Citrus Sinensis ID: 016947

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
Protein Sequence
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccHHHHccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHccccccccccHHHHccccccccHHHHHccccccccHHHHccccccccHHHHHccccccEEEccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHEEEEEHccHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAGIRFSILKSLcsssiypsfkprllhtsnsYFKLARYAEQKHVKLSCAVvnnnydnsrLHSALNSINNqlkvhgfapigktqchkanavssylptsknfcSRRLATfasispflghrsyssffgsktdksteidvpaassgsetdvsnhgivgsdsfdKIKDAWKSVVDGVSytgqkakdelSPQIEQLLdahpylrdvivpVSCYLTGTVLAWVVMPRVLRRFHKYaiqgpvsllsgglsieqvpyeksfwgaledPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Flexible Loop (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAassgsetdvsnhgivGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Low Complexity Region (SEG)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQclllatcsllflfH
Disordered region (IsUnstruct)
***IRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFF********************************SFDKIKDAWKSVVDGVSYTGQ*******PQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLF*
Disordered Region (DISOPRED)
*********K*************RLLHTSNSYFKLARYAEQKHVKLSCAV****************INNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASIS****************************************VGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAM*******L*REKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Disordered Region (DISEMBL)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKS***************VSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Disordered Region (DISPRO)
**GIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQC****AVSSYLPTSKNFCSRRLATFASISPFL**************************************GSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	380	2.2.26 [Sep-21-2011]
Q8VZL4	497	Mechanosensitive ion chan	yes	no	0.728	0.557	0.555	2e-82

>sp|Q8VZL4|MSL1_ARATH Mechanosensitive ion channel protein 1, mitochondrial OS=Arabidopsis thaliana GN=MSL1 PE=2 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 159/286 (55%), Positives = 198/286 (69%), Gaps = 9/286 (3%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLL 376
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GG     A   +L
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDIL 329

Mechanosensitive channel that opens in response to stretch forces in the membrane lipid bilayer.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
225454344	599	PREDICTED: uncharacterized protein LOC10	0.965	0.612	0.577	1e-116
224064055	534	predicted protein [Populus trichocarpa]	0.944	0.672	0.552	1e-104
449527268	521	PREDICTED: mechanosensitive ion channel	0.913	0.666	0.496	3e-95
449432136	521	PREDICTED: mechanosensitive ion channel	0.913	0.666	0.498	5e-95
356520379	539	PREDICTED: uncharacterized MscS family p	0.913	0.643	0.506	2e-94
356560335	536	PREDICTED: uncharacterized protein LOC10	0.952	0.675	0.503	1e-91
224127740	387	predicted protein [Populus trichocarpa]	0.581	0.571	0.713	7e-91
357504365	548	Mechanosensitive ion channel domain-cont	0.910	0.631	0.485	2e-85
297810151	507	mechanosensitive ion channel domain-cont	0.884	0.662	0.480	2e-83
22328173	497	Mechanosensitive ion channel protein [Ar	0.728	0.557	0.555	1e-80

>gi|225454344|ref|XP_002275920.1| PREDICTED: uncharacterized protein LOC100261915 [Vitis vinifera]

 Score =  425 bits (1092), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 216/374 (57%), Positives = 262/374 (70%), Gaps = 7/374 (1%)

Query: 6   FSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALN 65
           F ILKSLC     P  K     + +S    A+YA Q  +K S A  N +        A N
Sbjct: 65  FPILKSLCD----PISKTHSFRSYDSCLDFAKYAYQVELKSSYASSNRSNHTKESPFAAN 120

Query: 66  SINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSYSSFFG 125
            +N + ++   A    TQC+KA  V+++ PT  N          S+ P   +RSYSS+FG
Sbjct: 121 FVNARFRIPSIASPVDTQCYKAKQVNAFSPTLLNSRFGSSIPLISVIPISKYRSYSSYFG 180

Query: 126 SKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK---DE 182
           SK DK  E +V AA+  SE DVSN G++GSD  DK+KD W+S VD  +Y GQKAK   DE
Sbjct: 181 SKGDKPQEKEVQAATGMSEPDVSNSGVMGSDWLDKVKDVWQSTVDAAAYRGQKAKETSDE 240

Query: 183 LSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLS 242
           L+P ++QLLD+ PYL+ V++PV C LT T+LAW VMPR+LRRFHKYA QG   LL G L 
Sbjct: 241 LAPYVDQLLDSLPYLKTVVIPVGCTLTATILAWAVMPRLLRRFHKYATQGSAVLLLGSLP 300

Query: 243 IEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILSFVWFL 302
            EQVPYEKSFW ALEDPVRYLITF++F QIG M+APTTIASQY+  AWRGA+ILSFVWFL
Sbjct: 301 EEQVPYEKSFWSALEDPVRYLITFISFTQIGTMIAPTTIASQYIGPAWRGALILSFVWFL 360

Query: 303 HRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG 362
           HRWKTNVF RA+A+QS+ GLDREK+LALD++SSVGLFV+GLMALAEACGVAVQSILTVGG
Sbjct: 361 HRWKTNVFARALAAQSVVGLDREKLLALDKLSSVGLFVLGLMALAEACGVAVQSILTVGG 420

Query: 363 IGGQCLLLATCSLL 376
           IGG     A+  +L
Sbjct: 421 IGGVATAFASRDIL 434

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224064055|ref|XP_002301369.1| predicted protein [Populus trichocarpa] gi|222843095|gb|EEE80642.1| predicted protein [Populus trichocarpa]

 Score =  385 bits (988), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 211/382 (55%), Positives = 259/382 (67%), Gaps = 23/382 (6%)

Query: 1   MAGIRFSILK-SLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNY--DN 57
           MAG+R S+LK SLC S    S   + L   N +    R A         A++N  Y  D 
Sbjct: 1   MAGLRLSMLKNSLCIS--INSLSWQSLQFCNVHGSTLRSA--------YAIINRGYYKDE 50

Query: 58  SRLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGH 117
           SRL   L +     KV        +Q ++   V  +  TS N   R    F S+ P L +
Sbjct: 51  SRLAGNLTN----FKVVRSDTCVNSQSYRIEPVRGFSSTSSNVLFRSAVPFISMRPELSY 106

Query: 118 RSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQ 177
           RS+S   G+K DK    +VPA+S G++ DVSN G + SD  +K+K+AW+S VD V+Y+GQ
Sbjct: 107 RSFSWSSGAKVDKPVGNEVPASSGGNDVDVSNSGAIVSDWINKVKEAWQSTVDAVTYSGQ 166

Query: 178 KA---KDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPV 234
           KA    DEL+P  +QLLD+H YL++V+VPV   LTGTV+AWVVMPR+LRRFHKY++Q P 
Sbjct: 167 KAIETSDELTPYAQQLLDSHLYLKNVVVPVGSTLTGTVVAWVVMPRLLRRFHKYSLQTPA 226

Query: 235 SLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAV 294
           +LLSGG+S EQ+PYEKS  GALEDP+RYLITFMAF QI +MVAPTTIASQY+AQ WRGA 
Sbjct: 227 ALLSGGISGEQIPYEKSILGALEDPLRYLITFMAFSQIAVMVAPTTIASQYIAQVWRGAA 286

Query: 295 ILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAV 354
           ILSFVWFLHRWKTNVF R +AS   A +D+EK+L LDR+SSVGLFVIGLMALAEACGVAV
Sbjct: 287 ILSFVWFLHRWKTNVFNRVIAS---ATVDQEKLLTLDRVSSVGLFVIGLMALAEACGVAV 343

Query: 355 QSILTVGGIGGQCLLLATCSLL 376
           QS LTVGGIGG     A   +L
Sbjct: 344 QSFLTVGGIGGVATAFAAKDVL 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527268|ref|XP_004170634.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  354 bits (909), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 189/381 (49%), Positives = 256/381 (67%), Gaps = 34/381 (8%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +           + + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG---------TDRIDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGQCLLLATCSLL 376
           S+LTVGGIGG     A   +L
Sbjct: 332 SMLTVGGIGGVATAFAARDIL 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432136|ref|XP_004133856.1| PREDICTED: mechanosensitive ion channel protein 1, mitochondrial-like [Cucumis sativus]

 Score =  353 bits (907), Expect = 5e-95,   Method: Compositional matrix adjust.
 Identities = 190/381 (49%), Positives = 257/381 (67%), Gaps = 34/381 (8%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA  RF+     CS   + SFKP        Y K++ Y ++  V     V+N  Y     
Sbjct: 1   MACRRFAA----CS---FQSFKP--------YTKISEYFDR--VLRPNVVLNKRYYKDES 43

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTS--KNFCSRRLATFASISPFLGHR 118
           HS   +    L +  +        H+   + ++LP S  K + +  L  F ++S    +R
Sbjct: 44  HSFKRATVRGLHIPSYG------THR---IDTFLPASSMKYWNTIPLTCFGNLS---NYR 91

Query: 119 SYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           +YSS  G K D S +  VPAASSG E D+SN   VG D  +K+KD W+S VD  S+TGQK
Sbjct: 92  NYSSASGRKADISGDTGVPAASSGVEPDISNPPDVGRDLLEKVKDVWQSAVDAASFTGQK 151

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
           AK   DELSP +++LLD+HPYL++VIVPVS  L  T+LAW+VMPR+L+RFHKY+++ PV+
Sbjct: 152 AKEVSDELSPHVDKLLDSHPYLKNVIVPVSMTLGATLLAWLVMPRLLKRFHKYSMRSPVA 211

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           ++SG L  E++PYEKSFWGALEDP+RYL+TF AF QIG++VAPT +A ++++QA RGAVI
Sbjct: 212 IISGSLPSEEIPYEKSFWGALEDPLRYLVTFFAFSQIGVIVAPTAVAPEFVSQACRGAVI 271

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           LS VWF++RWKTNV +RA+A+++ AGLDR+++L LD++SSV LF IGLMALAEA GVAVQ
Sbjct: 272 LSLVWFIYRWKTNVLSRALATKTFAGLDRDRLLTLDKVSSVALFAIGLMALAEASGVAVQ 331

Query: 356 SILTVGGIGGQCLLLATCSLL 376
           S+LTVGGIGG     A   +L
Sbjct: 332 SMLTVGGIGGVATAFAARDIL 352

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520379|ref|XP_003528840.1| PREDICTED: uncharacterized MscS family protein aq_812-like [Glycine max]

 Score =  352 bits (902), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 182/359 (50%), Positives = 237/359 (66%), Gaps = 12/359 (3%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+   + +  +         +L    +++ Y    L
Sbjct: 1   MAAVRSSSVRRL-GSTIQGSFNMELVQHCHYHHSMC----MNLARLPSDSLSHPYYKREL 55

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
             A N  +N         +G +      A  S  PT   +C R    FAS+S  L HR Y
Sbjct: 56  QFAKNRFSNLAS----ESLGSSHHFGTRASVSVKPTFSGYCFRSALPFASMSHVLNHRMY 111

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           SS  G K  +    +V A S  ++ + +   +VG D  ++IKDAWKSV +  SY G K K
Sbjct: 112 SSSVGDKGSRDGGTEVSAGSGATDINTTGDSVVGGDWAERIKDAWKSVAEAASYAGGKVK 171

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              D+L+P  +QLLD+HPYL  V++PV+  LT T+LAW ++PR+LR+FHKYA QGPVSLL
Sbjct: 172 ETSDDLTPFAQQLLDSHPYLDKVVIPVAGTLTATILAWFLLPRILRKFHKYATQGPVSLL 231

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
              +S+E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI+S
Sbjct: 232 PASVSVEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPLWRGAVIVS 291

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQS 356
           FVWFLHRWKTN+F R ++SQS+ GLD+EK+LALD+ISS+GLFVIG+MALAEACGVAVQS
Sbjct: 292 FVWFLHRWKTNIFARTLSSQSLLGLDKEKVLALDKISSIGLFVIGIMALAEACGVAVQS 350

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560335|ref|XP_003548448.1| PREDICTED: uncharacterized protein LOC100814954 [Glycine max]

 Score =  343 bits (879), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 192/381 (50%), Positives = 246/381 (64%), Gaps = 19/381 (4%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MA +R S ++ L  S+I  SF   L+H S     LAR+             ++++++   
Sbjct: 1   MAAVRSSSVRRL-GSTIKGSFSMELVHHSMC-MNLARFP------------SDSFNDPYY 46

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISP-FLGHRS 119
              L    NQ        +G +      A     PT   +C      FAS+S   L  R 
Sbjct: 47  KRELQFSKNQFSNLASESLGSSHHFGTRANVLVKPTFSGYCFWSSLPFASMSNHVLNRRM 106

Query: 120 YSSF-FGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQK 178
           YSS   G K  +    +V A S  S+ +     +VG D  ++IKDAWKSV +  SY G K
Sbjct: 107 YSSSSVGDKGSRDGGTEVSAGSGASDMNTGGDSVVGGDWAERIKDAWKSVAEAASYAGDK 166

Query: 179 AK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVS 235
            K   D+L+P  +QLLD+HPYL  V++PV   LT T++AW ++PR+LR+FHKYA+QGPVS
Sbjct: 167 VKETSDDLTPYAQQLLDSHPYLDKVVIPVGGTLTATIIAWFLLPRILRKFHKYAMQGPVS 226

Query: 236 LLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVI 295
           LL   ++ E VPYEKSFWGA+EDPVRYL+TF+AF QIG+MVAPTTI SQYLA  WRGAVI
Sbjct: 227 LLPASVAGEPVPYEKSFWGAMEDPVRYLVTFIAFSQIGVMVAPTTITSQYLAPVWRGAVI 286

Query: 296 LSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQ 355
           +SFVWFLHRWKTNVF R+++SQS+ GLDREK+ ALD+ISS+GLFVIG+MALAEACGVAVQ
Sbjct: 287 VSFVWFLHRWKTNVFARSLSSQSLLGLDREKVFALDKISSIGLFVIGIMALAEACGVAVQ 346

Query: 356 SILTVGGIGGQCLLLATCSLL 376
           SI+TVGGIGG     AT  +L
Sbjct: 347 SIVTVGGIGGVATAFATKDIL 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127740|ref|XP_002320152.1| predicted protein [Populus trichocarpa] gi|222860925|gb|EEE98467.1| predicted protein [Populus trichocarpa]

 Score =  340 bits (872), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 162/227 (71%), Positives = 192/227 (84%), Gaps = 6/227 (2%)

Query: 153 VGSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLT 209
           +GSD  DK+K+AW+S V  V+Y+ QKAK+   EL+P ++QLLD+HPYL++V+VPV   LT
Sbjct: 2   IGSDWIDKVKEAWQSAVHAVTYSEQKAKEISAELTPYVQQLLDSHPYLKNVVVPVGWTLT 61

Query: 210 GTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAF 269
           GTV+AWVVMPR+LRRFHKY++Q PV+LLSGG S EQ+ YEKS WGALEDP+RY+ITFMAF
Sbjct: 62  GTVVAWVVMPRLLRRFHKYSLQTPVALLSGGTSGEQISYEKSIWGALEDPLRYVITFMAF 121

Query: 270 VQIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLA 329
            QI +MVAPTTIASQY+AQAWRGAVILSFVWFLHRWKTNVF R +AS   A +DREK+L 
Sbjct: 122 SQIAVMVAPTTIASQYIAQAWRGAVILSFVWFLHRWKTNVFNRVIAS---ATVDREKLLT 178

Query: 330 LDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLL 376
           LDR+SSVGLFVIG+MALAEACGVAVQSILTVGGIGG     A   +L
Sbjct: 179 LDRVSSVGLFVIGVMALAEACGVAVQSILTVGGIGGVATAFAAKDVL 225

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504365|ref|XP_003622471.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula] gi|355497486|gb|AES78689.1| Mechanosensitive ion channel domain-containing protein / MS ion channel domain-containing protein [Medicago truncatula]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 181/373 (48%), Positives = 228/373 (61%), Gaps = 27/373 (7%)

Query: 1   MAGIRFSILKSLCSS-SIYPSFKPRLLHTS-NSYFKLARYAEQKHVKLSCAVVNNNYDNS 58
           M+ IRFS +KSL SS   + +F  +  H++ N    LAR +       S     N + + 
Sbjct: 1   MSAIRFSHVKSLHSSIKGFSNFNVQNYHSNPNGSLNLARISSFCTDFSSRGYSKNGFKSP 60

Query: 59  RLHSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPF---- 114
           ++ +             F  +G    H+    ++   T + F S R+       PF    
Sbjct: 61  KMFAETE----------FRNLGSLSGHRGFKFNAAFET-QGFSSPRVCFSVVNIPFASNS 109

Query: 115 -----LGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHG--IVGSDSFDKIKDAWKS 167
                L  R YSS  G +  K+ E +V   +  S+      G   V  D  D++KD WKS
Sbjct: 110 MMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGGDSFVSGDLVDRMKDTWKS 169

Query: 168 VVDGVSYTGQKAK---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRR 224
           VV+ VSY G K K   D ++P  +Q LD+HPYL  V+VPV   LT T++AW ++PR+LR+
Sbjct: 170 VVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVAWFILPRILRK 229

Query: 225 FHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQ 284
           FHKY +Q PVSL    LS E VPYEKSFWGA+EDPVRYL+TF+AF QI  MVAPT IASQ
Sbjct: 230 FHKYGMQSPVSLFQVSLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAAMVAPTAIASQ 289

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           YL   WRGAVILSFVWFLHRWKTNVF R + SQS+ GLDREKMLALD+ISS+GLFVIG+M
Sbjct: 290 YLVPTWRGAVILSFVWFLHRWKTNVFARTLTSQSVLGLDREKMLALDKISSIGLFVIGIM 349

Query: 345 ALAEACGVAVQSI 357
           ALAEACGVAVQSI
Sbjct: 350 ALAEACGVAVQSI 362

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297810151|ref|XP_002872959.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318796|gb|EFH49218.1| mechanosensitive ion channel domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  316 bits (809), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/379 (48%), Positives = 231/379 (60%), Gaps = 43/379 (11%)

Query: 1   MAGIRFSILKSLCSSSIYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRL 60
           MAG+R S+LKSL   SI  S KP     S S F      ++K    S  ++NN++  S  
Sbjct: 1   MAGVRLSLLKSL-QRSINSSSKPHSAAKSLSGF------QKKEPYASFNLLNNSHARSF- 52

Query: 61  HSALNSINNQLKVHGFAPIGKTQCHKANAVSSYLPTSKNFCSRRLATFASISPFLGHRSY 120
                         G  P+   +   +    + L  +K F         SI PFLGH SY
Sbjct: 53  ------------TCGINPLDGPKASPSMVSFTRLHNAKPFN-------YSI-PFLGHSSY 92

Query: 121 SSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDGVSYTGQKAK 180
           +  F SK+D      V     G+  D+        D  +K KD  ++ VD VS T +K K
Sbjct: 93  ARAFSSKSDGI----VSPGGDGNGNDI--------DWVEKAKDVLQTSVDAVSETARKTK 140

Query: 181 ---DELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLL 237
              DE+ P ++Q LD++PYL++VIVP+S  +TGT+ AW+VMPR+LRRFH YA+Q    LL
Sbjct: 141 EASDEMIPHVQQFLDSNPYLKEVIVPISLTMTGTLFAWLVMPRILRRFHTYALQSSAKLL 200

Query: 238 SGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQAWRGAVILS 297
             G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY +   +GAVILS
Sbjct: 201 PVGFSNEDVPYEKSFWGALEDPARYLVTFVAFAQIAAMVAPTTIAAQYFSPTVKGAVILS 260

Query: 298 FVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSI 357
            VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AEACGVAVQSI
Sbjct: 261 LVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAEACGVAVQSI 320

Query: 358 LTVGGIGGQCLLLATCSLL 376
           LTVGG+GG     A   +L
Sbjct: 321 LTVGGVGGVATAFAARDIL 339

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22328173|ref|NP_567165.2| Mechanosensitive ion channel protein [Arabidopsis thaliana] gi|75161661|sp|Q8VZL4.1|MSL1_ARATH RecName: Full=Mechanosensitive ion channel protein 1, mitochondrial; AltName: Full=Mechanosensitive channel of small conductance-like 1; AltName: Full=MscS-Like protein 1; Flags: Precursor gi|17381142|gb|AAL36383.1| unknown protein [Arabidopsis thaliana] gi|20465557|gb|AAM20261.1| unknown protein [Arabidopsis thaliana] gi|51971068|dbj|BAD44226.1| unknown protein [Arabidopsis thaliana] gi|51971355|dbj|BAD44342.1| unknown protein [Arabidopsis thaliana] gi|332656450|gb|AEE81850.1| Mechanosensitive ion channel protein [Arabidopsis thaliana]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 159/286 (55%), Positives = 198/286 (69%), Gaps = 9/286 (3%)

Query: 95  PTSKNFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIV 153
           P+  +F S  RL   A    +LGH SY+  F SK+D     D  +  +   T   +    
Sbjct: 49  PSMISFSSNIRLHNDAKPFNYLGHSSYARAFSSKSD-----DFGSIVASGVTGSGDGNGN 103

Query: 154 GSDSFDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTG 210
           G+D  +K KD  ++ VD V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TG
Sbjct: 104 GNDWVEKAKDVLQTSVDAVTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTG 163

Query: 211 TVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFV 270
           T+ AWVVMPR+LRRFH YA+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF 
Sbjct: 164 TLFAWVVMPRILRRFHTYAMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFA 223

Query: 271 QIGMMVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLAL 330
           QI  MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L L
Sbjct: 224 QIAAMVAPTTIAAQYFSPTVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTL 283

Query: 331 DRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLL 376
           D++SSVGLF IGLMA AEACGVAVQSILTVGG+GG     A   +L
Sbjct: 284 DKVSSVGLFAIGLMASAEACGVAVQSILTVGGVGGVATAFAARDIL 329

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	380
TAIR|locus:2126061	497	AT4G00290 [Arabidopsis thalian	0.786	0.601	0.539	2.1e-77
TAIR|locus:505006411	263	AT4G00234 "AT4G00234" [Arabido	0.673	0.973	0.565	1.1e-71

TAIR|locus:2126061 AT4G00290 [Arabidopsis thaliana (taxid:3702)]

 Score = 779 (279.3 bits), Expect = 2.1e-77, P = 2.1e-77
 Identities = 171/317 (53%), Positives = 211/317 (66%)

Query:    62 SALNSINNQLKVHGFAPI--GKTQCH-KANAVSSYL------PTSKNFCSR-RLATFASI 111
             S L SI   +K H  A    G    H +A    + L      P+  +F S  RL   A  
Sbjct:     7 SLLKSIQRSIKPHATAKSCSGLLNSHARAFTCGNLLDGPKASPSMISFSSNIRLHNDAKP 66

Query:   112 SPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDSFDKIKDAWKSVVDG 171
               +LGH SY+  F SK+D    I V +  +GS     N    G+D  +K KD  ++ VD 
Sbjct:    67 FNYLGHSSYARAFSSKSDDFGSI-VASGVTGSGDGNGN----GNDWVEKAKDVLQTSVDA 121

Query:   172 VSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLAWVVMPRVLRRFHKY 228
             V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ AWVVMPR+LRRFH Y
Sbjct:   122 VTETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTMTGTLFAWVVMPRILRRFHTY 181

Query:   229 AIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPTTIASQYLAQ 288
             A+Q    LL  G S E VPYEKSFWGALEDP RYL+TF+AF QI  MVAPTTIA+QY + 
Sbjct:   182 AMQSSAKLLPVGFSNEDVPYEKSFWGALEDPARYLVTFIAFAQIAAMVAPTTIAAQYFSP 241

Query:   289 AWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAE 348
               +GAVILS VWFL+RWKTNV TR ++++S  GLDREK+L LD++SSVGLF IGLMA AE
Sbjct:   242 TVKGAVILSLVWFLYRWKTNVITRMLSAKSFGGLDREKVLTLDKVSSVGLFAIGLMASAE 301

Query:   349 ACGVAVQSILTVGGIGG 365
             ACGVAVQSILTVGG+GG
Sbjct:   302 ACGVAVQSILTVGGVGG 318

GO:0005886 "plasma membrane" evidence=ISM

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:505006411 AT4G00234 "AT4G00234" [Arabidopsis thaliana (taxid:3702)]

 Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
 Identities = 151/267 (56%), Positives = 191/267 (71%)

Query:    99 NFCSR-RLATFASISPFLGHRSYSSFFGSKTDKSTEIDVPAASSGSETDVSNHGIVGSDS 157
             +F S  RL + A    +L H SY+  F SK+D    I V +  +GS     N    G+D 
Sbjct:     3 SFSSNIRLHSDAKPFNYLSHSSYARAFSSKSDDFGSI-VASGVTGSGD--GN----GNDW 55

Query:   158 FDKIKDAWKSVVDGVSYTGQKAKD---ELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA 214
              +K KD  ++ V+ V+ T +K KD   E+ P ++Q LD++PYL+DVIVPVS  +TGT+ A
Sbjct:    56 VEKAKDVVQTSVNAVAETAKKTKDVSDEMIPHVQQFLDSNPYLKDVIVPVSLTVTGTLFA 115

Query:   215 WVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM 274
             W+VMPR+LRRFH YA+Q    LL  G S E +PYEKSFWGALEDP RYL+TF+AF QI  
Sbjct:   116 WIVMPRILRRFHTYAMQSSAKLLPVGFSNEDIPYEKSFWGALEDPARYLVTFIAFAQIAA 175

Query:   275 MVAPTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRIS 334
             MVAPTTIA+QY +   +GAVILS VWFL+RWKTNV TR ++++S  GLDR+K+L LD++S
Sbjct:   176 MVAPTTIAAQYFSPTVKGAVILSVVWFLYRWKTNVITRMLSAKSFGGLDRDKVLTLDKVS 235

Query:   335 SVGLFVIGLMALAEACGVAVQSILTVG 361
             SVGLF IGLMA AEACGVAVQSILTVG
Sbjct:   236 SVGLFAIGLMASAEACGVAVQSILTVG 262


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.133   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      380       367   0.00084  117 3  11 22  0.50    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  615 (65 KB)
  Total size of DFA:  239 KB (2129 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  36.08u 0.11s 36.19t   Elapsed:  00:00:02
  Total cpu time:  36.08u 0.11s 36.19t   Elapsed:  00:00:02
  Start:  Tue May 21 03:12:22 2013   End:  Tue May 21 03:12:24 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	380
PRK11465	741	putative mechanosensitive channel protein; Provisi	99.59
PRK10334	286	mechanosensitive channel MscS; Provisional	99.43
PRK10929	1109	putative mechanosensitive channel protein; Provisi	99.13
PRK11281	1113	hypothetical protein; Provisional	99.13
COG0668	316	MscS Small-conductance mechanosensitive channel [C	98.81
COG3264	835	Small-conductance mechanosensitive channel [Cell e	98.43
PF05552	53	TM_helix: Conserved TM helix; InterPro: IPR008910	92.58
PRK10334	286	mechanosensitive channel MscS; Provisional	88.72
PF12794	340	MscS_TM: Mechanosensitive ion channel inner membra	80.15

>PRK11465 putative mechanosensitive channel protein; Provisional

Probab=99.59  E-value=8.1e-14  Score=150.62  Aligned_cols=132  Identities=14%  Similarity=0.121  Sum_probs=98.4

Q ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc-----hhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhh
Q 016947          245 QVPYEKSFWGALEDPVRYLITFMAFVQIGMMVAPT-----TIASQYLAQAWRGAVIL---SFVWFLHRWKTNVFTRAMAS  316 (380)
Q Consensus       245 ~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll~p~-----~~~~~~L~~il~illIl---il~W~l~Rlv~~~i~~~l~r  316 (380)
                      .+.|++.+.++++ |+.+++++++++.+...+...     ......+..+..+++++   .++|.+.+   ..+++.+.+
T Consensus       419 ~~~~~~~~l~~lr-~l~~~~~vl~ll~a~~~l~l~~~~~~~~g~~~i~~l~~i~iil~i~~v~w~l~~---~~ie~~l~~  494 (741)
T PRK11465        419 LNGWLSAALKTAR-ILTVCVAVMLLLNAWGLFDFWNWLQNGAGEKTVDILIRIALILFFSAVGWTVLA---SLIENRLAS  494 (741)
T ss_pred             HhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhcchHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhh
Confidence            5679999999999 999999988888865533221     11233344444444444   55666655   222332221


Q ss_pred             h-----cccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947          317 Q-----SIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH  380 (380)
Q Consensus       317 ~-----~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF  380 (380)
                      +     .....++++.+++++++++++++++++++|+.+|+++++++|++|++|+|||||+|++++|||
T Consensus       495 ~~~~~~~~~~r~~Tl~~ll~~~~~~~i~~i~~l~vL~~lGi~it~LlA~aGi~GlaiGfaaQ~~l~N~i  563 (741)
T PRK11465        495 DIHGRPLPSARTRTLLTLFRNALAVIISTITIMIVLSEIGVNIAPLLAGAGALGLAISFGSQTLVKDII  563 (741)
T ss_pred             hhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1     112457899999999999999999999999999999999999999999999999999999985

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=99.43  E-value=1.3e-12  Score=127.89  Aligned_cols=95  Identities=22%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHh
Q 016947          283 SQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGG  362 (380)
Q Consensus       283 ~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglG  362 (380)
                      ..+.++++..+++++++|++.|++..+.++.+.++   +.|++...++.+++++++++++++.+++.+|+++++++|++|
T Consensus        25 ~~~~~~i~~al~il~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~i~~~~~~~~l~~lGi~~~~l~a~~G  101 (286)
T PRK10334         25 LSYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLG  101 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            44667888889999999999999999998887553   578889999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhcC
Q 016947          363 IGGQCLLLATCSLLFLFH  380 (380)
Q Consensus       363 IGGIAVGLAAQdtLsNfF  380 (380)
                      ++|+|+|||+||+++|++
T Consensus       102 ~~glaiG~a~q~~l~N~~  119 (286)
T PRK10334        102 AAGLAVGLALQGSLSNLA  119 (286)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999999985

>PRK10929 putative mechanosensitive channel protein; Provisional

Probab=99.13  E-value=3.9e-09  Score=119.03  Aligned_cols=93  Identities=15%  Similarity=0.092  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHH
Q 016947          286 LAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGG  365 (380)
Q Consensus       286 L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGG  365 (380)
                      +..++.++++++++|++.|++..+.++.+.++  .+.|+....++.++++++++++|++++++.+|++.+++.+.+|+.|
T Consensus       833 l~~ll~AllIliv~~~l~r~l~~lle~~l~~~--~~l~~~~~~~i~~l~~y~I~~ig~l~~L~~lGI~~t~l~al~galG  910 (1109)
T PRK10929        833 LGSVLIAILVFIITTQLVRNLPALLELALLQH--LDLTPGTGYAITTITKYLLMLIGGLVGFSMIGIEWSKLQWLVAALG  910 (1109)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCChhHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            35677778889999999999999988877443  3678899999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhcC
Q 016947          366 QCLLLATCSLLFLFH  380 (380)
Q Consensus       366 IAVGLAAQdtLsNfF  380 (380)
                      ++||||+||+++||+
T Consensus       911 VgIGfAlQ~ilsNfi  925 (1109)
T PRK10929        911 VGLGFGLQEIFANFI  925 (1109)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999985

>PRK11281 hypothetical protein; Provisional

Probab=99.13  E-value=3.8e-09  Score=119.35  Aligned_cols=94  Identities=14%  Similarity=0.120  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHH
Q 016947          285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIG  364 (380)
Q Consensus       285 ~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIG  364 (380)
                      .++.++.++++++++|++.|++..+.++...++  .+.++....++.++++++++++|+++++..+|++.+++.+.+|.+
T Consensus       835 tl~~Ll~allIl~i~~~l~r~l~~ll~~~~~~r--l~l~~~~~~~i~~li~y~I~~i~iliaL~~lGi~~t~L~~l~gaL  912 (1113)
T PRK11281        835 TLGNLLFALIILVVTYVLVRNLPGLLEVLVLSR--LNLRQGTSYAITTLLTYIIIAVGAVTAFSTLGVSWDKLQWLVAAL  912 (1113)
T ss_pred             eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence            357888889999999999999998887765332  255667778899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcC
Q 016947          365 GQCLLLATCSLLFLFH  380 (380)
Q Consensus       365 GIAVGLAAQdtLsNfF  380 (380)
                      |+++|||+|++++||+
T Consensus       913 gVgIGfglQ~ilsNfI  928 (1113)
T PRK11281        913 SVGLGFGLQEIFANFV  928 (1113)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999999985

>COG0668 MscS Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=98.81  E-value=5.5e-08  Score=93.37  Aligned_cols=58  Identities=24%  Similarity=0.262  Sum_probs=53.8

Q ss_pred             chHHHH-HHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947          323 DREKML-ALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH  380 (380)
Q Consensus       323 d~t~i~-~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF  380 (380)
                      +..... ++.++.++++++++++.++..+|+++++++|++|++|+|+|||+|++++|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~lla~~G~~glaigla~q~~~~n~~  137 (316)
T COG0668          79 RETTLSVFLSNLLRILILVVALLIVLSVLGVQVTSLLAGLGALGLAIGLALQDLLSNLI  137 (316)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            444555 8999999999999999999999999999999999999999999999999985

>COG3264 Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=98.43  E-value=1.9e-05  Score=86.69  Aligned_cols=91  Identities=13%  Similarity=0.150  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHH
Q 016947          287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQ  366 (380)
Q Consensus       287 ~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGI  366 (380)
                      ..++..++++++++++.|++.++.+...-++  .+.|+-....+.++++++++.+|+++.++.+|+|.+++--.+|..|+
T Consensus       559 ~~ll~avl~~~~~~~l~r~~~~~L~~~vl~r--~~~~~G~r~~I~t~~~Y~~~~i~~l~~lS~~Gi~lssL~~~~gALsv  636 (835)
T COG3264         559 GALLQAVLLFLITYVLTRNLPGWLEVRVLQR--LDLDAGTRYSITTLLGYLLIAIGGLVGLSTLGIDLSSLQWLAGALSV  636 (835)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccCcchHHHHHHHHHHHHHHHHHHHHHHHcCcChHHHHHHHHHhhh
Confidence            4567778888999999999999888554433  46788888899999999999999999999999999999999999999


Q ss_pred             HHHHhhhhhhhhc
Q 016947          367 CLLLATCSLLFLF  379 (380)
Q Consensus       367 AVGLAAQdtLsNf  379 (380)
                      .+||+.|++.+||
T Consensus       637 GiGFGLQ~I~~NF  649 (835)
T COG3264         637 GLGFGLQEIVSNF  649 (835)
T ss_pred             hhchhHHHHHHHh
Confidence            9999999999998

>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence

Probab=92.58  E-value=0.23  Score=36.94  Aligned_cols=41  Identities=20%  Similarity=0.484  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchH
Q 016947          282 ASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDRE  325 (380)
Q Consensus       282 ~~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t  325 (380)
                      ...++|++...+++++++|++.+++..+.++.+.+.   +.|++
T Consensus        11 ii~~lP~iv~AilIl~vG~~va~~v~~~~~~~l~~~---~~d~~   51 (53)
T PF05552_consen   11 IIAYLPNIVGAILILIVGWWVAKFVRKLVRRLLEKR---GVDKT   51 (53)
T ss_dssp             --GGHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---TS-HH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCccc
Confidence            456789999999999999999999999999999875   55654

It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.

>PRK10334 mechanosensitive channel MscS; Provisional

Probab=88.72  E-value=21  Score=35.43  Aligned_cols=59  Identities=14%  Similarity=0.152  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016947          202 VPVSCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGM  274 (380)
Q Consensus       202 v~l~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~l~~~  274 (380)
                      ..++.+++..+++|++.+++.+.+++...++              ..+..+...+.+-++++++++++..+..
T Consensus        29 ~~i~~al~il~~~~~~~~~i~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~i~~~~~~~~l~   87 (286)
T PRK10334         29 VNIVAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALG   87 (286)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555556666655555555555443              3456667777888888888777766444

>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1

Probab=80.15  E-value=71  Score=32.34  Aligned_cols=106  Identities=14%  Similarity=0.058  Sum_probs=65.1

Q ss_pred             cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q 016947          244 EQVPYEKSFWGALEDPVRYLITFMAFVQIGMMV---APTTIASQYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIA  320 (380)
Q Consensus       244 ~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll---~p~~~~~~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~  320 (380)
                      .+-.|.+...+.+++-.+.+++++.........   .|.....+.+.++..++..+.++|+..+..+.-......     
T Consensus       113 ~HF~w~~~~~~~~r~~l~~~~~~~~pl~~~~~~~~~~~~~~~~d~LGrl~~ii~~~~l~~~~~~l~~~~~~~~~~-----  187 (340)
T PF12794_consen  113 RHFGWPKERVQRLRRQLRWLIWVLVPLLFISIFAENLPDGLARDVLGRLAFIILLLLLAVFLWRLLRPGWGLYQP-----  187 (340)
T ss_pred             ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhHHHHHHHHHHHHHHHHHHHHHccccccccC-----
Confidence            356789999999999999998887555532211   334445667788777777788888887765543222221     


Q ss_pred             ccchHHHHHHHHHHHHHHHHH-HHHHHHHHcCCcHH
Q 016947          321 GLDREKMLALDRISSVGLFVI-GLMALAEACGVAVQ  355 (380)
Q Consensus       321 ~~d~t~i~~L~rlikvlI~vI-gvl~iL~~lGI~Vt  355 (380)
                       .+......+.++...++.++ -+++++..+|+--|
T Consensus       188 -~~~~~~~~~~~l~~~~li~~Pl~li~la~~GY~yT  222 (340)
T PF12794_consen  188 -KPDSWIHRLRYLWWPLLILAPLALIVLALLGYYYT  222 (340)
T ss_pred             -CCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence             12334455556665555444 34445556676544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	380
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 48/332 (14%), Positives = 92/332 (27%), Gaps = 104/332 (31%)

Query: 17  IYPSFKPRLLHTSNSYFKLARYAEQKHVKLSCAVVNNNYDNSRLHSALNSINNQLKVHGF 76
           +Y   + RL + +  + K      Q ++KL  A+         L  A N     + + G 
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL-------LELRPAKN-----VLIDGV 158

Query: 77  APIGKT--------------------------QCHKANAV-----SSYLPTSKNFCSRRL 105
              GKT                           C+    V             N+ SR  
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 106 ATFASISPFLGHRSY-SSFFGSKTDKSTEI--DVPAASSGSETDVSNHGIVGSDSFD--- 159
            +          ++       SK  ++  +             +V N      ++F+   
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQNAKAW--NAFNLSC 266

Query: 160 KI----KDAWKSVVDGVSYTGQKAKDELSPQIEQLLDAHPYLRDVIVPVSCYLTGTVLA- 214
           KI    +   K V D +S                    H  L    + ++     ++L  
Sbjct: 267 KILLTTRF--KQVTDFLSAATTT---------------HISLDHHSMTLTPDEVKSLLLK 309

Query: 215 WVVM-----PRVLRRFHKYAIQGPVSLLSGGLSI----EQVPYEK------SFWGALEDP 259
           ++       PR +   +   +      +  GL+     + V  +K      S    LE  
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 260 -VRYLITFMAFVQIGMMVAPTTIASQYLAQAW 290
             R +     F ++ +      I +  L+  W
Sbjct: 370 EYRKM-----FDRLSVFPPSAHIPTILLSLIW 396

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	380
2vv5_A	286	MSCS, small-conductance mechanosensitive channel;	99.37
3udc_A	285	Small-conductance mechanosensitive channel, C-TER	99.24

>2vv5_A MSCS, small-conductance mechanosensitive channel; ION transport, transmembrane, inner membrane, membrane struc membrane protein, membrane; 3.45A {Escherichia coli} SCOP: b.38.1.3 d.58.43.1 f.34.1.1 PDB: 2oau_A

Probab=99.37  E-value=1e-12  Score=126.28  Aligned_cols=94  Identities=22%  Similarity=0.245  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhH
Q 016947          284 QYLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGI  363 (380)
Q Consensus       284 ~~L~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGI  363 (380)
                      .++++++.+++++.++|++.|++..+.++.+.+.   +.|++...++.+++++++++++++.+++.+|+++++++|++|+
T Consensus        26 ~~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~i~~i~~~~~l~~~gi~~~~l~a~~g~  102 (286)
T 2vv5_A           26 SYAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGA  102 (286)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            3566778888899999999999999988887664   6788999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhhhcC
Q 016947          364 GGQCLLLATCSLLFLFH  380 (380)
Q Consensus       364 GGIAVGLAAQdtLsNfF  380 (380)
                      +|+|+|||+||+++||+
T Consensus       103 ~g~aig~a~q~~l~n~~  119 (286)
T 2vv5_A          103 AGLVVGLALQGSLSNLA  119 (286)
T ss_dssp             HHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999985

>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*

Probab=99.24  E-value=5.4e-11  Score=114.19  Aligned_cols=59  Identities=12%  Similarity=0.117  Sum_probs=55.7

Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHHHHHHhhhhhhhhcC
Q 016947          322 LDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQCLLLATCSLLFLFH  380 (380)
Q Consensus       322 ~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGIAVGLAAQdtLsNfF  380 (380)
                      .++++.+++.+++++++++++++++++.+|+++++++|++|++|+|+|||+||+++||+
T Consensus        60 ~~~tl~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~l~a~~g~~g~aig~a~q~~l~n~~  118 (285)
T 3udc_A           60 KIDTLTSLTKNAVRYIIYFLAGASILKLFNIDMTSLLAVAGIGSLAIGFGAQNLVKDMI  118 (285)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34678889999999999999999999999999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	380
d2vv5a3	86	f.34.1.1 (A:27-112) Mechanosensitive channel prote	1e-05

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]} Length = 86

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

 Score = 41.2 bits (97), Expect = 1e-05
 Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 285 YLAQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLM 344
           Y         I+     + R  +N   R M S+    +D      L  +   G+    L+
Sbjct: 1   YAVNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLI 57

Query: 345 ALAEACGVAVQSILTVGGIGG 365
           A     GV   S++ V G  G
Sbjct: 58  AALGRVGVQTASVIAVLGAAG 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	380
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	99.53
d2vv5a3	86	Mechanosensitive channel protein MscS (YggB), tran	89.55

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=99.53  E-value=1.6e-14  Score=113.81  Aligned_cols=84  Identities=23%  Similarity=0.256  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHhHHHH
Q 016947          287 AQAWRGAVILSFVWFLHRWKTNVFTRAMASQSIAGLDREKMLALDRISSVGLFVIGLMALAEACGVAVQSILTVGGIGGQ  366 (380)
Q Consensus       287 ~~il~illIlil~W~l~Rlv~~~i~~~l~r~~~~~~d~t~i~~L~rlikvlI~vIgvl~iL~~lGI~VtsLLAglGIGGI  366 (380)
                      .+++..++++.++|++.|+++...++.++++   +.|++..+++.++.++.+++++++++++.+|+|+++++|++|++|+
T Consensus         3 ~~il~~l~il~i~~~i~~~i~~~~~~~~~~~---~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~Gi~~t~l~a~~G~~gv   79 (86)
T d2vv5a3           3 VNIVAALAIIIVGLIIARMISNAVNRLMISR---KIDATVADFLSALVRYGIIAFTLIAALGRVGVQTASVIAVLGAAGL   79 (86)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CCChHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            4566778888999999999999999888764   6799999999999999999999999999999999999999999999


Q ss_pred             HHHHhhh
Q 016947          367 CLLLATC  373 (380)
Q Consensus       367 AVGLAAQ  373 (380)
                      |+|||+|
T Consensus        80 aiGfa~Q   86 (86)
T d2vv5a3          80 VVGLALQ   86 (86)
T ss_dssp             HHHHHHT
T ss_pred             HHHHhcC
Confidence            9999999

>d2vv5a3 f.34.1.1 (A:27-112) Mechanosensitive channel protein MscS (YggB), transmembrane region {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Mechanosensitive channel protein MscS (YggB), transmembrane region
superfamily: Mechanosensitive channel protein MscS (YggB), transmembrane region
family: Mechanosensitive channel protein MscS (YggB), transmembrane region
domain: Mechanosensitive channel protein MscS (YggB), transmembrane region
species: Escherichia coli [TaxId: 562]

Probab=89.55  E-value=1.6  Score=32.00  Aligned_cols=59  Identities=14%  Similarity=0.133  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCccccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 016947          205 SCYLTGTVLAWVVMPRVLRRFHKYAIQGPVSLLSGGLSIEQVPYEKSFWGALEDPVRYLITFMAFVQIGMMVA  277 (380)
Q Consensus       205 ~ilLla~lla~lv~~~llrrL~k~a~kt~~~~l~~~~~~~~~~~ddsll~aL~~PlrllI~~ia~~l~~~ll~  277 (380)
                      +..++...+.|.+.+.+.+.++|..+|+              ..|+...+.+.+-.++.++++++..+.....
T Consensus         6 l~~l~il~i~~~i~~~i~~~~~~~~~~~--------------~~~~~~~~~i~~~~~~~i~~i~~~~~L~~~G   64 (86)
T d2vv5a3           6 VAALAIIIVGLIIARMISNAVNRLMISR--------------KIDATVADFLSALVRYGIIAFTLIAALGRVG   64 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------CSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc--------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3344444455666655555555555554              3577888889999999999999988665543