Citrus Sinensis ID: 016961

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380
MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNFYQ
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccEEEcccEEEEccccHHHHHHHHHHHHccccccccEEEEEEccccccccccccHHHHHHHHHHHHcEEEEEccccccHHHHHHHccccccccccccHHHHHccEEEEccEEccccccccccccccEEEEEcccccccccEEEEEccccEEEEEEccccccccEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccEEEEEEHHHHHHHHHHccccEEEEEEccccccHHHHHHcccccccccEEEEcccccccc
cccEEcccccccccccccccccccccccccHHHHccccHcccccccHHHHcccccccccccHHHHHHHHHHHHHHHHHHccEEccccEEEEEccHHHHHHHHHHHHHcccccEEccEEEEEccHHHHHHcccHHHHHHHHHHHHHcEEEEcccccccHHHHHHHccccccccHHHHHHHHHccEEEEEEccccccccccccccccEEEEEEcccHHHHcEEEEEcccEEEEEEEEEccccccEEEEEEEEcccEEEEEEEEEHHHHHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHHHHHHcHHHHHHccccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHEHHHHccHHHHHHHHcc
mlrlinssggslrssamspaaaTTKMMSsstvavknprwslcssnnsglfsghvnnrvsfrnqlapamsfrcfasatgidrvkvqnpivemdgdEMTRIIWQMIKDKlifpyldldikyydlgilnrdatddkvTVESAEATLKYNVAIkcatitpdetrmkefglksmwrspngtirnilngtvfrepilcqniprivpgwkkpicigrhafgdqyratdtvikgpgklkmvfdpedgtgpveldvynfkgPGIALAMYNVDESIRAFAESSMslafskkwplylsTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVwacknydgdvqsDLLAQgtvsahssafevsrapnfyq
mlrlinssggslrssaMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASatgidrvkvqnpivemdgDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESaeatlkynvaikcatitpdetrMKEFglksmwrspngtIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSlafskkwplYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSahssafevsrapnfyq
MLRLINssggslrssamsPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNFYQ
**************************************WSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ********************
**********************************************************************************KVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSS*FEV********
*********************************VKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNFYQ
*********************************************NSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNFY*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNFYQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query380 2.2.26 [Sep-21-2011]
Q40345 433 Isocitrate dehydrogenase N/A no 0.786 0.690 0.762 1e-142
P50217 416 Isocitrate dehydrogenase N/A no 0.739 0.675 0.804 1e-140
P50218 415 Isocitrate dehydrogenase N/A no 0.744 0.681 0.795 1e-140
Q06197 413 Isocitrate dehydrogenase no no 0.739 0.680 0.804 1e-139
Q04467 452 Isocitrate dehydrogenase yes no 0.739 0.621 0.683 1e-121
Q4R502 452 Isocitrate dehydrogenase N/A no 0.739 0.621 0.679 1e-119
P48735 452 Isocitrate dehydrogenase yes no 0.739 0.621 0.679 1e-119
P56574 452 Isocitrate dehydrogenase yes no 0.739 0.621 0.669 1e-119
P54071 452 Isocitrate dehydrogenase yes no 0.739 0.621 0.669 1e-118
P33198 421 Isocitrate dehydrogenase yes no 0.739 0.667 0.669 1e-118
>sp|Q40345|IDHP_MEDSA Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa PE=2 SV=1 Back     alignment and function desciption
 Score =  505 bits (1301), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 234/307 (76%), Positives = 264/307 (85%), Gaps = 8/307 (2%)

Query: 63  QLAPAMSFRCF-------ASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDL 115
           Q +P +SF  F        +  G  ++KV NPIVEMDGDEMTRIIW+ IKDKLIFP+++L
Sbjct: 1   QFSPNLSFSAFFPIITFTTATMGFQKIKVANPIVEMDGDEMTRIIWKYIKDKLIFPFVEL 60

Query: 116 DIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNG 175
           DIKY+DLG+  RD T+DKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNG
Sbjct: 61  DIKYFDLGLPYRDETNDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNG 120

Query: 176 TIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFD 235
           TIRNILNGTVFREPI+C+NIPR++PGW KPICIGRHAFGDQYRATD+VIKGPGKLK+VF 
Sbjct: 121 TIRNILNGTVFREPIICKNIPRLIPGWTKPICIGRHAFGDQYRATDSVIKGPGKLKLVFV 180

Query: 236 PEDGTGPVELDVYNFKGP-GIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILK 294
           PE      +L+VYNF G  G+ALAMYN DESIR+FAE+SM++A  KKWPLYLSTKNTILK
Sbjct: 181 PEGQGETTDLEVYNFTGEGGVALAMYNTDESIRSFAEASMAVALEKKWPLYLSTKNTILK 240

Query: 295 KYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQ 354
           KYDGRFKDIFQ+VYE  W+ K+E   IWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQ
Sbjct: 241 KYDGRFKDIFQEVYEAGWKSKYEAAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDVQ 300

Query: 355 SDLLAQG 361
           SD LAQG
Sbjct: 301 SDFLAQG 307

Medicago sativa (taxid: 3879)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 2
>sp|P50217|IDHC_SOLTU Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum GN=ICDH-1 PE=2 SV=1 Back     alignment and function description
>sp|P50218|IDHC_TOBAC Isocitrate dehydrogenase [NADP] OS=Nicotiana tabacum PE=2 SV=1 Back     alignment and function description
>sp|Q06197|IDHC_SOYBN Isocitrate dehydrogenase [NADP] OS=Glycine max GN=IDH1 PE=2 SV=2 Back     alignment and function description
>sp|Q04467|IDHP_BOVIN Isocitrate dehydrogenase [NADP], mitochondrial OS=Bos taurus GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|Q4R502|IDHP_MACFA Isocitrate dehydrogenase [NADP], mitochondrial OS=Macaca fascicularis GN=IDH2 PE=2 SV=1 Back     alignment and function description
>sp|P48735|IDHP_HUMAN Isocitrate dehydrogenase [NADP], mitochondrial OS=Homo sapiens GN=IDH2 PE=1 SV=2 Back     alignment and function description
>sp|P56574|IDHP_RAT Isocitrate dehydrogenase [NADP], mitochondrial OS=Rattus norvegicus GN=Idh2 PE=1 SV=2 Back     alignment and function description
>sp|P54071|IDHP_MOUSE Isocitrate dehydrogenase [NADP], mitochondrial OS=Mus musculus GN=Idh2 PE=1 SV=3 Back     alignment and function description
>sp|P33198|IDHP_PIG Isocitrate dehydrogenase [NADP], mitochondrial (Fragment) OS=Sus scrofa GN=IDH2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
296087635 540 unnamed protein product [Vitis vinifera] 0.928 0.653 0.795 1e-168
359488679 486 PREDICTED: isocitrate dehydrogenase [NAD 0.928 0.726 0.795 1e-168
255567385470 NADP-specific isocitrate dehydrogenase, 0.928 0.751 0.774 1e-167
31339162 485 NADP-specific isocitrate dehydrogenase [ 0.918 0.719 0.785 1e-166
297811591 492 hypothetical protein ARALYDRAFT_488300 [ 0.831 0.642 0.858 1e-166
357495781 482 Isocitrate dehydrogenase-like protein [M 0.905 0.713 0.805 1e-165
22326811 485 isocitrate dehydrogenase [Arabidopsis th 0.831 0.651 0.851 1e-165
7573308465 isocitrate dehydrogenase-like protein [A 0.826 0.675 0.848 1e-162
5738864470 isocitrate dehydrogenase (NAD+) [Solanum 0.805 0.651 0.857 1e-162
356513947470 PREDICTED: isocitrate dehydrogenase [NAD 0.855 0.691 0.810 1e-162
>gi|296087635|emb|CBI34891.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 287/361 (79%), Positives = 316/361 (87%), Gaps = 8/361 (2%)

Query: 1   MLRLINSSGGSLRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVNNRVSF 60
           MLR++      LR  AMS AA      SSS++A+KNP  S+  S++   F+G +    S 
Sbjct: 55  MLRVLRPK---LRFGAMSGAAI---FPSSSSLALKNPNLSI--SSDQRFFNGILFKNGSI 106

Query: 61  RNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYY 120
            +   P  S RCFASA   DRV+VQNPIVEMDGDEM RI+W+MIKDKLIFPYLDLDI+Y+
Sbjct: 107 LHDRFPNASLRCFASAATFDRVRVQNPIVEMDGDEMARIMWRMIKDKLIFPYLDLDIRYF 166

Query: 121 DLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNI 180
           DLGILNRDATDDKVTVESAEATLKYNVA+KCATITPDE R+KEFGLKSMWRSPNGTIRNI
Sbjct: 167 DLGILNRDATDDKVTVESAEATLKYNVAVKCATITPDEARVKEFGLKSMWRSPNGTIRNI 226

Query: 181 LNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGT 240
           LNGTVFREPILCQN+PRIVPGWKKPICIGRHAFGDQYRATDTV++GPGKLK+VF PE+G 
Sbjct: 227 LNGTVFREPILCQNVPRIVPGWKKPICIGRHAFGDQYRATDTVVEGPGKLKLVFAPENGD 286

Query: 241 GPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRF 300
            PVEL+VY+FKGPGIALAMYNVDESIRAFAESSMSLAF+KKWPLYLSTKNTILKKYDGRF
Sbjct: 287 PPVELNVYDFKGPGIALAMYNVDESIRAFAESSMSLAFAKKWPLYLSTKNTILKKYDGRF 346

Query: 301 KDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ 360
           KDIFQ VYEE W+QKFEEHSIWYEHRLIDDMVAYA+KS+GGYVWACKNYDGDVQSDLLAQ
Sbjct: 347 KDIFQDVYEENWKQKFEEHSIWYEHRLIDDMVAYALKSDGGYVWACKNYDGDVQSDLLAQ 406

Query: 361 G 361
           G
Sbjct: 407 G 407

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359488679|ref|XP_002276200.2| PREDICTED: isocitrate dehydrogenase [NADP]-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255567385|ref|XP_002524672.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] gi|223536033|gb|EEF37691.1| NADP-specific isocitrate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|31339162|dbj|BAC77065.1| NADP-specific isocitrate dehydrogenase [Lupinus albus] Back     alignment and taxonomy information
>gi|297811591|ref|XP_002873679.1| hypothetical protein ARALYDRAFT_488300 [Arabidopsis lyrata subsp. lyrata] gi|297319516|gb|EFH49938.1| hypothetical protein ARALYDRAFT_488300 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357495781|ref|XP_003618179.1| Isocitrate dehydrogenase-like protein [Medicago truncatula] gi|355493194|gb|AES74397.1| Isocitrate dehydrogenase-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|22326811|ref|NP_196963.2| isocitrate dehydrogenase [Arabidopsis thaliana] gi|20466434|gb|AAM20534.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] gi|23198136|gb|AAN15595.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] gi|332004668|gb|AED92051.1| isocitrate dehydrogenase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|7573308|emb|CAB87626.1| isocitrate dehydrogenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|5738864|emb|CAA63220.1| isocitrate dehydrogenase (NAD+) [Solanum tuberosum] Back     alignment and taxonomy information
>gi|356513947|ref|XP_003525669.1| PREDICTED: isocitrate dehydrogenase [NADP], chloroplastic-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query380
TAIR|locus:2222672 485 AT5G14590 [Arabidopsis thalian 0.897 0.703 0.812 2.3e-151
TAIR|locus:2020128 416 ICDH "isocitrate dehydrogenase 0.742 0.677 0.787 1.4e-126
TAIR|locus:2009759 410 cICDH "cytosolic NADP+-depende 0.736 0.682 0.770 5.7e-123
UNIPROTKB|Q04467 452 IDH2 "Isocitrate dehydrogenase 0.739 0.621 0.683 8.7e-111
UNIPROTKB|F1PAM3 422 IDH2 "Isocitrate dehydrogenase 0.739 0.665 0.676 6.1e-110
UNIPROTKB|P48735 452 IDH2 "Isocitrate dehydrogenase 0.739 0.621 0.679 1.6e-109
UNIPROTKB|Q4R502 452 IDH2 "Isocitrate dehydrogenase 0.739 0.621 0.679 1.6e-109
RGD|1597139 452 Idh2 "isocitrate dehydrogenase 0.739 0.621 0.669 4.3e-109
MGI|MGI:96414 452 Idh2 "isocitrate dehydrogenase 0.739 0.621 0.669 1.1e-108
DICTYBASE|DDB_G0272210 428 idhM "isocitrate dehydrogenase 0.736 0.654 0.672 1.9e-108
TAIR|locus:2222672 AT5G14590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 278/342 (81%), Positives = 305/342 (89%)

Query:    21 AATTKMMSSSTVAVKNPRWSLCSSNNSGLFS-GHVNNRVSFRNQLAPAMSFRCFASATGI 79
             A+ T M+SSST A  +  +      +SG+FS G   NRV+F  Q   A + RCFAS+ G 
Sbjct:    14 ASLTAMLSSSTSAGLSSSFVSSRFLSSGIFSSGASRNRVTFPVQFHRASAVRCFASSGGS 73

Query:    80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESA 139
             DR++VQNPIVEMDGDEMTR+IW MIK+KLI PYLDLDIKY+DLGILNRDATDDKVTVESA
Sbjct:    74 DRIQVQNPIVEMDGDEMTRVIWSMIKEKLILPYLDLDIKYFDLGILNRDATDDKVTVESA 133

Query:   140 EATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIV 199
             EA LKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNIL+GTVFREPI+C NIPR+V
Sbjct:   134 EAALKYNVAIKCATITPDEGRVKEFGLKSMWRSPNGTIRNILDGTVFREPIMCSNIPRLV 193

Query:   200 PGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAM 259
             PGW+KPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+FKGPG+ALAM
Sbjct:   194 PGWEKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALAM 253

Query:   260 YNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH 319
             YNVDESIRAFAESSM++A +KKWPLYLSTKNTILKKYDGRFKDIFQ+VYE  W+QKFEEH
Sbjct:   254 YNVDESIRAFAESSMAMALTKKWPLYLSTKNTILKKYDGRFKDIFQEVYEANWKQKFEEH 313

Query:   320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
             SIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQG
Sbjct:   314 SIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQG 355
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0004450 "isocitrate dehydrogenase (NADP+) activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006102 "isocitrate metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=ISS
GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA
GO:0051287 "NAD binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
TAIR|locus:2020128 ICDH "isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2009759 cICDH "cytosolic NADP+-dependent isocitrate dehydrogenase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q04467 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAM3 IDH2 "Isocitrate dehydrogenase [NADP]" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P48735 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4R502 IDH2 "Isocitrate dehydrogenase [NADP], mitochondrial" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms
RGD|1597139 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:96414 Idh2 "isocitrate dehydrogenase 2 (NADP+), mitochondrial" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0272210 idhM "isocitrate dehydrogenase (NADP+)" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q04467IDHP_BOVIN1, ., 1, ., 1, ., 4, 20.68320.73940.6216yesno
P65097IDH_MYCTU1, ., 1, ., 1, ., 4, 20.62410.73940.6870yesno
P65098IDH_MYCBO1, ., 1, ., 1, ., 4, 20.62410.73940.6870yesno
P48735IDHP_HUMAN1, ., 1, ., 1, ., 4, 20.67970.73940.6216yesno
Q75JR2IDHP_DICDI1, ., 1, ., 1, ., 4, 20.67250.73680.6542yesno
P54071IDHP_MOUSE1, ., 1, ., 1, ., 4, 20.66900.73940.6216yesno
P21954IDHP_YEAST1, ., 1, ., 1, ., 4, 20.65100.77360.6869yesno
P33198IDHP_PIG1, ., 1, ., 1, ., 4, 20.66900.73940.6674yesno
Q40345IDHP_MEDSA1, ., 1, ., 1, ., 4, 20.76220.78680.6905N/Ano
P50217IDHC_SOLTU1, ., 1, ., 1, ., 4, 20.80490.73940.6754N/Ano
P50218IDHC_TOBAC1, ., 1, ., 1, ., 4, 20.79570.74470.6819N/Ano
P56574IDHP_RAT1, ., 1, ., 1, ., 4, 20.66900.73940.6216yesno
O14254IDHP_SCHPO1, ., 1, ., 1, ., 4, 20.65170.76050.6583yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.1.10.921
4th Layer1.1.1.420.914

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
PLN03065 483 PLN03065, PLN03065, isocitrate dehydrogenase (NADP 0.0
PLN00103 410 PLN00103, PLN00103, isocitrate dehydrogenase (NADP 0.0
PTZ00435 413 PTZ00435, PTZ00435, isocitrate dehydrogenase; Prov 0.0
PRK08299 402 PRK08299, PRK08299, isocitrate dehydrogenase; Vali 0.0
TIGR00127 409 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, 0.0
COG0538407 COG0538, Icd, Isocitrate dehydrogenases [Energy pr 1e-117
pfam00180349 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehy 2e-62
PLN00096393 PLN00096, PLN00096, isocitrate dehydrogenase (NADP 2e-36
>gnl|CDD|178617 PLN03065, PLN03065, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
 Score =  675 bits (1743), Expect = 0.0
 Identities = 292/351 (83%), Positives = 313/351 (89%), Gaps = 5/351 (1%)

Query: 12  LRSSAMSPAAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHVN-NRVSFRNQLAPAMSF 70
           LR  A  PA A   M SSS+ A  NP   L S+   G+F+G ++ NR +F  Q   A S 
Sbjct: 7   LRLLAYRPALAL--MPSSSSSAAANP--LLASNPCRGIFNGGLSKNRRAFHVQFHRASSV 62

Query: 71  RCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDAT 130
           RCFASA   DR+KVQNPIVEMDGDEMTR+IWQMIKDKLIFPYLDLDIKY+DLGILNRDAT
Sbjct: 63  RCFASAAAADRIKVQNPIVEMDGDEMTRVIWQMIKDKLIFPYLDLDIKYFDLGILNRDAT 122

Query: 131 DDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPI 190
           DDKVTVESAEATLKYNVAIKCATITPDE R+KEFGLKSMWRSPNGTIRNILNGTVFREPI
Sbjct: 123 DDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIRNILNGTVFREPI 182

Query: 191 LCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNF 250
           LC+NIPR+VPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVF PEDG  PVELDVY+F
Sbjct: 183 LCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDF 242

Query: 251 KGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEE 310
           KGPG+ALAMYNVDESIRAFAESSM++A  KKWPLYLSTKNTILKKYDGRFKDIFQ+VYEE
Sbjct: 243 KGPGVALAMYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEE 302

Query: 311 RWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
           +W+QKFEEHSIWYEHRLIDDMVAYA+KSEGGYVWACKNYDGDVQSDLLAQG
Sbjct: 303 QWKQKFEEHSIWYEHRLIDDMVAYAVKSEGGYVWACKNYDGDVQSDLLAQG 353

Length = 483
>gnl|CDD|177720 PLN00103, PLN00103, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>gnl|CDD|240417 PTZ00435, PTZ00435, isocitrate dehydrogenase; Provisional Back     alignment and domain information
>gnl|CDD|236226 PRK08299, PRK08299, isocitrate dehydrogenase; Validated Back     alignment and domain information
>gnl|CDD|129233 TIGR00127, nadp_idh_euk, isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>gnl|CDD|223612 COG0538, Icd, Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215773 pfam00180, Iso_dh, Isocitrate/isopropylmalate dehydrogenase Back     alignment and domain information
>gnl|CDD|177715 PLN00096, PLN00096, isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 380
PLN03065 483 isocitrate dehydrogenase (NADP+); Provisional 100.0
PTZ00435 413 isocitrate dehydrogenase; Provisional 100.0
TIGR00127 409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 100.0
PLN00096393 isocitrate dehydrogenase (NADP+); Provisional 100.0
PRK08299 402 isocitrate dehydrogenase; Validated 100.0
COG0473348 LeuB Isocitrate/isopropylmalate dehydrogenase [Ami 100.0
KOG1526 422 consensus NADP-dependent isocitrate dehydrogenase 100.0
PRK08997334 isocitrate dehydrogenase; Provisional 100.0
PLN00118372 isocitrate dehydrogenase (NAD+) 100.0
PLN00103 410 isocitrate dehydrogenase (NADP+); Provisional 100.0
TIGR02088322 LEU3_arch isopropylmalate/isohomocitrate dehydroge 100.0
PRK03437344 3-isopropylmalate dehydrogenase; Provisional 100.0
PRK14025330 multifunctional 3-isopropylmalate dehydrogenase/D- 100.0
PRK08194352 tartrate dehydrogenase; Provisional 100.0
PRK07006409 isocitrate dehydrogenase; Reviewed 100.0
TIGR00183416 prok_nadp_idh isocitrate dehydrogenase, NADP-depen 100.0
PRK06451412 isocitrate dehydrogenase; Validated 100.0
TIGR02089352 TTC tartrate dehydrogenase. Tartrate dehydrogenase 100.0
TIGR00175333 mito_nad_idh isocitrate dehydrogenase, NAD-depende 100.0
PLN02329409 3-isopropylmalate dehydrogenase 100.0
PLN00123360 isocitrate dehydrogenase (NAD+) 100.0
PRK09222 482 isocitrate dehydrogenase; Validated 100.0
TIGR00169349 leuB 3-isopropylmalate dehydrogenase. This model w 100.0
PRK00772358 3-isopropylmalate dehydrogenase; Provisional 100.0
TIGR02924 473 ICDH_alpha isocitrate dehydrogenase. This family o 100.0
PRK07362474 isocitrate dehydrogenase; Validated 100.0
KOG0785365 consensus Isocitrate dehydrogenase, alpha subunit 100.0
PF00180348 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; 100.0
COG0538407 Icd Isocitrate dehydrogenases [Energy production a 100.0
KOG0784375 consensus Isocitrate dehydrogenase, gamma subunit 100.0
KOG0786363 consensus 3-isopropylmalate dehydrogenase [Amino a 100.0
TIGR00127409 nadp_idh_euk isocitrate dehydrogenase, NADP-depend 88.51
>PLN03065 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information 
Probab=100.00  E-value=7.3e-92  Score=715.72  Aligned_cols=356  Identities=81%  Similarity=1.273  Sum_probs=325.9

Q ss_pred             hhhhhhccccccccccCCCcccccCCCCccccccc-cchhhhhccccchhhhhhhccccccccccccccEEEEcCCccHH
Q 016961           20 AAATTKMMSSSTVAVKNPRWSLCSSNNSGLFSGHV-NNRVSFRNQLAPAMSFRCFASATGIDRVKVQNPIVEMDGDEMTR   98 (380)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvvlpGDgIGp   98 (380)
                      ..+...|+++++++..||.++..+.+  +.|++.+ .+..........++.-|++++..+.+||+|++|||+|||||||+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~~~~piv~~~GDem~r   90 (483)
T PLN03065         13 RPALALMPSSSSSAAANPLLASNPCR--GIFNGGLSKNRRAFHVQFHRASSVRCFASAAAADRIKVQNPIVEMDGDEMTR   90 (483)
T ss_pred             chhhhhcccccchhhcCcccccCchh--hhccccccccccccccccccccchhhhcchhhhccccccCCeEEecCCcchH
Confidence            34556788889999999999988865  4555443 44444444444455667776655568999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcchhhhhcccccCCCCchhHh
Q 016961           99 IIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIR  178 (380)
Q Consensus        99 EV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~~~~~~~L~~~~~spn~~LR  178 (380)
                      |||+.++++|+.++++++|+|+|+|.+++++||+++|+|++++|+++||+||||++||+++|++||+|+++|+|||++||
T Consensus        91 ~i~~~i~~~li~p~~di~~~~~dlG~e~rd~Tgd~v~~da~~aikk~~v~lKgAt~TP~~~rv~e~~lk~~w~SpN~tiR  170 (483)
T PLN03065         91 VIWQMIKDKLIFPYLDLDIKYFDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDEARVKEFGLKSMWRSPNGTIR  170 (483)
T ss_pred             HHHHHHHHHHhcCCCCceEEEEeCcHHHHHhhCCcCCHHHHHHHHHcCEEEECcccCCccccccccccccccCCccHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCCCCcceeeecccCCcceeee
Q 016961          179 NILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALA  258 (380)
Q Consensus       179 k~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g~~~~~~~v~~~~~~~~~~~  258 (380)
                      ++||||+|+|||.|+++|++.++|+.||+|+|||+||+|.++|+++.++|+++++|++++++...+.++++|.++++.+.
T Consensus       171 ~~Ldl~v~rrPi~~~ni~r~vpg~~~pI~i~Rha~gd~Y~~iD~vi~~~g~~~~~~~rEnte~~~e~~v~~f~~~gva~~  250 (483)
T PLN03065        171 NILNGTVFREPILCKNIPRLVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFVPEDGNAPVELDVYDFKGPGVALA  250 (483)
T ss_pred             HHcCCeEEeeeeeccccCccCCCCCCCeEEeecccCCCcCceEEEEecCCeeEEEeecCCCCCcceeEeeccCCCCeEEE
Confidence            99999999999988999999999999999999999999999999999999999999999887777788899998888888


Q ss_pred             cccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCCCeeEehhhHHHHHHHHHHC
Q 016961          259 MYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKS  338 (380)
Q Consensus       259 ~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p~I~~e~~lIDa~a~~LVk~  338 (380)
                      ++||+++|+||||+||+||++|+++||++||+||||.|||+|+++|+|||+++||++|.+.+|+|+|+|||+||||||++
T Consensus       251 ~~nT~~sieriAr~AF~yA~~rk~~Vt~v~KaNILK~~DGlF~dif~eVa~~eyk~~yp~~~I~~e~~lIDa~~~~lvk~  330 (483)
T PLN03065        251 MYNVDESIRAFAESSMAMALQKKWPLYLSTKNTILKKYDGRFKDIFQEVYEEQWKQKFEEHSIWYEHRLIDDMVAYAVKS  330 (483)
T ss_pred             EEECHHHHHHHHHHHHHHHHHcCCCEEEEeCCCcccchHHHHHHHHHHHHHHhhhhcCCCCCceEEeeeHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999889999996668999999999999999999


Q ss_pred             CCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCCC
Q 016961          339 EGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPNF  378 (380)
Q Consensus       339 P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~~  378 (380)
                      |++|||||+|||||||||++||++|||||+ +|+|++|+-
T Consensus       331 P~~FViv~~NlfGDIlSDl~A~l~GsLGl~-pSanig~dg  369 (483)
T PLN03065        331 EGGYVWACKNYDGDVQSDLLAQGFGSLGLM-TSVLLSSDG  369 (483)
T ss_pred             CCCcEEEeeccchhhhhHHHHHhcCchhhc-ccceeCCCC
Confidence            999999999999999999999999999999 779999983

>PTZ00435 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information
>PLN00096 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>PRK08299 isocitrate dehydrogenase; Validated Back     alignment and domain information
>COG0473 LeuB Isocitrate/isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1526 consensus NADP-dependent isocitrate dehydrogenase [Energy production and conversion] Back     alignment and domain information
>PRK08997 isocitrate dehydrogenase; Provisional Back     alignment and domain information
>PLN00118 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PLN00103 isocitrate dehydrogenase (NADP+); Provisional Back     alignment and domain information
>TIGR02088 LEU3_arch isopropylmalate/isohomocitrate dehydrogenases Back     alignment and domain information
>PRK03437 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>PRK14025 multifunctional 3-isopropylmalate dehydrogenase/D-malate dehydrogenase; Provisional Back     alignment and domain information
>PRK08194 tartrate dehydrogenase; Provisional Back     alignment and domain information
>PRK07006 isocitrate dehydrogenase; Reviewed Back     alignment and domain information
>TIGR00183 prok_nadp_idh isocitrate dehydrogenase, NADP-dependent, prokaryotic type Back     alignment and domain information
>PRK06451 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR02089 TTC tartrate dehydrogenase Back     alignment and domain information
>TIGR00175 mito_nad_idh isocitrate dehydrogenase, NAD-dependent, mitochondrial type Back     alignment and domain information
>PLN02329 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PLN00123 isocitrate dehydrogenase (NAD+) Back     alignment and domain information
>PRK09222 isocitrate dehydrogenase; Validated Back     alignment and domain information
>TIGR00169 leuB 3-isopropylmalate dehydrogenase Back     alignment and domain information
>PRK00772 3-isopropylmalate dehydrogenase; Provisional Back     alignment and domain information
>TIGR02924 ICDH_alpha isocitrate dehydrogenase Back     alignment and domain information
>PRK07362 isocitrate dehydrogenase; Validated Back     alignment and domain information
>KOG0785 consensus Isocitrate dehydrogenase, alpha subunit [Amino acid transport and metabolism] Back     alignment and domain information
>PF00180 Iso_dh: Isocitrate/isopropylmalate dehydrogenase; InterPro: IPR024084 Isocitrate dehydrogenase (IDH) [, ] is an important enzyme of carbohydrate metabolism which catalyses the oxidative decarboxylation of isocitrate into alpha-ketoglutarate Back     alignment and domain information
>COG0538 Icd Isocitrate dehydrogenases [Energy production and conversion] Back     alignment and domain information
>KOG0784 consensus Isocitrate dehydrogenase, gamma subunit [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0786 consensus 3-isopropylmalate dehydrogenase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00127 nadp_idh_euk isocitrate dehydrogenase, NADP-dependent, eukaryotic type Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
1lwd_A 413 Crystal Structure Of Nadp-Dependent Isocitrate Dehy 1e-119
1t09_A414 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-118
3mas_B419 Crystal Structure Of Heterodimeric R132h Mutant Of 1e-118
3inm_A 425 Crystal Structure Of Human Cytosolic Nadp(+)-Depend 1e-117
3map_A 422 Crystal Structure Of Homodimeric R132h Mutant Of Hu 1e-117
2cmj_A410 Crystal Structure Of Mouse Cytosolic Isocitrate Deh 1e-116
2qfv_A 427 Crystal Structure Of Saccharomyces Cerevesiae Mitoc 1e-115
3us8_A 427 Crystal Structure Of An Isocitrate Dehydrogenase Fr 1e-114
4hcx_A 409 Structure Of Icdh-1 From M.tuberculosis Complexed W 1e-108
4aoy_A402 Open Ctidh. The Complex Structures Of Isocitrate De 8e-90
1zor_A 399 Isocitrate Dehydrogenase From The Hyperthermophile 5e-86
2uxq_A402 Isocitrate Dehydrogenase From The Psychrophilic Bac 2e-76
>pdb|1LWD|A Chain A, Crystal Structure Of Nadp-Dependent Isocitrate Dehydrogenase From Porcine Heart Mitochondria Length = 413 Back     alignment and structure 
Iteration: 1

 Score =  424 bits (1091), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 188/281 (66%), Positives = 231/281 (82%)
Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63
Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123
Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183
Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243
Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQG 361
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQG
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQG 284
>pdb|1T09|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex Nadp Length = 414 Back     alignment and structure
>pdb|3MAS|B Chain B, Crystal Structure Of Heterodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 419 Back     alignment and structure
>pdb|3INM|A Chain A, Crystal Structure Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase R132h Mutant In Complex With Nadph, Alpha-Ketoglutarate And Calcium(2+) Length = 425 Back     alignment and structure
>pdb|3MAP|A Chain A, Crystal Structure Of Homodimeric R132h Mutant Of Human Cytosolic Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp And Isocitrate Length = 422 Back     alignment and structure
>pdb|2CMJ|A Chain A, Crystal Structure Of Mouse Cytosolic Isocitrate Dehydrogenase Length = 410 Back     alignment and structure
>pdb|2QFV|A Chain A, Crystal Structure Of Saccharomyces Cerevesiae Mitochondrial Nadp(+)-Dependent Isocitrate Dehydrogenase In Complex With Nadp(+) Length = 427 Back     alignment and structure
>pdb|3US8|A Chain A, Crystal Structure Of An Isocitrate Dehydrogenase From Sinorhizobium Meliloti 1021 Length = 427 Back     alignment and structure
>pdb|4HCX|A Chain A, Structure Of Icdh-1 From M.tuberculosis Complexed With Nadph & Mn2+ Length = 409 Back     alignment and structure
>pdb|4AOY|A Chain A, Open Ctidh. The Complex Structures Of Isocitrate Dehydrogenase From Clostridium Thermocellum And Desulfotalea Psychrophila, Support A New Active Site Locking Mechanism Length = 402 Back     alignment and structure
>pdb|1ZOR|A Chain A, Isocitrate Dehydrogenase From The Hyperthermophile Thermotoga Maritima Length = 399 Back     alignment and structure
>pdb|2UXQ|A Chain A, Isocitrate Dehydrogenase From The Psychrophilic Bacterium Desulfotalea Psychrophila: Biochemical Properties And Crystal Structure Analysis Length = 402 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query380
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 1e-142
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 1e-141
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 1e-141
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 1e-139
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 1e-136
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 1e-133
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-13
2b0t_A 738 NADP isocitrate dehydrogenase; monomeric, IDH, oxi 5e-05
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 7e-04
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 7e-04
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Length = 427 Back     alignment and structure
 Score =  411 bits (1056), Expect = e-142
 Identities = 190/304 (62%), Positives = 234/304 (76%), Gaps = 1/304 (0%)

Query: 66  PAMSFRCFASATGIDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGIL 125
             +        + + ++KV NP+VE+DGDEMTRIIWQ IKDKLI PYLDLD++YYDLG+ 
Sbjct: 11  VDLGTENLYFQSMMAKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVE 70

Query: 126 NRDATDDKVTVESAEATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTV 185
           NRDATDD+VT+++A A  K+ V +KCATITPDE R++EF LK MW+SPNGTIRNIL G +
Sbjct: 71  NRDATDDQVTIDAANAIKKHGVGVKCATITPDEGRVEEFKLKKMWKSPNGTIRNILGGVI 130

Query: 186 FREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVEL 245
           FREPI+C+N+PR+VPGW KPI +GRHAFGDQYRATD    G GKL + F  EDG   +E 
Sbjct: 131 FREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDGQ-TIEH 189

Query: 246 DVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQ 305
           DVY+  G G+ALAMYN+DESI  FA +S +    +K P+YLSTKNTILK YDGRFKDIFQ
Sbjct: 190 DVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQ 249

Query: 306 QVYEERWRQKFEEHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSA 365
           +V++E +  +F+   +WYEHRLIDDMVA A+K  GGYVWACKNYDGDVQSD++AQG  S 
Sbjct: 250 KVFDEEFAAQFKAEKLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSL 309

Query: 366 HSSA 369
               
Sbjct: 310 GLMT 313
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Length = 427 Back     alignment and structure
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Length = 413 Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Length = 402 Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Length = 402 Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Length = 399 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2b0t_A NADP isocitrate dehydrogenase; monomeric, IDH, oxidoreductase; 1.75A {Corynebacterium glutamicum} PDB: 3mbc_A* Length = 738 Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Length = 354 Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Length = 349 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
3us8_A 427 Isocitrate dehydrogenase [NADP]; PSI-biology, stru 100.0
1lwd_A 413 Isocitrate dehydrogenase; tricarboxylic acid cycle 100.0
4aoy_A 402 Isocitrate dehydrogenase [NADP]; oxidoreductase, t 100.0
2uxq_A 402 Isocitrate dehydrogenase native; psychrophilic, co 100.0
1zor_A 399 Isocitrate dehydrogenase; wild type enzyme, CIS-pr 100.0
2qfy_A 427 Isocitrate dehydrogenase [NADP]; rossmann fold, ox 100.0
1x0l_A333 Homoisocitrate dehydrogenase; oxidoreductase, deca 100.0
1w0d_A337 3-isopropylmalate dehydrogenase; oxidoreductase, l 100.0
2y3z_A359 3-isopropylmalate dehydrogenase; oxidoreductase, L 100.0
3flk_A364 Tartrate dehydrogenase/decarboxylase; cytoplasm, l 100.0
3dms_A427 Isocitrate dehydrogenase [NADP]; struc genomics, s 100.0
1hqs_A423 Isocitrate dehydrogenase; glyoxylate bypass, bsidh 100.0
3u1h_A390 3-isopropylmalate dehydrogenase; oxidored; 2.80A { 100.0
3ty4_A366 Probable homoisocitrate dehydrogenase; B-hydroxyac 100.0
3vmk_A375 3-isopropylmalate dehydrogenase; oxidoreductase, d 100.0
2e0c_A409 409AA long hypothetical NADP-dependent isocitrate 100.0
3blx_A349 Isocitrate dehydrogenase [NAD] subunit 1; TCA cycl 100.0
2d1c_A 496 Isocitrate dehydrogenase; structural genomics, NPP 100.0
3blx_B354 Isocitrate dehydrogenase [NAD] subunit 2; TCA cycl 100.0
2iv0_A412 Isocitrate dehydrogenase; oxidoreductase, tricarbo 100.0
2d4v_A429 Isocitrate dehydrogenase; alpha and beta protein, 100.0
1cnz_A363 IPMDH, IMDH, protein (3-isopropylmalate dehydrogen 100.0
3r8w_A405 3-isopropylmalate dehydrogenase 2, chloroplastic; 100.0
1tyo_A435 Isocitrate dehydrogenase; enzyme-ethenonadp comple 100.0
3udu_A361 3-isopropylmalate dehydrogenase; structural genomi 100.0
1vlc_A366 3-isopropylmalate dehydrogenase; TM0556, structura 100.0
1wpw_A336 3-isopropylmalate dehydrogenase; oxidoreductase; 2 100.0
1a05_A358 IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxid 100.0
>3us8_A Isocitrate dehydrogenase [NADP]; PSI-biology, structural genomics; 2.25A {Sinorhizobium meliloti} Back     alignment and structure
Probab=100.00  E-value=1.4e-88  Score=688.97  Aligned_cols=296  Identities=65%  Similarity=1.120  Sum_probs=278.3

Q ss_pred             ccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCcc
Q 016961           80 DRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDET  159 (380)
Q Consensus        80 ~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~~  159 (380)
                      +||||++||++|||||||||||++++++|.+++++|+|+++++|.++|++||+++|+|++++|+++||+||||++||..+
T Consensus        25 ~~i~~~~~I~vipGDGIGpEI~~~~~~vL~~~~~~i~~~~~~~G~~~~~~tg~~lp~etl~aik~~da~LkGav~tP~~~  104 (427)
T 3us8_A           25 AKIKVANPVVELDGDEMTRIIWQFIKDKLIHPYLDLDLEYYDLGVENRDATDDQVTIDAANAIKKHGVGVKCATITPDEG  104 (427)
T ss_dssp             CCEECCSCEEEEECCHHHHHHHHHHHHHHTTTTEECCEEEEECCHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCHH
T ss_pred             ccccccceEEEEcCCcccHHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHhhCCcCCHHHHHHHHHCCEEEECCccCCCcc
Confidence            69999999999999999999999999999989999999999999999999999999999999999999999999999988


Q ss_pred             hhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCCC
Q 016961          160 RMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDG  239 (380)
Q Consensus       160 ~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~g  239 (380)
                      ++++++++++|+|||++||++||||+|+|||.|+++|++.++|+.||||+||||||+|+|+|+.+.++|+.++.|.+++|
T Consensus       105 ~~~e~~l~~~~~s~n~~LRk~LdlyanvRPv~~~~ip~~~~~~~~DivIvREnteg~Y~g~e~~~~~~~~~~l~~~~~~G  184 (427)
T 3us8_A          105 RVEEFKLKKMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIIVGRHAFGDQYRATDFKFPGKGKLSIKFVGEDG  184 (427)
T ss_dssp             HHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETTS
T ss_pred             ccccccccccccCchHHHHHHhCCeEEecceeccCCCCCCCCCCCCEEEEEeCCCCccCCceeEEecCCcceeeeecccc
Confidence            88888899999999999999999999999986689998888888999999999999999999998888887777777666


Q ss_pred             CCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhhhcccCCC
Q 016961          240 TGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEH  319 (380)
Q Consensus       240 ~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY~~~~~~p  319 (380)
                       .....++++|++.+++++++||+++++||+|+||+||++|+++||+|||+||||.|||+|+++|+|||+++|.++|++|
T Consensus       185 -~~~~~~~~~~~~~~va~~~~~T~~~~eRiar~AFe~A~~r~kkVt~v~KaNIlk~tdglfr~~~~eva~~eYp~~~~~~  263 (427)
T 3us8_A          185 -QTIEHDVYDAPGAGVALAMYNLDESITEFARASFNYGLQRKVPVYLSTKNTILKAYDGRFKDIFQKVFDEEFAAQFKAE  263 (427)
T ss_dssp             -CEEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHHHHTHHHHHHT
T ss_pred             -ccccccccccCCCcEEEEEeeCHHHHHHHHHHHHHHHHHcCCcEEEEECcccchhhhhHHHHHHHHHHHHhCccccCCC
Confidence             4445667778877888999999999999999999999999999999999999999999999999999987898888888


Q ss_pred             CeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961          320 SIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN  377 (380)
Q Consensus       320 ~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~  377 (380)
                      +|+++|+|||+||||||++|++|||||+|||||||||++|+++|||||+ ||||++|+
T Consensus       264 ~I~~~~~~VD~~~mqlv~~P~~FVivt~NlfGDIlSD~aA~l~GslGl~-pSanig~~  320 (427)
T 3us8_A          264 KLWYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDIVAQGFGSLGLM-TSVLMTPD  320 (427)
T ss_dssp             TCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHSCTTSE-EEEEECTT
T ss_pred             CeEEEEEEHHHHHHHHhhCCCCcEEEeCCcCCcHHHHHHHHhcCChhhC-ceeEECCC
Confidence            9999999999999999999999999999999999999999999999999 68999987
>1lwd_A Isocitrate dehydrogenase; tricarboxylic acid cycle, oxidoreductase, NADP; HET: ICT; 1.85A {Sus scrofa} SCOP: c.77.1.1 PDB: 1t0l_A* 1t09_A* 3mas_B* 3map_A* 3mar_A* 3mas_A* 3inm_A* 2cmj_A* 2cmv_A* Back     alignment and structure
>4aoy_A Isocitrate dehydrogenase [NADP]; oxidoreductase, temperature adaptation, thermophilic, psychr NADP+ selectivity, domain movements; 2.35A {Clostridium thermocellum} PDB: 4aou_A Back     alignment and structure
>2uxq_A Isocitrate dehydrogenase native; psychrophilic, cold adaptation, thermal stability, oxidoreductase; HET: SO4 PEG; 1.75A {Desulfotalea psychrophila} PDB: 2uxr_A* Back     alignment and structure
>1zor_A Isocitrate dehydrogenase; wild type enzyme, CIS-proline, thermostable, oxidoreductase; 2.24A {Thermotoga maritima} Back     alignment and structure
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase; HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A* 2qfx_A* 2qfv_A* Back     alignment and structure
>1x0l_A Homoisocitrate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, lysine biosyn; 1.85A {Thermus thermophilus} PDB: 3asj_A* 3ah3_A Back     alignment and structure
>1w0d_A 3-isopropylmalate dehydrogenase; oxidoreductase, leucine biosynthesis, NAD, ST genomics, PSI, protein structure initiative; 1.65A {Mycobacterium tuberculosis} SCOP: c.77.1.1 PDB: 2g4o_A Back     alignment and structure
>2y3z_A 3-isopropylmalate dehydrogenase; oxidoreductase, LEUB, leucine biosynthesis; HET: 2PE; 1.83A {Thermus thermophilus} PDB: 2y40_A 2y41_A* 2y42_A* 1xaa_A 1osi_A 1hex_A 1xab_A 2ztw_A* 1g2u_A 1gc9_A 1osj_A 1ipd_A 1gc8_A 1wal_A 1dpz_A 1dr0_A 1dr8_A 1idm_A 1xac_A 1xad_A Back     alignment and structure
>3flk_A Tartrate dehydrogenase/decarboxylase; cytoplasm, lyase, magnesium, manganese, NAD, oxidoreductase; HET: NAD; 2.00A {Pseudomonas putida} PDB: 3fmx_X* Back     alignment and structure
>3dms_A Isocitrate dehydrogenase [NADP]; struc genomics, seattle structural genomics center for infectious ssgcid, glyoxylate bypass, manganese; 1.65A {Burkholderia pseudomallei} SCOP: c.77.1.1 PDB: 1pb1_A* 1ai3_A* 1ika_A* 1ai2_A* 1p8f_A* 1pb3_A 1sjs_A 3icd_A 3lcb_C* 4aj3_A* 4aja_A* 4icd_A* 5icd_A* 9icd_A* 1bl5_A* 1cw7_A* 1idd_A 1ide_A* 1hj6_A* 7icd_A ... Back     alignment and structure
>1hqs_A Isocitrate dehydrogenase; glyoxylate bypass, bsidh, tricarboxylic acid cycle, oxidoreductase, protein phosphorylation, NADP; HET: CME CIT; 1.55A {Bacillus subtilis} SCOP: c.77.1.1 Back     alignment and structure
>3u1h_A 3-isopropylmalate dehydrogenase; oxidored; 2.80A {Bacillus SP} PDB: 2ayq_A 1v53_A 1v5b_A Back     alignment and structure
>3ty4_A Probable homoisocitrate dehydrogenase; B-hydroxyacid oxidative decarboxylase, amino-acid biosynthes lysine biosynthesis; 1.55A {Schizosaccharomyces pombe} SCOP: c.77.1.0 PDB: 3ty3_A Back     alignment and structure
>3vmk_A 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase; HET: IPM; 1.48A {Shewanella benthica} PDB: 3vml_A* 3vmj_A* 3vl2_A* 3vkz_A* 3vl4_A* 3vl6_A* 3vl7_A* 3vl3_A* Back     alignment and structure
>2e0c_A 409AA long hypothetical NADP-dependent isocitrate dehydrogenase; homedimer, oxidoreductase; 2.00A {Sulfolobus tokodaii str} PDB: 2dht_A 2e5m_A* Back     alignment and structure
>3blx_A Isocitrate dehydrogenase [NAD] subunit 1; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_A 3blv_A* Back     alignment and structure
>2d1c_A Isocitrate dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; HET: NAP CIT; 1.80A {Thermus thermophilus} Back     alignment and structure
>3blx_B Isocitrate dehydrogenase [NAD] subunit 2; TCA cycle, oxidative metabolism, allostery, decarboxylase, allosteric enzyme, magnesium; 2.70A {Saccharomyces cerevisiae} PDB: 3blw_B* 3blv_B Back     alignment and structure
>2iv0_A Isocitrate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, domain swapping, phosphorylation, aromatic cluster, NADP; 2.5A {Archaeoglobus fulgidus} Back     alignment and structure
>2d4v_A Isocitrate dehydrogenase; alpha and beta protein, isocitrate/isopropylmalate dehydrogenase-like fold, oxidoreductase; HET: FLC NAD; 1.90A {Acidithiobacillus thiooxidans} Back     alignment and structure
>1cnz_A IPMDH, IMDH, protein (3-isopropylmalate dehydrogenase); oxidoreductase, leucine biosynthetic pathway, NAD-dependant enzyme; 1.76A {Salmonella typhimurium} SCOP: c.77.1.1 PDB: 1cm7_A Back     alignment and structure
>3r8w_A 3-isopropylmalate dehydrogenase 2, chloroplastic; dimer, isocitrate and isopropylmalate dehydrogenases family, biosynthesis; 2.25A {Arabidopsis thaliana} Back     alignment and structure
>1tyo_A Isocitrate dehydrogenase; enzyme-ethenonadp complex, oxidoreductase; HET: ENP; 2.15A {Aeropyrum pernix} PDB: 1v94_A 1xgv_A 1xkd_A* Back     alignment and structure
>3udu_A 3-isopropylmalate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.85A {Campylobacter jejuni} SCOP: c.77.1.1 PDB: 3udo_A Back     alignment and structure
>1vlc_A 3-isopropylmalate dehydrogenase; TM0556, structural genomics PSI, protein structure initiative, joint center for structu genomics; 1.90A {Thermotoga maritima} SCOP: c.77.1.1 Back     alignment and structure
>1wpw_A 3-isopropylmalate dehydrogenase; oxidoreductase; 2.80A {Sulfolobus tokodaii} SCOP: c.77.1.1 Back     alignment and structure
>1a05_A IPMDH, IMDH, 3-isopropylmalate dehydrogenase; oxidoreductase, decarboxylating dehydrogenase, leucine biosynthesis; HET: IPM; 2.00A {Acidithiobacillus ferrooxidans} SCOP: c.77.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 380
d1lwda_ 413 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 1e-96
d1t0la_ 414 c.77.1.1 (A:) NADP-dependent isocitrate dehydrogen 3e-94
d1hqsa_423 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Baci 6e-19
d1cnza_363 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 8e-17
d1vlca_362 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 3e-15
d1pb1a_416 c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Esch 4e-15
d1wpwa_336 c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPM 1e-07
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Length = 413 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  292 bits (747), Expect = 1e-96
 Identities = 189/291 (64%), Positives = 235/291 (80%), Gaps = 2/291 (0%)

Query: 81  RVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAE 140
           R+KV  P+VEMDGDEMTRIIWQ IK+KLI P++D+ +KY+DLG+ NRD T+D+VT++SA 
Sbjct: 4   RIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSAL 63

Query: 141 ATLKYNVAIKCATITPDETRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVP 200
           AT KY+VA+KCATITPDE R++EF LK MW+SPNGTIRNIL GTVFREPI+C+NIPR+VP
Sbjct: 64  ATQKYSVAVKCATITPDEARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVP 123

Query: 201 GWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPEDGTGPVELDVYNFKGPGIALAMY 260
           GW KPI IGRHA GDQY+ATD V+   G  K+VF P+DG+   + +VYNF   G+ + MY
Sbjct: 124 GWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKDGSSAKQWEVYNFPAGGVGMGMY 183

Query: 261 NVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERWRQKFEEHS 320
           N DESI  FA S    A  KKWPLY+STKNTILK YDGRFKDIFQ+++E+ ++  F+++ 
Sbjct: 184 NTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFEKHYKTDFDKYK 243

Query: 321 IWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQ--GTVSAHSSA 369
           IWYEHRLIDDMVA  +KS GG+VWACKNYDGDVQSD+LAQ  G++   +S 
Sbjct: 244 IWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLMTSV 294
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 414 Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Length = 423 Back     information, alignment and structure
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Length = 363 Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Length = 362 Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Length = 336 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query380
d1lwda_ 413 NADP-dependent isocitrate dehydrogenase {Pig (Sus 100.0
d1cnza_363 3-isopropylmalate dehydrogenase, IPMDH {Salmonella 100.0
d1hqsa_423 Isocitrate dehydrogenase, ICDH {Bacillus subtilis 100.0
d1v53a1356 3-isopropylmalate dehydrogenase, IPMDH {Bacillus c 100.0
d1vlca_362 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga 100.0
d1w0da_337 3-isopropylmalate dehydrogenase, IPMDH {Mycobacter 100.0
d1t0la_ 414 NADP-dependent isocitrate dehydrogenase {Human (Ho 100.0
d1wpwa_336 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus 100.0
d1pb1a_416 Isocitrate dehydrogenase, ICDH {Escherichia coli [ 100.0
d1a05a_357 3-isopropylmalate dehydrogenase, IPMDH {Thiobacill 100.0
d1g2ua_345 3-isopropylmalate dehydrogenase, IPMDH {Thermus th 100.0
d1itwa_ 740 Monomeric isocitrate dehydrogenase {Azotobacter vi 94.01
>d1lwda_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Isocitrate/Isopropylmalate dehydrogenase-like
superfamily: Isocitrate/Isopropylmalate dehydrogenase-like
family: Dimeric isocitrate & isopropylmalate dehydrogenases
domain: NADP-dependent isocitrate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=1.8e-76  Score=596.86  Aligned_cols=297  Identities=64%  Similarity=1.129  Sum_probs=265.4

Q ss_pred             cccccccccEEEEcCCccHHHHHHHHHHHHhcCCCCeEEEEEecchHHHhhcCCCCcHHHHHHHHhcCeeeecCCCCCCc
Q 016961           79 IDRVKVQNPIVEMDGDEMTRIIWQMIKDKLIFPYLDLDIKYYDLGILNRDATDDKVTVESAEATLKYNVAIKCATITPDE  158 (380)
Q Consensus        79 ~~~~~~~~~IvvlpGDgIGpEV~~~~~~~l~~~g~~i~~~~~d~G~~~~d~tG~~lp~etleaik~~da~lkGa~~tP~~  158 (380)
                      ++||+|++|||+|||||||+++|+.+++++..++++|+|+++|+|+++|++||+++|+|++++|+++|++||||++||+.
T Consensus         2 ~~ki~v~~pIv~l~GDeit~~~~~~i~~~l~~~~~di~~~~~d~G~~~~~~tg~~l~~eaiea~k~~~aiLkGa~~tP~~   81 (413)
T d1lwda_           2 DQRIKVAKPVVEMDGDEMTRIIWQFIKEKLILPHVDVQLKYFDLGLPNRDQTNDQVTIDSALATQKYSVAVKCATITPDE   81 (413)
T ss_dssp             CCCEECSSCEEEEECCHHHHHHHHHHHHHTTTTTEECCEEEEECSHHHHHHTTTHHHHHHHHHHHHHSEEEECCCCCCCH
T ss_pred             CCcccccCCEEEecCccHHHHHHHHHHHHHccCCCCceEEEEeCCHHHHHHhCCcCcHHHHHHHHHcCEEEECCcCCCCc
Confidence            57999999999999999999999999999988999999999999999999999999999999999999999999999987


Q ss_pred             chhhhhcccccCCCCchhHhhhcCCeEEeeecccCCCCCCCCCCCCCEEEEeeccCccccccceeecCCCceeeeecCCC
Q 016961          159 TRMKEFGLKSMWRSPNGTIRNILNGTVFREPILCQNIPRIVPGWKKPICIGRHAFGDQYRATDTVIKGPGKLKMVFDPED  238 (380)
Q Consensus       159 ~~~~~~~L~~~~~spn~~LRk~ldlyanvRPi~~~~lp~~~~~~~~divIvREnteG~Y~g~e~~~~~~g~~e~~~~~~~  238 (380)
                      .++.+..+.++|+|||+.||++||||+|+||+++...++...+++.|+||+||||||+|.|.|+.+..+....+.+....
T Consensus        82 ~~~~~~~~~~~~~s~n~~lR~~ldl~an~RP~~~~~~~~~~~~~~~d~VivREnteg~Y~g~e~~~~~~~~~~i~~~~~~  161 (413)
T d1lwda_          82 ARVEEFKLKKMWKSPNGTIRNILGGTVFREPIICKNIPRLVPGWTKPITIGRHAHGDQYKATDFVVDRAGTFKIVFTPKD  161 (413)
T ss_dssp             HHHHHHTCSSCCCCHHHHHHHHHCSEEEEEECCCTTSCCSSTTCCSCEEEEEECSSGGGGCEEEEECSSEEEEEEEEETT
T ss_pred             cccccccccccccchhhhHHHhcCCceEEecccccCCCCcCCCCCCCeEEeeccccceeeccceeccCcccceeEEeccc
Confidence            76766667788999999999999999999998654444455567889999999999999999998876655555555555


Q ss_pred             CCCcceeeecccCCcceeeecccCHHHHHHHHHHHHHHHhcCCCCEEEEeCCCcccccchhHHHHHHHHHHHhh-hcccC
Q 016961          239 GTGPVELDVYNFKGPGIALAMYNVDESIRAFAESSMSLAFSKKWPLYLSTKNTILKKYDGRFKDIFQQVYEERW-RQKFE  317 (380)
Q Consensus       239 g~~~~~~~v~~~~~~~~~~~~~~Tr~~ieRIar~AFe~A~~rk~~Vt~v~KaNVLk~tdglf~~i~~eVa~~eY-~~~~~  317 (380)
                      |......+.+.+.+..++.++++|+.+++||+|+||++|++|+++||++||+|||+.++|+|+++|+||++ +| +.+++
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ria~~af~~a~~~~~~vt~v~K~nvl~~~~glf~~~~~eva~-~~p~~~~~  240 (413)
T d1lwda_         162 GSSAKQWEVYNFPAGGVGMGMYNTDESISGFAHSCFQYAIQKKWPLYMSTKNTILKAYDGRFKDIFQEIFE-KHYKTDFD  240 (413)
T ss_dssp             CCCCEEEEEEEESSCEEEEEEEEEHHHHHHHHHHHHHHHHHHTCCEEEEECTTTSTTHHHHHHHHHHHHHH-HHTHHHHH
T ss_pred             cccccccccccccccccceeeccccchhhHHHHHHHHHHHhcCcceEEecccceeeehhHHHHHHHHHHHH-Hhcccccc
Confidence            55555666667778889999999999999999999999999999999999999999999999999999998 55 33333


Q ss_pred             CCCeeEehhhHHHHHHHHHHCCCCcEEEeCCchhhHHHhhhhhccCCccccCCCCCCCCC
Q 016961          318 EHSIWYEHRLIDDMVAYAIKSEGGYVWACKNYDGDVQSDLLAQGTVSAHSSAFEVSRAPN  377 (380)
Q Consensus       318 ~p~I~~e~~lIDa~a~~LVk~P~~FViVt~NLfGDILSDlaA~l~GsLGlap~~~~~~p~  377 (380)
                      ..+|.++|+++|+|+|+|+++|+.|||||+|||||||||++|+++|||||+ ||+|++|+
T Consensus       241 ~~~I~~~~~~vd~~~~~lv~~p~~~Vivt~NlfGDIlSDlaa~l~GglGl~-pSanig~~  299 (413)
T d1lwda_         241 KYKIWYEHRLIDDMVAQVLKSSGGFVWACKNYDGDVQSDILAQGFGSLGLM-TSVLVCPD  299 (413)
T ss_dssp             HTTCCEEEEEHHHHHHHHHHSCCCEEEEECHHHHHHHHHHHHHHHTCTTSE-EEEEECTT
T ss_pred             ccEEEEehhhhhhhhhhhcCCCCCeEEEEccccchhHhhHHHHhcCCCCCC-cccccCCC
Confidence            348999999999999999999986699999999999999999999999998 78899987
>d1cnza_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1hqsa_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1v53a1 c.77.1.1 (A:1-356) 3-isopropylmalate dehydrogenase, IPMDH {Bacillus coagulans [TaxId: 1398]} Back     information, alignment and structure
>d1vlca_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1w0da_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1t0la_ c.77.1.1 (A:) NADP-dependent isocitrate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wpwa_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1pb1a_ c.77.1.1 (A:) Isocitrate dehydrogenase, ICDH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a05a_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1g2ua_ c.77.1.1 (A:) 3-isopropylmalate dehydrogenase, IPMDH {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure