-PDGQFDLVWSMESGEHMPD--KSKFVSELAR 251 (380)
Q Consensus 206 ------------~~---------~~v~~~~~d~~~~~----------~-~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r 251 (380)
.+ ++..++..|+.+.. + ..+..-++++-.++.+++. ..++|+.+.+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~ 244 (695)
T 2zwa_A 165 SKIIGLSEDKDYVDDSNVDFLTTPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK 244 (695)
T ss_dssp HHHTTCCSSCSSCSCTTCCCEECSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT
T ss_pred HHhhccccccccccccccccccCCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh
Confidence 01 37888999998741 2 3333445667778888853 4678888775
Q ss_pred hcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc-cCCCCCCCHHHHHHHHHhCCCcEEEEEecC
Q 016921 252 VTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA-YYLPAWCSTADYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 252 ~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~ 320 (380)
+ ++|.+++.+...+.. ....+...+...+...... ..+..+.+.++..+.|.++||+.+...++.
T Consensus 245 -~-~~~~~~~~e~~~~~~--~~d~f~~~m~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~~ 310 (695)
T 2zwa_A 245 -M-ENSHFIILEQLIPKG--PFEPFSKQMLAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDMF 310 (695)
T ss_dssp -S-SSEEEEEEEECCTTC--TTSHHHHHHHHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEHH
T ss_pred -C-CCceEEEEEeecCCC--CCChHHHHHHHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeHH
Confidence 4 677777777443211 1122222222222221111 111235689999999999999987766443
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.27 Score=45.89 Aligned_cols=92 Identities=17% Similarity=0.180 Sum_probs=63.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC----CC-----CCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ----QP-----FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~----~~-----~~~~~ 226 (380)
++.+||-+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|. -.++ |..+ +. ...+.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----lGa---~~vi--~~~~~~~~~~~~v~~~~~~g 265 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----LGA---TDCL--NPRELDKPVQDVITELTAGG 265 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTC---SEEE--CGGGCSSCHHHHHHHHHTSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----hCC---cEEE--ccccccchHHHHHHHHhCCC
Confidence 48999999987 47788888887787 89999999988877754 332 1122 2221 10 11237
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+|+-.-.- ...++.+.+.|++| |++++...
T Consensus 266 ~Dvvid~~G~------~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 266 VDYSLDCAGT------AQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp BSEEEESSCC------HHHHHHHHHTBCTTTCEEEECCC
T ss_pred ccEEEECCCC------HHHHHHHHHHhhcCCCEEEEECC
Confidence 9988754321 35688999999999 99887643
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.81 E-value=0.31 Score=45.25 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=64.1
Q ss_pred CCCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccEE
Q 016921 158 RPKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~V 230 (380)
++.+||-+| +|.|..+..+++..|++|+++|.+++.++.+++ .|. -.++..+-.++ ....+.+|+|
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~~~~~~~~g~D~v 235 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKS----LGC---DRPINYKTEPVGTVLKQEYPEGVDVV 235 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHCTTCEEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHH----cCC---cEEEecCChhHHHHHHHhcCCCCCEE
Confidence 489999999 347888888888778999999999988877764 332 12222211111 0112469998
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... . ..++.+.+.|+++|++++...
T Consensus 236 id~~g-----~--~~~~~~~~~l~~~G~iv~~g~ 262 (362)
T 2c0c_A 236 YESVG-----G--AMFDLAVDALATKGRLIVIGF 262 (362)
T ss_dssp EECSC-----T--HHHHHHHHHEEEEEEEEECCC
T ss_pred EECCC-----H--HHHHHHHHHHhcCCEEEEEeC
Confidence 86533 1 478889999999999888653
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=93.72 E-value=0.19 Score=46.35 Aligned_cols=92 Identities=23% Similarity=0.322 Sum_probs=63.7
Q ss_pred CCCEEEEECCC--cChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCC-CC
Q 016921 158 RPKNVVDVGCG--IGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPD-GQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~-~~ 226 (380)
++.+||-+|+| .|..+..+++.. |++|+++|.+++.++.+++. |. . .++ |..+.. ... +.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~-~~~--~~~~~~~~~~~~~~~~~~~ 240 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA--D-YVI--NASMQDPLAEIRRITESKG 240 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC--S-EEE--ETTTSCHHHHHHHHTTTSC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHh----CC--C-EEe--cCCCccHHHHHHHHhcCCC
Confidence 48999999987 566777788877 89999999999888877542 32 1 122 222111 112 47
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+|+....- ...++.+.+.|++||++++...
T Consensus 241 ~d~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 241 VDAVIDLNNS------EKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp EEEEEESCCC------HHHHTTGGGGEEEEEEEEECCS
T ss_pred ceEEEECCCC------HHHHHHHHHHHhcCCEEEEECC
Confidence 9998865331 3467888999999999887643
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.60 E-value=0.17 Score=46.72 Aligned_cols=93 Identities=19% Similarity=0.262 Sum_probs=63.8
Q ss_pred CCCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
.++.+||-+|+ |.|..+..+++..|++|++++.+++.++.+++. |. -.++..+ .++. .....+|
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----ga---~~v~~~~-~~~~~~v~~~~~~~g~D 229 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSV----GA---DIVLPLE-EGWAKAVREATGGAGVD 229 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEESS-TTHHHHHHHHTTTSCEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---cEEecCc-hhHHHHHHHHhCCCCce
Confidence 34899999997 468888888887799999999999888777652 32 1223222 2210 1234799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-...- ..+..+.+.|++||++++...
T Consensus 230 vvid~~g~-------~~~~~~~~~l~~~G~iv~~G~ 258 (342)
T 4eye_A 230 MVVDPIGG-------PAFDDAVRTLASEGRLLVVGF 258 (342)
T ss_dssp EEEESCC---------CHHHHHHTEEEEEEEEEC--
T ss_pred EEEECCch-------hHHHHHHHhhcCCCEEEEEEc
Confidence 99865432 257788999999999988653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.57 E-value=0.35 Score=44.48 Aligned_cols=92 Identities=21% Similarity=0.207 Sum_probs=64.4
Q ss_pred CCCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCC
Q 016921 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQ 226 (380)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 226 (380)
.++.+||-+|+ |.|..+..+++..|++|+++|.+++.++.+++ .|. . .++ |..+.. .....
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~ga--~-~~~--d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKA----LGA--D-ETV--NYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC--S-EEE--ETTSTTHHHHHHHHTTTTC
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--C-EEE--cCCcccHHHHHHHHhCCCC
Confidence 35899999998 57788888888778999999999998887764 232 1 122 322211 12247
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+|+.... . ..++.+.+.|+++|++++...
T Consensus 236 ~d~vi~~~g-~------~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T 2eih_A 236 ADKVVDHTG-A------LYFEGVIKATANGGRIAIAGA 266 (343)
T ss_dssp EEEEEESSC-S------SSHHHHHHHEEEEEEEEESSC
T ss_pred ceEEEECCC-H------HHHHHHHHhhccCCEEEEEec
Confidence 999986544 2 247788899999999887653
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.55 E-value=0.2 Score=45.76 Aligned_cols=91 Identities=15% Similarity=0.089 Sum_probs=62.3
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||-+|+ |.|..+..++...|++|+++|.+++.++.+++. +. . .++ |..+.. .....+
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~----g~--~-~~~--~~~~~~~~~~~~~~~~~~~~ 210 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GA--W-QVI--NYREEDLVERLKEITGGKKV 210 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC--S-EEE--ETTTSCHHHHHHHHTTTCCE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--C-EEE--ECCCccHHHHHHHHhCCCCc
Confidence 4899999993 467777777776689999999999888777652 32 1 122 222211 123469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+.... ...++.+.+.|++||++++...
T Consensus 211 D~vi~~~g-------~~~~~~~~~~l~~~G~iv~~g~ 240 (327)
T 1qor_A 211 RVVYDSVG-------RDTWERSLDCLQRRGLMVSFGN 240 (327)
T ss_dssp EEEEECSC-------GGGHHHHHHTEEEEEEEEECCC
T ss_pred eEEEECCc-------hHHHHHHHHHhcCCCEEEEEec
Confidence 99886543 2457889999999999887653
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.063 Score=50.35 Aligned_cols=94 Identities=22% Similarity=0.255 Sum_probs=64.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC--CCCC-----CCCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGD--ALQQ-----PFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d--~~~~-----~~~~~~fD 228 (380)
++.+||=+|+| .|..+..+++..|+ +|+++|.+++.++.+++ .|.. .++... -.++ ...++.+|
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----lGa~---~vi~~~~~~~~~~~~i~~~~~gg~D 265 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----FGVN---EFVNPKDHDKPIQEVIVDLTDGGVD 265 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----TTCC---EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----cCCc---EEEccccCchhHHHHHHHhcCCCCC
Confidence 48899999987 48888888887787 89999999988887754 3321 222111 1111 01124799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-... . ...++.+.+.|++| |++++...
T Consensus 266 ~vid~~g-----~-~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 266 YSFECIG-----N-VSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp EEEECSC-----C-HHHHHHHHHTBCTTTCEEEECSC
T ss_pred EEEECCC-----C-HHHHHHHHHHhhccCCEEEEEcc
Confidence 9885432 1 35688999999997 99988654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.19 Score=46.39 Aligned_cols=92 Identities=21% Similarity=0.218 Sum_probs=62.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C-------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P-------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~-------~~~~~f 227 (380)
++.+||-+|+ |.|..+..++...|++|+++|.+++.++.+++ .|. . .++ |..+. . ...+.+
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~----~g~--~-~~~--d~~~~~~~~~~~~~~~~~~~ 239 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRS----IGG--E-VFI--DFTKEKDIVGAVLKATDGGA 239 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHH----TTC--C-EEE--ETTTCSCHHHHHHHHHTSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH----cCC--c-eEE--ecCccHhHHHHHHHHhCCCC
Confidence 4899999998 46777777777668999999999887766654 232 1 122 33211 1 011268
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+..... ...++.+.+.|++||++++...
T Consensus 240 D~vi~~~g~------~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 240 HGVINVSVS------EAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEEEECSSC------HHHHHHHTTSEEEEEEEEECCC
T ss_pred CEEEECCCc------HHHHHHHHHHHhcCCEEEEEeC
Confidence 998865431 3578899999999999887643
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.35 E-value=0.67 Score=43.38 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=34.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALA 201 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------~~~v~giD~s~~~~~~a~~~~ 201 (380)
+..|+|+|.|+|.++..+.+.. ..+++.||+|+...+.-++++
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L 131 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL 131 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHh
Confidence 5689999999999998887643 248999999998877555544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=93.26 E-value=0.17 Score=46.64 Aligned_cols=93 Identities=16% Similarity=0.146 Sum_probs=65.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||-+|+|. |..+..+++.. +.+|+++|.+++.++.+++ .|.. .++..+- +.. .....+|+
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----lGa~---~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----VGAD---AAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----TTCS---EEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----cCCC---EEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 489999999874 88888888877 7899999999998888765 3321 2222211 110 01237898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-. . ...++.+.+.|++||++++...
T Consensus 243 v~d~~G-----~-~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 243 VFDFVG-----A-QSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEESSC-----C-HHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCC-----C-HHHHHHHHHHHhcCCEEEEECC
Confidence 875332 1 3478899999999999998754
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.16 Score=47.17 Aligned_cols=89 Identities=16% Similarity=0.194 Sum_probs=60.8
Q ss_pred CEEEEECCC-cChHH-HHHH-HHcCCE-EEEEeCCHH---HHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-----CCCc
Q 016921 160 KNVVDVGCG-IGGSS-RYLA-KKFGAK-CQGITLSPV---QAQRANALAAARGLADKVSFQVGDALQQPFP-----DGQF 227 (380)
Q Consensus 160 ~~vLDiGcG-tG~~~-~~l~-~~~~~~-v~giD~s~~---~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-----~~~f 227 (380)
.+||-+|+| .|..+ ..++ +..|++ |+++|.+++ .++.+++ .| ...+ |..+..+. .+.+
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~----lG----a~~v--~~~~~~~~~i~~~~gg~ 243 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEE----LD----ATYV--DSRQTPVEDVPDVYEQM 243 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHH----TT----CEEE--ETTTSCGGGHHHHSCCE
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHH----cC----Cccc--CCCccCHHHHHHhCCCC
Confidence 899999986 47778 8888 766876 999999887 7777654 33 2222 33321111 1368
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-... . ...++.+.+.|++||++++...
T Consensus 244 Dvvid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 244 DFIYEATG-----F-PKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp EEEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred CEEEECCC-----C-hHHHHHHHHHHhcCCEEEEEeC
Confidence 98875322 1 3468899999999999888653
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.27 Score=45.49 Aligned_cols=90 Identities=17% Similarity=0.232 Sum_probs=62.0
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||-+|+ |.|..+..+++..|++|+++|.+++.++.+++ .|. . .++ |..+.. .....+
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~~--d~~~~~~~~~~~~~~~~~~~ 240 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA--H-EVF--NHREVNYIDKIKKYVGEKGI 240 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC--S-EEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHH----cCC--C-EEE--eCCCchHHHHHHHHcCCCCc
Confidence 4899999996 46777777777778999999999988776643 232 1 122 222211 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+.... ...+..+.+.|++||++++..
T Consensus 241 D~vi~~~G-------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 241 DIIIEMLA-------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEESCH-------HHHHHHHHHHEEEEEEEEECC
T ss_pred EEEEECCC-------hHHHHHHHHhccCCCEEEEEe
Confidence 99886533 235778899999999988765
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=93.10 E-value=0.46 Score=43.88 Aligned_cols=92 Identities=12% Similarity=0.120 Sum_probs=61.9
Q ss_pred CC--CEEEEECC--CcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCC
Q 016921 158 RP--KNVVDVGC--GIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDG 225 (380)
Q Consensus 158 ~~--~~vLDiGc--GtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~ 225 (380)
++ .+||-.|+ |.|..+..++...|+ +|+++|.+++.++.+++. .|. . .++ |..+.. ...+
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~---~g~--~-~~~--d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSE---LGF--D-AAI--NYKKDNVAEQLRESCPA 229 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT---SCC--S-EEE--ETTTSCHHHHHHHHCTT
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHH---cCC--c-eEE--ecCchHHHHHHHHhcCC
Confidence 37 89999997 456677777776688 999999998777666532 232 1 122 322211 1112
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|+|+.... ...++.+.+.|++||++++...
T Consensus 230 ~~d~vi~~~G-------~~~~~~~~~~l~~~G~iv~~G~ 261 (357)
T 2zb4_A 230 GVDVYFDNVG-------GNISDTVISQMNENSHIILCGQ 261 (357)
T ss_dssp CEEEEEESCC-------HHHHHHHHHTEEEEEEEEECCC
T ss_pred CCCEEEECCC-------HHHHHHHHHHhccCcEEEEECC
Confidence 6898886543 2678899999999999988653
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.35 Score=44.58 Aligned_cols=90 Identities=14% Similarity=0.265 Sum_probs=62.5
Q ss_pred CCCEEEEE-CCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-C-----CCCCCCccE
Q 016921 158 RPKNVVDV-GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-Q-----PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDi-GcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-----~~~~~~fD~ 229 (380)
++.+||=+ |+| .|..+..+++..|++|+++|.+++.++.+++. |. -.++ |..+ + ....+.+|+
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~vi--~~~~~~~~~~~~~~~~g~Dv 220 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKM----GA---DIVL--NHKESLLNQFKTQGIELVDY 220 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHH----TC---SEEE--CTTSCHHHHHHHHTCCCEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---cEEE--ECCccHHHHHHHhCCCCccE
Confidence 48899999 455 57788888887799999999999988887762 32 1112 2211 1 012357998
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
|+-.. .....++.+.+.|+++|+++..
T Consensus 221 v~d~~------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 221 VFCTF------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp EEESS------CHHHHHHHHHHHEEEEEEEEES
T ss_pred EEECC------CchHHHHHHHHHhccCCEEEEE
Confidence 88542 2345678999999999999764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.34 Score=44.79 Aligned_cols=92 Identities=16% Similarity=0.117 Sum_probs=62.2
Q ss_pred CCCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCC
Q 016921 157 KRPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQ 226 (380)
Q Consensus 157 ~~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~ 226 (380)
.++.+||-+|+ |.|..+..++...|++|+++|.+++.++.+++. |. . ..+ |..+.. .....
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~----g~--~-~~~--~~~~~~~~~~~~~~~~~~~ 231 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKL----GA--A-AGF--NYKKEDFSEATLKFTKGAG 231 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----TC--S-EEE--ETTTSCHHHHHHHHTTTSC
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHc----CC--c-EEE--ecCChHHHHHHHHHhcCCC
Confidence 34899999983 467777777776789999999999888877432 32 1 122 222211 12246
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+|+....- ..++.+.+.|++||++++...
T Consensus 232 ~d~vi~~~G~-------~~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 232 VNLILDCIGG-------SYWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEEEESSCG-------GGHHHHHHHEEEEEEEEECCC
T ss_pred ceEEEECCCc-------hHHHHHHHhccCCCEEEEEec
Confidence 9998865432 246788899999999888653
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.28 Score=45.94 Aligned_cols=95 Identities=18% Similarity=0.113 Sum_probs=64.3
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC---CCCC-----C-CCCC
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGD---ALQQ-----P-FPDG 225 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d---~~~~-----~-~~~~ 225 (380)
.++.+||-+|+| .|..+..+++..| .+|+++|.+++.++.+++ .|. -.++..+ -.++ . ....
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----lGa---~~vi~~~~~~~~~~~~~v~~~~~g~ 266 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----IGA---DLTLNRRETSVEERRKAIMDITHGR 266 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----cCC---cEEEeccccCcchHHHHHHHHhCCC
Confidence 348999999977 4778888888778 699999999988887764 332 1222221 0010 0 1223
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|+|+-.... ...++.+.+.|++||++++...
T Consensus 267 g~Dvvid~~g~------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 267 GADFILEATGD------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp CEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CCcEEEECCCC------HHHHHHHHHHHhcCCEEEEEec
Confidence 69998854321 2357888999999999888643
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.17 Score=45.66 Aligned_cols=56 Identities=25% Similarity=0.412 Sum_probs=39.2
Q ss_pred CCeEEEEcCCCCC--CCCCCCccEEEeccccCCC--------------------CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 208 DKVSFQVGDALQQ--PFPDGQFDLVWSMESGEHM--------------------PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 208 ~~v~~~~~d~~~~--~~~~~~fD~V~~~~~l~~~--------------------~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++.++++|..+. .+++++||+|++.=-.... .....+++++.++|||||.+++..
T Consensus 20 ~~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 20 GVHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp -CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 3678999998762 2567899999985322111 012357789999999999998864
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=92.54 E-value=0.99 Score=35.24 Aligned_cols=90 Identities=11% Similarity=0.091 Sum_probs=55.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
..+|+=+|+| .++..+++.+ |.+|+++|.+++.++.+++ ..+.++.+|..+.. ..-..+|+|+
T Consensus 6 ~~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~--------~~~~~~~gd~~~~~~l~~~~~~~~d~vi 75 (141)
T 3llv_A 6 RYEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED--------EGFDAVIADPTDESFYRSLDLEGVSAVL 75 (141)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH--------TTCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH--------CCCcEEECCCCCHHHHHhCCcccCCEEE
Confidence 4579999985 4555555544 7899999999987766553 23678888887631 1235689887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.... . .+....+-...+.+. ...++..
T Consensus 76 ~~~~--~-~~~n~~~~~~a~~~~-~~~iia~ 102 (141)
T 3llv_A 76 ITGS--D-DEFNLKILKALRSVS-DVYAIVR 102 (141)
T ss_dssp ECCS--C-HHHHHHHHHHHHHHC-CCCEEEE
T ss_pred EecC--C-HHHHHHHHHHHHHhC-CceEEEE
Confidence 6432 1 112233344455555 5555553
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.29 Score=45.23 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=63.6
Q ss_pred CCCCEEEEEC-C-CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccE
Q 016921 157 KRPKNVVDVG-C-GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDL 229 (380)
Q Consensus 157 ~~~~~vLDiG-c-GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~ 229 (380)
.++.+||-+| + |.|..+..+++..|++|+++|.+++.++.+++. |. -.++..+-.+.. ...+.+|+
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~l----Ga---~~~~~~~~~~~~~~~~~~~~~g~Dv 238 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERL----GA---KRGINYRSEDFAAVIKAETGQGVDI 238 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHHSSCEEE
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CC---CEEEeCCchHHHHHHHHHhCCCceE
Confidence 3589999995 3 367788888887799999999999988877652 32 122222111110 01347999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-...- ..+..+.+.|++||++++...
T Consensus 239 vid~~g~-------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 239 ILDMIGA-------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp EEESCCG-------GGHHHHHHTEEEEEEEEECCC
T ss_pred EEECCCH-------HHHHHHHHHhccCCEEEEEEe
Confidence 8865432 257788999999999888653
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=92.49 E-value=0.74 Score=44.17 Aligned_cols=93 Identities=24% Similarity=0.220 Sum_probs=64.1
Q ss_pred CCCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------------
Q 016921 157 KRPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------------- 221 (380)
Q Consensus 157 ~~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------------- 221 (380)
.++.+||=+|+ | .|..+..+++..|+++++++.++.-++.+++ .|. ..++...-.+..
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~----lGa---~~vi~~~~~d~~~~~~~~~~~~~~~ 299 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRA----MGA---EAIIDRNAEGYRFWKDENTQDPKEW 299 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC---CEEEETTTTTCCSEEETTEECHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHh----hCC---cEEEecCcCcccccccccccchHHH
Confidence 45899999997 4 6888888888779999999999988888765 232 112221111110
Q ss_pred ----------CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 ----------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ----------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+|+|+-.-. ...+..+.+.|++||++++..
T Consensus 300 ~~~~~~i~~~t~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 300 KRFGKRIRELTGGEDIDIVFEHPG-------RETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHHTSCCEEEEEECSC-------HHHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHHhCCCCCcEEEEcCC-------chhHHHHHHHhhCCcEEEEEe
Confidence 11247998875322 157888999999999998864
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.66 Score=42.51 Aligned_cols=94 Identities=19% Similarity=0.204 Sum_probs=62.0
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||=+|+|. |..+..+++..|+ .++++|.+++-++.+++ .|. ..++..+-.+.+ .....+|+
T Consensus 160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----lGa---~~~i~~~~~~~~~~~~~~~~~~g~d~ 232 (346)
T 4a2c_A 160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----FGA---MQTFNSSEMSAPQMQSVLRELRFNQL 232 (346)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----cCC---eEEEeCCCCCHHHHHHhhcccCCccc
Confidence 489999999874 6677777877765 57899999998887765 332 222222211110 11245787
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-... ....++.+.+.|++||.+++...
T Consensus 233 v~d~~G------~~~~~~~~~~~l~~~G~~v~~g~ 261 (346)
T 4a2c_A 233 ILETAG------VPQTVELAVEIAGPHAQLALVGT 261 (346)
T ss_dssp EEECSC------SHHHHHHHHHHCCTTCEEEECCC
T ss_pred cccccc------ccchhhhhhheecCCeEEEEEec
Confidence 764322 24578889999999999988653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.28 Score=45.59 Aligned_cols=88 Identities=15% Similarity=0.221 Sum_probs=59.7
Q ss_pred CCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC------CCCcc
Q 016921 159 PKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSP---VQAQRANALAAARGLADKVSFQVGDALQQPFP------DGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~---~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------~~~fD 228 (380)
+.+||-+|+| .|..+..+++..|++|+++|.++ +.++.+++ .| ...+ | .+ .+. .+.+|
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~----~g----a~~v--~-~~-~~~~~~~~~~~~~d 248 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEE----TK----TNYY--N-SS-NGYDKLKDSVGKFD 248 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHH----HT----CEEE--E-CT-TCSHHHHHHHCCEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHH----hC----Ccee--c-hH-HHHHHHHHhCCCCC
Confidence 7899999985 36666677776688999999987 76666654 23 2222 3 22 211 14699
Q ss_pred EEEeccccCCCCCHHHHH-HHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFV-SELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l-~~~~r~LkpgG~l~~~~~ 264 (380)
+|+...... ..+ +.+.+.|++||++++...
T Consensus 249 ~vid~~g~~------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 249 VIIDATGAD------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp EEEECCCCC------THHHHHHGGGEEEEEEEEECSC
T ss_pred EEEECCCCh------HHHHHHHHHHHhcCCEEEEEec
Confidence 988654321 245 888999999999888643
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.41 Score=43.73 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=62.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||-+|+ |.|..+..++...|++|+++|.+++.++.+++ .|. . ..+ |..+.. .....+
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~----~g~--~-~~~--d~~~~~~~~~i~~~~~~~~~ 215 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARK----LGC--H-HTI--NYSTQDFAEVVREITGGKGV 215 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----HTC--S-EEE--ETTTSCHHHHHHHHHTTCCE
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC--C-EEE--ECCCHHHHHHHHHHhCCCCC
Confidence 4899999995 56777777777778999999999988777754 232 1 122 322211 112469
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+....- ..++.+.+.|++||++++...
T Consensus 216 d~vi~~~g~-------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 216 DVVYDSIGK-------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEEEECSCT-------TTHHHHHHTEEEEEEEEECCC
T ss_pred eEEEECCcH-------HHHHHHHHhhccCCEEEEEec
Confidence 998865432 357888999999999887653
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=92.35 E-value=0.016 Score=53.64 Aligned_cols=91 Identities=18% Similarity=0.240 Sum_probs=62.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-------CCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-------PDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------~~~~fD 228 (380)
++.+||-+|+| .|..+..+++..|+ +|+++|.+++.++.+++. . . .++ |..+..+ ....+|
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a-----~--~v~--~~~~~~~~~~~~~~~~~g~D 233 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-A-----D--RLV--NPLEEDLLEVVRRVTGSGVE 233 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-C-----S--EEE--CTTTSCHHHHHHHHHSSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-H-----H--hcc--CcCccCHHHHHHHhcCCCCC
Confidence 48899999986 37778888887788 899999999877766542 1 1 111 2222110 024699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-... . ...++.+.+.|+++|++++...
T Consensus 234 ~vid~~g-----~-~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 234 VLLEFSG-----N-EAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp EEEECSC-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-----C-HHHHHHHHHHHhcCCEEEEEec
Confidence 9875432 1 3568889999999999887643
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.059 Score=50.14 Aligned_cols=95 Identities=21% Similarity=0.215 Sum_probs=62.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC-CC--CCCCCCccEEEec
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL-QQ--PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~-~~--~~~~~~fD~V~~~ 233 (380)
++.+||-+|+| .|..+..+++..|++|+++|.++..++.+++ .|. -.++..+-. +. ... +.+|+|+-.
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~----lGa---~~v~~~~~~~~~~~~~~-~~~D~vid~ 250 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMK----MGA---DHYIATLEEGDWGEKYF-DTFDLIVVC 250 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHH----HTC---SEEEEGGGTSCHHHHSC-SCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cCC---CEEEcCcCchHHHHHhh-cCCCEEEEC
Confidence 48999999986 4778888888779999999999988887765 232 122222111 11 111 479999865
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..... ...++.+.+.|++||++++...
T Consensus 251 ~g~~~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 251 ASSLT----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CSCST----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCCCc----HHHHHHHHHHhcCCCEEEEecC
Confidence 43200 1235567889999999887643
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=91.96 E-value=0.42 Score=43.81 Aligned_cols=66 Identities=17% Similarity=0.072 Sum_probs=49.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~ 233 (380)
+.+|||+.||.|.+...+.+. |. .+.++|+++...+..+.+... .. .+|+.++... -..+|+|+..
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~a-G~~~v~~~e~d~~a~~t~~~N~~~------~~--~~Di~~~~~~~~~~~D~l~~g 78 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE------KP--EGDITQVNEKTIPDHDILCAG 78 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC------CC--BSCGGGSCGGGSCCCSEEEEE
T ss_pred CCcEEEECCCcCHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHcCC------CC--cCCHHHcCHhhCCCCCEEEEC
Confidence 679999999999999999876 55 477899999999888877632 11 5777765311 1258999874
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.2 Score=45.68 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=62.1
Q ss_pred EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccccC
Q 016921 161 NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (380)
Q Consensus 161 ~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (380)
+||=+|+ |.|..+..+++..|++|+++|.+++.++.+++. |.. ..+-..+.... .+..+.+|+|+-.-
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~~l----Ga~--~vi~~~~~~~~~~~~~~~~d~v~d~~--- 219 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLKSL----GAN--RILSRDEFAESRPLEKQLWAGAIDTV--- 219 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TCS--EEEEGGGSSCCCSSCCCCEEEEEESS---
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhc----CCC--EEEecCCHHHHHhhcCCCccEEEECC---
Confidence 4999996 478889999988899999999999888887652 321 11111111111 12245799876432
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.. ..++.+.+.|+++|++++...
T Consensus 220 --g~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 220 --GD--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp --CH--HHHHHHHHTEEEEEEEEECCC
T ss_pred --Cc--HHHHHHHHHHhcCCEEEEEec
Confidence 22 378999999999999988653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=91.72 E-value=0.92 Score=41.15 Aligned_cols=90 Identities=17% Similarity=0.058 Sum_probs=58.0
Q ss_pred CCCEEEEEC-CC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC-CCCCCCCccEEEecc
Q 016921 158 RPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ-QPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiG-cG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~~fD~V~~~~ 234 (380)
++.+||=+| +| .|..+..+++..|++|++++ ++..++.+++ .|.. .++..+-.+ +.-.-..+|+|+-.-
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~~~~~----lGa~---~~i~~~~~~~~~~~~~g~D~v~d~~ 223 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHAFLKA----LGAE---QCINYHEEDFLLAISTPVDAVIDLV 223 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHHHHHH----HTCS---EEEETTTSCHHHHCCSCEEEEEESS
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHHHHHH----cCCC---EEEeCCCcchhhhhccCCCEEEECC
Confidence 489999996 55 68888889988899999998 4544555544 3431 222221111 110114689887532
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
. . ..+..+.+.|++||++++.
T Consensus 224 g------~-~~~~~~~~~l~~~G~iv~~ 244 (321)
T 3tqh_A 224 G------G-DVGIQSIDCLKETGCIVSV 244 (321)
T ss_dssp C------H-HHHHHHGGGEEEEEEEEEC
T ss_pred C------c-HHHHHHHHhccCCCEEEEe
Confidence 2 1 2348899999999999875
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.5 Score=43.41 Aligned_cols=93 Identities=15% Similarity=0.071 Sum_probs=59.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=+|+|. |..+..+++.. +++|+++|.+++-++.+++ .|. ..++...-.+. -.....+|.
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~Ga---~~~i~~~~~~~~~~v~~~t~g~g~d~ 235 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----IGA---DVTINSGDVNPVDEIKKITGGLGVQS 235 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----TTC---SEEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----cCC---eEEEeCCCCCHHHHhhhhcCCCCceE
Confidence 489999999985 45556666655 8899999999988776654 332 12221111111 012235666
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++.... -...+....+.|+++|.+++..
T Consensus 236 ~~~~~~------~~~~~~~~~~~l~~~G~~v~~g 263 (348)
T 4eez_A 236 AIVCAV------ARIAFEQAVASLKPMGKMVAVA 263 (348)
T ss_dssp EEECCS------CHHHHHHHHHTEEEEEEEEECC
T ss_pred EEEecc------CcchhheeheeecCCceEEEEe
Confidence 654321 2467889999999999988865
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.56 E-value=3.1 Score=36.59 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=54.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++..++...+.+...+.+.++.++.+|+.+.. +. -+
T Consensus 32 ~k~vlVTG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 110 (279)
T 1xg5_A 32 DRLALVTG-ASGGIGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 110 (279)
T ss_dssp TCEEEEES-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 56788777 4566666666654 88999999998877766666665555456888999987642 00 13
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|+|+.+..+.
T Consensus 111 ~iD~vi~~Ag~~ 122 (279)
T 1xg5_A 111 GVDICINNAGLA 122 (279)
T ss_dssp CCSEEEECCCCC
T ss_pred CCCEEEECCCCC
Confidence 689988766543
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=91.46 E-value=0.43 Score=43.90 Aligned_cols=90 Identities=14% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 157 KRPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 157 ~~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
.++.+||-+|+ | .|..+..+++..|++|+++ .+++.++.+++ .|. ..+. +-.+.. .....+|
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~~~----lGa----~~i~-~~~~~~~~~~~~~~~~g~D 218 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYVRD----LGA----TPID-ASREPEDYAAEHTAGQGFD 218 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHHHH----HTS----EEEE-TTSCHHHHHHHHHTTSCEE
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHHHH----cCC----CEec-cCCCHHHHHHHHhcCCCce
Confidence 35899999993 3 6888888888779999999 88888777654 232 2222 222210 1234799
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-.-. . ..+..+.+.|+++|++++..
T Consensus 219 ~vid~~g-----~--~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 219 LVYDTLG-----G--PVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEEESSC-----T--HHHHHHHHHEEEEEEEEESC
T ss_pred EEEECCC-----c--HHHHHHHHHHhcCCeEEEEc
Confidence 8875432 1 46888999999999988754
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.24 Score=45.94 Aligned_cols=94 Identities=17% Similarity=0.199 Sum_probs=60.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~-~~~~~~fD~V~~~~ 234 (380)
++.+||=+|+| .|..+..+++..|++|+++|.+++.++.+++ +.|.. . ++.. +...+ .. .+.+|+|+-.-
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~---~lGa~-~--vi~~~~~~~~~~~-~~g~D~vid~~ 252 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQ---DLGAD-D--YVIGSDQAKMSEL-ADSLDYVIDTV 252 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHT---TSCCS-C--EEETTCHHHHHHS-TTTEEEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH---HcCCc-e--eeccccHHHHHHh-cCCCCEEEECC
Confidence 48999999987 4777778887779999999999877766552 12321 1 1211 10000 01 14699988543
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.-. ..++.+.+.|++||++++...
T Consensus 253 g~~------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 253 PVH------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp CSC------CCSHHHHTTEEEEEEEEECSC
T ss_pred CCh------HHHHHHHHHhccCCEEEEeCC
Confidence 321 135667889999999888643
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=91.34 E-value=0.29 Score=45.52 Aligned_cols=93 Identities=27% Similarity=0.278 Sum_probs=60.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC---CCCCCCCccEEEec
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ---QPFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~---~~~~~~~fD~V~~~ 233 (380)
++.+||=+|+| .|..+..+++..|++|+++|.+++.++.+++. .|. ..++ |..+ +.-..+.+|+|+-.
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~---lGa---~~v~--~~~~~~~~~~~~~~~D~vid~ 258 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKN---FGA---DSFL--VSRDQEQMQAAAGTLDGIIDT 258 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHT---SCC---SEEE--ETTCHHHHHHTTTCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHh---cCC---ceEE--eccCHHHHHHhhCCCCEEEEC
Confidence 48899999986 37777778877789999999998777665432 232 1222 2211 10001469998865
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-.... .++.+.+.|+++|+++....
T Consensus 259 ~g~~~------~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 259 VSAVH------PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp CSSCC------CSHHHHHHEEEEEEEEECCC
T ss_pred CCcHH------HHHHHHHHHhcCCEEEEEcc
Confidence 43221 24567789999999887643
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.17 E-value=2.9 Score=36.68 Aligned_cols=71 Identities=14% Similarity=0.141 Sum_probs=52.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
..+||=.|+ |.++..+++.+ |.+|++++.++........ .+++++.+|+.++. -..+|+|+....
T Consensus 5 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~--------~~~~~~~~D~~d~~--~~~~d~vi~~a~ 72 (286)
T 3ius_A 5 TGTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA--------SGAEPLLWPGEEPS--LDGVTHLLISTA 72 (286)
T ss_dssp CCEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH--------TTEEEEESSSSCCC--CTTCCEEEECCC
T ss_pred cCcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh--------CCCeEEEecccccc--cCCCCEEEECCC
Confidence 368999994 88888887766 7899999998765433221 36899999998866 467899987665
Q ss_pred cCCCCC
Q 016921 236 GEHMPD 241 (380)
Q Consensus 236 l~~~~~ 241 (380)
.....+
T Consensus 73 ~~~~~~ 78 (286)
T 3ius_A 73 PDSGGD 78 (286)
T ss_dssp CBTTBC
T ss_pred cccccc
Confidence 544333
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.06 E-value=0.13 Score=48.01 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+||=+|+| .|..+..++...|++|+++|.+++.++.+++.... .+.....+..++.-.-..+|+|+..-..
T Consensus 166 ~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~DvVI~~~~~ 240 (361)
T 1pjc_A 166 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS-----RVELLYSNSAEIETAVAEADLLIGAVLV 240 (361)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG-----GSEEEECCHHHHHHHHHTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCc-----eeEeeeCCHHHHHHHHcCCCEEEECCCc
Confidence 35899999986 45555666666688999999999888777654421 2222222211110001258999865443
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+.-+.++..+.++|||.++...
T Consensus 241 ~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 241 PGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp TTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred CCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 321111112345677899999776643
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.00 E-value=1.1 Score=36.78 Aligned_cols=92 Identities=21% Similarity=0.235 Sum_probs=55.3
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----C-CCCCccEEE
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----F-PDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~-~~~~fD~V~ 231 (380)
+.+|+=+|+|. |......+... +..|+++|.+++.++.+++ . .+.++.+|..+.. . .-..+|+|+
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----~----g~~~~~gd~~~~~~l~~~~~~~~ad~vi 110 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRS----E----GRNVISGDATDPDFWERILDTGHVKLVL 110 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----T----TCCEEECCTTCHHHHHTBCSCCCCCEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----C----CCCEEEcCCCCHHHHHhccCCCCCCEEE
Confidence 56899998863 44333333344 7889999999987766543 2 3556777765421 1 234689888
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
... ++. ...+-...+.+.|++.+++..
T Consensus 111 ~~~-----~~~~~~~~~~~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 111 LAM-----PHHQGNQTALEQLQRRNYKGQIAAIA 139 (183)
T ss_dssp ECC-----SSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred EeC-----CChHHHHHHHHHHHHHCCCCEEEEEE
Confidence 642 222 223334556667777777643
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=90.92 E-value=1.6 Score=39.63 Aligned_cols=79 Identities=15% Similarity=0.091 Sum_probs=56.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|++ |.++..+++.+ |.+|++++.++..++.+.+.+...+...++.++.+|+.+.. + ..+
T Consensus 8 ~k~vlVTGas-~gIG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 86 (319)
T 3ioy_A 8 GRTAFVTGGA-NGVGIGLVRQLLNQGCKVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARFG 86 (319)
T ss_dssp TCEEEEETTT-STHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEcCCc-hHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhCC
Confidence 6788888865 44555555554 89999999999888877776665553347899999998742 0 114
Q ss_pred CccEEEeccccCC
Q 016921 226 QFDLVWSMESGEH 238 (380)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (380)
.+|+++.+..+..
T Consensus 87 ~id~lv~nAg~~~ 99 (319)
T 3ioy_A 87 PVSILCNNAGVNL 99 (319)
T ss_dssp CEEEEEECCCCCC
T ss_pred CCCEEEECCCcCC
Confidence 7899998766543
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=90.89 E-value=0.28 Score=45.08 Aligned_cols=69 Identities=12% Similarity=0.149 Sum_probs=51.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFG---AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~---~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
..+++|+-||.|.+...+.+. | ..|.++|+++...+.-+.+. +...+...|+.++. ++...+|+++.
T Consensus 3 ~~~~idLFaG~GG~~~G~~~a-G~~~~~v~a~e~d~~a~~ty~~N~------~~~~~~~~DI~~~~~~~~~~~~~D~l~g 75 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKES-GLDGEIVAAVDINTVANSVYKHNF------PETNLLNRNIQQLTPQVIKKWNVDTILM 75 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECCCGGGCCHHHHHHTTCCEEEE
T ss_pred CCEEEEECcCccHHHHHHHHc-CCCceEEEEEeCCHHHHHHHHHhC------CCCceeccccccCCHHHhccCCCCEEEe
Confidence 458999999999999998876 5 35789999999887777655 23456778888763 22236899986
Q ss_pred cc
Q 016921 233 ME 234 (380)
Q Consensus 233 ~~ 234 (380)
..
T Consensus 76 gp 77 (333)
T 4h0n_A 76 SP 77 (333)
T ss_dssp CC
T ss_pred cC
Confidence 43
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=90.63 E-value=0.064 Score=48.52 Aligned_cols=91 Identities=19% Similarity=0.211 Sum_probs=60.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~~~~~~~~fD~V~~~~ 234 (380)
++.+||-+|+ |.|..+..+++..|++|+++|.+++.++.+++ .|. . .++..+- .++.-.-+.+|+|+. .
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~----~ga--~-~~~~~~~~~~~~~~~~~~d~vid-~ 196 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGA--E-EAATYAEVPERAKAWGGLDLVLE-V 196 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTC--S-EEEEGGGHHHHHHHTTSEEEEEE-C
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----cCC--C-EEEECCcchhHHHHhcCceEEEE-C
Confidence 4899999997 46778888888778999999999887777654 232 1 1222110 111000056999886 3
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.- ..++.+.+.|+++|++++..
T Consensus 197 g~-------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 197 RG-------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp SC-------TTHHHHHTTEEEEEEEEEC-
T ss_pred CH-------HHHHHHHHhhccCCEEEEEe
Confidence 22 25788899999999988754
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=90.52 E-value=1 Score=42.93 Aligned_cols=96 Identities=16% Similarity=0.105 Sum_probs=63.0
Q ss_pred CCCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------------
Q 016921 157 KRPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-------------- 220 (380)
Q Consensus 157 ~~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-------------- 220 (380)
.++.+||=+|+ | .|..+..+++..|+++++++.+++.++.+++ .|...-+.....|..+.
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~----lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 294 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRA----LGCDLVINRAELGITDDIADDPRRVVETGRK 294 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTCCCEEEHHHHTCCTTGGGCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh----cCCCEEEecccccccccccccccccchhhhH
Confidence 45899999996 3 5778888888779999999999988887754 33211111111111000
Q ss_pred ------CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 ------PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ------~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
......+|+|+-... ...++.+.+.|++||.+++..
T Consensus 295 ~~~~v~~~~g~g~Dvvid~~G-------~~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 295 LAKLVVEKAGREPDIVFEHTG-------RVTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHSSCCSEEEECSC-------HHHHHHHHHHSCTTCEEEESC
T ss_pred HHHHHHHHhCCCceEEEECCC-------chHHHHHHHHHhcCCEEEEEe
Confidence 000246898875432 136788899999999998865
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.50 E-value=0.29 Score=44.65 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=60.2
Q ss_pred CC-EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC-CC-C-CCCCCCccEEEe
Q 016921 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA-LQ-Q-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~-~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~-~~-~-~~~~~~fD~V~~ 232 (380)
+. +||-+|+ |.|..+..+++..|++|++++.+++.++.+++ .|.. .+ +-..+. .+ . ....+.+|+|+-
T Consensus 149 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~-~~-i~~~~~~~~~~~~~~~~~~d~vid 222 (328)
T 1xa0_A 149 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV----LGAK-EV-LAREDVMAERIRPLDKQRWAAAVD 222 (328)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH----TTCS-EE-EECC---------CCSCCEEEEEE
T ss_pred CCceEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----cCCc-EE-EecCCcHHHHHHHhcCCcccEEEE
Confidence 54 8999997 46888888888778999999999877777654 3321 11 111111 01 0 122346998875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.-.- ..+..+.+.|++||++++...
T Consensus 223 ~~g~-------~~~~~~~~~l~~~G~~v~~G~ 247 (328)
T 1xa0_A 223 PVGG-------RTLATVLSRMRYGGAVAVSGL 247 (328)
T ss_dssp CSTT-------TTHHHHHHTEEEEEEEEECSC
T ss_pred CCcH-------HHHHHHHHhhccCCEEEEEee
Confidence 4321 247788899999999987643
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.37 E-value=1.9 Score=37.71 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=63.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----DG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|++++.++...+...+.+.......++.++.+|+.+.. +. -+
T Consensus 7 ~k~vlVTGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 7 GKVALVTGA-AQGIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 567887775 555666665554 89999999998766554444422111236888999987641 00 13
Q ss_pred CccEEEeccccCCCCCHHH-----------HHHHHHHhcCC-----CcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSK-----------FVSELARVTAP-----AGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~-----------~l~~~~r~Lkp-----gG~l~~~~ 263 (380)
.+|+++.+.......++.. ..+.+.+.++. +|.++...
T Consensus 86 ~id~lv~~Ag~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~iv~is 139 (267)
T 2gdz_A 86 RLDILVNNAGVNNEKNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMS 139 (267)
T ss_dssp CCCEEEECCCCCCSSSHHHHHHHHTHHHHHHHHHHHHHHCGGGTCCCEEEEEEC
T ss_pred CCCEEEECCCCCChhhHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeC
Confidence 6899988776554444433 23445555543 57776654
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=90.28 E-value=2.6 Score=37.61 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=66.5
Q ss_pred CCEEEEECCCcC-hHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG-~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+.+||=.|++.| .++..+++.+ |++|+.++.++...+.+++.....+ ++.++.+|+.+.. + .-
T Consensus 31 gk~~lVTGasg~~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (293)
T 3grk_A 31 GKRGLILGVANNRSIAWGIAKAAREAGAELAFTYQGDALKKRVEPLAEELG---AFVAGHCDVADAASIDAVFETLEKKW 107 (293)
T ss_dssp TCEEEEECCCSSSSHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHHHT---CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC---CceEEECCCCCHHHHHHHHHHHHHhc
Confidence 778998887643 2444444433 8999999999766555555544433 5889999998742 0 11
Q ss_pred CCccEEEeccccCC-------C--CC---H-----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEH-------M--PD---K-----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~--~~---~-----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+|+++.+..+.. + .+ + -.+++.+.+.++.+|.++....
T Consensus 108 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~isS 170 (293)
T 3grk_A 108 GKLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLTY 170 (293)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred CCCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEee
Confidence 47899997765542 1 01 1 1255667778888888887653
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.16 E-value=0.13 Score=48.17 Aligned_cols=101 Identities=16% Similarity=0.164 Sum_probs=57.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+=+|+| .|..+..++...|++|+++|.++..++.+++.. +. .+.....+..++.-.-...|+|+..-..
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~---g~--~~~~~~~~~~~l~~~l~~aDvVi~~~~~ 241 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEF---CG--RIHTRYSSAYELEGAVKRADLVIGAVLV 241 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SSEEEECCHHHHHHHHHHCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhc---CC--eeEeccCCHHHHHHHHcCCCEEEECCCc
Confidence 47899999986 355555555556889999999998777665432 21 2222211111110001357988864322
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+.-+.++..+.+||||.++..-
T Consensus 242 p~~~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 242 PGAKAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TTSCCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CCCCCcceecHHHHhcCCCCcEEEEEe
Confidence 211111112456778899999877654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=1.3 Score=42.91 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=57.2
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+=+|+| .|......++.+|++|+++|.++...+.+++ .| ..+ .+..+. -...|+|+..-.-
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~----~G----a~~--~~l~e~---l~~aDvVi~atgt 339 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMM----EG----FDV--VTVEEA---IGDADIVVTATGN 339 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CEE--CCHHHH---GGGCSEEEECSSS
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CEE--ecHHHH---HhCCCEEEECCCC
Confidence 48999999987 3555555555568999999999987766543 23 222 222221 1357999876433
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++-+ .+..+.+|+||+++...
T Consensus 340 ~~~i~-----~~~l~~mk~ggilvnvG 361 (494)
T 3ce6_A 340 KDIIM-----LEHIKAMKDHAILGNIG 361 (494)
T ss_dssp SCSBC-----HHHHHHSCTTCEEEECS
T ss_pred HHHHH-----HHHHHhcCCCcEEEEeC
Confidence 33222 35677899999987754
|
| >4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A* | Back alignment and structure |
|---|
Probab=89.57 E-value=1.5 Score=41.48 Aligned_cols=45 Identities=20% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
..+|+|+|.|+|.++..+.+.+ ..+++.||+|+...+.-++++..
T Consensus 138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 188 (432)
T 4f3n_A 138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGA 188 (432)
T ss_dssp CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHH
T ss_pred CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhc
Confidence 4689999999999998887654 24799999999988777777654
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.52 E-value=0.53 Score=42.44 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=51.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCE---EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CC-CCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAK---CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FP-DGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~---v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~-~~~fD~V 230 (380)
.+.+++|+=||.|.+...+.+. |.+ |.++|+++...+.-+.+. +...+..+|+.++. ++ ...+|++
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~------~~~~~~~~DI~~i~~~~i~~~~~~Dll 87 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH------QGKIMYVGDVRSVTQKHIQEWGPFDLV 87 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT------TTCEEEECCGGGCCHHHHHHTCCCSEE
T ss_pred CCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC------CCCceeCCChHHccHHHhcccCCcCEE
Confidence 4779999999999999988776 543 589999998877666543 24567889998863 11 1468999
Q ss_pred Eec
Q 016921 231 WSM 233 (380)
Q Consensus 231 ~~~ 233 (380)
+..
T Consensus 88 ~gg 90 (295)
T 2qrv_A 88 IGG 90 (295)
T ss_dssp EEC
T ss_pred Eec
Confidence 864
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.35 E-value=1.9 Score=37.64 Aligned_cols=105 Identities=14% Similarity=0.151 Sum_probs=66.1
Q ss_pred CCEEEEECCCcC-hHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIG-GSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG-~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.|++.| .++..+++.+ |++|+.++.+....+...+.....+. .++.++.+|+.+.. +. .
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTLDR-NDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTSSS-CCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhcCC-CCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 678888887632 2444444433 89999999887655555555544332 37899999998752 00 1
Q ss_pred CCccEEEeccccCC-------C--CCH---H-----------HHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEH-------M--PDK---S-----------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~-------~--~~~---~-----------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+|+++.+..+.. + .+. . .+++.+...++++|.++....
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~isS 148 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLTY 148 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEec
Confidence 46898887665433 1 111 1 245667777888888887653
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.08 E-value=3.7 Score=36.10 Aligned_cols=102 Identities=19% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (380)
+.+||=.|++ |.++..+++.+ |++|+.+|.+ ...++.+...+...+ .++.++.+|+.+..
T Consensus 10 gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 86 (287)
T 3pxx_A 10 DKVVLVTGGA-RGQGRSHAVKLAEEGADIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG--RKAYTAEVDVRDRAAV 86 (287)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT--SCEEEEECCTTCHHHH
T ss_pred CCEEEEeCCC-ChHHHHHHHHHHHCCCeEEEEcccccccccccchhhhHHHHHHHHHHHhcC--CceEEEEccCCCHHHH
Confidence 6778877765 45555555554 8999999987 666666666555544 57899999988742
Q ss_pred ---CC-----CCCccEEEeccccCCCC------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 222 ---FP-----DGQFDLVWSMESGEHMP------DKS-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 ---~~-----~~~fD~V~~~~~l~~~~------~~~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+. -+.+|+++.+..+.... ++. .+++.+...++.+|.++...
T Consensus 87 ~~~~~~~~~~~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 87 SRELANAVAEFGKLDVVVANAGICPLGAHLPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCCCCCTTCCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHHHcCCCCEEEECCCcCcccCcCCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 00 14789998776553321 122 24456677777888877764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=89.01 E-value=5.3 Score=30.48 Aligned_cols=90 Identities=18% Similarity=0.111 Sum_probs=52.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
+.+|+=+|+| ..+..+++.+ +.+|+++|.++..++..++. . .+.++.+|..+.. ..-..+|+|+
T Consensus 4 ~m~i~IiG~G--~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~---~----~~~~~~~d~~~~~~l~~~~~~~~d~vi 74 (140)
T 1lss_A 4 GMYIIIAGIG--RVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE---I----DALVINGDCTKIKTLEDAGIEDADMYI 74 (140)
T ss_dssp -CEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH---C----SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred CCEEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHh---c----CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence 5689888874 5555554433 78999999998876544321 1 3556777765421 1124689888
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
..... ......+..+.+.+.++ .+++
T Consensus 75 ~~~~~---~~~~~~~~~~~~~~~~~-~ii~ 100 (140)
T 1lss_A 75 AVTGK---EEVNLMSSLLAKSYGIN-KTIA 100 (140)
T ss_dssp ECCSC---HHHHHHHHHHHHHTTCC-CEEE
T ss_pred EeeCC---chHHHHHHHHHHHcCCC-EEEE
Confidence 75321 12233455566667775 4444
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.95 E-value=0.57 Score=44.13 Aligned_cols=98 Identities=14% Similarity=0.220 Sum_probs=59.7
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC------C-------CC--
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL------Q-------QP-- 221 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~------~-------~~-- 221 (380)
++.+|+=+|+| .|..+..++...|++|+++|.++..++.+++ .| ..+...+.. . ++
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----~G----~~~~~~~~~~~~d~~~~~~ya~e~s~~ 260 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQVAS----LG----AKFIAVEDEEFKAAETAGGYAKEMSGE 260 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHHHHH----TT----CEECCCCC-----------------CH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHH----cC----Cceeecccccccccccccchhhhcchh
Confidence 47899999999 4777777777779999999999987776654 22 222222110 0 00
Q ss_pred --------CC--CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 222 --------FP--DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 222 --------~~--~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+. -...|+|+..-.+..-..+.-+-+++.+.+|||..++-.-
T Consensus 261 ~~~~~~~~l~e~l~~aDVVI~tvlipg~~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 261 YQVKQAALVAEHIAKQDIVITTALIPGRPAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp HHHHHHHHHHHHHHTCSEEEECCCCSSSCCCCCBCHHHHTTSCTTCEEEETT
T ss_pred hhhhhHhHHHHHhcCCCEEEECCcCCCCCCCEEecHHHHhcCCCCCEEEEEe
Confidence 00 0357988864322211112223368889999998776543
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.91 E-value=0.2 Score=46.72 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=55.6
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
++.+|+=+|+| .|..+..++...|++|+++|.++..++.+++.. +. .+.....+..++.-.-..+|+|+..-..
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~---g~--~~~~~~~~~~~l~~~~~~~DvVi~~~g~ 239 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVF---GG--RVITLTATEANIKKSVQHADLLIGAVLV 239 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT---TT--SEEEEECCHHHHHHHHHHCSEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhc---Cc--eEEEecCCHHHHHHHHhCCCEEEECCCC
Confidence 46899999985 344444445445899999999998776654322 21 2222222211111001357988765433
Q ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.....+.-+.+++.+.+|+||.++...
T Consensus 240 ~~~~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 240 PGAKAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp ------CCSCHHHHTTSCTTCEEEECC
T ss_pred CccccchhHHHHHHHhhcCCCEEEEEe
Confidence 211111113467788899999877653
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.81 E-value=0.28 Score=44.82 Aligned_cols=92 Identities=17% Similarity=0.159 Sum_probs=61.4
Q ss_pred CC-EEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CC--CCC-CCCCCCccEEE
Q 016921 159 PK-NVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DA--LQQ-PFPDGQFDLVW 231 (380)
Q Consensus 159 ~~-~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~--~~~-~~~~~~fD~V~ 231 (380)
+. +||-+|+ |.|..+..+++..|++|++++.+++.++.+++ .|.. .++.. +. ... ....+.+|+|+
T Consensus 150 g~~~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~~~~d~vi 222 (330)
T 1tt7_A 150 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQ----LGAS---EVISREDVYDGTLKALSKQQWQGAV 222 (330)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHH----HTCS---EEEEHHHHCSSCCCSSCCCCEEEEE
T ss_pred CCceEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCCc---EEEECCCchHHHHHHhhcCCccEEE
Confidence 54 8999997 46788888888778999999999877777754 2321 11211 11 111 12234699887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-... . ..+..+.+.|++||++++...
T Consensus 223 d~~g-----~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 223 DPVG-----G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp ESCC-----T--HHHHHHHTTEEEEEEEEECCC
T ss_pred ECCc-----H--HHHHHHHHhhcCCCEEEEEec
Confidence 5432 2 368889999999999988653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=88.73 E-value=0.17 Score=47.25 Aligned_cols=97 Identities=20% Similarity=0.255 Sum_probs=59.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--C----------------
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--L---------------- 218 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~---------------- 218 (380)
++.+|+=+|+| .|..+..++...|++|+++|.++..++.+++ .| ..|...+. .
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~----lG----a~~~~l~~~~~~~~gya~~~~~~~~~~ 254 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAEQVRS----VG----AQWLDLGIDAAGEGGYARELSEAERAQ 254 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHH----TT----CEECCCC-------------CHHHHHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cC----CeEEeccccccccccchhhhhHHHHhh
Confidence 47899999998 4667777777679999999999987776654 22 23322110 0
Q ss_pred ---CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 219 ---QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 219 ---~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.+.-.-...|+|+..-.+..-..+.-+-+++.+.+|||+.++-.
T Consensus 255 ~~~~l~e~l~~aDIVI~tv~iPg~~ap~Lvt~emv~~MkpGsVIVDv 301 (381)
T 3p2y_A 255 QQQALEDAITKFDIVITTALVPGRPAPRLVTAAAATGMQPGSVVVDL 301 (381)
T ss_dssp HHHHHHHHHTTCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEET
T ss_pred hHHHHHHHHhcCCEEEECCCCCCcccceeecHHHHhcCCCCcEEEEE
Confidence 00000156899986432211111111336888999998876654
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.36 E-value=1.7 Score=37.87 Aligned_cols=103 Identities=13% Similarity=0.031 Sum_probs=65.4
Q ss_pred CCCEEEEECCC-cChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (380)
++.+||=.|++ +|.++..+++.+ |++|+.++.+....+..++.....+ ++.++.+|+.+.. + .
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~~~~~v~~~~~~~~~~ 89 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGAELAFTYVGDRFKDRITEFAAEFG---SELVFPCDVADDAQIDALFASLKTH 89 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHTT---CCCEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCCCEEEEecchhhHHHHHHHHHHcC---CcEEEECCCCCHHHHHHHHHHHHHH
Confidence 47889988874 355666666554 8999999988655555554444433 4788999988742 0 1
Q ss_pred CCCccEEEeccccCCC----------CCH---H-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEHM----------PDK---S-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~----------~~~---~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
-+..|+++.+..+... .+. . .+++.+.+.++++|.++...
T Consensus 90 ~g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 90 WDSLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp CSCEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred cCCCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 2478999877655331 111 1 24455666677788877765
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=3.8 Score=36.38 Aligned_cols=102 Identities=18% Similarity=0.174 Sum_probs=64.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHH-HHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPV-QAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~-~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+.+||=.|++ |.++..+++.+ |++|+.++.+.. ..+...+.....+ .++.++.+|+.+.. + .-
T Consensus 47 gk~vlVTGas-~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 123 (291)
T 3ijr_A 47 GKNVLITGGD-SGIGRAVSIAFAKEGANIAIAYLDEEGDANETKQYVEKEG--VKCVLLPGDLSDEQHCKDIVQETVRQL 123 (291)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHTTT--CCEEEEESCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888855 45555555554 899999998765 3344444444333 57899999998742 0 01
Q ss_pred CCccEEEeccccCCC-C-----C---HH-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHM-P-----D---KS-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~-~-----~---~~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+++.+....+. . + +. .+++.+.+.++.+|.++...
T Consensus 124 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 124 GSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 468999876544321 1 1 11 35566777788889877764
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.17 E-value=2.9 Score=35.57 Aligned_cols=75 Identities=16% Similarity=0.143 Sum_probs=50.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCe-EEEEcCCCC-CCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKV-SFQVGDALQ-QPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v-~~~~~d~~~-~~~~~~~fD~V~~~ 233 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++..++.... .++ .++.+|+.+ +.-.-+.+|+|+..
T Consensus 21 ~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ 91 (236)
T 3e8x_A 21 GMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE--------RGASDIVVANLEEDFSHAFASIDAVVFA 91 (236)
T ss_dssp CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH--------TTCSEEEECCTTSCCGGGGTTCSEEEEC
T ss_pred CCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh--------CCCceEEEcccHHHHHHHHcCCCEEEEC
Confidence 77888777 5677777766655 8899999998876543322 257 899999862 11112468999987
Q ss_pred cccCCCCCH
Q 016921 234 ESGEHMPDK 242 (380)
Q Consensus 234 ~~l~~~~~~ 242 (380)
.......++
T Consensus 92 ag~~~~~~~ 100 (236)
T 3e8x_A 92 AGSGPHTGA 100 (236)
T ss_dssp CCCCTTSCH
T ss_pred CCCCCCCCc
Confidence 665544443
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=87.88 E-value=1.9 Score=40.75 Aligned_cols=90 Identities=16% Similarity=0.157 Sum_probs=61.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVW 231 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~ 231 (380)
..+|+=+|+| .++..+++.+ +..|+++|.+++.++.+++ . .+.++.+|+.+.. ..-...|+|+
T Consensus 4 ~~~viIiG~G--r~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----~----g~~vi~GDat~~~~L~~agi~~A~~vi 73 (413)
T 3l9w_A 4 GMRVIIAGFG--RFGQITGRLLLSSGVKMVVLDHDPDHIETLRK----F----GMKVFYGDATRMDLLESAGAAKAEVLI 73 (413)
T ss_dssp CCSEEEECCS--HHHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----T----TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred CCeEEEECCC--HHHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----C----CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence 5678888885 3444444433 8899999999999887764 2 3667899988742 2235688887
Q ss_pred eccccCCCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.. ++. ...+-...+.+.|...+++-.
T Consensus 74 v~~-----~~~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 74 NAI-----DDPQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ECC-----SSHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ECC-----CChHHHHHHHHHHHHhCCCCeEEEEE
Confidence 643 233 344566777788887777754
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=87.84 E-value=2.2 Score=37.13 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=64.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----------PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------~~~ 225 (380)
+.++|=.|++ |.++..+++.+ |++|+.+|.++..++...+.. + .++.++.+|+.+..- .-+
T Consensus 8 gk~~lVTGas-~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~---~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 81 (255)
T 4eso_A 8 GKKAIVIGGT-HGMGLATVRRLVEGGAEVLLTGRNESNIARIREEF---G--PRVHALRSDIADLNEIAVLGAAAGQTLG 81 (255)
T ss_dssp TCEEEEETCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---G--GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---C--CcceEEEccCCCHHHHHHHHHHHHHHhC
Confidence 6788888855 45555555554 899999999988776655544 2 468899999887420 014
Q ss_pred CccEEEeccccCCCC-----CH---H-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMP-----DK---S-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~-----~~---~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+|+++.+..+.... +. . .+.+.+...++.+|.++...
T Consensus 82 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 82 AIDLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp SEEEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 789988776554321 11 1 24455666677788877764
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=87.69 E-value=5.7 Score=34.81 Aligned_cols=103 Identities=17% Similarity=0.149 Sum_probs=65.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+.++|=.|++ |.++..+++.+ |++|+.++.. ....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 31 gk~~lVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 107 (271)
T 3v2g_A 31 GKTAFVTGGS-RGIGAAIAKRLALEGAAVALTYVNAAERAQAVVSEIEQAG--GRAVAIRADNRDAEAIEQAIRETVEAL 107 (271)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcC--CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 6788888865 45555555544 8899998654 455555555555444 47889999988742 0 01
Q ss_pred CCccEEEeccccCCCC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~-----~---~~-----------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+..|+++.+..+.... + +. .+++.+.+.++++|.++...-
T Consensus 108 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS 166 (271)
T 3v2g_A 108 GGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS 166 (271)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3789998776554321 1 11 356677788888898887653
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.30 E-value=4.1 Score=36.23 Aligned_cols=103 Identities=20% Similarity=0.253 Sum_probs=65.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC--HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS--PVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----P 223 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s--~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~ 223 (380)
+.+||=.|++ |.++..+++.+ |++|+.+|.+ ....+...+.....+ .++.++.+|+.+.. + .
T Consensus 49 ~k~vlVTGas-~GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~d~~~v~~~~~~~~~~ 125 (294)
T 3r3s_A 49 DRKALVTGGD-SGIGRAAAIAYAREGADVAINYLPAEEEDAQQVKALIEECG--RKAVLLPGDLSDESFARSLVHKAREA 125 (294)
T ss_dssp TCEEEEETTT-SHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHHHHHHTT--CCEEECCCCTTSHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCC-cHHHHHHHHHHHHCCCEEEEEeCCcchhHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHH
Confidence 6778888854 55666666554 8999999986 344555555554444 47889999987742 0 0
Q ss_pred CCCccEEEeccccCC-CC-----CH---H-----------HHHHHHHHhcCCCcEEEEEec
Q 016921 224 DGQFDLVWSMESGEH-MP-----DK---S-----------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~-~~-----~~---~-----------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-+..|+++.+..... .. +. . .+++.+...++.+|.++...-
T Consensus 126 ~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~isS 186 (294)
T 3r3s_A 126 LGGLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTSS 186 (294)
T ss_dssp HTCCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEECC
T ss_pred cCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEECC
Confidence 147899987766533 11 11 1 345666777888898887653
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.17 E-value=0.3 Score=45.57 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=59.1
Q ss_pred CCCCEEEEEC-CC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEE
Q 016921 157 KRPKNVVDVG-CG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVW 231 (380)
Q Consensus 157 ~~~~~vLDiG-cG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~ 231 (380)
.++.+||=+| +| .|..+..+++..|++|++++ ++..++.+++ .|.. .++..+-.+.. .....+|+|+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa~---~v~~~~~~~~~~~~~~~~g~D~vi 253 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDASELVRK----LGAD---DVIDYKSGSVEEQLKSLKPFDFIL 253 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTCS---EEEETTSSCHHHHHHTSCCBSEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHHHHHHH----cCCC---EEEECCchHHHHHHhhcCCCCEEE
Confidence 4589999999 34 68888888887789999998 6665555532 3421 12221111110 0124699887
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-.-. .....+....+.|++||++++..
T Consensus 254 d~~g-----~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 254 DNVG-----GSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp ESSC-----TTHHHHGGGGBCSSSCCEEEESC
T ss_pred ECCC-----ChhhhhHHHHHhhcCCcEEEEeC
Confidence 5432 22235677888999999988754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=86.81 E-value=2 Score=38.43 Aligned_cols=103 Identities=20% Similarity=0.169 Sum_probs=65.3
Q ss_pred CCEEEEECCCc-ChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGI-GGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGt-G~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.|++. +.++..+++.+ |++|+.+|.++...+...+.....+ ++.++.+|+.+.. +. -
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dv~d~~~v~~~~~~~~~~~ 106 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGAEVALTYLSETFKKRVDPLAESLG---VKLTVPCDVSDAESVDNMFKVLAEEW 106 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHHT---CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC---CeEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 67889888753 34455554444 8999999999765555555444433 4688999988742 00 1
Q ss_pred CCccEEEeccccCCC---------CC---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEHM---------PD---KS-----------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~---------~~---~~-----------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+|+++.+..+... .+ +. .+.+.+...++.+|.++....
T Consensus 107 g~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~isS 169 (296)
T 3k31_A 107 GSLDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLSY 169 (296)
T ss_dssp SCCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEEC
T ss_pred CCCCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEEe
Confidence 478999987655421 11 11 245566667778888887653
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.79 E-value=4.2 Score=35.60 Aligned_cols=78 Identities=12% Similarity=0.010 Sum_probs=56.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++.+|=-|++. ..+..+++.+ |++|+.+|.+++.++.+.+.+.+.+ .++.++.+|+.+.. -.-+
T Consensus 9 gKvalVTGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 85 (255)
T 4g81_D 9 GKTALVTGSAR-GLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKG--YDAHGVAFDVTDELAIEAAFSKLDAEGI 85 (255)
T ss_dssp TCEEEETTCSS-HHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTT--CCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 66677666554 4555555555 8999999999999888877777665 46888999987731 1236
Q ss_pred CccEEEeccccCCC
Q 016921 226 QFDLVWSMESGEHM 239 (380)
Q Consensus 226 ~fD~V~~~~~l~~~ 239 (380)
..|+++.+-.+.+.
T Consensus 86 ~iDiLVNNAG~~~~ 99 (255)
T 4g81_D 86 HVDILINNAGIQYR 99 (255)
T ss_dssp CCCEEEECCCCCCC
T ss_pred CCcEEEECCCCCCC
Confidence 79999987665543
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=86.55 E-value=6.6 Score=34.93 Aligned_cols=76 Identities=20% Similarity=0.181 Sum_probs=51.6
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (380)
+.++|=.|++. .++..+++.+ |++|+++|.+ ++.++...+.+...+ .++.++.+|+.+..
T Consensus 28 gk~~lVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v 104 (299)
T 3t7c_A 28 GKVAFITGAAR-GQGRSHAITLAREGADIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALG--RRIIASQVDVRDFDAM 104 (299)
T ss_dssp TCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHH
T ss_pred CCEEEEECCCC-HHHHHHHHHHHHCCCEEEEEecccccccccccccCHHHHHHHHHHHHhcC--CceEEEECCCCCHHHH
Confidence 67788888655 4555555544 8999999987 666666665555544 57899999998742
Q ss_pred ---C-----CCCCccEEEeccccC
Q 016921 222 ---F-----PDGQFDLVWSMESGE 237 (380)
Q Consensus 222 ---~-----~~~~fD~V~~~~~l~ 237 (380)
+ .-+..|+++.+..+.
T Consensus 105 ~~~~~~~~~~~g~iD~lv~nAg~~ 128 (299)
T 3t7c_A 105 QAAVDDGVTQLGRLDIVLANAALA 128 (299)
T ss_dssp HHHHHHHHHHHSCCCEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCEEEECCCCC
Confidence 0 014789988765543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=86.48 E-value=1.9 Score=37.58 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=64.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.| |+|.++..+++.+ |.+|++++.++...+...+.+...+ .++.++.+|+.+.. +. .
T Consensus 4 ~k~vlITG-asggIG~~~a~~L~~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 80 (276)
T 1wma_A 4 IHVALVTG-GNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 80 (276)
T ss_dssp CCEEEESS-CSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHhcCCeEEEEeCChHHHHHHHHHHHhcC--CeeEEEECCCCCHHHHHHHHHHHHHhc
Confidence 56777666 5666666655433 7899999999887766666555443 46889999987742 00 1
Q ss_pred CCccEEEeccccCCCC--------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~--------~~~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+|+.+....... +.. .+++.+.+.++++|+++...
T Consensus 81 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 81 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 3789988765443211 111 24455556666677777754
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=86.43 E-value=2.2 Score=39.49 Aligned_cols=93 Identities=12% Similarity=0.071 Sum_probs=61.1
Q ss_pred CCCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccE
Q 016921 157 KRPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDL 229 (380)
Q Consensus 157 ~~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~ 229 (380)
.++.+||=+|+ | .|..+..+++..|++|+++. ++.-++.+++ .|. -.++...-.++ ...++.+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~~~~----lGa---~~vi~~~~~~~~~~v~~~t~g~~d~ 234 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDLAKS----RGA---EEVFDYRAPNLAQTIRTYTKNNLRY 234 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHHHHH----TTC---SEEEETTSTTHHHHHHHHTTTCCCE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHHHHH----cCC---cEEEECCCchHHHHHHHHccCCccE
Confidence 35899999998 3 78889999988899999885 7776666654 342 12232221111 011245998
Q ss_pred EEeccccCCCCCHHHHHHHHHHhc-CCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVT-APAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~~~~ 263 (380)
|+-.-. . ...++.+.+.| ++||++++..
T Consensus 235 v~d~~g-----~-~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 235 ALDCIT-----N-VESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp EEESSC-----S-HHHHHHHHHHSCTTCEEEEESS
T ss_pred EEECCC-----c-hHHHHHHHHHhhcCCCEEEEEe
Confidence 875322 1 35678888899 6999988764
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.39 E-value=2.9 Score=38.94 Aligned_cols=97 Identities=18% Similarity=0.091 Sum_probs=65.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+.+||.|+.+.|.++..++.. .++.+.-|-......+.++..+++++ ++.+... ... ..+.||+|+... -.
T Consensus 39 ~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~~~-~~~---~~~~~~~v~~~l-pk 110 (375)
T 4dcm_A 39 RGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFLDS-TAD---YPQQPGVVLIKV-PK 110 (375)
T ss_dssp CSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEEET-TSC---CCSSCSEEEEEC-CS
T ss_pred CCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEeccc-ccc---cccCCCEEEEEc-CC
Confidence 568999999999999888753 34555445555556667777777754 3665432 222 246799887632 23
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.......+..+...|+||+.+++..
T Consensus 111 ~~~~l~~~L~~l~~~l~~~~~i~~~g 136 (375)
T 4dcm_A 111 TLALLEQQLRALRKVVTSDTRIIAGA 136 (375)
T ss_dssp CHHHHHHHHHHHHTTCCTTSEEEEEE
T ss_pred CHHHHHHHHHHHHhhCCCCCEEEEEe
Confidence 33345677888999999999988765
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=86.24 E-value=0.38 Score=45.12 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=33.0
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~ 199 (380)
++.+|+=+|+| .|..+..++..+|++|+++|.++.-.+.++.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~ 213 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVES 213 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 48899999998 4666777777778999999999876655543
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=86.21 E-value=5 Score=35.56 Aligned_cols=77 Identities=14% Similarity=0.117 Sum_probs=54.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-C--------C--CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-P--------F--PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~--------~--~~ 224 (380)
+.+||=.|++ |.++..+++.+ |++|++++.++...+.+.+.+...+. .++.++.+|+.+. . + ..
T Consensus 12 ~k~vlITGas-~GIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 12 RRCAVVTGGN-KGIGFEICKQLSSNGIMVVLTCRDVTKGHEAVEKLKNSNH-ENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp CCEEEESSCS-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTC-CSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 5677766654 55666666555 89999999999887777666655432 4799999999875 2 0 01
Q ss_pred CCccEEEeccccC
Q 016921 225 GQFDLVWSMESGE 237 (380)
Q Consensus 225 ~~fD~V~~~~~l~ 237 (380)
+.+|+++.+..+.
T Consensus 90 g~iD~lv~nAg~~ 102 (311)
T 3o26_A 90 GKLDILVNNAGVA 102 (311)
T ss_dssp SSCCEEEECCCCC
T ss_pred CCCCEEEECCccc
Confidence 4799999876654
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=85.45 E-value=5 Score=35.15 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=53.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC------------HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS------------PVQAQRANALAAARGLADKVSFQVGDALQQP-- 221 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s------------~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-- 221 (380)
+.+||=.|++ |.++..+++.+ |++|+++|.+ ++.++...+.....+ .++.++.+|+.+..
T Consensus 13 gk~vlVTGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v 89 (278)
T 3sx2_A 13 GKVAFITGAA-RGQGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKLVEDIG--SRIVARQADVRDRESL 89 (278)
T ss_dssp TCEEEEESTT-SHHHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHT--CCEEEEECCTTCHHHH
T ss_pred CCEEEEECCC-ChHHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHHHHhcC--CeEEEEeCCCCCHHHH
Confidence 6778877754 55555555554 8999999987 666666555555444 47999999998742
Q ss_pred ---CC-----CCCccEEEeccccCCC
Q 016921 222 ---FP-----DGQFDLVWSMESGEHM 239 (380)
Q Consensus 222 ---~~-----~~~fD~V~~~~~l~~~ 239 (380)
+. -+..|+++.+..+...
T Consensus 90 ~~~~~~~~~~~g~id~lv~nAg~~~~ 115 (278)
T 3sx2_A 90 SAALQAGLDELGRLDIVVANAGIAPM 115 (278)
T ss_dssp HHHHHHHHHHHCCCCEEEECCCCCCC
T ss_pred HHHHHHHHHHcCCCCEEEECCCCCCC
Confidence 10 1478999987666543
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=85.13 E-value=10 Score=33.05 Aligned_cols=103 Identities=22% Similarity=0.184 Sum_probs=66.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeC-CHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITL-SPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~-s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+.++|=.|++ |.++..+++.+ |++|+.++. +....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 18 ~k~~lVTGas-~gIG~aia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 94 (270)
T 3is3_A 18 GKVALVTGSG-RGIGAAVAVHLGRLGAKVVVNYANSTKDAEKVVSEIKALG--SDAIAIKADIRQVPEIVKLFDQAVAHF 94 (270)
T ss_dssp TCEEEESCTT-SHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CcEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 6677777754 55566665554 889998775 4555555555555544 57899999998742 0 01
Q ss_pred CCccEEEeccccCCCC-----C---HH-----------HHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~-----~---~~-----------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+..|+++.+..+.... + +. .+.+.+.+.++++|.+++...
T Consensus 95 g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS 153 (270)
T 3is3_A 95 GHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSS 153 (270)
T ss_dssp SCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 4689998766554331 1 11 255677888888998887654
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=85.02 E-value=0.33 Score=45.84 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=32.9
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHH
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRAN 198 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~ 198 (380)
++.+|+=+|+| .|..+..++..+|++|+++|.++..++.++
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~ 212 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQ 212 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 47899999998 466677777777899999999987766653
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=84.89 E-value=4.3 Score=35.52 Aligned_cols=75 Identities=20% Similarity=0.180 Sum_probs=55.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++.+|=-|++.| ++..+++.+ |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -.-+
T Consensus 7 gKvalVTGas~G-IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~i~~~g--~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 83 (254)
T 4fn4_A 7 NKVVIVTGAGSG-IGRAIAKKFALNDSIVVAVELLEDRLNQIVQELRGMG--KEVLGVKADVSKKKDVEEFVRRTFETYS 83 (254)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 677887786655 455555444 8999999999999988888777665 47899999998742 0125
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|+++.+-.+
T Consensus 84 ~iDiLVNNAGi 94 (254)
T 4fn4_A 84 RIDVLCNNAGI 94 (254)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78998876654
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=84.76 E-value=6.4 Score=31.00 Aligned_cols=94 Identities=10% Similarity=0.072 Sum_probs=57.4
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V 230 (380)
..+|+=+|+ |..+..+++.+ +..|+++|.+ ++..+...... +..+.++.+|..+.. ..-+..|+|
T Consensus 3 ~~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~v 75 (153)
T 1id1_A 3 KDHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAI 75 (153)
T ss_dssp CSCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEE
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEE
Confidence 456887876 56666665544 7899999997 44443333221 135788999987631 112468888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
++...- ......+....+.+.|...++..
T Consensus 76 i~~~~~---d~~n~~~~~~a~~~~~~~~ii~~ 104 (153)
T 1id1_A 76 LALSDN---DADNAFVVLSAKDMSSDVKTVLA 104 (153)
T ss_dssp EECSSC---HHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEecCC---hHHHHHHHHHHHHHCCCCEEEEE
Confidence 865321 12344555667777777777664
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=84.27 E-value=16 Score=32.65 Aligned_cols=79 Identities=18% Similarity=0.096 Sum_probs=51.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE-EcCCCCCC-CC--CCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQ-VGDALQQP-FP--DGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~-~~d~~~~~-~~--~~~fD~V 230 (380)
++.+||=.| |+|.++..+++.+ |.+|++++.++...+.....+.... ..++.++ .+|+.+.. +. -..+|+|
T Consensus 10 ~~~~vlVTG-atG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~d~~~~~~~~~~~d~v 87 (342)
T 1y1p_A 10 EGSLVLVTG-ANGFVASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKY-PGRFETAVVEDMLKQGAYDEVIKGAAGV 87 (342)
T ss_dssp TTCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHS-TTTEEEEECSCTTSTTTTTTTTTTCSEE
T ss_pred CCCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccC-CCceEEEEecCCcChHHHHHHHcCCCEE
Confidence 367888777 5677777776655 7899999998876554444332211 1468888 78987642 11 1368999
Q ss_pred EeccccCC
Q 016921 231 WSMESGEH 238 (380)
Q Consensus 231 ~~~~~l~~ 238 (380)
+.......
T Consensus 88 ih~A~~~~ 95 (342)
T 1y1p_A 88 AHIASVVS 95 (342)
T ss_dssp EECCCCCS
T ss_pred EEeCCCCC
Confidence 87665543
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=84.20 E-value=2.9 Score=33.19 Aligned_cols=93 Identities=22% Similarity=0.223 Sum_probs=51.6
Q ss_pred CCCEEEEECCCcChHHHHHHHH---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKK---FGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~---~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V 230 (380)
++.+|+=+|+| .++..+++. .+..|+++|.++..++.++. ...+.++.+|..+.. ..-..+|+|
T Consensus 18 ~~~~v~IiG~G--~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~-------~~g~~~~~~d~~~~~~l~~~~~~~ad~V 88 (155)
T 2g1u_A 18 KSKYIVIFGCG--RLGSLIANLASSSGHSVVVVDKNEYAFHRLNS-------EFSGFTVVGDAAEFETLKECGMEKADMV 88 (155)
T ss_dssp CCCEEEEECCS--HHHHHHHHHHHHTTCEEEEEESCGGGGGGSCT-------TCCSEEEESCTTSHHHHHTTTGGGCSEE
T ss_pred CCCcEEEECCC--HHHHHHHHHHHhCCCeEEEEECCHHHHHHHHh-------cCCCcEEEecCCCHHHHHHcCcccCCEE
Confidence 47899999985 444443333 37899999999865543220 123556667754421 112468888
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
+....- ......+..+.+.+.+...++..
T Consensus 89 i~~~~~---~~~~~~~~~~~~~~~~~~~iv~~ 117 (155)
T 2g1u_A 89 FAFTND---DSTNFFISMNARYMFNVENVIAR 117 (155)
T ss_dssp EECSSC---HHHHHHHHHHHHHTSCCSEEEEE
T ss_pred EEEeCC---cHHHHHHHHHHHHHCCCCeEEEE
Confidence 765321 12233444455555555555554
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=83.98 E-value=1.6 Score=40.08 Aligned_cols=91 Identities=16% Similarity=0.033 Sum_probs=56.8
Q ss_pred CEEEEE-CCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccEEE
Q 016921 160 KNVVDV-GCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLVW 231 (380)
Q Consensus 160 ~~vLDi-GcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~V~ 231 (380)
.+||=. |+| .|..+..+++..|++|+++|.+++.++.+++ .|. ..++..+-.++. .....+|+|+
T Consensus 166 ~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~----~Ga---~~~~~~~~~~~~~~v~~~~~~~g~D~vi 238 (349)
T 3pi7_A 166 KAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKD----IGA---AHVLNEKAPDFEATLREVMKAEQPRIFL 238 (349)
T ss_dssp SEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHH----HTC---SEEEETTSTTHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH----cCC---CEEEECCcHHHHHHHHHHhcCCCCcEEE
Confidence 466643 443 5667777777779999999999988887764 232 122222211110 0013699888
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-...- ..+..+.+.|++||++++...
T Consensus 239 d~~g~-------~~~~~~~~~l~~~G~iv~~G~ 264 (349)
T 3pi7_A 239 DAVTG-------PLASAIFNAMPKRARWIIYGR 264 (349)
T ss_dssp ESSCH-------HHHHHHHHHSCTTCEEEECCC
T ss_pred ECCCC-------hhHHHHHhhhcCCCEEEEEec
Confidence 54321 235788899999999998653
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=83.97 E-value=0.68 Score=42.28 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=39.9
Q ss_pred CCeEEEEcCCCC-CC-CCCCCccEEEeccccCC-----C---------CCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 208 DKVSFQVGDALQ-QP-FPDGQFDLVWSMESGEH-----M---------PDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 208 ~~v~~~~~d~~~-~~-~~~~~fD~V~~~~~l~~-----~---------~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+..++++|..+ +. +++++||+|++.=-... . ......++++.++|+|||.+++..
T Consensus 13 ~~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~ 84 (323)
T 1boo_A 13 SNGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 84 (323)
T ss_dssp SSEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEE
Confidence 357788999765 32 56789999998521111 1 124678899999999999998864
|
| >1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A | Back alignment and structure |
|---|
Probab=83.91 E-value=0.9 Score=41.98 Aligned_cols=96 Identities=11% Similarity=0.107 Sum_probs=55.8
Q ss_pred CC-CEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC---CCCC-----C---C
Q 016921 158 RP-KNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA---LQQP-----F---P 223 (380)
Q Consensus 158 ~~-~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~---~~~~-----~---~ 223 (380)
++ .+||=+|+ | .|..+..+++..|++++++..+++.+...++.+++.|.. .++..+- .++. . .
T Consensus 166 ~g~~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~~lGa~---~vi~~~~~~~~~~~~~i~~~t~~~ 242 (364)
T 1gu7_A 166 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQS 242 (364)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCcEEEECCCCcHHHHHHHHHHHHCCCEEEEEecCccccHHHHHHHHhcCCe---EEEecCccchHHHHHHHHHHhhcc
Confidence 48 99999986 4 688888888877999888875544311111122233421 1222110 1110 0 1
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+.+|+|+-.-. . .... .+.+.|++||++++..
T Consensus 243 ~~g~Dvvid~~G-----~-~~~~-~~~~~l~~~G~~v~~g 275 (364)
T 1gu7_A 243 GGEAKLALNCVG-----G-KSST-GIARKLNNNGLMLTYG 275 (364)
T ss_dssp TCCEEEEEESSC-----H-HHHH-HHHHTSCTTCEEEECC
T ss_pred CCCceEEEECCC-----c-hhHH-HHHHHhccCCEEEEec
Confidence 246998875422 1 2233 7789999999988864
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=1.5 Score=39.82 Aligned_cols=66 Identities=14% Similarity=0.052 Sum_probs=48.6
Q ss_pred CEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEec
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSM 233 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~ 233 (380)
.+|||+=||.|.+..-+.+. |.+ +.++|+++...+.-+.+. + -.++.+|+.++... -..+|+++..
T Consensus 1 mkvidLFsG~GG~~~G~~~a-G~~~v~a~e~d~~a~~ty~~N~-----~--~~~~~~DI~~i~~~~~~~~D~l~gg 68 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGG 68 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHT-TCEEEEEEECCTTTHHHHHHHC-----C--SEEEESCGGGCCGGGSCCCSEEECC
T ss_pred CeEEEeCcCccHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCcccCChhhCCHhhCCcccEEEec
Confidence 47999999999999988775 554 569999998877766543 1 35688998886421 1368988863
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.81 E-value=11 Score=32.17 Aligned_cols=74 Identities=12% Similarity=0.121 Sum_probs=49.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-CCCCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-PDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-~~~~fD 228 (380)
++.+||=.|+ +|.++..+++.+ |.+|+.++.++..++...+.. ..++.+...|+.+.. + ..+..|
T Consensus 13 ~~k~vlVTGa-s~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~~~~~~~~~~~~~~id 86 (249)
T 3f9i_A 13 TGKTSLITGA-SSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL-----KDNYTIEVCNLANKEECSNLISKTSNLD 86 (249)
T ss_dssp TTCEEEETTT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-----CSSEEEEECCTTSHHHHHHHHHTCSCCS
T ss_pred CCCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh-----ccCccEEEcCCCCHHHHHHHHHhcCCCC
Confidence 4778887665 455666666554 899999999988776655443 246889999987631 1 124689
Q ss_pred EEEeccccC
Q 016921 229 LVWSMESGE 237 (380)
Q Consensus 229 ~V~~~~~l~ 237 (380)
+++.+..+.
T Consensus 87 ~li~~Ag~~ 95 (249)
T 3f9i_A 87 ILVCNAGIT 95 (249)
T ss_dssp EEEECCC--
T ss_pred EEEECCCCC
Confidence 998776543
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=83.38 E-value=2 Score=38.11 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=65.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++.+|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+ + .++.++.+|+.+.. -.-+
T Consensus 29 gKvalVTGas~G-IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~---g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 102 (273)
T 4fgs_A 29 AKIAVITGATSG-IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEI---G--GGAVGIQADSANLAELDRLYEKVKAEAG 102 (273)
T ss_dssp TCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH---C--TTCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCcCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc---C--CCeEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 677787776655 555555554 899999999998877654433 3 46788899987742 0125
Q ss_pred CccEEEeccccCCCC--------CHH-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMP--------DKS-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~--------~~~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|+++.+....... +++ ...+.+.+.|+.+|.++...
T Consensus 103 ~iDiLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 103 RIDVLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp CEEEEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 789988766554331 122 24566777788888877764
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=83.26 E-value=8.5 Score=36.38 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
-.++.+.+..+.. -.+.+|+=+|+|. |......++.+|++|+++|+++.....+.. .| .. ..++.
T Consensus 205 s~~~gi~rat~~~----L~GktV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~----~G----~~--v~~Le 270 (435)
T 3gvp_A 205 SILDGLKRTTDMM----FGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACM----DG----FR--LVKLN 270 (435)
T ss_dssp HHHHHHHHHHCCC----CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TT----CE--ECCHH
T ss_pred HHHHHHHHhhCce----ecCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHH----cC----CE--eccHH
Confidence 3444444444322 2488999999984 555555555569999999999865443332 22 22 22332
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+. -...|+|+....-.++-+ .+..+.+|+|++++-.-
T Consensus 271 ea---l~~ADIVi~atgt~~lI~-----~e~l~~MK~gailINvg 307 (435)
T 3gvp_A 271 EV---IRQVDIVITCTGNKNVVT-----REHLDRMKNSCIVCNMG 307 (435)
T ss_dssp HH---TTTCSEEEECSSCSCSBC-----HHHHHHSCTTEEEEECS
T ss_pred HH---HhcCCEEEECCCCcccCC-----HHHHHhcCCCcEEEEec
Confidence 21 135798888533333322 35678899998776653
|
| >1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A | Back alignment and structure |
|---|
Probab=83.01 E-value=2.5 Score=38.82 Aligned_cols=92 Identities=18% Similarity=0.167 Sum_probs=53.4
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEe-CCHH---HHHHHHHHHHHcCCCCCeEEEEc------CCCCCCCCCC
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGIT-LSPV---QAQRANALAAARGLADKVSFQVG------DALQQPFPDG 225 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD-~s~~---~~~~a~~~~~~~~~~~~v~~~~~------d~~~~~~~~~ 225 (380)
++.+||=+|+ |.|..+..+++..|++++++. .++. ..+.++ +.|.. .++.. ++.+..-..+
T Consensus 167 ~g~~VlV~Ga~G~vG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~~~----~lGa~---~vi~~~~~~~~~~~~~~~~~~ 239 (357)
T 1zsy_A 167 PGDSVIQNASNSGVGQAVIQIAAALGLRTINVVRDRPDIQKLSDRLK----SLGAE---HVITEEELRRPEMKNFFKDMP 239 (357)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEECCCSCHHHHHHHHH----HTTCS---EEEEHHHHHSGGGGGTTSSSC
T ss_pred CCCEEEEeCCcCHHHHHHHHHHHHcCCEEEEEecCccchHHHHHHHH----hcCCc---EEEecCcchHHHHHHHHhCCC
Confidence 4899999996 468888899987788766554 4322 233333 33421 22221 1111110112
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+|+|+-.- .. .....+.+.|++||++++..
T Consensus 240 ~~Dvvid~~-----g~--~~~~~~~~~l~~~G~iv~~G 270 (357)
T 1zsy_A 240 QPRLALNCV-----GG--KSSTELLRQLARGGTMVTYG 270 (357)
T ss_dssp CCSEEEESS-----CH--HHHHHHHTTSCTTCEEEECC
T ss_pred CceEEEECC-----Cc--HHHHHHHHhhCCCCEEEEEe
Confidence 489887432 12 12346789999999988763
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=82.69 E-value=7.6 Score=32.42 Aligned_cols=93 Identities=15% Similarity=0.164 Sum_probs=58.7
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (380)
+||=.| |+|.++..+++.+ |.+|++++.++..+... ...++.++.+|+.+... .-+.+|+|+.....
T Consensus 2 kilVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~--------~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 2 KIAVLG-ATGRAGSAIVAEARRRGHEVLAVVRDPQKAADR--------LGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH--------TCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred EEEEEc-CCCHHHHHHHHHHHHCCCEEEEEEecccccccc--------cCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 566666 5677777776665 88999999998755422 12478999999887531 11468998877655
Q ss_pred CCCCC----HHHHHHHHHHhcCC-CcEEEEE
Q 016921 237 EHMPD----KSKFVSELARVTAP-AGTIIIV 262 (380)
Q Consensus 237 ~~~~~----~~~~l~~~~r~Lkp-gG~l~~~ 262 (380)
.+-+. .......+.+.++. |+++++.
T Consensus 73 ~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 73 PWGSGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp CTTSSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred CCCcchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 32211 23344566666654 4566655
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=82.61 E-value=2.5 Score=36.89 Aligned_cols=102 Identities=19% Similarity=0.158 Sum_probs=63.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.|++. .++..+++.+ |++|+.+ +.+....+...+.+...+ .++.++.+|+.+.. +. -
T Consensus 8 ~k~vlVTGas~-GIG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 84 (259)
T 3edm_A 8 NRTIVVAGAGR-DIGRACAIRFAQEGANVVLTYNGAAEGAATAVAEIEKLG--RSALAIKADLTNAAEVEAAISAAADKF 84 (259)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHHTTT--SCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCc-hHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 67788777654 4555555544 8899988 666666665555554443 46889999988742 00 1
Q ss_pred CCccEEEeccccC-C---CC--CH---H-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGE-H---MP--DK---S-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~-~---~~--~~---~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+++.+.... . +. +. . .+.+.+.+.++++|.++...
T Consensus 85 g~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 85 GEIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp CSEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4789988765433 1 11 11 1 24455666676778877764
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=81.82 E-value=4.5 Score=34.09 Aligned_cols=89 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
+|+=+|+ |.++..+++.+ +..|+++|.+++.++...+. .++.++.+|+.+.. ..-...|+|++.
T Consensus 2 ~iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~-------~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAKK-------LKATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHH-------SSSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHH-------cCCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 4666775 56666666554 78999999999877654321 14678999987631 112468988864
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
..- ......+....+.+.+...++.
T Consensus 73 ~~~---d~~n~~~~~~a~~~~~~~~iia 97 (218)
T 3l4b_C 73 TPR---DEVNLFIAQLVMKDFGVKRVVS 97 (218)
T ss_dssp CSC---HHHHHHHHHHHHHTSCCCEEEE
T ss_pred cCC---cHHHHHHHHHHHHHcCCCeEEE
Confidence 311 1123445556666666666655
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=81.79 E-value=5.5 Score=35.01 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=53.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---------PDGQ 226 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---------~~~~ 226 (380)
+.++|=.|+ +|.++..+++.+ |++|+.+|.++..++...+.+...+ .++.++.+|+.+... ..+.
T Consensus 33 gk~~lVTGa-s~GIG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~g~ 109 (275)
T 4imr_A 33 GRTALVTGS-SRGIGAAIAEGLAGAGAHVILHGVKPGSTAAVQQRIIASG--GTAQELAGDLSEAGAGTDLIERAEAIAP 109 (275)
T ss_dssp TCEEEETTC-SSHHHHHHHHHHHHTTCEEEEEESSTTTTHHHHHHHHHTT--CCEEEEECCTTSTTHHHHHHHHHHHHSC
T ss_pred CCEEEEECC-CCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEecCCCHHHHHHHHHHHHHhCC
Confidence 667776664 456666666555 8999999999877776666665544 578999999987520 0147
Q ss_pred ccEEEeccccC
Q 016921 227 FDLVWSMESGE 237 (380)
Q Consensus 227 fD~V~~~~~l~ 237 (380)
+|+++.+..+.
T Consensus 110 iD~lvnnAg~~ 120 (275)
T 4imr_A 110 VDILVINASAQ 120 (275)
T ss_dssp CCEEEECCCCC
T ss_pred CCEEEECCCCC
Confidence 89998776653
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=81.76 E-value=11 Score=33.38 Aligned_cols=77 Identities=21% Similarity=0.257 Sum_probs=51.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC-CCCeEEEEcCCCCCC-----CC-----C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL-ADKVSFQVGDALQQP-----FP-----D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~-~~~v~~~~~d~~~~~-----~~-----~ 224 (380)
+.+||=.| |+|.++..+++.+ |++|++++.++..++...+.+...+. ..++.++.+|+.+.. +. -
T Consensus 26 ~k~vlVTG-as~gIG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 104 (297)
T 1xhl_A 26 GKSVIITG-SSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 104 (297)
T ss_dssp TCEEEETT-CSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 56677666 5566666666655 89999999998877766555544331 116889999987742 10 1
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+.+|+++.+..+
T Consensus 105 g~iD~lvnnAG~ 116 (297)
T 1xhl_A 105 GKIDILVNNAGA 116 (297)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 368998876654
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=81.53 E-value=5.1 Score=35.06 Aligned_cols=102 Identities=18% Similarity=0.135 Sum_probs=64.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEe-CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGIT-LSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD-~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+.++|=.|++. .++..+++.+ |++|+.++ .+....+...+.+...+ .++.++.+|+.+.. + .-
T Consensus 27 ~k~~lVTGas~-GIG~aia~~la~~G~~Vv~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~ 103 (267)
T 3u5t_A 27 NKVAIVTGASR-GIGAAIAARLASDGFTVVINYAGKAAAAEEVAGKIEAAG--GKALTAQADVSDPAAVRRLFATAEEAF 103 (267)
T ss_dssp CCEEEEESCSS-HHHHHHHHHHHHHTCEEEEEESSCSHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 67788777654 4455554444 88998874 45555555555555444 47889999998742 0 01
Q ss_pred CCccEEEeccccCCCC-----C---HH-----------HHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMP-----D---KS-----------KFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~-----~---~~-----------~~l~~~~r~LkpgG~l~~~~ 263 (380)
+..|+++.+..+.... + ++ .+++.+.+.++++|.++...
T Consensus 104 g~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 104 GGVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp SCEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 4789998776554321 1 11 24566777788888887765
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.15 E-value=7.5 Score=33.36 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=53.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++++ |++|+.+|.++..++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 9 ~k~vlITGa-s~giG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 85 (253)
T 3qiv_A 9 NKVGIVTGS-GGGIGQAYAEALAREGAAVVVADINAEAAEAVAKQIVADG--GTAISVAVDVSDPESAKAMADRTLAEFG 85 (253)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECC-CChHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 677887775 455566666554 8999999999988887777666544 47889999998742 0 013
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
.+|+++.+..+
T Consensus 86 ~id~li~~Ag~ 96 (253)
T 3qiv_A 86 GIDYLVNNAAI 96 (253)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCc
Confidence 78999877654
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=81.05 E-value=13 Score=30.66 Aligned_cols=93 Identities=10% Similarity=0.115 Sum_probs=57.4
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (380)
+||=.| |+|..+..+++.+ |.+|++++.++..+... . .++.++.+|+.+... .-..+|+|+.....
T Consensus 2 kvlVtG-atG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~-------~--~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIG-ATGRAGSRILEEAKNRGHEVTAIVRNAGKITQT-------H--KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp EEEEET-TTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHH-------C--SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred eEEEEc-CCchhHHHHHHHHHhCCCEEEEEEcCchhhhhc-------c--CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 566666 5667676666655 78999999987654321 1 468999999887531 01458998876554
Q ss_pred CCC--CCHHHHHHHHHHhcCCC--cEEEEEe
Q 016921 237 EHM--PDKSKFVSELARVTAPA--GTIIIVT 263 (380)
Q Consensus 237 ~~~--~~~~~~l~~~~r~Lkpg--G~l~~~~ 263 (380)
..- .......+.+.+.++.. +++++..
T Consensus 72 ~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~S 102 (221)
T 3ew7_A 72 SPDEAEKHVTSLDHLISVLNGTVSPRLLVVG 102 (221)
T ss_dssp STTTTTSHHHHHHHHHHHHCSCCSSEEEEEC
T ss_pred CccccchHHHHHHHHHHHHHhcCCceEEEEe
Confidence 321 22334455566666543 5666543
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=80.98 E-value=5.4 Score=35.51 Aligned_cols=88 Identities=17% Similarity=0.063 Sum_probs=51.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~~~~~~fD~V~~~~~ 235 (380)
.+.+|+=||+|. |......+..+|.+|++.|.++...+.+. ..+ +.+.. .+..+. -...|+|+..-.
T Consensus 154 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~----~~g----~~~~~~~~l~~~---l~~aDvVi~~~p 222 (293)
T 3d4o_A 154 HGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIA----EMG----MEPFHISKAAQE---LRDVDVCINTIP 222 (293)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH----HTT----SEEEEGGGHHHH---TTTCSEEEECCS
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHH----HCC----CeecChhhHHHH---hcCCCEEEECCC
Confidence 488999999873 44444444445889999999987544332 222 33321 122111 146899887654
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.+.+ +. +....+|||+.++-.
T Consensus 223 ~~~i-~~-----~~l~~mk~~~~lin~ 243 (293)
T 3d4o_A 223 ALVV-TA-----NVLAEMPSHTFVIDL 243 (293)
T ss_dssp SCCB-CH-----HHHHHSCTTCEEEEC
T ss_pred hHHh-CH-----HHHHhcCCCCEEEEe
Confidence 4332 22 345678999876654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=80.31 E-value=9.8 Score=36.16 Aligned_cols=103 Identities=17% Similarity=0.117 Sum_probs=61.8
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~ 217 (380)
+.+++.+.+..+.. -.+.+|+=+|+|. |......++.+|++|++.|+++.....+. ..| +.+ .++
T Consensus 231 eslvdgI~Ratg~~----L~GKTVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~----~~G----~~v--v~L 296 (464)
T 3n58_A 231 ESLVDGIRRGTDVM----MAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAA----MDG----FEV--VTL 296 (464)
T ss_dssp HHHHHHHHHHHCCC----CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHH----HTT----CEE--CCH
T ss_pred HHHHHHHHHhcCCc----ccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHH----hcC----cee--ccH
Confidence 44555555554432 2489999999984 55555555556999999999986543332 122 222 233
Q ss_pred CCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 218 ~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+. -...|+|+....-.|+- -.+....+|+|++|+-+-
T Consensus 297 eEl---L~~ADIVv~atgt~~lI-----~~e~l~~MK~GAILINvG 334 (464)
T 3n58_A 297 DDA---ASTADIVVTTTGNKDVI-----TIDHMRKMKDMCIVGNIG 334 (464)
T ss_dssp HHH---GGGCSEEEECCSSSSSB-----CHHHHHHSCTTEEEEECS
T ss_pred HHH---HhhCCEEEECCCCcccc-----CHHHHhcCCCCeEEEEcC
Confidence 222 13578888654333332 246778889999887653
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.27 E-value=9.1 Score=33.35 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=53.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~~ 225 (380)
+.+||=.|+ +|.++..+++.+ |.+|+++|.++..++...+.+...+ .++.++.+|+.+.. + .-+
T Consensus 31 ~k~vlITGa-sggIG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 107 (272)
T 1yb1_A 31 GEIVLITGA-GHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEIG 107 (272)
T ss_dssp TCEEEEETT-TSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHHHHhcC--CeEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence 677887774 566676666655 8999999999887776666555443 47899999987642 0 014
Q ss_pred CccEEEeccccC
Q 016921 226 QFDLVWSMESGE 237 (380)
Q Consensus 226 ~fD~V~~~~~l~ 237 (380)
.+|+|+.+..+.
T Consensus 108 ~iD~li~~Ag~~ 119 (272)
T 1yb1_A 108 DVSILVNNAGVV 119 (272)
T ss_dssp CCSEEEECCCCC
T ss_pred CCcEEEECCCcC
Confidence 689998776553
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 380 | ||||
| d2o57a1 | 282 | c.66.1.18 (A:16-297) Putative sarcosine dimethylgl | 2e-33 | |
| d1nw3a_ | 328 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-23 | |
| d1u2za_ | 406 | c.66.1.31 (A:) Catalytic, N-terminal domain of his | 1e-18 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 1e-16 | |
| d1kpga_ | 285 | c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [ | 2e-15 | |
| d1kpia_ | 291 | c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [ | 3e-14 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 3e-13 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 3e-13 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 9e-13 | |
| d1l3ia_ | 186 | c.66.1.22 (A:) Precorrin-6Y methyltransferase (Cbi | 1e-12 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 4e-12 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 5e-12 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 6e-12 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 3e-11 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 7e-11 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 1e-10 | |
| d2fk8a1 | 280 | c.66.1.18 (A:22-301) Methoxy mycolic acid synthase | 4e-10 | |
| d1g8aa_ | 227 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro | 2e-09 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 4e-09 | |
| d1yb2a1 | 250 | c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T | 6e-09 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 6e-09 | |
| d1i9ga_ | 264 | c.66.1.13 (A:) Probable methyltransferase Rv2118c | 2e-08 | |
| d1o54a_ | 266 | c.66.1.13 (A:) Hypothetical protein TM0748 {Thermo | 2e-08 | |
| d1oria_ | 316 | c.66.1.6 (A:) Protein arginine N-methyltransferase | 2e-08 | |
| d2p7ia1 | 225 | c.66.1.41 (A:22-246) Hypothetical protein ECA1738 | 2e-08 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 2e-08 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 3e-08 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 4e-08 | |
| d2b25a1 | 324 | c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 | 6e-08 | |
| d1g8sa_ | 230 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Meth | 6e-08 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 8e-08 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 3e-07 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 6e-07 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-06 | |
| d1nt2a_ | 209 | c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch | 3e-06 | |
| d2ex4a1 | 222 | c.66.1.42 (A:2-224) Adrenal gland protein AD-003 ( | 3e-06 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 1e-05 | |
| d1yzha1 | 204 | c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra | 5e-05 | |
| d2nxca1 | 254 | c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT | 5e-05 | |
| d2fcaa1 | 204 | c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr | 9e-05 | |
| d1ne2a_ | 197 | c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae | 4e-04 | |
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 7e-04 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Length = 282 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Score = 123 bits (309), Expect = 2e-33
Identities = 66/291 (22%), Positives = 116/291 (39%), Gaps = 15/291 (5%)
Query: 92 ARELKEGIAEFYD--ESSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
++ +K+ +YD +S + +W G+ +H G Y V + R A +R E
Sbjct: 1 SKTVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLY--KEPVDQDEIREASLRTDEWLASE 58
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
+R +D+G G GG++R+L +KFG + ++PVQ +R GLAD
Sbjct: 59 L-AMTGVLQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLAD 117
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD 268
++ + G L+ P D +D +WS ++ H PDK K E ARV P G + I D
Sbjct: 118 NITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKED 177
Query: 269 LAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328
++ ++ I D L S Y L + L ++ ++ +
Sbjct: 178 ---------GIDKSSIQPILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHHYS 228
Query: 329 AVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
V + + + + IEG + + + + RK
Sbjct: 229 KVKAELIKRSSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKS 279
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Score = 98.0 bits (243), Expect = 1e-23
Identities = 35/269 (13%), Positives = 74/269 (27%), Gaps = 47/269 (17%)
Query: 93 RELKEGIAEFYDESSSLWEDI--------WGDHMHHGFYEPDSSVSVSDHRAAQVRMIEE 144
+ + + S+ L I D YEP S + ++ +
Sbjct: 86 KGTTQPMKLNTRPSTGLLRHILQQVYNHSVTDPEKLNNYEPFSPEV---YGETSFDLVAQ 142
Query: 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPV-------QAQR 196
+ +++D VD+G G+G +A G+ + + +
Sbjct: 143 MIDEIKMTDD-----DLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDRE 197
Query: 197 ANALAAARGLA-DKVSFQVGDALQQPFPDGQFDL-VWSMESGEHMPDKSKFVSELARVTA 254
G + + + GD L + + + + V + + P+ + E
Sbjct: 198 FRKWMKWYGKKHAEYTLERGDFLSEEWRERIANTSVIFVNNFAFGPEVDHQLKERFANMK 257
Query: 255 PAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314
G I+ + AP + L I + V
Sbjct: 258 EGGRIV----SSKPFAPLNFRINSRN---LSDIGTIMRVVELSPLKGSV----------- 299
Query: 315 KAEDWSQNVAPFWPAVIHSALTWKGFTSL 343
W+ ++ I + F+SL
Sbjct: 300 ---SWTGKPVSYYLHTIDRTILENYFSSL 325
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 406 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.7 bits (209), Expect = 1e-18
Identities = 24/220 (10%), Positives = 61/220 (27%), Gaps = 42/220 (19%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRAN 198
+ + + + + T +D+G G+G A + G A G + +
Sbjct: 203 NFLSDVYQQCQLKKGDT-----FMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTI 257
Query: 199 ALAAARGLADK----------VSFQVGDALQQPFPD--GQFDLVWSMESGEHMPDKSKFV 246
K S + + Q D++ + + D +K V
Sbjct: 258 LQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELIPQCDVIL-VNNFLFDEDLNKKV 316
Query: 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLL 306
++ + II + L + + E + L
Sbjct: 317 EKILQTAKVGCKII----SLKSLRSLTYQINFYNVE------------------NIFNRL 354
Query: 307 QSLSLEDIK-AEDWSQNVAPFWPAVIHSALTWKGFTSLLR 345
+ + + + W+ + ++ + + + F+ R
Sbjct: 355 KVQRYDLKEDSVSWTHSGGEYYISTVMEDVDESLFSPAAR 394
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 76.5 bits (187), Expect = 1e-16
Identities = 41/210 (19%), Positives = 74/210 (35%), Gaps = 17/210 (8%)
Query: 128 SVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGI 187
++S S+HR EE G K ++D+G G G A+ G GI
Sbjct: 5 TISESEHRIHN-PFTEEKYATLGRVLRM-KPGTRILDLGSGSGEMLCTWARDHGITGTGI 62
Query: 188 TLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVS 247
+S + +A A G++++V F DA + + D+ + + +
Sbjct: 63 DMSSLFTAQAKRRAEELGVSERVHFIHNDA-AGYVANEKCDVAACVGATWIAGGFAGAEE 121
Query: 248 ELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQ 307
LA+ P G ++I R L +EE + + C + + V
Sbjct: 122 LLAQSLKPGGIMLIGEPYWRQLPATEE---------IAQACGVSSTSDFLTLPGLVGAFD 172
Query: 308 SLSLEDIKA-----EDWSQNVAPFWPAVIH 332
L + ++ E W + A W +
Sbjct: 173 DLGYDVVEMVLADQEGWDRYEAAKWLTMRR 202
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 73.7 bits (180), Expect = 2e-15
Identities = 35/177 (19%), Positives = 59/177 (33%), Gaps = 16/177 (9%)
Query: 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSE 153
+ YD S + + ++E D + AQ+ I+ L G+
Sbjct: 7 FANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDD----MTLQEAQIAKIDLALGKLGLQP 62
Query: 154 DPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213
++DVGCG G + +K+ G+TLS QA L A
Sbjct: 63 G-----MTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVL 117
Query: 214 VGDALQQPFPDGQFDLVWSMESGEHMPDKS--KFVSELARVTAPAGTIIIVTWCHRD 268
+ D D + S+ + EH + F S R+ G +++ T
Sbjct: 118 LA---GWEQFDEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVMLLHTITGLH 171
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 291 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 70.3 bits (171), Expect = 3e-14
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 23/202 (11%)
Query: 97 EGIAEFYDESSSLWEDIWGDHMH--HGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSED 154
E + YD+S+ ++ M ++E AQ + L +
Sbjct: 7 EAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEPG 62
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
++D+GCG G + R+ ++ G+TLS Q A+ + ++
Sbjct: 63 -----MTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRI 117
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDK---------SKFVSELARVTAPAGTIIIVTWC 265
D D + S+ + EH D F + +T G +++ T
Sbjct: 118 ---QGWEEFDEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTIT 174
Query: 266 HRDLAPSEESLQPWEQELLKKI 287
D ++E LL+ I
Sbjct: 175 IPDKEEAQELGLTSPMSLLRFI 196
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 67.2 bits (163), Expect = 3e-13
Identities = 36/220 (16%), Positives = 68/220 (30%), Gaps = 15/220 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+P ++VD GCG G L + + + A A R L F GD
Sbjct: 26 TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGD 85
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT--WCHRDLAPSEE 274
A + D ++D+ HM + ++ G II W + +
Sbjct: 86 ATEIELND-KYDIAICHAFLLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLD 144
Query: 275 SLQPWEQELLKKICDAYYLPAWCSTAD------YVKLLQSLSLEDI------KAEDWSQN 322
+ E L + + + D L L +++I K N
Sbjct: 145 GEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECRVSDKVNFLDSN 204
Query: 323 VAPFWPAVIHSALTWKGFTSLLRTGLKTIKGALAMPLMIE 362
+ ++ +L +G + ++ +A L +
Sbjct: 205 MHHNDKNDLYQSLKEEGIAGDPGDKQQFVERLIARGLTYD 244
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 66.5 bits (161), Expect = 3e-13
Identities = 43/220 (19%), Positives = 83/220 (37%), Gaps = 11/220 (5%)
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
V+D+G G G ++ + +C G+ + + A++ A +G+ + Q P
Sbjct: 20 VLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAE-SLP 77
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
FPD FD++ + H D K V E+ARV G ++V P + L +
Sbjct: 78 FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYA----PEDPVLDEF-V 132
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVA-PFWPAVI-HSALTWKG 339
L ++ D ++ S +++ + + L + W+ + W A K
Sbjct: 133 NHLNRLRDPSHVRES-SLSEWQAMFSANQLAYQDIQKWNLPIQYDSWIKRGGTPADREKQ 191
Query: 340 FTSLLRTGLKTIKGALAMPLMIEGYQKNL-IKFAIITCRK 378
+ L + + L G + +K +I K
Sbjct: 192 IITHLNHASDEARDTFCITLNQNGQPISFCLKAILIQGIK 231
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 65.0 bits (157), Expect = 9e-13
Identities = 35/240 (14%), Positives = 78/240 (32%), Gaps = 15/240 (6%)
Query: 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALA 201
+ + ++ A + + + V+DV G G + A K L+ + A A
Sbjct: 4 LAKLMQIAALKGN-----EEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFI 57
Query: 202 AARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
G Q + + + + H P+ + FVSE RV G +++
Sbjct: 58 EGNGHQQVEYVQGDAEQMPFTDERFHIVTCRI-AAHHFPNPASFVSEAYRVLKKGGQLLL 116
Query: 262 VTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321
V + + E+E A+ +D++K+L+ E + + +
Sbjct: 117 VDNSAPENDAFDVFYNYVEKERDYSHHRAW------KKSDWLKMLEEAGFELEELHCFHK 170
Query: 322 NVA-PFWPAVIHSALTWK-GFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKP 379
W ++ K + +++ + + + ++ RKP
Sbjct: 171 TFIFEDWCDRMNVTTEKKQELSDFIKSKPTEYYQKFKIVVEDGRVYSFRGESILMKARKP 230
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 64.1 bits (155), Expect = 1e-12
Identities = 27/138 (19%), Positives = 43/138 (31%), Gaps = 4/138 (2%)
Query: 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANA 199
+R + + VDVGCG GG + + I +P
Sbjct: 15 GPTAMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLE-LAGRVRRVYAIDRNPEAISTTEM 73
Query: 200 LAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTI 259
GL D V+ GDA + D+ SG + + + + P G I
Sbjct: 74 NLQRHGLGDNVTLMEGDAPEALCKIPDIDIAVVGGSGGELQE---ILRIIKDKLKPGGRI 130
Query: 260 IIVTWCHRDLAPSEESLQ 277
I+ + E L+
Sbjct: 131 IVTAILLETKFEAMECLR 148
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 63.4 bits (153), Expect = 4e-12
Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 5/118 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
KR +V+D+GCG GG + + G+ ++ V A A KV F+ D
Sbjct: 23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQD 82
Query: 217 ALQQPF-PDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDL 269
+ + +FD++ S S + +AR P G I+ +
Sbjct: 83 SYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVI 140
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 63.3 bits (153), Expect = 5e-12
Identities = 30/190 (15%), Positives = 57/190 (30%), Gaps = 16/190 (8%)
Query: 103 YDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQ-VRMIEETLRFAGVSEDPTKRPKN 161
+ +E ++G E + + ++E +R A K +
Sbjct: 55 GETRKPDYELLYGSDTVTVHVENGIKYKLDVAKIMFSPANVKERVRMA----KVAKPDEL 110
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
VVD+ GIG S +A AK I P + + D++S D
Sbjct: 111 VVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF- 169
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
+ D + ++ +F+ + + I E+ +
Sbjct: 170 PGENIADRILMG----YVVRTHEFIPKALSIAKDGAIIHYHNTVP------EKLMPREPF 219
Query: 282 ELLKKICDAY 291
E K+I Y
Sbjct: 220 ETFKRITKEY 229
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 63.4 bits (153), Expect = 6e-12
Identities = 35/186 (18%), Positives = 57/186 (30%), Gaps = 41/186 (22%)
Query: 96 KEGIAEFYDES--SSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVR-MIEETLRFAGVS 152
EGI + Y + + +W+ GD R A+ + + LR
Sbjct: 14 AEGIPDQYADGEAARVWQLYIGDT---------------RSRTAEYKAWLLGLLR----- 53
Query: 153 EDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212
V+DV CG G S L ++ G + S + A R
Sbjct: 54 ---QHGCHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDK 109
Query: 213 QVGDALQ-------QPFPDGQFDLVWSMESGEHMPDKS-------KFVSELARVTAPAGT 258
V + P DG ++ S H+PD + +A + P G
Sbjct: 110 WVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGL 169
Query: 259 IIIVTW 264
++I
Sbjct: 170 LVIDHR 175
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 61.2 bits (147), Expect = 3e-11
Identities = 27/201 (13%), Positives = 57/201 (28%), Gaps = 25/201 (12%)
Query: 130 SVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQ---- 185
+ S +++ L TK ++ +G G G + K A+
Sbjct: 12 NHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCI 71
Query: 186 ---GITLSPVQAQRANALAAARGLADKVSFQ--------VGDALQQPFPDGQFDLVWSME 234
+ S Q + L A + V F + + ++D + ++
Sbjct: 72 NNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIHMIQ 131
Query: 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLP 294
++ D + + ++I+ W++ L KK +
Sbjct: 132 MLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGS---------SGWDK-LWKKYGSRFPQD 181
Query: 295 AWCSTADYVKLLQSLSLEDIK 315
C L Q L +K
Sbjct: 182 DLCQYITSDDLTQMLDNLGLK 202
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.3 bits (145), Expect = 7e-11
Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 5/128 (3%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVGCG G S + AK K G+ S +A + L D ++ G
Sbjct: 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGK 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMPDKS---KFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + +S + + A G + C L
Sbjct: 93 IEEVHLPVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGG-SVYPDICTISLVAVS 151
Query: 274 ESLQPWEQ 281
+ + ++
Sbjct: 152 DVNKHADR 159
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 59.9 bits (144), Expect = 1e-10
Identities = 31/132 (23%), Positives = 48/132 (36%), Gaps = 9/132 (6%)
Query: 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA 217
+ K V+DVGCG G S + AK G+ +S + A L G +DK++ G
Sbjct: 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKL 96
Query: 218 LQQPFPDGQFDLVWSMESGEHMPDKSKFVS---ELARVTAPAGTII-----IVTWCHRDL 269
P + D++ S G + +S + G I I D
Sbjct: 97 EDVHLPFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIFPDKCSIHLAGLEDS 156
Query: 270 APSEESLQPWEQ 281
+E L W+
Sbjct: 157 QYKDEKLNYWQD 168
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 57.6 bits (138), Expect = 4e-10
Identities = 33/236 (13%), Positives = 61/236 (25%), Gaps = 18/236 (7%)
Query: 103 YDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
YD S + + ++EP AQ ++ L +
Sbjct: 4 YDVSDDFFALFQDPTRTYSCAYFEPPE----LTLEEAQYAKVDLNLDKLDLKPG-----M 54
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
++D+GCG G + R ++F G+TLS Q R + A+ +
Sbjct: 55 TLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF 114
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
P + + + E H F + G + + + +
Sbjct: 115 AEPVDRIVSIEAFEHFGHEN-YDDFFKRCFNIMPADGRMTVQSSVSYHPYEMAARGKKLS 173
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALT 336
E + I + + E V H T
Sbjct: 174 FETARFI-KFIVTEIFPGGRLPS-----TEMMVEHGEKAGFTVPEPLSLRPHYIKT 223
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 55.1 bits (132), Expect = 2e-09
Identities = 20/140 (14%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRANALAAARGLA 207
G+ P K K+V+ +G G ++ +++ G K GI SP + + R
Sbjct: 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + + D+++ + G +I
Sbjct: 125 VPILGDATKPEEYRALVPKVDVIFEDV--AQPTQAKILIDNAEVYLKRGGYGMIAVKSRS 182
Query: 267 RDLAPSEESLQPWEQELLKK 286
D+ E + + L +
Sbjct: 183 IDVTKEPEQVFREVERELSE 202
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.7 bits (130), Expect = 4e-09
Identities = 17/175 (9%), Positives = 36/175 (20%), Gaps = 41/175 (23%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV-- 214
+ ++D+G G A + + A + V
Sbjct: 50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKF 109
Query: 215 -------------------------------GDALQQPFPDGQFDLVWSMESGEHMP--- 240
P D V ++ + E
Sbjct: 110 ACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL 169
Query: 241 -DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPW----EQELLKKICDA 290
+ LA + P G ++ + + E+ + + DA
Sbjct: 170 DAYRAALCNLASLLKPGGHLVTTVTLRLPSYMVGKREFSCVALEKGEVEQAVLDA 224
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Score = 53.9 bits (129), Expect = 6e-09
Identities = 20/123 (16%), Positives = 37/123 (30%), Gaps = 8/123 (6%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
+ ++++VG G G S Y+ K + ++A + V
Sbjct: 84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR 143
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274
D D +D V + +PD V ++A + P +
Sbjct: 144 SDI-ADFISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPNFDQSEKTVL 197
Query: 275 SLQ 277
SL
Sbjct: 198 SLS 200
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 53.0 bits (126), Expect = 6e-09
Identities = 23/126 (18%), Positives = 39/126 (30%), Gaps = 5/126 (3%)
Query: 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV 210
++ P +D+GCG G +S YLA A AA +
Sbjct: 23 LAAAKVVAPGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAEGLDNLQT 82
Query: 211 SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRD 268
+ L ++D + S + + ++ + R T P G +IV
Sbjct: 83 DLVDLNTLTFDG---EYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAMDTP 139
Query: 269 LAPSEE 274
P
Sbjct: 140 DFPCTV 145
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Length = 264 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 52.7 bits (126), Expect = 2e-08
Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 9/110 (8%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA--NALAAARGLADKVSFQVG 215
V++ G G G + L + G + A+ A N D V
Sbjct: 98 ARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVS 157
Query: 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D PDG D M + + ++R+ G +++
Sbjct: 158 DLADSELPDGSVDRAV-----LDMLAPWEVLDAVSRLLVAGGVLMVYVAT 202
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Score = 52.8 bits (126), Expect = 2e-08
Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 8/111 (7%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQ--GITLSPVQAQRANALAAARGLADKVSFQV 214
K ++D G G G LA+ G+ + A+ A + GL ++V+ +V
Sbjct: 102 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKV 161
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265
D + F + D ++ +PD ++ + G V
Sbjct: 162 RDI-SEGFDEKDVDALF-----LDVPDPWNYIDKCWEALKGGGRFATVCPT 206
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.9 bits (126), Expect = 2e-08
Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 5/122 (4%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
+ K V+DVG G G + AK K GI S + A + A L V+ G
Sbjct: 32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGK 90
Query: 217 ALQQPFPDGQFDLVWSMESGEHM---PDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSE 273
+ P + D++ S G + + + + AP +I + E
Sbjct: 91 VEEVELPVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAP-DGLIFPDRATLYVTAIE 149
Query: 274 ES 275
+
Sbjct: 150 DR 151
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Score = 52.2 bits (124), Expect = 2e-08
Identities = 20/166 (12%), Positives = 46/166 (27%), Gaps = 10/166 (6%)
Query: 155 PTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV 214
P RP N++++G G + L + + S A++ A+G +
Sbjct: 17 PFFRPGNLLELGSFKGDFTSRLQEH-FNDITCVEASE------EAISHAQGRLKDGITYI 69
Query: 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSE 273
+ ++D + EH+ D + + A G + +V ++
Sbjct: 70 HSRFEDAQLPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLFLVCPNANAVSRQI 129
Query: 274 ESLQPWEQELLKKICDAYYLPAWC--STADYVKLLQSLSLEDIKAE 317
+ C + + L+
Sbjct: 130 AVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 175
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 52.3 bits (124), Expect = 2e-08
Identities = 41/182 (22%), Positives = 63/182 (34%), Gaps = 18/182 (9%)
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLA 207
A + E + V+D+GCG G + A G+ +S V + A
Sbjct: 75 AQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKA------AAKRY 128
Query: 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHR 267
+V+F V + + PF D D + + + ELARV P G +I T R
Sbjct: 129 PQVTFCVASSHRLPFSDTSMDAIIRIYAPCKA-------EELARVVKPGGWVITATPGPR 181
Query: 268 DLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFW 327
L E E+ A L + + +L + L +A Q W
Sbjct: 182 HL---MELKGLIYNEVHLHAPHAEQLEGF-TLQQSAELCYPMRLRGDEAVALLQMTPFAW 237
Query: 328 PA 329
A
Sbjct: 238 RA 239
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 51.9 bits (123), Expect = 3e-08
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 25/208 (12%)
Query: 91 AARELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRF 148
+L + +Y ++ W + + G V D IE + F
Sbjct: 38 LTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGM----DHVHDVD--------IEGSRNF 85
Query: 149 AGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD 208
++ P +D G GIG ++ L K A + + A
Sbjct: 86 --IASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAK---RELAGMP 140
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAGTIIIVTWCH 266
F + P +DL+ + ++ D KF + P G I C
Sbjct: 141 VGKFILASMETATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCS 200
Query: 267 RD----LAPSEESLQPWEQELLKKICDA 290
+ + SL + + ++
Sbjct: 201 TGDRFLVDKEDSSLTRSDIHYKRLFNES 228
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 51.3 bits (121), Expect = 4e-08
Identities = 41/252 (16%), Positives = 78/252 (30%), Gaps = 27/252 (10%)
Query: 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPK 160
E Y + ++ I+ + + A++ +EE + ED + +
Sbjct: 3 ELYTLLAEYYDTIYRRRI--------------ERVKAEIDFVEEIFK-----EDAKREVR 43
Query: 161 NVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220
V+D+ CG G + + G + G+ L + A A R L + +
Sbjct: 44 RVLDLACGTGIPTLE-LAERGYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAF 102
Query: 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280
+ +S D K S++A P G I C + W
Sbjct: 103 KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFITDFPCWF--YGGRDGPVVWN 160
Query: 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGF 340
++ K + + W V+ L+ L I + V F + T +
Sbjct: 161 EQ---KGEEKLVIMDWREVEPAVQKLRFKRLVQILRPNGE--VKAFLVDDELNIYTPREV 215
Query: 341 TSLLRTGLKTIK 352
L + +K
Sbjct: 216 RLLAEKYFEKVK 227
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Score = 51.7 bits (123), Expect = 6e-08
Identities = 20/119 (16%), Positives = 30/119 (25%), Gaps = 19/119 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFG--AKCQGITLSPVQAQRA----------NALAAAR 204
V++ G G GG S +L+K G + + A L+
Sbjct: 97 NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVE 156
Query: 205 GLADKVSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIII 261
D V F D FD V M + + G +
Sbjct: 157 EWPDNVDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAV 210
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 50.5 bits (120), Expect = 6e-08
Identities = 17/139 (12%), Positives = 36/139 (25%), Gaps = 5/139 (3%)
Query: 148 FAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGL 206
G+ P KR ++ +G G + ++A I +P + A R
Sbjct: 64 IKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAEREN 123
Query: 207 ADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW-- 264
+ Q + + + E + G +I
Sbjct: 124 IIPILGDANK--PQEYANIVEKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKAR 181
Query: 265 CHRDLAPSEESLQPWEQEL 283
+E + ++ L
Sbjct: 182 SIDVTKDPKEIFKEQKEIL 200
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 50.1 bits (118), Expect = 8e-08
Identities = 16/154 (10%), Positives = 35/154 (22%), Gaps = 20/154 (12%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKV------ 210
V+ CG +L+ + G G LS +R +
Sbjct: 19 VPGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVY 77
Query: 211 ------SFQVGDALQQPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIV 262
+ G + + +P ++V L + A + +++
Sbjct: 78 AAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLI 137
Query: 263 TWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
T + + W
Sbjct: 138 TLEYDQALLEGPPFSVPQTW-----LHRVMSGNW 166
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 48.9 bits (115), Expect = 3e-07
Identities = 22/246 (8%), Positives = 57/246 (23%), Gaps = 23/246 (9%)
Query: 102 FYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKN 161
Y++ + +++ + + + I E + +
Sbjct: 2 CYNKFAHIYDKLIRADVDY---------------KKWSDFIIEKCVENNLV------FDD 40
Query: 162 VVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221
+D+ CG G + L KF + ++ N + + +
Sbjct: 41 YLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINR 100
Query: 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQ 281
D + S D K+ ++ G I + L+ +
Sbjct: 101 KFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFIFDINSYYKLSQVLGNNDFNYD 160
Query: 282 ELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSALTWKGFT 341
+ + ++ E+ + + I L
Sbjct: 161 DDEVFYYWENQFEDDLVSMYISFFVRDGEFYKRFDEEHEER--AYKEEDIEKYLKHGQLN 218
Query: 342 SLLRTG 347
L +
Sbjct: 219 ILDKVD 224
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 48.0 bits (113), Expect = 6e-07
Identities = 36/221 (16%), Positives = 64/221 (28%), Gaps = 12/221 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
W D + S + + E ++V+DVG G G
Sbjct: 42 RPFWEDLSAD----VALADSFDALMSCDEDLAYEAP----ADAYDWSAVRHVLDVGGGNG 93
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G +A + + A+RA A GLAD+V+ GD + L+
Sbjct: 94 GMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 153
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + R P G ++++ + + LL
Sbjct: 154 SFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRAD----VEGDGADRFFSTLLDLRMLT 209
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVI 331
+ + + V L S L PF +++
Sbjct: 210 FMGGRVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSIL 250
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 46.3 bits (108), Expect = 2e-06
Identities = 39/185 (21%), Positives = 71/185 (38%), Gaps = 11/185 (5%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216
K+ V+D+ CG+GG S L + + + + A A+ V F VGD
Sbjct: 36 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRESNVEFIVGD 92
Query: 217 ALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAP-SE 273
A + F D FD V ++S H + ++ E+ RV P+G I+ R+L P +
Sbjct: 93 ARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKPSGKFIMYFTDLRELLPRLK 152
Query: 274 ESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHS 333
ESL ++ + K +P ++ ++ W + + +
Sbjct: 153 ESLVVGQKYWISK-----VIPDQEERTVVIEFKSEQDSFRVRFNVWGKTGVELLAKLYFT 207
Query: 334 ALTWK 338
+
Sbjct: 208 KEAEE 212
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 45.5 bits (107), Expect = 3e-06
Identities = 16/140 (11%), Positives = 38/140 (27%), Gaps = 6/140 (4%)
Query: 150 GVSEDPTKRPKNVVDVGCGIGGSSRYLAK-KFGAKCQGITLSPVQAQRANALAAARGLAD 208
+ + V+ +G G + +LA + S ++ L R
Sbjct: 48 KGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERN--- 104
Query: 209 KVSFQVGDALQQPFPDGQFDLVWSMESGEHMP-DKSKFVSELARVTAPAGTIIIVTW-CH 266
+ + DA + G + V + + G ++I+
Sbjct: 105 NIIPLLFDASKPWKYSGIVEKVDLIYQDIAQKNQIEILKANAEFFLKEKGEVVIMVKARS 164
Query: 267 RDLAPSEESLQPWEQELLKK 286
D E + + ++
Sbjct: 165 IDSTAEPEEVFKSVLKEMEG 184
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (105), Expect = 3e-06
Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 15/203 (7%)
Query: 94 ELKEGIAEFYDESSSLWEDIWG--DHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGV 151
E+ E +FY ++ + W+ I D M G+ +S D +++ +
Sbjct: 3 EVIEDEKQFYSKAKTYWKQIPPTVDGMLGGYGH----ISSIDINSSRKFLQRFLREGPN- 57
Query: 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVS 211
+D G GIG ++ L + + ++ +A G +
Sbjct: 58 ----KTGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNY 113
Query: 212 FQVGDALQQPFPD-GQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRD-- 268
F G P PD + + ++F+ P G I+I ++
Sbjct: 114 FCCGLQDFTPEPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGV 173
Query: 269 -LAPSEESLQPWEQELLKKICDA 290
L + S+ + + IC A
Sbjct: 174 ILDDVDSSVCRDLDVVRRIICSA 196
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 43.9 bits (102), Expect = 1e-05
Identities = 34/224 (15%), Positives = 69/224 (30%), Gaps = 13/224 (5%)
Query: 111 EDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIG 170
+ + D PD S A + + + ++V+DVG G G
Sbjct: 41 KPFYEDLAGR----PDLRASFDSLLACDQDVAFDAP----AAAYDWTNVRHVLDVGGGKG 92
Query: 171 GSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLV 230
G + +A++ + A + GL+D+V GD + ++
Sbjct: 93 GFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 152
Query: 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290
+ D + ++ A P G I+I + E+ + L
Sbjct: 153 SFVLLNWPDHDAVRILTRCAEALEPGGRILIH-----ERDDLHENSFNEQFTELDLRMLV 207
Query: 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWPAVIHSA 334
+ A + + L S L + P+ +++ A
Sbjct: 208 FLGGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 251
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Score = 41.8 bits (97), Expect = 5e-05
Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
V+VG G G +AK+ GI + A G+ + V G L
Sbjct: 35 HVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLT 94
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F DG+ D ++ S + F+ R+ G I T
Sbjct: 95 DYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Score = 42.2 bits (98), Expect = 5e-05
Identities = 30/173 (17%), Positives = 54/173 (31%), Gaps = 7/173 (4%)
Query: 117 HMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYL 176
H + + + + A E T + V+D+G G G +
Sbjct: 79 APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAA 138
Query: 177 AKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236
K G K G+ + P+ +A A A G+ + F G + P G FDL+ +
Sbjct: 139 EKL-GGKALGVDIDPMVLPQAEANAKRNGVRPR--FLEGSL-EAALPFGPFDLLVANLYA 194
Query: 237 EHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICD 289
E P G ++ E++ L++ +
Sbjct: 195 ELHAA---LAPRYREALVPGGRALLTGILKDRAPLVREAMAGAGFRPLEEAAE 244
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Score = 41.0 bits (95), Expect = 9e-05
Identities = 21/112 (18%), Positives = 33/112 (29%), Gaps = 10/112 (8%)
Query: 162 VVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQ 219
++VG G G +AK+ GI L A + + D L
Sbjct: 33 HIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLT 92
Query: 220 QPFPDGQFDLVWSMESGEHMPDKS--------KFVSELARVTAPAGTIIIVT 263
F G+ V+ S + F+ + V G+I T
Sbjct: 93 DVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 38.6 bits (89), Expect = 4e-04
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 160 KNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219
++V+D G G G + + P +A+ A+ V+F V D +
Sbjct: 50 RSVIDAGTGNGILACGSYLLGAESVTAFDIDP------DAIETAKRNCGGVNFMVADVSE 103
Query: 220 QPFPDGQFDLVWS 232
G++D
Sbjct: 104 ---ISGKYDTWIM 113
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (88), Expect = 7e-04
Identities = 16/159 (10%), Positives = 38/159 (23%), Gaps = 25/159 (15%)
Query: 157 KRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL---------- 206
K V CG ++ A G G+ +S + Q
Sbjct: 44 KSGLRVFFPLCGKAVEMKWFA-DRGHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGT 102
Query: 207 ------ADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHM--PDKSKFVSELARVTAPAG 257
+ +S G+FD++W + + D+ + + +
Sbjct: 103 KVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKF 162
Query: 258 TIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAW 296
++ + E+ + +
Sbjct: 163 QYLLCVLSYDPTKHPGPPFYVPHAEI-----ERLFGKIC 196
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 380 | |||
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 100.0 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 100.0 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 100.0 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.96 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.94 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.94 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.91 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.9 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.88 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.88 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.87 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.87 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.84 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.84 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.84 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.83 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.83 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.8 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.79 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.78 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.77 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.75 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.74 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.74 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.73 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.73 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.73 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.69 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.69 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.69 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.68 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.67 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.64 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.62 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.61 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.61 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.59 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.58 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.58 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.56 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.55 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.54 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.53 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.52 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.5 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.5 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.49 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.49 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.45 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.43 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.4 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.34 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.27 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 99.27 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.25 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 99.22 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.22 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 99.2 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.17 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.1 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.09 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 99.07 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.07 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.06 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.01 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.97 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.91 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.89 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.89 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.81 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.81 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.66 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.66 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.59 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.59 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.57 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.57 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.5 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.49 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.47 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.47 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 98.47 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.45 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.44 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.39 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.39 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.32 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.31 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 98.17 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.16 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.07 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 97.98 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.96 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 97.94 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.71 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.59 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.31 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.15 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 97.04 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.0 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 96.94 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.86 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.85 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.76 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.74 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.71 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.61 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.51 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 96.41 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.38 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 96.38 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 96.27 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.21 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.17 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.1 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 95.69 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.31 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 95.25 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.21 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 95.13 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 95.12 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.67 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.64 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.5 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 94.41 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 94.11 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 93.54 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 93.37 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 92.85 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 92.74 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.67 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 91.97 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.89 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 91.26 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 91.14 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 90.98 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 90.89 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.76 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 90.7 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.5 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 89.3 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 88.77 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 88.68 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.72 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 87.67 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 87.32 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 87.27 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 87.15 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 87.1 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 85.92 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.41 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 85.34 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 84.77 | |
| d2drpa2 | 26 | Tramtrack protein (two zinc-finger peptide) {Droso | 84.02 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 83.76 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 83.55 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 83.45 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.19 | |
| d1orra_ | 338 | CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: | 82.1 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 81.56 | |
| d1i24a_ | 393 | Sulfolipid biosynthesis protein SQD1 {Thale cress | 81.31 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 81.24 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 81.21 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 81.21 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 80.87 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 80.47 |
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=100.00 E-value=2.4e-36 Score=276.13 Aligned_cols=268 Identities=25% Similarity=0.413 Sum_probs=199.5
Q ss_pred HHHHHHHHHhcc--chhhHHHhh-cccccccccCCCCCCCcccHHHHHHHHHHHHH----HHcCCCCCCCCCCCEEEEEC
Q 016921 94 ELKEGIAEFYDE--SSSLWEDIW-GDHMHHGFYEPDSSVSVSDHRAAQVRMIEETL----RFAGVSEDPTKRPKNVVDVG 166 (380)
Q Consensus 94 ~~~~~i~~~yd~--~~~~y~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll----~~~~~~~~~~~~~~~vLDiG 166 (380)
.+.+++..|||. ...+|..+| |+++|+|||..+.... ..+.++.+..+.++ ...++. ++.+|||||
T Consensus 3 ~~~~~~~~~y~~~~~~~fy~~~w~g~~~h~G~~~~~~~~~--~~~~a~~~~~~~~~~~l~~~~~l~-----~~~~vLDiG 75 (282)
T d2o57a1 3 TVKDNAEIYYDDDDSDRFYFHVWGGEDIHVGLYKEPVDQD--EIREASLRTDEWLASELAMTGVLQ-----RQAKGLDLG 75 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHTTSCCCSCCCCSSGGGS--CHHHHHHHHHHHHHHHHHHTTCCC-----TTCEEEEET
T ss_pred hHHHHHHHhcCCchhHHHHHHHcCCCCceeeecCCCCCCc--CHHHHHHHHHHHHHHHHHHhcCCC-----CCCEEEEeC
Confidence 566778999998 568898888 5789999997654322 24445544444444 344454 499999999
Q ss_pred CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHH
Q 016921 167 CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFV 246 (380)
Q Consensus 167 cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l 246 (380)
||+|.++..++++++++|+|+|+|+.|++.|+++....|+.++++|+++|++++|+++++||+|++..+++|++++.+++
T Consensus 76 cG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~~~l 155 (282)
T d2o57a1 76 AGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKLKVF 155 (282)
T ss_dssp CTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEESCGGGCSCHHHHH
T ss_pred CCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccchhhhccCHHHHH
Confidence 99999999999887899999999999999999999999998899999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCc
Q 016921 247 SELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (380)
Q Consensus 247 ~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~ 326 (380)
++++++|||||++++.++......... ... . +......+.+.+.+++.++++++||+++.+.+.+..+..+
T Consensus 156 ~~~~~~LkpgG~l~~~~~~~~~~~~~~-~~~----~----~~~~~~~~~~~s~~~~~~~l~~~Gf~~i~~~d~~~~~~~~ 226 (282)
T d2o57a1 156 QECARVLKPRGVMAITDPMKEDGIDKS-SIQ----P----ILDRIKLHDMGSLGLYRSLAKECGLVTLRTFSRPDSLVHH 226 (282)
T ss_dssp HHHHHHEEEEEEEEEEEEEECTTCCGG-GGH----H----HHHHHTCSSCCCHHHHHHHHHHTTEEEEEEEECHHHHHHH
T ss_pred HHHHHhcCCCcEEEEEEeecCCCCchh-HHH----H----HHHHhccCCCCCHHHHHHHHHHcCCceEEEEECcHhHHHH
Confidence 999999999999999987654432211 111 1 1222334456789999999999999999998876655444
Q ss_pred hHHHHHhhhhhhhhHHHHhhch--hh-hhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 327 WPAVIHSALTWKGFTSLLRTGL--KT-IKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
+.......... ...+.... +. .+....+..+.++...|.+.|++++||||+
T Consensus 227 ~~~~~~~~~~~---~~~~~~~~~~e~~~~~~~~~~~~~~~~~~g~~~~g~~varK~~ 280 (282)
T d2o57a1 227 YSKVKAELIKR---SSEIASFCSPEFQANMKRGLEHWIEGGRAGKLTWGGMLFRKSD 280 (282)
T ss_dssp HHHHHHHHHHT---HHHHTTTSCHHHHHHHHHHHHHHHHHHHTTSEEEEEEEEEESS
T ss_pred HHHHHHHHHHH---HHHHHhhcCHHHHHHHHHHHHHHHHHHhCCeeEEEEEEEEcCC
Confidence 43333222111 00111111 11 122233455667788899999999999996
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=5.3e-32 Score=245.39 Aligned_cols=268 Identities=17% Similarity=0.146 Sum_probs=200.7
Q ss_pred HHHHHHHHhccchhhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChH
Q 016921 95 LKEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGS 172 (380)
Q Consensus 95 ~~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~ 172 (380)
..++|+.|||..+++|..++|+++++ |||+.+... +.+++.++++.+++++.+++ +.+|||||||+|.+
T Consensus 6 ~~~~i~~HYD~~~~fy~~~Lg~~~~YS~g~~~~~~~t----L~eAQ~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~ 76 (285)
T d1kpga_ 6 HFANVQAHYDLSDDFFRLFLDPTQTYSCAYFERDDMT----LQEAQIAKIDLALGKLGLQP-----GMTLLDVGCGWGAT 76 (285)
T ss_dssp CHHHHHHHHTSCHHHHTTTSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHTTTTCCT-----TCEEEEETCTTSHH
T ss_pred cHHHHHHhcCCcHHHHHHhCCCCCcEeeEEeCCCCCC----HHHHHHHHHHHHHHHcCCCC-----CCEEEEecCcchHH
Confidence 34579999999999999999998875 999865433 78999999999999998876 99999999999999
Q ss_pred HHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCC--CHHHHHHHHH
Q 016921 173 SRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMP--DKSKFVSELA 250 (380)
Q Consensus 173 ~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~ 250 (380)
+..+++..|++|+|+++|+.+++.|++++++.++.+++.+..+|+.+++ ++||.|++.++++|+. +...+++++.
T Consensus 77 a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~---~~fD~i~si~~~eh~~~~~~~~~~~~~~ 153 (285)
T d1kpga_ 77 MMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD---EPVDRIVSIGAFEHFGHERYDAFFSLAH 153 (285)
T ss_dssp HHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC---CCCSEEEEESCGGGTCTTTHHHHHHHHH
T ss_pred HHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc---ccccceeeehhhhhcCchhHHHHHHHHH
Confidence 9999998899999999999999999999999999999999999998764 6899999999999994 5689999999
Q ss_pred HhcCCCcEEEEEeccCCCCCC-Ccc--ccchHH---HHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 251 RVTAPAGTIIIVTWCHRDLAP-SEE--SLQPWE---QELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 251 r~LkpgG~l~~~~~~~~~~~~-~~~--~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
++|||||++++.+++...... ... ...... ..++. .++.... ..+.+++..+++++||++++++++..+.
T Consensus 154 r~LkpgG~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~---lPsl~~~~~~~e~agf~v~~~~~~~~hY 230 (285)
T d1kpga_ 154 RLLPADGVMLLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGR---LPSIPMVQECASANGFTVTRVQSLQPHY 230 (285)
T ss_dssp HHSCTTCEEEEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCC---CCCHHHHHHHHHTTTCEEEEEEECHHHH
T ss_pred hhcCCCCcEEEEEEeccCchhhccccCCcchhhhchhhHHHHHhccCCC---CCChhhHHHHHHHhchhhcccccchhhH
Confidence 999999999998876322110 000 111111 11222 2233333 3588999999999999999999988766
Q ss_pred CCchHHHHHhhh-hhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 324 APFWPAVIHSAL-TWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 324 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
......+..... .+..+..+.-..+- .+....+.....+++.|.+....++.+|
T Consensus 231 arTl~~W~~~f~~~~~ei~~~~~~~~~-rrw~~Yl~~c~~~F~~g~~~v~q~~~~k 285 (285)
T d1kpga_ 231 AKTLDLWSAALQANKGQAIALQSEEVY-ERYMKYLTGCAEMFRIGYIDVNQFTCQK 285 (285)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHSCHHHH-HHHHHHHHHHHHHHHTTSEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 443333322222 11222222111111 1122244455677888999999999887
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=6.1e-31 Score=239.07 Aligned_cols=267 Identities=15% Similarity=0.128 Sum_probs=197.5
Q ss_pred HHHHHHHhccchhhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHH
Q 016921 96 KEGIAEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSS 173 (380)
Q Consensus 96 ~~~i~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~ 173 (380)
.++|.+|||..+++|..++|+++++ +||+.+.. .+.+++.++++.+++++.+++ +.+|||||||+|.++
T Consensus 6 ~~~i~~HYD~~~~fy~~~Lg~~~~YS~~~~~~~~~----tL~~Aq~~k~~~~~~~l~l~~-----G~~VLDiGCG~G~~~ 76 (291)
T d1kpia_ 6 VEAVRSHYDKSNEFFKLWLDPSMTYSCAYFERPDM----TLEEAQYAKRKLALDKLNLEP-----GMTLLDIGCGWGSTM 76 (291)
T ss_dssp HHHHHHHHTSCHHHHHHHSCTTCCCSCCCCSSTTC----CHHHHHHHHHHHHHHTTCCCT-----TCEEEEETCTTSHHH
T ss_pred HhHHHHhcCCCHHHHHHhcCCCCCeeeEEecCCCC----CHHHHHHHHHHHHHHhcCCCC-----CCEEEEecCcchHHH
Confidence 3679999999999999999988754 99986543 278999999999999999876 999999999999999
Q ss_pred HHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC---------HHH
Q 016921 174 RYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD---------KSK 244 (380)
Q Consensus 174 ~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~---------~~~ 244 (380)
..++++++++|+|+|+|+++++.+++++...++..++.+...|... .+++||.|++..+++|+.+ ...
T Consensus 77 ~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~---~~~~fD~i~sie~~eH~~~~~~~~~~~~~~~ 153 (291)
T d1kpia_ 77 RHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE---FDEPVDRIVSLGAFEHFADGAGDAGFERYDT 153 (291)
T ss_dssp HHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG---CCCCCSEEEEESCGGGTTCCSSCCSTTHHHH
T ss_pred HHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc---cccccceEeechhHHhcchhhhhhHHHHHHH
Confidence 9999888999999999999999999999999998899999988753 4689999999999999975 579
Q ss_pred HHHHHHHhcCCCcEEEEEeccCCCCCCCcc--ccc-hH---HHHHHH-HHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 245 FVSELARVTAPAGTIIIVTWCHRDLAPSEE--SLQ-PW---EQELLK-KICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 245 ~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~--~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
+++++.++|||||++++.+++..+...... ... .. ...++. .+..... +.+..++..+++++||++++++
T Consensus 154 ~f~~i~~~LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFpgg~---lps~~~~~~~~e~~gl~v~~~~ 230 (291)
T d1kpia_ 154 FFKKFYNLTPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFPGGR---LPRISQVDYYSSNAGWKVERYH 230 (291)
T ss_dssp HHHHHHHTSCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCTTCC---CCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHHhCCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcCCCC---CCCHHHHHhhhcccccccceee
Confidence 999999999999999999876543210000 000 00 011222 1222222 4588999999999999999999
Q ss_pred ecCCCcCCchHHHHHhhhh-hhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEec
Q 016921 318 DWSQNVAPFWPAVIHSALT-WKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRK 378 (380)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arK 378 (380)
++..+.......+...... +..+..+....+.. .-...+.....+++.+......++..|
T Consensus 231 ~~~~hYa~TL~~W~~~f~~~~~ei~~l~g~~~~r-~W~~yl~~ce~~F~~~~~~v~q~~l~K 291 (291)
T d1kpia_ 231 RIGANYVPTLNAWADALQAHKDEAIALKGQETCD-IYMHYLRGCSDLFRDKYTDVCQFTLVK 291 (291)
T ss_dssp ECGGGHHHHHHHHHHHHHHTHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTTSSEEEEEEEEC
T ss_pred eccccHHHHHHHHHHHHHHHHHHHHHhcChHHHH-HHHHHHHHHHHHHHCCCCeEEEEEEEC
Confidence 9988865433333222211 12222221111111 122234455677888888877777765
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.1e-32 Score=244.63 Aligned_cols=265 Identities=14% Similarity=0.111 Sum_probs=194.2
Q ss_pred HHHhccchhhHHHhhcccccc--cccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHH
Q 016921 100 AEFYDESSSLWEDIWGDHMHH--GFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLA 177 (380)
Q Consensus 100 ~~~yd~~~~~y~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~ 177 (380)
+.|||..+++|..++++++++ +||+.+... +..++.++++.+++.+.+++ +.+|||||||+|.++..++
T Consensus 1 qaHYD~~~~fy~~~ld~~m~YS~~~~~~~~~t----L~~AQ~~k~~~~~~~l~l~~-----g~~VLDiGCG~G~~a~~~a 71 (280)
T d2fk8a1 1 QAHYDVSDDFFALFQDPTRTYSCAYFEPPELT----LEEAQYAKVDLNLDKLDLKP-----GMTLLDIGCGWGTTMRRAV 71 (280)
T ss_dssp GGGGCCCHHHHTTTSCTTCCCSCCCCSSTTCC----HHHHHHHHHHHHHTTSCCCT-----TCEEEEESCTTSHHHHHHH
T ss_pred CCCccCcHHHHHHhCCCCCcEeeEEeCCCCCC----HHHHHHHHHHHHHHHcCCCC-----CCEEEEecCCchHHHHHHH
Confidence 369999999999999998876 899876433 78999999999999998876 9999999999999999999
Q ss_pred HHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCC
Q 016921 178 KKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAP 255 (380)
Q Consensus 178 ~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~Lkp 255 (380)
+..+++|+|+|+|+++++.|++++++.++..++.+...|..++ +++||.|++..+++|+.+ ...++++++++|||
T Consensus 72 ~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~---~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp 148 (280)
T d2fk8a1 72 ERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF---AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPA 148 (280)
T ss_dssp HHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC---CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCT
T ss_pred HhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh---ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCC
Confidence 8889999999999999999999999999988899999888765 378999999999999964 58999999999999
Q ss_pred CcEEEEEeccCCCCCCCccccch------HHHHHHHH-HhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCcCCchH
Q 016921 256 AGTIIIVTWCHRDLAPSEESLQP------WEQELLKK-ICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNVAPFWP 328 (380)
Q Consensus 256 gG~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~~~~~~ 328 (380)
||++++.+............... ....++.+ +..... +++.+++.+.++++||++++++++..+......
T Consensus 149 gG~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~---lPS~~~l~~~~e~aGf~v~~~~~~~~hYa~TL~ 225 (280)
T d2fk8a1 149 DGRMTVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGR---LPSTEMMVEHGEKAGFTVPEPLSLRPHYIKTLR 225 (280)
T ss_dssp TCEEEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCC---CCCHHHHHHHHHHTTCBCCCCEECHHHHHHHHH
T ss_pred CceEEEEEeeccCcchhhhcccccccccccccchhhhhccCCCc---ccchHhhhhhHHhhccccceeeecccCHHHHHH
Confidence 99999987543221100000000 00112222 222222 358999999999999999998887765433222
Q ss_pred HHHHhhh-hhhhhHHHHhhchhhhhhhhhHHHHHHHHhcCceEEEEEEEecCC
Q 016921 329 AVIHSAL-TWKGFTSLLRTGLKTIKGALAMPLMIEGYQKNLIKFAIITCRKPR 380 (380)
Q Consensus 329 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vv~arKP~ 380 (380)
.+..... .+..+..+.-..+- .+....+.....+++.+.+..+.++..||+
T Consensus 226 ~W~~~f~~~~~~i~~~~~~~~~-r~w~~yl~~c~~~F~~~~~~~~q~~~~kpg 277 (280)
T d2fk8a1 226 IWGDTLQSNKDKAIEVTSEEVY-NRYMKYLRGCEHYFTDEMLDCSLVTYLKPG 277 (280)
T ss_dssp HHHHHHHHTHHHHHHHSCHHHH-HHHHHHHHHHHHHHHTTSCEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCHHHH-HHHHHHHHHHHHHHhCCCccEEEEEEEcCC
Confidence 2111111 11122211111111 112234455667889999999999999995
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.96 E-value=2.7e-29 Score=222.05 Aligned_cols=167 Identities=23% Similarity=0.318 Sum_probs=135.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
+.++++.+++++ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...+. ++++|+++|++++|
T Consensus 4 ~~~ll~~~~l~~-----~~rVLDiGcG~G~~~~~l~~~-~~~v~gvD~s~~~i~~A~~~~~~~~~-~~i~~~~~d~~~l~ 76 (231)
T d1vl5a_ 4 LAKLMQIAALKG-----NEEVLDVATGGGHVANAFAPF-VKKVVAFDLTEDILKVARAFIEGNGH-QQVEYVQGDAEQMP 76 (231)
T ss_dssp HHHHHHHHTCCS-----CCEEEEETCTTCHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCC-CCC
T ss_pred HHHHHHhcCCCC-----cCEEEEecccCcHHHHHHHHh-CCEEEEEECCHHHHhhhhhccccccc-cccccccccccccc
Confidence 456777788776 899999999999999999987 78999999999999999999988876 58999999999999
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
+++++||+|++..+++|++|+..++++++++|||||++++.++..+.. ..+.. ....+....... ..+.++.++
T Consensus 77 ~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~----~~~~~-~~~~~~~~~~~~-~~~~~~~~~ 150 (231)
T d1vl5a_ 77 FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEN----DAFDV-FYNYVEKERDYS-HHRAWKKSD 150 (231)
T ss_dssp SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSS----HHHHH-HHHHHHHHHCTT-CCCCCBHHH
T ss_pred ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCC----HHHHH-HHHHHHhhcccC-cccCCCHHH
Confidence 999999999999999999999999999999999999999988654321 11111 112222222222 234678999
Q ss_pred HHHHHHhCCCcEEEEEecCC
Q 016921 302 YVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~~~~ 321 (380)
+.++|+++||++++++.+..
T Consensus 151 ~~~~l~~aGf~~~~~~~~~~ 170 (231)
T d1vl5a_ 151 WLKMLEEAGFELEELHCFHK 170 (231)
T ss_dssp HHHHHHHHTCEEEEEEEEEE
T ss_pred HHHHHHHCCCEEEEEEEeec
Confidence 99999999999988776543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.94 E-value=6.6e-27 Score=207.15 Aligned_cols=170 Identities=22% Similarity=0.396 Sum_probs=137.9
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.+++.+++++ +.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|++++...++ +++.++++|++++
T Consensus 4 ~~~~l~~~~~~~~-----~~rILDiGcGtG~~~~~la~~-~~~v~gvD~S~~~l~~A~~~~~~~~~-~~~~~~~~d~~~~ 76 (234)
T d1xxla_ 4 SLGLMIKTAECRA-----EHRVLDIGAGAGHTALAFSPY-VQECIGVDATKEMVEVASSFAQEKGV-ENVRFQQGTAESL 76 (234)
T ss_dssp HHHHHHHHHTCCT-----TCEEEEESCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHHTC-CSEEEEECBTTBC
T ss_pred HHHHHHHHhCCCC-----CCEEEEeCCcCcHHHHHHHHh-CCeEEEEeCChhhhhhhhhhhccccc-ccccccccccccc
Confidence 4555777787776 999999999999999999987 78999999999999999999988877 5799999999999
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
|+++++||+|++.++++|++|+..+++++.++|||||++++.++..... ..+..+. ..+.......+. +..+..
T Consensus 77 ~~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~~-~~~~~~ 150 (234)
T d1xxla_ 77 PFPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPED----PVLDEFV-NHLNRLRDPSHV-RESSLS 150 (234)
T ss_dssp CSCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSS----HHHHHHH-HHHHHHHCTTCC-CCCBHH
T ss_pred cccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEEcCCCCC----HHHHHHH-HHHHhhCCCccc-ccCCHH
Confidence 9999999999999999999999999999999999999999988654321 1112221 222223333332 346889
Q ss_pred HHHHHHHhCCCcEEEEEecCCCc
Q 016921 301 DYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
++..+++++||.+..+..+....
T Consensus 151 ~~~~~~~~~gf~~~~~~~~~~~~ 173 (234)
T d1xxla_ 151 EWQAMFSANQLAYQDIQKWNLPI 173 (234)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEE
T ss_pred HHHHHHHHCCCceeEEEEeeCcc
Confidence 99999999999988877665443
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=2.8e-25 Score=197.91 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=136.4
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++.+...+.+.+ +.+|||||||+|..+..+++..+++|+|+|+|+.|++.|+++....|+.++++|+++|+.++
T Consensus 21 ~~~~l~~~~~l~p-----g~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~ 95 (245)
T d1nkva_ 21 KYATLGRVLRMKP-----GTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 95 (245)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred HHHHHHHHcCCCC-----CCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence 5666777777765 99999999999999999998778999999999999999999999999988999999999997
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHH
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTA 300 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (380)
+++++||+|++..+++|++|+..++++++++|||||++++.+......... ..+...........+.+..
T Consensus 96 -~~~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l~i~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 165 (245)
T d1nkva_ 96 -VANEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIMLIGEPYWRQLPAT---------EEIAQACGVSSTSDFLTLP 165 (245)
T ss_dssp -CCSSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEEEEEEEEETTCCSS---------HHHHHTTTCSCGGGSCCHH
T ss_pred -cccCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEEEEEeccccCCCCh---------HHHHHHhccCCCcccCCHH
Confidence 467999999999999999999999999999999999999988654432211 1222222222223456889
Q ss_pred HHHHHHHhCCCcEEEEEecC
Q 016921 301 DYVKLLQSLSLEDIKAEDWS 320 (380)
Q Consensus 301 ~~~~ll~~aGf~~v~~~~~~ 320 (380)
++..+++++||+++......
T Consensus 166 ~~~~~~~~aG~~~v~~~~~~ 185 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLAD 185 (245)
T ss_dssp HHHHHHHTTTBCCCEEEECC
T ss_pred HHHHHHHHcCCEEEEEEeCC
Confidence 99999999999988765544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.91 E-value=9.1e-24 Score=183.21 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=110.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+. +++|+|+|+.|++.|++ .++.++++|++++++++++||+|++..+++|
T Consensus 37 ~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~--------~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h 103 (208)
T d1vlma_ 37 EGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARK--------RGVFVLKGTAENLPLKDESFDFALMVTTICF 103 (208)
T ss_dssp SSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHH--------TTCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred CCeEEEECCCCcccccccc-----eEEEEeCChhhcccccc--------ccccccccccccccccccccccccccccccc
Confidence 5689999999999887763 46899999999999886 2589999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
++|+..++++++++|+|||.+++.++.... ............. ....+++.+++.++|+++||++++
T Consensus 104 ~~d~~~~l~~~~~~L~pgG~l~i~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~ 173 (208)
T d1vlma_ 104 VDDPERALKEAYRILKKGGYLIVGIVDRES----------FLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFK 173 (208)
T ss_dssp SSCHHHHHHHHHHHEEEEEEEEEEEECSSS----------HHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEE
T ss_pred ccccccchhhhhhcCCCCceEEEEecCCcc----------hhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999998854321 1111122111111 112367999999999999999988
Q ss_pred EEe
Q 016921 316 AED 318 (380)
Q Consensus 316 ~~~ 318 (380)
+..
T Consensus 174 v~~ 176 (208)
T d1vlma_ 174 VVQ 176 (208)
T ss_dssp EEE
T ss_pred EEE
Confidence 764
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=3.3e-23 Score=181.58 Aligned_cols=145 Identities=14% Similarity=0.162 Sum_probs=119.3
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..++...+.+|+|+|+|+.|++.|++++...+. .+++|+++|++++++++++||+|++..+++
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~-~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~ 138 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGK-RVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 138 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGG-GEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccc-cccccccccccccccccccccccccccccc
Confidence 4789999999999999998766567999999999999999999877665 478999999999988889999999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEE
Q 016921 238 HMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIK 315 (380)
Q Consensus 238 ~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~ 315 (380)
|++++ .+++++++++|||||.+++.+........ +. .......++.+++.++++++||++++
T Consensus 139 h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~----~~------------~~~~~~~~~~~~~~~l~~~aGf~ii~ 202 (222)
T d2ex4a1 139 HLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVI----LD------------DVDSSVCRDLDVVRRIICSAGLSLLA 202 (222)
T ss_dssp GSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEE----EE------------TTTTEEEEBHHHHHHHHHHTTCCEEE
T ss_pred cchhhhhhhHHHHHHHhcCCcceEEEEEcccccccc----cc------------cCCceeeCCHHHHHHHHHHcCCEEEE
Confidence 99875 48999999999999999999865433111 00 00001124789999999999999998
Q ss_pred EEec
Q 016921 316 AEDW 319 (380)
Q Consensus 316 ~~~~ 319 (380)
.+.-
T Consensus 203 ~~~q 206 (222)
T d2ex4a1 203 EERQ 206 (222)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7653
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.88 E-value=4e-22 Score=174.96 Aligned_cols=153 Identities=16% Similarity=0.175 Sum_probs=117.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~ 234 (380)
++.+|||||||+|..+..+++.. +++|+|+|+|+.|++.|+++++..+...++.+..+|+.+.+ .+.+|+|++..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--~~~~d~i~~~~ 116 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--IKNASMVILNF 116 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC--CCSEEEEEEES
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc--cccceeeEEee
Confidence 48899999999999999999853 67999999999999999999988777778888888887665 56899999999
Q ss_pred ccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHh--hcc-------------CCCCCC
Q 016921 235 SGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKIC--DAY-------------YLPAWC 297 (380)
Q Consensus 235 ~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------------~~~~~~ 297 (380)
+++|++ ++.+++++++++|||||.+++.+........ ........+..+. ..+ .....+
T Consensus 117 ~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 117 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK----INHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp CGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHH----HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred eccccChhhHHHHHHHHHHhCCCCceeecccccccccch----hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 999984 7889999999999999999999865433221 1111111111110 000 011236
Q ss_pred CHHHHHHHHHhCCCcEEEE
Q 016921 298 STADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~ 316 (380)
+.+++.++|+++||+.|++
T Consensus 193 s~~~~~~~L~~aGF~~v~~ 211 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVEL 211 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcCCCceEE
Confidence 8999999999999998875
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.88 E-value=4.3e-22 Score=177.74 Aligned_cols=156 Identities=16% Similarity=0.138 Sum_probs=122.1
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
.....+++.+... +..+|||+|||+|.++..++......|+++|+|+.|++.|+++.... ++++|+++|+.+
T Consensus 80 ~~s~~fl~~l~~~-----~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~---~~~~~~~~d~~~ 151 (254)
T d1xtpa_ 80 EGSRNFIASLPGH-----GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM---PVGKFILASMET 151 (254)
T ss_dssp HHHHHHHHTSTTC-----CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS---SEEEEEESCGGG
T ss_pred HHHHHHHhhCCCC-----CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhcccccc---ccceeEEccccc
Confidence 3455666665544 37899999999999999988776678999999999999999876432 468999999999
Q ss_pred CCCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWC 297 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (380)
+++++++||+|++..+++|+++. .+++++++++|||||.+++.+......... .. .......+
T Consensus 152 ~~~~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~---~d------------~~d~~~~r 216 (254)
T d1xtpa_ 152 ATLPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL---VD------------KEDSSLTR 216 (254)
T ss_dssp CCCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEE---EE------------TTTTEEEB
T ss_pred cccCCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcce---ec------------ccCCceeC
Confidence 98888999999999999999875 488999999999999999988643321110 00 00000125
Q ss_pred CHHHHHHHHHhCCCcEEEEEe
Q 016921 298 STADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~ 318 (380)
+.+.+.++++++||++++.+.
T Consensus 217 s~~~~~~l~~~aGf~ii~~~~ 237 (254)
T d1xtpa_ 217 SDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp CHHHHHHHHHHHTCCEEEEEE
T ss_pred CHHHHHHHHHHcCCEEEEEEe
Confidence 789999999999999998764
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.87 E-value=1.2e-21 Score=174.94 Aligned_cols=171 Identities=18% Similarity=0.197 Sum_probs=130.1
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
...++..++... ..+|||||||+|.++..+++++ +.+++++|+ +.+++.+++++...++..+++++.+|+.+.
T Consensus 69 ~~~~~~~~d~~~-----~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~ 142 (253)
T d1tw3a2 69 FDAPAAAYDWTN-----VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP 142 (253)
T ss_dssp THHHHHHSCCTT-----CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred HHHHHhhcCCcc-----CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence 345566666554 7899999999999999999988 789999998 678999999999999989999999998763
Q ss_pred CCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHH-HHHHHhhccCCCCCC
Q 016921 221 PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQE-LLKKICDAYYLPAWC 297 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 297 (380)
. ..+||+|++..++||+++. .++|++++++|||||+|++.+........ ....... .+..+....+ ..+
T Consensus 143 -~-~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~i~e~~~~~~~~----~~~~~~~~dl~~~~~~~g--~~r 214 (253)
T d1tw3a2 143 -L-PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENS----FNEQFTELDLRMLVFLGG--ALR 214 (253)
T ss_dssp -C-SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGC----CSHHHHHHHHHHHHHHSC--CCC
T ss_pred -c-ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEEEEeccCCCCCc----chhHHHHhhHHHHhhCCC--cCC
Confidence 2 3579999999999999775 47899999999999999999864332211 1111100 0111111111 236
Q ss_pred CHHHHHHHHHhCCCcEEEEEecCCCcCCc
Q 016921 298 STADYVKLLQSLSLEDIKAEDWSQNVAPF 326 (380)
Q Consensus 298 ~~~~~~~ll~~aGf~~v~~~~~~~~~~~~ 326 (380)
+.++|.++++++||+++++..+..+..++
T Consensus 215 t~~e~~~ll~~AGf~~~~v~~~~~p~~~~ 243 (253)
T d1tw3a2 215 TREKWDGLAASAGLVVEEVRQLPSPTIPY 243 (253)
T ss_dssp BHHHHHHHHHHTTEEEEEEEEEECSSSSC
T ss_pred CHHHHHHHHHHCCCeEEEEEECCCCCCCc
Confidence 89999999999999999998877665443
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.87 E-value=1.1e-21 Score=171.97 Aligned_cols=147 Identities=12% Similarity=0.052 Sum_probs=114.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.+++.|+++.. .++.++.+|++++++ +++||+|++.++++|
T Consensus 21 ~~~VLDiGcG~G~~~~~l~~~-g~~v~giD~s~~~i~~a~~~~~-----~~~~~~~~~~~~~~~-~~~fD~I~~~~vleh 93 (225)
T d2p7ia1 21 PGNLLELGSFKGDFTSRLQEH-FNDITCVEASEEAISHAQGRLK-----DGITYIHSRFEDAQL-PRRYDNIVLTHVLEH 93 (225)
T ss_dssp SSCEEEESCTTSHHHHHHTTT-CSCEEEEESCHHHHHHHHHHSC-----SCEEEEESCGGGCCC-SSCEEEEEEESCGGG
T ss_pred CCcEEEEeCCCcHHHHHHHHc-CCeEEEEeCcHHHhhhhhcccc-----ccccccccccccccc-ccccccccccceeEe
Confidence 678999999999999999886 7899999999999999987642 479999999998875 589999999999999
Q ss_pred CCCHHHHHHHHH-HhcCCCcEEEEEeccCCCCCCCccccchHHHHHHH---------HHhhccCCCCCCCHHHHHHHHHh
Q 016921 239 MPDKSKFVSELA-RVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK---------KICDAYYLPAWCSTADYVKLLQS 308 (380)
Q Consensus 239 ~~~~~~~l~~~~-r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ll~~ 308 (380)
++|+..++.++. ++|||||.+++..+.... +......... .........+.++.+++.+++++
T Consensus 94 ~~d~~~~l~~i~~~~Lk~gG~l~i~~pn~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~ 166 (225)
T d2p7ia1 94 IDDPVALLKRINDDWLAEGGRLFLVCPNANA-------VSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASR 166 (225)
T ss_dssp CSSHHHHHHHHHHTTEEEEEEEEEEEECTTC-------HHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCceEEEEeCCccc-------HHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHH
Confidence 999999999998 789999999998743211 1000000000 00001112345799999999999
Q ss_pred CCCcEEEEEec
Q 016921 309 LSLEDIKAEDW 319 (380)
Q Consensus 309 aGf~~v~~~~~ 319 (380)
+||+++..+.+
T Consensus 167 ~Gf~i~~~~~~ 177 (225)
T d2p7ia1 167 AGLQVTYRSGI 177 (225)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCEEEEEEEE
Confidence 99999887643
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.84 E-value=1.9e-20 Score=169.50 Aligned_cols=158 Identities=19% Similarity=0.198 Sum_probs=117.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
++.+|||||||+|.++..+++.. +.+|+|+|+|+.+++.|+++....+. +++|.++|+.+++++ ++||+|++..+
T Consensus 27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~--~~~f~~~d~~~~~~~-~~fD~v~~~~~ 103 (281)
T d2gh1a1 27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY--DSEFLEGDATEIELN-DKYDIAICHAF 103 (281)
T ss_dssp SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS--EEEEEESCTTTCCCS-SCEEEEEEESC
T ss_pred CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc--ccccccccccccccc-CCceEEEEehh
Confidence 48899999999999999999865 57899999999999999999876653 799999999998875 67999999999
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCC-------Ccccc-c-hHHHHHHHHHhhccCCCCCCCHHHHHHHH
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAP-------SEESL-Q-PWEQELLKKICDAYYLPAWCSTADYVKLL 306 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~-------~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 306 (380)
++|++++..++++++++|||||.+++.+........ ....+ . ......+.......+.. .....++..+|
T Consensus 104 l~~~~d~~~~l~~~~~~LkpgG~lii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~l~~~l 182 (281)
T d2gh1a1 104 LLHMTTPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKD-GNIGMKIPIYL 182 (281)
T ss_dssp GGGCSSHHHHHHHHHHTEEEEEEEEEEECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCCC-TTGGGTHHHHH
T ss_pred hhcCCCHHHHHHHHHHHcCcCcEEEEEECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Confidence 999999999999999999999999998843111000 00000 0 01111222222211111 11235678899
Q ss_pred HhCCCcEEEEEec
Q 016921 307 QSLSLEDIKAEDW 319 (380)
Q Consensus 307 ~~aGf~~v~~~~~ 319 (380)
+++||+++++...
T Consensus 183 ~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 183 SELGVKNIECRVS 195 (281)
T ss_dssp HHTTCEEEEEEEC
T ss_pred HHcCCeEEEEEEe
Confidence 9999999987644
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.3e-20 Score=164.65 Aligned_cols=104 Identities=32% Similarity=0.509 Sum_probs=95.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++....+ .++.++++|+.++++++++||+|++..+++
T Consensus 37 ~~~~ILDiGcG~G~~~~~la~~-~~~v~giD~S~~~i~~ak~~~~~~~--~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~ 113 (226)
T d1ve3a1 37 KRGKVLDLACGVGGFSFLLEDY-GFEVVGVDISEDMIRKAREYAKSRE--SNVEFIVGDARKLSFEDKTFDYVIFIDSIV 113 (226)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTT--CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred CCCEEEEECCCcchhhhhHhhh-hcccccccccccchhhhhhhhcccc--ccccccccccccccccCcCceEEEEecchh
Confidence 3789999999999999999986 8899999999999999999988776 368899999999999999999999999999
Q ss_pred CCC--CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMP--DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~--~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|++ +..++++++.++|||||++++...
T Consensus 114 ~~~~~d~~~~l~~i~~~LkpgG~lii~~~ 142 (226)
T d1ve3a1 114 HFEPLELNQVFKEVRRVLKPSGKFIMYFT 142 (226)
T ss_dssp GCCHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCChhHHHHHHHHHHHHcCcCcEEEEEEc
Confidence 997 567899999999999999998764
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.84 E-value=5.3e-20 Score=157.94 Aligned_cols=137 Identities=23% Similarity=0.365 Sum_probs=108.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|..+..++++ +.+|+|+|+|+.|++.++++....++ +++.+...|+..+++ +++||+|++..+++|
T Consensus 31 ~grvLDiGcG~G~~~~~la~~-g~~v~gvD~s~~~l~~a~~~~~~~~~-~~~~~~~~d~~~~~~-~~~fD~I~~~~~~~~ 107 (198)
T d2i6ga1 31 PGRTLDLGCGNGRNSLYLAAN-GYDVTAWDKNPASMANLERIKAAEGL-DNLQTDLVDLNTLTF-DGEYDFILSTVVMMF 107 (198)
T ss_dssp SCEEEEETCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEECCTTTCCC-CCCEEEEEEESCGGG
T ss_pred CCcEEEECCCCCHHHHHHHHH-hhhhccccCcHHHHHHHHHHhhhccc-cchhhhheecccccc-cccccEEEEeeeeec
Confidence 569999999999999999987 89999999999999999999988887 479999999998875 689999999999999
Q ss_pred CCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE
Q 016921 239 MPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 239 ~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~ 316 (380)
+++ ..++++++.++|+|||++++..+......+ .....+..++..++.+++ +||+++..
T Consensus 108 ~~~~~~~~~l~~~~~~L~pgG~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~el~~~~--~~~~i~~~ 168 (198)
T d2i6ga1 108 LEAQTIPGLIANMQRCTKPGGYNLIVAAMDTPDFP-----------------CTVGFPFAFKEGELRRYY--EGWDMLKY 168 (198)
T ss_dssp SCTTHHHHHHHHHHHTEEEEEEEEEEEEBC--------------------------CCCCBCTTHHHHHT--TTSEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEecCCccCC-----------------CCCCCCCccCHHHHHHHh--CCCeEEEe
Confidence 964 468999999999999999998754322111 001111224556777777 58988765
Q ss_pred E
Q 016921 317 E 317 (380)
Q Consensus 317 ~ 317 (380)
.
T Consensus 169 ~ 169 (198)
T d2i6ga1 169 N 169 (198)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.84 E-value=1.1e-20 Score=168.19 Aligned_cols=140 Identities=26% Similarity=0.422 Sum_probs=111.7
Q ss_pred HHhccchhhHHHhhcccccccccCCCCCCCcccHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc
Q 016921 101 EFYDESSSLWEDIWGDHMHHGFYEPDSSVSVSDHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF 180 (380)
Q Consensus 101 ~~yd~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~ 180 (380)
++|+..++.|+.++....+. .......+..++......+ +.+|||||||+|..+..+++.
T Consensus 3 ~~~~~~a~~Yd~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~-----~~~iLDiGcGtG~~~~~l~~~- 62 (251)
T d1wzna1 3 ELYTLLAEYYDTIYRRRIER--------------VKAEIDFVEEIFKEDAKRE-----VRRVLDLACGTGIPTLELAER- 62 (251)
T ss_dssp GGGTTTGGGHHHHTHHHHHT--------------HHHHHHHHHHHHHHTCSSC-----CCEEEEETCTTCHHHHHHHHT-
T ss_pred chhHhhHHHHHHHHHhhhhh--------------HHHHHHHHHHHHHHhcCCC-----CCEEEEeCCCCCccchhhccc-
Confidence 46777777777665542211 1223446667777666544 789999999999999999987
Q ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec-cccCCC--CCHHHHHHHHHHhcCCCc
Q 016921 181 GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGEHM--PDKSKFVSELARVTAPAG 257 (380)
Q Consensus 181 ~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~~~--~~~~~~l~~~~r~LkpgG 257 (380)
+.+|+|+|+|+.|++.|++++...++ ++.++++|+++++++ ++||+|++. .+++|+ ++...+|++++++|||||
T Consensus 63 ~~~v~gvD~s~~mi~~a~~~~~~~~~--~i~~~~~d~~~l~~~-~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG 139 (251)
T d1wzna1 63 GYEVVGLDLHEEMLRVARRKAKERNL--KIEFLQGDVLEIAFK-NEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGG 139 (251)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTC--CCEEEESCGGGCCCC-SCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEE
T ss_pred ceEEEEEeeccccccccccccccccc--cchheehhhhhcccc-cccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCc
Confidence 88999999999999999999988764 699999999999876 689999986 466776 356789999999999999
Q ss_pred EEEEEe
Q 016921 258 TIIIVT 263 (380)
Q Consensus 258 ~l~~~~ 263 (380)
++++..
T Consensus 140 ~lii~~ 145 (251)
T d1wzna1 140 VFITDF 145 (251)
T ss_dssp EEEEEE
T ss_pred EEEEEe
Confidence 998854
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.83 E-value=7e-20 Score=163.37 Aligned_cols=168 Identities=21% Similarity=0.209 Sum_probs=124.8
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
..+++..+... ..+|||||||+|.++..+++++ +.+++++|+ +.+++.++++++..++.+++.++.+|+.+ +
T Consensus 71 ~~~~~~~d~~~-----~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~-~ 143 (256)
T d1qzza2 71 EAPADAYDWSA-----VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-P 143 (256)
T ss_dssp HHHHHTSCCTT-----CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-C
T ss_pred HHHHhcCCCcc-----CCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccc-c
Confidence 44555555443 7899999999999999999998 789999998 88999999999999988899999999876 4
Q ss_pred CCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCH
Q 016921 222 FPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCST 299 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (380)
.+ .+||+|++.+++|++++. .++|++++++|||||+|+|.+................. +. .-.....+ ..++.
T Consensus 144 ~p-~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~~~~~~~~-d~-~ml~~~~g--~~rt~ 218 (256)
T d1qzza2 144 LP-VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTLL-DL-RMLTFMGG--RVRTR 218 (256)
T ss_dssp CS-CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------HHHHHHH-HH-HHHHHHSC--CCCCH
T ss_pred cc-ccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCcccHHHHHHH-HH-HHHhhCCC--ccCCH
Confidence 44 469999999999999765 57899999999999999999864332211111111111 11 00111112 23689
Q ss_pred HHHHHHHHhCCCcEEEEEecCCC
Q 016921 300 ADYVKLLQSLSLEDIKAEDWSQN 322 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~~~~~~~ 322 (380)
++|.++++++||+++++......
T Consensus 219 ~e~~~ll~~AGf~~~~~~~~~~~ 241 (256)
T d1qzza2 219 DEVVDLAGSAGLALASERTSGST 241 (256)
T ss_dssp HHHHHHHHTTTEEEEEEEEECCS
T ss_pred HHHHHHHHHCCCceeEEEEeCCc
Confidence 99999999999999998776543
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.83 E-value=1.9e-20 Score=165.81 Aligned_cols=98 Identities=28% Similarity=0.391 Sum_probs=88.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec-cccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 237 (380)
+.+|||||||+|.++..+++. +.+|+|+|+|+.|++.|+++. . ..++.+|++++++++++||+|++. .+++
T Consensus 43 ~~~vLDiGcG~G~~~~~l~~~-~~~v~giD~s~~~l~~a~~~~----~---~~~~~~~~~~l~~~~~~fD~ii~~~~~~~ 114 (246)
T d2avna1 43 PCRVLDLGGGTGKWSLFLQER-GFEVVLVDPSKEMLEVAREKG----V---KNVVEAKAEDLPFPSGAFEAVLALGDVLS 114 (246)
T ss_dssp CCEEEEETCTTCHHHHHHHTT-TCEEEEEESCHHHHHHHHHHT----C---SCEEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred CCEEEEECCCCchhccccccc-ceEEEEeeccccccccccccc----c---cccccccccccccccccccceeeecchhh
Confidence 789999999999999999986 889999999999999998753 1 236789999999999999999985 5899
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|++|+.++++++.++|||||.+++...
T Consensus 115 ~~~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 115 YVENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp HCSCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 999999999999999999999999763
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.83 E-value=2.8e-20 Score=165.18 Aligned_cols=101 Identities=21% Similarity=0.293 Sum_probs=89.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec-cccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-ESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-~~l~ 237 (380)
+.+|||||||+|..+..+++. +.+|+|+|+|+.|++.|++++...++ +++|+++|+.++++ +++||+|+|. .+++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~-g~~v~GvD~S~~ml~~A~~~~~~~~~--~v~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 113 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPK-FKNTWAVDLSQEMLSEAENKFRSQGL--KPRLACQDISNLNI-NRKFDLITCCLDSTN 113 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGG-SSEEEEECSCHHHHHHHHHHHHHTTC--CCEEECCCGGGCCC-SCCEEEEEECTTGGG
T ss_pred CCeEEEEeCcCCHHHHHHHHh-CCccEeeccchhhhhhccccccccCc--cceeeccchhhhcc-cccccccceeeeeee
Confidence 679999999999999999987 78999999999999999999987775 69999999999875 4789999986 5777
Q ss_pred CCC---CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 238 HMP---DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+. +..+++++++++|||||.+++..
T Consensus 114 ~~~~~~~~~~~l~~~~~~LkpgG~~i~~~ 142 (246)
T d1y8ca_ 114 YIIDSDDLKKYFKAVSNHLKEGGVFIFDI 142 (246)
T ss_dssp GCCSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 775 45679999999999999998754
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=1.4e-18 Score=157.17 Aligned_cols=149 Identities=14% Similarity=0.152 Sum_probs=109.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE--EEcCCCC------CCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-------GAKCQGITLSPVQAQRANALAAARGLADKVSF--QVGDALQ------QPF 222 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-------~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~--~~~d~~~------~~~ 222 (380)
+..+|||||||+|.++..+++.. ...++|+|+|+.|++.+++++.......++.+ ...++++ .+.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK 119 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence 45689999999999988887653 24689999999999999999865443345544 4444332 245
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhcc---CCCCCCCH
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAY---YLPAWCST 299 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 299 (380)
++++||+|++.++++|++|+..++++++++|+|||.+++..+.... .....+....... ....+++.
T Consensus 120 ~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~~~~ 189 (280)
T d1jqea_ 120 ELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSS----------GWDKLWKKYGSRFPQDDLCQYITS 189 (280)
T ss_dssp SCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTS----------HHHHHHHHHGGGSCCCTTSCCCCH
T ss_pred CCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecCcc----------hHHHHHHHHHHhcCCCcccccCCH
Confidence 6799999999999999999999999999999999999998753211 1112222222222 22235788
Q ss_pred HHHHHHHHhCCCcEEEE
Q 016921 300 ADYVKLLQSLSLEDIKA 316 (380)
Q Consensus 300 ~~~~~ll~~aGf~~v~~ 316 (380)
+++.++|++.||..+..
T Consensus 190 ~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 190 DDLTQMLDNLGLKYECY 206 (280)
T ss_dssp HHHHHHHHHHTCCEEEE
T ss_pred HHHHHHHHHCCCceEEE
Confidence 99999999999986544
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.9e-20 Score=163.95 Aligned_cols=151 Identities=11% Similarity=-0.032 Sum_probs=109.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCC----------------------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADK---------------------------- 209 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~---------------------------- 209 (380)
++.+|||||||+|.++..++.....+|+|+|+|+.|++.|+++++..+....
T Consensus 51 ~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (257)
T d2a14a1 51 QGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA 130 (257)
T ss_dssp CEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence 4789999999999998877766445799999999999999999875432110
Q ss_pred e-EEEEcCC----CCCCCCCCCccEEEeccccCCCC----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHH
Q 016921 210 V-SFQVGDA----LQQPFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWE 280 (380)
Q Consensus 210 v-~~~~~d~----~~~~~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~ 280 (380)
+ .....+. ...+++.++||+|++.++++|+. +...+++++.++|||||.+++.++........
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~LkpGG~li~~~~~~~~~~~~-------- 202 (257)
T d2a14a1 131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKPGGHLVTTVTLRLPSYMV-------- 202 (257)
T ss_dssp EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEEEE--------
T ss_pred hhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCCCcEEEEEEeccccccee--------
Confidence 0 1111121 12356788999999999999995 45689999999999999999988643321100
Q ss_pred HHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCCCc
Q 016921 281 QELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQNV 323 (380)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~~~ 323 (380)
.........++.++++++|++|||++++++......
T Consensus 203 -------~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 238 (257)
T d2a14a1 203 -------GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSY 238 (257)
T ss_dssp -------TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred -------ccccccccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence 000011124689999999999999999887655443
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.78 E-value=6.8e-19 Score=150.36 Aligned_cols=149 Identities=15% Similarity=0.131 Sum_probs=112.8
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCC-----------CCCeEEE
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGL-----------ADKVSFQ 213 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~-----------~~~v~~~ 213 (380)
.+..+.+. ++.+|||+|||+|..+..|+++ |.+|+|+|+|+.|++.|+++++..+. ...+.|+
T Consensus 12 ~~~~l~~~-----~~~rvLd~GCG~G~~a~~la~~-G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (201)
T d1pjza_ 12 YWSSLNVV-----PGARVLVPLCGKSQDMSWLSGQ-GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIW 85 (201)
T ss_dssp HHHHHCCC-----TTCEEEETTTCCSHHHHHHHHH-CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEE
T ss_pred HHHHcCCC-----CCCEEEEecCcCCHHHHHHHHc-CCceEeecccHHHHHHHHHHhccccchhhhhhhhhcccccccee
Confidence 34445554 4999999999999999999998 99999999999999999998854422 2356789
Q ss_pred EcCCCCCC-CCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhc
Q 016921 214 VGDALQQP-FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDA 290 (380)
Q Consensus 214 ~~d~~~~~-~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (380)
++|+.+++ .....||+|++..+++|+.+ ...++++++++|||||.+++..+......+...
T Consensus 86 ~~d~~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~l~l~~~~~~~~~~~~p---------------- 149 (201)
T d1pjza_ 86 CGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACSGLLITLEYDQALLEGP---------------- 149 (201)
T ss_dssp EECCSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEEEEEEEESSCSSSSSSC----------------
T ss_pred cccccccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcEEEEEEcccccccCCCc----------------
Confidence 99998875 33478999999999999964 578999999999999999887765433221110
Q ss_pred cCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 291 YYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 291 ~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
+...+.+++++++. .+|++..++..
T Consensus 150 ---~~~~~~~el~~l~~-~~~~i~~~~~~ 174 (201)
T d1pjza_ 150 ---PFSVPQTWLHRVMS-GNWEVTKVGGQ 174 (201)
T ss_dssp ---CCCCCHHHHHHTSC-SSEEEEEEEES
T ss_pred ---cccCCHHHHHHHhC-CCcEEEEEEEe
Confidence 11246778887774 57876555443
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.77 E-value=1.2e-18 Score=155.10 Aligned_cols=107 Identities=23% Similarity=0.249 Sum_probs=93.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC-CCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF-PDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-~~~~fD~V~~~~~l 236 (380)
++.+|||||||+|..+..+++....+|+|+|+|+.|++.|+++....+...++.|.++|+...++ .+++||+|++.+++
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~l 103 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFSF 103 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESCG
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEccee
Confidence 48899999999999999998874468999999999999999999877776789999999987665 46789999999999
Q ss_pred CCCC----CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 237 EHMP----DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 237 ~~~~----~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+. +...+++++.++|||||++++..+
T Consensus 104 ~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~ 135 (252)
T d1ri5a_ 104 HYAFSTSESLDIAQRNIARHLRPGGYFIMTVP 135 (252)
T ss_dssp GGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred eecCCCHHHHHHHHHHHhceeCCCCEEEEEec
Confidence 9983 245799999999999999998753
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.75 E-value=7.5e-18 Score=147.10 Aligned_cols=146 Identities=13% Similarity=0.103 Sum_probs=114.2
Q ss_pred CCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccE
Q 016921 152 SEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDL 229 (380)
Q Consensus 152 ~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~ 229 (380)
...+..|+.+|||||||+|..+..+++.. +..|+|+|+|+.|++.+++++... +++.++..|..... +.+..+|+
T Consensus 68 ~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~v 144 (230)
T d1g8sa_ 68 KVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER---ENIIPILGDANKPQEYANIVEKV 144 (230)
T ss_dssp CCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC---TTEEEEECCTTCGGGGTTTCCCE
T ss_pred HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh---cccceEEEeeccCccccccccee
Confidence 34455679999999999999999999976 579999999999999999886543 47888998887753 45677888
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhC
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSL 309 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~a 309 (380)
+++...+++..+...++.++.+.|||||.+++.......... ... . ...++..+.|+++
T Consensus 145 ~~i~~~~~~~~~~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~----~~~---~--------------~~~~e~~~~L~~a 203 (230)
T d1g8sa_ 145 DVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIAIKARSIDVT----KDP---K--------------EIFKEQKEILEAG 203 (230)
T ss_dssp EEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEEEEGGGTCSS----SCH---H--------------HHHHHHHHHHHHH
T ss_pred EEeeccccchHHHHHHHHHHHHhcccCceEEEEeeccccCCC----CCH---H--------------HHHHHHHHHHHHc
Confidence 888888888889999999999999999999998753321110 000 0 0135677899999
Q ss_pred CCcEEEEEecCC
Q 016921 310 SLEDIKAEDWSQ 321 (380)
Q Consensus 310 Gf~~v~~~~~~~ 321 (380)
||++++..++..
T Consensus 204 GF~ive~idL~p 215 (230)
T d1g8sa_ 204 GFKIVDEVDIEP 215 (230)
T ss_dssp TEEEEEEEECTT
T ss_pred CCEEEEEecCCC
Confidence 999998877653
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=1e-17 Score=146.87 Aligned_cols=139 Identities=14% Similarity=0.172 Sum_probs=109.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcC----------------CCCCeEEEEcCCCCCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARG----------------LADKVSFQVGDALQQP 221 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~----------------~~~~v~~~~~d~~~~~ 221 (380)
++.+|||+|||+|..+..|++. |.+|+|||+|+.+++.|+++....+ ...+++++++|+.+++
T Consensus 45 ~~~rvLd~GCG~G~~a~~LA~~-G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~ 123 (229)
T d2bzga1 45 SGLRVFFPLCGKAVEMKWFADR-GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLP 123 (229)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT-TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGG
T ss_pred CCCEEEEeCCCCcHHHHHHHhC-CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhcc
Confidence 3889999999999999999997 9999999999999999988764321 1247899999998874
Q ss_pred -CCCCCccEEEeccccCCCC--CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 222 -FPDGQFDLVWSMESGEHMP--DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 222 -~~~~~fD~V~~~~~l~~~~--~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
...+.||+|+...+++|++ +...+++++.++|||||++++..+........ +-|...+
T Consensus 124 ~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~LkpgG~~~l~~~~~~~~~~~-------------------gpp~~~~ 184 (229)
T d2bzga1 124 RTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKHP-------------------GPPFYVP 184 (229)
T ss_dssp GSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEEEECCTTTCC-------------------CSSCCCC
T ss_pred ccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCCcceEEEEEcccCCCCCC-------------------CCCCCCC
Confidence 5578999999999999994 56889999999999999988887654322110 1122357
Q ss_pred HHHHHHHHHhCCCcEEEEE
Q 016921 299 TADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~ 317 (380)
.+++.+++.. +|++..++
T Consensus 185 ~~el~~lf~~-~~~i~~le 202 (229)
T d2bzga1 185 HAEIERLFGK-ICNIRCLE 202 (229)
T ss_dssp HHHHHHHHTT-TEEEEEEE
T ss_pred HHHHHHHhcC-CCEEEEEE
Confidence 8999999964 77665444
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=7e-18 Score=151.35 Aligned_cols=110 Identities=25% Similarity=0.349 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
...++..+....+. ++.+|||||||+|.++..+++.. +..++|+|+|+.|++.|+++. +++.|.++|
T Consensus 70 ~~~~~~~l~~~~~~------~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------~~~~~~~~d 137 (268)
T d1p91a_ 70 RDAIVAQLRERLDD------KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------PQVTFCVAS 137 (268)
T ss_dssp HHHHHHHHHHHSCT------TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC------TTSEEEECC
T ss_pred HHHHHHHHHHhcCC------CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc------ccccceeee
Confidence 34444445454432 37899999999999999999987 689999999999999988753 479999999
Q ss_pred CCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccC
Q 016921 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCH 266 (380)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~ 266 (380)
+.++|+++++||+|++.++++| ++++.|+|||||++++..+..
T Consensus 138 ~~~l~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 138 SHRLPFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWVITATPGP 180 (268)
T ss_dssp TTSCSBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEEEEEEECT
T ss_pred hhhccCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEEEEEeeCC
Confidence 9999999999999999988877 578999999999999998654
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.8e-17 Score=148.27 Aligned_cols=149 Identities=11% Similarity=-0.020 Sum_probs=106.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----------------------------
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD----------------------------- 208 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~----------------------------- 208 (380)
.+.+|||||||+|......+.....+|+|+|+|+.|++.+++++.+.+..-
T Consensus 54 ~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (263)
T d2g72a1 54 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR 133 (263)
T ss_dssp CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred CCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence 488999999999988766665556799999999999999998775432110
Q ss_pred CeEEEEcCCCCC------CCCCCCccEEEeccccCCCC----CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccch
Q 016921 209 KVSFQVGDALQQ------PFPDGQFDLVWSMESGEHMP----DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQP 278 (380)
Q Consensus 209 ~v~~~~~d~~~~------~~~~~~fD~V~~~~~l~~~~----~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~ 278 (380)
...+...|+... +.+.++||+|++.++++|+. +...++++++++|||||.|++.+..........
T Consensus 134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkPGG~li~~~~~~~~~~~~~----- 208 (263)
T d2g72a1 134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGALEESWYLAG----- 208 (263)
T ss_dssp EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEEESCCEEEET-----
T ss_pred hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCCCCEEEEecccCCcccccC-----
Confidence 012344565432 24457899999999999984 457899999999999999999875322111000
Q ss_pred HHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEEecCC
Q 016921 279 WEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAEDWSQ 321 (380)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~~~ 321 (380)
...+ ....++.+++.++|+++||++++.+....
T Consensus 209 ---------~~~~-~~~~~t~e~v~~~l~~aGf~v~~~~~~~~ 241 (263)
T d2g72a1 209 ---------EARL-TVVPVSEEEVREALVRSGYKVRDLRTYIM 241 (263)
T ss_dssp ---------TEEE-ECCCCCHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred ---------Cccc-ccCCCCHHHHHHHHHHCCCeEEEEEEeec
Confidence 0000 01236899999999999999998765443
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.1e-18 Score=153.17 Aligned_cols=119 Identities=19% Similarity=0.144 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD 216 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d 216 (380)
|...+.+.+...+. . ++.+|||||||+|..+..+++..+.+|+|||+|+.+++.|+++....+ .++.++..|
T Consensus 38 w~~~~~~~la~~~~-~-----~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~--~~~~~~~~~ 109 (229)
T d1zx0a1 38 WETPYMHALAAAAS-S-----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT--HKVIPLKGL 109 (229)
T ss_dssp GGHHHHHHHHHHHT-T-----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS--SEEEEEESC
T ss_pred HHHHHHHHHHHhhc-c-----CCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcc--ccccccccc
Confidence 33444445544443 2 388999999999999999998655789999999999999999886654 467888887
Q ss_pred CCCC--CCCCCCccEEE-----eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 217 ALQQ--PFPDGQFDLVW-----SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~~~--~~~~~~fD~V~-----~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+... ++++++||.|+ +...++|+.++..++++++|+|||||+|++.+
T Consensus 110 ~~~~~~~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 110 WEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp HHHHGGGSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccccccccceeecccccccccccccCHHHHHHHHHHHcCCCcEEEEEe
Confidence 6543 56788999887 46778888899999999999999999998744
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.73 E-value=1.1e-17 Score=141.67 Aligned_cols=112 Identities=24% Similarity=0.328 Sum_probs=98.1
Q ss_pred HHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC
Q 016921 143 EETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF 222 (380)
Q Consensus 143 ~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~ 222 (380)
..++..+.+.+ +.+|||||||+|.++..+++. +.+|+|+|+++.+++.|+++++..++.++++++++|+.+...
T Consensus 23 ~~il~~l~~~~-----g~~VLDiGcGsG~~s~~lA~~-~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~ 96 (186)
T d1l3ia_ 23 CLIMCLAEPGK-----NDVAVDVGCGTGGVTLELAGR-VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALC 96 (186)
T ss_dssp HHHHHHHCCCT-----TCEEEEESCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHT
T ss_pred HHHHHhcCCCC-----CCEEEEEECCeEccccccccc-ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhccc
Confidence 44555666654 999999999999999999886 679999999999999999999999998899999999988776
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+...||.|++....+ +...+++.+.+.|||||++++..
T Consensus 97 ~~~~~D~v~~~~~~~---~~~~~~~~~~~~LkpgG~lvi~~ 134 (186)
T d1l3ia_ 97 KIPDIDIAVVGGSGG---ELQEILRIIKDKLKPGGRIIVTA 134 (186)
T ss_dssp TSCCEEEEEESCCTT---CHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccCCcCEEEEeCccc---cchHHHHHHHHHhCcCCEEEEEe
Confidence 778999999987654 45788999999999999998875
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=2e-17 Score=146.20 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=102.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++. +++|+|+|+|+.+++.|+++++.+++ ++.+.++|+.+ .++.++||+|+++...+
T Consensus 120 ~g~~VLDiGcGsG~l~i~aa~~-g~~V~gvDis~~av~~A~~na~~n~~--~~~~~~~d~~~-~~~~~~fD~V~ani~~~ 195 (254)
T d2nxca1 120 PGDKVLDLGTGSGVLAIAAEKL-GGKALGVDIDPMVLPQAEANAKRNGV--RPRFLEGSLEA-ALPFGPFDLLVANLYAE 195 (254)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT-TCEEEEEESCGGGHHHHHHHHHHTTC--CCEEEESCHHH-HGGGCCEEEEEEECCHH
T ss_pred ccCEEEEcccchhHHHHHHHhc-CCEEEEEECChHHHHHHHHHHHHcCC--ceeEEeccccc-cccccccchhhhccccc
Confidence 4899999999999999988775 89999999999999999999998887 46788998765 34578999999864332
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
....++.++.++|||||+++++++.. ...+.+.+.++++||.+++..
T Consensus 196 ---~l~~l~~~~~~~LkpGG~lilSgil~------------------------------~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 196 ---LHAALAPRYREALVPGGRALLTGILK------------------------------DRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp ---HHHHHHHHHHHHEEEEEEEEEEEEEG------------------------------GGHHHHHHHHHHTTCEEEEEE
T ss_pred ---cHHHHHHHHHHhcCCCcEEEEEecch------------------------------hhHHHHHHHHHHCCCEEEEEE
Confidence 35678899999999999999976421 124678889999999988765
Q ss_pred e
Q 016921 318 D 318 (380)
Q Consensus 318 ~ 318 (380)
.
T Consensus 243 ~ 243 (254)
T d2nxca1 243 A 243 (254)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.69 E-value=2.1e-16 Score=135.93 Aligned_cols=107 Identities=13% Similarity=0.065 Sum_probs=88.9
Q ss_pred CCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEe-
Q 016921 155 PTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWS- 232 (380)
Q Consensus 155 ~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~- 232 (380)
+.+|+.+|||||||+|..+..+++.. ..+|+|+|+|+.|++.++++++.. +++.++..|+...+.....+|.+.+
T Consensus 53 ~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~---~ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 53 KLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER---NNIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC---SSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc---CCceEEEeeccCccccccccceEEEE
Confidence 44569999999999999999999977 469999999999999999998775 4799999999886544444444432
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+.|..+...++++++++|||||++++.+.
T Consensus 130 ~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 130 YQDIAQKNQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp EECCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EecccChhhHHHHHHHHHHHhccCCeEEEEEE
Confidence 34567777888999999999999999999874
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.69 E-value=5.1e-17 Score=142.93 Aligned_cols=134 Identities=15% Similarity=0.179 Sum_probs=106.9
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP 221 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 221 (380)
.++..+++++ +.+|||+|||+|.++..+++.. ..+|+++|+++++++.|+++++..+...++++..+|+.+.
T Consensus 76 ~Ii~~l~i~p-----G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~- 149 (250)
T d1yb2a1 76 YIIMRCGLRP-----GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF- 149 (250)
T ss_dssp -----CCCCT-----TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC-
T ss_pred HHHHHcCCCC-----cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc-
Confidence 3556666665 9999999999999999999875 4699999999999999999998876678999999999875
Q ss_pred CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHH
Q 016921 222 FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTAD 301 (380)
Q Consensus 222 ~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (380)
++++.||.|++ +++++..++.++.++|||||++++...+ . . ....
T Consensus 150 ~~~~~fD~V~l-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~-------i--------~---------------Qv~~ 194 (250)
T d1yb2a1 150 ISDQMYDAVIA-----DIPDPWNHVQKIASMMKPGSVATFYLPN-------F--------D---------------QSEK 194 (250)
T ss_dssp CCSCCEEEEEE-----CCSCGGGSHHHHHHTEEEEEEEEEEESS-------H--------H---------------HHHH
T ss_pred cccceeeeeee-----cCCchHHHHHHHHHhcCCCceEEEEeCC-------c--------C---------------hHHH
Confidence 46789999986 5678889999999999999999986521 0 0 0234
Q ss_pred HHHHHHhCCCcEEEEEe
Q 016921 302 YVKLLQSLSLEDIKAED 318 (380)
Q Consensus 302 ~~~ll~~aGf~~v~~~~ 318 (380)
..+.|+++||..+++.+
T Consensus 195 ~~~~l~~~gf~~i~~~E 211 (250)
T d1yb2a1 195 TVLSLSASGMHHLETVE 211 (250)
T ss_dssp HHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 55677889998877654
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.69 E-value=9e-17 Score=142.22 Aligned_cols=113 Identities=15% Similarity=0.217 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc--CCCCCeEEEEcC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR--GLADKVSFQVGD 216 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~--~~~~~v~~~~~d 216 (380)
-+..++..+.+.+ +.+|||+|||+|.++..|++.. ..+|+++|+++++++.|++++... +...++.+.++|
T Consensus 84 D~s~Ii~~l~i~P-----G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d 158 (264)
T d1i9ga_ 84 DAAQIVHEGDIFP-----GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSD 158 (264)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSC
T ss_pred HHHHHHHHhCCCC-----CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecc
Confidence 3556677777765 9999999999999999999986 469999999999999999988764 455799999999
Q ss_pred CCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 217 ALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 217 ~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+.++++++||.|++ +++++..++.++.++|||||++++..
T Consensus 159 ~~~~~~~~~~fDaV~l-----dlp~P~~~l~~~~~~LkpGG~lv~~~ 200 (264)
T d1i9ga_ 159 LADSELPDGSVDRAVL-----DMLAPWEVLDAVSRLLVAGGVLMVYV 200 (264)
T ss_dssp GGGCCCCTTCEEEEEE-----ESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred cccccccCCCcceEEE-----ecCCHHHHHHHHHhccCCCCEEEEEe
Confidence 9988888999999986 67999999999999999999999876
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=1.7e-16 Score=135.20 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=95.5
Q ss_pred HHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCCCCC
Q 016921 145 TLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQPFP 223 (380)
Q Consensus 145 ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~~~~ 223 (380)
+++.+.+.+ +.+|||+|||+|.++..+++. +.+|+++|+|+.+++.++++++..++.. ++++..+|..+ +++
T Consensus 44 Li~~l~~~~-----~~~VLDiGcG~G~~~~~la~~-~~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~ 116 (194)
T d1dusa_ 44 LVENVVVDK-----DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVK 116 (194)
T ss_dssp HHHHCCCCT-----TCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCT
T ss_pred HHHhCCcCC-----CCeEEEEeecCChhHHHHHhh-ccccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhc
Confidence 455555543 899999999999999999886 7899999999999999999998887753 68999999877 567
Q ss_pred CCCccEEEeccccCCCCC-HHHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEHMPD-KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~-~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+++||+|++...+++..+ ...+++++.++|||||.+++..
T Consensus 117 ~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~i~~ 157 (194)
T d1dusa_ 117 DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWVVI 157 (194)
T ss_dssp TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEEEEE
Confidence 889999999988877655 3678999999999999988754
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.68 E-value=1.2e-16 Score=138.13 Aligned_cols=111 Identities=14% Similarity=0.275 Sum_probs=96.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
++..+++.+.+++ +.+|||||||+|.++..+++.. ...|+++|+++.+++.|+++++..++ .++.++++|+.
T Consensus 63 ~~a~~l~~l~l~~-----g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~-~n~~~~~~d~~ 136 (213)
T d1dl5a1 63 LMALFMEWVGLDK-----GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGI-ENVIFVCGDGY 136 (213)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGG
T ss_pred hhHHHHHhhhccc-----cceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcc-cccccccCchH
Confidence 5667788888775 9999999999999999999876 46899999999999999999988877 58999999998
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+....+++||+|++..+++++++ ++.+.|||||+|++..
T Consensus 137 ~~~~~~~~fD~I~~~~~~~~~p~------~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 137 YGVPEFSPYDVIFVTVGVDEVPE------TWFTQLKEGGRVIVPI 175 (213)
T ss_dssp GCCGGGCCEEEEEECSBBSCCCH------HHHHHEEEEEEEEEEB
T ss_pred HccccccchhhhhhhccHHHhHH------HHHHhcCCCcEEEEEE
Confidence 87666789999999999998864 4678899999998854
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=2.3e-16 Score=140.34 Aligned_cols=137 Identities=20% Similarity=0.251 Sum_probs=113.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
-+..++..+++.+ +.+|||+|||+|.++..+++.. +++|+++|+++++++.|+++++..++..++.+...|+.
T Consensus 91 d~~~Ii~~l~i~p-----G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~ 165 (266)
T d1o54a_ 91 DSSFIAMMLDVKE-----GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDIS 165 (266)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGG
T ss_pred HHHHHHHhhCCCC-----CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccc
Confidence 3456677888776 9999999999999999999876 57999999999999999999999998889999999875
Q ss_pred CCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCC
Q 016921 219 QQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCS 298 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (380)
. .++...||.|+. +++++..+++++.++|||||+|++..++. . .
T Consensus 166 ~-~~~~~~~D~V~~-----d~p~p~~~l~~~~~~LKpGG~lv~~~P~~---------------~---------------Q 209 (266)
T d1o54a_ 166 E-GFDEKDVDALFL-----DVPDPWNYIDKCWEALKGGGRFATVCPTT---------------N---------------Q 209 (266)
T ss_dssp G-CCSCCSEEEEEE-----CCSCGGGTHHHHHHHEEEEEEEEEEESSH---------------H---------------H
T ss_pred c-cccccceeeeEe-----cCCCHHHHHHHHHhhcCCCCEEEEEeCcc---------------c---------------H
Confidence 4 345678998864 77899999999999999999999876310 0 1
Q ss_pred HHHHHHHHHhCCCcEEEEEe
Q 016921 299 TADYVKLLQSLSLEDIKAED 318 (380)
Q Consensus 299 ~~~~~~ll~~aGf~~v~~~~ 318 (380)
.+++.+.|++.||.++++.+
T Consensus 210 v~~~~~~l~~~gF~~i~~~E 229 (266)
T d1o54a_ 210 VQETLKKLQELPFIRIEVWE 229 (266)
T ss_dssp HHHHHHHHHHSSEEEEEEEC
T ss_pred HHHHHHHHHHCCceeEEEEE
Confidence 24566788899999887654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.64 E-value=9e-16 Score=131.13 Aligned_cols=104 Identities=22% Similarity=0.187 Sum_probs=93.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
.-.|||||||+|.++..+|+.. +..++|+|+++.++..|.+++.+.++ .|+.++.+|+..+. ++++++|.|++.+.
T Consensus 30 ~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l-~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 30 NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEA-QNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCC-SSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhc-cCchhcccchhhhhcccCchhhhccccccc
Confidence 4579999999999999999987 78999999999999999999999988 58999999998864 78899999999888
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..|.... ..++++++++|||||.|.+.+
T Consensus 109 ~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 8776543 479999999999999998875
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=2.7e-16 Score=144.78 Aligned_cols=120 Identities=14% Similarity=0.228 Sum_probs=98.4
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHc-------CC-CCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAAR-------GL-ADK 209 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~-------~~-~~~ 209 (380)
...+.++++.+.+++ +.+|||||||+|..+..++...+ .+++|+|+|+.+++.|++..++. |. ..+
T Consensus 137 ~~~~~~~~~~~~l~~-----~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~ 211 (328)
T d1nw3a_ 137 FDLVAQMIDEIKMTD-----DDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAE 211 (328)
T ss_dssp HHHHHHHHHHSCCCT-----TCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHcCCCC-----CCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCc
Confidence 356778888888775 99999999999999999998875 47999999999999998876542 22 357
Q ss_pred eEEEEcCCCCCCCCCCCc--cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 210 VSFQVGDALQQPFPDGQF--DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 210 v~~~~~d~~~~~~~~~~f--D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.|+++|+.+.++.+..+ |+|+ ...+.|.++....+.++.+.|||||++++.+.
T Consensus 212 i~~~~gd~~~~~~~~~~~~advi~-~~~~~f~~~~~~~l~e~~r~LKpGg~iv~~~~ 267 (328)
T d1nw3a_ 212 YTLERGDFLSEEWRERIANTSVIF-VNNFAFGPEVDHQLKERFANMKEGGRIVSSKP 267 (328)
T ss_dssp EEEEECCTTSHHHHHHHHHCSEEE-ECCTTTCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred eEEEECcccccccccccCcceEEE-EcceecchHHHHHHHHHHHhCCCCcEEEEecc
Confidence 999999999987666555 4555 45667778889999999999999999998653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.61 E-value=2e-15 Score=136.88 Aligned_cols=105 Identities=24% Similarity=0.287 Sum_probs=83.7
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC---CeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD---KVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~---~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
+.+|||||||+|..+..|++. |.+|+|+|+|+.|++.|+++....+... ...+..+++..++ ...++||+|++
T Consensus 57 ~~~vLD~GcG~G~~~~~la~~-g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~ 135 (292)
T d1xvaa_ 57 CHRVLDVACGTGVDSIMLVEE-GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVIC 135 (292)
T ss_dssp CCEEEESSCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEE
T ss_pred CCEEEEecCCCcHHHHHHHHc-CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEEEE
Confidence 679999999999999999987 8899999999999999999887665421 2345555554321 13578999997
Q ss_pred c-cccCCCCC-------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 M-ESGEHMPD-------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~-~~l~~~~~-------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. .+++|+++ ...++++++++|||||.|++...
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 175 (292)
T d1xvaa_ 136 LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHR 175 (292)
T ss_dssp CSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred ecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeec
Confidence 6 48888854 45799999999999999998653
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.61 E-value=1.1e-14 Score=127.76 Aligned_cols=158 Identities=18% Similarity=0.196 Sum_probs=112.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
....+++....- ....+|||||||+|.++..+++++ +.+++..|+ |..++ ..+..++++++.+|+.+
T Consensus 68 ~~~~l~~~~~~f----~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~ri~~~~gd~~~ 135 (244)
T d1fp1d2 68 EMKRMLEIYTGF----EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIE-------NAPPLSGIEHVGGDMFA 135 (244)
T ss_dssp HHHHHHHHCCTT----TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCCTTEEEEECCTTT
T ss_pred HHHHHHHhcccc----cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhh-------ccCCCCCeEEecCCccc
Confidence 445556555421 236899999999999999999998 789999998 43332 23445799999999876
Q ss_pred CCCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHH--HHhhccCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLK--KICDAYYLPA 295 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 295 (380)
+.| ..|+|++..++|+++|. ..+|+++++.|+|||+|+|.+...+....... .......+. -.....+.
T Consensus 136 -~~p--~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~--~~~~~~~~d~~m~~~~~g~-- 208 (244)
T d1fp1d2 136 -SVP--QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSE--ESKLVSTLDNLMFITVGGR-- 208 (244)
T ss_dssp -CCC--CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSH--HHHHHHHHHHHHHHHHSCC--
T ss_pred -ccc--cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCch--HHHHHHHHHHHHHhhCCCc--
Confidence 344 45999999999999764 57899999999999999999976543221111 110111111 11111222
Q ss_pred CCCHHHHHHHHHhCCCcEEEEE
Q 016921 296 WCSTADYVKLLQSLSLEDIKAE 317 (380)
Q Consensus 296 ~~~~~~~~~ll~~aGf~~v~~~ 317 (380)
.+|.++|.++|++|||+.+++.
T Consensus 209 ert~~e~~~ll~~AGF~~v~v~ 230 (244)
T d1fp1d2 209 ERTEKQYEKLSKLSGFSKFQVA 230 (244)
T ss_dssp CEEHHHHHHHHHHTTCSEEEEE
T ss_pred CCCHHHHHHHHHHcCCCceEEE
Confidence 3689999999999999999875
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.4e-15 Score=129.61 Aligned_cols=114 Identities=18% Similarity=0.213 Sum_probs=93.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCC----CCCeEEEE
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGL----ADKVSFQV 214 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~----~~~v~~~~ 214 (380)
++..+++.+...- +++.+|||||||+|..+..+++.. ..+|+++|+++++++.|++++++.++ ..++.+..
T Consensus 62 ~~a~~le~L~~~l---~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~ 138 (224)
T d1i1na_ 62 MHAYALELLFDQL---HEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVV 138 (224)
T ss_dssp HHHHHHHHTTTTS---CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEE
T ss_pred HHHHHHHHHhhcc---CCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEE
Confidence 4556666663211 359999999999999999998865 46999999999999999999877654 25789999
Q ss_pred cCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 215 GDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 215 ~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|....+.++++||+|++..+++++++ .+.+.|||||+|++..
T Consensus 139 gD~~~~~~~~~~fD~I~~~~~~~~ip~------~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 139 GDGRMGYAEEAPYDAIHVGAAAPVVPQ------ALIDQLKPGGRLILPV 181 (224)
T ss_dssp SCGGGCCGGGCCEEEEEECSBBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred eecccccchhhhhhhhhhhcchhhcCH------HHHhhcCCCcEEEEEE
Confidence 999887767789999999999998764 5788999999999854
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-14 Score=132.29 Aligned_cols=112 Identities=18% Similarity=0.196 Sum_probs=92.0
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc----------CCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAAR----------GLADK 209 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~----------~~~~~ 209 (380)
+..++..+++.+ +.+|||+|||+|.++..|++.. ..+|+++|+++++++.|+++++.. +.+.+
T Consensus 87 ~~~Il~~l~i~p-----G~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~n 161 (324)
T d2b25a1 87 INMILSMMDINP-----GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDN 161 (324)
T ss_dssp HHHHHHHHTCCT-----TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCC
T ss_pred HHHHHHHhCCCC-----CCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence 456677777775 9999999999999999999976 469999999999999999998753 34578
Q ss_pred eEEEEcCCCCCC--CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 210 VSFQVGDALQQP--FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 210 v~~~~~d~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+.+.|+.+.. +++..||.|++ .++++..++.++.++|||||+|++..
T Consensus 162 v~~~~~di~~~~~~~~~~~fD~V~L-----D~p~P~~~l~~~~~~LKpGG~lv~~~ 212 (324)
T d2b25a1 162 VDFIHKDISGATEDIKSLTFDAVAL-----DMLNPHVTLPVFYPHLKHGGVCAVYV 212 (324)
T ss_dssp EEEEESCTTCCC-------EEEEEE-----CSSSTTTTHHHHGGGEEEEEEEEEEE
T ss_pred eeEEecchhhcccccCCCCcceEee-----cCcCHHHHHHHHHHhccCCCEEEEEe
Confidence 999999988753 45678999986 46778889999999999999999865
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.58 E-value=1.8e-14 Score=122.94 Aligned_cols=104 Identities=21% Similarity=0.249 Sum_probs=90.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--CCCCCccEEEeccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--FPDGQFDLVWSMES 235 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~~~~fD~V~~~~~ 235 (380)
...|||||||+|.++..+|+.. ...++|+|+++.++..|.+++...++ .|+.++.+|+..+. +++.++|.|++.+.
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l-~Ni~~~~~da~~l~~~~~~~~~~~i~i~fP 110 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGV-PNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 110 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCC-SSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhcc-ccceeeecCHHHHhhhccCCceehhccccc
Confidence 4579999999999999999988 78999999999999999999998888 58999999998864 67899999998766
Q ss_pred cCCCCCH--------HHHHHHHHHhcCCCcEEEEEe
Q 016921 236 GEHMPDK--------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~--------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-.+.... ..+++.+.++|||||.|.+.+
T Consensus 111 dPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 111 DPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5554332 589999999999999998865
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.56 E-value=4.1e-14 Score=122.53 Aligned_cols=109 Identities=17% Similarity=0.198 Sum_probs=88.7
Q ss_pred CCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC---CCCCC
Q 016921 151 VSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ---PFPDG 225 (380)
Q Consensus 151 ~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~---~~~~~ 225 (380)
+......|+.+|||+|||+|..+..+++.. ..+|+|+|+++.|++.++++++.. .++..+..|+... +....
T Consensus 66 l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~---~~~~~i~~d~~~~~~~~~~~~ 142 (227)
T d1g8aa_ 66 LKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER---RNIVPILGDATKPEEYRALVP 142 (227)
T ss_dssp CCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC---TTEEEEECCTTCGGGGTTTCC
T ss_pred ccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc---CCceEEEEECCCccccccccc
Confidence 344445679999999999999999999986 479999999999999999887544 4688888888653 33446
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|+|++ .+.+..+...+++++.+.|||||+++++..
T Consensus 143 ~vD~i~~--d~~~~~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 143 KVDVIFE--DVAQPTQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CEEEEEE--CCCSTTHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceEEEEE--EccccchHHHHHHHHHHhcccCCeEEEEEE
Confidence 7888876 455666788899999999999999999764
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=2.9e-14 Score=131.16 Aligned_cols=101 Identities=25% Similarity=0.331 Sum_probs=88.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++....+|+++|.|+ ++..|++.....+...++.++.+|+.++++++++||+|++..+.++
T Consensus 39 ~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~~ 117 (328)
T d1g6q1_ 39 DKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGYF 117 (328)
T ss_dssp TCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBTT
T ss_pred cCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEeccee
Confidence 889999999999999988886446899999996 6788999999999988999999999999988999999998665554
Q ss_pred C---CCHHHHHHHHHHhcCCCcEEE
Q 016921 239 M---PDKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~ 260 (380)
+ .....++....++|||||.++
T Consensus 118 ~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 118 LLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eccchhHHHHHHHHHhccCCCeEEE
Confidence 4 567889999999999999885
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.54 E-value=2e-14 Score=124.15 Aligned_cols=107 Identities=15% Similarity=0.160 Sum_probs=89.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
....+++.+.+++ +.+|||||||+|.++..+++. +.+|+++|+++.+.+.|+++.... .++.++.+|....
T Consensus 58 ~~a~ml~~L~l~~-----g~~VLdIG~GsGy~ta~La~l-~~~V~aiE~~~~~~~~A~~~~~~~---~nv~~~~~d~~~g 128 (224)
T d1vbfa_ 58 LGIFMLDELDLHK-----GQKVLEIGTGIGYYTALIAEI-VDKVVSVEINEKMYNYASKLLSYY---NNIKLILGDGTLG 128 (224)
T ss_dssp HHHHHHHHTTCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTC---SSEEEEESCGGGC
T ss_pred hHHHHHHHhhhcc-----cceEEEecCCCCHHHHHHHHH-hcccccccccHHHHHHHHHHHhcc---cccccccCchhhc
Confidence 3445677777765 999999999999999998886 789999999999999999877543 5899999998765
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
..+.++||.|++..++.++++ .+.+.|||||+|++.
T Consensus 129 ~~~~~pfD~Iiv~~a~~~ip~------~l~~qLk~GGrLV~p 164 (224)
T d1vbfa_ 129 YEEEKPYDRVVVWATAPTLLC------KPYEQLKEGGIMILP 164 (224)
T ss_dssp CGGGCCEEEEEESSBBSSCCH------HHHHTEEEEEEEEEE
T ss_pred chhhhhHHHHHhhcchhhhhH------HHHHhcCCCCEEEEE
Confidence 445688999999999988764 467889999999885
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.53 E-value=2.9e-14 Score=122.28 Aligned_cols=111 Identities=20% Similarity=0.310 Sum_probs=96.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++..+++.+.+++ +.+|||||||+|..+..+++..+.+|+++|.++.+++.|++++...++ .|+.++++|....
T Consensus 66 ~~a~ml~~L~l~~-----g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~-~nv~~~~gd~~~g 139 (215)
T d1jg1a_ 66 MVAIMLEIANLKP-----GMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGV-KNVHVILGDGSKG 139 (215)
T ss_dssp HHHHHHHHHTCCT-----TCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTC-CSEEEEESCGGGC
T ss_pred hHHHHHHhhccCc-----cceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCC-ceeEEEECccccC
Confidence 5567777777765 999999999999999999986677899999999999999999999887 5899999998876
Q ss_pred CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 221 PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+.++||.|++..++.++++. +.+.|||||+|++..
T Consensus 140 ~~~~~pfD~Iiv~~a~~~ip~~------l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 140 FPPKAPYDVIIVTAGAPKIPEP------LIEQLKIGGKLIIPV 176 (215)
T ss_dssp CGGGCCEEEEEECSBBSSCCHH------HHHTEEEEEEEEEEE
T ss_pred CcccCcceeEEeecccccCCHH------HHHhcCCCCEEEEEE
Confidence 5567899999999999887653 667899999998854
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3e-14 Score=130.39 Aligned_cols=102 Identities=25% Similarity=0.280 Sum_probs=88.2
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+.+|||||||+|.++..+++....+|+|+|.|+. ...+++.....++.+++.++++|+.+++++.++||+|++....++
T Consensus 34 ~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~~ 112 (316)
T d1oria_ 34 DKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGYC 112 (316)
T ss_dssp TCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBBT
T ss_pred cCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeeee
Confidence 8899999999999999998863468999999975 467777788888888999999999999988899999998766655
Q ss_pred C---CCHHHHHHHHHHhcCCCcEEEE
Q 016921 239 M---PDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 239 ~---~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
+ .....++..+.++|||||.++-
T Consensus 113 l~~e~~~~~~l~~~~r~Lkp~G~iiP 138 (316)
T d1oria_ 113 LFYESMLNTVLHARDKWLAPDGLIFP 138 (316)
T ss_dssp BTBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred eccHHHHHHHHHHHHhcCCCCeEEEe
Confidence 5 3578899999999999999874
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.50 E-value=7.7e-13 Score=116.11 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=110.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
....++....... ...+|||||||+|.++..+++++ +.++++.|+.+. ++ .....+++.+..+|+.+
T Consensus 68 ~~~~~~~~~~~~~----~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~-------~~~~~~r~~~~~~d~~~ 135 (243)
T d1kyza2 68 TMKKILETYTGFE----GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE-------DAPSYPGVEHVGGDMFV 135 (243)
T ss_dssp HHHHHHHHCCTTS----SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT-------TCCCCTTEEEEECCTTT
T ss_pred HHHHHHHhccccc----CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh-------hcccCCceEEecccccc
Confidence 3445555544321 35789999999999999999998 789999999553 22 23445789999999876
Q ss_pred CCCCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccc-cchHHHHHHHHHhhccCCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEES-LQPWEQELLKKICDAYYLPAW 296 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 296 (380)
+.|. .|.++...++|++++ ...+|+++++.|+|||++++.+............ ......+..--.....+. -
T Consensus 136 -~~P~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~li~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~--e 210 (243)
T d1kyza2 136 -SIPK--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGK--E 210 (243)
T ss_dssp -CCCC--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEEEEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCC--C
T ss_pred -cCCC--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEEEEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCC--c
Confidence 3443 577888899998865 4689999999999999999998754332211100 000011111111111122 2
Q ss_pred CCHHHHHHHHHhCCCcEEEEEec
Q 016921 297 CSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 297 ~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
++.++|+++|++|||+++++...
T Consensus 211 rt~~e~~~ll~~AGf~~vkv~~~ 233 (243)
T d1kyza2 211 RTQKEFEDLAKGAGFQGFKVHCN 233 (243)
T ss_dssp EEHHHHHHHHHHHCCSCEEEEEE
T ss_pred CCHHHHHHHHHHcCCCcEEEEEe
Confidence 68999999999999999987643
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.50 E-value=2.5e-13 Score=120.53 Aligned_cols=140 Identities=15% Similarity=0.232 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+++..+.... ..+.+|||+|||+|..+..++... ..+|+++|+|+.+++.|++++...++ .+++|+++|..+
T Consensus 97 lv~~~l~~~~------~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~-~~v~~~~~d~~~ 169 (274)
T d2b3ta1 97 LVEQALARLP------EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAI-KNIHILQSDWFS 169 (274)
T ss_dssp HHHHHHHHSC------SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTC-CSEEEECCSTTG
T ss_pred hhhhHhhhhc------ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCc-ccceeeeccccc
Confidence 4555555443 237889999999999999999987 78999999999999999999999888 579999999876
Q ss_pred CCCCCCCccEEEeccc-------------cCCCC------------CHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCcc
Q 016921 220 QPFPDGQFDLVWSMES-------------GEHMP------------DKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEE 274 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~-------------l~~~~------------~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~ 274 (380)
++++++||+|+++=- +.|-+ ....++.++.+.|+|||.+++-. +.
T Consensus 170 -~~~~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEi-g~-------- 239 (274)
T d2b3ta1 170 -ALAGQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEH-GW-------- 239 (274)
T ss_dssp -GGTTCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEEC-CS--------
T ss_pred -ccCCCceeEEEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEE-Cc--------
Confidence 455789999999621 11111 12458889999999999998842 11
Q ss_pred ccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEEEE-Eec
Q 016921 275 SLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDIKA-EDW 319 (380)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v~~-~~~ 319 (380)
...+.+.+++++.||..+++ +++
T Consensus 240 ----------------------~q~~~v~~~l~~~gf~~i~~~kDl 263 (274)
T d2b3ta1 240 ----------------------QQGEAVRQAFILAGYHDVETCRDY 263 (274)
T ss_dssp ----------------------SCHHHHHHHHHHTTCTTCCEEECT
T ss_pred ----------------------hHHHHHHHHHHHCCCCeEEEEECC
Confidence 12467889999999986653 444
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=1.3e-13 Score=125.83 Aligned_cols=103 Identities=24% Similarity=0.292 Sum_probs=86.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||||||+|.++..+++....+|+++|.|+.+.. +++.....+...++.++.+|+.+++++.++||+|++....+
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~~ 113 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMGY 113 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCBT
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeeee
Confidence 38899999999999999999873468999999998764 66666777777899999999999988889999999876665
Q ss_pred CCC---CHHHHHHHHHHhcCCCcEEEE
Q 016921 238 HMP---DKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~~---~~~~~l~~~~r~LkpgG~l~~ 261 (380)
++. ....++....++|||||.++-
T Consensus 114 ~~~~e~~~~~~~~a~~~~Lkp~G~iip 140 (311)
T d2fyta1 114 FLLFESMLDSVLYAKNKYLAKGGSVYP 140 (311)
T ss_dssp TBTTTCHHHHHHHHHHHHEEEEEEEES
T ss_pred ecccccccHHHHHHHHhcCCCCcEEec
Confidence 553 356778888899999999874
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.49 E-value=2.7e-13 Score=118.88 Aligned_cols=148 Identities=16% Similarity=0.229 Sum_probs=107.3
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
..+|||||||+|.++..+++++ +.++++.|+ |..++ ..+..++++++.+|+.+. .+ .+|++++..+||
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~-------~~~~~~rv~~~~gD~f~~-~p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVE-------NLSGSNNLTYVGGDMFTS-IP--NADAVLLKYILH 149 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHT-------TCCCBTTEEEEECCTTTC-CC--CCSEEEEESCGG
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHH-------hCcccCceEEEecCcccC-CC--CCcEEEEEeecc
Confidence 5689999999999999999998 789999999 43333 234567999999999863 33 579999999999
Q ss_pred CCCCH--HHHHHHHHHhcCCC---cEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCc
Q 016921 238 HMPDK--SKFVSELARVTAPA---GTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLE 312 (380)
Q Consensus 238 ~~~~~--~~~l~~~~r~Lkpg---G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~ 312 (380)
+++|. .++|+++++.|+|| |++++.+...+....... .......+.-...... -..+|.++|.++|++|||+
T Consensus 150 dw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~--~~~~~~~~dl~m~~~~-G~ert~~e~~~ll~~AGf~ 226 (244)
T d1fp2a2 150 NWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQ--VTQIKLLMDVNMACLN-GKERNEEEWKKLFIEAGFQ 226 (244)
T ss_dssp GSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHH--HHHHHHHHHHHGGGGT-CCCEEHHHHHHHHHHTTCC
T ss_pred cCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCch--HHHHHHHHHHHHHhCC-CcCCCHHHHHHHHHHcCCc
Confidence 99876 57999999999999 788898865443221111 0101111111111111 1246899999999999999
Q ss_pred EEEEEecC
Q 016921 313 DIKAEDWS 320 (380)
Q Consensus 313 ~v~~~~~~ 320 (380)
++++....
T Consensus 227 ~~~i~~~~ 234 (244)
T d1fp2a2 227 HYKISPLT 234 (244)
T ss_dssp EEEEEEEE
T ss_pred eEEEEECC
Confidence 99986544
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.45 E-value=5.1e-13 Score=118.12 Aligned_cols=128 Identities=16% Similarity=0.095 Sum_probs=102.7
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
++.+|||+|||+|.++..+++...++|+++|+++.+++.++++++.+++.++++++++|+.+++ +.+.||.|++..
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~-~~~~~D~Ii~~~--- 182 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP-GENIADRILMGY--- 182 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC-CCSCEEEEEECC---
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc-cCCCCCEEEECC---
Confidence 4899999999999999999987557999999999999999999999999889999999999875 357899998742
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLEDI 314 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~v 314 (380)
.+....++..+.+.|++||.+.+.++....... -...+.+.++.+..||.+.
T Consensus 183 -p~~~~~~l~~a~~~l~~gG~lh~~~~~~~~~~~------------------------~~~~e~~~~~~~~~g~~v~ 234 (260)
T d2frna1 183 -VVRTHEFIPKALSIAKDGAIIHYHNTVPEKLMP------------------------REPFETFKRITKEYGYDVE 234 (260)
T ss_dssp -CSSGGGGHHHHHHHEEEEEEEEEEEEEEGGGTT------------------------TTTHHHHHHHHHHTTCEEE
T ss_pred -CCchHHHHHHHHhhcCCCCEEEEEeccccccch------------------------hhHHHHHHHHHHHcCCceE
Confidence 223456788899999999999877653221100 0234667788888999764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.43 E-value=1.4e-13 Score=128.36 Aligned_cols=120 Identities=13% Similarity=0.111 Sum_probs=90.9
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcC-------C-CCC
Q 016921 139 VRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARG-------L-ADK 209 (380)
Q Consensus 139 ~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~-------~-~~~ 209 (380)
..++.++++.+.+++ +.+|||||||+|..+..+|..+++ +|+|||+++.|++.|+++..+.+ . ...
T Consensus 202 ~~~i~~Il~~l~Lkp-----gd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~ 276 (406)
T d1u2za_ 202 PNFLSDVYQQCQLKK-----GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNN 276 (406)
T ss_dssp HHHHHHHHHHTTCCT-----TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCC
T ss_pred HHHHHHHHHHhCCCC-----CCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 346888888888876 999999999999999999998864 89999999999999999886532 1 123
Q ss_pred eEE-EEcCCCCCCCC---CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 210 VSF-QVGDALQQPFP---DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 210 v~~-~~~d~~~~~~~---~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+.+ ..++....+.. -..+|+|++. .+.|.++....+.++++.|||||+|++.+.
T Consensus 277 ~~~~~~~~f~~~~~~d~~~~~adVV~in-n~~f~~~l~~~L~ei~r~LKPGGrIVs~~~ 334 (406)
T d1u2za_ 277 VEFSLKKSFVDNNRVAELIPQCDVILVN-NFLFDEDLNKKVEKILQTAKVGCKIISLKS 334 (406)
T ss_dssp EEEEESSCSTTCHHHHHHGGGCSEEEEC-CTTCCHHHHHHHHHHHTTCCTTCEEEESSC
T ss_pred ceeeeeechhhccccccccccceEEEEe-cccCchHHHHHHHHHHHhcCCCcEEEEecc
Confidence 333 33444332211 1346777764 456778889999999999999999988763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.40 E-value=2.8e-13 Score=116.92 Aligned_cols=112 Identities=19% Similarity=0.290 Sum_probs=89.3
Q ss_pred HHHHHHHHc--CCCCCCCCCCCEEEEECCCcChHHHHHHHHc---C----CEEEEEeCCHHHHHHHHHHHHHcCC----C
Q 016921 141 MIEETLRFA--GVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF---G----AKCQGITLSPVQAQRANALAAARGL----A 207 (380)
Q Consensus 141 ~~~~ll~~~--~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~---~----~~v~giD~s~~~~~~a~~~~~~~~~----~ 207 (380)
+...+++.+ .++ ++.+|||||||+|..+..+++.. + .+|+++|+++++++.|++++...+. .
T Consensus 66 ~~a~~l~~L~~~l~-----~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~ 140 (223)
T d1r18a_ 66 MHAFALEYLRDHLK-----PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDS 140 (223)
T ss_dssp HHHHHHHHTTTTCC-----TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhccC-----CCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCc
Confidence 345566665 344 49999999999999998888764 2 4899999999999999987644321 1
Q ss_pred CCeEEEEcCCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 208 DKVSFQVGDALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 208 ~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.++.+..+|..+...+.++||.|++..++.++++ .+.+.|||||++++..
T Consensus 141 ~nv~~~~~d~~~~~~~~~~fD~Iiv~~a~~~~p~------~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 141 GQLLIVEGDGRKGYPPNAPYNAIHVGAAAPDTPT------ELINQLASGGRLIVPV 190 (223)
T ss_dssp TSEEEEESCGGGCCGGGCSEEEEEECSCBSSCCH------HHHHTEEEEEEEEEEE
T ss_pred cEEEEEecccccccccccceeeEEEEeechhchH------HHHHhcCCCcEEEEEE
Confidence 4799999998876556789999999999988764 4678999999998854
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.34 E-value=1.2e-12 Score=110.04 Aligned_cols=118 Identities=19% Similarity=0.296 Sum_probs=97.1
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
++++++..+.+.+ +..|||++||+|..+..+++.+ +++|+|+|.++.|++.|+++++..+ .++.++++++.+
T Consensus 11 ll~evi~~l~~~~-----~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~--~r~~~~~~~f~~ 83 (192)
T d1m6ya2 11 MVREVIEFLKPED-----EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS--DRVSLFKVSYRE 83 (192)
T ss_dssp THHHHHHHHCCCT-----TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT--TTEEEEECCGGG
T ss_pred HHHHHHHhhCCCC-----CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc--ccccchhHHHhh
Confidence 5667777776654 8999999999999999999987 7899999999999999999886654 689999999877
Q ss_pred C-----CCCCCCccEEEeccccC---------CCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 220 Q-----PFPDGQFDLVWSMESGE---------HMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 220 ~-----~~~~~~fD~V~~~~~l~---------~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+ .+..++||.|+...++. .+......+..+.++|+|||.+++..+.
T Consensus 84 ~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~ 143 (192)
T d1m6ya2 84 ADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFH 143 (192)
T ss_dssp HHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESS
T ss_pred HHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccc
Confidence 5 24468999998765552 2234467899999999999999998753
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.27 E-value=3.9e-12 Score=116.27 Aligned_cols=107 Identities=21% Similarity=0.184 Sum_probs=87.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 233 (380)
++.+|||++||+|.++..++.....+|+++|+|+.+++.+++++..+|+..+++++++|+.+. +...++||+|++.
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~D 224 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLD 224 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchhcC
Confidence 489999999999999999988634589999999999999999999999988999999998653 2346789999974
Q ss_pred cccCCC--C-------CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ESGEHM--P-------DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ~~l~~~--~-------~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
--...- . +...++..+.++|+|||.|+++..
T Consensus 225 pP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~ 264 (324)
T d2as0a2 225 PPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSC 264 (324)
T ss_dssp CCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEEC
T ss_pred CccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 322111 1 234578889999999999999873
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=1.8e-10 Score=100.91 Aligned_cols=100 Identities=11% Similarity=0.064 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQ 213 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~ 213 (380)
+......+..++..... ...+..+|||||||+|..+..++.+. +++++|+|+|+.+++.|+++++..++..++.++
T Consensus 41 r~~~~~~i~~l~~~~~~---~~~~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~ 117 (250)
T d2h00a1 41 RLNYIHWVEDLIGHQDS---DKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVV 117 (250)
T ss_dssp HHHHHHHHHHHHCCCCG---GGCCCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEE
T ss_pred HHHHHHHHHHHhhhhcc---CccccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeee
Confidence 44444555555432221 11346799999999999999999887 899999999999999999999999999999998
Q ss_pred EcCCCCCC------CCCCCccEEEeccccC
Q 016921 214 VGDALQQP------FPDGQFDLVWSMESGE 237 (380)
Q Consensus 214 ~~d~~~~~------~~~~~fD~V~~~~~l~ 237 (380)
..+....- ..+++||+|+|+=-.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~fD~ivsNPPY~ 147 (250)
T d2h00a1 118 KVPQKTLLMDALKEESEIIYDFCMCNPPFF 147 (250)
T ss_dssp ECCTTCSSTTTSTTCCSCCBSEEEECCCCC
T ss_pred eeccHHhhhhhhhhcccCceeEEEecCccc
Confidence 87654421 2356899999975443
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.25 E-value=2.2e-12 Score=117.49 Aligned_cols=104 Identities=18% Similarity=0.115 Sum_probs=85.4
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~~ 234 (380)
+.+|||++||+|.++..++.. +.+|+++|+|+.+++.|+++++.+|+ .+++++++|+.+. +...++||+|++.-
T Consensus 146 g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl-~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 146 GERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGL-GNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp EEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTC-TTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCC-CCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 889999999999999998864 78999999999999999999999998 5799999998763 33457899999753
Q ss_pred ccCCC---------CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHM---------PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~---------~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-.... .+...++..+.++|||||.|+++..
T Consensus 224 P~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~sc 262 (318)
T d1wxxa2 224 PAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASC 262 (318)
T ss_dssp CCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21111 1234688899999999999998764
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.22 E-value=1.3e-11 Score=105.86 Aligned_cols=120 Identities=18% Similarity=0.272 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 135 RAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 135 ~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
...+-+++..++.... +.+|||||||+|..+..+++.. +.+|+++|+++.+.+.|++.+...|+.+++++
T Consensus 41 ~~~~G~lL~~lv~~~k--------pk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l 112 (214)
T d2cl5a1 41 GDAKGQIMDAVIREYS--------PSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTI 112 (214)
T ss_dssp HHHHHHHHHHHHHHHC--------CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEE
T ss_pred CHHHHHHHHHHHHhhC--------CCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCcccee
Confidence 3445567777777653 6799999999999999999876 68999999999999999999999999889999
Q ss_pred EEcCCCCC-C-----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 213 QVGDALQQ-P-----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 213 ~~~d~~~~-~-----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+.+. + +..++||+|++.+.-... .....+.+..++|||||.+++-+
T Consensus 113 ~~Gd~~e~l~~l~~~~~~~~~D~ifiD~~~~~~-~~~~~l~~~~~lLkpGGvIv~Dd 168 (214)
T d2cl5a1 113 LNGASQDLIPQLKKKYDVDTLDMVFLDHWKDRY-LPDTLLLEKCGLLRKGTVLLADN 168 (214)
T ss_dssp EESCHHHHGGGHHHHSCCCCEEEEEECSCGGGH-HHHHHHHHHTTCEEEEEEEEESC
T ss_pred eeccccccccchhhcccccccceeeeccccccc-ccHHHHHHHhCccCCCcEEEEeC
Confidence 99998763 1 345789999976321111 12234667788999999877644
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.22 E-value=5.4e-12 Score=102.42 Aligned_cols=105 Identities=13% Similarity=0.072 Sum_probs=83.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESG 236 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l 236 (380)
.+.+|||+|||+|.++...+.+...+|+++|.++.+++.+++.+...++.++++++++|+.+. ....++||+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP- 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP- 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS-
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh-
Confidence 488999999999999998888744599999999999999999999888888899999998773 345688999987421
Q ss_pred CCCCCHHHHHHHHH--HhcCCCcEEEEEe
Q 016921 237 EHMPDKSKFVSELA--RVTAPAGTIIIVT 263 (380)
Q Consensus 237 ~~~~~~~~~l~~~~--r~LkpgG~l~~~~ 263 (380)
+.-......+..+. +.|+|||.+++..
T Consensus 93 y~~~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 93 YAKETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp SHHHHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hccchHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 11112345566554 4699999998854
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=7.1e-11 Score=101.25 Aligned_cols=117 Identities=16% Similarity=0.226 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
+-+++..+++... +.+|||||||+|..+..+++.. +.+|+.+|+++...+.|++.+...|+.++++++.+
T Consensus 47 ~g~lL~~L~~~~~--------~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~G 118 (219)
T d2avda1 47 QAQLLANLARLIQ--------AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 118 (219)
T ss_dssp HHHHHHHHHHHTT--------CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred HHHHHHHHHHccC--------CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEe
Confidence 4556666666543 7899999999999999999876 67999999999999999999999999999999999
Q ss_pred CCCCC------CCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 216 DALQQ------PFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 216 d~~~~------~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
|+.+. ....++||+|+...-= ......++.+.+.|+|||.+++-+..
T Consensus 119 da~e~l~~~~~~~~~~~fD~ifiD~dk---~~y~~~~~~~~~lL~~GGvii~Dn~l 171 (219)
T d2avda1 119 PALETLDELLAAGEAGTFDVAVVDADK---ENCSAYYERCLQLLRPGGILAVLRVL 171 (219)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEEECSCS---TTHHHHHHHHHHHEEEEEEEEEECCS
T ss_pred ehhhcchhhhhhcccCCccEEEEeCCH---HHHHHHHHHHHHHhcCCcEEEEeCCc
Confidence 98653 1235789999986422 35577889999999999999997654
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.17 E-value=5.3e-11 Score=106.66 Aligned_cols=106 Identities=16% Similarity=0.166 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
++.+|||+.||+|.++..++.. |++|++||.|+.+++.|++++..+++.. +++|+++|+.+. ....++||+|++
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~-GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Iil 210 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAA-GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILT 210 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHT-TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEE
T ss_pred CCCeEEEecCCCcHHHHHHHhC-CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEEE
Confidence 3789999999999999999876 8899999999999999999999888754 699999998764 123578999997
Q ss_pred c---ccc------CCC-CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 233 M---ESG------EHM-PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ~---~~l------~~~-~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ++- ..+ .+...+++.+.++|+|||.+++...
T Consensus 211 DPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~ 252 (309)
T d2igta1 211 DPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTA 252 (309)
T ss_dssp CCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEE
T ss_pred CCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEec
Confidence 3 211 111 1235577788999999998777653
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.10 E-value=5.7e-11 Score=107.71 Aligned_cols=106 Identities=16% Similarity=0.042 Sum_probs=85.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCC----CCCCCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQ----PFPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~----~~~~~~fD~V~~ 232 (380)
++.+|||+.||+|.++..++......|+++|+|+.+++.++++++.+++. .+++++++|+.+. ....++||+|++
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~ 223 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIII 223 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEEE
Confidence 38999999999999999887752348999999999999999999998884 5799999998653 223578999997
Q ss_pred cc--------ccCC-CCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 ME--------SGEH-MPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~--------~l~~-~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.= .+.. ..+..++++.+.++|+|||.|+++.
T Consensus 224 DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s 263 (317)
T d2b78a2 224 DPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST 263 (317)
T ss_dssp CCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred cChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe
Confidence 41 1111 1234678999999999999999976
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.09 E-value=2.2e-10 Score=96.49 Aligned_cols=106 Identities=14% Similarity=0.125 Sum_probs=76.0
Q ss_pred CCCEEEEECCCcChHH----HHHHHHc-----CCEEEEEeCCHHHHHHHHHHH--------------H----HcCC----
Q 016921 158 RPKNVVDVGCGIGGSS----RYLAKKF-----GAKCQGITLSPVQAQRANALA--------------A----ARGL---- 206 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~----~~l~~~~-----~~~v~giD~s~~~~~~a~~~~--------------~----~~~~---- 206 (380)
+..+|+++|||||.-. ..+.+.. ..+|+|+|+|+.+++.|++-. . ..+.
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 3679999999999943 3344332 237999999999999987421 0 0000
Q ss_pred --------CCCeEEEEcCCCCC-CCCCCCccEEEeccccCCCCCH--HHHHHHHHHhcCCCcEEEEEe
Q 016921 207 --------ADKVSFQVGDALQQ-PFPDGQFDLVWSMESGEHMPDK--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 207 --------~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~~~~~~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
-..+.+...+.... +.+.+.||+|+|.++|.++++. .++++++++.|+|||+|++..
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~pGG~L~lG~ 171 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKPDGLLFAGH 171 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEEEEEEEECT
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCCCcEEEEec
Confidence 01244555555443 2345789999999999999754 689999999999999999863
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.07 E-value=5.4e-10 Score=96.03 Aligned_cols=117 Identities=16% Similarity=0.219 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 138 QVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 138 ~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
+-+++..+++... +.+|||||+++|..+..+++.. +++++.+|.++...+.|++.+.+.|+.++++++.+
T Consensus 47 ~g~~L~~L~~~~~--------~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g 118 (227)
T d1susa1 47 EGQFLSMLLKLIN--------AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREG 118 (227)
T ss_dssp HHHHHHHHHHHHT--------CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEES
T ss_pred HHHHHHHHHHhcC--------CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeeh
Confidence 3445666665543 7899999999999999999876 68999999999999999999999999889999999
Q ss_pred CCCCC-C------CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 216 DALQQ-P------FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 216 d~~~~-~------~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
++.+. + ...++||+|+...-= ......++.+.+.|+|||.+++-...
T Consensus 119 ~a~~~L~~l~~~~~~~~~fD~iFiDa~k---~~y~~~~e~~~~ll~~gGiii~DNvl 172 (227)
T d1susa1 119 PALPVLDEMIKDEKNHGSYDFIFVDADK---DNYLNYHKRLIDLVKVGGVIGYDNTL 172 (227)
T ss_dssp CHHHHHHHHHHCGGGTTCBSEEEECSCS---TTHHHHHHHHHHHBCTTCCEEEETTT
T ss_pred HHHHHHHHHHhccccCCceeEEEeccch---hhhHHHHHHHHhhcCCCcEEEEccCC
Confidence 98763 1 124689999986422 45678899999999999999997643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.07 E-value=6.9e-11 Score=97.60 Aligned_cols=103 Identities=16% Similarity=0.183 Sum_probs=74.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC--CCCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ--QPFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~--~~~~~~~fD~V~~~~~ 235 (380)
++.+|||+|||+|.++..++.+ |++++++|.++.+++.++++++..++..++....+|... .....++||+|++.=-
T Consensus 41 ~g~~vLDl~~G~G~~~i~a~~~-ga~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~DPP 119 (171)
T d1ws6a1 41 RRGRFLDPFAGSGAVGLEAASE-GWEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPP 119 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHT-TCEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCC
T ss_pred CCCeEEEeccccchhhhhhhhc-cchhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEEccc
Confidence 3889999999999999998886 889999999999999999999988886555444444211 1234578999987421
Q ss_pred cCCCCCHHHHHHHH--HHhcCCCcEEEEEe
Q 016921 236 GEHMPDKSKFVSEL--ARVTAPAGTIIIVT 263 (380)
Q Consensus 236 l~~~~~~~~~l~~~--~r~LkpgG~l~~~~ 263 (380)
++. +....+..+ ...|+|||.+++..
T Consensus 120 -Y~~-~~~~~l~~l~~~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 120 -YAM-DLAALFGELLASGLVEAGGLYVLQH 147 (171)
T ss_dssp -TTS-CTTHHHHHHHHHTCEEEEEEEEEEE
T ss_pred -ccc-CHHHHHHHHHHcCCcCCCeEEEEEe
Confidence 122 222334443 34799999888754
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.06 E-value=2.9e-10 Score=95.37 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=57.5
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~ 233 (380)
+.+|||+|||+|.++..++.....+|+|+|+++.+++.|+++. .+++|+++|+.+++ ++||+|+++
T Consensus 49 Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~------~~~~~~~~D~~~l~---~~fD~Vi~N 114 (197)
T d1ne2a_ 49 GRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC------GGVNFMVADVSEIS---GKYDTWIMN 114 (197)
T ss_dssp TSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC------TTSEEEECCGGGCC---CCEEEEEEC
T ss_pred CCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc------ccccEEEEehhhcC---CcceEEEeC
Confidence 8999999999999998877763468999999999999998865 46899999998864 789999986
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=9.1e-10 Score=96.99 Aligned_cols=104 Identities=18% Similarity=0.183 Sum_probs=79.1
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-CCCCCccEEEecc---
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-FPDGQFDLVWSME--- 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~--- 234 (380)
..+|||+|||+|..+..+++..+++|+++|+|+..++.|+++++..++..++.+..+|..+.. ...++||+|+++=
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 568999999999999999876578999999999999999999999999888999999987642 2247899999851
Q ss_pred ----ccCCC--CCHH----------HHHH-HHHHhcCCCcEEEEE
Q 016921 235 ----SGEHM--PDKS----------KFVS-ELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ----~l~~~--~~~~----------~~l~-~~~r~LkpgG~l~~~ 262 (380)
.+... .+|. .+++ -+.+.|+|||.+++-
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~E 235 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLME 235 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEE
Confidence 11000 0111 2232 256789999987774
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.97 E-value=1.8e-09 Score=91.22 Aligned_cols=73 Identities=16% Similarity=0.038 Sum_probs=62.0
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEecccc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESG 236 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l 236 (380)
+.+|||+|||+|.++..++.....+|+|+|+++.+++.+++++...+. +..++.+|+..+ +++||+|+++--.
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~--~~~~~~~d~~~~---~~~fD~Vi~nPP~ 119 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG--KFKVFIGDVSEF---NSRVDIVIMNPPF 119 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT--SEEEEESCGGGC---CCCCSEEEECCCC
T ss_pred CCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC--CceEEECchhhh---CCcCcEEEEcCcc
Confidence 889999999999999988876345899999999999999999877664 688999998775 4689999986443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.91 E-value=2.5e-09 Score=88.87 Aligned_cols=105 Identities=16% Similarity=0.039 Sum_probs=83.8
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC----CCCCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ----PFPDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~~~~fD~V~~~ 233 (380)
.+.+|||+.||+|.++...+.+...+|+++|.++.+++.++++++..+...+++++++|+.+. .-...+||+|++.
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD 120 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 120 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence 489999999999999999998744579999999999999999998888877899999998763 1235689999874
Q ss_pred cccCCCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 234 ESGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
=- +...+....+..+.. .|+++|.+++..
T Consensus 121 PP-Y~~~~~~~~l~~i~~~~~L~~~giIi~E~ 151 (182)
T d2fhpa1 121 PP-YAKQEIVSQLEKMLERQLLTNEAVIVCET 151 (182)
T ss_dssp CC-GGGCCHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hh-hhhhHHHHHHHHHHHCCCCCCCEEEEEEc
Confidence 21 223455677777765 699999887743
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=6.3e-09 Score=86.52 Aligned_cols=103 Identities=12% Similarity=0.034 Sum_probs=82.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccccC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMESGE 237 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~l~ 237 (380)
+.+|||++||+|.+++..+.+...+|+.||.++..++.++++++..+. .++.++..|+.+. .....+||+|++.=-.
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~-~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY- 121 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKA-GNARVVNSNAMSFLAQKGTPHNIVFVDPPF- 121 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTC-CSEEEECSCHHHHHSSCCCCEEEEEECCSS-
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccc-cceeeeeecccccccccccccCEEEEcCcc-
Confidence 789999999999999998887445899999999999999999987665 5789999997764 3346789999986322
Q ss_pred CCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 238 HMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 238 ~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
.-.....++..+.+ .|+++|.+++..
T Consensus 122 ~~~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 122 RRGLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp STTTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred ccchHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 22345677777765 599999988854
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.89 E-value=1.6e-08 Score=85.17 Aligned_cols=115 Identities=14% Similarity=0.098 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 137 AQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 137 ~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
+.+++++.+.-.-.+ ++.+|+|||+|.|..+..+|-.. ..+++.+|.+..-+...+....+.++ .++++++.
T Consensus 50 ~~rHi~DSl~~~~~~------~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L-~nv~v~~~ 122 (207)
T d1jsxa_ 50 LVRHILDSIVVAPYL------QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKL-ENIEPVQS 122 (207)
T ss_dssp HHHHHHHHHHHGGGC------CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTC-SSEEEEEC
T ss_pred HHHHhcchHhhhhhh------cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCC-cceeeecc
Confidence 444555555432222 26799999999999999999876 68999999999999999999988888 48999999
Q ss_pred CCCCCCCCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQPFPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~~~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+++.. ...+||+|+++.+ .....++.-+...+++||.+++.-
T Consensus 123 R~E~~~-~~~~fD~V~sRA~----~~~~~ll~~~~~~l~~~g~~~~~K 165 (207)
T d1jsxa_ 123 RVEEFP-SEPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALK 165 (207)
T ss_dssp CTTTSC-CCSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEE
T ss_pred chhhhc-cccccceehhhhh----cCHHHHHHHHHHhcCCCcEEEEEC
Confidence 999875 3568999998643 577889999999999999998864
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.81 E-value=8.4e-09 Score=89.00 Aligned_cols=91 Identities=16% Similarity=0.219 Sum_probs=71.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
..++++++.+.+.. +.+|||||||+|.++..|++. +.+|+++|+++.+.+..+++.... +++.++.+|+.+
T Consensus 8 ~i~~~iv~~~~~~~-----~d~VlEIGpG~G~LT~~Ll~~-~~~v~avE~D~~l~~~l~~~~~~~---~n~~i~~~D~l~ 78 (235)
T d1qama_ 8 HNIDKIMTNIRLNE-----HDNIFEIGSGKGHFTLELVQR-CNFVTAIEIDHKLCKTTENKLVDH---DNFQVLNKDILQ 78 (235)
T ss_dssp HHHHHHHTTCCCCT-----TCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHTTTC---CSEEEECCCGGG
T ss_pred HHHHHHHHhcCCCC-----CCeEEEECCCchHHHHHHHhC-cCceEEEeeccchHHHHHHHhhcc---cchhhhhhhhhh
Confidence 36677777776655 999999999999999999987 889999999999999998876432 589999999999
Q ss_pred CCCCCCCccEEEeccccCCCC
Q 016921 220 QPFPDGQFDLVWSMESGEHMP 240 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~ 240 (380)
.+++......|+ ...=+++.
T Consensus 79 ~~~~~~~~~~vv-~NLPYnIs 98 (235)
T d1qama_ 79 FKFPKNQSYKIF-GNIPYNIS 98 (235)
T ss_dssp CCCCSSCCCEEE-EECCGGGH
T ss_pred ccccccccceee-eeehhhhh
Confidence 876654433444 33444443
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.81 E-value=9.5e-08 Score=87.85 Aligned_cols=120 Identities=18% Similarity=0.329 Sum_probs=91.9
Q ss_pred cHHHHHHHHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEE
Q 016921 133 DHRAAQVRMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSF 212 (380)
Q Consensus 133 ~~~~~~~~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~ 212 (380)
........+++.+++.+.... +.+|||+-||+|.++..|++. ..+|+|+|.++.+++.|+++++.+++ .|+.|
T Consensus 192 ~N~~~~e~l~~~v~~~~~~~~-----~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~i-~n~~~ 264 (358)
T d1uwva2 192 VNAGVNQKMVARALEWLDVQP-----EDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGL-QNVTF 264 (358)
T ss_dssp SBHHHHHHHHHHHHHHHTCCT-----TCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTC-CSEEE
T ss_pred cchhhhhHHHHHHHHhhccCC-----CceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhccc-cccee
Confidence 355667778888888876654 889999999999999999986 78999999999999999999998888 58999
Q ss_pred EEcCCCCCC----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 213 QVGDALQQP----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 213 ~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|.++.- ....+||+|+..=-=. -..++++.+.+. +|.-.++++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~d~vilDPPR~---G~~~~~~~l~~~-~~~~ivYVSC 315 (358)
T d1uwva2 265 YHENLEEDVTKQPWAKNGFDKVLLDPARA---GAAGVMQQIIKL-EPIRIVYVSC 315 (358)
T ss_dssp EECCTTSCCSSSGGGTTCCSEEEECCCTT---CCHHHHHHHHHH-CCSEEEEEES
T ss_pred eecchhhhhhhhhhhhccCceEEeCCCCc---cHHHHHHHHHHc-CCCEEEEEeC
Confidence 999987641 2246799988731000 013466666664 6777777764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.66 E-value=4.3e-08 Score=80.88 Aligned_cols=113 Identities=19% Similarity=0.312 Sum_probs=89.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
++++++..+.+.+ +..++|..+|.|+.+..+++. +.+|+|+|.++.++..+++. ...++.+++.++.++
T Consensus 6 ll~Evl~~l~~~~-----g~~~vD~T~G~GGhs~~iL~~-~~~viaiD~D~~ai~~a~~~-----~~~~~~~~~~~f~~~ 74 (182)
T d1wg8a2 6 LYQEALDLLAVRP-----GGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKGL-----HLPGLTVVQGNFRHL 74 (182)
T ss_dssp THHHHHHHHTCCT-----TCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHHT-----CCTTEEEEESCGGGH
T ss_pred HHHHHHHhcCCCC-----CCEEEEeCCCCcHHHHHHhcc-cCcEEEEhhhhhHHHHHhhc-----cccceeEeehHHHHH
Confidence 4566777776654 999999999999999999987 78999999999999888764 235899999988775
Q ss_pred C-----CCCCCccEEEeccccCCC--C-------CHHHHHHHHHHhcCCCcEEEEEec
Q 016921 221 P-----FPDGQFDLVWSMESGEHM--P-------DKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 221 ~-----~~~~~fD~V~~~~~l~~~--~-------~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. ...+.+|.|+....+... . .....|......|+|||.+++..+
T Consensus 75 ~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~f 132 (182)
T d1wg8a2 75 KRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAF 132 (182)
T ss_dssp HHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred HHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEec
Confidence 2 345789999986554322 1 234578899999999999999875
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=1e-08 Score=90.77 Aligned_cols=105 Identities=16% Similarity=0.252 Sum_probs=80.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---------CCCCCeEEEEcCCCCCCCCCCCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---------GLADKVSFQVGDALQQPFPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~---------~~~~~v~~~~~d~~~~~~~~~~fD 228 (380)
++.+||-||+|.|..+..+++....+|+++|+++.+++.+++.+... ...++++++.+|+...--.+++||
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~yD 151 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGFD 151 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCEE
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCCC
Confidence 37899999999999999988754568999999999999999765321 224689999999876422357899
Q ss_pred EEEeccccCCCCC-----HHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPD-----KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~-----~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|++... ..... ..++++.+.+.|+|||.+++..
T Consensus 152 vIi~D~~-~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 152 VIIADST-DPVGPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp EEEEECC-CCC-----TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEEeCC-CCCCCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 9997432 22211 1578999999999999988754
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.59 E-value=2.2e-09 Score=93.21 Aligned_cols=91 Identities=21% Similarity=0.271 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++++++.+.+.+ +.+|||||||+|.++..|++. +.+|++||+++.+++.++++.. ..++++++.+|+.++
T Consensus 17 ii~kIv~~~~~~~-----~d~VLEIGpG~G~LT~~L~~~-~~~v~aIE~D~~l~~~l~~~~~---~~~n~~ii~~D~l~~ 87 (245)
T d1yuba_ 17 VLNQIIKQLNLKE-----TDTVYEIGTGKGHLTTKLAKI-SKQVTSIELDSHLFNLSSEKLK---LNTRVTLIHQDILQF 87 (245)
T ss_dssp THHHHHHHCCCCS-----SEEEEECSCCCSSCSHHHHHH-SSEEEESSSSCSSSSSSSCTTT---TCSEEEECCSCCTTT
T ss_pred HHHHHHHhcCCCC-----CCeEEEECCCccHHHHHHHhh-cCceeEeeecccchhhhhhhhh---hccchhhhhhhhhcc
Confidence 5677888887765 899999999999999999997 8899999999999888776553 225899999999999
Q ss_pred CCCCCCccEEEeccccCCCCC
Q 016921 221 PFPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 221 ~~~~~~fD~V~~~~~l~~~~~ 241 (380)
+++...++.|+++ .-+|+..
T Consensus 88 ~~~~~~~~~vv~N-LPY~Ist 107 (245)
T d1yuba_ 88 QFPNKQRYKIVGN-IPYHLST 107 (245)
T ss_dssp TCCCSSEEEEEEE-CCSSSCH
T ss_pred ccccceeeeEeee-eehhhhH
Confidence 8877777666654 4466654
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.59 E-value=2.8e-08 Score=89.32 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=81.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc--C--CCCCeEEEEcCCCCC-CCCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR--G--LADKVSFQVGDALQQ-PFPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~--~--~~~~v~~~~~d~~~~-~~~~~~fD~V~~ 232 (380)
+.+||.||.|.|..+..+++.. ..+|+++|+++.+++.+++.+... + -.++++++.+|+... .-.+++||+|++
T Consensus 78 pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~ 157 (312)
T d1uira_ 78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVII 157 (312)
T ss_dssp CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEEE
T ss_pred cceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEEEE
Confidence 7899999999999999998765 579999999999999999987432 1 236899999998774 223578999996
Q ss_pred ccccCCC-C------CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHM-P------DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~-~------~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
...=.+. . --.++++.+.+.|+|||.+++..
T Consensus 158 D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 158 DLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp ECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred eCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 4321111 0 11578999999999999988754
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.57 E-value=1.6e-07 Score=80.50 Aligned_cols=132 Identities=16% Similarity=0.102 Sum_probs=102.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC---CCCCccEEEec
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF---PDGQFDLVWSM 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~fD~V~~~ 233 (380)
...+|+|||+|.|..+..++-.. +.+++.+|.+..-....+....+.++ .++.++...++++.. ..++||+|+++
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L-~n~~i~~~R~E~~~~~~~~~~~~D~v~sR 148 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQL-ENTTFCHDRAETFGQRKDVRESYDIVTAR 148 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTC-SSEEEEESCHHHHTTCTTTTTCEEEEEEE
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCC-CCcEEEeehhhhccccccccccceEEEEh
Confidence 36799999999999999998866 78999999999999999998888888 489999988876532 23689999997
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHHHhhccCCCCCCCHHHHHHHHHhCCCcE
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKKICDAYYLPAWCSTADYVKLLQSLSLED 313 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~ 313 (380)
. +.....++.-+...+++||.+++.--. .+. . ..++..+.+...|++.
T Consensus 149 A----va~l~~ll~~~~~~l~~~g~~i~~KG~---------~~~----~---------------El~~a~~~~~~~~~~~ 196 (239)
T d1xdza_ 149 A----VARLSVLSELCLPLVKKNGLFVALKAA---------SAE----E---------------ELNAGKKAITTLGGEL 196 (239)
T ss_dssp C----CSCHHHHHHHHGGGEEEEEEEEEEECC----------CH----H---------------HHHHHHHHHHHTTEEE
T ss_pred h----hhCHHHHHHHHhhhcccCCEEEEECCC---------ChH----H---------------HHHHHHHHHHHcCCEE
Confidence 4 457889999999999999999886410 000 0 1234456678889988
Q ss_pred EEEEecCCC
Q 016921 314 IKAEDWSQN 322 (380)
Q Consensus 314 v~~~~~~~~ 322 (380)
..+..+..+
T Consensus 197 ~~v~~~~lp 205 (239)
T d1xdza_ 197 ENIHSFKLP 205 (239)
T ss_dssp EEEEEEECT
T ss_pred EEEEEEeCC
Confidence 877766543
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.57 E-value=3.4e-07 Score=82.99 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=79.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF------GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~------~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~ 231 (380)
++.+|||.|||+|.++..+.++. ...++|+|+++.++..|+......+. ...+..+|..... +..+||+|+
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~-~~~~fD~vi 193 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ--KMTLLHQDGLANL-LVDPVDVVI 193 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC--CCEEEESCTTSCC-CCCCEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh--hhhhhcccccccc-ccccccccc
Confidence 37899999999999999887654 23799999999999999988876664 5677777765543 467899999
Q ss_pred eccccCCCCC------------------HHHHHHHHHHhcCCCcEEEEEec
Q 016921 232 SMESGEHMPD------------------KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 232 ~~~~l~~~~~------------------~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++=-+..... ...++..+.+.|+|||++++...
T Consensus 194 ~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 194 SDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp EECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 9743321111 13478999999999999888763
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.50 E-value=7.5e-08 Score=85.45 Aligned_cols=105 Identities=15% Similarity=0.137 Sum_probs=80.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.+++.+.... -.++++++.+|+... .-..++||+|++.
T Consensus 90 pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi~D 169 (295)
T d1inla_ 90 PKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIIID 169 (295)
T ss_dssp CCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEEE
T ss_pred CceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999998865 5789999999999999998764421 136899999998764 2235789999975
Q ss_pred cccCCC-C----CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM-P----DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~-~----~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-... + --.++++.+.+.|+|||.+++..
T Consensus 170 ~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~q~ 204 (295)
T d1inla_ 170 STDPTAGQGGHLFTEEFYQACYDALKEDGVFSAET 204 (295)
T ss_dssp C----------CCSHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCcCchhhhccHHHHHHHHhhcCCCcEEEEec
Confidence 322111 1 12579999999999999998864
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.49 E-value=1.7e-07 Score=79.88 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=79.0
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++.|+..+.... +.+|||.|||+|.++..+.+.. ...++|+|+++..+. +..+..+.++|..
T Consensus 7 i~~~m~~l~~~~~-----~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~----------~~~~~~~~~~~~~ 71 (223)
T d2ih2a1 7 VVDFMVSLAEAPR-----GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD----------LPPWAEGILADFL 71 (223)
T ss_dssp HHHHHHHHCCCCT-----TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC----------CCTTEEEEESCGG
T ss_pred HHHHHHHhcCCCC-----cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh----------hcccceeeeeehh
Confidence 4556666665544 8899999999999998887765 568999999986543 2245678888877
Q ss_pred CCCCCCCCccEEEeccccCCCC----------------------------C-HHHHHHHHHHhcCCCcEEEEEec
Q 016921 219 QQPFPDGQFDLVWSMESGEHMP----------------------------D-KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~----------------------------~-~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
... ....||+|+++--..... + ...++..+.+.|+|||++.+...
T Consensus 72 ~~~-~~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 72 LWE-PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp GCC-CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccc-cccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 654 457899999875432210 0 13567889999999999888763
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=4.8e-07 Score=79.45 Aligned_cols=85 Identities=25% Similarity=0.343 Sum_probs=70.2
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ 220 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~ 220 (380)
.++++++.+.+.. +.+|||||+|+|.++..|++. +.+|+++++++.+++..++.+.......+++++.+|+...
T Consensus 9 i~~kIv~~~~~~~-----~d~VlEIGPG~G~LT~~Ll~~-~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~ 82 (278)
T d1zq9a1 9 IINSIIDKAALRP-----TDVVLEVGPGTGNMTVKLLEK-AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT 82 (278)
T ss_dssp HHHHHHHHTCCCT-----TCEEEEECCTTSTTHHHHHHH-SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred HHHHHHHHhCCCC-----CCEEEEECCCchHHHHHHHhc-CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhh
Confidence 6677777777654 889999999999999999998 7899999999999999999886655556899999999887
Q ss_pred CCCCCCccEEEec
Q 016921 221 PFPDGQFDLVWSM 233 (380)
Q Consensus 221 ~~~~~~fD~V~~~ 233 (380)
+++ .++.|+++
T Consensus 83 ~~~--~~~~vV~N 93 (278)
T d1zq9a1 83 DLP--FFDTCVAN 93 (278)
T ss_dssp CCC--CCSEEEEE
T ss_pred hhh--hhhhhhcc
Confidence 654 34555543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.47 E-value=1.3e-07 Score=83.83 Aligned_cols=106 Identities=20% Similarity=0.282 Sum_probs=81.9
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC--CCCCCCccEEE
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ--PFPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~--~~~~~~fD~V~ 231 (380)
.+.+||=||.|.|..+..+.+.. ..+++++|+++++++.+++.+... .-.++++++.+|+... ...+++||+|+
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvIi 159 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAVI 159 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEEE
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEEE
Confidence 37899999999999999998865 468999999999999999976432 1246899999997653 23456899999
Q ss_pred eccccCCC-CC---HHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHM-PD---KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~-~~---~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
....-..- +. ..++++.+.+.|+|||.+++..
T Consensus 160 ~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 195 (290)
T d1xj5a_ 160 VDSSDPIGPAKELFEKPFFQSVARALRPGGVVCTQA 195 (290)
T ss_dssp ECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEEEC
T ss_pred EcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEEec
Confidence 74322111 11 2579999999999999999975
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=98.47 E-value=6e-07 Score=74.18 Aligned_cols=104 Identities=17% Similarity=0.135 Sum_probs=78.9
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-CeEEEEcCCCC---CCCCCCCccEEEecc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLAD-KVSFQVGDALQ---QPFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~-~v~~~~~d~~~---~~~~~~~fD~V~~~~ 234 (380)
+.+|||+-||||.++++.+.+....|+.||.+...+...+++++..+... ...+...|+.. ......+||+|++.=
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlDP 123 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLDP 123 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEECC
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEech
Confidence 78999999999999999998844599999999999999999998877644 46666666543 223346799998742
Q ss_pred ccCCCCCHHHHHHHHHH--hcCCCcEEEEEe
Q 016921 235 SGEHMPDKSKFVSELAR--VTAPAGTIIIVT 263 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r--~LkpgG~l~~~~ 263 (380)
- +.......++..+.. .|+++|.+++..
T Consensus 124 P-Y~~~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 124 P-FHFNLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp C-SSSCHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred h-HhhhhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 2 222345677777765 699999888854
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.45 E-value=1.8e-07 Score=82.24 Aligned_cols=105 Identities=20% Similarity=0.253 Sum_probs=81.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-C--CCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-G--LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~-~--~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.|++.+... + -.++++++.+|+... .-..++||+|+..
T Consensus 76 p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi~D 155 (274)
T d1iy9a_ 76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMVD 155 (274)
T ss_dssp CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEES
T ss_pred cceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEEEc
Confidence 7899999999999999998865 579999999999999999986432 1 246899999998763 2235789999975
Q ss_pred cccCCC--C--CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHM--P--DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~--~--~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-..- . --.++++.+.+.|+|||.++...
T Consensus 156 ~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 156 STEPVGPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp CSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 322111 0 13578999999999999998864
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=7.2e-07 Score=73.31 Aligned_cols=108 Identities=21% Similarity=0.276 Sum_probs=79.4
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
+.++.+...+- .++.+||||||+.|.|+..+.+.. ...++++|+.+. .. -+++.++++|..+
T Consensus 10 L~EI~~k~~l~----k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~-i~~~~~~~~d~~~ 73 (180)
T d1ej0a_ 10 LDEIQQSDKLF----KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DP-IVGVDFLQGDFRD 73 (180)
T ss_dssp HHHHHHHHCCC----CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CC-CTTEEEEESCTTS
T ss_pred HHHHHHHhCcc----CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cc-cCCceEeeccccc
Confidence 34455555432 258899999999999999998865 478999998762 12 2578999999876
Q ss_pred CC--------CCCCCccEEEeccccCCCCCH-----------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 220 QP--------FPDGQFDLVWSMESGEHMPDK-----------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 220 ~~--------~~~~~fD~V~~~~~l~~~~~~-----------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.. ...+++|+|++..+...-.+. ...+.-+.++|++||.+++=.|.
T Consensus 74 ~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~ 138 (180)
T d1ej0a_ 74 ELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQ 138 (180)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred chhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEec
Confidence 31 245789999997765443322 24677789999999999997753
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.39 E-value=1.1e-07 Score=84.76 Aligned_cols=105 Identities=19% Similarity=0.202 Sum_probs=78.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcC---CCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARG---LADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~---~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|..+..+++.. ..+|+++|+++.+++.+++.+.... -.++++++.+|+... .-..++||+|++.
T Consensus 107 pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII~D 186 (312)
T d2b2ca1 107 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIITD 186 (312)
T ss_dssp CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEEC
T ss_pred CCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEEEc
Confidence 7899999999999999998864 4699999999999999998764321 136899999998764 1235789999975
Q ss_pred cccCCCC----CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMP----DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~----~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..-..-+ -...+++.+.+.|+|||.++...
T Consensus 187 ~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 187 SSDPVGPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp CC-------------HHHHHHHHEEEEEEEEEEC
T ss_pred CCCCCCcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 3321111 12578999999999999999864
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.39 E-value=1.6e-07 Score=82.98 Aligned_cols=104 Identities=17% Similarity=0.229 Sum_probs=80.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc---CCCCCeEEEEcCCCCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR---GLADKVSFQVGDALQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~---~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~ 233 (380)
+.+||-||.|.|..+..+.+.. ..+|+++|+++.+++.+++.+... --.++++++.+|+... .-..++||+|++.
T Consensus 79 pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi~D 158 (285)
T d2o07a1 79 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVIITD 158 (285)
T ss_dssp CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEEEE
T ss_pred cCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEEEc
Confidence 7899999999999999998865 579999999999999999976431 1236899999998763 2235789999975
Q ss_pred cccCCCC-----CHHHHHHHHHHhcCCCcEEEEEe
Q 016921 234 ESGEHMP-----DKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 234 ~~l~~~~-----~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ..-.. -..++++.+.+.|+|||.+++..
T Consensus 159 ~-~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~ 192 (285)
T d2o07a1 159 S-SDPMGPAESLFKESYYQLMKTALKEDGVLCCQG 192 (285)
T ss_dssp C-C-----------CHHHHHHHHHEEEEEEEEEEE
T ss_pred C-CCCCCcccccccHHHHHHHHHhcCCCCeEEEec
Confidence 3 21111 11468999999999999998865
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.32 E-value=3.9e-07 Score=77.96 Aligned_cols=107 Identities=14% Similarity=0.183 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVG 215 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~ 215 (380)
++..++.... +.+|||||++.|..+..+++.. .++++|+|+++....... ....++.++++
T Consensus 71 ~~~eli~~~K--------Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~------~~~~~I~~i~g 136 (232)
T d2bm8a1 71 VYHDMLWELR--------PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA------SDMENITLHQG 136 (232)
T ss_dssp HHHHHHHHHC--------CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG------GGCTTEEEEEC
T ss_pred HHHHHHHHhC--------CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh------ccccceeeeec
Confidence 4455665542 7889999999999887776532 579999999875433211 12368999999
Q ss_pred CCCCCC----CCCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 216 DALQQP----FPDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 216 d~~~~~----~~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|..+.. +....+|+|+.-.. |+.......+ +....|++||++++.|
T Consensus 137 Ds~~~~~~~~l~~~~~dlIfID~~-H~~~~v~~~~-~~~~lLk~GG~iIveD 186 (232)
T d2bm8a1 137 DCSDLTTFEHLREMAHPLIFIDNA-HANTFNIMKW-AVDHLLEEGDYFIIED 186 (232)
T ss_dssp CSSCSGGGGGGSSSCSSEEEEESS-CSSHHHHHHH-HHHHTCCTTCEEEECS
T ss_pred ccccHHHHHHHHhcCCCEEEEcCC-cchHHHHHHH-HHhcccCcCCEEEEEc
Confidence 987642 33456898887543 4432222223 4568999999999976
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.31 E-value=3.6e-06 Score=75.34 Aligned_cols=106 Identities=16% Similarity=0.202 Sum_probs=83.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEec--
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSM-- 233 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~-- 233 (380)
++.+|||+.+|.|.=+..+++.. ...++++|+++.-+...++++...|. .++.+...|...++.....||.|++.
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~-~~i~~~~~d~~~~~~~~~~fD~ILvDaP 194 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIGELNVEFDKILLDAP 194 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTC-CSEEEESSCGGGGGGGCCCEEEEEEECC
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHh-hccccccccccccccccccccEEEEccc
Confidence 48999999999999888888766 46899999999999999999998887 47888888877766556889999862
Q ss_pred ----cccCCCCC------H----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 234 ----ESGEHMPD------K----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 234 ----~~l~~~~~------~----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+++..-++ . .+++..+.+.|||||+|+.++-
T Consensus 195 CSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTC 245 (313)
T d1ixka_ 195 CTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTC 245 (313)
T ss_dssp TTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeec
Confidence 22222121 1 2578899999999999888874
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=98.17 E-value=5.1e-05 Score=68.42 Aligned_cols=161 Identities=13% Similarity=0.139 Sum_probs=92.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----------------CCEEEEEeCCHHHHHHHHHHHHHc-CCCCC--eEEEEcCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----------------GAKCQGITLSPVQAQRANALAAAR-GLADK--VSFQVGDAL 218 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----------------~~~v~giD~s~~~~~~a~~~~~~~-~~~~~--v~~~~~d~~ 218 (380)
..+|.|+||.+|..++.+.... ..+|..-|+-.+-....=+.+... ...++ +.-+.+.+-
T Consensus 52 ~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY 131 (359)
T d1m6ex_ 52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFY 131 (359)
T ss_dssp EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSS
T ss_pred ceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchh
Confidence 4789999999999885433211 125666665332221111111110 00111 122334444
Q ss_pred CCCCCCCCccEEEeccccCCCC---------------------------------CHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 219 QQPFPDGQFDLVWSMESGEHMP---------------------------------DKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 219 ~~~~~~~~fD~V~~~~~l~~~~---------------------------------~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+--+|+++.|++++..++||+. |...+|+.=++-|+|||++++..++
T Consensus 132 ~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 132 GRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp SCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 4347899999999999999973 1234777788889999999998877
Q ss_pred CCCCCCCccc---cchHHHHHHHHHh----------hccCCCC-CCCHHHHHHHHHhCC-CcEEEEEec
Q 016921 266 HRDLAPSEES---LQPWEQELLKKIC----------DAYYLPA-WCSTADYVKLLQSLS-LEDIKAEDW 319 (380)
Q Consensus 266 ~~~~~~~~~~---~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~ll~~aG-f~~v~~~~~ 319 (380)
.....+.... +.......+..+. +.+.+|. +.+.+|++..+++.| |++...+.+
T Consensus 212 r~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~e~~ 280 (359)
T d1m6ex_ 212 RRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIEAS 280 (359)
T ss_dssp CSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEEEE
T ss_pred cCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeeeEee
Confidence 6543332211 1122222332222 2223343 468999999998876 777776643
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=8.6e-07 Score=76.77 Aligned_cols=73 Identities=15% Similarity=0.170 Sum_probs=60.6
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCC
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQ 219 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~ 219 (380)
..++++++.+.+.. +..|||||||+|.++..|++. +.+|+++|+++.+++..+++... .+++.++.+|+..
T Consensus 8 ~~~~~Iv~~~~~~~-----~d~vlEIGpG~G~LT~~Ll~~-~~~v~aiEiD~~l~~~L~~~~~~---~~~~~ii~~D~l~ 78 (252)
T d1qyra_ 8 FVIDSIVSAINPQK-----GQAMVEIGPGLAALTEPVGER-LDQLTVIELDRDLAARLQTHPFL---GPKLTIYQQDAMT 78 (252)
T ss_dssp HHHHHHHHHHCCCT-----TCCEEEECCTTTTTHHHHHTT-CSCEEEECCCHHHHHHHHTCTTT---GGGEEEECSCGGG
T ss_pred HHHHHHHHhcCCCC-----CCEEEEECCCchHHHHHHHcc-CCceEEEEeccchhHHHHHHhhh---ccchhHHhhhhhh
Confidence 35677777776654 889999999999999999987 78999999999999988764422 2589999999988
Q ss_pred CC
Q 016921 220 QP 221 (380)
Q Consensus 220 ~~ 221 (380)
++
T Consensus 79 ~~ 80 (252)
T d1qyra_ 79 FN 80 (252)
T ss_dssp CC
T ss_pred hc
Confidence 75
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.07 E-value=1e-05 Score=75.62 Aligned_cols=118 Identities=16% Similarity=0.251 Sum_probs=86.7
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc--------------CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF--------------GAKCQGITLSPVQAQRANALAAARGL 206 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~--------------~~~v~giD~s~~~~~~a~~~~~~~~~ 206 (380)
+++.++..+.... +.+|+|-+||+|.+...+.+.. ...+.|+|+++.+...|+....-.+.
T Consensus 150 Iv~~mv~ll~~~~-----~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~ 224 (425)
T d2okca1 150 LIQAMVDCINPQM-----GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGI 224 (425)
T ss_dssp HHHHHHHHHCCCT-----TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTC
T ss_pred hhHhhheeccCcc-----cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCC
Confidence 5556666665443 7899999999999998887754 12599999999999999988876665
Q ss_pred C-CCeEEEEcCCCCCCCCCCCccEEEeccccCCC----------------CC-HHHHHHHHHHhcCCCcEEEEEec
Q 016921 207 A-DKVSFQVGDALQQPFPDGQFDLVWSMESGEHM----------------PD-KSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 207 ~-~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~~----------------~~-~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
. .+..+...|....+ +..+||+|+++=-+..- .+ ...++..+...|++||++.+...
T Consensus 225 ~~~~~~i~~~d~l~~~-~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 225 GTDRSPIVCEDSLEKE-PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CSSCCSEEECCTTTSC-CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceeecCchhhhh-cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 3 24567777776543 46789999986333111 01 13589999999999999888763
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.98 E-value=6.2e-05 Score=66.42 Aligned_cols=74 Identities=16% Similarity=0.142 Sum_probs=63.1
Q ss_pred CCCEEEEECCCcChHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC---CCCccEEEe
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF--GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP---DGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~--~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~fD~V~~ 232 (380)
++.+|||+.+|.|.-+..+++.. ...|+++|+++.-++..+++++..|+ .++.+...|...+... .+.||.|++
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~-~~~~~~~~d~~~~~~~~~~~~~fD~VL~ 172 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGV-SCCELAEEDFLAVSPSDPRYHEVHYILL 172 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTC-CSEEEEECCGGGSCTTCGGGTTEEEEEE
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCc-cceeeeehhhhhhcccccccceeeEEee
Confidence 48999999999999998888765 57899999999999999999999988 4799999998776422 257999996
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.96 E-value=8.8e-06 Score=74.36 Aligned_cols=101 Identities=13% Similarity=0.028 Sum_probs=80.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCC--------------CeEEEEcCCCCCC-C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLAD--------------KVSFQVGDALQQP-F 222 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~--------------~v~~~~~d~~~~~-~ 222 (380)
+.+|||..||+|..++..+.+. ...|+.+|+|+..++.++++++.++... .+.+.+.|+..+. .
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 7899999999999999888776 4589999999999999999998876532 3556666654432 1
Q ss_pred CCCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 223 PDGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 223 ~~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
..+.||+|.+.- +..+..++..+.+.++.||.|.++.
T Consensus 126 ~~~~fDvIDiDP----fGs~~pfldsAi~a~~~~Gll~vTa 162 (375)
T d2dula1 126 RHRYFHFIDLDP----FGSPMEFLDTALRSAKRRGILGVTA 162 (375)
T ss_dssp STTCEEEEEECC----SSCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hcCcCCcccCCC----CCCcHHHHHHHHHHhccCCEEEEEe
Confidence 246799988742 4466789999999999999999974
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.94 E-value=1.6e-05 Score=69.98 Aligned_cols=106 Identities=15% Similarity=0.171 Sum_probs=80.0
Q ss_pred CCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEe---
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWS--- 232 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~--- 232 (380)
++.+|||+.+|.|.=+..+++.. +..|+++|+++.-+...+++++..|.. ++.....|.... ....+.||.|++
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~-~~~~~~~~~~~~~~~~~~~fd~IL~DaP 180 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWCGEQQFDRILLDAP 180 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHHTTCCEEEEEEECC
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhccccc-ceeeeccccccchhcccccccEEEEecc
Confidence 48999999999999999998865 578999999999999999999998874 454444443322 123468999996
Q ss_pred ---ccccCCCCCH----------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 233 ---MESGEHMPDK----------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 233 ---~~~l~~~~~~----------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+++..-++. .++|..+.+.|||||+|+-++-
T Consensus 181 CSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTC 231 (284)
T d1sqga2 181 CSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATC 231 (284)
T ss_dssp CCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEES
T ss_pred ccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeee
Confidence 2333332332 3588889999999999998874
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.71 E-value=0.00021 Score=60.25 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=68.2
Q ss_pred HHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcC-CCC
Q 016921 142 IEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGD-ALQ 219 (380)
Q Consensus 142 ~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d-~~~ 219 (380)
+..+.+...+. +..+|+|+|||.|.|+..++.+. ...|.|+|+--...+. .......+. +-+.+...+ +..
T Consensus 55 l~~~~~~~~~~-----~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~-P~~~~~~~~-ni~~~~~~~dv~~ 127 (257)
T d2p41a1 55 LRWFVERNLVT-----PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEE-PIPMSTYGW-NLVRLQSGVDVFF 127 (257)
T ss_dssp HHHHHHTTSSC-----CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCSTTG-GGEEEECSCCTTT
T ss_pred HHHHHHhcCcc-----CCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccC-Ccccccccc-ccccchhhhhHHh
Confidence 34445544444 47899999999999999998764 3577888873221000 000000000 113333322 222
Q ss_pred CCCCCCCccEEEeccccCCCCCH-------HHHHHHHHHhcCCCcEEEEEecc
Q 016921 220 QPFPDGQFDLVWSMESGEHMPDK-------SKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 220 ~~~~~~~fD~V~~~~~l~~~~~~-------~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
.+.+..|+|+|..+- +-+++ -++++-+.+.|+|||.+++=.++
T Consensus 128 --l~~~~~D~vlcDm~e-ss~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~ 177 (257)
T d2p41a1 128 --IPPERCDTLLCDIGE-SSPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLN 177 (257)
T ss_dssp --SCCCCCSEEEECCCC-CCSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESC
T ss_pred --cCCCcCCEEEeeCCC-CCCCchhhhhhHHHHHHHHHHHcccCCEEEEEECC
Confidence 346889999987543 34333 25778888999999998886653
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=0.00015 Score=69.38 Aligned_cols=119 Identities=13% Similarity=0.115 Sum_probs=79.6
Q ss_pred HHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHc-------------------CCEEEEEeCCHHHHHHHHHHH
Q 016921 141 MIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKF-------------------GAKCQGITLSPVQAQRANALA 201 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~-------------------~~~v~giD~s~~~~~~a~~~~ 201 (380)
+++.++..+... ++.+|+|-+||+|.+...+.+.. ...++|+|+++.+...|+...
T Consensus 152 Iv~~mv~ll~~~-----~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl 226 (524)
T d2ar0a1 152 LIKTIIHLLKPQ-----PREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNC 226 (524)
T ss_dssp HHHHHHHHHCCC-----TTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHH
T ss_pred hhHhhhhcccCc-----cchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHH
Confidence 455555555544 37899999999999998776643 125899999999999998877
Q ss_pred HHcCCCCC----eEEEEcCCCCCC-CCCCCccEEEeccccC--CC-----------CC-HHHHHHHHHHhcCCCcEEEEE
Q 016921 202 AARGLADK----VSFQVGDALQQP-FPDGQFDLVWSMESGE--HM-----------PD-KSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 202 ~~~~~~~~----v~~~~~d~~~~~-~~~~~fD~V~~~~~l~--~~-----------~~-~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.-.+...+ -.+...+....+ ....+||+|+++=-+. .. .+ .-.++..+.+.|++||++.+.
T Consensus 227 ~l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiI 306 (524)
T d2ar0a1 227 LLHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVV 306 (524)
T ss_dssp HTTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEE
T ss_pred HhhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEE
Confidence 65554322 123333433211 2346799999853221 10 11 235899999999999998887
Q ss_pred ec
Q 016921 263 TW 264 (380)
Q Consensus 263 ~~ 264 (380)
..
T Consensus 307 lP 308 (524)
T d2ar0a1 307 VP 308 (524)
T ss_dssp EE
T ss_pred Ee
Confidence 63
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.31 E-value=0.0009 Score=53.46 Aligned_cols=94 Identities=23% Similarity=0.269 Sum_probs=66.3
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCCC
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDGQ 226 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~ 226 (380)
++.+||-+||| .|..+..+++..|++|+++|.++.-++.+++. +. ...+ ..+..... ...+.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~----ga--~~~~-~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNC----GA--DVTL-VVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT----TC--SEEE-ECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHc----CC--cEEE-eccccccccchhhhhhhcccccC
Confidence 48999999999 57788888887799999999999999888763 21 2222 22221111 11356
Q ss_pred ccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 227 FDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 227 fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+|+-.- .....++.+.+.|+|||++++...
T Consensus 99 ~D~vid~~------g~~~~~~~a~~~~~~~G~iv~~G~ 130 (170)
T d1e3ja2 99 PNVTIDCS------GNEKCITIGINITRTGGTLMLVGM 130 (170)
T ss_dssp CSEEEECS------CCHHHHHHHHHHSCTTCEEEECSC
T ss_pred CceeeecC------CChHHHHHHHHHHhcCCceEEEec
Confidence 89887432 124678899999999999998754
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.15 E-value=0.00064 Score=57.78 Aligned_cols=92 Identities=18% Similarity=0.204 Sum_probs=65.0
Q ss_pred HHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc---C-----CCCCeEEEEc
Q 016921 144 ETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR---G-----LADKVSFQVG 215 (380)
Q Consensus 144 ~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~---~-----~~~~v~~~~~ 215 (380)
.+.+.++++. ....+|||.-||.|..+..++.. |++|+++|-++......+..+... . ...+++++.+
T Consensus 77 ~l~kA~gl~~---~~~~~VlD~TaGlG~Da~vlA~~-G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~ 152 (250)
T d2oyra1 77 AVAKAVGIKG---DYLPDVVDATAGLGRDAFVLASV-GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHA 152 (250)
T ss_dssp HHHHHTTCBT---TBCCCEEETTCTTCHHHHHHHHH-TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEES
T ss_pred HHHHHhcCCC---CCCCEEEECCCcccHHHHHHHhC-CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecC
Confidence 3445555543 22458999999999999999986 899999999998766555443221 1 1237899999
Q ss_pred CCCCC-CCCCCCccEEEeccccCCC
Q 016921 216 DALQQ-PFPDGQFDLVWSMESGEHM 239 (380)
Q Consensus 216 d~~~~-~~~~~~fD~V~~~~~l~~~ 239 (380)
|..+. .-...+||+|+.-=++.+-
T Consensus 153 Ds~~~L~~~~~~~DvIYlDPMFp~~ 177 (250)
T d2oyra1 153 SSLTALTDITPRPQVVYLDPMFPHK 177 (250)
T ss_dssp CHHHHSTTCSSCCSEEEECCCCCCC
T ss_pred cHHHHHhccCCCCCEEEECCCCccc
Confidence 97653 2235679999987666543
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.04 E-value=0.00015 Score=58.33 Aligned_cols=96 Identities=21% Similarity=0.190 Sum_probs=65.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc-CCCCC-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG-DALQQ-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~-d~~~~-~~~~~~fD~V~~~~ 234 (380)
++.+||-+|+| .|..+..+++..|++|+++|.+++.++.+++. |. -.++.. +-.+. ....+.||+|+...
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~l----Ga---~~~i~~~~~~~~~~~~~~~~d~vi~~~ 99 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKM----GA---DHYIATLEEGDWGEKYFDTFDLIVVCA 99 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHH----TC---SEEEEGGGTSCHHHHSCSCEEEEEECC
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhcc----CC---cEEeeccchHHHHHhhhcccceEEEEe
Confidence 49999999998 67888888887799999999999988887763 32 122322 11111 11246799887643
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
...+-. .+....+.|+|+|++++...
T Consensus 100 ~~~~~~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 100 SSLTDI----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp SCSTTC----CTTTGGGGEEEEEEEEECCC
T ss_pred cCCccc----hHHHHHHHhhccceEEEecc
Confidence 322211 24567899999999998754
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.00 E-value=0.0029 Score=51.79 Aligned_cols=104 Identities=25% Similarity=0.224 Sum_probs=70.4
Q ss_pred HHcCCCCCCCCCCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---
Q 016921 147 RFAGVSEDPTKRPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--- 221 (380)
Q Consensus 147 ~~~~~~~~~~~~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--- 221 (380)
+...+++ +.+||-+|||. |..+..+++..+ .+|+++|.++.-++.|++. | ..... +..+.+
T Consensus 19 ~~a~v~~-----G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----G----a~~~~-~~~~~~~~~ 84 (195)
T d1kola2 19 VTAGVGP-----GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----G----FEIAD-LSLDTPLHE 84 (195)
T ss_dssp HHTTCCT-----TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----T----CEEEE-TTSSSCHHH
T ss_pred HHhCCCC-----CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----c----ccEEE-eCCCcCHHH
Confidence 4455554 99999999997 667777777664 5899999999999888763 2 22222 222211
Q ss_pred -----CCCCCccEEEeccccC------CC---CCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 222 -----FPDGQFDLVWSMESGE------HM---PDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 222 -----~~~~~fD~V~~~~~l~------~~---~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.....+|+++-.-... +. ......++.+.++++|||++++.-.
T Consensus 85 ~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 85 QIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp HHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred HHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 1234689888543321 11 1235789999999999999998764
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.94 E-value=0.0014 Score=58.29 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=57.7
Q ss_pred HHHHHHHHcCCCCCC-CCCCCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCC
Q 016921 141 MIEETLRFAGVSEDP-TKRPKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 141 ~~~~ll~~~~~~~~~-~~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
+++.+++.+.+.... ...+..|||||.|.|.++..+.+.. ..+|+++|+++...+..++... .+++.++.+|+.
T Consensus 25 i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~----~~~~~ii~~D~l 100 (322)
T d1i4wa_ 25 VYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFE----GSPLQILKRDPY 100 (322)
T ss_dssp HHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTT----TSSCEEECSCTT
T ss_pred HHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhcc----CCCcEEEeCchh
Confidence 566666666554311 2247789999999999999999875 3589999999999998887653 257999999986
Q ss_pred C
Q 016921 219 Q 219 (380)
Q Consensus 219 ~ 219 (380)
.
T Consensus 101 ~ 101 (322)
T d1i4wa_ 101 D 101 (322)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.86 E-value=0.0023 Score=51.64 Aligned_cols=95 Identities=19% Similarity=0.129 Sum_probs=65.7
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--------C-CCCC
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--------P-FPDG 225 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--------~-~~~~ 225 (380)
+++.+||-+|+| .|..+..+++..|+ +|+++|.++..++.+++. |. ..++...-.+. . ....
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----Ga---~~vi~~~~~~~~~~~~~i~~~~~~~ 99 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----GA---DLTLNRRETSVEERRKAIMDITHGR 99 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----TC---SEEEETTTSCHHHHHHHHHHHTTTS
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccccc----cc---eEEEeccccchHHHHHHHHHhhCCC
Confidence 358999999998 48888888988886 899999999999888752 32 12222211111 0 1234
Q ss_pred CccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+|+|+-.-.- ...++.+.+.|++||++++...
T Consensus 100 g~Dvvid~vG~------~~~~~~a~~~l~~~G~iv~~G~ 132 (182)
T d1vj0a2 100 GADFILEATGD------SRALLEGSELLRRGGFYSVAGV 132 (182)
T ss_dssp CEEEEEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred CceEEeecCCc------hhHHHHHHHHhcCCCEEEEEee
Confidence 69988743221 2467889999999999988754
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.85 E-value=0.0035 Score=49.66 Aligned_cols=92 Identities=15% Similarity=0.142 Sum_probs=61.8
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEEE
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVW 231 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~ 231 (380)
++.+||=+|+| .|..+..+++..|++|+++|.++..++.+++ .|. ..++..+-.+.. ...+.+|.|.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~----~Ga---~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARK----LGA---SLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH----TTC---SEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhc----cCc---cccccccchhHHHHHHHhhcCCccccc
Confidence 38999999998 5777788888779999999999999888765 332 233332222210 1122234443
Q ss_pred eccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 232 SMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 232 ~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.. . ...++.+.+.|+|||++++.-
T Consensus 100 ~~~------~-~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAV------S-NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCS------C-HHHHHHHHTTEEEEEEEEECC
T ss_pred ccc------c-chHHHHHHHHhcCCcEEEEEE
Confidence 322 1 356888999999999998865
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.76 E-value=0.0031 Score=50.58 Aligned_cols=94 Identities=22% Similarity=0.221 Sum_probs=65.4
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||=+|||. |..+..+++..|+ +|+++|.++.-++.+++. |. ..++...-.+.. .....+|+
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l----Ga---~~~i~~~~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY----GA---TDILNYKNGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH----TC---SEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh----Cc---cccccccchhHHHHHHHHhhccCcce
Confidence 488999999995 8888888887775 799999999988888753 32 222322211110 12345998
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.-.. ...++.+.+.++|+|++++.-.
T Consensus 100 vid~~g~------~~~~~~a~~~~~~~G~iv~~G~ 128 (174)
T d1jqba2 100 VIMAGGG------SETLSQAVKMVKPGGIISNINY 128 (174)
T ss_dssp EEECSSC------TTHHHHHHHHEEEEEEEEECCC
T ss_pred EEEccCC------HHHHHHHHHHHhcCCEEEEEee
Confidence 8754322 2467888999999999999754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.74 E-value=0.0004 Score=55.09 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=72.5
Q ss_pred CCCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccc
Q 016921 157 KRPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMES 235 (380)
Q Consensus 157 ~~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~ 235 (380)
-++.+|+=||+| .|..+...+..+|++|+.+|.+++.++..+.... .+++....+-..+.-.-...|+|+..-.
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~-----~~~~~~~~~~~~l~~~~~~aDivI~aal 104 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFG-----SRVELLYSNSAEIETAVAEADLLIGAVL 104 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHG-----GGSEEEECCHHHHHHHHHTCSEEEECCC
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhc-----ccceeehhhhhhHHHhhccCcEEEEeee
Confidence 358999999999 6888999999889999999999999988777653 3466665554333211245799987654
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
+.--+-|.-+-+++.+.+|||..++=
T Consensus 105 ipG~~aP~lIt~~mv~~Mk~GSVIVD 130 (168)
T d1pjca1 105 VPGRRAPILVPASLVEQMRTGSVIVD 130 (168)
T ss_dssp CTTSSCCCCBCHHHHTTSCTTCEEEE
T ss_pred cCCcccCeeecHHHHhhcCCCcEEEE
Confidence 43333344455789999999997664
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.71 E-value=0.0085 Score=47.54 Aligned_cols=94 Identities=17% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||=+|+|. |..+..+++..|+ +|+++|.++.-++.|++. |. -.++..+-.+.. .....+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----Ga---~~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----GA---DLVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----TC---SEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----CC---cccccccccccccccccccccCCCCc
Confidence 489999999985 6666777777676 899999999999888753 32 122222222210 012468
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+|+-.-. -...++.+.+.+++||++++...
T Consensus 99 Dvvid~~G------~~~~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 99 EVTIECTG------AEASIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp SEEEECSC------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred eEEEeccC------CchhHHHHHHHhcCCCEEEEEec
Confidence 98875432 24678999999999999999764
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.61 E-value=0.0043 Score=49.27 Aligned_cols=94 Identities=22% Similarity=0.262 Sum_probs=64.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEeccc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSMES 235 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~~ 235 (380)
++.+||=+|+| .|.++..+++..|++++++|.+++-++.+++. |. ..++...-... ....+.+|.|+-.-.
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~l----Ga---d~~i~~~~~~~~~~~~~~~D~vid~~g 102 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKAL----GA---DEVVNSRNADEMAAHLKSFDFILNTVA 102 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH----TC---SEEEETTCHHHHHTTTTCEEEEEECCS
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhcc----CC---cEEEECchhhHHHHhcCCCceeeeeee
Confidence 49999999998 47788888888899999999999887777652 32 22232221111 122357998875433
Q ss_pred cCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 236 GEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 236 l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-. ..+....+.|++||++++...
T Consensus 103 ~~------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 103 AP------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp SC------CCHHHHHTTEEEEEEEEECCC
T ss_pred cc------hhHHHHHHHHhcCCEEEEecc
Confidence 22 236678899999999998653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.51 E-value=0.0068 Score=48.31 Aligned_cols=90 Identities=17% Similarity=0.217 Sum_probs=64.9
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------CCCCCc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------FPDGQF 227 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~~~~~f 227 (380)
++.+||-.|+ |.|..+..+++..|++|++++.+++..+.+++ .|. -.++ |..+.. ...+.+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~----~Ga---~~vi--~~~~~~~~~~i~~~t~~~g~ 98 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQ----NGA---HEVF--NHREVNYIDKIKKYVGEKGI 98 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEE--ETTSTTHHHHHHHHHCTTCE
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccc----cCc---cccc--ccccccHHHHhhhhhccCCc
Confidence 4999999996 46788888898889999999999887777654 343 1222 332221 234679
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+|+... -...++...++|+|+|++++..
T Consensus 99 d~v~d~~-------g~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 99 DIIIEML-------ANVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEEESC-------HHHHHHHHHHHEEEEEEEEECC
T ss_pred eEEeecc-------cHHHHHHHHhccCCCCEEEEEe
Confidence 9988642 1356888999999999999863
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.41 E-value=0.014 Score=45.91 Aligned_cols=92 Identities=15% Similarity=0.124 Sum_probs=60.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~V 230 (380)
++.+||=.|+|. |..+..+++..+++|+++|.++.-++.+++ .|. ........+.. ...+.+|.|
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~----~Ga----~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKE----LGA----DLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHH----TTC----SEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhh----cCc----ceecccccchhhhhcccccCCCceEE
Confidence 489999999985 666677777778999999999998888765 332 11221111110 112334444
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
++. + . ...+..+.+.|+|||.+++...
T Consensus 99 ~~~-~-----~-~~~~~~a~~~l~~~G~i~~~g~ 125 (168)
T d1rjwa2 99 VTA-V-----S-KPAFQSAYNSIRRGGACVLVGL 125 (168)
T ss_dssp ESS-C-----C-HHHHHHHHHHEEEEEEEEECCC
T ss_pred eec-C-----C-HHHHHHHHHHhccCCceEeccc
Confidence 321 1 2 4678999999999999999753
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.38 E-value=0.045 Score=48.09 Aligned_cols=155 Identities=15% Similarity=0.085 Sum_probs=90.5
Q ss_pred CCEEEEECCCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc-------C-------------CCCCeEEEEcCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAAR-------G-------------LADKVSFQVGDA 217 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~-------~-------------~~~~v~~~~~d~ 217 (380)
...|+-+|||.-.....+.+.. +..++=+|. |+.++.=++.+.+. + ..++..++.+|+
T Consensus 97 ~~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~-p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL 175 (328)
T d1rjda_ 97 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 175 (328)
T ss_dssp SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CcEEEEeCCccchHHHHhhccCCCcEEEECCc-HHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCC
Confidence 5679999999988888887654 444555555 44444333333221 0 124677888888
Q ss_pred CCCC---------CCCCCccEEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEeccCCCCCCCccccchHHHHHHHH
Q 016921 218 LQQP---------FPDGQFDLVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVTWCHRDLAPSEESLQPWEQELLKK 286 (380)
Q Consensus 218 ~~~~---------~~~~~fD~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (380)
.+.. +..+..-++++-.++.+++. ..++++.+.+.. |+|.+++.|...+.. ....+...+...+..
T Consensus 176 ~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f-~~~~~i~YE~i~~~~--p~D~FG~~M~~nl~~ 252 (328)
T d1rjda_ 176 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-SHGLWISYDPIGGSQ--PNDRFGAIMQSNLKE 252 (328)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-SSEEEEEEEECCCCS--TTCCHHHHHHHHHHH
T ss_pred CCcHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhC-CCceEEEeccCCCCC--CCChHHHHHHHHHHH
Confidence 7742 22233446777788888853 467888888777 456677777543211 123455555444432
Q ss_pred Hh--hccCCCCCCCHHHHHHHHHhCCCcEEEEEec
Q 016921 287 IC--DAYYLPAWCSTADYVKLLQSLSLEDIKAEDW 319 (380)
Q Consensus 287 ~~--~~~~~~~~~~~~~~~~ll~~aGf~~v~~~~~ 319 (380)
.. ...++..+.+.+...+-+ .|+..+...+.
T Consensus 253 ~r~~~l~~~~~~~t~~~~~~r~--~~~~~~~~~dm 285 (328)
T d1rjda_ 253 SRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDM 285 (328)
T ss_dssp HHCCCCTTTTTTCSHHHHHGGG--TTSSEEEEEEH
T ss_pred hcCCCCCccccCCCHHHHHHHH--hcCCccchhhH
Confidence 21 122333456777766655 37776665544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=96.38 E-value=0.0093 Score=47.52 Aligned_cols=95 Identities=18% Similarity=0.206 Sum_probs=64.9
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-----CCCCCCccE
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-----PFPDGQFDL 229 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-----~~~~~~fD~ 229 (380)
+++.+||=+|||. |..+..+++..++ .|+++|.++.-++.+++. |. ..++..+-.+. .+.++.||+
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GA---THVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CC---eEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 3499999999984 5566777776654 678899999988888763 32 23443332221 122467998
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
|+-.- .....++.+.++++|+|++++...
T Consensus 100 vid~~------G~~~~~~~~~~~~~~~G~i~~~G~ 128 (174)
T d1f8fa2 100 ALEST------GSPEILKQGVDALGILGKIAVVGA 128 (174)
T ss_dssp EEECS------CCHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEcC------CcHHHHHHHHhcccCceEEEEEee
Confidence 87532 124678899999999999988653
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=96.27 E-value=0.065 Score=46.37 Aligned_cols=104 Identities=15% Similarity=0.100 Sum_probs=72.3
Q ss_pred CCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCC--CCeEEEEcCCCCCC--------CCCCCcc
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLA--DKVSFQVGDALQQP--------FPDGQFD 228 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~--~~v~~~~~d~~~~~--------~~~~~fD 228 (380)
...|+.+|||-=.-...+....+..++-+|. |++++.-++.+.+.+.. .+..++..|+.+.. +..+..=
T Consensus 90 ~~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~pt 168 (297)
T d2uyoa1 90 IRQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSART 168 (297)
T ss_dssp CCEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCE
T ss_pred CCeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCE
Confidence 3457779999877666663212567888885 88888878888776543 45677888877521 2223344
Q ss_pred EEEeccccCCCCC--HHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPD--KSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~--~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
++++-+++.+++. ..++++.+.+...||+.|++..
T Consensus 169 l~i~EGvl~YL~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 169 AWLAEGLLMYLPATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp EEEECSCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEEccccccCCHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 5666677888853 5789999999999999988854
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.21 E-value=0.017 Score=46.04 Aligned_cols=94 Identities=20% Similarity=0.220 Sum_probs=65.7
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCCcc
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (380)
++.+||=+|||. |..+..+++..++ .|+.+|.++.-++.+++. |. ..++...-.+.. ...+.+|
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----GA---TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----CC---CcccCCccchhhhhhhHhhhhcCCCc
Confidence 499999999996 8888889988775 799999999888877762 32 222321111110 1235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCC-cEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPA-GTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~Lkpg-G~l~~~~~ 264 (380)
+|+-.- .....+.+..+.+++| |.+++.-.
T Consensus 101 ~vie~~------G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 101 YSLDCA------GTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEEESS------CCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEEec------ccchHHHHHHHHhhcCCeEEEecCC
Confidence 887432 2246799999999997 99988653
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.17 E-value=0.023 Score=44.74 Aligned_cols=94 Identities=19% Similarity=0.229 Sum_probs=64.4
Q ss_pred CCCEEEEECC-C-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 158 RPKNVVDVGC-G-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGc-G-tG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
++.+||=+|+ | .|..+..+++..+ ..|+++|.++.-++.+++. |. ..++..+-.+.. ...+.||
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----GA---DYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----CC---ceeeccCCcCHHHHHHHHhhcccch
Confidence 4899999996 4 5666677777665 6999999999988888763 32 123333322210 1245699
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+|+-... -...++.+.+.++|||++++.-+
T Consensus 100 ~vid~~g------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLNN------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESCC------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhcccc------cchHHHhhhhhcccCCEEEEecc
Confidence 8886432 24567888999999999988754
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.10 E-value=0.022 Score=45.08 Aligned_cols=94 Identities=17% Similarity=0.116 Sum_probs=63.8
Q ss_pred CCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEE
Q 016921 158 RPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (380)
Q Consensus 158 ~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V 230 (380)
++.+||=+|+|. |..+..+++..+ ..|+++|.+++-++.+++. +. ..++..+-.... .....+|+|
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----ga---~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----GA---DHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----TC---SEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----cc---ceeecCcccHHHHHHHhhCCCCceEE
Confidence 488999999984 556677777664 6889999999888887752 21 233332211110 123568988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+-... ....++...+.|++||++++.-+
T Consensus 105 id~~g------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFVG------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESSC------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEecC------cchHHHHHHHHHhCCCEEEEEeC
Confidence 75432 23568999999999999998754
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=95.69 E-value=0.015 Score=49.04 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAA 202 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~ 202 (380)
.+++.++.... .++..|||.=||+|..+.+..+. +.+.+|+|++++..+.|++++.
T Consensus 200 ~L~~~lI~~~s------~~gd~VlDpF~GSGTT~~aa~~~-~R~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 200 DLIERIIRASS------NPNDLVLDCFMGSGTTAIVAKKL-GRNFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHHHC------CTTCEEEESSCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhC------CCCCEEEECCCCchHHHHHHHHc-CCeEEEEeCCHHHHHHHHHHHc
Confidence 46777777664 34899999999999999877664 9999999999999999999874
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.31 E-value=0.024 Score=45.13 Aligned_cols=92 Identities=16% Similarity=0.164 Sum_probs=63.5
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||=.|. |.|..+..+++..++++++++-+++..+.+++ .|. -.++...-.++. .....||+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~----~Ga---~~vi~~~~~~~~~~v~~~t~~~g~d~ 97 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSR----LGV---EYVGDSRSVDFADEILELTDGYGVDV 97 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHT----TCC---SEEEETTCSTHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeeccccccccccc----ccc---cccccCCccCHHHHHHHHhCCCCEEE
Confidence 4889998773 36788888888779999999988887776654 332 122222212210 23467999
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+..-. ...++.+.++|+++|+++...
T Consensus 98 v~d~~g-------~~~~~~~~~~l~~~G~~v~~G 124 (183)
T d1pqwa_ 98 VLNSLA-------GEAIQRGVQILAPGGRFIELG 124 (183)
T ss_dssp EEECCC-------THHHHHHHHTEEEEEEEEECS
T ss_pred EEeccc-------chHHHHHHHHhcCCCEEEEEc
Confidence 986432 246788899999999998853
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.25 E-value=0.018 Score=45.95 Aligned_cols=97 Identities=12% Similarity=0.132 Sum_probs=63.7
Q ss_pred CCCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC-CCCCCCccEEEecc
Q 016921 158 RPKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ-PFPDGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~~~~fD~V~~~~ 234 (380)
++.+||=.|. |.|.++..+++..|++|+++.-+++-.+.+++. |...-+.....+.+.. ....+.+|+|+-.-
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~l----Ga~~vi~~~~~~~~~~~~~~~~gvD~vid~v 106 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVL----GAKEVLAREDVMAERIRPLDKQRWAAAVDPV 106 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHT----TCSEEEECC---------CCSCCEEEEEECS
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhc----ccceeeecchhHHHHHHHhhccCcCEEEEcC
Confidence 3788998884 467788899988899999999998888777653 3211111111111111 12356899887532
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
. ...+....++|+|||++++.-..
T Consensus 107 g-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 107 G-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp T-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred C-------chhHHHHHHHhCCCceEEEeecc
Confidence 2 23478899999999999987654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.21 E-value=0.013 Score=46.78 Aligned_cols=100 Identities=19% Similarity=0.226 Sum_probs=64.1
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE----------cCCCCCC--CC-
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQV----------GDALQQP--FP- 223 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~----------~d~~~~~--~~- 223 (380)
++.+||=||+| .|..+...|..+|++|+.+|.++..++..+..... .+.+.. +.+..+. +.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~-----~i~~~~~~~~~~~~~~gyA~~~s~~~~~ 102 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGK-----FITVDDEAMKTAETAGGYAKEMGEEFRK 102 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCE-----ECCC-----------------------C
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcc-----eEEEeccccccccccccchhhcCHHHHH
Confidence 47899999999 58888888988899999999999888777654311 111100 0111110 00
Q ss_pred ---------CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 224 ---------DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 224 ---------~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
-...|+|+..-.+..-+-|.-+-+++.+.+|||..++=.
T Consensus 103 ~~~~~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDv 150 (183)
T d1l7da1 103 KQAEAVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDL 150 (183)
T ss_dssp CHHHHHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEET
T ss_pred HHHHHHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEE
Confidence 125798887655544333434557899999999976643
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=95.13 E-value=0.017 Score=50.31 Aligned_cols=57 Identities=14% Similarity=0.103 Sum_probs=47.5
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHH
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAA 203 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~ 203 (380)
.++++++.... .++..|||.=||+|..+.+..+. |.+.+|+|++++..+.|++++.+
T Consensus 238 ~L~~rlI~~~s------~~gdiVlDpF~GSGTT~~AA~~l-gR~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 238 KLPEFFIRMLT------EPDDLVVDIFGGSNTTGLVAERE-SRKWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHHHC------CTTCEEEETTCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHhhhhcc------cCCCEEEecCCCCcHHHHHHHHc-CCcEEEEeCCHHHHHHHHHHHHh
Confidence 46777777654 35899999999999999887764 99999999999999999887643
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.12 E-value=0.029 Score=47.75 Aligned_cols=58 Identities=19% Similarity=0.184 Sum_probs=49.2
Q ss_pred HHHHHHHHHcCCCCCCCCCCCEEEEECCCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc
Q 016921 140 RMIEETLRFAGVSEDPTKRPKNVVDVGCGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAAR 204 (380)
Q Consensus 140 ~~~~~ll~~~~~~~~~~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~ 204 (380)
.+++.++.... .++..|||.=||+|..+.+..+. +.+.+|+|+++...+.|++++...
T Consensus 195 ~L~~~~I~~~s------~~gdiVLDpF~GSGTT~~Aa~~l-gR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 195 AVIERLVRALS------HPGSTVLDFFAGSGVTARVAIQE-GRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHHS------CTTCEEEETTCTTCHHHHHHHHH-TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred hHHHHHHHhhc------CCCCEEEecCCCCcHHHHHHHHh-CCeEEEEeCCHHHHHHHHHHHHHh
Confidence 46777777654 24899999999999998887775 999999999999999999998754
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.67 E-value=0.13 Score=40.44 Aligned_cols=92 Identities=14% Similarity=0.035 Sum_probs=63.7
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++.+||=.|+| .|..+..+++..|++|++++.+++-.+.+++. |. -.++..+-.++. -....+|+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~l----Ga---~~vi~~~~~d~~~~v~~~t~g~g~d~ 100 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKA----GA---WQVINYREEDLVERLKEITGGKKVRV 100 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH----TC---SEEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhc----CC---eEEEECCCCCHHHHHHHHhCCCCeEE
Confidence 48899998665 57788888888899999999999998887753 32 122322212210 12467898
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-.-.- ..+......++++|++++..
T Consensus 101 v~d~~g~-------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 101 VYDSVGR-------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EEECSCG-------GGHHHHHHTEEEEEEEEECC
T ss_pred EEeCccH-------HHHHHHHHHHhcCCeeeecc
Confidence 8754322 35678999999999987754
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.64 E-value=0.0092 Score=47.42 Aligned_cols=89 Identities=20% Similarity=0.254 Sum_probs=60.2
Q ss_pred CCCEEEEECC-C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 158 RPKNVVDVGC-G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 158 ~~~~vLDiGc-G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
++.+||=.|. | .|..+..+++..|++|++++.+++..+.+++ .|.. .++ |..+.. ...+.+|+|+-
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~----lGa~---~~i--~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLA----LGAE---EAA--TYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHH----TTCS---EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccc----cccc---eee--ehhhhhhhhhcccccccccc
Confidence 4899999884 4 4778888888889999999999887777664 3432 111 222211 12356998875
Q ss_pred ccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 233 MESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 233 ~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
... ..+....+.|+|||++++.-
T Consensus 98 ~~G--------~~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 VRG--------KEVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp CSC--------TTHHHHHTTEEEEEEEEEC-
T ss_pred ccc--------hhHHHHHHHHhcCCcEEEEe
Confidence 321 13567889999999988753
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.15 Score=42.85 Aligned_cols=79 Identities=13% Similarity=0.082 Sum_probs=59.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++.+|=.|++.| .+..+++.+ |++|+++|.+++.++.+.+.+...+...++.++++|+.+.. -.-+
T Consensus 10 ~Kv~lITGas~G-IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~g 88 (257)
T d1xg5a_ 10 DRLALVTGASGG-IGAAVARALVQQGLKVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQHS 88 (257)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhcC
Confidence 678888887755 455555544 89999999999999998888887776668889999998731 0125
Q ss_pred CccEEEeccccCC
Q 016921 226 QFDLVWSMESGEH 238 (380)
Q Consensus 226 ~fD~V~~~~~l~~ 238 (380)
..|+++.+....+
T Consensus 89 ~iD~lVnnAg~~~ 101 (257)
T d1xg5a_ 89 GVDICINNAGLAR 101 (257)
T ss_dssp CCSEEEECCCCCC
T ss_pred CCCEEEecccccC
Confidence 7899887655544
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=94.41 E-value=0.2 Score=39.31 Aligned_cols=95 Identities=15% Similarity=0.119 Sum_probs=60.5
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCCc
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQF 227 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~f 227 (380)
+++.+||=+|||. |..+..+++..+ .+|+++|.++.-++.+++ .|. ..++...-.+.. ..++.+
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~----lGa---~~~i~~~~~d~~~~~~~~~~~~~G~ 98 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----LGA---TECLNPKDYDKPIYEVICEKTNGGV 98 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----TTC---SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHH----cCC---cEEEcCCCchhHHHHHHHHhcCCCC
Confidence 3499999999984 556666777665 589999999999888876 332 223321111110 123568
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCC-CcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAP-AGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~Lkp-gG~l~~~~~ 264 (380)
|.|+-.-. . ...+......+++ +|.+++.-.
T Consensus 99 d~vid~~g-----~-~~~~~~~~~~~~~~~G~~v~vG~ 130 (174)
T d1p0fa2 99 DYAVECAG-----R-IETMMNALQSTYCGSGVTVVLGL 130 (174)
T ss_dssp SEEEECSC-----C-HHHHHHHHHTBCTTTCEEEECCC
T ss_pred cEEEEcCC-----C-chHHHHHHHHHHHhcCceEEEEE
Confidence 88875322 2 3556666666655 588888664
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=94.11 E-value=0.28 Score=38.65 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=63.8
Q ss_pred CCCEEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC------CCCCCCccE
Q 016921 158 RPKNVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ------PFPDGQFDL 229 (380)
Q Consensus 158 ~~~~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------~~~~~~fD~ 229 (380)
++.+||=.|++ .|..+..+++..|++|++++-+++..+.+++ .|. -.++.-+-++. ....+.+|+
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~----~Ga---~~vi~~~~~~~~~~~~~~~~~~Gvd~ 101 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQ----IGF---DAAFNYKTVNSLEEALKKASPDGYDC 101 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH----TTC---SEEEETTSCSCHHHHHHHHCTTCEEE
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHh----hhh---hhhcccccccHHHHHHHHhhcCCCce
Confidence 49999988875 4667788888889999999999987777665 332 22233222221 013456998
Q ss_pred EEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 230 VWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 230 V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
|+-.- . .+.++...+.|++||.+++.-
T Consensus 102 v~D~v-----G--~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 102 YFDNV-----G--GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EEESS-----C--HHHHHHHGGGEEEEEEEEECC
T ss_pred eEEec-----C--chhhhhhhhhccCCCeEEeec
Confidence 87432 1 357889999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=93.54 E-value=0.16 Score=40.02 Aligned_cols=95 Identities=19% Similarity=0.166 Sum_probs=59.7
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCCC------CCCCCc
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQP------FPDGQF 227 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~~------~~~~~f 227 (380)
+++..||=+|||. |..+..+++..+ .+|+++|.+++-++.|++.-. ..++. .+..... .....+
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA-------~~~in~~~~~~~~~~~~~~~~g~G~ 100 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGA-------TECISPKDSTKPISEVLSEMTGNNV 100 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTC-------SEEECGGGCSSCHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCC-------cEEECccccchHHHHHHHHhccccc
Confidence 3499999999984 666777777776 689999999999999887432 22222 1111110 123568
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhc-CCCcEEEEEec
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVT-APAGTIIIVTW 264 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~L-kpgG~l~~~~~ 264 (380)
|.|+-... . ...++.....+ +.+|.+++.-.
T Consensus 101 d~vi~~~g-----~-~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 101 GYTFEVIG-----H-LETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp CEEEECSC-----C-HHHHHHHHTTSCTTTCEEEECSC
T ss_pred eEEEEeCC-----c-hHHHHHHHHHhhcCCeEEEEEEc
Confidence 87765322 2 34445555555 55588888654
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=93.37 E-value=0.25 Score=36.63 Aligned_cols=87 Identities=20% Similarity=0.143 Sum_probs=55.5
Q ss_pred EEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEec
Q 016921 161 NVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSM 233 (380)
Q Consensus 161 ~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~ 233 (380)
+|+=+|+ |.++..+++.+ |..|+++|.+++.++.++... .+.++.+|+.+.. ..-+..|.+++.
T Consensus 2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 5666666 66666666654 789999999999887765421 4678999988742 223567888763
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEE
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTI 259 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l 259 (380)
..- .+....+....+.+.+...+
T Consensus 73 t~~---d~~N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 73 TGK---EEVNLMSSLLAKSYGINKTI 95 (132)
T ss_dssp CSC---HHHHHHHHHHHHHTTCCCEE
T ss_pred CCc---HHHHHHHHHHHHHcCCceEE
Confidence 211 11233445566677777443
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=92.85 E-value=0.34 Score=42.90 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=34.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc--------CCEEEEEeCCHHHHHHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF--------GAKCQGITLSPVQAQRANALAA 202 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~--------~~~v~giD~s~~~~~~a~~~~~ 202 (380)
..+|+|+|+|+|.++..+.... ...++.++.|+...+.-++.+.
T Consensus 80 ~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~ 131 (365)
T d1zkda1 80 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA 131 (365)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST
T ss_pred cceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc
Confidence 6789999999999998887653 2468999999987766665543
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=92.74 E-value=0.061 Score=45.13 Aligned_cols=105 Identities=18% Similarity=0.138 Sum_probs=72.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc-----------------------------------------CCEEEEEeCCHHHHHHH
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF-----------------------------------------GAKCQGITLSPVQAQRA 197 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~-----------------------------------------~~~v~giD~s~~~~~~a 197 (380)
+..++|--||+|.+.+..+-.. ...++|.|+++.+++.|
T Consensus 51 ~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A 130 (249)
T d1o9ga_ 51 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAA 130 (249)
T ss_dssp CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred CCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHH
Confidence 6679999999999998877521 01367999999999888
Q ss_pred ---HHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEEEeccc----cCCCC-----CHHHHHHHHHHhcCCCcEEE
Q 016921 198 ---NALAAARGLADKVSFQVGDALQQP-----FPDGQFDLVWSMES----GEHMP-----DKSKFVSELARVTAPAGTII 260 (380)
Q Consensus 198 ---~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V~~~~~----l~~~~-----~~~~~l~~~~r~LkpgG~l~ 260 (380)
++++...|+...+.+.+.|+.+.. .+....++|+++=- +..-. ....+...+.+++.....++
T Consensus 131 ~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~~ 210 (249)
T d1o9ga_ 131 RRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVIA 210 (249)
T ss_dssp HHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred HHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEEE
Confidence 457888899889999999987642 12456789998521 11111 12455566777786555566
Q ss_pred EEe
Q 016921 261 IVT 263 (380)
Q Consensus 261 ~~~ 263 (380)
++.
T Consensus 211 it~ 213 (249)
T d1o9ga_ 211 VTD 213 (249)
T ss_dssp EEE
T ss_pred EeC
Confidence 654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.67 E-value=0.46 Score=36.87 Aligned_cols=93 Identities=16% Similarity=0.217 Sum_probs=61.5
Q ss_pred CCCEEEEECCC-cChHHHHHHHHcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-------CCCCCcc
Q 016921 158 RPKNVVDVGCG-IGGSSRYLAKKFG-AKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcG-tG~~~~~l~~~~~-~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-------~~~~~fD 228 (380)
++.+||=+||| .|.++..+++..+ ..|+++|.++.-++.+++. |. ..++..+-...+ ...+.+|
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l----Ga---~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF----GA---TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH----TC---SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh----CC---cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 49999999987 4556677777665 6899999999888877753 32 222222111111 1235689
Q ss_pred EEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 229 LVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 229 ~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+|+-.-. ....++.+...+++||.+++..
T Consensus 101 ~vid~~G------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIG------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSC------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCC------CHHHHHHHHHhhcCCceeEEEE
Confidence 8875432 2467888999999998877654
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.97 E-value=0.22 Score=41.63 Aligned_cols=84 Identities=18% Similarity=0.128 Sum_probs=60.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++.+|=-|++. .++..+++.+ |++|+.+|.+++.++.+.+.+.+.....++.++.+|+.+.. -.-+
T Consensus 3 GKvalITGas~-GIG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQ-GIGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 67788888654 4555565554 89999999999988887776655433457889999998742 0125
Q ss_pred CccEEEeccccCCCCCHH
Q 016921 226 QFDLVWSMESGEHMPDKS 243 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~~ 243 (380)
.+|+++.+.......+++
T Consensus 82 ~iDilVnnAg~~~~~~~~ 99 (254)
T d2gdza1 82 RLDILVNNAGVNNEKNWE 99 (254)
T ss_dssp CCCEEEECCCCCCSSSHH
T ss_pred CcCeecccccccccccch
Confidence 799999887777766654
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.89 E-value=0.3 Score=37.82 Aligned_cols=89 Identities=20% Similarity=0.231 Sum_probs=55.8
Q ss_pred EEEEECCCc--ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccC
Q 016921 161 NVVDVGCGI--GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGE 237 (380)
Q Consensus 161 ~vLDiGcGt--G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~ 237 (380)
+|+=||||. |.++..+.+.. ..+|+|+|.+++.++.+++. +. +.....+.... .....|+|+..--.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----~~---~~~~~~~~~~~--~~~~~dlIila~p~- 72 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GI---IDEGTTSIAKV--EDFSPDFVMLSSPV- 72 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TS---CSEEESCGGGG--GGTCCSEEEECSCH-
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----hc---chhhhhhhhhh--hccccccccccCCc-
Confidence 578899983 44555665542 35899999999999887762 22 22222222221 23457888865322
Q ss_pred CCCCHHHHHHHHHHhcCCCcEEEE
Q 016921 238 HMPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 238 ~~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
.....++.++...++++..+.-
T Consensus 73 --~~~~~vl~~l~~~~~~~~ii~d 94 (171)
T d2g5ca2 73 --RTFREIAKKLSYILSEDATVTD 94 (171)
T ss_dssp --HHHHHHHHHHHHHSCTTCEEEE
T ss_pred --hhhhhhhhhhhccccccccccc
Confidence 2346788899999988765544
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.28 Score=41.43 Aligned_cols=103 Identities=17% Similarity=0.132 Sum_probs=71.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C--CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF----GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F--PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~----~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~--~~ 224 (380)
+.+|-=|-.|++.++..+++.+ ++.|+..+.+++.++.+.+.+...+ .++.++.+|+.+.. . .-
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dvs~~~sv~~~~~~~~~~~ 79 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEG--LSPRFHQLDIDDLQSIRALRDFLRKEY 79 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTT--CCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEEecCCHHHHHHHHHHHHHhc
Confidence 5677555555555555555433 6899999999999998888887766 46899999998742 0 12
Q ss_pred CCccEEEeccccCCCC---C-----H-----------HHHHHHHHHhcCCCcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMP---D-----K-----------SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~---~-----~-----------~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+.+|+++.+..+.+.. + . -.+.+.+...|+++|+++...
T Consensus 80 g~iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 80 GGLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp SSEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCcEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 5799999876654331 1 1 135667778889999987764
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=91.14 E-value=0.96 Score=34.99 Aligned_cols=94 Identities=16% Similarity=0.143 Sum_probs=59.3
Q ss_pred CCCCEEEEECCCc-ChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEE-cCCCCC------CCCCCCc
Q 016921 157 KRPKNVVDVGCGI-GGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQV-GDALQQ------PFPDGQF 227 (380)
Q Consensus 157 ~~~~~vLDiGcGt-G~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~-~d~~~~------~~~~~~f 227 (380)
+++.+||=+|+|. |..+..+++.. +..|+++|.+++-++.+++. |. ..++. .+..+. ....+.+
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----Ga---~~~i~~~~~~~~~~~~~~~~~~~G~ 99 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----GA---TECVNPQDYKKPIQEVLTEMSNGGV 99 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----TC---SEEECGGGCSSCHHHHHHHHTTSCB
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----CC---eeEEecCCchhHHHHHHHHHhcCCC
Confidence 3499999999974 44556666666 47999999999988887663 32 22222 122221 0123578
Q ss_pred cEEEeccccCCCCCHHHHHHHHHHhcCCCc-EEEEEe
Q 016921 228 DLVWSMESGEHMPDKSKFVSELARVTAPAG-TIIIVT 263 (380)
Q Consensus 228 D~V~~~~~l~~~~~~~~~l~~~~r~LkpgG-~l~~~~ 263 (380)
|+|+-.... ...++.+...+++|| .+++..
T Consensus 100 D~vid~~G~------~~~~~~a~~~~~~~~g~~~~~~ 130 (176)
T d2jhfa2 100 DFSFEVIGR------LDTMVTALSCCQEAYGVSVIVG 130 (176)
T ss_dssp SEEEECSCC------HHHHHHHHHHBCTTTCEEEECS
T ss_pred CEEEecCCc------hhHHHHHHHHHhcCCcceEEec
Confidence 988764332 356777888888875 555543
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=90.98 E-value=0.11 Score=41.51 Aligned_cols=96 Identities=11% Similarity=0.074 Sum_probs=58.2
Q ss_pred CCCEEEEECC--C-cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEc---CCCCCC--------CC
Q 016921 158 RPKNVVDVGC--G-IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVG---DALQQP--------FP 223 (380)
Q Consensus 158 ~~~~vLDiGc--G-tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~---d~~~~~--------~~ 223 (380)
++.+||=+.+ | .|..+..+++..|++|+++--++...+...+.+++.|.. .++.- |..+.. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad---~vi~~~~~~~~~~~~~v~~~~~~~ 104 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGAT---QVITEDQNNSREFGPTIKEWIKQS 104 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCS---EEEEHHHHHCGGGHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhcccc---EEEeccccchhHHHHHHHHHHhhc
Confidence 4777877733 3 467788888888999998865554444444445555532 22222 221110 01
Q ss_pred CCCccEEEeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 224 DGQFDLVWSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.+.+|+|+-. +. ...+..+.+.|+|||++++.-
T Consensus 105 g~~vdvv~D~-----vg--~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 105 GGEAKLALNC-----VG--GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp TCCEEEEEES-----SC--HHHHHHHHHTSCTTCEEEECC
T ss_pred cCCceEEEEC-----CC--cchhhhhhhhhcCCcEEEEEC
Confidence 3468887732 22 345678899999999998754
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=90.89 E-value=0.42 Score=36.77 Aligned_cols=86 Identities=15% Similarity=0.122 Sum_probs=53.7
Q ss_pred EEEEECCC--cChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCCCCCccEEEeccccCC
Q 016921 161 NVVDVGCG--IGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFPDGQFDLVWSMESGEH 238 (380)
Q Consensus 161 ~vLDiGcG--tG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~l~~ 238 (380)
+|.=||+| .+.++..+.+. |.+|++.|.+++.++.+++ .+. +.....+.+. -...|+|+..--
T Consensus 2 kI~iIG~G~mG~~lA~~l~~~-g~~V~~~d~~~~~~~~a~~----~~~---~~~~~~~~~~----~~~~DiIilavp--- 66 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRRR-GHYLIGVSRQQSTCEKAVE----RQL---VDEAGQDLSL----LQTAKIIFLCTP--- 66 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----TTS---CSEEESCGGG----GTTCSEEEECSC---
T ss_pred EEEEEeecHHHHHHHHHHHHC-CCEEEEEECCchHHHHHHH----hhc---cceeeeeccc----ccccccccccCc---
Confidence 57778887 33455555554 8899999999988777654 232 2112222222 146798876331
Q ss_pred CCCHHHHHHHHHHhcCCCcEEEE
Q 016921 239 MPDKSKFVSELARVTAPAGTIII 261 (380)
Q Consensus 239 ~~~~~~~l~~~~r~LkpgG~l~~ 261 (380)
......+++++...|+++..++-
T Consensus 67 ~~~~~~vl~~l~~~l~~~~iv~~ 89 (165)
T d2f1ka2 67 IQLILPTLEKLIPHLSPTAIVTD 89 (165)
T ss_dssp HHHHHHHHHHHGGGSCTTCEEEE
T ss_pred Hhhhhhhhhhhhhhcccccceee
Confidence 12346788899888888876544
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.76 E-value=0.099 Score=40.99 Aligned_cols=94 Identities=18% Similarity=0.181 Sum_probs=62.5
Q ss_pred CCEEEEEC--CCcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCC--CCC-CCCCCCccEEEec
Q 016921 159 PKNVVDVG--CGIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDA--LQQ-PFPDGQFDLVWSM 233 (380)
Q Consensus 159 ~~~vLDiG--cGtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~--~~~-~~~~~~fD~V~~~ 233 (380)
+..||=-| .|.|..+..+++..|++|+++.-+++..+.+++. |.. .+ +...|. ... ....+.+|+|+-.
T Consensus 24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~l----Gad-~v-i~~~~~~~~~~~~~~~~gvd~vid~ 97 (167)
T d1tt7a2 24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQL----GAS-EV-ISREDVYDGTLKALSKQQWQGAVDP 97 (167)
T ss_dssp GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHH----TCS-EE-EEHHHHCSSCCCSSCCCCEEEEEES
T ss_pred CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhh----ccc-ce-EeccchhchhhhcccCCCceEEEec
Confidence 55688766 3467788889998899999999998877776653 321 12 111111 111 2234679987643
Q ss_pred cccCCCCCHHHHHHHHHHhcCCCcEEEEEecc
Q 016921 234 ESGEHMPDKSKFVSELARVTAPAGTIIIVTWC 265 (380)
Q Consensus 234 ~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 265 (380)
+. ...+.+..+.|+|+|++++.-..
T Consensus 98 -----vg--g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 98 -----VG--GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp -----CC--THHHHHHHTTEEEEEEEEECCCS
T ss_pred -----Cc--HHHHHHHHHHhccCceEEEeecc
Confidence 21 35788999999999999987543
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.70 E-value=0.9 Score=37.50 Aligned_cols=79 Identities=19% Similarity=0.109 Sum_probs=57.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
.|..+|=-|++.|. +..++..+ |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -..
T Consensus 6 ~Gkv~lITGas~GI-G~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dvs~~~~v~~~~~~i~~~~ 82 (244)
T d1yb1a_ 6 TGEIVLITGAGHGI-GRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLG--AKVHTFVVDCSNREDIYSSAKKVKAEI 82 (244)
T ss_dssp TTCEEEEETTTSHH-HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCcHH-HHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 36777777766654 44444444 8999999999999988888877655 57899999998742 123
Q ss_pred CCccEEEeccccCCC
Q 016921 225 GQFDLVWSMESGEHM 239 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~ 239 (380)
+..|+++.+..+.+.
T Consensus 83 g~idilinnag~~~~ 97 (244)
T d1yb1a_ 83 GDVSILVNNAGVVYT 97 (244)
T ss_dssp CCCSEEEECCCCCCC
T ss_pred CCCceeEeecccccc
Confidence 678998877666554
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.50 E-value=0.51 Score=34.77 Aligned_cols=88 Identities=10% Similarity=0.092 Sum_probs=51.5
Q ss_pred EEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCC----CCCCccEEEecc
Q 016921 162 VVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPF----PDGQFDLVWSME 234 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----~~~~fD~V~~~~ 234 (380)
++=+|+ |.++..+++.+ |..|+.+|.+++.++.++. .....+.+|+.+... .-...|.|++..
T Consensus 3 ~iIiG~--G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~--------~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~ 72 (134)
T d2hmva1 3 FAVIGL--GRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS--------YATHAVIANATEENELLSLGIRNFEYVIVAI 72 (134)
T ss_dssp EEEECC--SHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT--------TCSEEEECCTTCTTHHHHHTGGGCSEEEECC
T ss_pred EEEECC--CHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH--------hCCcceeeecccchhhhccCCccccEEEEEc
Confidence 344455 66666666655 8899999999998877642 235677889877531 123567666532
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEE
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIV 262 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~ 262 (380)
.= .+....+-...+.+.+...++..
T Consensus 73 ~~---~~~~~~~~~~~~~~~~~~~iiar 97 (134)
T d2hmva1 73 GA---NIQASTLTTLLLKELDIPNIWVK 97 (134)
T ss_dssp CS---CHHHHHHHHHHHHHTTCSEEEEE
T ss_pred Cc---hHHhHHHHHHHHHHcCCCcEEee
Confidence 11 11223333444445566666553
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.30 E-value=1.3 Score=34.77 Aligned_cols=92 Identities=12% Similarity=0.102 Sum_probs=58.3
Q ss_pred CCEEEEEC--CCcChHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEE
Q 016921 159 PKNVVDVG--CGIGGSSRYLAKKFGA-KCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (380)
Q Consensus 159 ~~~vLDiG--cGtG~~~~~l~~~~~~-~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V 230 (380)
+.+||=.| .|.|..+..+++..|+ .|++++.+++......+ ..|. ..++...-+++. ..++.+|+|
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~~ga---d~vi~~~~~~~~~~~~~~~~~GvDvv 104 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---ELGF---DAAVNYKTGNVAEQLREACPGGVDVY 104 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---HSCC---SEEEETTSSCHHHHHHHHCTTCEEEE
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---cccc---eEEeeccchhHHHHHHHHhccCceEE
Confidence 37798877 4589999999998876 57777877765443322 2232 222322221210 123569988
Q ss_pred EeccccCCCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 231 WSMESGEHMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 231 ~~~~~l~~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
+-.- . ...+....+.|++||++++.-
T Consensus 105 ~D~v-----G--g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 105 FDNV-----G--GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EESS-----C--HHHHHHHHTTEEEEEEEEEC-
T ss_pred EecC-----C--chhHHHHhhhccccccEEEec
Confidence 7432 1 357889999999999998754
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=88.77 E-value=0.28 Score=38.58 Aligned_cols=92 Identities=14% Similarity=0.226 Sum_probs=61.3
Q ss_pred CCEEEEECC--CcChHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCC--CCCCCCccEEEecc
Q 016921 159 PKNVVDVGC--GIGGSSRYLAKKFGAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQ--PFPDGQFDLVWSME 234 (380)
Q Consensus 159 ~~~vLDiGc--GtG~~~~~l~~~~~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~fD~V~~~~ 234 (380)
+.+||=.|. |.|..+..+++..|++|+++.-+++..+.+++. |. -.++.-+-.+. .+....+|.|+-
T Consensus 32 ~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l----Ga---d~vi~~~~~~~~~~l~~~~~~~vvD-- 102 (177)
T d1o89a2 32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL----GA---SRVLPRDEFAESRPLEKQVWAGAID-- 102 (177)
T ss_dssp GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH----TE---EEEEEGGGSSSCCSSCCCCEEEEEE--
T ss_pred CCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh----cc---ccccccccHHHHHHHHhhcCCeeEE--
Confidence 457776553 367788888888899999999999888777653 21 22232221111 234466787652
Q ss_pred ccCCCCCHHHHHHHHHHhcCCCcEEEEEec
Q 016921 235 SGEHMPDKSKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 235 ~l~~~~~~~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
.+. ...+.+..+.|+++|++++.-.
T Consensus 103 ---~Vg--g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 103 ---TVG--DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp ---SSC--HHHHHHHHHTEEEEEEEEECCC
T ss_pred ---Ecc--hHHHHHHHHHhccccceEeecc
Confidence 222 3578999999999999998754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=88.68 E-value=1 Score=38.29 Aligned_cols=67 Identities=13% Similarity=0.049 Sum_probs=49.2
Q ss_pred CEEEEECCCcChHHHHHHHHcCCEE-EEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 016921 160 KNVVDVGCGIGGSSRYLAKKFGAKC-QGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSME 234 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~~~~v-~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~ 234 (380)
.+|||+=||.|.+..-+.+. |.++ .++|+++...+.-+.+. + -.+..+|+.++... -..+|+++...
T Consensus 1 mk~~~lF~G~Gg~~~gl~~a-G~~~~~a~e~d~~a~~~~~~N~-----~--~~~~~~Di~~~~~~~~~~~dll~~g~ 69 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKA-GFRIICANEYDKSIWKTYESNH-----S--AKLIKGDISKISSDEFPKCDGIIGGP 69 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHH-TCEEEEEEECCHHHHHHHHHHC-----C--SEEEESCTTTSCGGGSCCCSEEEECC
T ss_pred CeEEEeCcCcCHHHHHHHHC-CCEEEEEEeCCHHHHHHHHHHC-----C--CCCccCChhhCCHhHcccccEEeecc
Confidence 37999999999999888766 6554 49999998887766543 2 35678899887421 23689998643
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.72 E-value=1.7 Score=35.95 Aligned_cols=104 Identities=20% Similarity=0.088 Sum_probs=71.2
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEE-eCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGI-TLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FP 223 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~gi-D~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~ 223 (380)
.|++||=.| |++.++..+++.+ |++|+.. +.+...++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 5 ~GK~alITG-as~GIG~aia~~la~~G~~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~ 81 (259)
T d1ja9a_ 5 AGKVALTTG-AGRGIGRGIAIELGRRGASVVVNYGSSSKAAEEVVAELKKLG--AQGVAIQADISKPSEVVALFDKAVSH 81 (259)
T ss_dssp TTCEEEETT-TTSHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeC-CCCHHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHHcC--CCceEecCCCCCHHHHHHHHHHHHHH
Confidence 377888666 5666666666655 7888865 567777788788777766 47889999997631 11
Q ss_pred CCCccEEEeccccCCCCCH-------------------HHHHHHHHHhcCCCcEEEEEec
Q 016921 224 DGQFDLVWSMESGEHMPDK-------------------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~~~~~-------------------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
-+..|+++.+..+.+..+. -...+.+...++.+|.+++...
T Consensus 82 ~g~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii~s 141 (259)
T d1ja9a_ 82 FGGLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILTSS 141 (259)
T ss_dssp HSCEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEECC
T ss_pred cCCCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccccc
Confidence 2579999887766654321 1356677788888887766543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=87.67 E-value=0.67 Score=33.95 Aligned_cols=84 Identities=13% Similarity=0.047 Sum_probs=57.8
Q ss_pred CCcChHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----CCCCCccEEEeccccCCCCC
Q 016921 167 CGIGGSSRYLAKKF-GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----FPDGQFDLVWSMESGEHMPD 241 (380)
Q Consensus 167 cGtG~~~~~l~~~~-~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~~~~fD~V~~~~~l~~~~~ 241 (380)
||.|..+..+++.+ +..++.+|.++...+..+. .++.++.+|+.+.. ..-+..+.+++.. ++
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~--------~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~-----~~ 72 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR--------SGANFVHGDPTRVSDLEKANVRGARAVIVNL-----ES 72 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH--------TTCEEEESCTTSHHHHHHTTCTTCSEEEECC-----SS
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh--------cCccccccccCCHHHHHHhhhhcCcEEEEec-----cc
Confidence 56688899999887 6778999999988766543 35789999987732 2234577777632 23
Q ss_pred H--HHHHHHHHHhcCCCcEEEEEe
Q 016921 242 K--SKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 242 ~--~~~l~~~~r~LkpgG~l~~~~ 263 (380)
. ...+-...+.+.|...++...
T Consensus 73 d~~n~~~~~~~r~~~~~~~iia~~ 96 (129)
T d2fy8a1 73 DSETIHCILGIRKIDESVRIIAEA 96 (129)
T ss_dssp HHHHHHHHHHHHHHCSSSCEEEEC
T ss_pred hhhhHHHHHHHHHHCCCceEEEEE
Confidence 2 334455667788888777654
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=87.32 E-value=1.5 Score=36.23 Aligned_cols=102 Identities=14% Similarity=0.024 Sum_probs=66.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAA-ARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~-~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
++++|=-|++.| .+..+++.+ |++|+.+|.+++.++.+.+.+. ..+ .++.++.+|+.+.. + .-
T Consensus 5 gK~~lITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 81 (251)
T d1vl8a_ 5 GRVALVTGGSRG-LGFGIAQGLAEAGCSVVVASRNLEEASEAAQKLTEKYG--VETMAFRCDVSNYEEVKKLLEAVKEKF 81 (251)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHC--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHhC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 778888886654 455555444 8999999999988776665543 334 46888999997731 0 12
Q ss_pred CCccEEEeccccCCCCC--------HH-----------HHHHHHHHhcCC--CcEEEEEe
Q 016921 225 GQFDLVWSMESGEHMPD--------KS-----------KFVSELARVTAP--AGTIIIVT 263 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--------~~-----------~~l~~~~r~Lkp--gG~l~~~~ 263 (380)
+.+|+++.+..+.+... ++ .+.+.+...|+. +|.++...
T Consensus 82 g~iDiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~~~~~~~~~~~~~m~~~~~G~Ii~i~ 141 (251)
T d1vl8a_ 82 GKLDTVVNAAGINRRHPAEEFPLDEFRQVIEVNLFGTYYVCREAFSLLRESDNPSIINIG 141 (251)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCSSCEEEEEC
T ss_pred CCCCEEEECCCCCCCCChhhCCHHHHHHHHHhhhhhhhhhhhhhhhcccccccccccccc
Confidence 57999987765544321 11 255666777743 56766654
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.27 E-value=0.26 Score=42.76 Aligned_cols=70 Identities=16% Similarity=0.213 Sum_probs=50.8
Q ss_pred CCEEEEECCCcChHHHHHHHHcCC--E-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC---CCCCCccEEEe
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKFGA--K-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP---FPDGQFDLVWS 232 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~~~--~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~---~~~~~fD~V~~ 232 (380)
+.+|+|+-||.|.+...+.+. |. + +.++|+++...+..+.+. +...++..|+.++. ++...+|+++.
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~------~~~~~~~~di~~~~~~~~~~~~~Dll~g 74 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF------PHTQLLAKTIEGITLEEFDRLSFDMILM 74 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC------TTSCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred CCEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC------CCCCcccCchhhCCHhHcCCCCccEEEe
Confidence 678999999999998887665 43 3 678999998888776654 24566778887763 22236899886
Q ss_pred ccc
Q 016921 233 MES 235 (380)
Q Consensus 233 ~~~ 235 (380)
..-
T Consensus 75 gpP 77 (343)
T d1g55a_ 75 SPP 77 (343)
T ss_dssp CCC
T ss_pred ecc
Confidence 443
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=87.15 E-value=1.3 Score=36.79 Aligned_cols=77 Identities=21% Similarity=0.178 Sum_probs=55.0
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++++|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+...+...++.++.+|+.+.. -.-+
T Consensus 4 gK~alITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSG-LGRATAVRLAAEGAKLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 677888887655 444444433 89999999999998888777766555557889999998742 0125
Q ss_pred CccEEEecccc
Q 016921 226 QFDLVWSMESG 236 (380)
Q Consensus 226 ~fD~V~~~~~l 236 (380)
..|+++.+..+
T Consensus 83 ~iDiLVnnAG~ 93 (258)
T d1iy8a_ 83 RIDGFFNNAGI 93 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 79998876554
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=87.10 E-value=0.36 Score=40.46 Aligned_cols=53 Identities=25% Similarity=0.407 Sum_probs=36.6
Q ss_pred EEEEcCCCCC--CCCCCCccEEEeccc----cC-------CCCCHHHHHHHHHHhcCCCcEEEEEe
Q 016921 211 SFQVGDALQQ--PFPDGQFDLVWSMES----GE-------HMPDKSKFVSELARVTAPAGTIIIVT 263 (380)
Q Consensus 211 ~~~~~d~~~~--~~~~~~fD~V~~~~~----l~-------~~~~~~~~l~~~~r~LkpgG~l~~~~ 263 (380)
.|+++|..+. .++++++|+|+..=- .. ++......+.++.|+|||||.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 4677776653 467889999987421 11 11123677889999999999999865
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=85.92 E-value=1.1 Score=39.97 Aligned_cols=50 Identities=18% Similarity=0.084 Sum_probs=42.0
Q ss_pred CCCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCC
Q 016921 157 KRPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGL 206 (380)
Q Consensus 157 ~~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~ 206 (380)
.++..++|||+-.|..+..++... ..+|+++++++...+..+++++....
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~ 263 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD 263 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence 457899999999999998877654 36899999999999999998876543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.41 E-value=1.5 Score=36.28 Aligned_cols=76 Identities=16% Similarity=0.152 Sum_probs=54.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
+++++|=-|.+. .++..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. -.-
T Consensus 4 ~gK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (260)
T d1zema1 4 NGKVCLVTGAGG-NIGLATALRLAEEGTAIALLDMNREALEKAEASVREKG--VEARSYVCDVTSEEAVIGTVDSVVRDF 80 (260)
T ss_dssp TTCEEEEETTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTT--SCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 377888777654 4455555544 8999999999999998888887655 46889999987631 012
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+++.+...
T Consensus 81 g~iDilVnnaG~ 92 (260)
T d1zema1 81 GKIDFLFNNAGY 92 (260)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCeehhhhcc
Confidence 578988866443
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.34 E-value=3 Score=34.02 Aligned_cols=75 Identities=15% Similarity=0.113 Sum_probs=51.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCcc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFD 228 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD 228 (380)
.++++|=.|++.| .+..+++.+ |++|+.+|.+++.++...+.. .++..++.|+.+.. -.-++.|
T Consensus 6 ~GK~~lITGas~G-IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~d~~~v~~~~~~~g~iD 78 (244)
T d1pr9a_ 6 AGRRVLVTGAGKG-IGRGTVQALHATGARVVAVSRTQADLDSLVREC------PGIEPVCVDLGDWEATERALGSVGPVD 78 (244)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence 3788998886654 455555444 899999999998776654432 35788889987631 1226799
Q ss_pred EEEeccccCCC
Q 016921 229 LVWSMESGEHM 239 (380)
Q Consensus 229 ~V~~~~~l~~~ 239 (380)
+++.+..+.+.
T Consensus 79 ilVnnAg~~~~ 89 (244)
T d1pr9a_ 79 LLVNNAAVALL 89 (244)
T ss_dssp EEEECCCCCCC
T ss_pred EEEeccccccc
Confidence 98876655443
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=84.77 E-value=2 Score=35.48 Aligned_cols=78 Identities=14% Similarity=0.165 Sum_probs=56.5
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FP 223 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~ 223 (380)
++++||=.|+..| ++..+++++ |++|+.++.++..++.+.+.+...+ .++.++.+|+.+.. ..
T Consensus 5 ~gK~alITGas~G-IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~~~~~~--~~~~~~~~D~s~~~~~~~~~~~~~~~~ 81 (258)
T d1ae1a_ 5 KGTTALVTGGSKG-IGYAIVEELAGLGARVYTCSRNEKELDECLEIWREKG--LNVEGSVCDLLSRTERDKLMQTVAHVF 81 (258)
T ss_dssp TTCEEEEESCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred CCCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeecCCHHHHHHHHHHHHHHh
Confidence 3788998887654 444454443 8999999999999888888887766 46888899997741 11
Q ss_pred CCCccEEEeccccCC
Q 016921 224 DGQFDLVWSMESGEH 238 (380)
Q Consensus 224 ~~~fD~V~~~~~l~~ 238 (380)
.+..|+++.+..+.+
T Consensus 82 ~g~idilinnag~~~ 96 (258)
T d1ae1a_ 82 DGKLNILVNNAGVVI 96 (258)
T ss_dssp TSCCCEEEECCCCCC
T ss_pred CCCcEEEeccccccc
Confidence 357888887655544
|
| >d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Small proteins fold: beta-beta-alpha zinc fingers superfamily: beta-beta-alpha zinc fingers family: Classic zinc finger, C2H2 domain: Tramtrack protein (two zinc-finger peptide) species: Drosophila melanogaster [TaxId: 7227]
Probab=84.02 E-value=0.11 Score=25.51 Aligned_cols=10 Identities=40% Similarity=0.886 Sum_probs=8.2
Q ss_pred CCCCc-cceee
Q 016921 6 RCDSC-TRFTV 15 (380)
Q Consensus 6 ~~~~~-~~~~~ 15 (380)
|||.| .+||.
T Consensus 3 pcp~cfkeftr 13 (26)
T d2drpa2 3 PCPFCFKEFTR 13 (26)
T ss_dssp ECTTTCCEESC
T ss_pred CCchhhHHhcc
Confidence 79999 88874
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=83.76 E-value=2.1 Score=35.41 Aligned_cols=78 Identities=13% Similarity=0.078 Sum_probs=56.2
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------~~~ 224 (380)
++++|=-|++. .++..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. .-.
T Consensus 8 GK~alITGas~-GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d2ae2a_ 8 GCTALVTGGSR-GIGYGIVEELASLGASVYTCSRNQKELNDCLTQWRSKG--FKVEASVCDLSSRSERQELMNTVANHFH 84 (259)
T ss_dssp TCEEEEESCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CEEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CCceEEEeeCCCHHHHHHHHHHHHHHhC
Confidence 77888777665 4555555544 8999999999999988888877665 46888999987631 012
Q ss_pred CCccEEEeccccCCC
Q 016921 225 GQFDLVWSMESGEHM 239 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~ 239 (380)
...|+++.+..+.+.
T Consensus 85 ~~idilvnnAG~~~~ 99 (259)
T d2ae2a_ 85 GKLNILVNNAGIVIY 99 (259)
T ss_dssp TCCCEEEECCCCCCC
T ss_pred CCceEEEECCceecc
Confidence 478999877655443
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=83.55 E-value=4 Score=33.69 Aligned_cols=103 Identities=17% Similarity=0.102 Sum_probs=68.1
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCC-HHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLS-PVQAQRANALAAARGLADKVSFQVGDALQQP----------FPD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~ 224 (380)
++++|=.|++. .++..+++.+ |++|+..|.+ ++.++...+.+.+.+ .++.++.+|+.+.. -..
T Consensus 18 gK~~lITGas~-GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~~~~~g--~~~~~~~~D~~~~~~v~~~~~~~~~~~ 94 (272)
T d1g0oa_ 18 GKVALVTGAGR-GIGREMAMELGRRGCKVIVNYANSTESAEEVVAAIKKNG--SDAACVKANVGVVEDIVRMFEEAVKIF 94 (272)
T ss_dssp TCEEEETTTTS-HHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHHHTT--CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHHHHhhC--CceeeEeCCCCCHHHHHHHHHHHHHHh
Confidence 67777777655 4455555544 8999999986 556666666666655 46889999988731 012
Q ss_pred CCccEEEeccccCCCCC--------H-----------HHHHHHHHHhcCCCcEEEEEec
Q 016921 225 GQFDLVWSMESGEHMPD--------K-----------SKFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 225 ~~fD~V~~~~~l~~~~~--------~-----------~~~l~~~~r~LkpgG~l~~~~~ 264 (380)
+..|+++.+........ + -...+.+.+.|+.+|.+++...
T Consensus 95 g~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~s 153 (272)
T d1g0oa_ 95 GKLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMGS 153 (272)
T ss_dssp SCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEECC
T ss_pred CCCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeeccccccccccccccccccc
Confidence 57898887665544321 1 1256778888888888777643
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.45 E-value=1.9 Score=36.00 Aligned_cols=78 Identities=21% Similarity=0.229 Sum_probs=55.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC----------CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP----------FP 223 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~----------~~ 223 (380)
+++++|=.|++. .++..+++.+ |++|+.+|.+++.++.+.+.+.+.+.. .++.++.+|+.+.. -.
T Consensus 4 ~gK~alVTGas~-GIG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~ 82 (272)
T d1xkqa_ 4 SNKTVIITGSSN-GIGRTTAILFAQEGANVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ 82 (272)
T ss_dssp TTCEEEETTCSS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCc-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHH
Confidence 367777777554 4555555544 899999999999999888888766542 46889999998731 01
Q ss_pred CCCccEEEecccc
Q 016921 224 DGQFDLVWSMESG 236 (380)
Q Consensus 224 ~~~fD~V~~~~~l 236 (380)
-+..|+++.+...
T Consensus 83 ~g~iDilvnnAG~ 95 (272)
T d1xkqa_ 83 FGKIDVLVNNAGA 95 (272)
T ss_dssp HSCCCEEEECCCC
T ss_pred hCCceEEEeCCcc
Confidence 2578998876444
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.19 E-value=1.9 Score=36.04 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=55.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCC-CCeEEEEcCCCCCC-----C-----CC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLA-DKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~-~~v~~~~~d~~~~~-----~-----~~ 224 (380)
++++|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+.+.+.. .++.++.+|+.+.. + .-
T Consensus 4 gK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNG-IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 677777776655 555555544 899999999999998888888776543 46889999988742 0 12
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+++.+...
T Consensus 83 G~iDilVnnAG~ 94 (274)
T d1xhla_ 83 GKIDILVNNAGA 94 (274)
T ss_dssp SCCCEEEECCCC
T ss_pred CCceEEEeeccc
Confidence 578999876543
|
| >d1orra_ c.2.1.2 (A:) CDP-tyvelose-2-epimerase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: CDP-tyvelose-2-epimerase species: Salmonella typhi [TaxId: 90370]
Probab=82.10 E-value=0.63 Score=39.79 Aligned_cols=76 Identities=18% Similarity=0.127 Sum_probs=46.9
Q ss_pred CEEEEECCCcChHHHHHHHHc---CCEEEEEe-CCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----CCCCCccEE
Q 016921 160 KNVVDVGCGIGGSSRYLAKKF---GAKCQGIT-LSPVQAQRANALAAARGLADKVSFQVGDALQQP-----FPDGQFDLV 230 (380)
Q Consensus 160 ~~vLDiGcGtG~~~~~l~~~~---~~~v~giD-~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~~~~~fD~V 230 (380)
.+||=.| |+|..+..+.+.+ |.+|+++| ++............. ..+++++.+|+.+.. +...++|.|
T Consensus 1 ~KILVTG-atGfIGs~lv~~Ll~~g~~V~~id~~~~~~~~~~~~~~~~---~~~~~~i~~Di~~~~~l~~~~~~~~~d~V 76 (338)
T d1orra_ 1 AKLLITG-GCGFLGSNLASFALSQGIDLIVFDNLSRKGATDNLHWLSS---LGNFEFVHGDIRNKNDVTRLITKYMPDSC 76 (338)
T ss_dssp CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCCSTTHHHHHHHHHT---TCCCEEEECCTTCHHHHHHHHHHHCCSEE
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEECCCcccchhHHHHhhc---cCCcEEEEcccCCHHHHHHHHHhcCCceE
Confidence 3677444 7898888777665 78999998 332221111111111 257999999998742 223467999
Q ss_pred EeccccCCC
Q 016921 231 WSMESGEHM 239 (380)
Q Consensus 231 ~~~~~l~~~ 239 (380)
+...+..+.
T Consensus 77 ih~aa~~~~ 85 (338)
T d1orra_ 77 FHLAGQVAM 85 (338)
T ss_dssp EECCCCCCH
T ss_pred Eeecccccc
Confidence 876655443
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=81.56 E-value=6.1 Score=31.93 Aligned_cols=100 Identities=18% Similarity=0.150 Sum_probs=65.8
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDG 225 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~ 225 (380)
++++|=.|++. ..+..+++.+ |++|+.++.+...++...+ + +..++.++++|+.+.. -.-+
T Consensus 5 gK~alItGas~-GIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~---~--~~~~~~~~~~Dls~~~~i~~~~~~i~~~~g 78 (241)
T d2a4ka1 5 GKTILVTGAAS-GIGRAALDLFAREGASLVAVDREERLLAEAVA---A--LEAEAIAVVADVSDPKAVEAVFAEALEEFG 78 (241)
T ss_dssp TCEEEEESTTS-HHHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---T--CCSSEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCC-HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH---H--cCCceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 77788888664 4555555554 8999999999987654433 2 2357888999987642 0125
Q ss_pred CccEEEeccccCCCCCH-----H--------------HHHHHHHHhcCCCcEEEEEec
Q 016921 226 QFDLVWSMESGEHMPDK-----S--------------KFVSELARVTAPAGTIIIVTW 264 (380)
Q Consensus 226 ~fD~V~~~~~l~~~~~~-----~--------------~~l~~~~r~LkpgG~l~~~~~ 264 (380)
..|+++.+....+.... + .+.+.+...++.++.+++...
T Consensus 79 ~iDiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 79 RLHGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp CCCEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred CccEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 78988876655444211 1 245667778888888776543
|
| >d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sulfolipid biosynthesis protein SQD1 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=81.31 E-value=0.91 Score=40.01 Aligned_cols=75 Identities=19% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHH-H----------------HHHHHHHHcCCCCCeEEEEcCCC
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQA-Q----------------RANALAAARGLADKVSFQVGDAL 218 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~-~----------------~a~~~~~~~~~~~~v~~~~~d~~ 218 (380)
|++||=.| |+|..+..+++.+ |.+|+++|.-.... . .........+ .+++|+.+|+.
T Consensus 1 g~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~Dl~ 77 (393)
T d1i24a_ 1 GSRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKALTG--KSIELYVGDIC 77 (393)
T ss_dssp -CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHHHHC--CCCEEEESCTT
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHhhcC--CCcEEEEccCC
Confidence 46788777 5899888887766 88999999422111 1 1111111112 47999999998
Q ss_pred CCC-----CCCCCccEEEecccc
Q 016921 219 QQP-----FPDGQFDLVWSMESG 236 (380)
Q Consensus 219 ~~~-----~~~~~fD~V~~~~~l 236 (380)
+.. +....+|.|+-..+.
T Consensus 78 d~~~l~~~~~~~~~d~ViHlAa~ 100 (393)
T d1i24a_ 78 DFEFLAESFKSFEPDSVVHFGEQ 100 (393)
T ss_dssp SHHHHHHHHHHHCCSEEEECCSC
T ss_pred CHHHHHHHHHhhcchheeccccc
Confidence 742 223467988865543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=81.24 E-value=2.9 Score=34.35 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=52.6
Q ss_pred EEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC----------CCCCCcc
Q 016921 162 VVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP----------FPDGQFD 228 (380)
Q Consensus 162 vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----------~~~~~fD 228 (380)
+|=-|++ +.++..+++.+ |++|+.+|.+++.++...+.+...+ .++.++.+|+.+.. -.-+..|
T Consensus 4 alITGas-~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (255)
T d1gega_ 4 ALVTGAG-QGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAG--GHAVAVKVDVSDRDQVFAAVEQARKTLGGFD 80 (255)
T ss_dssp EEEETTT-SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred EEEcCCc-cHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 3555644 55566666554 8999999999999988888777665 47888999998742 0126799
Q ss_pred EEEeccccCC
Q 016921 229 LVWSMESGEH 238 (380)
Q Consensus 229 ~V~~~~~l~~ 238 (380)
+++.+-.+..
T Consensus 81 ilVnnAG~~~ 90 (255)
T d1gega_ 81 VIVNNAGVAP 90 (255)
T ss_dssp EEEECCCCCC
T ss_pred EEEecccccc
Confidence 9887655433
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=81.21 E-value=1.2 Score=38.14 Aligned_cols=68 Identities=16% Similarity=0.067 Sum_probs=49.4
Q ss_pred CCCEEEEECCCcChHHHHHHHHcCCE-EEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCCCC-CCCccEEEecc
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKFGAK-CQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQPFP-DGQFDLVWSME 234 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~~~~-v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~~fD~V~~~~ 234 (380)
.+.+|||+=||.|.+...+.+. |.+ +.++|+++...+.-+.+... . .++|+.++... -..+|+++...
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~a-G~~~v~a~e~d~~a~~~~~~N~~~------~--~~~Di~~~~~~~~~~~Dll~ggp 79 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESC-GAECVYSNEWDKYAQEVYEMNFGE------K--PEGDITQVNEKTIPDHDILCAGF 79 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHT-TCEEEEEECCCHHHHHHHHHHHSC------C--CBSCGGGSCGGGSCCCSEEEEEC
T ss_pred CCCeEEEECccccHHHHHHHHC-CCeEEEEEeCCHHHHHHHHHHCCC------C--CcCchhcCchhhcceeeeeeccc
Confidence 4789999999999999988765 655 45699999999888877621 1 24677665321 23689988643
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=81.21 E-value=2 Score=35.71 Aligned_cols=75 Identities=21% Similarity=0.246 Sum_probs=52.6
Q ss_pred CCCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC-----C-----CC
Q 016921 158 RPKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP-----F-----PD 224 (380)
Q Consensus 158 ~~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----~-----~~ 224 (380)
+++.+|=.|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+.. ..++.++.+|+.+.. + .-
T Consensus 5 ~gKvalITGas~G-IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~---~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 80 (268)
T d2bgka1 5 QDKVAIITGGAGG-IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS---PDVISFVHCDVTKDEDVRNLVDTTIAKH 80 (268)
T ss_dssp TTCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC---TTTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC---CCceEEEEccCCCHHHHHHHHHHHHHHc
Confidence 3788888886655 555555544 89999999999888776665532 346888999987741 0 12
Q ss_pred CCccEEEecccc
Q 016921 225 GQFDLVWSMESG 236 (380)
Q Consensus 225 ~~fD~V~~~~~l 236 (380)
+..|+++.+..+
T Consensus 81 g~iD~lVnnAG~ 92 (268)
T d2bgka1 81 GKLDIMFGNVGV 92 (268)
T ss_dssp SCCCEEEECCCC
T ss_pred CCcceecccccc
Confidence 578998876554
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.87 E-value=2.8 Score=34.60 Aligned_cols=77 Identities=19% Similarity=0.233 Sum_probs=54.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC--------C-C--C
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP--------F-P--D 224 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--------~-~--~ 224 (380)
++++|=-|++.| ++..+++.+ |++|+.+|.+++.++.+.+.+...+ .++.++.+|+.+.. . . .
T Consensus 8 gK~alVTGas~G-IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~~ 84 (259)
T d1xq1a_ 8 AKTVLVTGGTKG-IGHAIVEEFAGFGAVIHTCARNEYELNECLSKWQKKG--FQVTGSVCDASLRPEREKLMQTVSSMFG 84 (259)
T ss_dssp TCEEEETTTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTT--CCEEEEECCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCCH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CceEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 677887776654 455555444 8999999999999888888776655 46899999987631 0 1 2
Q ss_pred CCccEEEeccccCC
Q 016921 225 GQFDLVWSMESGEH 238 (380)
Q Consensus 225 ~~fD~V~~~~~l~~ 238 (380)
+..|+++.+..+.+
T Consensus 85 g~idilvnnAG~~~ 98 (259)
T d1xq1a_ 85 GKLDILINNLGAIR 98 (259)
T ss_dssp TCCSEEEEECCC--
T ss_pred CCcccccccccccC
Confidence 57899988765544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.47 E-value=6.1 Score=31.98 Aligned_cols=73 Identities=18% Similarity=0.050 Sum_probs=49.7
Q ss_pred CCEEEEECCCcChHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCeEEEEcCCCCCC------CCCCCccE
Q 016921 159 PKNVVDVGCGIGGSSRYLAKKF---GAKCQGITLSPVQAQRANALAAARGLADKVSFQVGDALQQP------FPDGQFDL 229 (380)
Q Consensus 159 ~~~vLDiGcGtG~~~~~l~~~~---~~~v~giD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~------~~~~~fD~ 229 (380)
++++|=.|++.| ++..+++.+ |++|+.+|.+++.++...+.. .++..+..|+.+.. -.-++.|+
T Consensus 5 GK~alITGas~G-IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~------~~~~~~~~Dv~~~~~v~~~~~~~g~iDi 77 (242)
T d1cyda_ 5 GLRALVTGAGKG-IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC------PGIEPVCVDLGDWDATEKALGGIGPVDL 77 (242)
T ss_dssp TCEEEEESTTSH-HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS------TTCEEEECCTTCHHHHHHHHTTCCCCSE
T ss_pred CCEEEEeCCCcH-HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc------CCCeEEEEeCCCHHHHHHHHHHcCCCeE
Confidence 788887786654 555555544 899999999987766544322 35788889987641 11267999
Q ss_pred EEeccccCC
Q 016921 230 VWSMESGEH 238 (380)
Q Consensus 230 V~~~~~l~~ 238 (380)
++.+..+.+
T Consensus 78 lVnnAg~~~ 86 (242)
T d1cyda_ 78 LVNNAALVI 86 (242)
T ss_dssp EEECCCCCC
T ss_pred EEECCcccc
Confidence 887655543
|