Citrus Sinensis ID: 016969

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MSVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Secondary Structure (PSIPRED)
ccEEEcccccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEEEEEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccccccccEEEEEEHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEHHHHHHHHHHHcccccEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msvtipfyfylpdkfdashgfsgktnawACSFFVHVGLYGTAIAYTVTSAISMRAIQKsncyhregheaaceysDTYYMLIFGAVQLILsqapdfhniQSLSVIAAVMSFAYSFIGFGLGVAKVIGngfvmgsfsgvstTTSIEKMWLVAQALGDIAFAYPYSLILIEIQdtlkspppanqtmkkastmSIITTTIFYLFCggfgyaafgdntpgnlltgfgfyepywlidLANAFIVIHLVGgyqvysqpiFAHFEKWIcekfpengflnnefflkpplmpafrwnplrlcfRTVYVVSVTAIAMSFPYFNQVLGVIggvifwpltiyfpVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Flexible Loop (DISEMBL)
MSVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Low Complexity Region (SEG)
MSVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered region (IsUnstruct)
**VTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT****************MSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII*****
Disordered Region (DISOPRED)
***TIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKL*
Disordered Region (DISEMBL)
MSVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Disordered Region (DISPRO)
*SVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA*L*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSVTIPFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9FF99	467	Probable amino acid perme	yes	no	0.936	0.760	0.562	1e-111
Q38967	493	Amino acid permease 2 OS=	no	no	0.947	0.728	0.505	1e-110
Q39134	476	Amino acid permease 3 OS=	no	no	0.915	0.728	0.515	1e-103
O80592	475	Amino acid permease 8 OS=	no	no	0.941	0.751	0.505	1e-103
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.944	0.745	0.510	1e-102
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.947	0.770	0.480	1e-101
Q42400	485	Amino acid permease 1 OS=	no	no	0.952	0.744	0.475	1e-100
P92934	481	Amino acid permease 6 OS=	no	no	0.915	0.721	0.497	8e-96
Q9FKS8	446	Lysine histidine transpor	no	no	0.796	0.677	0.295	6e-30
Q9LRB5	441	Lysine histidine transpor	no	no	0.794	0.682	0.298	2e-28

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  402 bits (1032), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 202/359 (56%), Positives = 260/359 (72%), Gaps = 4/359 (1%)

Query: 23  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYML 80
           GK N   C   V++ L+G  IAYT+  A   RAI KSNCYHR GH A C Y D   Y+M+
Sbjct: 107 GKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYFMV 166

Query: 81  IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTT 140
           +FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+   
Sbjct: 167 LFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIPAE 226

Query: 141 TSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF 200
              EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+  
Sbjct: 227 NRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFC 286

Query: 201 CGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWI 260
           CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+ +
Sbjct: 287 CGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSL 346

Query: 261 CEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 318
            +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLGV+
Sbjct: 347 TKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVV 406

Query: 319 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 377
           G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ AK
Sbjct: 407 GALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGAK 465

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  397 bits (1020), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 183/362 (50%), Positives = 253/362 (69%), Gaps = 3/362 (0%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA     G      C    ++ L+G AI YT+ ++ISM AI++SNC+H+ G +  C  S 
Sbjct: 119 DAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSS 178

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
             YM++FG  +++LSQ PDF  I  +S++AAVMSF YS IG  LG+ +V  NG   GS +
Sbjct: 179 NPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLT 238

Query: 136 GVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 193
           G+S  T T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +SI  
Sbjct: 239 GISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAV 298

Query: 194 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 253
           TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++QPIF
Sbjct: 299 TTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIF 358

Query: 254 AHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
           A  EK + E++P+N FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  P+FN
Sbjct: 359 AFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFN 418

Query: 313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
            V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VGSI G
Sbjct: 419 DVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAG 478

Query: 373 II 374
           ++
Sbjct: 479 VM 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 180/349 (51%), Positives = 237/349 (67%), Gaps = 2/349 (0%)

Query: 15  FDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYS 74
            DA     G      C    ++ ++G AI YT+ SAISM AI++SNC+H+ G +  C  +
Sbjct: 102 MDAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMN 161

Query: 75  DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF 134
              YM+ FG VQ++ SQ PDF  +  LS++AAVMSF YS  G  LG+A+V+ NG V GS 
Sbjct: 162 SNPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSL 221

Query: 135 SGVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSII 192
           +G+S    T  +K+W   QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +S+ 
Sbjct: 222 TGISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVS 281

Query: 193 TTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 252
            TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY QP+
Sbjct: 282 VTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPL 341

Query: 253 FAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
           FA  EK    +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P+FN
Sbjct: 342 FAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFN 401

Query: 313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIV 361
            V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L+VFS  C +V
Sbjct: 402 DVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVV 450

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  375 bits (963), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 183/362 (50%), Positives = 245/362 (67%), Gaps = 5/362 (1%)

Query: 19  HGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYY 78
             + G      C    +V L G  I YT+T++IS+ AI KSNCYH +GH+A C  S+  Y
Sbjct: 104 RSYLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPY 163

Query: 79  MLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKV----IGNGFVMGSF 134
           M  FG VQ+ILSQ P+FH +  LS+IAAVMSF+Y+ IG GL +A V    IG   + G+ 
Sbjct: 164 MAAFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTV 223

Query: 135 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITT 194
            GV  T S EK+W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+AS + + TT
Sbjct: 224 IGVDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTT 282

Query: 195 TIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 254
           T+FY+ CG  GYAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQVY+QP F 
Sbjct: 283 TVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQ 342

Query: 255 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 314
             E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+FN +
Sbjct: 343 FVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAI 402

Query: 315 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 374
           LG++G   FWPLT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    VGSI G+I
Sbjct: 403 LGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLI 462

Query: 375 SA 376
           ++
Sbjct: 463 NS 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  370 bits (950), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 189/370 (51%), Positives = 241/370 (65%), Gaps = 12/370 (3%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA H   G      C    +V L+GTAI YT+ SAIS+ AIQ+++C    G    C  + 
Sbjct: 101 DAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNG 160

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
             YM+ FG VQ+I SQ PDF  +  LS++AAVMSFAYS IG GLGV+KV+ N  + GS +
Sbjct: 161 NVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLT 220

Query: 136 GVS--------TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 187
           GV+        T TS +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM+KA+
Sbjct: 221 GVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKAT 280

Query: 188 TMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 247
            +S+  TT+FY+ CG  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG YQV
Sbjct: 281 FVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQV 340

Query: 248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIA 305
           Y QP+FA  EK    +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+
Sbjct: 341 YCQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLIS 398

Query: 306 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG 365
           M  P+FN V+G++G + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  VS   
Sbjct: 399 MLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAA 458

Query: 366 LVGSIQGIIS 375
             GS+ GI+S
Sbjct: 459 AAGSVIGIVS 468

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/362 (48%), Positives = 242/362 (66%), Gaps = 3/362 (0%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA     G      C    ++ L+G  + YT+ ++ISM AI++SNC+H  G +  C  S 
Sbjct: 92  DAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSS 151

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
             YM++FG  +++LSQ  DF  I  LS++AA+MSF YS IG  LG+ +V  NG V GS +
Sbjct: 152 NPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLT 211

Query: 136 GVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 193
           G+S    T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +SI  
Sbjct: 212 GISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAV 271

Query: 194 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 253
           TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++QPIF
Sbjct: 272 TTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIF 331

Query: 254 AHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
           A  EK    +FP++  +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  P+FN
Sbjct: 332 AFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFN 391

Query: 313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
            V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VGSI G
Sbjct: 392 DVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAG 451

Query: 373 II 374
           ++
Sbjct: 452 VM 453

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  365 bits (938), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 173/364 (47%), Positives = 238/364 (65%), Gaps = 3/364 (0%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           D    + G      C    +  L G  + YT+T++IS+ A+ KSNC+H +GH A C  S+
Sbjct: 110 DVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISN 169

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
             YM +FG +Q+ILSQ P+FH +  LS++AAVMSF Y+ IG GL +A V G      S +
Sbjct: 170 YPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMT 229

Query: 136 GVST---TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSII 192
           G +     T+ +K+W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + + 
Sbjct: 230 GTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVS 289

Query: 193 TTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 252
           TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QPI
Sbjct: 290 TTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPI 349

Query: 253 FAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
           F   EK     +P+N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+FN
Sbjct: 350 FQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFN 409

Query: 313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
            +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI G
Sbjct: 410 AILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAG 469

Query: 373 IISA 376
           +IS+
Sbjct: 470 LISS 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  350 bits (899), Expect = 8e-96,   Method: Compositional matrix adjust.
 Identities = 175/352 (49%), Positives = 237/352 (67%), Gaps = 5/352 (1%)

Query: 30  CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL 89
           C    +  L G  I YT+T++ISM A+++SNC+H+ GH   C  S+T +M+IF  +Q+IL
Sbjct: 120 CGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMIIFAIIQIIL 179

Query: 90  SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVSTTTSI---EK 145
           SQ P+FHN+  LS++AAVMSF Y+ IG GL +AK  G G  V  + +GV+    +   EK
Sbjct: 180 SQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTVGIDVSGAEK 239

Query: 146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTTIFYLFCGGF 204
           +W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT FY+ CG  
Sbjct: 240 IWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTTFFYMLCGCV 299

Query: 205 GYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKF 264
           GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF   E    +++
Sbjct: 300 GYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQFVESQSAKRW 359

Query: 265 PENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFW 324
           P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  LG+IG   FW
Sbjct: 360 PDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFLGLIGAASFW 419

Query: 325 PLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 376
           PLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I +
Sbjct: 420 PLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQS 471

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/348 (29%), Positives = 163/348 (46%), Gaps = 46/348 (13%)

Query: 40  GTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD----TYYMLIFGAVQLILSQAPDF 95
           G  I Y VT   S++            HE  C+       TY+++IF +V  +LS  P+F
Sbjct: 129 GVCIVYMVTGGKSLKKF----------HELVCDDCKPIKLTYFIMIFASVHFVLSHLPNF 178

Query: 96  HNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGD 155
           ++I  +S+ AAVMS +YS I +    +K +      G +   +T  ++   +     LGD
Sbjct: 179 NSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYG-YKAKTTAGTVFNFF---SGLGD 234

Query: 156 IAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT 213
           +AFAY    +++EIQ T+ S P  P+   M +   ++ I   + Y      GY  FG+  
Sbjct: 235 VAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALVGYYIFGNGV 294

Query: 214 PGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNE 273
             N+L      +P WLI  AN F+VIH++G YQ+Y+ P+F   E  + +K      LN  
Sbjct: 295 EDNILMSLK--KPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKK------LN-- 344

Query: 274 FFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFP-- 331
              +P          LR   R  YV +   + M+FP+F  +L   GG  F P T + P  
Sbjct: 345 --FRPT-------TTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCV 395

Query: 332 --VEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAK 377
             + +Y  +    +W   WV + VF     ++S  G + +I  +I AK
Sbjct: 396 IWLAIYKPKKYSLSWWANWVCI-VFGLFLMVLSPIGGLRTI--VIQAK 440

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/338 (29%), Positives = 158/338 (46%), Gaps = 37/338 (10%)

Query: 18  SHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY 77
            H F  K   W       +   G  I Y VT   S++ + +  C          E   T+
Sbjct: 102 QHAFGEKLGLWIVVPQQLIVEVGVDIVYMVTGGASLKKVHQLVC------PDCKEIRTTF 155

Query: 78  YMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGV 137
           +++IF +V  ++S  P+F++I  +S+ AAVMS  YS I +   V K    G         
Sbjct: 156 WIMIFASVHFVISHLPNFNSISIISLAAAVMSLTYSTIAWAASVHK----GVHPDVDYSP 211

Query: 138 STTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTT 195
             +T + K++    ALGD+AFAY    +++EIQ T+ S P  P+   M +   ++ I   
Sbjct: 212 RASTDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVA 271

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
           I Y      GY  FG++   N+L      +P WLI +AN F+VIH++G YQ+++ P+F  
Sbjct: 272 ICYFPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDM 329

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            E  + +K   N              P+F+   LR   R++YV     +A+  P+F  +L
Sbjct: 330 LETVLVKKMNFN--------------PSFK---LRFITRSLYVAFTMIVAICVPFFGGLL 372

Query: 316 GVIGGVIFWPLTIYFPVEMYF-----KQMNIEAWTRKW 348
           G  GG  F P T Y P  M+      K+  + +WT  W
Sbjct: 373 GFFGGFAFAPTTYYLPCIMWLVLKKPKRFGL-SWTANW 409

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
255586130	461	amino acid transporter, putative [Ricinu	0.941	0.774	0.697	1e-151
225462048	472	PREDICTED: probable amino acid permease	0.963	0.773	0.668	1e-149
224122284	458	amino acid permease [Populus trichocarpa	0.968	0.801	0.646	1e-144
224146569	431	amino acid permease [Populus trichocarpa	0.949	0.835	0.658	1e-143
359494348	623	PREDICTED: probable amino acid permease	0.960	0.584	0.640	1e-142
296089993	458	unnamed protein product [Vitis vinifera]	0.960	0.794	0.640	1e-141
255586132	456	amino acid transporter, putative [Ricinu	0.955	0.793	0.643	1e-137
357495243	467	Amino acid permease [Medicago truncatula	0.960	0.779	0.634	1e-136
356569591	447	PREDICTED: probable amino acid permease	0.963	0.816	0.646	1e-135
356501671	461	PREDICTED: probable amino acid permease	0.960	0.789	0.598	1e-134

>gi|255586130|ref|XP_002533727.1| amino acid transporter, putative [Ricinus communis] gi|223526365|gb|EEF28658.1| amino acid transporter, putative [Ricinus communis]

 Score =  540 bits (1391), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/357 (69%), Positives = 302/357 (84%)

Query: 23  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 82
           GK  +W C  FV + LYGT IAYT+TSAISMRAI+KSNCYH+EGH AACE+SDT YMLIF
Sbjct: 105 GKKASWICGIFVELSLYGTGIAYTITSAISMRAIRKSNCYHKEGHSAACEFSDTSYMLIF 164

Query: 83  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS 142
           GA Q+I+SQ PDFHN++ LS++AAVMSF YS IGFGLG+A+VI NG+ MGS +GVS +++
Sbjct: 165 GAFQIIVSQIPDFHNMEWLSILAAVMSFTYSSIGFGLGLAQVIENGYAMGSITGVSASSA 224

Query: 143 IEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCG 202
            +K+W ++QALGDIAFAYPYSLIL+EIQDTLKSPP  N+TM+KAST++++ TT FYL CG
Sbjct: 225 ADKVWNISQALGDIAFAYPYSLILLEIQDTLKSPPTENETMRKASTIALVVTTFFYLCCG 284

Query: 203 GFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICE 262
            FGYAAFG++TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQVYSQP+FA  EKW  E
Sbjct: 285 AFGYAAFGEDTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQVYSQPVFATIEKWFAE 344

Query: 263 KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVI 322
           + P + F+NN + LK PL+PAF  N  R+CFRT+YVVS TAI+M FPYFNQV+G++G + 
Sbjct: 345 RHPASRFINNNYSLKLPLLPAFGLNAFRICFRTLYVVSTTAISMIFPYFNQVIGLLGALN 404

Query: 323 FWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS 379
           FWPLTIYFPVEMYF+Q NIEAWT KW+MLR FS V F+V+   LVGS++G+ISAKLS
Sbjct: 405 FWPLTIYFPVEMYFRQRNIEAWTIKWIMLRAFSIVVFLVAAIALVGSVEGVISAKLS 461

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462048|ref|XP_002268936.1| PREDICTED: probable amino acid permease 7 [Vitis vinifera] gi|296089992|emb|CBI39811.3| unnamed protein product [Vitis vinifera]

 Score =  535 bits (1378), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 244/365 (66%), Positives = 298/365 (81%)

Query: 15  FDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYS 74
            +A H   G  +AW C+  V++ LYG  IAYT+TSAISMRAI KSNCYHREGH+AAC Y 
Sbjct: 108 LEAVHINLGSRSAWVCALVVYISLYGIGIAYTITSAISMRAINKSNCYHREGHDAACAYG 167

Query: 75  DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF 134
           D  +ML+FGA+Q++ SQ PDFHNI+ LSV+AAVMSF YSFIG GLG+AK IG+G + GS 
Sbjct: 168 DNSFMLVFGAIQIVTSQIPDFHNIEWLSVVAAVMSFCYSFIGLGLGLAKTIGDGKIKGSI 227

Query: 135 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITT 194
            G+ST+T  EK+WL++QALGDIAFAYPYSLI IEIQDTLKSPPP ++TMKKAST++I  T
Sbjct: 228 EGISTSTVAEKVWLISQALGDIAFAYPYSLISIEIQDTLKSPPPESETMKKASTLAITVT 287

Query: 195 TIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 254
           T+FYLFCGGFGYAAFGD+TPGNLLTGFGFYEPYWL+D ANA +V HLVGGYQ+Y+QP+F 
Sbjct: 288 TLFYLFCGGFGYAAFGDDTPGNLLTGFGFYEPYWLVDFANACVVAHLVGGYQIYTQPLFG 347

Query: 255 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 314
             ++W  +KFP +GF+NN++  K PL+PAFR N  RLCFRT YV + T IAM FPYFNQV
Sbjct: 348 MVDRWSAQKFPNSGFVNNDYVFKLPLLPAFRVNLFRLCFRTAYVGTTTGIAMIFPYFNQV 407

Query: 315 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 374
           LGVIG + FWPL IYFPVEMYF Q  I  WTR W++L++FS+VC +V+ F  VGS++G+I
Sbjct: 408 LGVIGAMNFWPLAIYFPVEMYFVQRKIGVWTRMWLLLQIFSFVCLVVTVFAFVGSVEGLI 467

Query: 375 SAKLS 379
           +AKLS
Sbjct: 468 TAKLS 472

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122284|ref|XP_002330585.1| amino acid permease [Populus trichocarpa] gi|222872143|gb|EEF09274.1| amino acid permease [Populus trichocarpa]

 Score =  517 bits (1332), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/376 (64%), Positives = 293/376 (77%), Gaps = 9/376 (2%)

Query: 12  PDKFDASHGFS---------GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCY 62
           PD    +  +S         GKT  W C    +V +YGT IAY +T++ SMRAIQ+SNCY
Sbjct: 82  PDPITGTRNYSYMHAVRVNLGKTQTWFCGLLQYVSMYGTGIAYVITTSTSMRAIQRSNCY 141

Query: 63  HREGHEAACEYSDTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVA 122
           HREGH+A+CEY D  YML+FGAVQ+++SQ PDFHN++ LSVIAA+MSF YSFIGFGLGVA
Sbjct: 142 HREGHKASCEYGDAIYMLLFGAVQILVSQIPDFHNMEWLSVIAAIMSFTYSFIGFGLGVA 201

Query: 123 KVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQT 182
           +VI NG + GS +GVS  T+  K+WL  +ALGDIAFAYPYS+IL+EIQDTLKSPPP N+T
Sbjct: 202 QVIENGTIKGSIAGVSAATTANKLWLAFEALGDIAFAYPYSIILLEIQDTLKSPPPENKT 261

Query: 183 MKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLV 242
           MKKAS +SI  TT FYL CG FGYAAFG+NTPGNLLTGFGF+EPYWL+DLANA +V+HLV
Sbjct: 262 MKKASMISIFITTFFYLCCGCFGYAAFGNNTPGNLLTGFGFFEPYWLVDLANACVVLHLV 321

Query: 243 GGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVT 302
           GGYQ+YSQP+FA  E W   KFP +GF+NN    K PL+     N  RLCFRTVYV S T
Sbjct: 322 GGYQIYSQPVFAFVEGWFSRKFPSSGFVNNFHSFKLPLIRPLHINLFRLCFRTVYVASTT 381

Query: 303 AIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVS 362
           A+AM+FPYFNQVLGV+G + FWPL IYFPVEMYF Q  I AWTRKW++LR FS+ C +++
Sbjct: 382 AVAMAFPYFNQVLGVLGALNFWPLAIYFPVEMYFVQKKIGAWTRKWIVLRTFSFACLLIT 441

Query: 363 TFGLVGSIQGIISAKL 378
             GL+GSI+G+ISAKL
Sbjct: 442 IAGLLGSIEGLISAKL 457

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146569|ref|XP_002336318.1| amino acid permease [Populus trichocarpa] gi|222834652|gb|EEE73115.1| amino acid permease [Populus trichocarpa]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 237/360 (65%), Positives = 287/360 (79%)

Query: 15  FDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYS 74
            +A H   GK NA  C  F  +G YGT IAYT+T+A SMRAIQKSNCYH+EGHEA CEY 
Sbjct: 72  LEAVHETLGKRNALVCGVFAQIGFYGTGIAYTITTATSMRAIQKSNCYHKEGHEATCEYG 131

Query: 75  DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF 134
            + YML+FG VQ++LSQ PDFHN+Q LS++AA+MS +Y+ IGF LG A+VI NGFV G  
Sbjct: 132 GSLYMLLFGVVQVVLSQVPDFHNLQWLSIVAAIMSVSYASIGFALGFAQVIANGFVKGGI 191

Query: 135 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITT 194
           +GVS   + +K+W V+QALGDIAFAYPY LIL+EIQDTLKSPP  +++MKKAS ++++ T
Sbjct: 192 AGVSAYRAADKVWNVSQALGDIAFAYPYPLILLEIQDTLKSPPSESKSMKKASIIAVVVT 251

Query: 195 TIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 254
           T FYL CGGFGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HL GGYQVYSQP+FA
Sbjct: 252 TFFYLCCGGFGYAAFGEKTPGNLLTGFGFYEPYWLIDFANACIVLHLAGGYQVYSQPLFA 311

Query: 255 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 314
             E WI EK+PEN FLN     K P +P F+ N LRLCFRT+YVVS T IA+ FPYFNQV
Sbjct: 312 VIENWIAEKYPENRFLNKNLTCKFPRLPGFQLNLLRLCFRTIYVVSTTVIAVMFPYFNQV 371

Query: 315 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 374
           +G++GG  FWPL +YFPVEMYFKQ NIEAWT KW+MLR FS +CF+V+ F L+GS++G++
Sbjct: 372 IGLLGGFGFWPLAVYFPVEMYFKQKNIEAWTIKWIMLRAFSVICFLVTAFALIGSVEGLM 431

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494348|ref|XP_002268981.2| PREDICTED: probable amino acid permease 7-like [Vitis vinifera]

 Score =  509 bits (1311), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 233/364 (64%), Positives = 287/364 (78%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA     G    W C    +V LYGT  AY +T+A  MRAIQ+SNCYH+EGH A+C Y D
Sbjct: 260 DAVRVNLGGKRQWFCGLLQYVNLYGTGTAYVITTATCMRAIQRSNCYHKEGHNASCAYGD 319

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
           T+YML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ IG GLG AKV+ NG + GS  
Sbjct: 320 TFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYASIGLGLGFAKVVENGMIKGSIE 379

Query: 136 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 195
           G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I+ TT
Sbjct: 380 GISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAILITT 439

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
            FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP+FA 
Sbjct: 440 FFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQPVFAF 499

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYFNQVL
Sbjct: 500 VERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYFNQVL 559

Query: 316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
           G++G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++GIIS
Sbjct: 560 GLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVEGIIS 619

Query: 376 AKLS 379
           AK+S
Sbjct: 620 AKVS 623

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089993|emb|CBI39812.3| unnamed protein product [Vitis vinifera]

 Score =  509 bits (1310), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 233/364 (64%), Positives = 287/364 (78%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA     G    W C    +V LYGT  AY +T+A  MRAIQ+SNCYH+EGH A+C Y D
Sbjct: 95  DAVRVNLGGKRQWFCGLLQYVNLYGTGTAYVITTATCMRAIQRSNCYHKEGHNASCAYGD 154

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
           T+YML+FG +Q+++SQ PDFHN++ LS++AA+MSF+Y+ IG GLG AKV+ NG + GS  
Sbjct: 155 TFYMLLFGVIQIVMSQIPDFHNMEWLSIVAAIMSFSYASIGLGLGFAKVVENGMIKGSIE 214

Query: 136 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 195
           G+S + + +K+WLV QALGDIAFAYPYSLIL+EIQDTLK+PPP N+TMKKAS  +I+ TT
Sbjct: 215 GISASNTADKIWLVFQALGDIAFAYPYSLILLEIQDTLKAPPPENKTMKKASMSAILITT 274

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
            FYL CG FGYAAFGD+TPGNLLTGFGF+EPYWLID ANA I++HLVGGYQVYSQP+FA 
Sbjct: 275 FFYLCCGCFGYAAFGDDTPGNLLTGFGFFEPYWLIDFANACIILHLVGGYQVYSQPVFAF 334

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            E+W+  KFP +GF+N  + LK PL+PAF+ N LR+CFRT YV+S T IAM FPYFNQVL
Sbjct: 335 VERWVTRKFPNSGFVNKFYTLKLPLLPAFQMNLLRICFRTTYVISTTGIAMIFPYFNQVL 394

Query: 316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
           G++G + FWPL IYFPVEMY  Q  I AWTR W++LR FS VC +VS   LVGS++GIIS
Sbjct: 395 GLLGALNFWPLAIYFPVEMYLVQKKIGAWTRTWIILRTFSLVCLLVSILTLVGSVEGIIS 454

Query: 376 AKLS 379
           AK+S
Sbjct: 455 AKVS 458

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586132|ref|XP_002533728.1| amino acid transporter, putative [Ricinus communis] gi|223526366|gb|EEF28659.1| amino acid transporter, putative [Ricinus communis]

 Score =  493 bits (1270), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 233/362 (64%), Positives = 279/362 (77%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA     GKT  W C    +  ++GT IAY +T+A SM+AIQKSNCYHREGH A C Y D
Sbjct: 93  DAVRVNLGKTQTWFCGLLQYFSMFGTGIAYVITTATSMKAIQKSNCYHREGHRAPCSYED 152

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
           TY+ML+FG VQ+++SQ P+FHN++ LSVIAA+MSF YSFIGFGLG AKVI NG + GS +
Sbjct: 153 TYFMLLFGFVQIVVSQIPNFHNMEWLSVIAAIMSFTYSFIGFGLGFAKVIENGRIKGSIT 212

Query: 136 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 195
           GV      +K+WL  +ALGDIAFAYPYSLIL+EIQDTLKS PP N+TMKK S ++I  TT
Sbjct: 213 GVPAANLADKLWLAFEALGDIAFAYPYSLILLEIQDTLKSSPPENKTMKKGSMIAIFVTT 272

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
            FYL CG FGYAAFG+NTPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQP+FA 
Sbjct: 273 FFYLCCGCFGYAAFGNNTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPVFAF 332

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            E W   K+P + F+N  + +K P  P  + N LRLC RT YV + TAIAM+FPYFNQ+L
Sbjct: 333 VEGWFGNKYPRSRFVNKFYTMKLPFSPPLQVNILRLCSRTAYVAATTAIAMTFPYFNQIL 392

Query: 316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
           GV+G + FWPL IYFPVEMYF Q  I  WTRKW++LR FS+VC +VS  GL+GSI+G+IS
Sbjct: 393 GVLGALNFWPLAIYFPVEMYFVQKKIGPWTRKWIVLRTFSFVCLLVSIVGLIGSIEGLIS 452

Query: 376 AK 377
           AK
Sbjct: 453 AK 454

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357495243|ref|XP_003617910.1| Amino acid permease [Medicago truncatula] gi|355519245|gb|AET00869.1| Amino acid permease [Medicago truncatula]

 Score =  492 bits (1266), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 231/364 (63%), Positives = 281/364 (77%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA   + G      C   VHV LYGT  AY +TSA S+RAI KSNCYH+EGHEA C+Y D
Sbjct: 104 DAVKLYLGAIRGKVCGVLVHVSLYGTTCAYVITSATSIRAILKSNCYHKEGHEAHCKYGD 163

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
           T YM++FG VQ+I+S  PD HN+  LSV+AAVMSF YS IG GLGV  VI NG +MGS +
Sbjct: 164 TIYMILFGLVQVIMSFIPDLHNMALLSVVAAVMSFTYSSIGLGLGVTNVIENGRIMGSVA 223

Query: 136 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 195
           GV  +   +K+WLV QALGDIAFAYPY+ IL+EIQDTL+SPP  N+TMKKAS ++I+ TT
Sbjct: 224 GVPASNIADKLWLVFQALGDIAFAYPYTTILLEIQDTLESPPAENKTMKKASMIAILITT 283

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
            FYL C  FGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQP +  
Sbjct: 284 FFYLCCACFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPTYTA 343

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            ++W   K+P +GF+NN + LK PL+PAF+ N LR+CFRT YV+S T +A+ FPYFN+VL
Sbjct: 344 ADRWCSRKYPNSGFVNNFYQLKLPLLPAFQLNMLRICFRTAYVISTTGLAIMFPYFNEVL 403

Query: 316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
           GV+G + FWPLTIYFPVEMYF Q  IEAW+ KW++LR FS+VC +V+   LVGS++GIIS
Sbjct: 404 GVLGALGFWPLTIYFPVEMYFVQNKIEAWSTKWIVLRTFSFVCLLVTVVSLVGSLEGIIS 463

Query: 376 AKLS 379
            KLS
Sbjct: 464 EKLS 467

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569591|ref|XP_003552982.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  489 bits (1258), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 236/365 (64%), Positives = 287/365 (78%)

Query: 15  FDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYS 74
            DA +   G+ N+  C+ FV+V LYG  IAY +T+AISMRAIQKSNC    G+E  C + 
Sbjct: 83  LDAVNLHKGEGNSRFCAVFVNVSLYGFGIAYVITAAISMRAIQKSNCSQDNGNEVTCGFG 142

Query: 75  DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF 134
           D Y+MLIFGA+Q++LSQ P+FHNIQ LS++AA+MSFAY+FIG GL V +V  NG   GS 
Sbjct: 143 DGYFMLIFGAMQVLLSQIPNFHNIQWLSILAAIMSFAYAFIGMGLSVGQVTENGHAEGSI 202

Query: 135 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITT 194
            G+ T++ IEK+WLVAQALGDIAF+YP+S+ILIEIQDTLKSPPP N TMK+AST+S+I T
Sbjct: 203 EGIPTSSGIEKLWLVAQALGDIAFSYPFSVILIEIQDTLKSPPPENVTMKRASTISVIVT 262

Query: 195 TIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFA 254
           T FYL CG FGYAAFG++TPGNLLTGF  Y+ +WL+D ANA IVIHLVG YQVYSQP+FA
Sbjct: 263 TFFYLCCGCFGYAAFGNDTPGNLLTGFALYKKHWLVDFANACIVIHLVGAYQVYSQPLFA 322

Query: 255 HFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQV 314
           + E W+  KFP++ F+N  + LK PL+PAF  N LRL FRT YV S T IAM FPYFNQ+
Sbjct: 323 NVENWLRFKFPDSEFVNRTYSLKLPLLPAFPLNFLRLTFRTAYVASTTGIAMIFPYFNQI 382

Query: 315 LGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII 374
           LGV+ G+I++PL+IYFPVEMY    NIEAWT KWVMLR FS V F+V  F LVGSI+GI+
Sbjct: 383 LGVLAGIIYYPLSIYFPVEMYLSLGNIEAWTAKWVMLRTFSIVGFLVGLFTLVGSIEGIV 442

Query: 375 SAKLS 379
           SAKLS
Sbjct: 443 SAKLS 447

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356501671|ref|XP_003519647.1| PREDICTED: probable amino acid permease 7-like [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 218/364 (59%), Positives = 282/364 (77%)

Query: 16  DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
           DA   + G    W      ++ LYG + AY +T+A  +RAI KSNCYH+EGH+A C+Y D
Sbjct: 98  DAVRVYLGNKRTWLAGSLQYLSLYGVSTAYVITTATCLRAILKSNCYHKEGHQAPCKYGD 157

Query: 76  TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
             YM++FG VQ+I+S  PD HN+  +S++AA+MSF YS IG GLG+  VI NG +MGS +
Sbjct: 158 AVYMMLFGLVQIIMSFIPDLHNMAWVSIVAAIMSFTYSSIGLGLGITTVIENGRIMGSLT 217

Query: 136 GVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTT 195
           GV  +   +K+WLV Q +GDIAFAYPY++IL+EIQDTL+SPPP N+TMKKAS ++I+ TT
Sbjct: 218 GVPASNIADKLWLVFQGIGDIAFAYPYTVILLEIQDTLESPPPENKTMKKASMIAILITT 277

Query: 196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
            FYL CG FGYAAFG+ TPGNLLTGFGFYEPYWLID ANA IV+HLVGGYQ+YSQPI+  
Sbjct: 278 FFYLCCGCFGYAAFGNQTPGNLLTGFGFYEPYWLIDFANACIVLHLVGGYQIYSQPIYGA 337

Query: 256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
            ++W  +++P +GF+NN + LK P +PAF+ N  R+CFRT YVVS T +A+ FPYFNQV+
Sbjct: 338 VDRWCSKRYPNSGFVNNFYQLKLPRLPAFQLNMFRICFRTAYVVSTTGLAILFPYFNQVI 397

Query: 316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
           GV+G + FWPL IYFPVEMYF Q  +EAW+RKW++LR FS++CF+VS  GL+GS++GIIS
Sbjct: 398 GVLGALGFWPLAIYFPVEMYFVQRKVEAWSRKWIVLRTFSFICFLVSLLGLIGSLEGIIS 457

Query: 376 AKLS 379
            KLS
Sbjct: 458 EKLS 461

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.941	0.764	0.559	1.5e-113
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.947	0.728	0.505	2.3e-103
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.947	0.754	0.512	4.4e-100
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.936	0.747	0.508	4.1e-97
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.944	0.745	0.510	4.7e-96
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.947	0.770	0.480	9.7e-96
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.939	0.740	0.487	2.6e-95
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.952	0.744	0.475	1.1e-94
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.622	0.535	0.361	2.5e-43
TAIR|locus:2008605	441	AT1G67640 "AT1G67640" [Arabido	0.604	0.519	0.322	1.3e-38

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 202/361 (55%), Positives = 261/361 (72%)

Query:    21 FSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YY 78
             + GK N   C   V++ L+G  IAYT+  A   RAI KSNCYHR GH A C Y D   Y+
Sbjct:   105 YLGKKNEIVCGVVVYISLFGCGIAYTIVIATCSRAIMKSNCYHRNGHNATCSYGDNNNYF 164

Query:    79 MLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS 138
             M++FG  Q+ +SQ P+FHN+  LS++AA+MSF YSFIG GL + K+I N  + GS  G+ 
Sbjct:   165 MVLFGLTQIFMSQIPNFHNMVWLSLVAAIMSFTYSFIGIGLALGKIIENRKIEGSIRGIP 224

Query:   139 TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFY 198
                  EK+W+V QALG+IAF+YP+S+IL+EIQDTL+SPP   QTMKKAST+++   T F+
Sbjct:   225 AENRGEKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFF 284

Query:   199 LFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 258
               CG FGYAAFGD+TPGNLLTGFGFYEP+WL+D ANA IV+HLVGGYQVYSQPIFA  E+
Sbjct:   285 FCCGCFGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAER 344

Query:   259 WICEKFPENGFLNNEFFLKPPLM--PAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLG 316
              + +K+PEN F+   +  K PL+     R NP+R+C RT+YV+  T +A+ FPYFN+VLG
Sbjct:   345 SLTKKYPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLG 404

Query:   317 VIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 376
             V+G + FWPL +YFPVEM   Q  I +WTR W++LR FS+VC +V    LVGSI G++ A
Sbjct:   405 VVGALAFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLVGA 464

Query:   377 K 377
             K
Sbjct:   465 K 465

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1024 (365.5 bits), Expect = 2.3e-103, P = 2.3e-103
 Identities = 183/362 (50%), Positives = 253/362 (69%)

Query:    16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
             DA     G      C    ++ L+G AI YT+ ++ISM AI++SNC+H+ G +  C  S 
Sbjct:   119 DAVRSILGGFKFKICGLIQYLNLFGIAIGYTIAASISMMAIKRSNCFHKSGGKDPCHMSS 178

Query:    76 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
               YM++FG  +++LSQ PDF  I  +S++AAVMSF YS IG  LG+ +V  NG   GS +
Sbjct:   179 NPYMIVFGVAEILLSQVPDFDQIWWISIVAAVMSFTYSAIGLALGIVQVAANGVFKGSLT 238

Query:   136 GVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 193
             G+S  T T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMKKA+ +SI  
Sbjct:   239 GISIGTVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKISIAV 298

Query:   194 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 253
             TTIFY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IV+HLVG YQV++QPIF
Sbjct:   299 TTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFAQPIF 358

Query:   254 AHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
             A  EK + E++P+N FL+ EF ++ P     ++ N  R+ +R+ +VV+ T I+M  P+FN
Sbjct:   359 AFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLMPFFN 418

Query:   313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
              V+G++G + FWPLT+YFPVEMY KQ  +E W+ +WV L++ S  C ++S    VGSI G
Sbjct:   419 DVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVGSIAG 478

Query:   373 II 374
             ++
Sbjct:   479 VM 480

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 993 (354.6 bits), Expect = 4.4e-100, P = 4.4e-100
 Identities = 185/361 (51%), Positives = 244/361 (67%)

Query:    16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
             DA     G      C    ++ ++G AI YT+ SAISM AI++SNC+H+ G +  C  + 
Sbjct:   103 DAVRSNLGGVKVTLCGIVQYLNIFGVAIGYTIASAISMMAIKRSNCFHKSGGKDPCHMNS 162

Query:    76 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
               YM+ FG VQ++ SQ PDF  +  LS++AAVMSF YS  G  LG+A+V+ NG V GS +
Sbjct:   163 NPYMIAFGLVQILFSQIPDFDQLWWLSILAAVMSFTYSSAGLALGIAQVVVNGKVKGSLT 222

Query:   136 GVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 193
             G+S    T  +K+W   QALGDIAFAY YS+ILIEIQDT+KSPP   +TMKKA+ +S+  
Sbjct:   223 GISIGAVTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKATLVSVSV 282

Query:   194 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 253
             TT+FY+ CG  GYAAFGD +PGNLLTGFGFY PYWL+D+ANA IVIHL+G YQVY QP+F
Sbjct:   283 TTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQVYCQPLF 342

Query:   254 AHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQ 313
             A  EK    +FP++ F+  +  +  P     R N  RL +RTV+V+  T I+M  P+FN 
Sbjct:   343 AFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISMLLPFFND 402

Query:   314 VLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI 373
             V+G++G + FWPLT+YFPVEMY  Q  I  W+ +WV L+VFS  C +VS     GSI G+
Sbjct:   403 VVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAAAGSIAGV 462

Query:   374 I 374
             +
Sbjct:   463 L 463

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 4.1e-97, P = 4.1e-97
 Identities = 183/360 (50%), Positives = 245/360 (68%)

Query:    21 FSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML 80
             + G      C    +V L G  I YT+T++IS+ AI KSNCYH +GH+A C  S+  YM 
Sbjct:   106 YLGGKKVQLCGVAQYVNLVGVTIGYTITASISLVAIGKSNCYHDKGHKAKCSVSNYPYMA 165

Query:    81 IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKV----IGNGFVMGSFSG 136
              FG VQ+ILSQ P+FH +  LS+IAAVMSF+Y+ IG GL +A V    IG   + G+  G
Sbjct:   166 AFGIVQIILSQLPNFHKLSFLSIIAAVMSFSYASIGIGLAIATVASGKIGKTELTGTVIG 225

Query:   137 VSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTI 196
             V  T S EK+W + QA+GDIAF+Y ++ ILIEIQDTL+S PP N+ MK+AS + + TTT+
Sbjct:   226 VDVTAS-EKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASLVGVSTTTV 284

Query:   197 FYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHF 256
             FY+ CG  GYAAFG+  PG+ LT FGFYEPYWLID ANA I +HL+G YQVY+QP F   
Sbjct:   285 FYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVYAQPFFQFV 344

Query:   257 EKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLG 316
             E+   +K+P++ F+N E+  K PL+   R N  RL +RT YVV  T +AM FP+FN +LG
Sbjct:   345 EENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIFPFFNAILG 404

Query:   317 VIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA 376
             ++G   FWPLT+YFPV M+  Q  ++ ++R+W+ L +   VC IVS    VGSI G+I++
Sbjct:   405 LLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVGSIIGLINS 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 189/370 (51%), Positives = 241/370 (65%)

Query:    16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
             DA H   G      C    +V L+GTAI YT+ SAIS+ AIQ+++C    G    C  + 
Sbjct:   101 DAIHSNLGGIKVKVCGVVQYVNLFGTAIGYTIASAISLVAIQRTSCQQMNGPNDPCHVNG 160

Query:    76 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
               YM+ FG VQ+I SQ PDF  +  LS++AAVMSFAYS IG GLGV+KV+ N  + GS +
Sbjct:   161 NVYMIAFGIVQIIFSQIPDFDQLWWLSIVAAVMSFAYSAIGLGLGVSKVVENKEIKGSLT 220

Query:   136 GVS--------TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKAS 187
             GV+        T TS +K+W   Q+LG+IAFAY YS+ILIEIQDT+KSPP    TM+KA+
Sbjct:   221 GVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMRKAT 280

Query:   188 TMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV 247
              +S+  TT+FY+ CG  GYAAFGDN PGNLL   GF  PYWL+D+AN  IVIHLVG YQV
Sbjct:   281 FVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGAYQV 340

Query:   248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPA--FRWNPLRLCFRTVYVVSVTAIA 305
             Y QP+FA  EK    +FPE+ F+  E  +K  L P   F  N  RL +RT +V++ T I+
Sbjct:   341 YCQPLFAFVEKEASRRFPESEFVTKE--IKIQLFPGKPFNLNLFRLVWRTFFVMTTTLIS 398

Query:   306 MSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFG 365
             M  P+FN V+G++G + FWPLT+YFPVEMY  Q N+  W  KWV L+V S  C  VS   
Sbjct:   399 MLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVSVAA 458

Query:   366 LVGSIQGIIS 375
               GS+ GI+S
Sbjct:   459 AAGSVIGIVS 468

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 952 (340.2 bits), Expect = 9.7e-96, P = 9.7e-96
 Identities = 174/362 (48%), Positives = 242/362 (66%)

Query:    16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
             DA     G      C    ++ L+G  + YT+ ++ISM AI++SNC+H  G +  C  S 
Sbjct:    92 DAVRSILGGFRFKICGLIQYLNLFGITVGYTIAASISMMAIKRSNCFHESGGKNPCHMSS 151

Query:    76 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
               YM++FG  +++LSQ  DF  I  LS++AA+MSF YS IG  LG+ +V  NG V GS +
Sbjct:   152 NPYMIMFGVTEILLSQIKDFDQIWWLSIVAAIMSFTYSAIGLALGIIQVAANGVVKGSLT 211

Query:   136 GVS--TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIIT 193
             G+S    T  +K+W   QALGDIAFAY YS++LIEIQDT++SPP  ++TMK A+ +SI  
Sbjct:   212 GISIGAVTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIATRISIAV 271

Query:   194 TTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIF 253
             TT FY+ CG  GYAAFGD  PGNLLTGFGFY P+WL+D+ANA IVIHLVG YQV++QPIF
Sbjct:   272 TTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQVFAQPIF 331

Query:   254 AHFEKWICEKFPENGFLNNEFFLK-PPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
             A  EK    +FP++  +  E+ ++ P     ++ N  R  +R+ +VV  T I+M  P+FN
Sbjct:   332 AFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVISMLMPFFN 391

Query:   313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
              V+G++G + FWPLT+YFPVEMY +Q  +E W+ KWV L++ S  C +++    VGSI G
Sbjct:   392 DVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVAGVGSIAG 451

Query:   373 II 374
             ++
Sbjct:   452 VM 453

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 948 (338.8 bits), Expect = 2.6e-95, P = 2.6e-95
 Identities = 176/361 (48%), Positives = 239/361 (66%)

Query:    21 FSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYML 80
             + G      C    +  L G  I YT+T++ISM A+++SNC+H+ GH   C  S+T +M+
Sbjct:   111 YLGGRKVQLCGLAQYGNLIGITIGYTITASISMVAVKRSNCFHKNGHNVKCATSNTPFMI 170

Query:    81 IFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNG-FVMGSFSGVST 139
             IF  +Q+ILSQ P+FHN+  LS++AAVMSF Y+ IG GL +AK  G G  V  + +GV+ 
Sbjct:   171 IFAIIQIILSQIPNFHNLSWLSILAAVMSFCYASIGVGLSIAKAAGGGEHVRTTLTGVTV 230

Query:   140 TTSI---EKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPA-NQTMKKASTMSIITTT 195
                +   EK+W   QA+GDIAFAY YS +LIEIQDTLK+ PP+ N+ MK+AS + + TTT
Sbjct:   231 GIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKAMKRASLVGVSTTT 290

Query:   196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
              FY+ CG  GYAAFG++ PGN LTGFGFYEP+WLID AN  I +HL+G YQV+ QPIF  
Sbjct:   291 FFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIGAYQVFCQPIFQF 350

Query:   256 FEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVL 315
              E    +++P+N F+  E+ +  P    F  N LRL +RT YVV    +AM FP+FN  L
Sbjct:   351 VESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTAVVAMIFPFFNDFL 410

Query:   316 GVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIIS 375
             G+IG   FWPLT+YFP+EM+  Q  I  ++  W  L++ S+ CFIVS     GS+QG+I 
Sbjct:   411 GLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVSLVAAAGSVQGLIQ 470

Query:   376 A 376
             +
Sbjct:   471 S 471

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 173/364 (47%), Positives = 238/364 (65%)

Query:    16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD 75
             D    + G      C    +  L G  + YT+T++IS+ A+ KSNC+H +GH A C  S+
Sbjct:   110 DVVRSYLGGRKVQLCGVAQYGNLIGVTVGYTITASISLVAVGKSNCFHDKGHTADCTISN 169

Query:    76 TYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFS 135
               YM +FG +Q+ILSQ P+FH +  LS++AAVMSF Y+ IG GL +A V G      S +
Sbjct:   170 YPYMAVFGIIQVILSQIPNFHKLSFLSIMAAVMSFTYATIGIGLAIATVAGGKVGKTSMT 229

Query:   136 GVST---TTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSII 192
             G +     T+ +K+W   QA+GDIAFAY Y+ +LIEIQDTL+S P  N+ MK+AS + + 
Sbjct:   230 GTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASLVGVS 289

Query:   193 TTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 252
             TTT FY+ CG  GYAAFG+N PG+ LT FGF+EP+WLID ANA I +HL+G YQV++QPI
Sbjct:   290 TTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVFAQPI 349

Query:   253 FAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN 312
             F   EK     +P+N F+ +E+ +  P +  F  +  RL +RT YVV  T +AM FP+FN
Sbjct:   350 FQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIFPFFN 409

Query:   313 QVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQG 372
              +LG+IG   FWPLT+YFPVEM+  Q  I+ ++ +W+ L+   YVC IVS     GSI G
Sbjct:   410 AILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAGSIAG 469

Query:   373 IISA 376
             +IS+
Sbjct:   470 LISS 473

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 347 (127.2 bits), Expect = 2.5e-43, Sum P(2) = 2.5e-43
 Identities = 91/252 (36%), Positives = 130/252 (51%)

Query:    19 HGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSD-TY 77
             H F  K   W       V   G  I Y VT   S++      C   EGH   C+    TY
Sbjct:   101 HAFGEKLGLWIVVPQQLVVEVGVNIVYMVTGGKSLKKFHDVLC---EGH--GCKNIKLTY 155

Query:    78 YMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGV 137
             +++IF +V  +LSQ P+F++I  +S+ AAVMS +YS I +G  V K    G V      +
Sbjct:   156 FIMIFASVHFVLSQLPNFNSISGVSLAAAVMSLSYSTIAWGASVDK----GKVADVDYHL 211

Query:   138 STTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSIITTT 195
               TTS  K++    ALGD+AFAY    +++EIQ T+ S P  P+ + M K   ++ I   
Sbjct:   212 RATTSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVA 271

Query:   196 IFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAH 255
             + Y      GY AFG++   N+L       P WLI LAN  +VIH++G YQ+Y+ P+F  
Sbjct:   272 LCYFPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDM 329

Query:   256 FEKWICEK--FP 265
              E  + +K  FP
Sbjct:   330 IETVLVKKLRFP 341

GO:0009536 "plastid" evidence=IC

TAIR|locus:2008605 AT1G67640 "AT1G67640" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
 Identities = 81/251 (32%), Positives = 128/251 (50%)

Query:    19 HGFSGKTNAWAC---SFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACE-YS 74
             H F  K   W        V VG+    I Y VT   S++ I    C         C+   
Sbjct:   103 HAFGEKLGLWIVVPQQLIVEVGV---DIVYMVTGGKSLKKIHDLLC-------TDCKNIR 152

Query:    75 DTYYMLIFGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF 134
              TY+++IF ++  +L+  P+F++I  +S+ AAVMS +YS I +   V K +        +
Sbjct:   153 TTYWIMIFASIHFVLAHLPNFNSISIVSLAAAVMSLSYSTIAWATSVKKGVHPNV---DY 209

Query:   135 SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPP--PANQTMKKASTMSII 192
             S  ++TTS   ++    ALGD+AFAY    +++EIQ T+ S P  P+   M K   ++ I
Sbjct:   210 SSRASTTS-GNVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEKPSKIAMWKGVVVAYI 268

Query:   193 TTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPI 252
                I Y       Y  FG++   N+L      +P WLI +ANAF+V+H++G YQ+Y+ P+
Sbjct:   269 VVAICYFPVAFVCYYIFGNSVDDNIL--MTLEKPIWLIAIANAFVVVHVIGSYQIYAMPV 326

Query:   253 FAHFEKWICEK 263
             F   E ++ +K
Sbjct:   327 FDMLETFLVKK 337

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FF99	AAP7_ARATH	No assigned EC number	0.5626	0.9366	0.7601	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033459001 SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (399 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	2e-62

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  205 bits (523), Expect = 2e-62
 Identities = 89/358 (24%), Positives = 151/358 (42%), Gaps = 37/358 (10%)

Query: 23  GKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIF 82
           G        F + V L+G  I+Y + +  ++ AI  S           C  S  Y+++IF
Sbjct: 81  GPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDT-------CHISLVYFIIIF 133

Query: 83  GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS---- 138
           G + + LS  P+   +  LS++AAV S           +  ++ +   +G  +       
Sbjct: 134 GLIFIPLSFIPNLSALSILSLVAAVSSLY---------IVILVLSVAELGVLTAQGVGSL 184

Query: 139 TTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFY 198
              +  K+  +  A+G I FA+    +L+ IQ+T+KSP    + M K    +II  T+ Y
Sbjct: 185 GAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPS-KFKAMTKVLLTAIIIVTVLY 243

Query: 199 LFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQPIFAHFEK 258
           +  G  GY AFG+N  GN+L         WLID+AN  +V+HL+  Y + + PI    E 
Sbjct: 244 ILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVEN 301

Query: 259 WICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI 318
            +  K       +N                LR+  R+  VV    IA+S P+    L ++
Sbjct: 302 LLFRKG--ASGKHNPKSKL-----------LRVVIRSGLVVITYLIAISVPFLGDFLSLV 348

Query: 319 GGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRV-FSYVCFIVSTFGLVGSIQGIIS 375
           G     PLT   P   + K    +  + + +        +C ++    +   + G+I 
Sbjct: 349 GATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLII 406

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.9
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.59
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.42
PRK15132	403	tyrosine transporter TyrP; Provisional	99.35
PRK10483	414	tryptophan permease; Provisional	99.24
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.22
PRK09664	415	tryptophan permease TnaB; Provisional	99.15
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.12
PRK10655	438	potE putrescine transporter; Provisional	98.49
PRK11021	410	putative transporter; Provisional	98.37
PRK10746	461	putative transport protein YifK; Provisional	98.29
PRK10644	445	arginine:agmatin antiporter; Provisional	98.27
PRK10249	458	phenylalanine transporter; Provisional	98.26
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	98.24
TIGR00909	429	2A0306 amino acid transporter.	98.24
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	98.21
PRK10238	456	aromatic amino acid transporter; Provisional	98.2
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	98.18
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	98.17
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	98.14
TIGR00913	478	2A0310 amino acid permease (yeast).	98.13
PRK15049	499	L-asparagine permease; Provisional	98.11
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	98.08
PRK11357	445	frlA putative fructoselysine transporter; Provisio	98.07
PRK10580	457	proY putative proline-specific permease; Provision	98.04
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	98.04
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	98.02
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	98.01
PRK10197	446	gamma-aminobutyrate transporter; Provisional	98.01
TIGR00906	557	2A0303 cationic amino acid transport permease.	98.01
PRK11387	471	S-methylmethionine transporter; Provisional	97.99
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.94
TIGR00930	953	2a30 K-Cl cotransporter.	97.88
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.79
TIGR00911	501	2A0308 L-type amino acid transporter.	97.71
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	97.69
PRK10836	489	lysine transporter; Provisional	97.48
TIGR00912	359	2A0309 spore germination protein (amino acid perme	97.44
COG0531	466	PotE Amino acid transporters [Amino acid transport	97.4
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	97.39
PRK15238	496	inner membrane transporter YjeM; Provisional	97.01
TIGR00800	442	ncs1 NCS1 nucleoside transporter family. The NCS1	96.92
TIGR02358	386	thia_cytX probable hydroxymethylpyrimidine transpo	96.72
PRK11375	484	allantoin permease; Provisional	96.61
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	96.53
KOG1289	550	consensus Amino acid transporters [Amino acid tran	96.1
PF03845	320	Spore_permease: Spore germination protein; InterPr	96.04
PRK09442	483	panF sodium/panthothenate symporter; Provisional	95.9
COG1457	442	CodB Purine-cytosine permease and related proteins	95.73
COG3949	349	Uncharacterized membrane protein [Function unknown	95.63
TIGR02119	471	panF sodium/pantothenate symporter. Pantothenate (	95.62
PRK11017	404	codB cytosine permease; Provisional	95.47
KOG1286	554	consensus Amino acid transporters [Amino acid tran	95.15
COG0591	493	PutP Na+/proline symporter [Amino acid transport a	94.35
TIGR00813	407	sss transporter, SSS family. have different number	94.31
PF00474	406	SSF: Sodium:solute symporter family; InterPro: IPR	94.21
COG0833	541	LysP Amino acid transporters [Amino acid transport	93.25
PRK12488	549	acetate permease; Provisional	91.09
PRK15419	502	proline:sodium symporter PutP; Provisional	90.02
TIGR02121	487	Na_Pro_sym sodium/proline symporter. This family c	85.24
TIGR02711	549	symport_actP cation/acetate symporter ActP. Member	83.21

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.4e-51  Score=389.18  Aligned_cols=320  Identities=21%  Similarity=0.281  Sum_probs=269.3

Q ss_pred             CCHHhHhh----------hhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHH
Q 016969           12 PDKFDASH----------GFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI   81 (379)
Q Consensus        12 ~sY~dl~~----------~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i   81 (379)
                      .+|+|.++          +.+|+++|.++++++.+.|+|.|++|++++++|++++.+.   +..+     .++.+.|+.+
T Consensus       114 ~~y~~~~~~a~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~---~~~~-----~~s~~~~i~~  185 (449)
T KOG1304|consen  114 LDYAETAESAMEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDE---HSPG-----VLSVRLYILI  185 (449)
T ss_pred             ccHHHHHHHHHcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhc---cCCC-----CccHHHHHHH
Confidence            55666665          4567888999999999999999999999999999999972   1111     4678889999


Q ss_pred             HHHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcC
Q 016969           82 FGAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYP  161 (379)
Q Consensus        82 ~~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~  161 (379)
                      ..++++|++++||||.|+++|++|+++.++...++    +++..++.+      +.++.+...+..+.+.++|+.+|||+
T Consensus       186 ~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~~~~g~~ii----~~y~~~~~~------~~~~~~~~~~~~~~~lf~GtaifafE  255 (449)
T KOG1304|consen  186 QLPPLLLLNLIRNLKILSPFSLFANVFILVGLAII----MYYLVQDLP------PTSDLPAVTGWSGLPLFFGTAIFAFE  255 (449)
T ss_pred             HHHHHHHHHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHhccC------CccccccccchhhhHHHHHHHHHHhc
Confidence            99999999999999999999999999765433322    222222211      11122233334458889999999999


Q ss_pred             CchhHHHHHhHhCCCCCchhhhh---hhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHH
Q 016969          162 YSLILIEIQDTLKSPPPANQTMK---KASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIV  238 (379)
Q Consensus       162 ~~~~~~~i~~~M~~p~p~~~~~~---~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~  238 (379)
                      |++++.|++|+||+|    ++|.   ++++.+|.+++++|..+|++||++|||++++.|+.|+|  + +++.+.++++++
T Consensus       256 Gig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~a  328 (449)
T KOG1304|consen  256 GIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLA  328 (449)
T ss_pred             cceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHH
Confidence            999999999999998    8999   89999999999999999999999999999999999998  3 889999999999


Q ss_pred             HHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHH
Q 016969          239 IHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVI  318 (379)
Q Consensus       239 i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lv  318 (379)
                      +.+.++||||++|..+.+|+.+.+|..+                 .|.++....+|+.+++++.++|.++||++++++|+
T Consensus       329 i~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLV  391 (449)
T KOG1304|consen  329 IAIFLTYPLQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFLIAVAVPNLALFISLV  391 (449)
T ss_pred             HHHHHcCchhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHH
Confidence            9999999999999999999987654321                 12457889999999999999999999999999999


Q ss_pred             hhhhhhhhHhhhhhHHHHHhcCcc---hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969          319 GGVIFWPLTIYFPVEMYFKQMNIE---AWTRKWVMLRVFSYVCFIVSTFGLVGSIQGI  373 (379)
Q Consensus       319 Gs~~~~~l~fi~P~l~y~~~~~~~---~~~~~~~~~~~i~~~g~~~~v~gt~~si~~l  373 (379)
                      ||+|++.+++++|++++++.++++   ++.++++.|.+++++|+++++.|||+|++++
T Consensus       392 Gs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  392 GSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            999999999999999999964332   3456667899999999999999999999874

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-49  Score=381.21  Aligned_cols=335  Identities=36%  Similarity=0.593  Sum_probs=292.1

Q ss_pred             cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      |+..+|.|+|+++||+++++++.+++.+.++|.|+.|++..+|++..+.+..+.|+.      .++.+.|+++++++++|
T Consensus       102 ~r~~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~  175 (437)
T KOG1303|consen  102 KRRYRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLP  175 (437)
T ss_pred             ccCCChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHH
Confidence            455789999999999999999999999999999999999999999999998765431      24467899999999999


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~  168 (379)
                      ++++||++.+++.|..|.++++.|..+.+.+++.++.+.+..+.   +.+.......   .++++|++.|+|++|..+||
T Consensus       176 ~s~lp~~~~l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~---~~~~~~~~~~---~f~a~g~iaFaf~gH~v~pe  249 (437)
T KOG1303|consen  176 LSQLPNFHSLSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSG---GYLDLGTIPT---VFTALGIIAFAYGGHAVLPE  249 (437)
T ss_pred             HHHCCCcchhHHHHHHHHHHHHHHHHHHHHHhhccccccCCccc---CcccCCCCcc---hhhhhhheeeeecCCeeeee
Confidence            99999999999999999999988888888888777655422111   1111111111   18999999999999999999


Q ss_pred             HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhccc
Q 016969          169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVY  248 (379)
Q Consensus       169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~  248 (379)
                      ||++||+|    ++|+|++..++.+++.+|+.+++.||++|||+++++++.|++  +|.|+...+++++.+|++.+|+++
T Consensus       250 Iq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~  323 (437)
T KOG1303|consen  250 IQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIY  323 (437)
T ss_pred             hHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhh
Confidence            99999987    669999999999999999999999999999999999999997  589999999999999999999999


Q ss_pred             ccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhHh
Q 016969          249 SQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTI  328 (379)
Q Consensus       249 ~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~f  328 (379)
                      .+|..+.+|+....++++  +.             .+....|.+.|+.+++.++++|+.+|+|+++++++||+...++++
T Consensus       324 a~pl~~~~E~~~~~~~~~--~~-------------~~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~  388 (437)
T KOG1303|consen  324 AQPLFDVVEKLIGVKHPD--FK-------------KRSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTF  388 (437)
T ss_pred             hcchHHHHHHHhccCCcc--cc-------------ccccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHH
Confidence            999999999988654321  10             123478999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 016969          329 YFPVEMYFKQMNIEAWTRKWVMLRVF-SYVCFIVSTFGLVGSIQGIISA  376 (379)
Q Consensus       329 i~P~l~y~~~~~~~~~~~~~~~~~~i-~~~g~~~~v~gt~~si~~li~~  376 (379)
                      ++|+++|++++|+++++.+|.+++.+ .++|++.++....+++++++.+
T Consensus       389 ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  389 ILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             HHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            99999999999999999999998888 7999999999999999998764

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=2.9e-49  Score=392.74  Aligned_cols=343  Identities=15%  Similarity=0.105  Sum_probs=257.4

Q ss_pred             cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      ++.++|+|+++++||+++++++++++.++++|+|++|+++++|+++.+++..-.++ ..+. ...++..+.+++.++++|
T Consensus       118 ~~~~sY~~la~~~~G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~-~~~~-~~~~r~~~~~i~~~i~lP  195 (467)
T PTZ00206        118 TNIRTYEGVARVLLGPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPD-FLKQ-KSGNRLLTSLMWLCFMLP  195 (467)
T ss_pred             CCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc-hhhh-ccCcEEeeeehhhhHhhh
Confidence            57789999999999999999999999999999999999999999999885310000 0000 001222344556778899


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc--cccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF--SGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  166 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~  166 (379)
                      ++++|++++|+++|.+|+++.+...+++++.+...+..++..+.+.  .+.++........+.+.++|+++|||+||.+.
T Consensus       196 Ls~~r~i~~L~~~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~  275 (467)
T PTZ00206        196 LVIPRHIDSLRYVSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITA  275 (467)
T ss_pred             cccccchHHHHHHHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhh
Confidence            9999999999999999987543332222222222222111000000  00000011111235789999999999999999


Q ss_pred             HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhc
Q 016969          167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQ  246 (379)
Q Consensus       167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~syp  246 (379)
                      ||+++|||+|  +.+|+.++...++.++.++|..+|++||++|||+++++|+.|++. .++....++++++.+.++.+||
T Consensus       276 ~~i~~~M~~~--t~~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p-~~~~~~~v~~~~~~~~v~~syp  352 (467)
T PTZ00206        276 YEVYMDMTNR--SVGKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDP-VNEPAIMVGFVGVLVKLFVSYA  352 (467)
T ss_pred             HHHHHhhccc--chhHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCC-CCCchhhHHHHHHHHHHHHhhh
Confidence            9999999986  558999999999999999999999999999999999999999941 2334556788889999999999


Q ss_pred             ccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhh
Q 016969          247 VYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPL  326 (379)
Q Consensus       247 l~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l  326 (379)
                      ++.+|+|+.+++.+..  +++         +.+       .++|...+..+++++.++|+++|+++.+++|+||++++.+
T Consensus       353 L~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l  414 (467)
T PTZ00206        353 LLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLL  414 (467)
T ss_pred             hhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHH
Confidence            9999999999887632  110         111       2556666766777889999999999999999999999999


Q ss_pred             HhhhhhHHHHHhc--Cc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969          327 TIYFPVEMYFKQM--NI-EAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGII  374 (379)
Q Consensus       327 ~fi~P~l~y~~~~--~~-~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li  374 (379)
                      +|++|+++|++..  +. +....+|..+++++++|++.++.|||+|+++.+
T Consensus       415 ~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        415 GFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             HHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            9999999999842  22 222334567889999999999999999999876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=4.8e-42  Score=339.88  Aligned_cols=319  Identities=18%  Similarity=0.175  Sum_probs=253.5

Q ss_pred             CHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC
Q 016969           13 DKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA   92 (379)
Q Consensus        13 sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~   92 (379)
                      +|.|+++..+||+++.+..+...+++++.|+.|++..++++..+..             .++++.|+++++++++|++++
T Consensus       121 ~~~e~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i  187 (473)
T PLN03074        121 QWFEVLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFI  187 (473)
T ss_pred             HHHHHHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHc
Confidence            7899999999999999999999999999999999988887665421             245678999999999999999


Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHHhH
Q 016969           93 PDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDT  172 (379)
Q Consensus        93 r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~  172 (379)
                      |++++++++|.+|..+++.+...++..++..+..        ++.+. +...+...++.+.++++|+|+||..+||+++|
T Consensus       188 ~sl~~l~~~S~ig~~~tl~~av~i~i~~i~~~~~--------~~~~~-~~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~  258 (473)
T PLN03074        188 PSFHNYRIWSFLGLLMTTYTAWYMTIAALSHGQV--------EGVKH-SGPTKLVLYFTGATNILYTFGGHAVTVEIMHA  258 (473)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--------CCCCC-CCchhHHHHHHHHHHHHHHhcccccHHHHHHh
Confidence            9999999999999876543322222222222111        11110 11234456778889999999999999999999


Q ss_pred             hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccc--cccccccCCCCChHHHHHHHHHHHHHHHHhhccccc
Q 016969          173 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTP--GNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQVYSQ  250 (379)
Q Consensus       173 M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~--~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl~~~  250 (379)
                      ||||    ++|+++...++..+...|+.+|+.||++|||+++  ++.+.|+|  .+. ..+++++++.++++.+||++.+
T Consensus       259 M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp--~~~-~~~~~~~~~~i~~~~sy~l~~~  331 (473)
T PLN03074        259 MWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP--RSG-WRDAAVILMLIHQFITFGFACT  331 (473)
T ss_pred             ccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC--Cch-HHHHHHHHHHHHHHHHHHHHHh
Confidence            9987    7899988899999999999999999999999976  45677787  233 3578899999999999999999


Q ss_pred             chHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhHhhh
Q 016969          251 PIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYF  330 (379)
Q Consensus       251 p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~fi~  330 (379)
                      |..+..|+....+  +                 .|....|.++|+.+++.++++|..+|+|+++++|+||+++++++|++
T Consensus       332 p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~  392 (473)
T PLN03074        332 PLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYII  392 (473)
T ss_pred             hHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHH
Confidence            9999988865321  0                 12246789999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCc-----------c--hhhHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcC
Q 016969          331 PVEMYFKQMNI-----------E--AWTRK--WVMLRVFSYV-CFIVSTFGLVGSIQGIISAKLS  379 (379)
Q Consensus       331 P~l~y~~~~~~-----------~--~~~~~--~~~~~~i~~~-g~~~~v~gt~~si~~li~~~~~  379 (379)
                      |+++|++.+++           +  .++++  .+.|++++++ |+++.+.|+|+|++++++++++
T Consensus       393 P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~  457 (473)
T PLN03074        393 PSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDT  457 (473)
T ss_pred             HHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence            99999984322           1  11222  2678888765 5666799999999999999863

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=4.1e-45  Score=359.01  Aligned_cols=338  Identities=22%  Similarity=0.277  Sum_probs=265.7

Q ss_pred             cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      ++..+|+|++++++|+++++++++++.++++|.|++|+++.+|+++++.+....+       ...++..|.++..++++|
T Consensus        65 ~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~p  137 (409)
T PF01490_consen   65 TGRRSYGDLARRAFGPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLP  137 (409)
T ss_pred             cccccccccccccccccccccccchheeccccccceeEEEeeeeeeccccccccc-------cccccccccccccccccc
Confidence            5899999999999999999999999999999999999999999999998753221       134566777788889999


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~  168 (379)
                      ++++||++++++.|.+|.++.+.+..+.+. ........++.+.   +.++.....+.++.+.++|+++|||.||.++|+
T Consensus       138 ls~~~~l~~l~~~s~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~  213 (409)
T PF01490_consen  138 LSFLKNLKSLRYLSILGLFSIFYFIVIVVI-YIISYGPGEPSGV---PSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPP  213 (409)
T ss_pred             ccccchhhHHHHHhhhhhhccceeeeeecc-eeeeeeccccccc---ccccccccchhhHHHHhhhhhhhhhhcccccce
Confidence            999999999999999998864332111111 1111111111111   111111234456799999999999999999999


Q ss_pred             HHhHhCCCCCch-hhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhcc
Q 016969          169 IQDTLKSPPPAN-QTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV  247 (379)
Q Consensus       169 i~~~M~~p~p~~-~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl  247 (379)
                      +++|||+|  ++ +|++++...++.+++++|..+|+.||++||+++++|++.|+|  +++++..++++++.++++.+||+
T Consensus       214 i~~~m~~~--~~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl  289 (409)
T PF01490_consen  214 IQSEMKDP--SKFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPL  289 (409)
T ss_pred             eeeeccCC--ccccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--Ccccccccccccchhhhhhcccc
Confidence            99999986  33 456699999999999999999999999999999999999998  34467788999999999999999


Q ss_pred             cccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhH
Q 016969          248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT  327 (379)
Q Consensus       248 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~  327 (379)
                      +.+|.++.+|+.+.++....+..   .+.  +    .+.++.|..+|+.+++.++++|+.+|+++++++++||++++.++
T Consensus       290 ~~~p~~~~l~~~~~~~~~~~~~~---~~~--~----~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~  360 (409)
T PF01490_consen  290 QLFPARNSLENLLFKRAASSRDS---PKN--T----PSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFIS  360 (409)
T ss_pred             ccchhHhhhhhheeccccccccc---ccc--c----cccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHH
Confidence            99999999999875420000000   000  1    13457789999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCcchhhHHH-----HHHHHHHHHHHHHHHHHHHHHH
Q 016969          328 IYFPVEMYFKQMNIEAWTRKW-----VMLRVFSYVCFIVSTFGLVGSI  370 (379)
Q Consensus       328 fi~P~l~y~~~~~~~~~~~~~-----~~~~~i~~~g~~~~v~gt~~si  370 (379)
                      |++|+++|+|.+|.++.+.+|     ..++.++++|++.++.|+|+++
T Consensus       361 fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  361 FILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             HHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            999999999976554322222     2356678899999999999886

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=6.2e-38  Score=302.82  Aligned_cols=342  Identities=15%  Similarity=0.179  Sum_probs=262.0

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCch-hhHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTY-YMLIFGAV   85 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~i~~~i   85 (379)
                      ...+.++|++++++++|+.++....+.+.....| |++|+++++|.++.........++.. .. ..+++. |++....+
T Consensus        62 ~~~~~~ty~~l~~~~~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~-~~-~~~~~~~ill~~~~~  138 (411)
T KOG1305|consen   62 KKSGERTYSSLGDLIFGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGG-SH-YLDRNFLILLVLLFI  138 (411)
T ss_pred             hhcCCCCHHHHHHHHcCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccc-cc-cccceeEeehHHHHH
Confidence            3456669999999999999988888888888888 89999999999997765422111110 00 123333 45666788


Q ss_pred             HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969           86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI  165 (379)
Q Consensus        86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~  165 (379)
                      +.|+++.|++++|+++|.++.++.+.+.++++...+......+..   ...   .++....++.+.++|+++|||.||.|
T Consensus       139 i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~pi~~faf~Ch~n  212 (411)
T KOG1305|consen  139 ILPLSLLKNLDSLKYTSALSLASVVYFVVLVVYKYFQGPCALGRL---SYL---VPNLSSFSSLFYALPIFVFAFTCHSN  212 (411)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCc---ccc---cCCcchhhhhhhhhhhhheeeecccc
Confidence            899999999999999999998865444333322222211100100   011   11222226789999999999999999


Q ss_pred             HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChH----HHHHHHHHHHHHH
Q 016969          166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYW----LIDLANAFIVIHL  241 (379)
Q Consensus       166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~----~~~~~~~~~~i~~  241 (379)
                      +.++++|||+|  +++|+.++...+...+.++|..+|++||++|||++.+|++.++|+..+..    ....++..+.++.
T Consensus       213 ~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~  290 (411)
T KOG1305|consen  213 VFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAV  290 (411)
T ss_pred             ceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHH
Confidence            99999999986  78999999999999999999999999999999999999999998533322    3568899999999


Q ss_pred             HHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhh
Q 016969          242 VGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGV  321 (379)
Q Consensus       242 ~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~  321 (379)
                      +.++|+..+|+|..+++.+.+..|+.         +      +..+.++.+++..++..+.+.|+++|+++++++++||+
T Consensus       291 ~l~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT  355 (411)
T KOG1305|consen  291 LLTFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGAT  355 (411)
T ss_pred             HHHHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhh
Confidence            99999999999999888776543321         0      11235667888889999999999999999999999999


Q ss_pred             hhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 016969          322 IFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISA  376 (379)
Q Consensus       322 ~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~  376 (379)
                      +++.++|++|+++|++..|.+.+.  ....+...++|+..++.|+..-+.++..+
T Consensus       356 ~~~~i~FI~P~~~yl~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~i~~~~~~  408 (411)
T KOG1305|consen  356 SSTSISFILPALYYLKASKKKSRE--PLGALIFLILGVLLSIIGVAVMIYDLLAK  408 (411)
T ss_pred             hhhhhHHHHHHHhhheeecccccc--chHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999965542222  23345567889999999999999888765

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.5e-40  Score=299.18  Aligned_cols=338  Identities=17%  Similarity=0.161  Sum_probs=272.5

Q ss_pred             cCCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   87 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~   87 (379)
                      |-+.+|.++|..++++. |.+.+.+.+++.++++|+.|++..||.+..-++..           ..+++-|+++.+..++
T Consensus       182 rvRdsYvaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~-----------svd~~sWm~i~~a~LL  250 (524)
T KOG4303|consen  182 RVRDSYVAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGL-----------SVDKASWMMITSASLL  250 (524)
T ss_pred             EeehhHHHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCC-----------CccccchhhhhhHHHh
Confidence            45689999999999986 56999999999999999999999999887766531           2456779999999999


Q ss_pred             HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969           88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  167 (379)
Q Consensus        88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~  167 (379)
                      |.+++||+|..+.+|++.++.-++.-.++++.|+-+.     .|   .++...+...+.-+++.++|+++|+|..|..+|
T Consensus       251 pc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~-----~d---W~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP  322 (524)
T KOG4303|consen  251 PCSFLKDLKIVSRLSFFCTISHLVINLIMVLYCLSFV-----SD---WSWSKVTFSIDINTFPISVGMIVFSYTSQIFLP  322 (524)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hh---ccceeEEEEEEcccCceEEEEEEEeeeceeecc
Confidence            9999999999999999998876555455554443221     11   222222333444457789999999999999999


Q ss_pred             HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhhcc
Q 016969          168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGYQV  247 (379)
Q Consensus       168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sypl  247 (379)
                      +++..|++|    .+|.-.+.++-+..+++-..+|.+||++|||+|+..|++|+|   ++....++++++++..++|||+
T Consensus       323 ~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSYPL  395 (524)
T KOG4303|consen  323 NLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSYPL  395 (524)
T ss_pred             ccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcCCc
Confidence            999999987    789999999999999999999999999999999999999997   4556678999999999999999


Q ss_pred             cccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhhhH
Q 016969          248 YSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWPLT  327 (379)
Q Consensus       248 ~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~l~  327 (379)
                      -++.+.+.+|+-+....|+..+..- |.   |+   -+.+.+.+.+|..+++.+.++|+.+|++..+++|+|+++++.++
T Consensus       396 PfyAAvelLe~nlF~g~p~t~Fpsc-ys---~D---g~Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLs  468 (524)
T KOG4303|consen  396 PFYAAVELLENNLFLGYPQTPFPSC-YS---PD---GSLKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLS  468 (524)
T ss_pred             hHHHHHHHHHHhhhcCCCCCCCcee-eC---CC---cchhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHH
Confidence            8888888888877654454433211 11   10   01122346789999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Q 016969          328 IYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSIQGIISAKLS  379 (379)
Q Consensus       328 fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si~~li~~~~~  379 (379)
                      |+.|++||++++++..-......+..+++.|...+|.|.|.|-.++++++.+
T Consensus       469 FiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~  520 (524)
T KOG4303|consen  469 FIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINS  520 (524)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhc
Confidence            9999999999765443223345677889999999999999999999998764

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.90  E-value=1.4e-22  Score=198.19  Aligned_cols=338  Identities=14%  Similarity=0.154  Sum_probs=227.8

Q ss_pred             cccCC-CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 016969            7 FYFYL-PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   85 (379)
Q Consensus         7 ~~~~~-~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i   85 (379)
                      .+++. .+|.|++++.+||+++++.++...+.++|.+.+|.+..+|.+++.+++.. +.    ++  .+++.+.+++..+
T Consensus        66 ~~~~~~~~~~~~~~~~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~-~~----~~--~~r~~~~lif~~~  138 (415)
T COG0814          66 SSPNGKASITSLVEDYLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQF-GL----NP--LPRKLGSLIFALV  138 (415)
T ss_pred             hCCCCcccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhc-cc----CC--cchHHHHHHHHHH
Confidence            34555 49999999999999999999999999999999999999999999997521 11    11  3456667778888


Q ss_pred             HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969           86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI  165 (379)
Q Consensus        86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~  165 (379)
                      +.++++.++...++..|.+........++...    +.....+.  ......|..+ .....+...++|++.|||+||++
T Consensus       139 ~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~----~~~~~~~~--~~l~~~~~~~-~~~~~~~~~~ipv~vfsF~~h~~  211 (415)
T COG0814         139 LAFLSWLGTLAVLKITSLLVFGKVIYLVLLVV----YLIPHWNP--ANLFALPSAS-QSFWKYLLLAIPVFVFSFGFHGN  211 (415)
T ss_pred             HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHH----HHhcccCH--HHHhcccccc-hhhHHHHHHHhhHHHhhhhCCcc
Confidence            88899999999999999998875433222211    11111010  0011111011 23334578899999999999999


Q ss_pred             HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccccCCCCChHHHHHHHHHHHHHHHHhh
Q 016969          166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTGFGFYEPYWLIDLANAFIVIHLVGGY  245 (379)
Q Consensus       166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n~~~~~~~~~~~~~~~~~~i~~~~sy  245 (379)
                      +|++++||+++  ++++.+|+...+..+..++|..+++++|..+|+++.++++.+.++  ++.+.. .+.....+...++
T Consensus       212 i~si~~~~~~~--~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~--~~~~l~-~~~~~~~~~~~~~  286 (415)
T COG0814         212 IPSLVNYMRKN--SKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ--NISLLS-ALAGVINSPILSI  286 (415)
T ss_pred             chHHHHHhccc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc--hHHHHH-HHHHhhcchHHHH
Confidence            99999999975  334599999999999999999999999999999999999999873  333221 2222333333555


Q ss_pred             cccccchHHHHHHHHHhh---CC--CCCCC-CcccccCCCCCCcCCCchhH--HHHHHHHHHHHHHHHHHccChHHHHHH
Q 016969          246 QVYSQPIFAHFEKWICEK---FP--ENGFL-NNEFFLKPPLMPAFRWNPLR--LCFRTVYVVSVTAIAMSFPYFNQVLGV  317 (379)
Q Consensus       246 pl~~~p~~~~ie~~~~~~---~~--~~~~~-~~~~~~~~p~~~~~~~~~~~--~~~r~~~~~~~~~iA~~iP~l~~vl~l  317 (379)
                      |...++.+...-..++..   ++  ++... +++.    +   +++..+.+  .......++..+..+...|..+.+++-
T Consensus       287 ~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~----~---~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~  359 (415)
T COG0814         287 ALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSK----P---GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIAT  359 (415)
T ss_pred             HHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCc----c---cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            555555554332222110   00  00000 0000    0   11112222  233344556788889999999999999


Q ss_pred             HhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 016969          318 IGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLVGSI  370 (379)
Q Consensus       318 vGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~~si  370 (379)
                      +|+..+..+.++.|...+.|....+.++.+...+.+++++|+..++.-.++.+
T Consensus       360 iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~~  412 (415)
T COG0814         360 IGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLATF  412 (415)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998888543222221113466677888777776666543

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.59  E-value=8.2e-14  Score=135.86  Aligned_cols=292  Identities=11%  Similarity=0.040  Sum_probs=188.3

Q ss_pred             ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969            8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   87 (379)
Q Consensus         8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~   87 (379)
                      +++..+|.|.+++++||+++.++.+...+.+++.+.+|.+..++.+..+++....    .    ..+.+...+++..++.
T Consensus        55 ~p~~~~~~~~~~~~~G~~~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~----~----~~~~~~~~~~~~~v~~  126 (381)
T TIGR00837        55 YPGGASFNTIAKDLLGKTGNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFG----F----PWSARAIVLIFTVLFG  126 (381)
T ss_pred             CCCCCCHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC----C----CccHHHHHHHHHHHHH
Confidence            4457899999999999999999999999999999999999999999998864211    0    1222223333333333


Q ss_pred             HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969           88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  167 (379)
Q Consensus        88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~  167 (379)
                      ++ ..+..|..+.++.+.+...+...++.+...+.+. + .  + ......  .......+...+++...++|++|.+++
T Consensus       127 ~l-~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~~-~-~--~-~~~~~~--~~~~~~~~~~~a~~~~~~~fg~~~~i~  198 (381)
T TIGR00837       127 SF-VWLSTSAVDRITRVLIFGKIIAFALVFSGLLPHV-K-G--D-LLLDVA--LDTSYWPYILSALPVCLTSFGFHGNVP  198 (381)
T ss_pred             HH-HHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c-H--H-HHhcCc--cccccHHHHHHHHHHHHHHHHcccccH
Confidence            43 3456677777777766544332222222222111 1 0  0 000000  001122356788999999999998999


Q ss_pred             HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcccc-------c---cccccCC-CCChHHHHHHHHH
Q 016969          168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPG-------N---LLTGFGF-YEPYWLIDLANAF  236 (379)
Q Consensus       168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~-------~---il~n~~~-~~~~~~~~~~~~~  236 (379)
                      ++.+|++||   +||.+|+...+..++.++|+.+........+.+.-.       +   ....+.. .+..+...++..+
T Consensus       199 ~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~  275 (381)
T TIGR00837       199 SLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELF  275 (381)
T ss_pred             HHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHH
Confidence            999999864   488999999999999999998866655555432111       1   1111110 0122344566677


Q ss_pred             HHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChH-HHH
Q 016969          237 IVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFN-QVL  315 (379)
Q Consensus       237 ~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~-~vl  315 (379)
                      ..+.+..|+.-.....++..++.+++.  +            +    .   ..|.....+..+...++|.+.|+.. ..+
T Consensus       276 ~~~al~tS~~g~~l~~~d~l~~~~~~~--~------------~----~---~~~~~~~~~~~~~pl~~a~~~p~~~~~~l  334 (381)
T TIGR00837       276 SNFALASSFLGVTLGLFDYLADLFKFD--D------------S----K---KGRFKTGLLTFLPPLVFALFYPEGFLYAI  334 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC--c------------c----c---CCCchhhhhhHHhHHHHHHHhhHHHHHHH
Confidence            777788888766666677766555321  0            0    0   1123334444567788899999977 899


Q ss_pred             HHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969          316 GVIGGVIFWPLTIYFPVEMYFKQMN  340 (379)
Q Consensus       316 ~lvGs~~~~~l~fi~P~l~y~~~~~  340 (379)
                      +..| +.++.+.+++|+++++|.||
T Consensus       335 ~~~G-~~~~~~~~~~p~l~~~~~r~  358 (381)
T TIGR00837       335 GYAG-LAATIWAVIIPALLAWKARK  358 (381)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHh
Confidence            9999 88999999999999998654

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.42  E-value=3e-11  Score=117.81  Aligned_cols=291  Identities=15%  Similarity=0.164  Sum_probs=173.7

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      .+++..+|.+++++.+||+++++..+...+..++.+++|..-.++.+++.++...    +.    +.+++.-.+++.++.
T Consensus        60 ~~~~~~~~~~~a~~~lG~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~----~~----~~~~~~~~~~f~~i~  131 (394)
T PF03222_consen   60 NTPEGSSLTSMAEKYLGKKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL----GT----DLSPWLSSLLFTIIF  131 (394)
T ss_pred             hCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc----CC----CCcHHHHHHHHHHHH
Confidence            3457899999999999999999999999999999999999999999999987521    11    122332223333332


Q ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  166 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~  166 (379)
                      -.+.+. .-|.....+.+-....+.. ++++........+.+    .+...  .+...++...+.++|+..+||+.|..+
T Consensus       132 ~~iv~~-g~~~v~~~n~~lv~~~i~~-~~~l~~~~~p~~~~~----~L~~~--~~~~~~~~~~~~~lPv~~~Sf~f~~iv  203 (394)
T PF03222_consen  132 GGIVYF-GTKAVDRINRVLVFGMIIS-FIILVVYLIPHWNPS----NLLDA--PPSPSDWSYILPALPVLVFSFGFHNIV  203 (394)
T ss_pred             HHHHHh-hHHHHHHHHHHHHHHHHHH-HHHHHHHHhhhcCHH----Hhhcc--ccccccHHHHHHHHHHHHHHHHHHhhh
Confidence            222222 1223333332222111111 111111111111100    01110  011223334678999999999999999


Q ss_pred             HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhcc---------cccCcccc--ccccccCCCCChHHHHHH
Q 016969          167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPG--NLLTGFGFYEPYWLIDLA  233 (379)
Q Consensus       167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~v~~--~il~n~~~~~~~~~~~~~  233 (379)
                      |++.+.+++   ++||.+|+...+..+..++|+..  .+.|-+         .-|+++.+  ..+.+..  ++.+...+.
T Consensus       204 Psl~~~~~~---d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~s~~i~~~~  278 (394)
T PF03222_consen  204 PSLVKYLGG---DPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVS--GSPWISILG  278 (394)
T ss_pred             HHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhc--CCcHHHHHH
Confidence            999999985   34788998888888888888764  333311         11111111  1222221  223334456


Q ss_pred             HHHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hH
Q 016969          234 NAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FN  312 (379)
Q Consensus       234 ~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~  312 (379)
                      .++-.+.+.+||-=...-.+|.++..++.  +++                   ...|...-.+..+...++|...|+ +-
T Consensus       279 ~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~r~~~~~ltf~ppl~~a~~~p~~F~  337 (394)
T PF03222_consen  279 SIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSGRLKTWLLTFLPPLIFALLFPNGFL  337 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccchHHHHHHHHHhHHHHHHHCcHHHH
Confidence            66667777777643334556666655521  110                   012333333345567888999997 88


Q ss_pred             HHHHHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969          313 QVLGVIGGVIFWPLTIYFPVEMYFKQMN  340 (379)
Q Consensus       313 ~vl~lvGs~~~~~l~fi~P~l~y~~~~~  340 (379)
                      ..+++.| ...+.+..++|+++.+|.||
T Consensus       338 ~al~~aG-~~~~il~~ilP~~m~~~~r~  364 (394)
T PF03222_consen  338 IALGYAG-IGIAILLGILPALMVWKARK  364 (394)
T ss_pred             HHHHhhc-HHHHHHHHHHHHHHHHHHHc
Confidence            9999999 99999999999999999654

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.35  E-value=1.2e-10  Score=113.47  Aligned_cols=316  Identities=12%  Similarity=0.088  Sum_probs=187.5

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      .+++..++.+++++.+||+++++..++.....+..+.+|..-.|+.+++.++.+..+        +.+.....+.+.++.
T Consensus        60 ~~~~~~~~~~~a~~~LG~~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~  131 (403)
T PRK15132         60 HVPADTGLGTLAKRYLGRYGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVA  131 (403)
T ss_pred             CCCCCCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHH
Confidence            456778999999999999999999999999999999999999999999998653211        122333344444333


Q ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  166 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~  166 (379)
                      -...+. ..|...+.+-+=....++. ++.....+....     +.  ....+.+...+  -...++|++.+||+.|.++
T Consensus       132 ~~iv~~-g~~~v~~~n~~L~~~~ii~-~~~~~~~l~p~~-----~~--~~L~~~~~~~~--~~~~~iPvl~~SFgfh~iI  200 (403)
T PRK15132        132 GGVVCV-GTSSVDLFNRFLFSAKIIF-LVVMLALMMPHI-----HK--VNLLTLPLQQG--LALSAIPVIFTSFGFHGSV  200 (403)
T ss_pred             HHHHhc-cHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc-----CH--HHHhcCCcccc--HHHHHHHHHHHHhhCCccc
Confidence            222222 2233333332211111111 111111111111     10  00100011111  2678999999999999999


Q ss_pred             HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-----cc-----ccccccCCC-CChHHHHHHHH
Q 016969          167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PG-----NLLTGFGFY-EPYWLIDLANA  235 (379)
Q Consensus       167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-----~~-----~il~n~~~~-~~~~~~~~~~~  235 (379)
                      |++.+.+++   +.+|.+|+...+..+..++|+..=......-+.+.     ++     +++..+... +..+...++..
T Consensus       201 psl~~y~~~---~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~  277 (403)
T PRK15132        201 PSIVSYMGG---NIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHL  277 (403)
T ss_pred             HHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHH
Confidence            999999986   34788999988888888888765444444333221     11     223332211 12344455666


Q ss_pred             HHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHHH
Q 016969          236 FIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQV  314 (379)
Q Consensus       236 ~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~v  314 (379)
                      ...+.+..||-=.....+|.++..++.+  +     +              ...|...-.+..+-.+++|...|+ |...
T Consensus       278 fa~~Ai~TSFlGv~lgl~d~l~d~~~~~--~-----~--------------~~~r~~~~~l~flppli~a~~~P~~F~~a  336 (403)
T PRK15132        278 FADLALATSFLGVALGLFDYLADLFQRR--N-----T--------------VGGRLQTGLITFLPPLAFALFYPRGFVMA  336 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHccC--c-----c--------------ccCCchhehhhHHHHHHHHHHhHHHHHHH
Confidence            6666677776433334566665554211  0     0              012334444566788999999997 8889


Q ss_pred             HHHHhhhhhhhhHhhhhhHHHHHhcCcc---hhh--HHHHHHHHHHHHHHHHHHHHH
Q 016969          315 LGVIGGVIFWPLTIYFPVEMYFKQMNIE---AWT--RKWVMLRVFSYVCFIVSTFGL  366 (379)
Q Consensus       315 l~lvGs~~~~~l~fi~P~l~y~~~~~~~---~~~--~~~~~~~~i~~~g~~~~v~gt  366 (379)
                      +++.|. ..+.+.+++|+++-.|.+|.+   +.+  .....+++.+++|++..+.-.
T Consensus       337 l~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i~~~~  392 (403)
T PRK15132        337 LGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVIGIQF  392 (403)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHHHHHH
Confidence            999886 578999999999999865432   221  023345666677766555433

>PRK10483 tryptophan permease; Provisional

Probab=99.24  E-value=1.7e-09  Score=105.12  Aligned_cols=292  Identities=12%  Similarity=0.054  Sum_probs=173.7

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      .+++..++..++|+.+||+|+.+..++.....++.+++|+--.|+.+++.++..  +.       ..+++.-.+++.++.
T Consensus        68 ~~~~g~~~~tma~~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~--~~-------~i~~~~~~llF~~~~  138 (414)
T PRK10483         68 NYRIGSSFDTITKDLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM--SL-------NVPARAAGFGFALLV  138 (414)
T ss_pred             cCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc--CC-------CCcHHHHHHHHHHHH
Confidence            356788999999999999999999999999999999999999999999998641  10       122222233444444


Q ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  166 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~  166 (379)
                      -...+. ..|...+.+-+=....+...++.+. .+....+.+    .+.+.+ ......+.....++|++.++|+.|.++
T Consensus       139 ~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~-~l~~~i~~~----~L~~~~-~~~~~~~~~~~~alPvl~~SFgfh~iI  211 (414)
T PRK10483        139 AFVVWL-STKAVSRMTAIVLGAKVITFFLTFG-SLLGHVQPA----TLFNVA-ESNASYAPYLLMTLPFCLASFGYHGNV  211 (414)
T ss_pred             HHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHH-HHHhhcCHH----HHhccc-cccchhHHHHHHHHHHHHhhccCCCcc
Confidence            334333 2244444442221111111111111 111111100    011100 011112223678999999999999999


Q ss_pred             HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhccc---------ccCccccccccccCCC-CChHHHHHHH
Q 016969          167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYAA---------FGDNTPGNLLTGFGFY-EPYWLIDLAN  234 (379)
Q Consensus       167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~~---------fG~~v~~~il~n~~~~-~~~~~~~~~~  234 (379)
                      |++.+.+++   +.+|.+|+...+..+..++|+..  .+.|-..         -|+++ +..+..+... ++.+...+..
T Consensus       212 Psl~~y~~~---d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~  287 (414)
T PRK10483        212 PSLMKYYGK---DPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLV  287 (414)
T ss_pred             hHHHHHhCc---CHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHH
Confidence            999999985   23688999999999998888773  3333222         12222 1111222110 1223334556


Q ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHH
Q 016969          235 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQ  313 (379)
Q Consensus       235 ~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~  313 (379)
                      ++-.+.+..||-=.....+|.++..++.  +++                   ...|...-.+..+-..++|...|+ |=.
T Consensus       288 ~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~ltflPPl~~al~~P~~Fl~  346 (414)
T PRK10483        288 VFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTALLTFLPPVVGGLLFPNGFLY  346 (414)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehhhHhhHHHHHHHhHHHHHH
Confidence            6666677777643334556666655532  110                   012222222445678889999998 888


Q ss_pred             HHHHHhhhhhhhhHhhhhhHHHHHhcC
Q 016969          314 VLGVIGGVIFWPLTIYFPVEMYFKQMN  340 (379)
Q Consensus       314 vl~lvGs~~~~~l~fi~P~l~y~~~~~  340 (379)
                      -++..|.. ++.+.-++|+++-.|.||
T Consensus       347 AL~yAG~~-~~il~~ilP~lM~~~~Rk  372 (414)
T PRK10483        347 AIGYAGLA-ATIWAAIVPALLARASRK  372 (414)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHh
Confidence            99999966 677888999999999654

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.22  E-value=1.7e-09  Score=105.24  Aligned_cols=336  Identities=10%  Similarity=0.031  Sum_probs=189.5

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      +.++..+|.|++++.+||+++.+..++..+..+..+.+|...+.+.+++.+.+    +-+. +  ..++....+++..++
T Consensus        77 ~~~~~~~i~~v~~~~lG~~g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~----ql~~-~--~~~r~l~slifv~~l  149 (443)
T PRK13629         77 GSNPSGNITETVEEHFGKTGGVVITFLYFFAICPLLWIYGVTITNTFMTFWEN----QLGF-A--PLNRGFVALFLLLLM  149 (443)
T ss_pred             cCCCCCCHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hcCc-C--CccHHHHHHHHHHHH
Confidence            33677899999999999999999999999999999999998887777765432    1111 0  123333333444433


Q ss_pred             HHhccCCCCCchhHHHH---HHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969           87 LILSQAPDFHNIQSLSV---IAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY  162 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~---~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~  162 (379)
                      ....+.-+ |.+-+.+-   ...+..    ++.+...+....+. +-.+.+....++............++|++.|||+.
T Consensus       150 ~~iv~~G~-~~v~kv~~~Lv~~~i~~----l~~l~~~LiP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f  224 (443)
T PRK13629        150 AFVIWFGK-DLMVKVMSYLVWPFIAS----LVLISLSLIPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNF  224 (443)
T ss_pred             HHHHHhhH-HHHHHHHHHHHHHHHHH----HHHHHHHHHHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhc
Confidence            33333322 33323222   222211    11111111111100 00000000000000101112367889999999999


Q ss_pred             chhHHHHHhHhCCC-----CCc--hhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-------ccccccc----cCCC
Q 016969          163 SLILIEIQDTLKSP-----PPA--NQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-------PGNLLTG----FGFY  224 (379)
Q Consensus       163 ~~~~~~i~~~M~~p-----~p~--~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-------~~~il~n----~~~~  224 (379)
                      |+++|++...+|+.     .++  .+|-+++...+..+..++|+..-+..-..-+++.       +.+++..    ++..
T Consensus       225 ~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~  304 (443)
T PRK13629        225 SPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASM  304 (443)
T ss_pred             cccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhc
Confidence            99999988884321     013  5788888888888888877766665555555432       1222222    2210


Q ss_pred             CC------hHHHHHHHHHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHH
Q 016969          225 EP------YWLIDLANAFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYV  298 (379)
Q Consensus       225 ~~------~~~~~~~~~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~  298 (379)
                      ..      .+...+..+...+.+..||-=.....+|.++..+.+...+.+  ++    +.      +.+..+......+.
T Consensus       305 ~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~~--~~----~~------~~~~~~~~~~~~~~  372 (443)
T PRK13629        305 TGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKGD--KT----KV------SLGKLNTISMIFIM  372 (443)
T ss_pred             ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--cc----cc------CHHHHHHHHHHHHH
Confidence            00      123334444455566666643344667777777632000100  00    11      11234555666777


Q ss_pred             HHHHHHHHHccChHHHHHHHhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHHHHHHHHHHH
Q 016969          299 VSVTAIAMSFPYFNQVLGVIGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVCFIVSTFGLV  367 (379)
Q Consensus       299 ~~~~~iA~~iP~l~~vl~lvGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g~~~~v~gt~  367 (379)
                      +.++.+|..=|++=++++-+|+-....+.|++|...-.|....++.+. +..|+++++.|+++...-.|
T Consensus       373 ~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr~-~~~n~fv~~~Gl~~i~~~~~  440 (443)
T PRK13629        373 GSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYRG-RLDNVFVTVIGLLTILNIVY  440 (443)
T ss_pred             HHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhCC-CchhHHHHHHHHHHHHHHHH
Confidence            889999999999999999888888889999999988877543333322 23477777888766544433

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.15  E-value=7.1e-09  Score=100.72  Aligned_cols=296  Identities=12%  Similarity=0.064  Sum_probs=169.9

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      .+++..++..++|+.+||+|+.+..++.....++.+++|+--.|+.+++.++...    +.    +.+++.-.++++.+.
T Consensus        66 ~~~~g~~l~tma~~~LG~~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~----~~----~i~~~~~~llF~~~~  137 (415)
T PRK09664         66 NYPVGSSFNTITKDLIGNTWNIISGITVAFVLYILTYAYISANGAIISETISMNL----GY----HANPRIVGICTAIFV  137 (415)
T ss_pred             cCCCCCCHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc----cC----CCcHHHHHHHHHHHH
Confidence            3567899999999999999999999999999999999999999999999985311    10    122222233444444


Q ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHH-HHHHHhhhHHhhcCCchh
Q 016969           87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMW-LVAQALGDIAFAYPYSLI  165 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~~~faf~~~~~  165 (379)
                      -+..+... +...+.+-+=....+...++.+. ......+..    .+.+.+........+ ....++|++.++|+.|.+
T Consensus       138 ~~~v~~gt-~~vd~~nr~l~~~~ii~f~~~~~-~l~~~i~~~----~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~i  211 (415)
T PRK09664        138 ASVLWISS-LAASRITSLFLGLKIISFVIVFG-SFFFQVDYS----ILRDATSTTAGTSYFPYIFMALPVCLASFGFHGN  211 (415)
T ss_pred             HHHHHhch-hHHHHHHHHHHHHHHHHHHHHHH-HHhhcccHH----HHhcCccccccchHHHHHHHHHHHHHHhhhCCCc
Confidence            44443322 33333332211111111111111 111111100    011100001011112 366799999999999999


Q ss_pred             HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh--hhhhcc---------cccCccccccccccCCCCChHHHHHHH
Q 016969          166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC--GGFGYA---------AFGDNTPGNLLTGFGFYEPYWLIDLAN  234 (379)
Q Consensus       166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~--g~~GY~---------~fG~~v~~~il~n~~~~~~~~~~~~~~  234 (379)
                      +|++.+.+++   +.+|.++++.....+..++|+..  .+.|-.         .-|++++.-+..-....+..+...+..
T Consensus       212 IPsl~~y~~~---d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~  288 (415)
T PRK09664        212 IPSLIICYGK---RKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLL  288 (415)
T ss_pred             chHHHHHhCc---cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHH
Confidence            9999999985   23677777776666666677332  222211         222222221111111002334445666


Q ss_pred             HHHHHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccC-hHH
Q 016969          235 AFIVIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPY-FNQ  313 (379)
Q Consensus       235 ~~~~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~-l~~  313 (379)
                      ++..+.+..||-=.....+|.+...++.  +++                   ...|...-.+..+-..+.|.+.|+ |=.
T Consensus       289 ~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~ltflPPl~~al~~P~gFl~  347 (415)
T PRK09664        289 VFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLLTFLPPALLYLIFPNGFIY  347 (415)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehhhHhhhHHHHHHhhHHHHH
Confidence            6666677777643333556666655522  111                   012222223345678889999998 888


Q ss_pred             HHHHHhhhhhhhhHhhhhhHHHHHhcCc
Q 016969          314 VLGVIGGVIFWPLTIYFPVEMYFKQMNI  341 (379)
Q Consensus       314 vl~lvGs~~~~~l~fi~P~l~y~~~~~~  341 (379)
                      -++..|.. ++.+.-++|+++-.|.||+
T Consensus       348 AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        348 GIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            99999986 6688889999999996543

>TIGR00814 stp serine transporter

Probab=99.12  E-value=2e-09  Score=104.98  Aligned_cols=320  Identities=8%  Similarity=0.018  Sum_probs=186.9

Q ss_pred             CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHh
Q 016969           10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLIL   89 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl   89 (379)
                      +..++.|++++.|||+++.+..+......+..+.+|....++.+.+.+.... +   .+.    +.+....+..+..+-.
T Consensus        64 p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~-~---~~~----p~~~i~~lilv~il~~  135 (397)
T TIGR00814        64 PCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQL-G---TAP----PLRGLLSLALILILVA  135 (397)
T ss_pred             CCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CCC----cHHHHHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999999888886421 1   111    1121222222222222


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHH
Q 016969           90 SQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEI  169 (379)
Q Consensus        90 s~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i  169 (379)
                      ...+..+.+..++-+-....++..++.....+ ...+ .  + .+...|  .......+...+++...+||.+|.++++.
T Consensus       136 iv~~G~~~i~r~~~il~~~~ii~l~~l~~~li-p~~~-~--~-~L~~~p--~~~~~~~~i~~alpv~~~SF~~~~iIssl  208 (397)
T TIGR00814       136 IMSFGEKLLFKIMGPLVFPLVLILVLLSLYLI-PHWN-G--A-NLTTFP--SFNGFLKTLWLTIPVMVFSFNHSPIISSF  208 (397)
T ss_pred             HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcC-H--H-HHhcCC--cccchHHHHHHHHHHHHHHHHccccchHH
Confidence            23335565655554433221111111111111 1110 0  0 011111  01122345788999999999999999998


Q ss_pred             HhH----hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc-----ccc--cccccCCC-CChHHHHHHHHHH
Q 016969          170 QDT----LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT-----PGN--LLTGFGFY-EPYWLIDLANAFI  237 (379)
Q Consensus       170 ~~~----M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v-----~~~--il~n~~~~-~~~~~~~~~~~~~  237 (379)
                      ..+    .++|+.+.+|.+|+...+..+..++|+..-+..-...+.+.     ++|  ++..+... +..+...+....-
T Consensus       209 ~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~  288 (397)
T TIGR00814       209 AISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVA  288 (397)
T ss_pred             HHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHH
Confidence            733    44222225778888888888888888777666666666433     122  12211100 1223333444555


Q ss_pred             HHHHHHhhcccccchHHHHHHHHHhhCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHH
Q 016969          238 VIHLVGGYQVYSQPIFAHFEKWICEKFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGV  317 (379)
Q Consensus       238 ~i~~~~sypl~~~p~~~~ie~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~l  317 (379)
                      .+.+..||-=...-.++.++..+.+.. +.+  ++    +.      +++..+......+.+.++.+|..=|++=++++-
T Consensus       289 ~~Ai~tSFlG~~lg~~e~l~~l~~~~~-~~~--~~----~~------~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~  355 (397)
T TIGR00814       289 IVAISKSFFGHYLGAREGLNGIVLNSL-KMK--GK----KI------NIRKLNRAIAIFIVLTTWIVAYINPSILSFIEA  355 (397)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHh-ccc--cc----cc------CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            556666665555677888888763211 100  00    11      112334455566778899999999999999997


Q ss_pred             HhhhhhhhhHhhhhhHHHHHhcCcchhhHHHHHHHHHHHHH
Q 016969          318 IGGVIFWPLTIYFPVEMYFKQMNIEAWTRKWVMLRVFSYVC  358 (379)
Q Consensus       318 vGs~~~~~l~fi~P~l~y~~~~~~~~~~~~~~~~~~i~~~g  358 (379)
                      +|+-..+.+.|++|...-.|....++.+.++ .|+++++.|
T Consensus       356 ~~gp~~a~i~~~~p~~~~~~v~~l~~~~~~~-~~~fv~~~g  395 (397)
T TIGR00814       356 LGGPIIAMILFLMPMYAIYKVPALKKYRGRI-SNVFVTVIG  395 (397)
T ss_pred             hhHHHHHHHHHHHHHHHHHccHHHHHhCCCc-chheeEeee
Confidence            7888888999999998887754333332222 355454444

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK10655 potE putrescine transporter; Provisional

Probab=98.49  E-value=2.4e-05  Score=77.76  Aligned_cols=56  Identities=11%  Similarity=0.128  Sum_probs=47.9

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  206 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  206 (379)
                      ++..++....|+|.|-......-+|+|||   +|+.+|++..+...+.++|+.......
T Consensus       190 ~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        190 AVGSSIAMTLWAFLGLESACANSDAVENP---ERNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHhhhhhhhhhHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677888899999999999999999998   278999999999999999988665433

>PRK11021 putative transporter; Provisional

Probab=98.37  E-value=0.0002  Score=70.56  Aligned_cols=63  Identities=17%  Similarity=0.358  Sum_probs=52.1

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh--hcccccC
Q 016969          146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF--GYAAFGD  211 (379)
Q Consensus       146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~--GY~~fG~  211 (379)
                      +.++..++....|+|.|-......-+|+|||   +|+.+|+...+...+.++|+...+.  +...++|
T Consensus       176 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~k~iPrAi~~~~~~~~~lYil~~~~~~~~~~~~~  240 (410)
T PRK11021        176 WSGLFAALGVMFWCFVGIEAFAHLASEFKNP---ERDFPRALMIGLLLAGLVYWACTVVVLHFPAYGD  240 (410)
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            3457788999999999999999999999998   2789999999999999999887654  3444444

>PRK10746 putative transport protein YifK; Provisional

Probab=98.29  E-value=7.4e-05  Score=74.83  Aligned_cols=55  Identities=18%  Similarity=0.074  Sum_probs=45.5

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      .++..++....|+|.|-......-+|+|||   +|+.+|+...+.....++|......
T Consensus       200 ~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        200 KGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346788899999999999999999999998   3789999888877777788765443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=98.27  E-value=0.00014  Score=72.53  Aligned_cols=56  Identities=9%  Similarity=0.134  Sum_probs=48.2

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  206 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  206 (379)
                      ++..++....|+|.|-......-+|+|||   +|+.+|+...+..++.++|..+.+.--
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P---~r~iPrai~~s~~i~~v~Y~l~~~~~~  247 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSSTAIM  247 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCc---ccchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567888899999999999999999998   378999999999999999988877633

>PRK10249 phenylalanine transporter; Provisional

Probab=98.26  E-value=0.00018  Score=71.99  Aligned_cols=55  Identities=15%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  205 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  205 (379)
                      ++..++....|+|.|-......-+|+|||   +|+.+|+...++....++|......-
T Consensus       210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P---~k~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        210 GLILSLAVIMFSFGGLELIGITAAEARDP---EKSIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788899999999999999999999997   37899999999998899997754433

>TIGR00908 2A0305 ethanolamine permease

Probab=98.24  E-value=9e-05  Score=73.78  Aligned_cols=176  Identities=10%  Similarity=-0.026  Sum_probs=96.0

Q ss_pred             cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      ...-..-.-+++.+|+....++.....+.......++....++.+..+++.             .+...+.++...+ +-
T Consensus        68 P~~Gg~y~~~~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~-~~  133 (442)
T TIGR00908        68 PTAGGGYGFARRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIV-FI  133 (442)
T ss_pred             CCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHH-HH
Confidence            333444556688999998888888888877777777777777777665531             0111111111111 11


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecC-CcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGN-GFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILI  167 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~  167 (379)
                      +.-.+..|..+.++.+..+..++.+++.++... ...+. +...+...+..... .....+.+.++....|+|.|.....
T Consensus       134 ~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~af~G~e~~~  211 (442)
T TIGR00908       134 GINILGVGEAAKLEFVVTAVAIIALGVFIGAMV-PHFDSANLFNGPQTGASSFL-PGAYVGVFAAIPFAIWFFLAVEGVA  211 (442)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-ccCCHHHhccCCccCCCCCC-CccHHHHHHHHHHHHHHHHHHHHHH
Confidence            222233444444433322221111111111111 11000 00000000000001 1122356778888899999999999


Q ss_pred             HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhh
Q 016969          168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  203 (379)
Q Consensus       168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~  203 (379)
                      ..-+|+|||   +|+.+|+...++.++..+|+..-+
T Consensus       212 ~~aeE~k~P---~r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       212 MAAEETKNP---KRDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHhcCc---ccccCHHHHHHHHHHHHHHHHHHH
Confidence            999999998   268899999998888888876644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR00909 2A0306 amino acid transporter

Probab=98.24  E-value=9.3e-05  Score=73.35  Aligned_cols=184  Identities=13%  Similarity=0.081  Sum_probs=108.1

Q ss_pred             ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccc---cCchhhH--HH
Q 016969            8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEY---SDTYYML--IF   82 (379)
Q Consensus         8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~--i~   82 (379)
                      +++.-..-+-.++.+||+....+.....+.....+.++....++.+..+++...  .+.. ..+..   +...+.+  +.
T Consensus        63 ~p~~Gg~y~~~~~~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~i~  139 (429)
T TIGR00909        63 LPVAGSPYTYAYEAMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVG--LDLP-AVLTAKPGNGGVFNLPALL  139 (429)
T ss_pred             cCCCCcceeeHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--ccCc-hhhhcCCcccccccHHHHH
Confidence            333344556677899999999999888887777777888888888877775310  0000 00000   0111111  11


Q ss_pred             HHHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969           83 GAVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY  162 (379)
Q Consensus        83 ~~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~  162 (379)
                      ..++.-....+..|..+.++.+.....+...++.+...+.+. +.+  +  ....   . +....+...++....|+|.|
T Consensus       140 ~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~-~~~--~--~~~~---~-~~~~~~~~~~~~~~~~af~G  210 (429)
T TIGR00909       140 IVLFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHF-ASN--N--YTPF---M-PMGFGGVGAATALVFFAFIG  210 (429)
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhC-cHH--h--cCCC---C-CCcHHHHHHHHHHHHHHHhh
Confidence            122222333445666666666555443322221122222211 111  1  1111   1 11223567788889999999


Q ss_pred             chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969          163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  206 (379)
Q Consensus       163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  206 (379)
                      ........+|+|||   +|+.+|+...++.++.++|+.......
T Consensus       211 ~e~~~~~~~E~~~p---~r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       211 FEAISTAAEEVKNP---ERDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHhhHHhccCc---cccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999997   268899999999999999998876544

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=98.21  E-value=0.00024  Score=70.68  Aligned_cols=61  Identities=13%  Similarity=0.079  Sum_probs=51.9

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccc
Q 016969          146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAF  209 (379)
Q Consensus       146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~f  209 (379)
                      ..++..++....|+|.|-...-..-+|+|||   +|+.+|+...+...+.++|+...+.-....
T Consensus       186 ~~~~~~a~~~~~faf~G~E~~~~~a~E~knP---~r~iPrAi~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        186 GHAIIKSILLCLWAFVGVESAAVSTGMVKNP---KRTVPLATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhhCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4567888899999999999999999999998   378999999999999999988877654333

>PRK10238 aromatic amino acid transporter; Provisional

Probab=98.20  E-value=0.00023  Score=71.17  Aligned_cols=175  Identities=13%  Similarity=0.026  Sum_probs=91.5

Q ss_pred             ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969            8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   87 (379)
Q Consensus         8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~   87 (379)
                      +...-++.+-+++.+|+...+.+.....+.....+.+.....++.++...+.             .+...+..++..+..
T Consensus        72 ~P~aGg~y~~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~  138 (456)
T PRK10238         72 EPVAGSFSHFAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVIN  138 (456)
T ss_pred             cCCCCCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHH
Confidence            4444556666788999999999999988887777777766666655433210             111222222211111


Q ss_pred             HhccCCCCCchhHHHHHHHHHHHHHHH--Hhhhhe-eeeeecCCcccccccc-cccCchhhH-HHHHHHHhhhHHhhcCC
Q 016969           88 ILSQAPDFHNIQSLSVIAAVMSFAYSF--IGFGLG-VAKVIGNGFVMGSFSG-VSTTTSIEK-MWLVAQALGDIAFAYPY  162 (379)
Q Consensus        88 pls~~r~l~~l~~~S~~~~~~~~~~~~--i~~~~~-i~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~g~~~faf~~  162 (379)
                       ..-.+..|..+.++.+..+..+...+  +++.+. +.....++..  .... .+.....++ ..++..+++...|+|.|
T Consensus       139 -~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G  215 (456)
T PRK10238        139 -AINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQA--TVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGG  215 (456)
T ss_pred             -HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc--cccccCCCCCCccccHHHHHHHHHHHHHHhcC
Confidence             11112333343333332222111111  111111 1111111100  0000 000000111 22455677888999999


Q ss_pred             chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhh
Q 016969          163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFC  201 (379)
Q Consensus       163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~  201 (379)
                      -.......+|+|||   +|+.+|+...++....+.|+..
T Consensus       216 ~e~~~~~aeE~knP---~r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        216 LELVGITAAEADNP---EQSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999997   3689999887777777777554

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=98.18  E-value=0.00013  Score=72.19  Aligned_cols=184  Identities=15%  Similarity=0.069  Sum_probs=105.9

Q ss_pred             ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--HH
Q 016969            8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--AV   85 (379)
Q Consensus         8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i   85 (379)
                      +.+.-..-+-+++++||+...+......+.....+.++....++.+.+.+..   +..       .+.....++..  .+
T Consensus        58 ~p~~GG~y~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------~~~~~~~~i~~~~~~  127 (426)
T PF13520_consen   58 YPSAGGIYVWVSRAFGPFWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP---DLN-------PSPWPQFLIAIILIL  127 (426)
T ss_dssp             TTSSTTHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG---GGT-------CSHHHHHHHHHHHHH
T ss_pred             CCCcCeeeehhhhcccccchhcccceeEEEeeccccccccchhhhhhhcccc---ccc-------cccchheeeeecccc
Confidence            4555666677888999998888888888888877777777776665544321   000       00111121111  22


Q ss_pred             HHHhccCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccc-cccccCchhhHHHHHHHHhhhHHhhcC
Q 016969           86 QLILSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSF-SGVSTTTSIEKMWLVAQALGDIAFAYP  161 (379)
Q Consensus        86 ~~pls~~r~l~~l~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~g~~~faf~  161 (379)
                      ..-..-.+..|..++++....+..++ ..++.+...+.....++..  +... ...|  ...+   ..+.+++...|+|.
T Consensus       128 ~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~  202 (426)
T PF13520_consen  128 LFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFP--SGWP---GFLAGFSVAFFAFS  202 (426)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSSC--SSSS---HHHHHHHHHGGGGT
T ss_pred             cceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecccccccccccccccCC--cccc---chhhHHHHHHhhcc
Confidence            22333344555666655555444331 1112222222221111100  0000 0011  1111   25678888999999


Q ss_pred             CchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969          162 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  211 (379)
Q Consensus       162 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  211 (379)
                      |-.......+|+||     |+.+|+...++..+.++|......-....++
T Consensus       203 G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  203 GFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             TTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             cccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccc
Confidence            99999999999874     7899999999999999999987666655554

...

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=98.17  E-value=0.00051  Score=69.07  Aligned_cols=179  Identities=9%  Similarity=0.033  Sum_probs=98.3

Q ss_pred             CHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--HHHhc
Q 016969           13 DKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--QLILS   90 (379)
Q Consensus        13 sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~~pls   90 (379)
                      ..-+-+++.+||+....+.............++.....+.+..+.+.. .+    +     +.....+....+  ..-..
T Consensus        74 G~y~y~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~-~~----~-----~~~~~~~~~~~~~~~~~~l  143 (473)
T TIGR00905        74 GIYAYAREGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLF-GS----G-----NPVPSILGASVLLWVFTFL  143 (473)
T ss_pred             ChhhhHHhHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cC----C-----CcHHHHHHHHHHHHHHHHH
Confidence            344566899999999988888776655556666666666666665421 00    0     011111111111  12223


Q ss_pred             cCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchh-hHHHHHHHHhhhHHhhcCCchhHHHH
Q 016969           91 QAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSI-EKMWLVAQALGDIAFAYPYSLILIEI  169 (379)
Q Consensus        91 ~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~faf~~~~~~~~i  169 (379)
                      -.+..|..+.+..+.....+...++.+...+... +.+.......+. ..+.. .....+..++....|+|.|-......
T Consensus       144 n~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~  221 (473)
T TIGR00905       144 VLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGH-DVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVS  221 (473)
T ss_pred             HHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCcc-CCCcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            3445555555555444332221111111111111 111000000000 00111 12234667888899999999999999


Q ss_pred             HhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcc
Q 016969          170 QDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYA  207 (379)
Q Consensus       170 ~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~  207 (379)
                      .+|+|| +   |+.+|+...+..++.++|+........
T Consensus       222 a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       222 SGRAKN-K---SDVGKATVLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             HHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999996 2   789999999999999999887765443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=98.14  E-value=0.00035  Score=70.15  Aligned_cols=59  Identities=10%  Similarity=0.119  Sum_probs=48.5

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  210 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  210 (379)
                      ++..++....|+|.|-.....+.+|.||+    |+.+|+...+...+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            45578888999999998888888888853    789999999999999999988876654444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=98.13  E-value=0.00093  Score=67.24  Aligned_cols=176  Identities=10%  Similarity=0.059  Sum_probs=97.3

Q ss_pred             CCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhcc
Q 016969           12 PDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQ   91 (379)
Q Consensus        12 ~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~   91 (379)
                      -.|.+-+++.+|+.....+.....+.....+.+.....+..+....+             ..+...|..+... ++-+.-
T Consensus        68 G~~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~-~~~~in  133 (478)
T TIGR00913        68 GSFATYASRFVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYV-FIVIIN  133 (478)
T ss_pred             CCHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHH-HHHHHH
Confidence            36888899999999998888888777766666666666555432211             0112223322211 111223


Q ss_pred             CCCCCchhHHHHHHHHHHHHHH--HHhhhheeeeeec-CCc-ccc----cccccccCchhhHHHHHHHHhhhHHhhcCCc
Q 016969           92 APDFHNIQSLSVIAAVMSFAYS--FIGFGLGVAKVIG-NGF-VMG----SFSGVSTTTSIEKMWLVAQALGDIAFAYPYS  163 (379)
Q Consensus        92 ~r~l~~l~~~S~~~~~~~~~~~--~i~~~~~i~~~~~-~~~-~~~----~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~  163 (379)
                      .+..|..+.++.+.+..-+...  ++++++....... +.. ...    ...++++........++..++....|+|.|-
T Consensus       134 ~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~  213 (478)
T TIGR00913       134 LFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGT  213 (478)
T ss_pred             HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccH
Confidence            3445555444433321111100  1111111111100 000 000    0011110000112445777888899999999


Q ss_pred             hhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          164 LILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       164 ~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      ......-+|+|||   +|+.+|++..+...+.++|....+.
T Consensus       214 e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       214 ELVALTAGEAANP---RKSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999997   3789999999999999999987543

>PRK15049 L-asparagine permease; Provisional

Probab=98.11  E-value=0.00051  Score=69.54  Aligned_cols=58  Identities=16%  Similarity=0.125  Sum_probs=46.2

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA  208 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~  208 (379)
                      ..+.++....|+|.|-......-+|+|||   +|+.+|++..++..+.++|+.....-...
T Consensus       221 ~~~~~~~~~~faf~G~e~i~~~aeE~knP---~r~iPrAi~~~~~~i~~~yi~~~~~~~~~  278 (499)
T PRK15049        221 PALVLIQGVVFAFASIEMVGTAAGECKDP---QTMVPKAINSVIWRIGLFYVGSVVLLVML  278 (499)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            35566778899999999999999999998   36799999988888888887765544333

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=98.08  E-value=0.00098  Score=66.96  Aligned_cols=56  Identities=16%  Similarity=0.138  Sum_probs=46.1

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  206 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  206 (379)
                      ++..++....|+|.|-......-+|+|||   +|+.+|+...+...+.+.|......-+
T Consensus       212 ~~~~~~~~~~~af~G~e~~~~~a~E~knP---~r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        212 GFFAGFQIAVFAFVGIELVGTTAAETKDP---EKSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHhcHHHHHHHHHHhcCH---hhHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            47788999999999999999999999997   368999887777777888876665543

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=98.07  E-value=0.00025  Score=70.64  Aligned_cols=56  Identities=14%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969          147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  205 (379)
Q Consensus       147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  205 (379)
                      .++..++....|+|.|-.......+|+|||   +|+.+|++..++.++.++|......-
T Consensus       195 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P---~r~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        195 MALLAGISATSWSYTGMASICYMTGEIKNP---GKTMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHhhHHHhcCc---cccchHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999998   37899999999999999998876543

>PRK10580 proY putative proline-specific permease; Provisional

Probab=98.04  E-value=0.00059  Score=68.27  Aligned_cols=54  Identities=19%  Similarity=0.157  Sum_probs=44.3

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      +...++....|+|.|-.......+|+|||   +|+.+|+...+...+.++|......
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56778889999999999999999999998   3678998887777777777666443

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=98.04  E-value=0.00062  Score=68.03  Aligned_cols=183  Identities=11%  Similarity=0.023  Sum_probs=98.4

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH-
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV-   85 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i-   85 (379)
                      .+...-...+-+++.+|++...++...........+.+.....++.++.+.+.             .  ..|.....++ 
T Consensus        71 ~~P~~Gg~~~~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~~~~~~~  135 (452)
T TIGR01773        71 ANPDTGSFSTYADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------I--PLWLFSLILTI  135 (452)
T ss_pred             hcCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------C--cHHHHHHHHHH
Confidence            34455567788899999999889888887777666666666666655543311             1  1232211111 


Q ss_pred             HHHhccCCCCCchhHHHHHHHHHHHHHH--HHhhhhe-eeeeecCCccccccccccc-CchhhH-HHHHHHHhhhHHhhc
Q 016969           86 QLILSQAPDFHNIQSLSVIAAVMSFAYS--FIGFGLG-VAKVIGNGFVMGSFSGVST-TTSIEK-MWLVAQALGDIAFAY  160 (379)
Q Consensus        86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~--~i~~~~~-i~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~g~~~faf  160 (379)
                      +.-..-.+..|..+.+.....+.-+...  +++++.. ......... ........+ ....++ ..++..++....|+|
T Consensus       136 ~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af  214 (452)
T TIGR01773       136 VLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSE-VSGFSNLTGKGGFFPNGIGAVLLAILVTMFSF  214 (452)
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCccccccCCCCcCcccHHHHHHHHHHHHHHh
Confidence            1112222334444433333222111111  1111111 111110000 000000000 001112 234778899999999


Q ss_pred             CCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc
Q 016969          161 PYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA  208 (379)
Q Consensus       161 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~  208 (379)
                      .|-......-+|+|||   +|+.+|+...++.....+|+...+.....
T Consensus       215 ~G~e~~~~~a~E~k~P---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~  259 (452)
T TIGR01773       215 MGTEIVTIAAAESSNP---IKSITRATNSVIWRIIVFYLGSIFIVVAL  259 (452)
T ss_pred             ccHHHHhHHHHhhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHHeeE
Confidence            9999999999999997   36899998888888888888765544333

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=98.02  E-value=0.00062  Score=68.46  Aligned_cols=53  Identities=9%  Similarity=0.042  Sum_probs=42.9

Q ss_pred             hHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969          155 DIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  210 (379)
Q Consensus       155 ~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  210 (379)
                      .+.|+|.|-......-+|+|||   +|+.+|+...+...+.++|....+.-...-+
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~  254 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNP---DKNYPIAILIAALGTVLIFVLGTLAIAFIIP  254 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4578999999999999999998   3789999999999999999876554433333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=98.01  E-value=0.00033  Score=68.06  Aligned_cols=187  Identities=14%  Similarity=0.107  Sum_probs=119.4

Q ss_pred             cCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH--H
Q 016969            9 FYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV--Q   86 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i--~   86 (379)
                      ....|+.|.+++.+|++..+++...=..+-.-++++-+.-++..++..++.             .+++.+.+....+  .
T Consensus        74 p~~gSF~~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~  140 (462)
T COG1113          74 PVSGSFSDYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLA  140 (462)
T ss_pred             CCCCcHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999888887777642             2233333333222  2


Q ss_pred             HHhccCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCch-----hhHHHHHHHHhhhHHhhc
Q 016969           87 LILSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTS-----IEKMWLVAQALGDIAFAY  160 (379)
Q Consensus        87 ~pls~~r~l~~l~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~faf  160 (379)
                      +=+...|...++. |++++=.+..+.+.++.+++ +..+..++..   ..+++...+     +....+++.++-+.+|||
T Consensus       141 ~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~l-l~~g~~~~~~---~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf  216 (462)
T COG1113         141 VNLISVKVFGELEFWFALIKVAAIIAFIVVGIVL-LFGGFGGGGG---AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAF  216 (462)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCC---CccccccccCCCcCCCchHHHHHHHHHHHHHH
Confidence            3455667777665 55655544333322222222 2233333321   122221111     122345788999999999


Q ss_pred             CCchhHHHHHhHhCCCCCchhhhhhhhH-----HHHHHHHHHHhhhhhhhcccccCcccc
Q 016969          161 PYSLILIEIQDTLKSPPPANQTMKKAST-----MSIITTTIFYLFCGGFGYAAFGDNTPG  215 (379)
Q Consensus       161 ~~~~~~~~i~~~M~~p~p~~~~~~~~~~-----~s~~~~~~~Y~~~g~~GY~~fG~~v~~  215 (379)
                      ++...+=---.|-|||+   |..+|+.+     ....-...+.....+.-+-.++++.++
T Consensus       217 ~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SP  273 (462)
T COG1113         217 GGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSP  273 (462)
T ss_pred             hhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCc
Confidence            99998877789999983   55666554     444555566678888888888775444

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=98.01  E-value=0.0011  Score=66.05  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=47.1

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      ++..++....|+|.|-.......+|+|||   +|+.+|+...++..+.++|+...+.
T Consensus       182 ~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        182 AVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999998   3789999988888888889876554

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=98.01  E-value=0.00071  Score=69.39  Aligned_cols=179  Identities=9%  Similarity=-0.001  Sum_probs=97.8

Q ss_pred             hhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhcccc-C---CCCccccccCc-hhhHHHHHHHHHhccCC
Q 016969           19 HGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHR-E---GHEAACEYSDT-YYMLIFGAVQLILSQAP   93 (379)
Q Consensus        19 ~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~-~---~~~~~~~~~~~-~~~~i~~~i~~pls~~r   93 (379)
                      ++++|+...+++.....+.....+.+.....++.+..++....... .   +.+.+ ..... .+..+..++++-....+
T Consensus       100 ~~~~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~-~l~~~~~~~a~~ii~l~~~ln~~  178 (557)
T TIGR00906       100 YVTVGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYD-GLAEYPDFFAVCLILLLAVLLSF  178 (557)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCC-cccccchHHHHHHHHHHHHHHHh
Confidence            4668998888888888776665555555555666666553200000 0   00000 01111 11111112222233446


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccc---cccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHH
Q 016969           94 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSF---SGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQ  170 (379)
Q Consensus        94 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~  170 (379)
                      ..|..++++.+..+..+...++.++.++.....+   +.+.   .+.++..+ ....+.+.+.....|+|.|-......-
T Consensus       179 Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~---~~~~~~~~~~~~f~p-~g~~g~l~g~~~~~faf~Gfd~v~~~a  254 (557)
T TIGR00906       179 GVKESAWVNKIFTAINILVLLFVIIAGFTKADVA---NWSITEEKGAGGFMP-YGFTGVLSGAATCFFAFIGFDAIATTG  254 (557)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCch---hccccccccCCCCCC-cchHHHHHHHHHHHHHHhhHHHHHHhH
Confidence            6777766666554433322222222222221111   1110   00000011 122357788889999999999999999


Q ss_pred             hHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969          171 DTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  205 (379)
Q Consensus       171 ~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  205 (379)
                      +|+|||   +|+.+++...++.++.++|..+.+.-
T Consensus       255 eE~knP---~r~iP~aii~sl~i~~vlY~lv~~~l  286 (557)
T TIGR00906       255 EEVKNP---QRAIPIGIVTSLLVCFVAYFLMSAAL  286 (557)
T ss_pred             HhccCc---cccccHHHHHHHHHHHHHHHHHHHHH
Confidence            999998   36899999999999999998876543

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.99  E-value=0.0011  Score=66.76  Aligned_cols=56  Identities=13%  Similarity=0.124  Sum_probs=47.4

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969          147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  205 (379)
Q Consensus       147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  205 (379)
                      .++..++....|+|.|-......-+|+|||   +|+.+|+...+...+.++|+...+.-
T Consensus       206 ~~~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        206 LPILMTMVAVNFAFSGTELIGIAAGETENP---AKVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456677778899999999999999999998   37899999999998899998876543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.94  E-value=0.0024  Score=64.33  Aligned_cols=51  Identities=8%  Similarity=0.012  Sum_probs=39.6

Q ss_pred             HHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhh
Q 016969          147 WLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF  200 (379)
Q Consensus       147 ~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~  200 (379)
                      +....++....|+|.|-......-+|+|||   +|+.+|++..+..++.+++..
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~  267 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFC  267 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHH
Confidence            345555666779999999999999999998   378999998888776654433

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.88  E-value=0.0062  Score=66.05  Aligned_cols=179  Identities=15%  Similarity=0.041  Sum_probs=95.0

Q ss_pred             HhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccCCCCC
Q 016969           17 ASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH   96 (379)
Q Consensus        17 l~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~   96 (379)
                      ..++++|+.....+.++....+..++..|.+-+++.+..+++...... . .++ ....+.+.++..++ +-+...+..+
T Consensus       148 yisralGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~-~-~~~-~~~~~iia~i~l~l-l~~In~~Gvk  223 (953)
T TIGR00930       148 LISRSLGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKI-M-VDP-INDIRIYGTVTVVV-LLGISFAGME  223 (953)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-c-cCc-cccchHHHHHHHHH-HHHHHHhhHH
Confidence            346778888888888888888888888999999999888775311000 0 000 00112121111111 1112222334


Q ss_pred             chhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-----c--CchhhHHHH-HHHHhhhHHhhcCCchhHHH
Q 016969           97 NIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-----T--TTSIEKMWL-VAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        97 ~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-----~--~~~~~~~~~-~~~~~g~~~faf~~~~~~~~  168 (379)
                      ..+.+..+-++..++.++..++..+......+.  ....++.     +  .+..+...+ ++..++++.+||.|-.....
T Consensus       224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~--~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan  301 (953)
T TIGR00930       224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPA--KGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGAN  301 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCc--cceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence            333333332222111111111111111000000  0000000     0  001111112 56677888889999888889


Q ss_pred             HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      +-.|+|||   +++.+++...++.+++++|+++.+.
T Consensus       302 ~sgElKnP---~r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       302 ISGDLKDP---QKAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHhccCh---hhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998   3789999999999999999998763

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.79  E-value=0.00099  Score=65.66  Aligned_cols=290  Identities=14%  Similarity=0.091  Sum_probs=143.3

Q ss_pred             hhhcCcCcchhhHHHHH-HHHhhhhheehhhhhhh-HHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccCCCCC
Q 016969           19 HGFSGKTNAWACSFFVH-VGLYGTAIAYTVTSAIS-MRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQAPDFH   96 (379)
Q Consensus        19 ~~~~G~~~~~~~~i~~~-~~~~g~~v~yli~~~~~-l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~r~l~   96 (379)
                      .++||+.........-. +..-..+..+-+.+++. ++..++ .          |..++. ..-..+..++-+...+|..
T Consensus        85 ~~afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-~----------c~~p~~-~~~lla~~~l~~lt~~n~~  152 (479)
T KOG1287|consen   85 SEAFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-L----------CDVPRV-ASKLLAAALLVLLTLINSF  152 (479)
T ss_pred             HHHhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-C----------CCCchH-HHHHHHHHHHHHHHHHhhh
Confidence            35677754433333333 33333435566666665 444433 1          222222 2223344444444555777


Q ss_pred             chhHHHHHHHHHHHH---HHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHHHHhHh
Q 016969           97 NIQSLSVIAAVMSFA---YSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIEIQDTL  173 (379)
Q Consensus        97 ~l~~~S~~~~~~~~~---~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~i~~~M  173 (379)
                      .+++.+.+-.++++.   .+.++++..++....+..++.+..+..  ....+.-+...++=.-.|||.|=..+=-+-+|+
T Consensus       153 ~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~--g~~~~~g~i~lafysglfa~~GWd~lN~vteEi  230 (479)
T KOG1287|consen  153 SVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFE--GSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEI  230 (479)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccc--cCcCchHHHHHHHHHhhhcccCchhhccchHhh
Confidence            777666655554432   222223333443322221111000011  011122235666777788999988777788999


Q ss_pred             CCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccc------cCCC-CChHHHHHHHHHHHHHHHHhhc
Q 016969          174 KSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG------FGFY-EPYWLIDLANAFIVIHLVGGYQ  246 (379)
Q Consensus       174 ~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n------~~~~-~~~~~~~~~~~~~~i~~~~syp  246 (379)
                      |||   +|+++++...|+.++++.|+.+-+..+-+--   .++++.+      +.+. .+.+. -..-+++.++.+++.-
T Consensus       231 knP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n  303 (479)
T KOG1287|consen  231 KNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLN  303 (479)
T ss_pred             cCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhh
Confidence            998   3789999999999999999999886665443   2233222      1100 01111 2233344444444432


Q ss_pred             ccccchHHHHHHHHHh-hCCCCCCCCcccccCCCCCCcCCCchhHHHHHHHHHHHHHHHHHHccChHHHHHHHhhhhhhh
Q 016969          247 VYSQPIFAHFEKWICE-KFPENGFLNNEFFLKPPLMPAFRWNPLRLCFRTVYVVSVTAIAMSFPYFNQVLGVIGGVIFWP  325 (379)
Q Consensus       247 l~~~p~~~~ie~~~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~r~~~~~~~~~iA~~iP~l~~vl~lvGs~~~~~  325 (379)
                      -.++.....+...-.+ ..|+. +..+ +         .+.+.-+  ...++.....++..++.|++.+++.++=.-...
T Consensus       304 ~~ifs~SR~~~~~areG~LP~~-~s~i-~---------~~~~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~  370 (479)
T KOG1287|consen  304 SVIFSSSRLFYAGAREGHLPAF-FSMI-S---------VRRFTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLF  370 (479)
T ss_pred             hHHHHHHHHHHHHHHccCccHH-HHhh-c---------CCCCCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            1111111111111100 01110 0000 0         0000111  112233444555566779999999998877777


Q ss_pred             hHhhhhhHHHHHhcCcc
Q 016969          326 LTIYFPVEMYFKQMNIE  342 (379)
Q Consensus       326 l~fi~P~l~y~~~~~~~  342 (379)
                      ..+.+=+++++|.++++
T Consensus       371 ~~l~~~gll~lR~k~p~  387 (479)
T KOG1287|consen  371 RGLSMAGLLWLRWKHPP  387 (479)
T ss_pred             HHHHHHHHHHHHhhCCC
Confidence            88888889999976544

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.71  E-value=0.0031  Score=63.91  Aligned_cols=58  Identities=19%  Similarity=0.133  Sum_probs=49.6

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhc
Q 016969          146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGY  206 (379)
Q Consensus       146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY  206 (379)
                      ..++..++....|+|.|-.......+|+|||   +|+.+|+...+...+.++|+...+.-.
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP---~r~iPrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNP---YRTLPIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCc---hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778889999999999999999999997   378999999999999999999865443

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=97.69  E-value=0.002  Score=65.29  Aligned_cols=51  Identities=14%  Similarity=0.025  Sum_probs=41.2

Q ss_pred             HHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhh
Q 016969          150 AQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGG  203 (379)
Q Consensus       150 ~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~  203 (379)
                      ...+..+.|+|.|-......-+|+|||   +|+++|++..++.++.++|....+
T Consensus       197 ~~~~~~~~faf~G~E~~a~~a~E~knP---~r~~PrAi~~~~i~~~~l~~l~~~  247 (507)
T TIGR00910       197 LVVFVAFIGAYMGVEASASHINELENP---GRDYPLAMILLMIAAICLDAIGGF  247 (507)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHccCC---cccccHHHHHHHHHHHHHHHHHHH
Confidence            334445689999999999999999998   378999999998888888876443

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PRK10836 lysine transporter; Provisional

Probab=97.48  E-value=0.023  Score=57.42  Aligned_cols=54  Identities=11%  Similarity=0.153  Sum_probs=44.7

Q ss_pred             HHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhh
Q 016969          149 VAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFG  205 (379)
Q Consensus       149 ~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~G  205 (379)
                      .........|+|.|-......-+|+|||   +|+.+|+...++..+.++|......-
T Consensus       207 ~~~~~~~~~faf~G~e~~~~~a~E~knP---~r~iPrAi~~~~~~v~~~Yvl~~~~~  260 (489)
T PRK10836        207 MIGVAMIVGFSFQGTELIGIAAGESEDP---AKNIPRAVRQVFWRILLFYVFAILII  260 (489)
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445555679999999999999999998   37899999999999999998776543

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=97.44  E-value=0.013  Score=56.60  Aligned_cols=176  Identities=12%  Similarity=0.088  Sum_probs=101.2

Q ss_pred             CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHH-HHHHHHHh
Q 016969           11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLI-FGAVQLIL   89 (379)
Q Consensus        11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i-~~~i~~pl   89 (379)
                      ..+..|..++++||+...+..+....+.+..+..-.-..+|.++...    .+    +      ...|.+. ...+..-.
T Consensus        63 ~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~----~------tp~~~~~l~~l~~~~~  128 (359)
T TIGR00912        63 EKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIKTYL----LP----R------TPIIVIIILIIIVSIY  128 (359)
T ss_pred             CCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----C------CCHHHHHHHHHHHHHH
Confidence            45899999999999988888877777766666555555555544322    11    0      1123221 11212222


Q ss_pred             ccCCCCCchhHHHHHHHHHHHHH-HHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHH-hhhHHhhcCCchhHH
Q 016969           90 SQAPDFHNIQSLSVIAAVMSFAY-SFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQA-LGDIAFAYPYSLILI  167 (379)
Q Consensus        90 s~~r~l~~l~~~S~~~~~~~~~~-~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~faf~~~~~~~  167 (379)
                      ...+.++....++.+-....+.. .++.......+   .+. + ...+   .. .....+...+ .....++|.+.....
T Consensus       129 ~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~---~~~-~-~l~P---~~-~~g~~~~~~~~~~~~~~~f~g~~i~~  199 (359)
T TIGR00912       129 IVRKGIEVLLRTAEILLIIFLILFILVLILLAPKL---GNI-K-NLLP---VL-ENGLSPILKGAYPVVTFAFGEIEIFF  199 (359)
T ss_pred             HHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---ccH-H-HccC---cc-ccCcHHHHhhhhHHhhhhhHHHHHHH
Confidence            23356777777666554432222 11111111111   000 0 0110   00 1111233333 346778888877777


Q ss_pred             HHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc
Q 016969          168 EIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  213 (379)
Q Consensus       168 ~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v  213 (379)
                      ....++|||    ||.+|+...+...+..+|...-+..-..+|.+.
T Consensus       200 ~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~  241 (359)
T TIGR00912       200 LLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNV  241 (359)
T ss_pred             HHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHH
Confidence            788888875    788999999999999999998888888888643

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=97.40  E-value=0.022  Score=56.81  Aligned_cols=186  Identities=12%  Similarity=0.085  Sum_probs=110.3

Q ss_pred             CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH--HH
Q 016969           11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ--LI   88 (379)
Q Consensus        11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~--~p   88 (379)
                      .-.+-+-+++.+|++...++.............+.....+..+..+.+..  .  ..    ..+...+..+..++.  +-
T Consensus        75 ~GG~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~----~~~~~~~~~~~~~~~~~~~  146 (466)
T COG0531          75 AGGAYAYAKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGP--G--LL----SIGPLLIILIALALIALLT  146 (466)
T ss_pred             CCCeeeehhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc--h--hh----cCCchHHHHHHHHHHHHHH
Confidence            33455667889998888888888888888888888888877666665420  0  00    001112222222222  22


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~  168 (379)
                      +.-.+..|.......+..+..+...++.....+.....++ .+ ......  +......+...+++...++|.|-....+
T Consensus       147 ~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~-~~~~~~--~~~~~~~~~~~~~~~~~~~f~G~e~~~~  222 (466)
T COG0531         147 LLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GN-LFAPFN--PGGGSFGGILAAILLAFFAFTGFEAIAT  222 (466)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-cc-cCCCcc--cccchHHHHHHHHHHHHHHhhcHHHHHH
Confidence            3333455555555555444333322222222222221111 00 001000  0111222477888999999999999999


Q ss_pred             HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969          169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  211 (379)
Q Consensus       169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  211 (379)
                      .-+|+|||   +|+.+|+...++..+..+|....+.-....++
T Consensus       223 ~a~E~knp---~r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         223 LAEEVKNP---KRTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            99999997   26689999999999999999988877777775

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=97.39  E-value=0.18  Score=50.72  Aligned_cols=54  Identities=7%  Similarity=-0.172  Sum_probs=41.9

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      .+..+.....|+|.|-......-+|+|||   +|+.+|++..+..+...+|...-+.
T Consensus       214 ~~~~~~~~~~~~f~G~e~~~~~aeE~knP---~r~iPrai~~s~~i~~~~~~~~~~~  267 (475)
T TIGR03428       214 AFLVSGLMAAYVMVGFGSAGELSEETKNP---RRVAPRTILTALSVSALGGGLMILG  267 (475)
T ss_pred             HHHHHHHHHHHHhcCcchHHHHHHHhcCc---chhhhHHHHHHHHHHHHHHHHHHHH
Confidence            34556666789999999999999999998   3789999999888776655544443

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=97.01  E-value=0.1  Score=52.89  Aligned_cols=54  Identities=19%  Similarity=0.130  Sum_probs=45.8

Q ss_pred             HHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          148 LVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       148 ~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      +...++....|+|.|-......-+|+|||   +|+.+|+...+...+..+|....+.
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p---~~~~p~ai~~~~~~~~~~y~l~~~~  265 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENP---EKNFPKGIIIAAIVISIGYSLAIFL  265 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCC---CccccHHHHHHHHHHHHHHHHHHHH
Confidence            45667777899999999999999999998   3789999999999999999876443

>TIGR00800 ncs1 NCS1 nucleoside transporter family

Probab=96.92  E-value=0.032  Score=55.65  Aligned_cols=197  Identities=16%  Similarity=0.051  Sum_probs=104.6

Q ss_pred             ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCc--hhhHHHH
Q 016969            6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT--YYMLIFG   83 (379)
Q Consensus         6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~--~~~~i~~   83 (379)
                      ...|...++.-+.|..||.+|..+..++..+..+|=...-....++.+..+++....+. .+ .+-+++..  ...+++.
T Consensus        70 ~G~r~Gl~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~-~~-~~~~~t~~~~~~~~i~~  147 (442)
T TIGR00800        70 AGAKYGLPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGY-LH-LGNGMTTLELICFIIFW  147 (442)
T ss_pred             hHHHhCCCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccc-cc-cCCcccHHHHHHHHHHH
Confidence            45667778889999999999999999999999999999999999999888886532110 00 00000111  1223444


Q ss_pred             HHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccc-cCchhhHHHHHHHHhhhHH-hhcC
Q 016969           84 AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVS-TTTSIEKMWLVAQALGDIA-FAYP  161 (379)
Q Consensus        84 ~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~-faf~  161 (379)
                      .+.+++......+-.+.....+....+....+ ....+.+.....+    ....+ +.+.....+++..++...+ +.-.
T Consensus       148 ~l~~~~~~~~g~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s  222 (442)
T TIGR00800       148 ALVLVFLFFFGYKIRHLFEWLAVVPPFAAFGM-LIWALSKAHGKGP----LGELTGTLHGSTGAWAFLYALSLVIGSFAT  222 (442)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHcCCCCc----cccCCCCCCcchhHHHHHHHHHHHHHHHHH
Confidence            55556555544444444444443221111111 1111111110000    00010 0011223344554444432 2223


Q ss_pred             CchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccc----ccCcc
Q 016969          162 YSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAA----FGDNT  213 (379)
Q Consensus       162 ~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~----fG~~v  213 (379)
                      .-.+.++..+-+|+|    ++-.+....++.........+|+.+-..    +|+..
T Consensus       223 ~~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~  274 (442)
T TIGR00800       223 WATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPY  274 (442)
T ss_pred             HHcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence            344778888889875    3333335556666666666666666655    77653

The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.

>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX

Probab=96.72  E-value=0.12  Score=50.60  Aligned_cols=181  Identities=11%  Similarity=0.036  Sum_probs=100.6

Q ss_pred             ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHH
Q 016969            6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAV   85 (379)
Q Consensus         6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i   85 (379)
                      +++|...++.-+.|..||++|..+..+...+...|=-.......++.++.+.+...    +.+     +...+..+.+++
T Consensus        52 ~G~~~Gl~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~----~~~-----~~~~~~~i~~~l  122 (386)
T TIGR02358        52 IGADTGLSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLF----GEE-----SPMLWILIVGIL  122 (386)
T ss_pred             hhcccCcCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-----chHHHHHHHHHH
Confidence            46677788999999999999999999999999999999999999999999885321    110     112344444444


Q ss_pred             HHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHH-hhcCCch
Q 016969           86 QLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSL  164 (379)
Q Consensus        86 ~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-faf~~~~  164 (379)
                      ..+.+.. -.|.++++..++........+........+.   + ... ....   +..   .++..++...+ +.-....
T Consensus       123 ~~~~~~~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~---~-~~~-~~~~---~~~---~s~~~~~~~~~~~~~swa~  190 (386)
T TIGR02358       123 VTLWLLS-GPLAFVWLNNWSVWLLLIATLWLLVVVFSKA---D-LSE-LWNR---AGD---MSFAVAVELVIAMPLSWLP  190 (386)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hhh-hcCC---CCC---ccHHHHHHHHHHHHHHHHH
Confidence            4555443 4455666666555432221111111111111   1 000 0110   111   11111221111 1011223


Q ss_pred             hHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969          165 ILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  211 (379)
Q Consensus       165 ~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  211 (379)
                      ..++..+-.|+|    +|.......+..+...+-..+|...-.+.|+
T Consensus       191 ~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~  233 (386)
T TIGR02358       191 LIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQ  233 (386)
T ss_pred             HccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            367777777754    5555555666677777777777766666655

On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.

>PRK11375 allantoin permease; Provisional

Probab=96.61  E-value=0.26  Score=49.68  Aligned_cols=54  Identities=6%  Similarity=-0.199  Sum_probs=43.2

Q ss_pred             ccccCCCCHHhHhhhhcCcCcchhhHHHHH-HHHhhhhheehhhhhhhHHHHHHh
Q 016969            6 PFYFYLPDKFDASHGFSGKTNAWACSFFVH-VGLYGTAIAYTVTSAISMRAIQKS   59 (379)
Q Consensus         6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~-~~~~g~~v~yli~~~~~l~~l~~~   59 (379)
                      .++|...++.-+.|..||.+|..+..+... +..+|=-..-..+.++.+..+++.
T Consensus        83 ~G~~~Gl~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~  137 (484)
T PRK11375         83 AGSKYGVPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGK  137 (484)
T ss_pred             cccccCCChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567788899999999999999888888874 567777777777788887777654

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.53  E-value=0.0096  Score=59.92  Aligned_cols=64  Identities=19%  Similarity=0.168  Sum_probs=53.6

Q ss_pred             HHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969          146 MWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  212 (379)
Q Consensus       146 ~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  212 (379)
                      ..+++.++....++|.|-......-+|.|||   +|+.+|+...++....++|......-=...+.+
T Consensus       199 ~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  199 FSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             hhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            3458889999999999999999999999998   378999999999999999988777655555543

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.10  E-value=0.19  Score=50.33  Aligned_cols=73  Identities=11%  Similarity=-0.024  Sum_probs=50.1

Q ss_pred             HHHHHHHHhhhHHhhcCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCccccccccc
Q 016969          145 KMWLVAQALGDIAFAYPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNTPGNLLTG  220 (379)
Q Consensus       145 ~~~~~~~~~g~~~faf~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v~~~il~n  220 (379)
                      +-|.+..++-.-+..+.|--....+-+|-||+   .++-+|+...+..+..++-..+-+.=..+-++|.+...-.+
T Consensus       250 ~G~afil~f~~~~wt~sGyDa~~H~aEE~~nA---sk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~  322 (550)
T KOG1289|consen  250 NGWAFILGFFNPAWTMSGYDAAAHMAEETKNA---SKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSS  322 (550)
T ss_pred             chHHHHHhhccceeEEeccCchHHHHHHhcch---hhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCC
Confidence            45677777777788888888888899999986   26788888877777766655555544556665443333334

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=96.04  E-value=0.066  Score=50.90  Aligned_cols=176  Identities=12%  Similarity=0.057  Sum_probs=108.1

Q ss_pred             CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHHHH
Q 016969           10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~~p   88 (379)
                      +..|..|..++.+||+..........++.+..+...+-..+|.++...    .+          +...|.+... ....-
T Consensus        60 p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~----lp----------~TP~~~i~~~~ll~~~  125 (320)
T PF03845_consen   60 PGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKTYL----LP----------ETPIWVIILLFLLVAA  125 (320)
T ss_pred             CCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cC----------cCCHHHHHHHHHHHHH
Confidence            678999999999999988888888888888887777777777666544    11          1122333222 22233


Q ss_pred             hccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~~~  168 (379)
                      -...+.++.+...+.+-....+...+++......+ .   +.+ .+..    -...+..+.+.+.-...+.|.+-....-
T Consensus       126 y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~-~---~~~-~l~P----~~~~g~~~i~~~~~~~~~~~~~~~~~l~  196 (320)
T PF03845_consen  126 YAARKGIEVIARVAEILFPIFLILLLLILLLSIPN-I---DWD-NLLP----VLESGIKPILKGSLVISFPFGGIEILLF  196 (320)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhccc-C---CHH-HeeC----cccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence            33456777777655444332222212112221111 1   100 0111    1112233456666666777777777777


Q ss_pred             HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969          169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  212 (379)
Q Consensus       169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  212 (379)
                      +...+|+|    +|..|....+......+|...-+..-..||.+
T Consensus       197 ~~p~~~~~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~  236 (320)
T PF03845_consen  197 LFPFVKDK----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE  236 (320)
T ss_pred             HHHHcCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence            78888875    67788888888888888888888888888864

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>PRK09442 panF sodium/panthothenate symporter; Provisional

Probab=95.90  E-value=2.3  Score=42.96  Aligned_cols=85  Identities=14%  Similarity=0.130  Sum_probs=58.4

Q ss_pred             CCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|..|.-++-||++ .+.+..+...+..++...+.+.-.+..++.+.+              ++...-+++..++++-
T Consensus       106 ~~~T~~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~i  171 (483)
T PRK09442        106 NAVTLNDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVAL  171 (483)
T ss_pred             CCccHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence            6799999999999976 466666666666666666777777777776652              1122223444556677


Q ss_pred             hccCCCCCchhHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~  108 (379)
                      .+..--++...++..+=.+.
T Consensus       172 Yt~~GGl~av~~TD~iQ~~i  191 (483)
T PRK09442        172 YTAFGGFRAVVLTDALQGIV  191 (483)
T ss_pred             HHHhccHHHHHHHHHHHHHH
Confidence            77888888888888776554

>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]

Probab=95.73  E-value=0.52  Score=46.53  Aligned_cols=171  Identities=18%  Similarity=0.127  Sum_probs=95.1

Q ss_pred             hHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHHhccC--C
Q 016969           16 DASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLILSQA--P   93 (379)
Q Consensus        16 dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~--r   93 (379)
                      .++|+.||.++.++..+.+.+.++|-...-.+..++.   ...   .    +    ..+...++++.++++...+..  |
T Consensus        85 i~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a---~~~---~----~----~~~~~~~ili~g~l~~l~~ifG~r  150 (442)
T COG1457          85 ILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIA---IGS---G----T----GLPVWAGILIIGVLMTLVTIFGYR  150 (442)
T ss_pred             eeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccc---ccc---C----C----CCcHHHHHHHHHHHHHHHHHHhHH
Confidence            4689999999999999999999999999988888886   111   1    1    123445566666555555544  6


Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHH-hhcCCchhHHHHHhH
Q 016969           94 DFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIA-FAYPYSLILIEIQDT  172 (379)
Q Consensus        94 ~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-faf~~~~~~~~i~~~  172 (379)
                      -++.+...+.......+.+.+.   . +.+..  +..+. ....+ .+...+   +..+++..+ +.-.......+..+-
T Consensus       151 ~l~~l~~~a~~~~~~lf~~l~~---~-~~~~~--~~~~~-~~~~~-~~~~~~---fl~a~slv~g~~~sw~~~~aDysRy  219 (442)
T COG1457         151 ALHKLERIAVPLLLLLFLYLLA---L-LFRSK--GGLDA-LWVKG-PTSPLS---FLSALSLVIGSFASWGPYAADYSRY  219 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---H-HHhcc--cccce-eeccC-CCcchh---HHHHHHHHHHHHHhhhhhhhhhhhh
Confidence            6777766666555432222221   1 11110  00011 01000 011111   222222111 122233456677788


Q ss_pred             hCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCcc
Q 016969          173 LKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDNT  213 (379)
Q Consensus       173 M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~v  213 (379)
                      +|+|+|  +|.......+......+-+..|...-.+=|++.
T Consensus       220 ~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~  258 (442)
T COG1457         220 APSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD  258 (442)
T ss_pred             cCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            887633  244444556666677777788888888888765

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=95.63  E-value=0.62  Score=43.85  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=59.5

Q ss_pred             ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhh--HHHH
Q 016969            6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYM--LIFG   83 (379)
Q Consensus         6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~i~~   83 (379)
                      ..+-+.++|+|.-++.+||+...+.|+.+....+++|+.-+--.|.++++.++                -..|+  ++..
T Consensus        60 g~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~----------------lP~wiGali~i  123 (349)
T COG3949          60 GKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG----------------LPYWIGALIII  123 (349)
T ss_pred             HHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC----------------ccHHHHHHHHH
Confidence            34558899999999999999999999999999999999888777777666542                22344  2333


Q ss_pred             HHHHHhccCCCCCchhHHH
Q 016969           84 AVQLILSQAPDFHNIQSLS  102 (379)
Q Consensus        84 ~i~~pls~~r~l~~l~~~S  102 (379)
                      ..+..+-++++.+.+--..
T Consensus       124 ~~v~i~lfl~~vegi~tvn  142 (349)
T COG3949         124 LLVLILLFLGRVEGIITVN  142 (349)
T ss_pred             HHHHHHHHHhcccceeeeh
Confidence            4445555666677664443

>TIGR02119 panF sodium/pantothenate symporter

Probab=95.62  E-value=2.8  Score=42.05  Aligned_cols=85  Identities=15%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCCCHHhHhhhhcCcC-cchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKT-NAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~-~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|.+|.-++-||++ .+.+..++..+..++...+.+.-.+..++.+.+              ++...-+++.+++.+-
T Consensus       105 ~~~T~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~i  170 (471)
T TIGR02119       105 NAITINDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLI  170 (471)
T ss_pred             CCccHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
Confidence            7789999999999965 577888888888888777777777777776652              1222223444555666


Q ss_pred             hccCCCCCchhHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~  108 (379)
                      ....--++...++..+=.+.
T Consensus       171 Yt~~GG~~av~~td~iQ~~v  190 (471)
T TIGR02119       171 YTTFGGFRAVALTDAIQGIV  190 (471)
T ss_pred             HHHhhhHHHHHHHHHHHHHH
Confidence            77777888888888776543

Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.

>PRK11017 codB cytosine permease; Provisional

Probab=95.47  E-value=0.46  Score=46.81  Aligned_cols=51  Identities=12%  Similarity=-0.123  Sum_probs=40.6

Q ss_pred             ccccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHH
Q 016969            6 PFYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAI   56 (379)
Q Consensus         6 ~~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l   56 (379)
                      +++|...++.-+.|..||.+|.++..+...+...|=......+.++.++++
T Consensus        65 ~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~  115 (404)
T PRK11017         65 IGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKA  115 (404)
T ss_pred             HHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            467888899999999999999999988888888776666555666655554

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=95.15  E-value=1.9  Score=44.21  Aligned_cols=178  Identities=10%  Similarity=0.004  Sum_probs=95.4

Q ss_pred             HhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--HHHHHhccCCC
Q 016969           17 ASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--AVQLILSQAPD   94 (379)
Q Consensus        17 l~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--~i~~pls~~r~   94 (379)
                      -+++..|+....++.....+..+-++-+-....+..++.+...  .+.....+  ..+...|..++.  ++++.+.-.|-
T Consensus       101 ya~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~--~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~  176 (554)
T KOG1286|consen  101 YAYRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGA--SLIGILVD--TVNPGGWIPDFLAFILIINLFGVLA  176 (554)
T ss_pred             eeeeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcc--cccccccc--CCCCCccHHHHHHHHHHHHHHHHhh
Confidence            3455666766777777777777777766666666666665400  00000000  122233443332  33344444454


Q ss_pred             CCchhHHHHHHHHHHHHHHHHhhhheeeeeec-CCcccccccccccCc----hhhH-HHHHHHHhhhHHhhcCCchhHHH
Q 016969           95 FHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIG-NGFVMGSFSGVSTTT----SIEK-MWLVAQALGDIAFAYPYSLILIE  168 (379)
Q Consensus        95 l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~-~~~~~~~~~~~~~~~----~~~~-~~~~~~~~g~~~faf~~~~~~~~  168 (379)
                      .-..++.+.+.-+.+++-++ +++..+.-+.. ++++++.  |.+.+.    ..+. +.+...++.+..|+|.|.-.+-.
T Consensus       177 ~ge~ef~~~~~kvl~~v~~~-Il~iVi~~G~~~~d~~~~i--g~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~  253 (554)
T KOG1286|consen  177 YGEVEFSLAFNKILTAVGFI-ILAIVIIAGGGPADVKNWI--GFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVAT  253 (554)
T ss_pred             ccceeehHHHHHHHHHHHHH-HhheeeecCCCcCCcCCCc--CccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHH
Confidence            34444333333332222111 12222222211 1111111  110000    1111 33467788899999999999888


Q ss_pred             HHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhh
Q 016969          169 IQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGF  204 (379)
Q Consensus       169 i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~  204 (379)
                      .-.|-|||+   |+.+++...++..+..+|....+.
T Consensus       254 ~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~  286 (554)
T KOG1286|consen  254 TAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIV  286 (554)
T ss_pred             HHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            899999983   788999999999999999877653

>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]

Probab=94.35  E-value=6.7  Score=39.74  Aligned_cols=190  Identities=12%  Similarity=-0.013  Sum_probs=100.4

Q ss_pred             cCCCCHHhHhhhhcC-cCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969            9 FYLPDKFDASHGFSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   87 (379)
Q Consensus         9 ~~~~sY~dl~~~~~G-~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~   87 (379)
                      ++..|.+|.-++=|| ++.|.+..+...+..++-+.+.++-.++.++.....              +...=.++.+.++.
T Consensus       102 ~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~gi--------------~~~~~~~~~~~~v~  167 (493)
T COG0591         102 RGATTIPDFLEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFGI--------------SYVTGILIGALIVA  167 (493)
T ss_pred             cCCccHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCC--------------CHHHHHHHHHHHHH
Confidence            478899999999999 889999999999999999999999999987555420              11111222344555


Q ss_pred             HhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeee--eecCCcc-cccccc-c--ccCchhhHHH--HHHHHhhhHHhh
Q 016969           88 ILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAK--VIGNGFV-MGSFSG-V--STTTSIEKMW--LVAQALGDIAFA  159 (379)
Q Consensus        88 pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~--~~~~~~~-~~~~~~-~--~~~~~~~~~~--~~~~~~g~~~fa  159 (379)
                      .-...--++...++..+=.........++.......  +..+..+ .+...+ .  .........+  ......++.++.
T Consensus       168 ~Yt~~gG~~av~~Td~iqg~im~i~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  247 (493)
T COG0591         168 LYTFLGGLRAVVWTDFIQGLIMLIALIVIPILVLILFGGFGELFAVLASLAPLFLTHPFDGALSPIYIISLIAWGTLFLG  247 (493)
T ss_pred             HHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhcccccccCcccccchHHHHHHHHHHHHHHhh
Confidence            556666777777777665443222111111111111  1111000 000000 0  0001101111  133456666677


Q ss_pred             cCCchhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969          160 YPYSLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  212 (379)
Q Consensus       160 f~~~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  212 (379)
                      +.+++.+.+-+-..++++..+++.++........+...=..+|+.|...|.+.
T Consensus       248 ~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~  300 (493)
T COG0591         248 YFGQPHILPRFMAAKSIKSLPKSARLAGILWPLYCLLGAFLLGLLGIAYFPLL  300 (493)
T ss_pred             hhcCchhhhhhhhhccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77766654433334433112234555544555555555466666666665543

>TIGR00813 sss transporter, SSS family

Probab=94.31  E-value=4.5  Score=39.70  Aligned_cols=85  Identities=12%  Similarity=0.038  Sum_probs=61.7

Q ss_pred             CCCCHHhHhhhhcCc-CcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~-~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|..|.-++-||+ ..+.+..+...+..+....+.+.-.+..++.+.+              ++...-+++.+++++-
T Consensus        64 ~~~T~~e~l~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~  129 (407)
T TIGR00813        64 GAYTMPEYLEKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITIL  129 (407)
T ss_pred             CCCchhHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHH
Confidence            679999999999998 4777777888888888888888888888777652              1122223344455556


Q ss_pred             hccCCCCCchhHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~  108 (379)
                      -...--++...++..+=.+.
T Consensus       130 Yt~~GG~~av~~Td~iQ~~i  149 (407)
T TIGR00813       130 YTVFGGLKAVVWTDTIQAVI  149 (407)
T ss_pred             HHHHcchHHHHHHHHHHHHH
Confidence            66777888888887776554

have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.

>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells

Probab=94.21  E-value=0.42  Score=46.95  Aligned_cols=86  Identities=12%  Similarity=0.031  Sum_probs=51.0

Q ss_pred             CCCCHHhHhhhhcCcCc--chhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKTN--AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQL   87 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~--~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~   87 (379)
                      +..|.+|.-++-||++.  +.+..+...+....-....+.-.+..++.+.+              ++...-.++..++.+
T Consensus        67 ~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~  132 (406)
T PF00474_consen   67 GAVTIPEYLEKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVI  132 (406)
T ss_dssp             T--SHHHHHHHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHH
T ss_pred             chhhhhhhhhhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHH
Confidence            77899999999999988  66666666666667777777777776666542              122233344555666


Q ss_pred             HhccCCCCCchhHHHHHHHHHH
Q 016969           88 ILSQAPDFHNIQSLSVIAAVMS  109 (379)
Q Consensus        88 pls~~r~l~~l~~~S~~~~~~~  109 (379)
                      .....-=++...++..+-.+..
T Consensus       133 iYt~~GGl~av~~td~iQ~~i~  154 (406)
T PF00474_consen  133 IYTFFGGLRAVAWTDFIQGVIM  154 (406)
T ss_dssp             HTTCTT------SHHHHHHHHH
T ss_pred             HhhhhhhHhhhhHHHHHHHHHH
Confidence            6777778888888887766543

Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=93.25  E-value=10  Score=38.30  Aligned_cols=174  Identities=11%  Similarity=0.068  Sum_probs=89.2

Q ss_pred             CCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH-
Q 016969           10 YLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI-   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p-   88 (379)
                      ..-+|.+-+.+.-++.....+...=..+-.-++-+-++..+..++-..+    +        ..+...|..++.++++. 
T Consensus       107 ~sGsF~~ya~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p----~--------~v~~~~w~~iF~~~i~~i  174 (541)
T COG0833         107 VSGSFSTYATRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFP----D--------TVPPWIWIAIFLVLIFLL  174 (541)
T ss_pred             CCCchhhhhhhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcC----C--------CCChHHHHHHHHHHHHHH
Confidence            3344777777777776665555554444444444444444333222221    0        12456677777655544 


Q ss_pred             -hccCCCCCchh-HHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccC-chhhHHHHHHHHhhhHHhhcCCchh
Q 016969           89 -LSQAPDFHNIQ-SLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTT-TSIEKMWLVAQALGDIAFAYPYSLI  165 (379)
Q Consensus        89 -ls~~r~l~~l~-~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~faf~~~~~  165 (379)
                       +.-.|-..+-- |+|.+=.+..+.+.+  ++..+..+..+++......=+.+. .....+.++...+-+..|+|+|...
T Consensus       175 N~~~Vk~fGE~Efw~s~iKV~~ii~Fii--~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtEl  252 (541)
T COG0833         175 NLFGVKGFGETEFWFSSIKVLTIIGFII--LGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTEL  252 (541)
T ss_pred             HHhcccccceehHHHHHHHHHHHHHHHH--HHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceee
Confidence             44456555554 555555443333222  222222221111100000000000 1112234466677777899999888


Q ss_pred             HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhh
Q 016969          166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLF  200 (379)
Q Consensus       166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~  200 (379)
                      +---..|-|||   +|..+|+.+..+-=..++|+.
T Consensus       253 vgiaAgEs~nP---~K~iPkAik~vfwRIl~FYi~  284 (541)
T COG0833         253 VGLAAGESENP---RKSIPKAIKQVFWRILLFYIL  284 (541)
T ss_pred             eeeeecccCCc---hhhhHHHHHHHHHHHHHHHHH
Confidence            76667889987   367888887777666666643

>PRK12488 acetate permease; Provisional

Probab=91.09  E-value=20  Score=36.81  Aligned_cols=85  Identities=14%  Similarity=0.026  Sum_probs=58.2

Q ss_pred             CCCCHHhHhhhhcC-cCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSG-KTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G-~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|.+|.-++=|| ++.|.+..+...+..+.-..+.+.-.|..++.+..              ++...=+++.+++.+.
T Consensus       128 g~~T~~d~l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~  193 (549)
T PRK12488        128 GKYTFADVVSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVL  193 (549)
T ss_pred             CCcchHHHHHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence            56899999998888 56888888888777777777777777777666642              1112123344455566


Q ss_pred             hccCCCCCchhHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~  108 (379)
                      -+..-=++...++..+=.+.
T Consensus       194 Yt~~GGm~av~~td~iQ~~i  213 (549)
T PRK12488        194 YVTFGGMLATTWVQIIKAVL  213 (549)
T ss_pred             HHhccchhHHHHHHHHHHHH
Confidence            66777788888888776544

>PRK15419 proline:sodium symporter PutP; Provisional

Probab=90.02  E-value=24  Score=35.83  Aligned_cols=85  Identities=9%  Similarity=-0.051  Sum_probs=50.4

Q ss_pred             CCCCHHhHhhhhcCcCcch---hhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKTNAW---ACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~---~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      +..|-.|.-++=||++.|.   +..+...+..+.-+.+-+...+..++.+.+              ++...-+++.+.+.
T Consensus       106 ~~~T~~e~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv  171 (502)
T PRK15419        106 NALTLPDYFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAAT  171 (502)
T ss_pred             CceeHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHH
Confidence            6789999999999976544   344444444444444444445555555432              12222233445566


Q ss_pred             HHhccCCCCCchhHHHHHHHHH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~  108 (379)
                      +.-...-=++...++..+=.+.
T Consensus       172 ~iYt~~GGl~aV~~TD~iQ~~i  193 (502)
T PRK15419        172 ILYTFIGGFLAVSWTDTVQASL  193 (502)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH
Confidence            6667777788888877776544

>TIGR02121 Na_Pro_sym sodium/proline symporter

Probab=85.24  E-value=45  Score=33.67  Aligned_cols=85  Identities=8%  Similarity=-0.059  Sum_probs=48.1

Q ss_pred             CCCCHHhHhhhhcCcCcchh---hHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKTNAWA---CSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~---~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      +..|-.|.-++=||++.+.+   ..+...+....-...-+...+..++.+.+              ++...-+++.+++.
T Consensus       102 ~~~T~~e~l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~  167 (487)
T TIGR02121       102 NSITLPDFFENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALII  167 (487)
T ss_pred             CCccHHHHHHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHH
Confidence            56788999999999754443   34444444444444445555555555542              11122233444555


Q ss_pred             HHhccCCCCCchhHHHHHHHHH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~  108 (379)
                      +.-...--++...++..+=.+.
T Consensus       168 ~~Yt~~GGl~av~~TD~iQ~~i  189 (487)
T TIGR02121       168 VIYTFFGGFLAVSWTDFVQGLL  189 (487)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH
Confidence            5666666777777777665543

This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.

>TIGR02711 symport_actP cation/acetate symporter ActP

Probab=83.21  E-value=59  Score=33.43  Aligned_cols=84  Identities=11%  Similarity=-0.077  Sum_probs=52.5

Q ss_pred             CCCCHHhHhhhhcCc-CcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGK-TNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~-~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|.+|.-++=||+ ..|.+..+...+..+.-.+..++-.+..++.+++              ++...=+++.+++++.
T Consensus       128 g~~T~~d~l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~  193 (549)
T TIGR02711       128 GRYTFADVASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVM  193 (549)
T ss_pred             CCccHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
Confidence            568999999988875 4677777777766666666666666666666542              1111113344455555


Q ss_pred             hccCCCCCchhHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAV  107 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~  107 (379)
                      -...-=++...++..+=.+
T Consensus       194 Yt~~GGm~av~~td~iQ~~  212 (549)
T TIGR02711       194 YVLFGGMLATTWVQIIKAV  212 (549)
T ss_pred             HHHhhhhHHHHHHHHHHHH
Confidence            5566667777777666544

Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.81
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	98.4
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	98.37
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	96.86
3dh4_A	530	Sodium/glucose cotransporter; membrane protein, sy	94.78
2xq2_A	593	Sodium/glucose cotransporter; transport protein, i	92.04

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.81  E-value=6e-08  Score=94.85  Aligned_cols=185  Identities=8%  Similarity=0.008  Sum_probs=104.0

Q ss_pred             ccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH-HHH
Q 016969            8 YFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG-AVQ   86 (379)
Q Consensus         8 ~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~-~i~   86 (379)
                      +++.-+.-+.+++.+|++...++.+...+.......++....++.+...++..     .  .  .+.  .+.+... .++
T Consensus        67 ~p~~Gg~y~~~~~~~G~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~--~--~~~--~~~~~~~~~~~  135 (445)
T 3l1l_A           67 DPSPGGSYAYARRCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----K--D--PWV--LTITCVVVLWI  135 (445)
T ss_dssp             CCCTTTHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGG-----G--S--HHH--HHHHHHHHHHH
T ss_pred             CCCCCCchhhHHhHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccc-----c--c--cHH--HHHHHHHHHHH
Confidence            34445677888999999998888888888777666666666666554333210     0  0  011  1111111 111


Q ss_pred             HHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCCchhH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLIL  166 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~~  166 (379)
                      +-..-.+..|....++.+.....+...++.+...+... + +. +. ...+. .....+..++..++....|+|.|....
T Consensus       136 ~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~-~-~~-~~-~~~~~-~~~~~~~~~~~~~~~~~~~af~G~e~~  210 (445)
T 3l1l_A          136 FVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWF-R-GE-TY-MAAWN-VSGLGTFGAIQSTLNVTLWSFIGVESA  210 (445)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTC-C-CC-CC-CCC------------HHHHHHHHHHTTTTTTHH
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-hh-hc-ccccC-ccCCccHHHHHHHHHHHHHHHHhHHHH
Confidence            22222345555555544443322222111122222111 1 10 00 01110 011112345778889999999999999


Q ss_pred             HHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccC
Q 016969          167 IEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGD  211 (379)
Q Consensus       167 ~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~  211 (379)
                      ....+|+|||   +|+.+|+...+...+.++|+...+.-....+.
T Consensus       211 ~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          211 SVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             HHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             HHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            9999999987   37899999999999999999888776665554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=98.40  E-value=1.9e-05  Score=76.88  Aligned_cols=180  Identities=8%  Similarity=-0.008  Sum_probs=100.3

Q ss_pred             cccCCCCHHhHhhhhcCcCc-chhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHH--
Q 016969            7 FYFYLPDKFDASHGFSGKTN-AWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFG--   83 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~-~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~--   83 (379)
                      .|++.-..-+.+++.+|++. .-.+.....+.....+..+....++.+..+++.    .         +...+..+..  
T Consensus        65 ~~P~~Gg~y~~~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~---------~~~~~~~~~~~~  131 (444)
T 3gia_A           65 KIVSNAGPIAFIHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINA----P---------INTFNIAITEIG  131 (444)
T ss_dssp             TCCCTTTHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----C---------CCHHHHHHHHHH
T ss_pred             hCCCCCcHHHhHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----C---------CchHHHHHHHHH
Confidence            34455567788889999962 222344555555556666677777766655421    0         0111211111  


Q ss_pred             -HHHHHhccCCCCCchhHHHHHHHHHHHHHHHHhhhheeeeeecCCcccccccccccCchhhHHHHHHHHhhhHHhhcCC
Q 016969           84 -AVQLILSQAPDFHNIQSLSVIAAVMSFAYSFIGFGLGVAKVIGNGFVMGSFSGVSTTTSIEKMWLVAQALGDIAFAYPY  162 (379)
Q Consensus        84 -~i~~pls~~r~l~~l~~~S~~~~~~~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~  162 (379)
                       .+++-..-.+..|....++.+.....+...++.++..+...   ++.+  ..+   ...+..+.+++.+++...|+|.|
T Consensus       132 ~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~---~~~~--~~~---~~~~~g~~~~~~~~~~~~~a~~G  203 (444)
T 3gia_A          132 IVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITI---HPSY--VIP---DLAPSAVSGMIFASAIFFLSYMG  203 (444)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CGGG--TSC---CCSHHHHHHHHHHHHHGGGGGTH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---Chhh--cCC---CCCCcchHHHHHHHHHHHHHHHh
Confidence             11122223345555555544433322221111111122211   1111  110   01122334577888888999999


Q ss_pred             chhHHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhccccc
Q 016969          163 SLILIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFG  210 (379)
Q Consensus       163 ~~~~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG  210 (379)
                      ........+|+|||   +|+.+|+...+...+.++|....+......+
T Consensus       204 ~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          204 FGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            99999999999987   3679999999999999999988776555544

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=98.37  E-value=2.7e-06  Score=84.53  Aligned_cols=187  Identities=10%  Similarity=-0.056  Sum_probs=99.0

Q ss_pred             CCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCc-hhhHHHH-HHHHH
Q 016969           11 LPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDT-YYMLIFG-AVQLI   88 (379)
Q Consensus        11 ~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~-~~~~i~~-~i~~p   88 (379)
                      .-..-.-+++.+|++...++.....+.......++....++.+..++.    +. +    ...+.. .+.+... .+++-
T Consensus        72 ~GG~y~~~~~~~g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~p-~----~~~~~~~~~~~~~~~~~~~~  142 (511)
T 4djk_A           72 EGGVFAWVSNTLGPRWGFAAISFGYLQIAIGFIPMLYFVLGALSYILK----WP-A----LNEDPITKTIAALIILWALA  142 (511)
T ss_dssp             --CHHHHHHHHHCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTT----CG-G----GTSCSSHHHHHHHHHHHHHH
T ss_pred             CCChhhhHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----Cc-c----cccCcHHHHHHHHHHHHHHH
Confidence            455666778999998888888888777776666666666665543320    10 0    000111 1121111 12222


Q ss_pred             hccCCCCCchhHHHHHHHHHHHH-HHHHhhhheeeeeecCCcc--cccccccccCchhhHHHHHHHHhhhHHhhcCCchh
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSFA-YSFIGFGLGVAKVIGNGFV--MGSFSGVSTTTSIEKMWLVAQALGDIAFAYPYSLI  165 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~~-~~~i~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~faf~~~~~  165 (379)
                      ..-.+..|....+..+.....++ ..++.+...+.....+++.  +.+..+..  +. ....+...++....|+|.|...
T Consensus       143 ~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~a~~G~e~  219 (511)
T 4djk_A          143 LTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFF--PD-FSKVGTLVVFVAFILSYMGVEA  219 (511)
T ss_dssp             HHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCC--CC-TTSTTTTTTHHHHHHHHTTGGG
T ss_pred             HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccC--CC-cccchHHHHHHHHHHHHhhHHH
Confidence            33334556555555443222111 0111111111111111100  00001110  00 0001233456778999999999


Q ss_pred             HHHHHhHhCCCCCchhhhhhhhHHHHHHHHHHHhhhhhhhcccccCc
Q 016969          166 LIEIQDTLKSPPPANQTMKKASTMSIITTTIFYLFCGGFGYAAFGDN  212 (379)
Q Consensus       166 ~~~i~~~M~~p~p~~~~~~~~~~~s~~~~~~~Y~~~g~~GY~~fG~~  212 (379)
                      .....+|+|||   +|+.+|++..++..+.++|+...+.-....+++
T Consensus       220 ~~~~a~E~k~P---~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          220 SATHVNEMSNP---GRDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             GTGGGSSSSCC---TTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHhccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            99999999998   278999999999999999999888766666653

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=96.86  E-value=0.0038  Score=61.81  Aligned_cols=92  Identities=14%  Similarity=-0.013  Sum_probs=65.8

Q ss_pred             cccCCCCHHhHhhhhcCcCcchhhHHHHHHHHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHH
Q 016969            7 FYFYLPDKFDASHGFSGKTNAWACSFFVHVGLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQ   86 (379)
Q Consensus         7 ~~~~~~sY~dl~~~~~G~~~~~~~~i~~~~~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~   86 (379)
                      ..|...+|.++.|..||+++..+..+...+.++|-...-....++.+..+++... +.        .+.....+++.++.
T Consensus        83 G~~~Gl~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~-g~--------~~~~v~~~i~~~l~  153 (501)
T 2jln_A           83 AIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT-GF--------TNLPLWIVIFGAIQ  153 (501)
T ss_dssp             HHHHCCCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CC--------CCHHHHHHHHHHHH
T ss_pred             HhhcCCChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-Cc--------chHHHHHHHHHHHH
Confidence            3455567999999999999999999999999999999888889999888875321 10        01123344555666


Q ss_pred             HHhccCCCCCchhHHHHHHHHH
Q 016969           87 LILSQAPDFHNIQSLSVIAAVM  108 (379)
Q Consensus        87 ~pls~~r~l~~l~~~S~~~~~~  108 (379)
                      ++.. ..-++.++.+..++...
T Consensus       154 ~~~~-~~G~~~i~~~~~~~~p~  174 (501)
T 2jln_A          154 VVTT-FYGITFIRWMNVFASPV  174 (501)
T ss_dssp             HHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHH-HhCHHHHHHHHHHHHHH
Confidence            6666 44567777766666543

>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}

Probab=94.78  E-value=1.3  Score=43.86  Aligned_cols=87  Identities=10%  Similarity=-0.002  Sum_probs=46.7

Q ss_pred             CCCCHHhHhhhhcCcCcchhhHHHHHH-HHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~-~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|..|.-++-||++.+.+..+...+ +.+..+.+-+...+..++.+..              ++...-+++.+++...
T Consensus        81 ~~~T~~e~l~~Rfg~~~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G--------------i~~~~~i~i~~~i~~~  146 (530)
T 3dh4_A           81 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALV  146 (530)
T ss_dssp             TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT--------------CCHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHH
Confidence            679999999999999888777765543 2222222222233333333321              1222223344555567


Q ss_pred             hccCCCCCchhHHHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMSF  110 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~~  110 (379)
                      -+..--++...++..+=.+..+
T Consensus       147 Yt~~GGl~aV~~TD~iQ~~im~  168 (530)
T 3dh4_A          147 YSIYGGLSAVVWTDVIQVFFLV  168 (530)
T ss_dssp             TTC------CCSHHHHHHHHHH
T ss_pred             HHHhcchHHHHHHHHHHHHHHH
Confidence            7777888888888877665433

>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A

Probab=92.04  E-value=5.3  Score=39.99  Aligned_cols=86  Identities=10%  Similarity=-0.003  Sum_probs=48.8

Q ss_pred             CCCCHHhHhhhhcCcCcchhhHHHHHH-HHhhhhheehhhhhhhHHHHHHhhccccCCCCccccccCchhhHHHHHHHHH
Q 016969           10 YLPDKFDASHGFSGKTNAWACSFFVHV-GLYGTAIAYTVTSAISMRAIQKSNCYHREGHEAACEYSDTYYMLIFGAVQLI   88 (379)
Q Consensus        10 ~~~sY~dl~~~~~G~~~~~~~~i~~~~-~~~g~~v~yli~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~p   88 (379)
                      +..|..|.-++=||++.+.+..+...+ +.+....+-+...+..++.+.+              ++...-+++.++++..
T Consensus       110 ~~~T~~e~l~~Rfg~~~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G--------------i~~~~~i~i~~~i~~~  175 (593)
T 2xq2_A          110 GIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETILG--------------IPLMYSILGLALFALV  175 (593)
T ss_dssp             TCCSHHHHHHHHTCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------------ccHHHHHHHHHHHHHH
Confidence            678999999999999887776655443 2322222233334555555441              1222223344555567


Q ss_pred             hccCCCCCchhHHHHHHHHHH
Q 016969           89 LSQAPDFHNIQSLSVIAAVMS  109 (379)
Q Consensus        89 ls~~r~l~~l~~~S~~~~~~~  109 (379)
                      -+..--++...++-.+-.+..
T Consensus       176 Yt~~GGl~av~~TD~iQ~iim  196 (593)
T 2xq2_A          176 YSIYGGLSAVVWTDVIQVFFL  196 (593)
T ss_dssp             HHHTTC---CCHHHHHHHHHH
T ss_pred             HHHhcchHHHHHHHHHHHHHH
Confidence            777778888888777665543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00