Citrus Sinensis ID: 016976

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIAD
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccEEEEEcccccEEEEEEcccccccccEEEEEEEEEEEEEEEEEcccccccccccEEEEEcccccEEEEEcccccEEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEcccccccEEEEEcEEEEEEEcccccccccccccccEEEEEEcccccEEEccEHHHHEccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEPNDTQQLQQlnsyfhhptatttsgaaattgpsptngllpsqhqhhnnnnnndgggggggmvyphsvassamtstlepakkkrgrprkygtpeqALAAKKTAAYSNSKGKREQRELHQQQQQLlgsggsgssysgapgksqlggignlgqgftphvISVAAGEDVGQKIMLFMQQSKREICILSasgsisnaslrqpatsggnityeGRFEIVSLSGsyvrtdlggrtgglsvclsstdgqiigggvggplkaagpvQVIVGTFQVESMKdvsaglkgdssgsklaspvagasvssvgfrspiesygrnpvrgnddfqtiggthfmiqpygnhvsptqaadwrgsldtrssagydmtgrtgrggnqspengdydqiad
Flexible Loop (DISEMBL)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTStlepakkkrgrprkygtpeqalaakktaAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASgsisnaslrqpatsggnitYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLaspvagasvssvgfrspiesygrnpvrGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTrssagydmtgrtgrggnqspengdydqiad
Low Complexity Region (SEG)
MEPNDTQQLQQLNSYFHHptatttsgaaattgpsptNGLLPSQHQHHnnnnnndgggggggMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHqqqqqllgsggsgssysgAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDgqiigggvggplkaagpvQVIVGTFQVESMKDVSAGLKGDSSGSKLaspvagasvssvgFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIAD
Disordered region (IsUnstruct)
************************************************************************************************************************************************GIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSAS**************GGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE***********************************************DDFQTIGGTHFMIQPYGNHV********************************************
Disordered Region (DISOPRED)
***************************************************************************************************************************************************NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLG*RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQ*****************************************************************************************************************
Disordered Region (DISEMBL)
********LQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVAS*****************************************************************GAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAG********************SVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIAD
Disordered Region (DISPRO)
*********************TTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMV*******************************QALAAK********************************************GIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVES******************************************************************************************RTG*GGN**P**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	379	2.2.26 [Sep-21-2011]
Q9S7C9	311	Putative DNA-binding prot	no	no	0.290	0.353	0.352	2e-08

>sp|Q9S7C9|ESCA_ARATH Putative DNA-binding protein ESCAROLA OS=Arabidopsis thaliana GN=ESC PE=2 SV=1

 Score = 60.8 bits (146), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/119 (35%), Positives = 69/119 (57%), Gaps = 9/119 (7%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---------SGGNIT 206
           HV+ V+ G D+ + +  + ++  R + +L  +G++SN +LRQP T          GG +T
Sbjct: 116 HVLEVSPGADIVESVSTYARRRGRGVSVLGGNGTVSNVTLRQPVTPGNGGGVSGGGGVVT 175

Query: 207 YEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTF 265
             GRFEI+SL+G+ +        GGLS+ L+   GQ++GG V  PL A+ PV ++  +F
Sbjct: 176 LHGRFEILSLTGTVLPPPAPPGAGGLSIFLAGGQGQVVGGSVVAPLIASAPVILMAASF 234

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
225463960	357	PREDICTED: uncharacterized protein LOC10	0.902	0.957	0.586	1e-104
356506003	346	PREDICTED: uncharacterized protein LOC10	0.897	0.982	0.584	4e-98
118484865	369	unknown [Populus trichocarpa]	0.936	0.962	0.580	6e-95
224116000	365	predicted protein [Populus trichocarpa]	0.939	0.975	0.575	4e-94
449443249	362	PREDICTED: uncharacterized protein LOC10	0.949	0.994	0.585	1e-88
147835652	285	hypothetical protein VITISV_034305 [Viti	0.712	0.947	0.626	2e-88
357512373	367	hypothetical protein MTR_7g116320 [Medic	0.807	0.833	0.565	7e-87
297833142	408	hypothetical protein ARALYDRAFT_477717 [	0.918	0.852	0.516	2e-83
30679188	411	AT hook motif DNA-binding family protein	0.910	0.839	0.521	3e-83
255561895	364	DNA binding protein, putative [Ricinus c	0.804	0.837	0.616	3e-82

>gi|225463960|ref|XP_002270792.1| PREDICTED: uncharacterized protein LOC100261576 [Vitis vinifera] gi|296087886|emb|CBI35169.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 231/394 (58%), Positives = 267/394 (67%), Gaps = 52/394 (13%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATT---------------TSGAAATTGPSPTNGLLPSQHQ 45
           MEPNDT+    L SYFHH                    T    A T  SP+NGLLP   +
Sbjct: 1   MEPNDTR----LTSYFHHHQQQPQPPPPPPPQPQPHHQTQNPVAATAASPSNGLLPPSER 56

Query: 46  HHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAY 105
                           + Y HSV S A+TS  E  ++KRGRPRKYGT EQ L+AKK+ + 
Sbjct: 57  PP--------------LGYHHSVPS-AVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSS 101

Query: 106 SNSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGED 165
           S    K++++          G GGS         KSQL  +GN GQ FTPHVI+VA+GED
Sbjct: 102 SVPVPKKKEQ----------GLGGSSK-------KSQLVSLGNAGQSFTPHVITVASGED 144

Query: 166 VGQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDL 225
           V QKIM FMQQSKREICI+SASGSISNASLRQPATSGGN+ YEGRFEI+SL+GSYVRT++
Sbjct: 145 VAQKIMFFMQQSKREICIMSASGSISNASLRQPATSGGNVAYEGRFEILSLTGSYVRTEI 204

Query: 226 GGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSK 285
           GGRTGGLSVCLS+TDG+IIGGGVGGPLKAAGPVQVIVGTF V+S KD S GLK D+S  K
Sbjct: 205 GGRTGGLSVCLSNTDGEIIGGGVGGPLKAAGPVQVIVGTFLVDSKKDTSTGLKADAS-PK 263

Query: 286 LASPVAGASVSSVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRG 345
             SPV GASVS+VGFRS +ES GR PV GNDD Q IGG+HFMIQ  G  ++PT+  DWR 
Sbjct: 264 FTSPVGGASVSNVGFRSAVESSGRIPVMGNDDHQGIGGSHFMIQSRGMQMAPTRPTDWRS 323

Query: 346 SLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIAD 379
             D R + GYD+ GR GRG  QSPENGDY+QI D
Sbjct: 324 GPDARINVGYDLAGRGGRGACQSPENGDYEQIPD 357

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506003|ref|XP_003521778.1| PREDICTED: uncharacterized protein LOC100809675 [Glycine max]

 Score =  364 bits (935), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 225/385 (58%), Positives = 265/385 (68%), Gaps = 45/385 (11%)

Query: 1   MEPNDTQQLQQLNSYF---HHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGG 57
           MEPND     QL S+F   H             T  SPTNGLLP          N D   
Sbjct: 1   MEPNDN----QLTSFFHHHHQQHQHHQPPPPPQTTASPTNGLLP----------NAD--- 43

Query: 58  GGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQ---ALAAKKTAAYSNSKGKREQ 114
            G  ++YPHSVA SA++S LEPAK+KRGRPRKYGTPEQ   A  A  T ++S S  K+  
Sbjct: 44  -GSHILYPHSVA-SAVSSQLEPAKRKRGRPRKYGTPEQALAAKKAATTLSHSFSVDKKPH 101

Query: 115 RELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFM 174
                  +                 KS    +GN GQGFTPHVISVAAGEDVGQKIMLFM
Sbjct: 102 SPTFPSSK-----------------KSHSFALGNAGQGFTPHVISVAAGEDVGQKIMLFM 144

Query: 175 QQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSV 234
           QQS+RE+CILSASGSISNASLRQPATSGG+I YEGRFEI+SL+GSYVR +LG RTGGLSV
Sbjct: 145 QQSRREMCILSASGSISNASLRQPATSGGSIAYEGRFEIISLTGSYVRNELGTRTGGLSV 204

Query: 235 CLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGAS 294
           CLS+TDGQIIGGGVGGPLKAAGPVQVIVGTF +++ KD  AG+KGD S SKL SPV G  
Sbjct: 205 CLSNTDGQIIGGGVGGPLKAAGPVQVIVGTFFIDNKKDTGAGVKGDISASKLPSPV-GEP 263

Query: 295 VSSVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAG 354
           VSS+GFR  ++S   NP+RGND+ Q +GG+HFMIQ  G H +P ++ DW G  D+R++ G
Sbjct: 264 VSSLGFRQSVDSPSGNPIRGNDEHQAMGGSHFMIQQLGLHGTPPRSTDW-GHPDSRNT-G 321

Query: 355 YDMTGRTGRGGNQSPENGDYDQIAD 379
           +++TGR G G +QSPENG Y+QI D
Sbjct: 322 FELTGRIGHGAHQSPENGGYEQIPD 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484865|gb|ABK94299.1| unknown [Populus trichocarpa]

 Score =  353 bits (907), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 226/389 (58%), Positives = 265/389 (68%), Gaps = 34/389 (8%)

Query: 1   MEPNDT-QQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGG 59
           MEPND+ QQ Q   SYF   T TTT+   +      TNGLLP  HQ  ++         G
Sbjct: 1   MEPNDSHQQQQHFTSYFSTTTTTTTTTTPSP-----TNGLLPP-HQPTDSTTPT-----G 49

Query: 60  GGMVYPHSVASSA-------------MTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYS 106
             M+YPHS+  S                +    AK+KRGRPRKYGTPEQALAAKKTA+ +
Sbjct: 50  PHMLYPHSMGPSTTATVTGGGGAPVEAAAAAAAAKRKRGRPRKYGTPEQALAAKKTASSN 109

Query: 107 NSKGKREQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDV 166
           ++   RE++E    Q     +  S S+YS    KSQ   +GN G GFTPHVI+VA GEDV
Sbjct: 110 SAAAYREKKE---HQAGSSSTISSFSAYSSK--KSQHASLGNAGHGFTPHVITVAEGEDV 164

Query: 167 GQKIMLFMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLG 226
            QKIM F+QQS RE+CILSASGSI +ASL QPATSGGNI+YEGR+EI+SL GSYVRT++G
Sbjct: 165 TQKIMHFLQQSMREMCILSASGSILSASLSQPATSGGNISYEGRYEIISLCGSYVRTEMG 224

Query: 227 GRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKL 286
           GR GGLSVCLS T+GQIIGGGVGGPLKAAGPVQVIVGTF +++ K  S   KGD+SGSKL
Sbjct: 225 GRAGGLSVCLSDTNGQIIGGGVGGPLKAAGPVQVIVGTFMLDNKKGGSG--KGDASGSKL 282

Query: 287 ASPVAGASVSSVGFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGS 346
            SPV GASV S GFRSP+ES   NP R NDD  TIGG  F +QP   H++PT+  DW   
Sbjct: 283 PSPV-GASVPSFGFRSPVESSLMNPARANDDHPTIGGNPFTMQPTSMHLTPTRPIDWMSG 341

Query: 347 LDTRSSAGYDMTGRTGRGGNQSPENGDYD 375
            D R+S GYD TGRTG GG QSPENGDY+
Sbjct: 342 PDVRTS-GYDFTGRTGHGGPQSPENGDYE 369

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116000|ref|XP_002332023.1| predicted protein [Populus trichocarpa] gi|222875248|gb|EEF12379.1| predicted protein [Populus trichocarpa]

 Score =  351 bits (900), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 221/384 (57%), Positives = 260/384 (67%), Gaps = 28/384 (7%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGG 60
           ME ND +Q Q      HH T+  +S    T  PSP NGLLP  H   +          G 
Sbjct: 1   MELNDPRQQQH-----HHFTSYFSSTPTTTNTPSPPNGLLPPHHPTDSTTPT------GS 49

Query: 61  GMVYPHSVASSAMTSTL--------EPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKR 112
            ++YPHS+  S   +            AK+KRGRPRKYGTPE ALAAKKTA  ++    R
Sbjct: 50  HLLYPHSMGPSTTATVTGGGAPVEATSAKRKRGRPRKYGTPELALAAKKTATSASVAASR 109

Query: 113 EQRELHQQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIML 172
           E++E HQ       S  SGSS   +        +G  G GFTPHVI+VAAGEDVGQKI+ 
Sbjct: 110 ERKEQHQAGSSSTTSSFSGSSSKKSQHV-----LGTAGHGFTPHVITVAAGEDVGQKIIQ 164

Query: 173 FMQQSKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGL 232
           F+QQS RE+CILSASGS+ N SLRQPATSGGNI+YEGRFEI+SLSGSY+RTD+GGR GGL
Sbjct: 165 FLQQSTREMCILSASGSVMNVSLRQPATSGGNISYEGRFEIISLSGSYIRTDMGGRAGGL 224

Query: 233 SVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAG 292
           SVCLS ++GQIIGGGVGGPLKAAGPVQVIVGTF +++ KD S   KGD+SGSKL SPV  
Sbjct: 225 SVCLSDSNGQIIGGGVGGPLKAAGPVQVIVGTFVLDNKKDGSG--KGDASGSKLPSPVK- 281

Query: 293 ASVSSVGFRSPIESYGRNPVRGNDDFQTIGGTH-FMIQPYGNHVSPTQAADWRGSLDTRS 351
           ASV S GFR P+ES  RNP RGNDD  T+GG + F +QP   H+   +  DWR S D R+
Sbjct: 282 ASVPSFGFRLPVESSVRNPARGNDDLLTVGGGNPFTMQPSTMHLLSARTMDWRSSPDVRT 341

Query: 352 SAGYDMTGRTGRGGNQSPENGDYD 375
           +AGYD TGRTG GG+QSP NGDYD
Sbjct: 342 TAGYDFTGRTGHGGSQSPVNGDYD 365

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443249|ref|XP_004139392.1| PREDICTED: uncharacterized protein LOC101221844 [Cucumis sativus] gi|449520142|ref|XP_004167093.1| PREDICTED: uncharacterized protein LOC101229030 [Cucumis sativus]

 Score =  333 bits (853), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 223/381 (58%), Positives = 270/381 (70%), Gaps = 21/381 (5%)

Query: 1   MEPNDTQQLQQLNSYFHHPTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGG 60
           MEPN+ Q    L+SYF              T  SPTNGLLP  H       ++D G    
Sbjct: 1   MEPNENQ----LSSYF----HHHQHHHQTPTTTSPTNGLLPPTHHLSAAAASSDAGPH-- 50

Query: 61  GMVYPHSVASSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQR-ELH 118
            +VYPHSV S+A++S+ LEPA++KRGRPRKYGTPE+ALAAKK A  S+     + + EL 
Sbjct: 51  -VVYPHSVPSAAVSSSPLEPARRKRGRPRKYGTPEEALAAKKAATASSHSSSSKAKKELA 109

Query: 119 QQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSK 178
                 L +  + SS+S    KSQL  +GN GQGF PHVI+VAAGEDVGQKIM FMQQ K
Sbjct: 110 SSSS--LNAVSASSSFSTPSKKSQLAALGNAGQGFAPHVINVAAGEDVGQKIMQFMQQCK 167

Query: 179 REICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSS 238
           REICILSASGSISNASLRQPA SGGNI YEGRFEIVSL GSYVRTDLGG+TGGLSVCLSS
Sbjct: 168 REICILSASGSISNASLRQPAASGGNIAYEGRFEIVSLCGSYVRTDLGGKTGGLSVCLSS 227

Query: 239 TDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSV 298
            +G IIGGGVGGPLKAAGPVQVIVGTF ++  K+   G KGD S  KL SP+ G S+S++
Sbjct: 228 AEGHIIGGGVGGPLKAAGPVQVIVGTFVIDPKKEFGGG-KGDGSAVKLPSPIGGTSMSNL 286

Query: 299 GFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMT 358
            + S I+S G N +RGND+ Q +G +HF++QP G +++  ++ DWR  LD  ++A YD++
Sbjct: 287 RYGSNIDS-GGNQIRGNDEHQGLGESHFLLQPRGVNLTSPRSTDWRTGLDATNTA-YDLS 344

Query: 359 GRTGRGGNQSPENGDYDQIAD 379
           GRT   G+ SPENGDYDQI D
Sbjct: 345 GRT---GHHSPENGDYDQIPD 362

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147835652|emb|CAN72947.1| hypothetical protein VITISV_034305 [Vitis vinifera]

 Score =  332 bits (850), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 198/316 (62%), Positives = 225/316 (71%), Gaps = 46/316 (14%)

Query: 64  YPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQ 123
           Y HSV S A+TS  E  ++KRGRPRKYGT EQ L+AKK+ + S    K++++        
Sbjct: 16  YHHSVPS-AVTSPPETVRRKRGRPRKYGTSEQGLSAKKSPSSSVPVPKKKEQ-------- 66

Query: 124 LLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICI 183
             G GGS         KSQL  +GN GQ FTPHVI+VA+GEDV QKIM FMQQSKREICI
Sbjct: 67  --GLGGSSK-------KSQLVSLGNAGQSFTPHVITVASGEDVAQKIMFFMQQSKREICI 117

Query: 184 LSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQI 243
           +SASGSISNASLRQPATSGGN+ YEGRFEI+SL+GSYVRT++GGRTGGLSVCLS+TDG+I
Sbjct: 118 MSASGSISNASLRQPATSGGNVAYEGRFEILSLTGSYVRTEIGGRTGGLSVCLSNTDGEI 177

Query: 244 IGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSVGFRSP 303
           IGGGVGGPLKAAGPVQVIVGTF V+S KD S GLK D+S  K  SPV GASVS+VGFRS 
Sbjct: 178 IGGGVGGPLKAAGPVQVIVGTFLVDSKKDTSTGLKADAS-PKFTSPVGGASVSNVGFRSA 236

Query: 304 IESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGR 363
           +ES GR PV GNDD Q IGG+HFMIQ                             GR GR
Sbjct: 237 VESSGRIPVMGNDDHQGIGGSHFMIQ---------------------------SRGRGGR 269

Query: 364 GGNQSPENGDYDQIAD 379
           G  QSPENGDY+QI D
Sbjct: 270 GACQSPENGDYEQIPD 285

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512373|ref|XP_003626475.1| hypothetical protein MTR_7g116320 [Medicago truncatula] gi|355501490|gb|AES82693.1| hypothetical protein MTR_7g116320 [Medicago truncatula]

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 204/361 (56%), Positives = 242/361 (67%), Gaps = 55/361 (15%)

Query: 37  NGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQA 96
           NGLLP          N DG      ++YPHSVASSA++S LEPAK+KRGRPRKYGTPEQA
Sbjct: 44  NGLLP----------NTDGSH----ILYPHSVASSAVSSQLEPAKRKRGRPRKYGTPEQA 89

Query: 97  LAAKKTAAYSNSKGKR------EQRELHQQQQQL------------LGSGGSGSSYSGAP 138
           LAAKK +  S S            +  H                  LG+ G         
Sbjct: 90  LAAKKASTSSFSPTPPTLDTTTNNKNTHSFSPSSSSFTTKKSHSLSLGNAGQ-------- 141

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
                        GF+ HVI+VAAGEDVGQKIM FMQQ + EICI+SASGSISNASLRQP
Sbjct: 142 -------------GFSAHVIAVAAGEDVGQKIMQFMQQHRGEICIMSASGSISNASLRQP 188

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           A+SGGNI YEGRF+I+SL+GSYVR + GGR+GGLSVCLS++DGQIIGGGVGGPLKAAGPV
Sbjct: 189 ASSGGNIMYEGRFDIISLTGSYVRNETGGRSGGLSVCLSNSDGQIIGGGVGGPLKAAGPV 248

Query: 259 QVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSVGFRSPIESYGRNPVRGNDDF 318
           QVIVGTF +++ KD SAG KGD S  KL SPV G   SS+GFR  ++S   NP+RGND+ 
Sbjct: 249 QVIVGTFFIDNKKDTSAGGKGDPSAGKLPSPV-GEPASSLGFRQTVDSSSGNPIRGNDEH 307

Query: 319 QTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMTGRTGRGGNQSPENGDYDQIA 378
           Q +GG+H+MIQ  G HV+P +  +W    D+R  AGYD++GRTG G +QSPENG YDQI 
Sbjct: 308 QAMGGSHYMIQQLGLHVTPPRTTEWGTHPDSR-HAGYDLSGRTGHGSHQSPENGGYDQIP 366

Query: 379 D 379
           D
Sbjct: 367 D 367

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833142|ref|XP_002884453.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata] gi|297330293|gb|EFH60712.1| hypothetical protein ARALYDRAFT_477717 [Arabidopsis lyrata subsp. lyrata]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 191/370 (51%), Positives = 255/370 (68%), Gaps = 22/370 (5%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 45  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 100

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +E+REL         +GG+ S+ SG+ 
Sbjct: 101 PLKRKRGRPRKYVTPEQALAAKKMASSASSSSAKERRELAAV------TGGTVSTNSGSS 154

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 155 KKSQLGSVGKTGQCFTPHIVNIAPGEDVAQKIMIFANQSKHELCVLSASGTISNASLRQP 214

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           AT+G N+ +EG++EI+SLSGSY+RT+ GG+TGGLS  LS++DGQIIGG +G  L AAGPV
Sbjct: 215 ATAGVNLPHEGQYEILSLSGSYIRTEQGGKTGGLSASLSASDGQIIGGAIGTHLTAAGPV 274

Query: 259 QVIVGTFQVESMKDVS-AGLKGDS--SGSKLASPVAGASVSSVGFRSPIESYGRNPVRGN 315
           QVI+GTFQ++  KD + +G KGD+  SGS+L SP +   +  +GF   +ES GRNP+RGN
Sbjct: 275 QVILGTFQLDRKKDAAGSGGKGDASNSGSRLTSPASTGQLLGIGFPPGMESTGRNPMRGN 334

Query: 316 DDFQT------IGGT-HFMIQ-PYGNHVSPTQAADWRGSLDT-RSSAGYDMTGRTGRGGN 366
           D+ Q       +GG  HFM+Q P G H++ ++ A+WRG  ++     G      +GR G+
Sbjct: 335 DEQQHHHHQPGLGGPHHFMMQAPQGMHMTHSRPAEWRGGGNSGLDGRGGGGYDLSGRIGH 394

Query: 367 QSPENGDYDQ 376
           +S ENGDY+Q
Sbjct: 395 ESSENGDYEQ 404

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30679188|ref|NP_187109.2| AT hook motif DNA-binding family protein [Arabidopsis thaliana] gi|119935918|gb|ABM06034.1| At3g04590 [Arabidopsis thaliana] gi|225898615|dbj|BAH30438.1| hypothetical protein [Arabidopsis thaliana] gi|332640581|gb|AEE74102.1| AT hook motif DNA-binding family protein [Arabidopsis thaliana]

 Score =  315 bits (806), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 195/374 (52%), Positives = 259/374 (69%), Gaps = 29/374 (7%)

Query: 19  PTATTTSGAAATTGPSPTNGLLPSQHQHHNNNNNNDGGGGGGGMVYPHSVASSAMTSTLE 78
           PT   T+ +     PS  NGL P Q Q  +  N+    G     VYPHSV SSA+T+ +E
Sbjct: 47  PTTVATTASTGNAVPSSNNGLFPPQPQPQHQPND----GSSSLAVYPHSVPSSAVTAPME 102

Query: 79  PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHQQQQQLLGSGGSGSSYSGAP 138
           P K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL         +GG+ S+ SG+ 
Sbjct: 103 PVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRRELAAV------TGGTVSTNSGSS 156

Query: 139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
            KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QSK E+C+LSASG+ISNASLRQP
Sbjct: 157 KKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQSKHELCVLSASGTISNASLRQP 216

Query: 199 ATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPV 258
           A SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS++DGQIIGG +G  L AAGPV
Sbjct: 217 APSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLSASDGQIIGGAIGSHLTAAGPV 276

Query: 259 QVIVGTFQVESMKDVS-AGLKGDS--SGSKLASPVAGASVSSVGFRSPIESYGRNPVRGN 315
           QVI+GTFQ++  KD + +G KGD+  SGS+L SPV+   +  +GF   +ES GRNP+RGN
Sbjct: 277 QVILGTFQLDRKKDAAGSGGKGDASNSGSRLTSPVSSGQLLGMGFPPGMESTGRNPMRGN 336

Query: 316 DDFQT-------IGGT-HFMIQ-PYGNHVSPTQAADWRG----SLDTRSSAGYDMTGRTG 362
           D+          +GG  HFM+Q P G H++ ++ ++WRG      D R   GYD++GR  
Sbjct: 337 DEQHDHHHHQAGLGGPHHFMMQAPQGIHMTHSRPSEWRGGGNSGHDGRGGGGYDLSGRI- 395

Query: 363 RGGNQSPENGDYDQ 376
             G++S ENGDY+Q
Sbjct: 396 --GHESSENGDYEQ 407

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561895|ref|XP_002521956.1| DNA binding protein, putative [Ricinus communis] gi|223538760|gb|EEF40360.1| DNA binding protein, putative [Ricinus communis]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 198/321 (61%), Positives = 239/321 (74%), Gaps = 16/321 (4%)

Query: 62  MVYPHSV--ASSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELH 118
           MVYPHSV  +++A++S  +E  ++KRGRPRKYGTPEQALAAKKTA+ S++     +R   
Sbjct: 57  MVYPHSVGPSTAAVSSAPVESPRRKRGRPRKYGTPEQALAAKKTASSSSNAVAARERREA 116

Query: 119 QQQQQLLGSGGSGSSYSGAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSK 178
                   SG S           QL  +GN GQGFTPHVISV+AGEDV QKIMLFMQQ +
Sbjct: 117 AAASSPSYSGFSSRK------SQQLVALGNAGQGFTPHVISVSAGEDVAQKIMLFMQQCR 170

Query: 179 REICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSS 238
           RE+CILSASGSISNASLRQPATSGGNITYEGRFEI+SLSGSYVRT++GGR GGLSVCLS+
Sbjct: 171 REMCILSASGSISNASLRQPATSGGNITYEGRFEIISLSGSYVRTEIGGRAGGLSVCLSN 230

Query: 239 TDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKDVSAGLKGDSSGSKLASPVAGASVSSV 298
           +DGQIIGGG+GGPL A GPVQVI+GTF V++ KDV +G K D+S SKL SP  GAS+S++
Sbjct: 231 SDGQIIGGGIGGPLIAGGPVQVIIGTFVVDNKKDVGSGGKVDASSSKLPSPGGGASMSNI 290

Query: 299 GFRSPIESYGRNPVRGNDDFQTIGGTHFMIQPYGNHVSPTQAADWRGSLDTRSSAGYDMT 358
           GFR+P ++ GR+  RGNDD QT+GG  FMI P G H       DW    + R +A +++T
Sbjct: 291 GFRTPTDTSGRHTFRGNDDHQTMGGNPFMIPPRGMH-------DWSSGSEARVNATFELT 343

Query: 359 GRTGRGGNQSPENGDYDQIAD 379
           GR G G  QSPENGDY+Q  D
Sbjct: 344 GRRGHGARQSPENGDYEQYPD 364

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	379
TAIR|locus:2084983	411	AT3G04590 [Arabidopsis thalian	0.941	0.868	0.445	5.7e-75
TAIR|locus:2122684	404	AHL3 "AT-HOOK MOTIF NUCLEAR LO	0.530	0.497	0.410	7.7e-32
TAIR|locus:2051038	351	AT2G33620 [Arabidopsis thalian	0.509	0.549	0.412	2.6e-31
TAIR|locus:2153142	419	AHL4 "AT-HOOK MOTIF NUCLEAR LO	0.321	0.291	0.492	1.6e-30
TAIR|locus:2178505	386	AT5G46640 [Arabidopsis thalian	0.501	0.492	0.402	7.1e-29
TAIR|locus:2126946	318	AT4G00200 [Arabidopsis thalian	0.511	0.610	0.395	1.5e-28
TAIR|locus:2118091	356	AHL1 "AT-hook motif nuclear-lo	0.485	0.516	0.393	1.5e-28
TAIR|locus:2141045	439	AT4G17950 [Arabidopsis thalian	0.364	0.314	0.441	3.3e-28
TAIR|locus:2132599	334	AT4G22770 [Arabidopsis thalian	0.517	0.586	0.368	1.2e-26
TAIR|locus:2050766	348	AT2G45850 [Arabidopsis thalian	0.472	0.514	0.394	2.5e-26

TAIR|locus:2084983 AT3G04590 [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 176/395 (44%), Positives = 230/395 (58%)

Query:     7 QQLQQLNS-YFHHX--------XXXXXXXXXXXXXXXXXNGLLPSQHQHHXXXXXXXXXX 57
             QQ Q+L S YFHH                          NGL P Q Q            
Sbjct:    26 QQQQRLTSPYFHHQLQHHHHLPTTVATTASTGNAVPSSNNGLFPPQPQPQHQPNDGSSSL 85

Query:    58 XXXXMVYPHSVASSAMTSTLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQREL 117
                  VYPHSV SSA+T+ +EP K+KRGRPRKY TPEQALAAKK A+ ++S   +++REL
Sbjct:    86 A----VYPHSVPSSAVTAPMEPVKRKRGRPRKYVTPEQALAAKKLASSASSSSAKQRREL 141

Query:   118 HXXXXXXXXXXXXXXXXXXAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQS 177
                                +  KSQLG +G  GQ FTPH++++A GEDV QKIM+F  QS
Sbjct:   142 ------AAVTGGTVSTNSGSSKKSQLGSVGKTGQCFTPHIVNIAPGEDVVQKIMMFANQS 195

Query:   178 KREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLS 237
             K E+C+LSASG+ISNASLRQPA SGGN+ YEG++EI+SLSGSY+RT+ GG++GGLSV LS
Sbjct:   196 KHELCVLSASGTISNASLRQPAPSGGNLPYEGQYEILSLSGSYIRTEQGGKSGGLSVSLS 255

Query:   238 STDXXXXXXXXXXXXXXXXXXQVIVGTFQVESMKDVS-AGLKGDSS--GSKLXXXXXXXX 294
             ++D                  QVI+GTFQ++  KD + +G KGD+S  GS+L        
Sbjct:   256 ASDGQIIGGAIGSHLTAAGPVQVILGTFQLDRKKDAAGSGGKGDASNSGSRLTSPVSSGQ 315

Query:   295 XXXXXFRSPIESYGRNPVRGNDD------FQT-IGGTH-FMIQ-PYGNHVSPTQAADWRG 345
                  F   +ES GRNP+RGND+       Q  +GG H FM+Q P G H++ ++ ++WRG
Sbjct:   316 LLGMGFPPGMESTGRNPMRGNDEQHDHHHHQAGLGGPHHFMMQAPQGIHMTHSRPSEWRG 375

Query:   346 S----LDTRSSAGYDMTGRTGRGGNQSPENGDYDQ 376
                   D R   GYD++GR G   ++S ENGDY+Q
Sbjct:   376 GGNSGHDGRGGGGYDLSGRIG---HESSENGDYEQ 407

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122684 AHL3 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 87/212 (41%), Positives = 111/212 (52%)

Query:    65 PHSVASSAMTSTLEPAKKKRGRPRKY---GTPEQALAAK--KTAAYSNSKGKREQRELHX 119
             P S+      ++ E  KKKRGRPRKY   GT    L+     ++    S+    +R    
Sbjct:    70 PFSLTMPTENTSAEQLKKKRGRPRKYNPDGTLVVTLSPMPISSSVPLTSEFPPRKRGRGR 129

Query:   120 XXXXXXXXXXXXXXXXXAPGKSQLGGIGN---LGQGFTPHVISVAAGEDVGQKIMLFMQQ 176
                              +P  + L G+G    +G  FTPHV+ V AGEDV  KIM F QQ
Sbjct:   130 GKSNRWLKKSQMFQFDRSPVDTNLAGVGTADFVGANFTPHVLIVNAGEDVTMKIMTFSQQ 189

Query:   177 SKREICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLS 233
               R ICILSA+G ISN +LRQ  TSGG +TYEGRFEI+SL+GS+++ D GG   R GG+S
Sbjct:   190 GSRAICILSANGPISNVTLRQSMTSGGTLTYEGRFEILSLTGSFMQNDSGGTRSRAGGMS 249

Query:   234 VCLSSTDXXXXXXXXXXXXXXXXXXQVIVGTF 265
             VCL+  D                  QV+VGTF
Sbjct:   250 VCLAGPDGRVFGGGLAGLFLAAGPVQVMVGTF 281

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2051038 AT2G33620 [Arabidopsis thaliana (taxid:3702)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 87/211 (41%), Positives = 108/211 (51%)

Query:    70 SSAMTST-LEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXX 128
             S  MT T  EP KK+RGRPRKYG P+             S G                  
Sbjct:    85 SGGMTGTGSEPVKKRRGRPRKYG-PDSG---------EMSLGLNPGAPSFTVSQPSSGGD 134

Query:   129 XXXXXXXXAPGKS----QLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICIL 184
                      PG S    +L  +G+ G GFTPHV++V AGEDV  KIM       R +C+L
Sbjct:   135 GGEKKRGRPPGSSSKRLKLQALGSTGIGFTPHVLTVLAGEDVSSKIMALTHNGPRAVCVL 194

Query:   185 SASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTDX 241
             SA+G+ISN +LRQ ATSGG +TYEGRFEI+SLSGS+   +  G   RTGGLSV LSS D 
Sbjct:   195 SANGAISNVTLRQSATSGGTVTYEGRFEILSLSGSFHLLENNGQRSRTGGLSVSLSSPDG 254

Query:   242 XXXXXXXXXXXXXXXXXQVIVGTFQVESMKD 272
                              Q++VG+F  +  K+
Sbjct:   255 NVLGGSVAGLLIAASPVQIVVGSFLPDGEKE 285

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

TAIR|locus:2153142 AHL4 "AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 1.6e-30, Sum P(2) = 1.6e-30
 Identities = 62/126 (49%), Positives = 78/126 (61%)

Query:   144 GGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG 202
             GG   +    FTPHV++V AGEDV  KIM F QQ  R ICILSA+G ISN +LRQ  TSG
Sbjct:   168 GGPAEIVSPSFTPHVLTVNAGEDVTMKIMTFSQQGSRAICILSANGPISNVTLRQSMTSG 227

Query:   203 GNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTDXXXXXXXXXXXXXXXXXXQ 259
             G +TYEG FEI+SL+GS++ ++ GG   R GG+SV L+  D                  Q
Sbjct:   228 GTLTYEGHFEILSLTGSFIPSESGGTRSRAGGMSVSLAGQDGRVFGGGLAGLFIAAGPVQ 287

Query:   260 VIVGTF 265
             V+VG+F
Sbjct:   288 VMVGSF 293

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008283 "cell proliferation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2178505 AT5G46640 [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 81/201 (40%), Positives = 104/201 (51%)

Query:    81 KKKRGRPRKYGTPEQALA------AKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXX 134
             KKKRGRPRKY TP+ ++A      +   +A SNS G+    +                  
Sbjct:   102 KKKRGRPRKY-TPDGSIALGLAPTSPLLSAASNSYGEGGVGDSGGNGNSVDPPVKRNRGR 160

Query:   135 XXAPGKSQLGGIGNL-GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNA 193
                  K QL  +G   G GFTPHVI V  GED+  K+M F  Q  R ICILSASG++S  
Sbjct:   161 PPGSSKKQLDALGGTSGVGFTPHVIEVNTGEDIASKVMAFSDQGSRTICILSASGAVSRV 220

Query:   194 SLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTDXXXXXXXXXX 250
              LRQ + S G +TYEGRFEI++LSGS +  ++ G   R+G LSV L+  D          
Sbjct:   221 MLRQASHSSGIVTYEGRFEIITLSGSVLNYEVNGSTNRSGNLSVALAGPDGGIVGGSVVG 280

Query:   251 XXXXXXXXQVIVGTFQVESMK 271
                     QVIVG+F  E+ K
Sbjct:   281 NLVAATQVQVIVGSFVAEAKK 301

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2126946 AT4G00200 [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 81/205 (39%), Positives = 108/205 (52%)

Query:    73 MTSTLEPA-KKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXX 131
             M S+ E + KK+RGRPRKY      L +           KR + +L+             
Sbjct:    47 MPSSGEASGKKRRGRPRKYEANGAPLPSSSVPLVK----KRVRGKLNGFDMKKMHKTIGF 102

Query:   132 XXXXXAPGKSQLGGIGN-LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190
                    G    GG+G  +G  FTPHVI+V  GED+  +I+ F QQ  R ICILSA+G I
Sbjct:   103 HSSGERFGVG--GGVGGGVGSNFTPHVITVNTGEDITMRIISFSQQGPRAICILSANGVI 160

Query:   191 SNASLRQPATSGGNITYEGRFEIVSLSGSYVRTD-LG--GRTGGLSVCLSSTDXXXXXXX 247
             SN +LRQP + GG +TYEGRFEI+SLSGS++ T+  G  GR+GG+SV L+  D       
Sbjct:   161 SNVTLRQPDSCGGTLTYEGRFEILSLSGSFMETENQGSKGRSGGMSVSLAGPDGRVVGGG 220

Query:   248 XXXXXXXXXXXQVIVGTFQVESMKD 272
                        QV+VG+F     +D
Sbjct:   221 VAGLLIAATPIQVVVGSFITSDQQD 245

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2118091 AHL1 "AT-hook motif nuclear-localized protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 78/198 (39%), Positives = 103/198 (52%)

Query:    81 KKKRGRPRKYGTPEQALAAKKTAAYSNSKGKRE-----QRELHXXXXXXXXXXXXXXXXX 135
             KKKRGRPRKYG P+  + A      S++             +                  
Sbjct:    89 KKKRGRPRKYG-PDGTVVALSPKPISSAPAPSHLPPPSSHVIDFSASEKRSKVKPTNSFN 147

Query:   136 XAPGKSQLGGIG-----NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSI 190
                   Q+  +G     ++G  FTPH+I+V  GEDV  KI+ F QQ  R IC+LSA+G I
Sbjct:   148 RTKYHHQVENLGEWAPCSVGGNFTPHIITVNTGEDVTMKIISFSQQGPRSICVLSANGVI 207

Query:   191 SNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTDXXXXXXX 247
             S+ +LRQP +SGG +TYEGRFEI+SLSGS++  D GG   RTGG+SV L+S D       
Sbjct:   208 SSVTLRQPDSSGGTLTYEGRFEILSLSGSFMPNDSGGTRSRTGGMSVSLASPDGRVVGGG 267

Query:   248 XXXXXXXXXXXQVIVGTF 265
                        QV+VG+F
Sbjct:   268 LAGLLVAASPVQVVVGSF 285

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2141045 AT4G17950 [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 3.3e-28, Sum P(2) = 3.3e-28
 Identities = 64/145 (44%), Positives = 82/145 (56%)

Query:   139 GKSQLGGIGNLGQ-GFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQ 197
             GK QL  +G  G  GFTPHVI V  GED+  KI+ F  Q  R ICILSA+G+++N  LRQ
Sbjct:   206 GKKQLDALGGTGGVGFTPHVIEVKTGEDIATKILAFTNQGPRAICILSATGAVTNVMLRQ 265

Query:   198 PATSG--GNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSSTDXXXXXXXXXXXX 252
                S   G + YEGRFEI+SLSGS++ ++  G   +TG LSV L+  +            
Sbjct:   266 ANNSNPTGTVKYEGRFEIISLSGSFLNSESNGTVTKTGNLSVSLAGHEGRIVGGCVDGML 325

Query:   253 XXXXXXQVIVGTFQVESMKDV-SAG 276
                   QVIVG+F  +  K   SAG
Sbjct:   326 VAGSQVQVIVGSFVPDGRKQKQSAG 350

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2132599 AT4G22770 [Arabidopsis thaliana (taxid:3702)]

 Score = 300 (110.7 bits), Expect = 1.2e-26, P = 1.2e-26
 Identities = 76/206 (36%), Positives = 105/206 (50%)

Query:    70 SSAMTS-TLEPAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXX 128
             S+AM   +  P KK+RGRPRKYG    A+        S +       +            
Sbjct:    60 SAAMDGFSSGPIKKRRGRPRKYGHDGAAVTLSPNPISSAAPTTSHVIDFSTTSEKRGKMK 119

Query:   129 XXXXX-XXXAPGKSQLGGIG-----NLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREIC 182
                         K Q+  +G     +    FTPH+I+V AGEDV ++I+ F QQ    IC
Sbjct:   120 PATPTPSSFIRPKYQVENLGEWSPSSAAANFTPHIITVNAGEDVTKRIISFSQQGSLAIC 179

Query:   183 ILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG---RTGGLSVCLSST 239
             +L A+G +S+ +LRQP +SGG +TYEGRFEI+SLSG+++ +D  G   RTGG+SV L+S 
Sbjct:   180 VLCANGVVSSVTLRQPDSSGGTLTYEGRFEILSLSGTFMPSDSDGTRSRTGGMSVSLASP 239

Query:   240 DXXXXXXXXXXXXXXXXXXQVIVGTF 265
             D                  QV+VGTF
Sbjct:   240 DGRVVGGGVAGLLVAATPIQVVVGTF 265

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2050766 AT2G45850 [Arabidopsis thaliana (taxid:3702)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 75/190 (39%), Positives = 94/190 (49%)

Query:    79 PAKKKRGRPRKYGTPEQALAAKKTAAYSNSKGKREQRELHXXXXXXXXXXXXXXXXXXAP 138
             P K+KRGRPRKYG       A  +++ S        +                      P
Sbjct:    96 PMKRKRGRPRKYGQDGSVSLALSSSSVSTITPNNSNKRGRGRPPGSGKKQRMASVGELMP 155

Query:   139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP 198
               S        G  FTPHVI+V+ GED+  K++ F QQ  R IC+LSASG++S A+L QP
Sbjct:   156 SSS--------GMSFTPHVIAVSIGEDIASKVIAFSQQGPRAICVLSASGAVSTATLIQP 207

Query:   199 ATSGGNITYEGRFEIVSLSGSY-VRTD--LGGRTGGLSVCLSSTDXXXXXXXXXXXXXXX 255
             + S G I YEGRFEI++LS SY V TD     RTG LSV L+S D               
Sbjct:   208 SASPGAIKYEGRFEILALSTSYIVATDGSFRNRTGNLSVSLASPDGRVIGGAIGGPLIAA 267

Query:   256 XXXQVIVGTF 265
                QVIVG+F
Sbjct:   268 SPVQVIVGSF 277

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.02010010 hypothetical protein (366 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	379
pfam03479	120	pfam03479, DUF296, Domain of unknown function (DUF	6e-36
cd11378	113	cd11378, DUF296, Domain of unknown function found	3e-30
COG1661	141	COG1661, COG1661, Predicted DNA-binding protein wi	7e-04

>gnl|CDD|217587 pfam03479, DUF296, Domain of unknown function (DUF296)

 Score =  126 bits (320), Expect = 6e-36
 Identities = 47/117 (40%), Positives = 68/117 (58%), Gaps = 6/117 (5%)

Query: 153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQP---ATSGGNITYEG 209
             PHV+ +  GED+ + +  F +Q      +LS  G++SN +LRQP   A S G +T EG
Sbjct: 1   GRPHVLRLEPGEDLVESLEAFARQRGIGAAVLSGIGAVSNVTLRQPDEEAKSYGVVTLEG 60

Query: 210 RFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGV-GGPLKAAGPVQVIVGTF 265
           RFEI+SLSG+   +  G  +G L V L+  DGQ++GG +  G + A G V V   +F
Sbjct: 61  RFEILSLSGTI--SPGGKPSGHLHVSLADPDGQVVGGHLAEGTVFATGEVVVTELSF 115

This putative domain is found in proteins that contain AT-hook motifs pfam02178, which strongly suggests a DNA-binding function for the proteins as a whole. There are three highly conserved histidine residues, eg at 117, 119 and 133 in Reut_B5223, which should be a structurally conserved metal-binding unit, based on structural comparison with known metal-binding structures. The proteins should work as trimers. Length = 120

>gnl|CDD|211390 cd11378, DUF296, Domain of unknown function found in archaea, bacteria, and plants

 Score =  111 bits (280), Expect = 3e-30
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 5/115 (4%)

Query: 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPAT---SGGNITYEGR 210
            P V+ +  GED+ + +  F ++   +  +LS  G++SNA+LR P         +T+EGR
Sbjct: 1   RPFVLRLEPGEDLVESLEAFAREEGIKAAVLSGIGAVSNATLRYPDPEPKEYETVTFEGR 60

Query: 211 FEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTF 265
            EI+SLSG+    D G  +G L V L+ +DG++IGG + G L  AG V+V++G  
Sbjct: 61  LEILSLSGNISPDD-GKPSGHLHVSLADSDGRVIGGHLLGAL-VAGTVEVVIGEL 113

This domain is found in proteins that contain AT-hook motifs, which suggests a role in DNA-binding for the proteins as a whole. Three conserved histidine residues appear to form a zinc-binding site, and the domain has been observed to form homotrimers. It co-occurs with a thioredoxin-like domain in uncharacterized cyanobacterial proteins. Length = 113

>gnl|CDD|224575 COG1661, COG1661, Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)

Query: 163 GEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNITYEGRFEIVSLSGS 219
           GED+  ++  F +Q      +++A G++ +A LR           I      E++SL G+
Sbjct: 19  GEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGN 78

Query: 220 YVRTDLGGRTGGLSVCLSSTDGQIIGG 246
               D       L   L   +G  +GG
Sbjct: 79  IALDDPFVH---LHAALGDENGITLGG 102

Length = 141

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	379
PF03479	120	DUF296: Domain of unknown function (DUF296); Inter	99.96
COG1661	141	Predicted DNA-binding protein with PD1-like DNA-bi	99.93
PF02178	13	AT_hook: AT hook motif; InterPro: IPR017956 AT hoo	95.7
smart00384	26	AT_hook DNA binding domain with preference for A/T	95.64
PF14621	219	RFX5_DNA_bdg: RFX5 DNA-binding domain	83.02

>PF03479 DUF296: Domain of unknown function (DUF296); InterPro: IPR005175 This putative conserved domain is found in proteins that contain AT-hook motifs IPR000637 from INTERPRO, suggesting a DNA-binding function for the proteins as a whole, however, the function of this domain is unknown

Probab=99.96  E-value=3.7e-29  Score=212.17  Aligned_cols=114  Identities=26%  Similarity=0.352  Sum_probs=98.6

Q ss_pred             ceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCC--CCCCceeeecceeEEEeeeeeecCCCCCccc
Q 016976          153 FTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPA--TSGGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       153 ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~--~s~~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      ||+|++||++||||+++|++||+++++.+|+|++||+|++|+|++++  ..+..++|+|+|||+||+|||+. .+++++.
T Consensus         1 ~r~~~~rl~~Gedl~~~l~~~~~~~~i~~~~is~iGsl~~~~l~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~-~~g~~~~   79 (120)
T PF03479_consen    1 GRVFVIRLDPGEDLLESLEAFAREHGIRSGVISGIGSLSNVTLGYYDPPSYYEPLEFEGPFEIISLSGTISP-EDGKPFV   79 (120)
T ss_dssp             EEEEEEEEETTSBHHHHHHHHHHHHT-SSEEEEEEEEEEEEEEEEEETTTEEEEEEEESEEEEEEEEEEEEE-ETTEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHHHHCCCcEEEEEEEeEEeEEEEEEecccCCcceEEecccEEEEEeEEEEEC-CCCCCcc
Confidence            79999999999999999999999999999999999999999999994  45778999999999999999998 5678999


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                      ||||+|+|.||+++||||..+.+ ..++||+|..+...
T Consensus        80 HlHisl~~~~g~v~gGHl~~g~v-~~t~Ev~i~~~~~~  116 (120)
T PF03479_consen   80 HLHISLADPDGQVFGGHLLEGTV-FATAEVVITELSGI  116 (120)
T ss_dssp             EEEEEEE-TTSEEEEEEEEEEEE-EEEEEEEEEEETTE
T ss_pred             eEEEEEECCCCeEEeeEeCCCEE-eEEEEEEEEEecCc
Confidence            99999999999999999994444 33566666555443

Overexpression of a protein containing this domain, Q9S7C9 from SWISSPROT, in Arabidopsis thaliana causes late flowering and modified leaf development []. ; PDB: 2DT4_A 2P6Y_A 3HWU_A 3HTN_A 2NMU_A 2H6L_A 2HX0_A.

>COG1661 Predicted DNA-binding protein with PD1-like DNA-binding motif [General function prediction only]

Probab=99.93  E-value=2.4e-25  Score=196.77  Aligned_cols=115  Identities=20%  Similarity=0.244  Sum_probs=107.6

Q ss_pred             CCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCC
Q 016976          151 QGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGG  227 (379)
Q Consensus       151 ~~ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~  227 (379)
                      +.-+.+++||++|||+++.|.+||+++++.+++++|||+|++++|++++.+   |.+++++|+||||||.|||+.++   
T Consensus         7 ~~gr~~~~Rld~G~d~~~~l~~~a~~~~i~aa~v~~iGal~~~~l~~~~~~~~~y~~~~~~e~~EvlSL~G~i~~~~---   83 (141)
T COG1661           7 SSGRVIALRLDPGEDLFSELEAFAEQEDIHAAVVTAIGALRDAKLRYFDPEEKEYETIPVNEPLEVLSLLGNIALDD---   83 (141)
T ss_pred             ccceEEEEEeCCCccHHHHHHHHHHhcCceEEEEEEeeeeeeeEEEEecCCCCceEEEecCCcEEEEEecceeecCC---
Confidence            345889999999999999999999999999999999999999999999853   78999999999999999999986   


Q ss_pred             ccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccccc
Q 016976          228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVES  269 (379)
Q Consensus       228 ~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~~  269 (379)
                      |+.|||++|++++|.++||||.+++|.. ++||+|..+....
T Consensus        84 p~~HlHa~l~~~~G~~~GGHL~~~~V~~-t~Ev~I~el~~~~  124 (141)
T COG1661          84 PFVHLHAALGDENGITLGGHLLEGEVFP-TAEVFIRELPGEL  124 (141)
T ss_pred             CcEEEEEEEecCCCcEEeeeecccEEeE-EEEEEEEEccccc
Confidence            8999999999999999999999999997 8999999998773

>PF02178 AT_hook: AT hook motif; InterPro: IPR017956 AT hooks are DNA-binding motifs with a preference for A/T rich regions

Probab=95.70  E-value=0.0038  Score=35.70  Aligned_cols=11  Identities=73%  Similarity=1.202  Sum_probs=4.6

Q ss_pred             cccCCCCCCCC
Q 016976           81 KKKRGRPRKYG   91 (379)
Q Consensus        81 KkKRGRPRKYg   91 (379)
                      +|+||||||+.
T Consensus         1 ~r~RGRP~k~~   11 (13)
T PF02178_consen    1 KRKRGRPRKNA   11 (13)
T ss_dssp             S--SS--TT--
T ss_pred             CCcCCCCcccc
Confidence            68999999985

These motifs are found in a variety of proteins, including the high mobility group (HMG) proteins [], in DNA-binding proteins from plants [] and in hBRG1 protein, a central ATPase of the human switching/sucrose non-fermenting (SWI/SNF) remodeling complex []. High mobility group (HMG) proteins are a family of relatively low molecular weight non-histone components in chromatin []. HMG-I and HMG-Y (HMGA) are proteins of about 100 amino acid residues which are produced by the alternative splicing of a single gene. HMG-I/Y proteins bind preferentially to the minor groove of AT-rich regions in double-stranded DNA in a non-sequence specific manner [, ]. It is suggested that these proteins could function in nucleosome phasing and in the 3' end processing of mRNA transcripts. They are also involved in the transcription regulation of genes containing, or in close proximity to, AT-rich regions. ; GO: 0003677 DNA binding; PDB: 2EZE_A 2EZD_A 2EZF_A 2EZG_A.

>smart00384 AT_hook DNA binding domain with preference for A/T rich regions

Probab=95.64  E-value=0.0057  Score=40.93  Aligned_cols=14  Identities=57%  Similarity=0.873  Sum_probs=11.6

Q ss_pred             cccCCCCCCCCCCC
Q 016976           81 KKKRGRPRKYGTPE   94 (379)
Q Consensus        81 KkKRGRPRKYg~~~   94 (379)
                      |||||||||+..+.
T Consensus         1 kRkRGRPrK~~~~~   14 (26)
T smart00384        1 KRKRGRPRKAPKDX   14 (26)
T ss_pred             CCCCCCCCCCCCcc
Confidence            79999999997543

Small DNA-binding motif first described in the high mobility group non-histone chromosomal protein HMG-I(Y).

>PF14621 RFX5_DNA_bdg: RFX5 DNA-binding domain

Probab=83.02  E-value=0.44  Score=45.22  Aligned_cols=12  Identities=75%  Similarity=1.115  Sum_probs=10.6

Q ss_pred             cccccCCCCCCC
Q 016976           79 PAKKKRGRPRKY   90 (379)
Q Consensus        79 ~~KkKRGRPRKY   90 (379)
                      -.|||||||||-
T Consensus        66 dAKRKRGRPRKK   77 (219)
T PF14621_consen   66 DAKRKRGRPRKK   77 (219)
T ss_pred             hhhhhcCCCccC
Confidence            479999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	379
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	9e-22
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	7e-21
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	8e-17
3htn_A	149	Putative DNA binding protein; DUF269 family protei	5e-10
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	2e-08
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	1e-07

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A Length = 154

 Score = 89.7 bits (222), Expect = 9e-22
 Identities = 24/123 (19%), Positives = 55/123 (44%), Gaps = 7/123 (5%)

Query: 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYE 208
                 + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR         +  
Sbjct: 15  ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLT 73

Query: 209 GRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268
           G FE++SL+G+   T        L + +S   G ++GG +         +++++G     
Sbjct: 74  GTFEVISLNGTLELTG-----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL 128

Query: 269 SMK 271
           +  
Sbjct: 129 TFS 131

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae} Length = 142

 Score = 86.9 bits (215), Expect = 7e-21
 Identities = 23/112 (20%), Positives = 46/112 (41%), Gaps = 7/112 (6%)

Query: 155 PHVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYEGRFEI 213
              + +  G D+ Q+I+  +QQ +     I S  G +S   +R    S   +     FEI
Sbjct: 4   LIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLA-DSVSTLQVSAPFEI 62

Query: 214 VSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTF 265
           +SLSG+            L + ++   G++ GG +          ++++  +
Sbjct: 63  LSLSGTLTYQH-----CHLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHY 109

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii} Length = 143

 Score = 75.8 bits (186), Expect = 8e-17
 Identities = 25/133 (18%), Positives = 50/133 (37%), Gaps = 4/133 (3%)

Query: 149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNI 205
           +      ++  V  GE++   I  F ++   E  I++  G++ N  +    +       I
Sbjct: 5   MFSLGRTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVI 64

Query: 206 TYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTF 265
             +G +E++SL G+    D G       V L + +G + GG +         + +     
Sbjct: 65  PLKGSYELISLIGNVSLKD-GEPFVHAHVSLGNEEGIVFGGHLVEGEVFVAEIFLQELKG 123

Query: 266 QVESMKDVSAGLK 278
           +    K    GL 
Sbjct: 124 EKIERKPTKYGLA 136

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} Length = 149

 Score = 56.5 bits (136), Expect = 5e-10
 Identities = 22/147 (14%), Positives = 56/147 (38%), Gaps = 8/147 (5%)

Query: 136 GAPGKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASL 195
           GA  +  +     +G  +   ++S+    ++ + +  F ++       ++  G+I   +L
Sbjct: 1   GAQNEKNMYSYKKIGNKY---IVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTL 57

Query: 196 R---QPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGV-GGP 251
           R       +  + T+  + EI +L+G+    +       L + +  +D   + G +    
Sbjct: 58  RFFNPKTKAYDDKTFREQMEISNLTGNISSMN-EQVYLHLHITVGRSDYSALAGHLLSAI 116

Query: 252 LKAAGPVQVIVGTFQVESMKDVSAGLK 278
              AG   V   + ++    +   GL 
Sbjct: 117 QNGAGEFVVEDYSERISRTYNPDLGLN 143

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3 Length = 146

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 27/133 (20%), Positives = 52/133 (39%), Gaps = 6/133 (4%)

Query: 150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNIT 206
            +     ++ +  G+D+ ++I  F+++       +SA G++ +A +    Q         
Sbjct: 6   FEVGKGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKE 65

Query: 207 YEGRFEIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGV-GGPLKAAGPVQVIVGTF 265
                EI+SLSG+    D       + V L   DG++ GG +    + A     + +   
Sbjct: 66  LMEPLEILSLSGNVSMKD-SKPFCHIHVLL-GKDGEVYGGHLFSAEVFACEVFVLPLSGE 123

Query: 266 QVESMKDVSAGLK 278
             E   D   GL 
Sbjct: 124 APERAFDEQTGLF 136

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha} Length = 147

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 17/117 (14%), Positives = 40/117 (34%), Gaps = 3/117 (2%)

Query: 154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR--QPATSGGNITYEGRF 211
           T +++ +  G++V Q +    +            G +S A+           +       
Sbjct: 13  TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYRNV 72

Query: 212 EIVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE 268
           E+ +++GS    + G  +      ++    Q  GG + G     G  ++ V  +   
Sbjct: 73  EMANMTGSIAWKE-GKPSIHAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQR 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	379
3htn_A	149	Putative DNA binding protein; DUF269 family protei	99.95
2dt4_A	143	Hypothetical protein PH0802; PPC domain, structura	99.95
2p6y_A	142	Hypothetical protein VCA0587; NESG, Q9KM02_vibch,	99.94
2h6l_A	146	Hypothetical protein; NESG GR103, structural genom	99.94
2hx0_A	154	Putative DNA-binding protein; NESG, PSI-2, SCR59,	99.94
3hwu_A	147	Putative DNA-binding protein; YP_299413.1, structu	99.92

>3htn_A Putative DNA binding protein; DUF269 family protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE 1PE; 1.50A {Bacteroides thetaiotaomicron vpi-5482} SCOP: d.290.1.0

Probab=99.95  E-value=1e-27  Score=209.54  Aligned_cols=124  Identities=14%  Similarity=0.218  Sum_probs=107.3

Q ss_pred             CCcccccCCCCCCCceeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEE
Q 016976          139 GKSQLGGIGNLGQGFTPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVS  215 (379)
Q Consensus       139 ~K~ql~~lg~~g~~ftphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILS  215 (379)
                      +++++......|   +.|++||++||||+++|.+||+++++..|+|+++|+|++|+|++++.+   |..++|+|+|||+|
T Consensus         4 ~~~~~~~y~~~g---r~~~lrl~~Gedl~~~l~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EI~s   80 (149)
T 3htn_A            4 NEKNMYSYKKIG---NKYIVSINNHTEIVKALNAFCKEKGILSGSINGIGAIGELTLRFFNPKTKAYDDKTFREQMEISN   80 (149)
T ss_dssp             ---CCEEEEEET---TEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEECTTTCCEEEEEECSCEEEEE
T ss_pred             CcccEEEEeecC---CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEEEeeeEEEEccCCCcccceeEEecCceEEEE
Confidence            344444444444   899999999999999999999999999888899999999999998764   45789999999999


Q ss_pred             eeeeeecCCCCCccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccc
Q 016976          216 LSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQV  267 (379)
Q Consensus       216 LsGnis~~e~G~~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~  267 (379)
                      |+|||++. +|+++.||||+|+|+||+|+||||..+.| ..++||+|..+..
T Consensus        81 l~Gti~~~-dG~p~~HlH~sl~~~~G~v~gGHl~~g~V-~~t~Ei~i~~~~~  130 (149)
T 3htn_A           81 LTGNISSM-NEQVYLHLHITVGRSDYSALAGHLLSAIQ-NGAGEFVVEDYSE  130 (149)
T ss_dssp             EEEEEEEE-TTEEEEEEEEEEECTTSBEEEEEEEEEEE-EEEEEEEEEECCS
T ss_pred             eEEEEEcc-CCCceEEEEEEEECCCCCEEeEEeCCCEE-EEEEEEEEEEcCC
Confidence            99999997 57899999999999999999999998755 4789999998866

>2dt4_A Hypothetical protein PH0802; PPC domain, structural genomics, unknown function; 1.60A {Pyrococcus horikoshii}

Probab=99.95  E-value=1.3e-27  Score=206.69  Aligned_cols=112  Identities=20%  Similarity=0.266  Sum_probs=102.5

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      ++|++||++||||+++|++||+++++..|+|+++|+|++|+|+|++.+   |..++++|+|||+||+|||++. +|+++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~~~~~~~~g~~EIlsl~Gti~~~-~g~p~~   88 (143)
T 2dt4_A           10 RTYLFRVPEGEELLTYIKNFCKKEGIETAIINGIGTLKNPKIGYFLEEKKEYKVIPLKGSYELISLIGNVSLK-DGEPFV   88 (143)
T ss_dssp             EEEEEEECTTCBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEECCSEEEEEEEEEEEEEE-TTEEEE
T ss_pred             CEEEEEECCCCcHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEEeecCccCcceeEeecCCEEEEEeEEEEECC-CCCcee
Confidence            799999999999999999999999988888899999999999999765   3478999999999999999996 478999


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                      ||||+|+|+||+++||||..++ .+ ++||+|.+|...
T Consensus        89 HlHi~l~~~~G~v~GGHl~~g~-v~-t~Ev~i~~~~~~  124 (143)
T 2dt4_A           89 HAHVSLGNEEGIVFGGHLVEGE-VF-VAEIFLQELKGE  124 (143)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEE-EE-EEEEEEEEEEES
T ss_pred             eEEEEEECCCCCEeCCCCCCCc-eE-EEEEEEEEcCCC
Confidence            9999999999999999999777 44 899999998774

>2p6y_A Hypothetical protein VCA0587; NESG, Q9KM02_vibch, VCR80, structural genomics, PSI-2, prote structure initiative; 1.63A {Vibrio cholerae}

Probab=99.94  E-value=2.8e-26  Score=198.80  Aligned_cols=111  Identities=20%  Similarity=0.314  Sum_probs=99.5

Q ss_pred             CceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCCccc
Q 016976          152 GFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       152 ~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      .|++|++||++||||+++|.+||+++++ ++||++++|+|++|+||+|+... .++++|+|||+||+|||+++     ..
T Consensus         1 ~~r~~~lrL~~Gedl~~~i~~~~~~~~i~~a~v~~~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~-----~~   74 (142)
T 2p6y_A            1 MIHLIALRLTRGMDLKQQIVQLVQQHRIHAGSIASCVGCLSTLHIRLADSVS-TLQVSAPFEILSLSGTLTYQ-----HC   74 (142)
T ss_dssp             CCEEEEEEECTTCBHHHHHHHHHHHTTCSSEEEEEEEEEEEEEEEECTTSSC-EEEECSCEEEEEEEEEECSS-----CE
T ss_pred             CCcEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEEEEEeEEEECCCCCc-cEecCCcEEEEEeEEEEeCC-----CC
Confidence            3899999999999999999999999996 68888999999999999998754 68899999999999999984     37


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                      ||||+|+|+||+++||||+..++...++||+|..|...
T Consensus        75 HlHisl~~~~G~v~GGHl~~g~~V~~t~Ev~i~~~~~~  112 (142)
T 2p6y_A           75 HLHIAVADAQGRVWGGHLLEGNLINTTAELMIHHYPQH  112 (142)
T ss_dssp             EEEEEEECTTSCEEEEEECTTCEECC-EEEEEEECTTE
T ss_pred             EEEEEEECCCCCEEccccCCCCeEEEEEEEEEEEccCC
Confidence            99999999999999999996455568999999998774

>2h6l_A Hypothetical protein; NESG GR103, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.00A {Archaeoglobus fulgidus} SCOP: d.290.1.3

Probab=99.94  E-value=5.2e-27  Score=203.48  Aligned_cols=111  Identities=21%  Similarity=0.221  Sum_probs=102.2

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCCC---CceeeecceeEEEeeeeeecCCCCCccc
Q 016976          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATSG---GNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s~---~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      ++|+|||++||||+++|++||+++++..|+|+++|+|++|+|++++...   ..++++|+|||+||+|||++. +|+++.
T Consensus        10 r~~~lrl~~Gedl~~~i~~~~~~~~i~~a~vs~iGsl~~~~l~~~~~~~~~y~~~~~~g~~EIlsl~Gti~~~-dg~p~~   88 (146)
T 2h6l_A           10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMK-DSKPFC   88 (146)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEE-TTEEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEEEEEEEEEEECCCCCCcceeEEEecCcEEEEEeEEEEECC-CCCcee
Confidence            6999999999999999999999999887777999999999999997754   478999999999999999996 478999


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                      ||||+|+ .||+++||||+.++|  .++||||.+|...
T Consensus        89 HlHi~l~-~~G~v~gGHl~~g~V--~t~Evvi~~~~~~  123 (146)
T 2h6l_A           89 HIHVLLG-KDGEVYGGHLFSAEV--FACEVFVLPLSGE  123 (146)
T ss_dssp             EEEEEEE-EBTEEEEEEEEEEEE--EEEEEEEEECBSC
T ss_pred             eEEEEEC-CCCcEEeeecCCCEE--EEEEEEEEEcCCC
Confidence            9999999 999999999998886  5899999999874

>2hx0_A Putative DNA-binding protein; NESG, PSI-2, SCR59, structural genomics, protein structure initiative; 1.55A {Salmonella choleraesuis} SCOP: d.290.1.3 PDB: 2nmu_A

Probab=99.94  E-value=4.1e-26  Score=200.38  Aligned_cols=114  Identities=20%  Similarity=0.351  Sum_probs=102.3

Q ss_pred             CCCCceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCC
Q 016976          149 LGQGFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGG  227 (379)
Q Consensus       149 ~g~~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~  227 (379)
                      ....+++|+|||++||||+++|.+||+++++ ++||++++|+|++|+|||++... .++|+|+|||+||+|||++.    
T Consensus        14 ~~~~~r~~vlrL~~Gedl~~~i~~~~~~~gi~~a~v~s~iGsl~~~~l~~~~~~~-~~~~~g~~EIlsl~Gti~~~----   88 (154)
T 2hx0_A           14 NASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQEA-TTSLTGTFEVISLNGTLELT----   88 (154)
T ss_dssp             SCCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTCSS-CEEEEEEEEEEEEEEEEETT----
T ss_pred             CCCCccEEEEEECCCCcHHHHHHHHHHHhCCCEEEEEEeEeeeEEeEEEccCCCc-cEecCCcEEEEEeeeeEeCC----
Confidence            4567899999999999999999999999996 67888999999999999998755 78899999999999999985    


Q ss_pred             ccceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          228 RTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       228 ~~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                       ..||||+|+|.||+++||||+..+++..++||+|..|...
T Consensus        89 -~~HlHisl~~~~G~v~GGHL~~g~~V~~t~Ev~i~~~~~~  128 (154)
T 2hx0_A           89 -GEHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL  128 (154)
T ss_dssp             -EEEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTE
T ss_pred             -CCEEEEEEECCCCCEEccccCCCCcEEEEEEEEEEEccCc
Confidence             3799999999999999999997544447899999998764

>3hwu_A Putative DNA-binding protein; YP_299413.1, structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.30A {Ralstonia eutropha}

Probab=99.92  E-value=1.8e-25  Score=194.77  Aligned_cols=112  Identities=17%  Similarity=0.188  Sum_probs=101.5

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      +.+++||++||||+++|.+||+++++..++|++||++++|+|++++.+   |...+++ ++||+||+|||+..| |+++.
T Consensus        13 ~~~~~rL~~Gedl~~~l~~~~~~~~i~~a~v~~iGsl~~~~l~~~~~~~~~y~~~~~~-~~Ei~sl~Gtis~~d-G~p~~   90 (147)
T 3hwu_A           13 TGYLMVLRHGDNVLQNLEQLARDEHIPSASFVGIGFMSEATFGFYDFGRKQFDPKTYR-NVEMANMTGSIAWKE-GKPSI   90 (147)
T ss_dssp             TEEEEEEETTCBHHHHHHHHHHHTTCSEEEEEEEEEEEEEEEEEEETTTTEEEEEEEE-EEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCCEEEEEEEecccEEEEEeecCCcCccccEEec-CcEEEEEEEEEEcCC-CCceE
Confidence            569999999999999999999999999999999999999999999765   3466788 899999999999865 78999


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQV  267 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~  267 (379)
                      |||++|+|.||+++||||..+.|.+.++||||..+..
T Consensus        91 HlH~~~~d~~g~v~GGHL~~g~V~~~t~Ei~i~~~~~  127 (147)
T 3hwu_A           91 HAHGTVTDGTFQGAGGHLLGLTVGTGSCEITVTVYPQ  127 (147)
T ss_dssp             EEEEEEECTTCCEEEEEEEEEEEEEEEEEEEEEEESS
T ss_pred             EEEEEEECCCCcEEeeEecCcEEEeEeEEEEEEEcCC
Confidence            9999999999999999999887776689999987654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	379
d2hx0a1	136	d.290.1.3 (A:6-141) Hypothetical protein STM3071 {	1e-19
d2h6la1	138	d.290.1.3 (A:1-138) Hypothetical protein AF0104 {A	3e-17

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]} Length = 136

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 7/117 (5%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSK-REICILSASGSISNASLRQPATSGGNITYEGRFEIV 214
           + + +  G++V  ++  F+QQ++ R   I   +GS+++ +LR         +  G FE++
Sbjct: 9   YALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAG-QEATTSLTGTFEVI 67

Query: 215 SLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMK 271
           SL+G+   T        L + +S   G ++GG +         +++++G     +  
Sbjct: 68  SLNGTLELTG-----EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPALTFS 119

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]} Length = 138

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 75.4 bits (185), Expect = 3e-17
 Identities = 23/126 (18%), Positives = 44/126 (34%), Gaps = 4/126 (3%)

Query: 156 HVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLR---QPATSGGNITYEGRFE 212
            ++ +  G+D+ ++I  F+++       +SA G++ +A +    Q              E
Sbjct: 12  FLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLE 71

Query: 213 IVSLSGSYVRTDLGGRTGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESMKD 272
           I+SLSG+            + V L        G      + A     + +     E   D
Sbjct: 72  ILSLSGNV-SMKDSKPFCHIHVLLGKDGEVYGGHLFSAEVFACEVFVLPLSGEAPERAFD 130

Query: 273 VSAGLK 278
              GL 
Sbjct: 131 EQTGLF 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	379
d2hx0a1	136	Hypothetical protein STM3071 {Salmonella typhimuri	99.94
d2h6la1	138	Hypothetical protein AF0104 {Archaeoglobus fulgidu	99.92

>d2hx0a1 d.290.1.3 (A:6-141) Hypothetical protein STM3071 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein STM3071
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.94  E-value=6.5e-27  Score=199.71  Aligned_cols=113  Identities=20%  Similarity=0.363  Sum_probs=103.7

Q ss_pred             CCCceeEEEEecCCCcHHHHHHHHHHHcCc-cEEEEEeeceeeeeEecCCCCCCCceeeecceeEEEeeeeeecCCCCCc
Q 016976          150 GQGFTPHVISVAAGEDVGQKIMLFMQQSKR-EICILSASGSISNASLRQPATSGGNITYEGRFEIVSLSGSYVRTDLGGR  228 (379)
Q Consensus       150 g~~ftphVIrL~~GEDIv~kI~~Faqq~~~-aicILSAiGAVSnVTLr~~~~s~~tityeG~fEILSLsGnis~~e~G~~  228 (379)
                      ++..|.|++||++||||+++|++||+++++ ++||++++|++++|+|++|+. .....++|+|||+||+|||...+    
T Consensus         3 ~~~~R~~~lrl~~Gedl~~~i~~~~~~~~I~~a~V~~~iGs~~~~~~~~~~~-~~~~~~~g~~Ei~sl~G~I~~~~----   77 (136)
T d2hx0a1           3 ASTARFYALRLLPGQEVFSQLHAFVQQNQLRAAWIAGCTGSLTDVALRYAGQ-EATTSLTGTFEVISLNGTLELTG----   77 (136)
T ss_dssp             CCCCEEEEEEECTTCBHHHHHHHHHHHHTCSSEEEEEEEEEEEEEEEECTTC-SSCEEEEEEEEEEEEEEEEETTE----
T ss_pred             CCCCcEEEEEECCCChHHHHHHHHHHHhCCCEEEEEEEeeeeEEEEEEeCCC-CCcEEecCcEEEEEEEEEeccCC----
Confidence            567899999999999999999999999995 788999999999999999975 45668999999999999999876    


Q ss_pred             cceeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccc
Q 016976          229 TGGLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVE  268 (379)
Q Consensus       229 ~~HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~  268 (379)
                       .|||++|+|.||+++||||++++++++++||||.+|...
T Consensus        78 -~HlH~~~a~~~g~v~gGhL~~g~~v~~t~Eivi~~l~~~  116 (136)
T d2hx0a1          78 -EHLHLAVSDPYGVMLGGHMMPGCTVRTTLELVIGELPAL  116 (136)
T ss_dssp             -EEEEEEEECTTSCEEEEEECTTCEEEEEEEEEEEECTTE
T ss_pred             -CeEEEEEECCCCcEEeEEecCCcEEEEEEEEEEEEccCC
Confidence             499999999999999999998888888999999999764

>d2h6la1 d.290.1.3 (A:1-138) Hypothetical protein AF0104 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: AF0104/ALDC/Ptd012-like
superfamily: AF0104/ALDC/Ptd012-like
family: AF0104-like
domain: Hypothetical protein AF0104
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.92  E-value=1.1e-25  Score=190.93  Aligned_cols=113  Identities=22%  Similarity=0.245  Sum_probs=101.6

Q ss_pred             eeEEEEecCCCcHHHHHHHHHHHcCccEEEEEeeceeeeeEecCCCCC---CCceeeecceeEEEeeeeeecCCCCCccc
Q 016976          154 TPHVISVAAGEDVGQKIMLFMQQSKREICILSASGSISNASLRQPATS---GGNITYEGRFEIVSLSGSYVRTDLGGRTG  230 (379)
Q Consensus       154 tphVIrL~~GEDIv~kI~~Faqq~~~aicILSAiGAVSnVTLr~~~~s---~~tityeG~fEILSLsGnis~~e~G~~~~  230 (379)
                      |.|++||++||||+++|++||+++++.+|+|+++|++++|+|++++..   |..+.++|++||+||+|||...+ ++++.
T Consensus        10 r~~~~rl~~Gedl~~~l~~~~~~~~i~~a~is~iG~~~~~~l~~~~~~~~~~~~~~~~g~~Ei~sl~G~i~~~~-g~p~~   88 (138)
T d2h6la1          10 KGFLLRLDYGKDLVRQIEEFLEEKGIHAAHISAIGAVRSAVIGYYDQEKKEYVKKELMEPLEILSLSGNVSMKD-SKPFC   88 (138)
T ss_dssp             EEEEEECCTTSBHHHHHHHHHHHHTCCSEEEEEEEEEEEEEEEEEETTTTEEEEEEECSCEEEEEEEEEEEEET-TEEEE
T ss_pred             CEEEEEECCCChHHHHHHHHHHHcCCcEEEEEEEeecccceEEEecCCCCccceEecCCCEEEEEeEEEEEcCC-CCcEE
Confidence            789999999999999999999999999999999999999999998665   55789999999999999999876 68999


Q ss_pred             eeEEEEeCCCCcEEceecCCceeEeccEEEEEEEcccccc
Q 016976          231 GLSVCLSSTDGQIIGGGVGGPLKAAGPVQVIVGTFQVESM  270 (379)
Q Consensus       231 HLHISLAd~DG~ViGGHL~G~lIAATtVeVVvgSF~~~~~  270 (379)
                      |+|+++++ ||+++||||..+++++  +|+++.+|.....
T Consensus        89 HlH~~~~~-~g~~~gGHl~~~~v~~--~e~~i~~~~~~~~  125 (138)
T d2h6la1          89 HIHVLLGK-DGEVYGGHLFSAEVFA--CEVFVLPLSGEAP  125 (138)
T ss_dssp             EEEEEEEE-BTEEEEEEEEEEEEEE--EEEEEEECBSCCC
T ss_pred             EEEEEECC-CCCEEEEEeCccEEEE--EEEEEEEecCCce
Confidence            99999997 7999999999887764  6888888766543